Query 012535
Match_columns 461
No_of_seqs 533 out of 1417
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 11:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 2.6E-45 9E-50 347.0 36.0 382 11-445 6-387 (447)
2 3ow8_A WD repeat-containing pr 100.0 9.3E-45 3.2E-49 326.5 33.9 287 31-428 28-320 (321)
3 1vyh_C Platelet-activating fac 100.0 1.1E-44 3.8E-49 337.6 33.9 286 31-428 104-410 (410)
4 4g56_B MGC81050 protein; prote 100.0 3.1E-44 1.1E-48 328.1 31.9 311 12-433 26-347 (357)
5 1got_B GT-beta; complex (GTP-b 100.0 3.5E-43 1.2E-47 319.4 36.6 286 31-426 51-340 (340)
6 4gqb_B Methylosome protein 50; 100.0 4.8E-43 1.7E-47 317.6 33.2 313 14-431 16-333 (344)
7 3frx_A Guanine nucleotide-bind 100.0 1.3E-42 4.4E-47 312.7 32.7 298 31-430 13-318 (319)
8 2ynn_A Coatomer subunit beta'; 100.0 5.5E-42 1.9E-46 306.5 35.2 287 32-430 10-303 (304)
9 1nr0_A Actin interacting prote 100.0 2.7E-42 9.2E-47 338.1 35.3 368 15-449 42-589 (611)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-42 6.5E-47 315.2 31.5 314 33-433 13-339 (345)
11 3iz6_a 40S ribosomal protein R 100.0 2.1E-42 7.1E-47 319.2 31.2 309 31-431 62-377 (380)
12 2pbi_B Guanine nucleotide-bind 100.0 1.2E-41 4.1E-46 310.7 35.1 286 30-426 59-354 (354)
13 2xzm_R RACK1; ribosome, transl 100.0 2.7E-41 9.3E-46 307.5 34.4 304 31-430 17-341 (343)
14 4aow_A Guanine nucleotide-bind 100.0 1.6E-40 5.5E-45 302.4 36.0 302 31-431 34-339 (340)
15 1erj_A Transcriptional repress 100.0 1.1E-40 3.7E-45 309.2 34.6 315 32-430 61-390 (393)
16 4ery_A WD repeat-containing pr 100.0 1E-39 3.6E-44 293.3 36.9 289 31-428 19-311 (312)
17 1nr0_A Actin interacting prote 100.0 5.2E-40 1.8E-44 321.9 32.9 319 33-443 16-369 (611)
18 2hes_X YDR267CP; beta-propelle 100.0 1.3E-39 4.6E-44 294.5 32.8 298 31-429 10-328 (330)
19 4e54_B DNA damage-binding prot 100.0 4.9E-40 1.7E-44 309.1 30.5 306 32-432 116-433 (435)
20 3dm0_A Maltose-binding peripla 100.0 2.3E-39 7.9E-44 322.5 34.7 307 31-428 378-692 (694)
21 2ymu_A WD-40 repeat protein; u 100.0 1.3E-38 4.6E-43 310.9 34.3 277 31-426 299-577 (577)
22 3zwl_B Eukaryotic translation 100.0 6.4E-38 2.2E-42 288.4 36.4 293 31-431 28-348 (369)
23 1k8k_C P40, ARP2/3 complex 41 100.0 4.5E-39 1.5E-43 296.6 28.7 313 33-433 6-365 (372)
24 2ynn_A Coatomer subunit beta'; 100.0 2.2E-38 7.4E-43 283.2 31.7 267 91-445 4-274 (304)
25 2pm7_B Protein transport prote 100.0 1.7E-38 5.7E-43 282.9 30.4 258 31-429 5-285 (297)
26 3ei3_B DNA damage-binding prot 100.0 2.7E-38 9.4E-43 292.6 31.9 302 31-429 69-382 (383)
27 2ymu_A WD-40 repeat protein; u 100.0 5.4E-38 1.9E-42 306.7 35.6 299 31-450 258-558 (577)
28 1sq9_A Antiviral protein SKI8; 100.0 6.5E-38 2.2E-42 291.5 33.0 331 31-431 12-397 (397)
29 4h5i_A Guanine nucleotide-exch 100.0 8.6E-38 2.9E-42 286.2 32.5 305 35-430 14-344 (365)
30 3ow8_A WD repeat-containing pr 100.0 8.7E-38 3E-42 281.0 30.6 270 93-449 25-298 (321)
31 1gxr_A ESG1, transducin-like e 100.0 9.1E-37 3.1E-41 277.1 36.7 286 31-428 47-336 (337)
32 1vyh_C Platelet-activating fac 100.0 1.1E-37 3.6E-42 290.5 30.5 269 92-451 100-390 (410)
33 3bg1_A Protein SEC13 homolog; 100.0 5E-38 1.7E-42 282.3 26.5 259 31-430 9-294 (316)
34 3dwl_C Actin-related protein 2 100.0 2.9E-38 9.8E-43 291.8 23.6 257 34-370 10-280 (377)
35 4gga_A P55CDC, cell division c 100.0 9.7E-37 3.3E-41 285.4 33.7 286 37-432 107-398 (420)
36 2pm9_A Protein WEB1, protein t 100.0 1.6E-37 5.4E-42 290.8 26.9 327 14-430 47-415 (416)
37 4gqb_B Methylosome protein 50; 100.0 6.4E-37 2.2E-41 277.4 29.3 249 31-371 78-331 (344)
38 1r5m_A SIR4-interacting protei 100.0 1.3E-36 4.4E-41 285.2 32.2 294 34-428 107-424 (425)
39 2pm9_A Protein WEB1, protein t 100.0 3.3E-37 1.1E-41 288.6 28.0 306 32-433 9-341 (416)
40 1got_B GT-beta; complex (GTP-b 100.0 2.9E-36 9.8E-41 273.9 31.6 275 90-450 45-321 (340)
41 4ggc_A P55CDC, cell division c 100.0 7.3E-36 2.5E-40 268.9 33.0 284 37-430 27-316 (318)
42 3gre_A Serine/threonine-protei 100.0 1E-36 3.5E-41 287.1 28.3 319 32-426 60-437 (437)
43 3i2n_A WD repeat-containing pr 100.0 1.1E-36 3.8E-41 278.9 27.6 302 32-431 15-355 (357)
44 3k26_A Polycomb protein EED; W 100.0 9.8E-37 3.4E-41 280.2 27.3 308 33-428 16-365 (366)
45 2pbi_B Guanine nucleotide-bind 100.0 5.7E-36 1.9E-40 273.2 31.9 278 91-451 55-336 (354)
46 1r5m_A SIR4-interacting protei 100.0 2.9E-36 9.9E-41 282.9 29.7 296 30-431 40-363 (425)
47 4aez_A CDC20, WD repeat-contai 100.0 5.1E-36 1.7E-40 278.8 30.6 285 38-438 96-389 (401)
48 4a11_B DNA excision repair pro 100.0 3.7E-35 1.3E-39 273.9 36.0 320 31-433 39-369 (408)
49 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-35 4.8E-40 266.4 31.2 281 31-433 14-300 (313)
50 4ery_A WD repeat-containing pr 100.0 4.3E-35 1.5E-39 263.2 32.8 277 86-450 9-288 (312)
51 3iz6_a 40S ribosomal protein R 100.0 1.9E-35 6.7E-40 272.6 29.6 291 89-450 55-353 (380)
52 3vl1_A 26S proteasome regulato 100.0 2.9E-35 1E-39 275.8 30.6 290 36-430 57-366 (420)
53 4g56_B MGC81050 protein; prote 100.0 4.5E-36 1.6E-40 274.0 24.1 301 40-450 10-320 (357)
54 3jrp_A Fusion protein of prote 100.0 1.9E-35 6.6E-40 272.9 27.6 259 31-431 7-289 (379)
55 3v7d_B Cell division control p 100.0 1.3E-34 4.5E-39 274.9 33.4 301 31-447 117-439 (464)
56 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.9E-35 3.4E-39 264.2 31.1 263 91-431 6-285 (345)
57 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-34 6.2E-39 306.0 36.5 311 31-445 611-1048(1249)
58 3vl1_A 26S proteasome regulato 100.0 5E-34 1.7E-38 267.4 34.7 286 36-429 98-419 (420)
59 1gxr_A ESG1, transducin-like e 100.0 4.4E-35 1.5E-39 266.0 26.2 291 33-433 7-300 (337)
60 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-34 1E-38 261.7 31.7 273 32-433 8-341 (351)
61 2oaj_A Protein SNI1; WD40 repe 100.0 8.6E-35 2.9E-39 295.1 30.1 212 31-316 13-244 (902)
62 2oaj_A Protein SNI1; WD40 repe 100.0 2E-34 6.8E-39 292.4 30.8 380 31-440 94-674 (902)
63 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-34 1.4E-38 290.6 32.8 289 32-431 10-304 (814)
64 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-34 1.5E-38 303.0 34.2 320 31-449 653-1135(1249)
65 2hes_X YDR267CP; beta-propelle 100.0 2.9E-34 9.9E-39 259.5 27.9 265 91-431 5-282 (330)
66 1pgu_A Actin interacting prote 100.0 6.4E-34 2.2E-38 280.0 32.2 313 32-448 15-346 (615)
67 2j04_B YDR362CP, TAU91; beta p 100.0 9.1E-35 3.1E-39 276.2 25.0 298 33-430 205-518 (524)
68 1yfq_A Cell cycle arrest prote 100.0 3.6E-34 1.2E-38 260.7 28.0 300 33-426 9-321 (342)
69 1pgu_A Actin interacting prote 100.0 7.3E-34 2.5E-38 279.6 31.5 305 31-429 156-614 (615)
70 1erj_A Transcriptional repress 100.0 4.3E-34 1.5E-38 264.9 27.7 253 36-371 124-389 (393)
71 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-33 4.2E-38 265.7 31.1 277 33-433 131-418 (435)
72 3mmy_A MRNA export factor; mRN 100.0 5.2E-34 1.8E-38 262.2 26.7 302 31-430 35-347 (368)
73 3frx_A Guanine nucleotide-bind 100.0 1.3E-33 4.4E-38 254.0 28.4 254 90-432 7-270 (319)
74 3v7d_B Cell division control p 100.0 6.3E-33 2.1E-37 263.4 32.5 287 31-427 158-461 (464)
75 2xzm_R RACK1; ribosome, transl 100.0 2.9E-33 1E-37 254.5 28.8 267 31-371 72-340 (343)
76 2j04_B YDR362CP, TAU91; beta p 100.0 2.9E-34 9.9E-39 272.8 22.0 265 31-430 129-429 (524)
77 3jro_A Fusion protein of prote 100.0 1.4E-33 4.9E-38 282.3 26.6 259 31-431 5-287 (753)
78 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.4E-32 1.2E-36 256.8 34.0 277 31-434 114-396 (445)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-31 4.1E-36 253.1 35.1 278 31-430 155-443 (445)
80 4e54_B DNA damage-binding prot 100.0 2.8E-32 9.7E-37 256.3 28.6 269 113-447 120-405 (435)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-32 1E-36 253.6 28.5 294 38-437 37-350 (402)
82 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-31 5.3E-36 271.7 33.7 314 15-429 38-386 (814)
83 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-32 5.6E-37 254.2 22.7 270 33-428 13-296 (588)
84 2xyi_A Probable histone-bindin 100.0 1.3E-31 4.4E-36 251.3 28.4 269 30-430 123-411 (430)
85 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.1E-31 1.4E-35 249.5 30.8 257 113-430 103-392 (450)
86 3gre_A Serine/threonine-protei 100.0 3.6E-32 1.2E-36 256.1 23.2 302 42-440 34-369 (437)
87 3vu4_A KMHSV2; beta-propeller 100.0 4.9E-31 1.7E-35 240.6 28.8 301 32-432 16-339 (355)
88 3k26_A Polycomb protein EED; W 100.0 1.1E-31 3.6E-36 246.6 23.3 264 33-370 67-365 (366)
89 3dm0_A Maltose-binding peripla 100.0 4.1E-31 1.4E-35 263.2 28.9 246 113-433 383-636 (694)
90 1sq9_A Antiviral protein SKI8; 100.0 6.6E-31 2.2E-35 244.3 27.5 268 92-438 8-330 (397)
91 3i2n_A WD repeat-containing pr 100.0 1.5E-31 5.2E-36 244.7 22.7 282 14-371 46-353 (357)
92 4aez_A CDC20, WD repeat-contai 100.0 1.5E-30 5.2E-35 241.9 29.6 250 31-379 130-387 (401)
93 3ei3_B DNA damage-binding prot 100.0 1.1E-30 3.8E-35 241.5 28.4 275 90-439 63-348 (383)
94 4gga_A P55CDC, cell division c 100.0 1.8E-30 6.3E-35 242.8 30.2 256 32-384 144-407 (420)
95 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-30 5E-35 239.7 28.8 262 113-429 9-274 (372)
96 4aow_A Guanine nucleotide-bind 100.0 3.4E-30 1.1E-34 234.2 30.4 255 91-432 29-289 (340)
97 3dwl_C Actin-related protein 2 100.0 8E-32 2.7E-36 248.6 19.4 257 113-429 12-281 (377)
98 3zwl_B Eukaryotic translation 100.0 8E-30 2.7E-34 234.3 31.8 274 92-450 24-324 (369)
99 3odt_A Protein DOA1; ubiquitin 100.0 8.8E-30 3E-34 228.6 30.3 264 89-448 7-273 (313)
100 4h5i_A Guanine nucleotide-exch 100.0 3.8E-31 1.3E-35 242.1 21.1 251 33-371 71-343 (365)
101 1yfq_A Cell cycle arrest prote 100.0 6.9E-30 2.4E-34 232.3 27.8 261 113-446 12-299 (342)
102 2pm7_B Protein transport prote 100.0 1.2E-29 4.1E-34 225.7 27.9 205 113-431 10-240 (297)
103 3lrv_A PRE-mRNA-splicing facto 100.0 3.5E-30 1.2E-34 234.2 23.7 273 41-430 42-334 (343)
104 3bws_A Protein LP49; two-domai 100.0 2.7E-29 9.1E-34 236.2 29.6 286 33-428 120-431 (433)
105 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-29 5E-34 230.1 26.6 240 124-432 46-295 (343)
106 1l0q_A Surface layer protein; 100.0 7.6E-29 2.6E-33 229.9 31.8 277 48-443 3-288 (391)
107 4gq1_A NUP37; propeller, trans 100.0 3.8E-30 1.3E-34 238.2 22.8 265 34-428 88-388 (393)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-29 3.6E-34 236.4 25.1 258 31-371 77-342 (402)
109 3dw8_B Serine/threonine-protei 100.0 7.7E-29 2.6E-33 234.0 30.5 295 36-428 94-445 (447)
110 2w18_A PALB2, fancn, partner a 100.0 1.2E-28 4.2E-33 214.5 28.7 182 202-427 154-355 (356)
111 4a11_B DNA excision repair pro 100.0 5.6E-29 1.9E-33 232.0 28.6 294 33-428 97-404 (408)
112 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-30 3.7E-35 242.1 15.8 261 31-418 81-350 (588)
113 3bg1_A Protein SEC13 homolog; 100.0 8.3E-30 2.8E-34 228.8 20.9 222 113-446 14-267 (316)
114 4ggc_A P55CDC, cell division c 100.0 3.3E-28 1.1E-32 218.8 30.4 244 32-371 64-315 (318)
115 1l0q_A Surface layer protein; 100.0 2E-26 7E-31 213.5 34.3 298 32-431 28-344 (391)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.1E-27 1.4E-31 222.2 29.8 266 113-427 5-337 (450)
117 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-27 1.3E-31 214.9 27.5 247 113-431 20-273 (355)
118 3mmy_A MRNA export factor; mRN 100.0 6.2E-27 2.1E-31 214.9 28.7 281 91-450 30-324 (368)
119 1p22_A F-BOX/WD-repeat protein 100.0 8.1E-27 2.8E-31 219.2 29.2 248 113-447 134-391 (435)
120 3jrp_A Fusion protein of prote 100.0 5.2E-27 1.8E-31 216.4 26.0 214 92-431 3-242 (379)
121 4gq1_A NUP37; propeller, trans 100.0 2E-27 7E-32 219.8 23.0 212 230-451 133-369 (393)
122 2w18_A PALB2, fancn, partner a 100.0 9E-28 3.1E-32 209.1 18.5 238 34-369 110-355 (356)
123 2xyi_A Probable histone-bindin 100.0 4.9E-26 1.7E-30 213.4 28.1 212 176-430 133-354 (430)
124 3f3f_A Nucleoporin SEH1; struc 99.9 5.9E-26 2E-30 206.6 26.2 229 94-430 5-250 (351)
125 1nir_A Nitrite reductase; hemo 99.9 1.7E-24 6E-29 207.4 32.0 314 38-438 181-522 (543)
126 3jro_A Fusion protein of prote 99.9 1.7E-25 5.8E-30 224.0 24.9 213 94-431 3-240 (753)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-25 6.5E-30 207.8 21.8 301 34-451 61-407 (415)
128 1nir_A Nitrite reductase; hemo 99.9 1.3E-24 4.5E-29 208.2 25.4 283 42-433 144-462 (543)
129 3bws_A Protein LP49; two-domai 99.9 5.9E-24 2E-28 199.7 27.9 238 32-370 166-431 (433)
130 3u4y_A Uncharacterized protein 99.9 7.8E-22 2.7E-26 178.3 32.7 288 41-431 3-306 (331)
131 2ecf_A Dipeptidyl peptidase IV 99.9 2.6E-23 8.9E-28 208.9 25.3 308 35-429 36-413 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.9E-22 1.3E-26 185.4 29.3 261 32-411 114-410 (415)
133 1ri6_A Putative isomerase YBHE 99.9 1.4E-21 4.7E-26 177.4 31.1 254 113-428 38-307 (343)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-22 4.3E-27 203.4 23.3 294 36-430 17-394 (723)
135 2ojh_A Uncharacterized protein 99.9 3.9E-22 1.3E-26 177.0 23.4 256 52-420 17-293 (297)
136 1pby_B Quinohemoprotein amine 99.9 2.2E-21 7.5E-26 175.6 27.3 274 48-433 2-314 (337)
137 1ri6_A Putative isomerase YBHE 99.9 5.1E-21 1.8E-25 173.7 29.4 260 31-371 33-308 (343)
138 1k32_A Tricorn protease; prote 99.9 1.1E-21 3.9E-26 203.6 27.9 156 232-431 294-463 (1045)
139 3vgz_A Uncharacterized protein 99.9 1.1E-20 3.7E-25 172.3 30.9 284 33-420 38-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 6.6E-22 2.2E-26 197.5 23.7 307 36-431 82-437 (706)
141 3hfq_A Uncharacterized protein 99.9 5.2E-21 1.8E-25 174.0 27.1 272 32-433 36-323 (347)
142 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-21 5E-26 196.2 24.3 293 37-430 110-460 (741)
143 3o4h_A Acylamino-acid-releasin 99.9 1.3E-21 4.4E-26 190.8 21.0 270 34-429 20-315 (582)
144 3u4y_A Uncharacterized protein 99.9 4.3E-20 1.5E-24 166.8 26.3 256 34-371 39-304 (331)
145 1k32_A Tricorn protease; prote 99.9 6.7E-21 2.3E-25 197.9 23.7 285 32-429 200-502 (1045)
146 2oit_A Nucleoporin 214KDA; NH2 99.9 2.6E-19 8.9E-24 166.9 31.6 332 34-429 35-405 (434)
147 1jmx_B Amine dehydrogenase; ox 99.9 4.4E-20 1.5E-24 168.0 25.7 295 40-433 4-329 (349)
148 3vgz_A Uncharacterized protein 99.9 2.3E-19 8E-24 163.4 28.9 246 113-433 41-307 (353)
149 2ojh_A Uncharacterized protein 99.9 1.5E-20 5E-25 166.7 20.1 236 31-360 37-290 (297)
150 2z3z_A Dipeptidyl aminopeptida 99.9 4.5E-20 1.5E-24 184.3 25.9 297 38-431 28-393 (706)
151 3scy_A Hypothetical bacterial 99.9 1.9E-18 6.4E-23 158.0 31.5 261 113-431 50-341 (361)
152 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-19 4.3E-24 181.6 25.4 320 37-431 62-445 (723)
153 3scy_A Hypothetical bacterial 99.8 2.1E-18 7.2E-23 157.7 30.3 268 34-371 48-337 (361)
154 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.6E-18 1.2E-22 156.2 31.8 259 114-430 41-342 (365)
155 1z68_A Fibroblast activation p 99.8 5.1E-20 1.7E-24 184.2 19.2 292 40-429 20-391 (719)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 2.4E-19 8.3E-24 167.1 21.5 215 113-371 37-278 (434)
157 1pby_B Quinohemoprotein amine 99.8 2.4E-18 8.2E-23 155.6 23.0 248 37-384 35-322 (337)
158 3pe7_A Oligogalacturonate lyas 99.8 1.4E-18 4.8E-23 160.5 21.6 302 41-428 41-381 (388)
159 3o4h_A Acylamino-acid-releasin 99.8 3.9E-19 1.3E-23 173.3 18.1 239 113-427 22-274 (582)
160 4a5s_A Dipeptidyl peptidase 4 99.8 4.5E-18 1.6E-22 170.2 22.8 259 36-433 17-357 (740)
161 1q7f_A NHL, brain tumor CG1071 99.8 4.9E-16 1.7E-20 137.0 31.9 264 12-430 8-281 (286)
162 1z68_A Fibroblast activation p 99.8 3.5E-18 1.2E-22 171.0 18.1 259 116-431 19-348 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.9E-17 1E-21 150.2 21.1 258 35-371 39-341 (365)
164 3c5m_A Oligogalacturonate lyas 99.8 7.2E-17 2.5E-21 149.4 23.7 302 35-431 35-386 (396)
165 3hfq_A Uncharacterized protein 99.8 5.3E-16 1.8E-20 140.9 27.4 174 233-429 85-271 (347)
166 3azo_A Aminopeptidase; POP fam 99.7 3.8E-16 1.3E-20 154.7 24.1 310 31-433 19-373 (662)
167 2oiz_A Aromatic amine dehydrog 99.7 7.1E-15 2.4E-19 133.7 27.0 292 46-433 14-340 (361)
168 3fvz_A Peptidyl-glycine alpha- 99.7 6.6E-15 2.3E-19 132.4 26.0 256 35-370 23-321 (329)
169 2oiz_A Aromatic amine dehydrog 99.7 2.7E-15 9.2E-20 136.5 22.0 274 40-411 54-360 (361)
170 1jmx_B Amine dehydrogenase; ox 99.7 2.4E-15 8.1E-20 136.5 20.9 249 118-433 5-288 (349)
171 3e5z_A Putative gluconolactona 99.7 3.8E-14 1.3E-18 125.5 26.4 240 34-430 26-287 (296)
172 3pe7_A Oligogalacturonate lyas 99.7 6.2E-15 2.1E-19 136.0 21.2 243 118-433 41-333 (388)
173 3fvz_A Peptidyl-glycine alpha- 99.7 2.5E-14 8.6E-19 128.6 22.6 257 113-429 24-322 (329)
174 2dg1_A DRP35, lactonase; beta 99.6 3E-14 1E-18 128.5 21.6 281 36-419 6-300 (333)
175 4a5s_A Dipeptidyl peptidase 4 99.6 1.9E-14 6.6E-19 144.0 22.2 253 38-371 64-353 (740)
176 3azo_A Aminopeptidase; POP fam 99.6 4.1E-14 1.4E-18 140.1 23.4 166 113-316 130-327 (662)
177 1qks_A Cytochrome CD1 nitrite 99.6 1.3E-12 4.5E-17 124.9 32.6 316 34-433 195-542 (567)
178 2bkl_A Prolyl endopeptidase; m 99.6 3.5E-14 1.2E-18 141.1 22.5 250 34-432 119-400 (695)
179 2gop_A Trilobed protease; beta 99.6 1.2E-13 4E-18 125.3 23.7 273 31-428 10-330 (347)
180 2xdw_A Prolyl endopeptidase; a 99.6 5.1E-13 1.7E-17 133.1 30.1 248 113-431 125-416 (710)
181 1rwi_B Serine/threonine-protei 99.6 5.7E-13 1.9E-17 116.1 26.2 239 37-431 25-266 (270)
182 2z2n_A Virginiamycin B lyase; 99.6 6.1E-12 2.1E-16 111.2 32.4 283 34-431 13-297 (299)
183 3dsm_A Uncharacterized protein 99.6 9.5E-13 3.2E-17 118.1 24.9 237 115-433 46-305 (328)
184 2dg1_A DRP35, lactonase; beta 99.6 2E-12 6.8E-17 116.5 26.9 243 33-359 42-297 (333)
185 1qks_A Cytochrome CD1 nitrite 99.6 2.6E-12 9E-17 122.8 28.6 281 45-430 165-478 (567)
186 3c5m_A Oligogalacturonate lyas 99.6 2.1E-13 7.1E-18 126.0 18.8 238 115-433 38-333 (396)
187 2xdw_A Prolyl endopeptidase; a 99.5 8.7E-13 3E-17 131.4 23.8 259 34-381 123-424 (710)
188 1q7f_A NHL, brain tumor CG1071 99.5 1.3E-11 4.3E-16 108.6 26.0 201 34-371 75-280 (286)
189 3no2_A Uncharacterized protein 99.5 2E-11 7E-16 106.1 26.0 238 125-430 4-252 (276)
190 2mad_H Methylamine dehydrogena 99.5 2.1E-10 7.2E-15 104.2 33.2 297 42-435 27-356 (373)
191 2qc5_A Streptogramin B lactona 99.5 2.2E-10 7.5E-15 101.2 32.6 279 35-428 19-299 (300)
192 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-11 3.8E-16 124.0 26.4 241 114-431 164-443 (741)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.7E-11 9.4E-16 107.9 25.6 157 235-430 118-300 (314)
194 3dsm_A Uncharacterized protein 99.5 6.5E-11 2.2E-15 106.1 27.7 252 36-385 44-314 (328)
195 2gop_A Trilobed protease; beta 99.5 1.7E-11 5.7E-16 111.0 23.4 232 36-384 59-341 (347)
196 3no2_A Uncharacterized protein 99.4 3.1E-11 1.1E-15 105.0 23.1 249 46-384 4-264 (276)
197 3sjl_D Methylamine dehydrogena 99.4 3.4E-11 1.1E-15 108.0 23.6 264 40-385 82-376 (386)
198 3c75_H MADH, methylamine dehyd 99.4 6.6E-11 2.3E-15 108.1 24.0 294 45-435 82-408 (426)
199 3sjl_D Methylamine dehydrogena 99.4 5.4E-10 1.8E-14 100.2 29.3 297 41-433 38-367 (386)
200 2z2n_A Virginiamycin B lyase; 99.4 7.3E-10 2.5E-14 97.8 29.9 238 113-428 15-254 (299)
201 3g4e_A Regucalcin; six bladed 99.4 4.3E-10 1.5E-14 99.2 27.1 230 37-417 14-260 (297)
202 3hrp_A Uncharacterized protein 99.4 1.4E-09 4.8E-14 100.3 30.1 268 113-427 131-408 (409)
203 2mad_H Methylamine dehydrogena 99.4 6.8E-10 2.3E-14 100.9 27.4 257 40-379 70-357 (373)
204 3dr2_A Exported gluconolactona 99.4 2.2E-10 7.7E-15 101.5 23.6 234 33-422 42-300 (305)
205 1yr2_A Prolyl oligopeptidase; 99.3 3.6E-11 1.2E-15 120.3 19.5 244 35-371 162-441 (741)
206 3e5z_A Putative gluconolactona 99.3 1.6E-10 5.5E-15 102.0 20.7 195 176-432 32-248 (296)
207 1xip_A Nucleoporin NUP159; bet 99.3 9E-11 3.1E-15 105.7 18.8 216 8-358 10-230 (388)
208 2bkl_A Prolyl endopeptidase; m 99.3 2.2E-10 7.5E-15 113.8 23.4 192 176-428 125-348 (695)
209 3hrp_A Uncharacterized protein 99.3 9.5E-10 3.2E-14 101.4 25.4 260 36-369 131-408 (409)
210 3c75_H MADH, methylamine dehyd 99.3 7E-10 2.4E-14 101.4 21.8 257 40-379 122-409 (426)
211 2qc5_A Streptogramin B lactona 99.3 1.3E-08 4.4E-13 89.8 29.6 238 113-428 20-259 (300)
212 1rwi_B Serine/threonine-protei 99.3 9E-10 3.1E-14 95.7 21.0 195 176-431 28-224 (270)
213 2ghs_A AGR_C_1268P; regucalcin 99.2 7E-09 2.4E-13 92.7 26.5 144 235-417 135-290 (326)
214 3iuj_A Prolyl endopeptidase; h 99.2 1.8E-09 6.2E-14 107.0 24.3 245 113-432 129-408 (693)
215 1xip_A Nucleoporin NUP159; bet 99.2 5.2E-10 1.8E-14 100.8 16.1 141 232-415 87-230 (388)
216 1mda_H Methylamine dehydrogena 99.2 5E-09 1.7E-13 94.2 22.0 258 117-442 69-358 (368)
217 2qe8_A Uncharacterized protein 99.1 6.6E-09 2.3E-13 93.6 21.4 282 36-425 17-317 (343)
218 2ece_A 462AA long hypothetical 99.1 4.2E-08 1.4E-12 88.7 26.0 154 253-417 227-399 (462)
219 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3.1E-08 1.1E-12 87.9 22.4 208 34-315 69-300 (314)
220 2qe8_A Uncharacterized protein 99.1 1.6E-08 5.4E-13 91.1 19.9 239 33-367 64-317 (343)
221 1mda_H Methylamine dehydrogena 99.1 7.8E-09 2.7E-13 92.9 17.4 256 40-385 69-359 (368)
222 3iuj_A Prolyl endopeptidase; h 99.0 1.2E-08 4.3E-13 101.0 20.0 241 34-371 127-405 (693)
223 3g4e_A Regucalcin; six bladed 99.0 4.7E-08 1.6E-12 86.1 20.1 198 33-303 51-261 (297)
224 1kb0_A Quinohemoprotein alcoho 99.0 1.3E-07 4.3E-12 93.0 24.5 175 237-433 246-511 (677)
225 1yiq_A Quinohemoprotein alcoho 99.0 6.9E-07 2.4E-11 88.0 29.1 176 238-433 239-509 (689)
226 1fwx_A Nitrous oxide reductase 98.9 1.9E-08 6.6E-13 94.1 15.7 282 45-432 99-434 (595)
227 3hxj_A Pyrrolo-quinoline quino 98.9 5.9E-07 2E-11 80.3 23.0 219 126-430 107-325 (330)
228 1kb0_A Quinohemoprotein alcoho 98.9 4E-07 1.4E-11 89.5 23.4 93 305-429 457-567 (677)
229 2hz6_A Endoplasmic reticulum t 98.9 2.3E-09 7.9E-14 97.5 6.9 144 243-433 47-196 (369)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.6E-06 8.9E-11 77.7 27.0 228 126-433 103-341 (376)
231 3q7m_A Lipoprotein YFGL, BAMB; 98.8 1.8E-06 6.1E-11 78.8 24.6 264 46-426 102-375 (376)
232 1npe_A Nidogen, entactin; glyc 98.8 9.2E-06 3.1E-10 70.1 27.0 196 176-433 40-242 (267)
233 2ghs_A AGR_C_1268P; regucalcin 98.8 1.1E-06 3.7E-11 78.4 21.7 196 34-303 88-291 (326)
234 1npe_A Nidogen, entactin; glyc 98.8 6.5E-06 2.2E-10 71.0 25.8 221 114-411 37-263 (267)
235 1yiq_A Quinohemoprotein alcoho 98.7 2.7E-06 9.4E-11 83.8 24.1 79 304-414 454-533 (689)
236 2ece_A 462AA long hypothetical 98.7 1.2E-05 4.1E-10 72.8 24.7 217 177-430 87-353 (462)
237 3hxj_A Pyrrolo-quinoline quino 98.7 4.1E-07 1.4E-11 81.3 15.1 177 198-432 110-286 (330)
238 2iwa_A Glutamine cyclotransfer 98.7 7.4E-06 2.5E-10 69.5 21.6 210 32-315 15-238 (266)
239 3dr2_A Exported gluconolactona 98.7 1.3E-06 4.5E-11 77.1 17.6 155 234-430 45-225 (305)
240 2hz6_A Endoplasmic reticulum t 98.7 3.9E-08 1.3E-12 89.4 7.6 187 46-319 8-197 (369)
241 1kv9_A Type II quinohemoprotei 98.7 2.5E-05 8.5E-10 76.7 27.8 172 238-433 234-492 (668)
242 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.6E-10 68.5 20.5 209 115-371 23-237 (266)
243 2fp8_A Strictosidine synthase; 98.6 1.2E-05 4E-10 71.5 21.9 258 115-430 21-314 (322)
244 3nol_A Glutamine cyclotransfer 98.6 1.6E-05 5.6E-10 66.5 20.8 189 37-301 44-243 (262)
245 1fwx_A Nitrous oxide reductase 98.6 7.9E-06 2.7E-10 76.7 20.6 197 199-429 106-361 (595)
246 3qqz_A Putative uncharacterize 98.6 0.00023 7.8E-09 60.0 27.4 176 236-428 72-252 (255)
247 2fp8_A Strictosidine synthase; 98.5 5.3E-05 1.8E-09 67.3 23.2 271 37-371 20-313 (322)
248 3v65_B Low-density lipoprotein 98.5 0.00016 5.5E-09 65.8 26.6 233 128-437 89-326 (386)
249 1ijq_A LDL receptor, low-densi 98.5 0.00059 2E-08 60.2 29.5 235 129-434 4-243 (316)
250 4a2l_A BT_4663, two-component 98.5 0.00049 1.7E-08 69.3 32.1 310 35-431 214-528 (795)
251 3v64_C Agrin; beta propeller, 98.4 0.00056 1.9E-08 61.3 28.3 232 128-437 46-283 (349)
252 4a2l_A BT_4663, two-component 98.4 0.00062 2.1E-08 68.6 31.1 300 38-431 175-482 (795)
253 2ad6_A Methanol dehydrogenase 98.4 0.00029 1E-08 67.7 27.1 55 362-433 444-498 (571)
254 3nol_A Glutamine cyclotransfer 98.4 3.4E-05 1.1E-09 64.7 17.8 196 114-360 44-243 (262)
255 3nok_A Glutaminyl cyclase; bet 98.4 7.3E-05 2.5E-09 62.6 19.2 189 37-301 56-253 (268)
256 2p4o_A Hypothetical protein; p 98.4 0.00098 3.4E-08 58.5 27.7 103 285-419 171-278 (306)
257 3v9f_A Two-component system se 98.4 0.0011 3.6E-08 66.7 31.4 312 35-431 257-570 (781)
258 3v65_B Low-density lipoprotein 98.3 0.0021 7.3E-08 58.4 28.9 207 113-380 116-326 (386)
259 2xe4_A Oligopeptidase B; hydro 98.3 0.0011 3.8E-08 66.1 29.1 31 37-67 175-211 (751)
260 1k3i_A Galactose oxidase precu 98.3 0.00012 4E-09 72.0 21.3 77 40-151 190-280 (656)
261 1flg_A Protein (quinoprotein e 98.2 0.0018 6.2E-08 62.3 28.9 56 361-433 465-520 (582)
262 3p5b_L Low density lipoprotein 98.2 0.0016 5.5E-08 59.5 27.2 237 128-436 85-327 (400)
263 3mbr_X Glutamine cyclotransfer 98.2 0.00065 2.2E-08 56.4 22.1 192 36-301 21-222 (243)
264 3nok_A Glutaminyl cyclase; bet 98.2 9.8E-05 3.4E-09 61.9 17.0 159 233-433 54-214 (268)
265 3v9f_A Two-component system se 98.2 0.003 1E-07 63.4 30.6 300 35-430 312-612 (781)
266 3v64_C Agrin; beta propeller, 98.2 0.0032 1.1E-07 56.3 29.2 207 113-380 73-283 (349)
267 1w6s_A Methanol dehydrogenase 98.2 0.002 6.8E-08 62.0 27.0 80 239-319 246-347 (599)
268 4hw6_A Hypothetical protein, I 98.2 0.0023 7.9E-08 59.1 26.6 267 114-428 140-432 (433)
269 1kv9_A Type II quinohemoprotei 98.1 0.0014 4.7E-08 64.4 26.2 63 304-384 437-500 (668)
270 3m0c_C LDL receptor, low-densi 98.1 0.0043 1.5E-07 61.7 28.9 214 176-445 428-648 (791)
271 3qqz_A Putative uncharacterize 98.1 0.0033 1.1E-07 52.9 23.7 213 36-311 27-250 (255)
272 3tc9_A Hypothetical hydrolase; 98.1 0.0028 9.5E-08 58.5 25.6 266 114-428 138-429 (430)
273 3mbr_X Glutamine cyclotransfer 98.1 0.00045 1.5E-08 57.4 18.0 159 233-434 20-184 (243)
274 3tc9_A Hypothetical hydrolase; 98.0 0.0049 1.7E-07 56.9 25.9 255 37-370 138-429 (430)
275 2ad6_A Methanol dehydrogenase 98.0 0.0017 5.8E-08 62.4 23.2 62 304-383 443-505 (571)
276 2xe4_A Oligopeptidase B; hydro 98.0 0.00041 1.4E-08 69.2 19.6 113 235-371 175-304 (751)
277 1n7d_A LDL receptor, low-densi 98.0 0.00019 6.5E-09 70.7 16.4 204 176-433 410-618 (699)
278 3sov_A LRP-6, low-density lipo 98.0 0.0085 2.9E-07 52.7 27.2 200 176-436 39-245 (318)
279 4hw6_A Hypothetical protein, I 97.9 0.012 4.1E-07 54.3 28.0 256 36-370 139-432 (433)
280 2p4o_A Hypothetical protein; p 97.9 0.003 1E-07 55.4 22.1 199 176-428 36-241 (306)
281 1w6s_A Methanol dehydrogenase 97.8 0.009 3.1E-07 57.5 24.8 32 352-384 483-515 (599)
282 1ijq_A LDL receptor, low-densi 97.8 0.013 4.6E-07 51.4 27.8 209 113-380 30-246 (316)
283 1k3i_A Galactose oxidase precu 97.8 0.004 1.4E-07 61.1 21.6 79 37-151 244-329 (656)
284 3kya_A Putative phosphatase; s 97.7 0.027 9.3E-07 52.3 28.1 276 114-431 140-477 (496)
285 1flg_A Protein (quinoprotein e 97.7 0.02 6.8E-07 55.1 25.2 79 304-414 465-544 (582)
286 3ei3_A DNA damage-binding prot 97.7 0.056 1.9E-06 56.3 29.0 33 35-67 553-592 (1158)
287 3kya_A Putative phosphatase; s 97.6 0.039 1.3E-06 51.3 27.8 177 176-371 251-475 (496)
288 3sre_A PON1, serum paraoxonase 97.6 0.008 2.7E-07 53.3 19.5 167 235-429 51-252 (355)
289 4a0p_A LRP6, LRP-6, low-densit 97.6 0.064 2.2E-06 52.0 29.5 228 128-433 8-241 (628)
290 2xbg_A YCF48-like protein; pho 97.6 0.038 1.3E-06 48.8 32.4 160 231-427 160-320 (327)
291 3p5b_L Low density lipoprotein 97.6 0.047 1.6E-06 49.7 26.6 208 113-380 112-328 (400)
292 3sov_A LRP-6, low-density lipo 97.5 0.04 1.4E-06 48.4 24.4 205 115-380 37-246 (318)
293 3m0c_C LDL receptor, low-densi 97.5 0.098 3.4E-06 52.0 28.4 207 113-379 424-639 (791)
294 2p9w_A MAL S 1 allergenic prot 97.5 0.039 1.3E-06 48.0 20.7 180 230-429 9-215 (334)
295 1n7d_A LDL receptor, low-densi 97.4 0.0025 8.5E-08 62.8 15.0 208 36-317 406-617 (699)
296 2xbg_A YCF48-like protein; pho 97.4 0.062 2.1E-06 47.4 26.0 118 232-369 203-320 (327)
297 2p9w_A MAL S 1 allergenic prot 97.3 0.069 2.4E-06 46.4 22.4 105 253-371 99-215 (334)
298 3pbp_A Nucleoporin NUP82; beta 97.3 0.051 1.7E-06 48.8 19.5 165 240-425 27-208 (452)
299 3s94_A LRP-6, low-density lipo 97.2 0.16 5.5E-06 49.1 24.2 158 234-434 84-248 (619)
300 3sre_A PON1, serum paraoxonase 97.2 0.055 1.9E-06 48.0 19.1 174 203-419 81-287 (355)
301 4a0p_A LRP6, LRP-6, low-densit 97.0 0.3 1E-05 47.3 26.4 195 114-371 38-237 (628)
302 2ism_A Putative oxidoreductase 96.9 0.21 7E-06 44.5 25.8 25 115-142 33-57 (352)
303 2xzh_A Clathrin heavy chain 1; 96.8 0.14 4.8E-06 44.2 17.1 148 253-444 48-202 (365)
304 3amr_A 3-phytase; beta-propell 96.7 0.27 9.3E-06 43.1 21.7 112 198-313 146-262 (355)
305 3a9g_A Putative uncharacterize 96.7 0.08 2.7E-06 47.2 16.4 109 234-358 29-151 (354)
306 3s94_A LRP-6, low-density lipo 96.7 0.48 1.7E-05 45.8 32.1 202 35-316 39-245 (619)
307 2g8s_A Glucose/sorbosone dehyd 96.7 0.31 1.1E-05 43.4 25.9 30 36-65 18-47 (353)
308 2ism_A Putative oxidoreductase 96.7 0.068 2.3E-06 47.7 15.6 111 234-358 31-151 (352)
309 1tl2_A L10, protein (tachylect 96.6 0.2 6.8E-06 40.6 15.6 114 234-366 41-158 (236)
310 3das_A Putative oxidoreductase 96.5 0.38 1.3E-05 42.5 25.1 33 35-67 31-63 (347)
311 3das_A Putative oxidoreductase 96.5 0.2 7E-06 44.2 17.1 114 234-358 32-156 (347)
312 3amr_A 3-phytase; beta-propell 96.4 0.43 1.5E-05 41.9 23.6 149 253-428 98-262 (355)
313 2xzh_A Clathrin heavy chain 1; 96.4 0.42 1.4E-05 41.3 23.5 231 135-433 48-294 (365)
314 3pbp_A Nucleoporin NUP82; beta 96.3 0.11 3.7E-06 46.8 14.3 125 235-366 67-207 (452)
315 1cru_A Protein (soluble quinop 96.3 0.26 8.8E-06 45.6 17.2 58 234-293 27-87 (454)
316 3a9g_A Putative uncharacterize 96.2 0.59 2E-05 41.6 26.1 64 342-417 259-330 (354)
317 1bpo_A Protein (clathrin); cla 96.2 0.51 1.7E-05 42.6 17.7 148 253-444 47-201 (494)
318 3ei3_A DNA damage-binding prot 96.2 1.5 5.2E-05 45.7 29.0 37 113-149 554-595 (1158)
319 1bpo_A Protein (clathrin); cla 96.1 0.78 2.7E-05 41.4 24.9 232 134-433 46-293 (494)
320 2g8s_A Glucose/sorbosone dehyd 96.0 0.32 1.1E-05 43.4 16.1 79 234-314 18-107 (353)
321 3ott_A Two-component system se 94.6 4.1 0.00014 40.5 28.1 173 234-431 324-504 (758)
322 1tl2_A L10, protein (tachylect 94.4 1 3.5E-05 36.5 12.4 114 284-425 42-159 (236)
323 2wg3_C Hedgehog-interacting pr 94.2 3.4 0.00012 38.1 20.3 60 234-293 14-79 (463)
324 2vpj_A Kelch-like protein 12; 93.7 3 0.0001 35.7 19.5 148 244-432 112-281 (301)
325 1xi4_A Clathrin heavy chain; a 93.6 3.1 0.00011 43.8 17.0 191 204-433 85-293 (1630)
326 3s25_A Hypothetical 7-bladed b 92.8 4.4 0.00015 34.9 19.1 136 240-430 110-256 (302)
327 1xi4_A Clathrin heavy chain; a 91.7 1.7 5.9E-05 45.6 12.2 148 253-444 47-201 (1630)
328 2xn4_A Kelch-like protein 2; s 90.4 7.8 0.00027 33.1 19.5 24 409-432 251-279 (302)
329 3s25_A Hypothetical 7-bladed b 90.3 8.1 0.00028 33.2 24.6 106 239-380 150-262 (302)
330 1cru_A Protein (soluble quinop 87.7 17 0.00058 33.4 28.5 34 114-149 28-61 (454)
331 3sbq_A Nitrous-oxide reductase 87.0 5.4 0.00018 37.4 10.6 81 234-315 323-409 (638)
332 3ii7_A Kelch-like protein 7; p 86.9 14 0.00047 31.6 22.1 24 409-432 247-275 (306)
333 3ott_A Two-component system se 86.9 26 0.00088 34.7 31.1 208 113-371 373-586 (758)
334 2vpj_A Kelch-like protein 12; 86.1 15 0.00051 31.2 19.6 64 244-316 159-233 (301)
335 1zgk_A Kelch-like ECH-associat 85.0 17 0.00059 31.0 19.9 148 244-432 121-290 (308)
336 2wg3_C Hedgehog-interacting pr 84.7 16 0.00055 33.7 13.0 31 283-313 14-44 (463)
337 2uvk_A YJHT; unknown function, 82.4 25 0.00085 30.8 21.6 35 406-440 313-353 (357)
338 3sbq_A Nitrous-oxide reductase 81.3 6.4 0.00022 36.9 8.5 76 342-429 323-408 (638)
339 3ii7_A Kelch-like protein 7; p 81.1 25 0.00085 29.9 22.9 27 126-152 56-86 (306)
340 1zgk_A Kelch-like ECH-associat 80.0 27 0.00094 29.8 20.2 64 244-316 168-242 (308)
341 3q6k_A 43.2 kDa salivary prote 78.7 36 0.0012 30.3 19.2 75 234-314 220-306 (381)
342 2be1_A Serine/threonine-protei 78.0 9.7 0.00033 33.3 8.5 108 296-433 11-134 (339)
343 2xn4_A Kelch-like protein 2; s 77.8 31 0.0011 29.2 17.1 64 244-316 204-278 (302)
344 4gq2_M Nucleoporin NUP120; bet 77.1 53 0.0018 33.6 14.8 40 113-154 236-275 (950)
345 3q6k_A 43.2 kDa salivary prote 75.8 43 0.0015 29.8 17.0 158 255-429 124-306 (381)
346 4asc_A Kelch repeat and BTB do 71.4 48 0.0016 28.3 16.1 23 409-431 196-223 (315)
347 4gq2_M Nucleoporin NUP120; bet 70.9 35 0.0012 34.9 11.7 34 400-433 237-270 (950)
348 2zwa_A Leucine carboxyl methyl 68.4 92 0.0032 30.4 17.0 155 244-433 451-639 (695)
349 3f7f_A Nucleoporin NUP120; nuc 64.9 68 0.0023 31.3 11.5 38 113-154 222-259 (729)
350 4fhn_B Nucleoporin NUP120; pro 58.4 37 0.0013 35.6 9.3 40 114-155 239-278 (1139)
351 4fhn_B Nucleoporin NUP120; pro 58.1 27 0.00094 36.5 8.3 32 402-433 241-272 (1139)
352 3f7f_A Nucleoporin NUP120; nuc 55.8 91 0.0031 30.4 10.6 27 407-433 228-254 (729)
353 2be1_A Serine/threonine-protei 55.7 1E+02 0.0036 26.8 18.3 29 127-155 11-39 (339)
354 2woz_A Kelch repeat and BTB do 51.7 1.1E+02 0.0038 25.9 18.7 23 293-316 158-186 (318)
355 3zwu_A Alkaline phosphatase PH 51.1 42 0.0014 32.0 7.5 60 284-359 477-548 (592)
356 4asc_A Kelch repeat and BTB do 50.9 1.1E+02 0.0039 25.8 20.3 64 244-316 148-223 (315)
357 4a9v_A PHOX; hydrolase, beta-p 43.5 1E+02 0.0035 29.1 8.7 60 342-416 476-548 (592)
358 3zwu_A Alkaline phosphatase PH 42.8 87 0.003 29.8 8.3 60 342-416 476-548 (592)
359 4a9v_A PHOX; hydrolase, beta-p 42.2 93 0.0032 29.4 8.2 61 283-359 476-548 (592)
360 2woz_A Kelch repeat and BTB do 33.6 2.2E+02 0.0074 24.0 18.1 23 409-431 206-233 (318)
361 3qhy_B Beta-lactamase inhibito 32.9 2.2E+02 0.0074 23.8 15.6 107 235-373 103-209 (282)
362 2zwa_A Leucine carboxyl methyl 32.1 3.6E+02 0.012 26.2 17.1 160 243-431 396-579 (695)
363 3mez_A Mannose-specific lectin 28.6 1.4E+02 0.0049 20.7 5.7 25 345-369 52-76 (111)
364 3mez_B Mannose-specific lectin 27.1 1.6E+02 0.0055 20.5 10.3 26 345-371 59-84 (113)
365 3qhy_B Beta-lactamase inhibito 23.5 3.2E+02 0.011 22.7 14.5 105 235-371 25-129 (282)
366 4hvt_A Ritya.17583.B, post-pro 20.1 6.2E+02 0.021 24.7 12.9 30 237-266 132-168 (711)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=346.97 Aligned_cols=382 Identities=58% Similarity=0.943 Sum_probs=284.3
Q ss_pred ccCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccc
Q 012535 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (461)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
...+.+|+|.|+|++.. +++.|.+.|++++|+|+|++||+|+.||.|+||++.+++... ....+++
T Consensus 6 ~~~~~~w~~~q~~~~~~--~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~~ 71 (447)
T 3dw8_B 6 GGNDIQWCFSQVKGAVD--DDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGEY 71 (447)
T ss_dssp --CCCCCEEEECCSCSS--SCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCE
T ss_pred CCcceeEEEEEeccccc--ccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------cccccce
Confidence 34678999999998743 478899999999999999999999999999999998765210 0112345
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
+....+.+|.+++++++++.+...|++++|+|..+..+|++++.|++|++|++.++..........
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-------------- 137 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLK-------------- 137 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------------
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceeccc--------------
Confidence 567789999999999999999999999999965433799999999999999998765432110000
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
..+|.. .....-..+.+.. +...+......+.+.+..+|...|.+++|+|++++|++
T Consensus 138 ---------~~~g~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 138 ---------EEDGRY-------------RDPTTVTTLRVPV-FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp ------------------------------CCCCCSCCCCE-EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred ---------Cccccc-------------cCcccccceEecc-ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 000100 0000000000000 00011112223344545789999999999999999999
Q ss_pred eCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccC
Q 012535 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
|.|+.|++||++.......++..++..+.+|...|++++|+|+++.+|++|+.||.|++||++++..+...+..+..+..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 99999999999866666666556666788899999999999997689999999999999999988754444566777665
Q ss_pred CCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
+.....+.+|...|.+++|+|+|++|++++++.|++||++..++++..+.+|......+...+..+.+++++.++|+|++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 55556677777899999999999999998779999999986588999999998777666666777777777789999999
Q ss_pred CEEEEecCCCeEEEEecCCCCccceeeccCCCCCc
Q 012535 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMS 445 (461)
Q Consensus 411 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 445 (461)
++|++|+.||.|++||+.+++.. .++.+..+.+
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~ 387 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRDI--TLEASRENNK 387 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCEE--EEECCSTTCC
T ss_pred CEEEEeccCCEEEEEEcCCCcce--eeeecccccc
Confidence 99999999999999999988654 5666655444
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.3e-45 Score=326.53 Aligned_cols=287 Identities=18% Similarity=0.290 Sum_probs=237.0
Q ss_pred ccccccceEEEEEcCC----CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhc
Q 012535 31 EVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
..+|.+.|++++|+|+ +++|++|+.|++|+||++.+++. .....+.+|.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~------ 80 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ------ 80 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS------
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC------
Confidence 4479999999999984 67999999999999999876431 1344678898
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..|.+++|+ +++.++++++.|++|++||+.+++.......+. ..+. +++|+|+++.+
T Consensus 81 ------~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~--------~~~~-------~~~~spdg~~l 137 (321)
T 3ow8_A 81 ------LGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP--------VDAW-------TLAFSPDSQYL 137 (321)
T ss_dssp ------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--------TCCC-------CEEECTTSSEE
T ss_pred ------CCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC--------ccEE-------EEEECCCCCEE
Confidence 789999999 557799999999999999999987766554331 2233 78999999985
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
++++.++.|++|+ +.... .... +..|...|.+++|+|++++|+++ .|+.|++||+++++
T Consensus 138 ------------~~g~~dg~v~i~~-~~~~~------~~~~-~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 138 ------------ATGTHVGKVNIFG-VESGK------KEYS-LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp ------------EEECTTSEEEEEE-TTTCS------EEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ------------EEEcCCCcEEEEE-cCCCc------eeEE-ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999999999 43221 2222 26778889999999999999999 89999999998654
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
... .+.+|...|.+++|+|++ ++|++|+.|+.|++||++.+.. ...+.+ |...|.
T Consensus 198 ~~~--------~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~~------------h~~~v~ 252 (321)
T 3ow8_A 198 LLH--------TLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGTLSG------------HASWVL 252 (321)
T ss_dssp EEE--------EECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCE----EEEECC------------CSSCEE
T ss_pred EEE--------EEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcce----eEEEcC------------CCCceE
Confidence 332 466789999999999998 9999999999999999988764 344444 448899
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
+++|+|++++|++|+ |++|++||+.+ ++++..+.+|...+ ++++|+|++++|++++.||.|+|
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVHTFFDHQDQV---------------WGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTCCEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEcCCCCcE---------------EEEEECCCCCEEEEEeCCCeEEE
Confidence 999999999999976 69999999996 88889998888765 59999999999999999999999
Q ss_pred EecC
Q 012535 425 FGCS 428 (461)
Q Consensus 425 w~~~ 428 (461)
||+.
T Consensus 317 wd~p 320 (321)
T 3ow8_A 317 YDCP 320 (321)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9974
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-44 Score=337.60 Aligned_cols=286 Identities=17% Similarity=0.302 Sum_probs=242.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.++|++++|+|++++|++|+.||+|+|||+.+++ ....+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----------------------~~~~l~~h~---------- 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----------------------FERTLKGHT---------- 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----------------------CCEEECCCS----------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEeccC----------
Confidence 45799999999999999999999999999999998775 345788898
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.+|++|+.|++|++||+.+++.......+ ...+. +++|+|++..+
T Consensus 151 --~~V~~v~~~--~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h--------~~~V~-------~v~~~p~~~~l---- 207 (410)
T 1vyh_C 151 --DSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRTMHGH--------DHNVS-------SVSIMPNGDHI---- 207 (410)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEECCCCC--------SSCEE-------EEEECSSSSEE----
T ss_pred --CcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC--------CCCEE-------EEEEeCCCCEE----
Confidence 789999999 56789999999999999999988766555443 23344 78999999885
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++++.|+.|++|| +.. ..+...+ .+|...|.+++++|++.+|++| .|+.|++||+++.+...
T Consensus 208 --------~s~s~D~~i~~wd-~~~------~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~- 270 (410)
T 1vyh_C 208 --------VSASRDKTIKMWE-VQT------GYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA- 270 (410)
T ss_dssp --------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred --------EEEeCCCeEEEEE-CCC------CcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee-
Confidence 9999999999999 432 2344444 7899999999999999999999 89999999998654332
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCC-------------------CCeEEEEecCCeEEEEECCCcccccccccccccccC
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTH-------------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~-------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
.+.+|...|.+++|+|++ ..+|++|+.|+.|++||++++.. +..+.+|
T Consensus 271 -------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h-- 337 (410)
T 1vyh_C 271 -------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGH-- 337 (410)
T ss_dssp -------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEEECC--
T ss_pred -------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce----EEEEECC--
Confidence 356789999999999962 16899999999999999998865 4455544
Q ss_pred CCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
...|.+++|+|+|++|++|+ |+.|++||+.+ ++++..+.+|...+ ++++|+|+
T Consensus 338 ----------~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~l~~~~~ 391 (410)
T 1vyh_C 338 ----------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKT 391 (410)
T ss_dssp ----------SSCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSS
T ss_pred ----------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcE---------------EEEEEcCC
Confidence 47899999999999999976 69999999986 88899999998775 59999999
Q ss_pred CCEEEEecCCCeEEEEecC
Q 012535 410 GGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~ 428 (461)
+.+|++|+.||.|++|+++
T Consensus 392 ~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEETTSEEEEEC--
T ss_pred CCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999863
No 4
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-44 Score=328.11 Aligned_cols=311 Identities=16% Similarity=0.263 Sum_probs=221.7
Q ss_pred cCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeec------CCcEEEEEcCCCCCCCCccccccccccccc
Q 012535 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMS 85 (461)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
.....|.+... ....|...|++++|||||++||+|+. |+.|++|+..++...
T Consensus 26 ~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~--------------- 83 (357)
T 4g56_B 26 SKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN--------------- 83 (357)
T ss_dssp ---------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C---------------
T ss_pred ccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc---------------
Confidence 33466877631 23469999999999999999999997 778999988765421
Q ss_pred CCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCC
Q 012535 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (461)
Q Consensus 86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (461)
..+.....+|. ..|.+++|+| ++ .+++++.||+|+|||+.+++........... ..+
T Consensus 84 ----~~~~~~~~~~~------------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~----h~~ 140 (357)
T 4g56_B 84 ----ESLCTAGVQTE------------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNKFAKYE----HDD 140 (357)
T ss_dssp ----GGGCSEEEECS------------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCCEEECC----CSS
T ss_pred ----eeEecccCCCC------------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEeeccCC----CCC
Confidence 12233345566 7799999995 44 5778899999999999887654333222111 133
Q ss_pred CccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC
Q 012535 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (461)
Q Consensus 166 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (461)
.|. +++|+|+++.+ ++++.|+.|++|| +.. ..+...+ .+|...|.+++|++++
T Consensus 141 ~V~-------~v~~spdg~~l------------~sgs~dg~v~iwd-~~~------~~~~~~~-~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 141 IVK-------TLSVFSDGTQA------------VSGGKDFSVKVWD-LSQ------KAVLKSY-NAHSSEVNCVAACPGK 193 (357)
T ss_dssp CEE-------EEEECSSSSEE------------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTC
T ss_pred CEE-------EEEECCCCCEE------------EEEeCCCeEEEEE-CCC------CcEEEEE-cCCCCCEEEEEEccCC
Confidence 455 88999999985 9999999999999 322 3344444 7899999999999987
Q ss_pred C-EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccc
Q 012535 246 E-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (461)
Q Consensus 246 ~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 323 (461)
. +++++ .|+.|++||+++.+....+ ....+...+.+++|+|++..+|++|+.|+.|++||+++++. +.
T Consensus 194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~ 263 (357)
T 4g56_B 194 DTIFLSCGEDGRILLWDTRKPKPATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQ 263 (357)
T ss_dssp SSCEEEEETTSCEEECCTTSSSCBCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CE
T ss_pred CceeeeeccCCceEEEECCCCceeeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eE
Confidence 5 67777 8999999999876654322 34557788999999998768999999999999999998765 45
Q ss_pred ccccccCCCccccccccccceeEEEEccCC-CEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccce
Q 012535 324 LFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (461)
.+..+. ..|++++|+|++ ++|++|+ |++|+|||+++ ++.+. ..+|...+
T Consensus 264 ~~~~~~------------~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~~~-~~~H~~~V--------------- 314 (357)
T 4g56_B 264 TSAVHS------------QNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEVFR-DLSHRDFV--------------- 314 (357)
T ss_dssp EECCCS------------SCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEEEE-ECCCSSCE---------------
T ss_pred EEeccc------------eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcEeE-ECCCCCCE---------------
Confidence 555544 789999999987 5788876 69999999985 55554 44677665
Q ss_pred eeEEEec-CCCEEEEecCCCeEEEEecCCCCcc
Q 012535 402 FECCLSG-DGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 402 ~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
++++|+| ++++|++|+.||.|++|++.+....
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 5999998 7999999999999999999765433
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-43 Score=319.42 Aligned_cols=286 Identities=16% Similarity=0.277 Sum_probs=232.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|++++|++|+.||+|+|||..+++ ....+..|.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----------------------~~~~~~~~~---------- 97 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----------------------KVHAIPLRS---------- 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----------------------EEEEEECSS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------------------cceEeecCC----------
Confidence 45799999999999999999999999999999987764 344566777
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce--eEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|.+++|+ +++.++++++.|+.|++|++.++.. ........+ .+.+. ++.|++++..
T Consensus 98 --~~v~~~~~s--~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h------~~~v~-------~~~~~~~~~l--- 157 (340)
T 1got_B 98 --SWVMTCAYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH------TGYLS-------CCRFLDDNQI--- 157 (340)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC------SSCEE-------EEEEEETTEE---
T ss_pred --ccEEEEEEC--CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC------CccEE-------EEEECCCCcE---
Confidence 779999999 5678999999999999999986532 111111111 23344 6778888763
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++++.|+.|++|| +.. ..+...+ .+|...|.+++|+|++++|++| .|+.|++||+++....
T Consensus 158 ----------~s~s~d~~i~~wd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~ 219 (340)
T 1got_B 158 ----------VTSSGDTTCALWD-IET------GQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp ----------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred ----------EEEECCCcEEEEE-CCC------CcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE
Confidence 8999999999999 422 2333443 7899999999999999999999 8999999999865433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
. .+.+|...|++++|+|++ ++|++|+.||+|++||++.++. +..+..+. +...|.++
T Consensus 220 ~--------~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~----------~~~~v~~~ 276 (340)
T 1got_B 220 Q--------TFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE----LMTYSHDN----------IICGITSV 276 (340)
T ss_dssp E--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCTT----------CCSCEEEE
T ss_pred E--------EEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE----EEEEccCC----------cccceEEE
Confidence 2 466799999999999998 9999999999999999998764 22222211 12579999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+|+|+|++|++|+ |+.|++||+.+ ++.+..+.+|...+ .+++|+|++.+|++|+.||.|+|||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEccc-CcEeeEeecCCCcE---------------EEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999987 59999999986 78888999998876 4999999999999999999999996
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-43 Score=317.55 Aligned_cols=313 Identities=13% Similarity=0.201 Sum_probs=223.0
Q ss_pred CceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccc
Q 012535 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (461)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
...|.+... ....|...|.+++|+|||++|++++ |+++++||.......... ..+.....
T Consensus 16 ~r~w~~~~~-------~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~------------~~~~~~~~ 75 (344)
T 4gqb_B 16 AREWNLPPN-------APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC------------AAPNEGFC 75 (344)
T ss_dssp -------CC-------SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG------------GTTCGGGC
T ss_pred ccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc------------ccCCccee
Confidence 356877531 1335778899999999999999887 778888874321000000 00000011
Q ss_pred ccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccc
Q 012535 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (461)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (461)
.....|+ ..|.+++|+| + ..|++|+.||+|+|||+.+++........... +.+.|.
T Consensus 76 ~~~~~~~------------~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~----H~~~V~----- 131 (344)
T 4gqb_B 76 SAGVQTE------------AGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSKFCKYE----HDDIVS----- 131 (344)
T ss_dssp SEEEEES------------SCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEEC----CSSCEE-----
T ss_pred eeeeccC------------CCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEeeccccC----CCCCEE-----
Confidence 1111222 6799999994 4 47899999999999999988755444322111 134455
Q ss_pred cCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-
Q 012535 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA- 251 (461)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~- 251 (461)
+++|+|+|+.+ ++++.|+.|++|| +.. .++...+ .+|...|.+++|++++. +|+++
T Consensus 132 --~v~~spdg~~l------------~sgs~d~~i~iwd-~~~------~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s 189 (344)
T 4gqb_B 132 --TVSVLSSGTQA------------VSGSKDICIKVWD-LAQ------QVVLSSY-RAHAAQVTCVAASPHKDSVFLSCS 189 (344)
T ss_dssp --EEEECTTSSEE------------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECSSCTTEEEEEE
T ss_pred --EEEECCCCCEE------------EEEeCCCeEEEEE-CCC------CcEEEEE-cCcCCceEEEEecCCCCCceeeec
Confidence 88999999986 9999999999999 432 3444454 89999999999999975 67888
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
.|++|++||+++.+....+ ....+...+.+++|+|++.++|++|+.||.|++||+++++. +.++..|.
T Consensus 190 ~D~~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~h~-- 257 (344)
T 4gqb_B 190 EDNRILLWDTRCPKPASQI------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAVHS-- 257 (344)
T ss_dssp TTSCEEEEETTSSSCEEEC------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEECCS--
T ss_pred cccccccccccccceeeee------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcCCC--
Confidence 8999999999977655432 23446677999999997668999999999999999998775 45555554
Q ss_pred CccccccccccceeEEEEccCC-CEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 332 GTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
..|++++|+|++ ++|++|+ |++|+|||+.+ ++ +..+.+|...+ ++++|+|+
T Consensus 258 ----------~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~-~~~~~~H~~~V---------------~~v~~sp~ 310 (344)
T 4gqb_B 258 ----------QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SE-LFRSQAHRDFV---------------RDATWSPL 310 (344)
T ss_dssp ----------SCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CE-EEEECCCSSCE---------------EEEEECSS
T ss_pred ----------CCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-Cc-EEEEcCCCCCE---------------EEEEEeCC
Confidence 889999999998 5788876 69999999985 44 45678888765 59999999
Q ss_pred CC-EEEEecCCCeEEEEecCCCC
Q 012535 410 GG-RVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 410 ~~-~l~s~~~dg~i~iw~~~~~~ 431 (461)
++ +|++|+.||.|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 86 57799999999999998653
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-42 Score=312.70 Aligned_cols=298 Identities=14% Similarity=0.194 Sum_probs=235.7
Q ss_pred ccccccceEEEEEcCCC-CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+.+|.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 65 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------- 65 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS---------
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc---------
Confidence 34799999999999965 89999999999999998653210 112345688898
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+ +++.+|++++.|++|++||+.+++....+..+ .+.+. +++|+|++..+
T Consensus 66 ---~~v~~~~~s--~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l--- 122 (319)
T 3frx_A 66 ---HIVQDCTLT--ADGAYALSASWDKTLRLWDVATGETYQRFVGH--------KSDVM-------SVDIDKKASMI--- 122 (319)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSCEE---
T ss_pred ---ccEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCCeeEEEccC--------CCcEE-------EEEEcCCCCEE---
Confidence 789999999 66889999999999999999999877665544 23455 78999999885
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC------CCEEEEe-CCCeEEEEEcc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD------GETFISA-DDLRINLWNLE 262 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~-~d~~i~iwd~~ 262 (461)
++++.|+.|++|| +. ..+...+ .+|...|.+++|.|. +..|+++ .|+.|++||++
T Consensus 123 ---------~s~s~D~~i~vwd-~~-------~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 123 ---------ISGSRDKTIKVWT-IK-------GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp ---------EEEETTSCEEEEE-TT-------SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred ---------EEEeCCCeEEEEE-CC-------CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 9999999999999 42 2233343 789999999999985 4478888 89999999998
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
+.+... .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++. +..+..+ .
T Consensus 185 ~~~~~~--------~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~-------------~ 238 (319)
T 3frx_A 185 QFQIEA--------DFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKA----MYTLSAQ-------------D 238 (319)
T ss_dssp TTEEEE--------EECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECC-------------S
T ss_pred cchhhe--------eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecCC-------------C
Confidence 554332 466799999999999999 9999999999999999998765 4444433 5
Q ss_pred ceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeE
Q 012535 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (461)
.|.+++|+|++.+|+++.++.+++|++.. ...+..+..+..... ......+.+++|+|||++|++|+.||.|
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCEEEEeecCceE
Confidence 79999999999999999888899999985 555554443221100 0001124589999999999999999999
Q ss_pred EEEecCCC
Q 012535 423 RVFGCSEG 430 (461)
Q Consensus 423 ~iw~~~~~ 430 (461)
+|||+.++
T Consensus 311 ~vWd~~t~ 318 (319)
T 3frx_A 311 RVWQVMTA 318 (319)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeec
Confidence 99999764
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.5e-42 Score=306.51 Aligned_cols=287 Identities=16% Similarity=0.195 Sum_probs=233.0
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|.+.|++++|+|++++||+|+.||+|+|||+.++. ....+..|.
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----------------------~~~~~~~~~----------- 55 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----------------------EVRSIQVTE----------- 55 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS-----------
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eeEEeeccC-----------
Confidence 4699999999999999999999999999999998764 345677787
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|.+++|+| ++++|++|+.|++|++||+.+++.......+ .+.+. +++|+|+++.+
T Consensus 56 -~~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l----- 112 (304)
T 2ynn_A 56 -TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH--------PDYIR-------SIAVHPTKPYV----- 112 (304)
T ss_dssp -SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSEE-----
T ss_pred -CcEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEEEeCC--------CCcEE-------EEEEcCCCCEE-----
Confidence 7799999994 5779999999999999999998877666544 23455 78999999985
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++++.|+.|++|| +... ...... +.+|...|.+++|+| ++..|++| .|+.|++||+++......
T Consensus 113 -------~sgs~D~~v~lWd-~~~~-----~~~~~~-~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 178 (304)
T 2ynn_A 113 -------LSGSDDLTVKLWN-WENN-----WALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178 (304)
T ss_dssp -------EEEETTSCEEEEE-GGGT-----TEEEEE-ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE
T ss_pred -------EEECCCCeEEEEE-CCCC-----cchhhh-hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence 9999999999999 4321 122233 479999999999999 57899998 899999999986655443
Q ss_pred eeccCCCCCCCCCcceEEEEEeC--CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
+ ..++...+..+.|+| ++ .+|++|+.|++|++||+++++. +.++.+|. ..|.++
T Consensus 179 ~-------~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h~------------~~v~~~ 234 (304)
T 2ynn_A 179 L-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEGHM------------SNVSFA 234 (304)
T ss_dssp E-------ECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTEE----EEEEECCS------------SCEEEE
T ss_pred e-------ccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCcc----ceeeCCCC------------CCEEEE
Confidence 2 234667889999987 55 7999999999999999998765 45555554 789999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC--EEEEecCCCeEEE
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSNLFRV 424 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~i 424 (461)
+|+|++++|++|+ |+.|++||+.+ ++.+..+..|...+ ++++|+|++. ++++|+.| .+.+
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~asg~~~-g~~~ 297 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLERS---------------WCIATHPTGRKNYIASGFDN-GFTV 297 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTT-CCEEEEECCSSSSE---------------EEEEECTTCGGGCEEEEETT-EEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCC-CceeeeccCCCccE---------------EEEEECCCCCceEEEEecCC-ceEE
Confidence 9999999999986 69999999996 88888888877654 5999999875 57777655 5678
Q ss_pred EecCCC
Q 012535 425 FGCSEG 430 (461)
Q Consensus 425 w~~~~~ 430 (461)
|++.+.
T Consensus 298 ~~~~~~ 303 (304)
T 2ynn_A 298 LSLGND 303 (304)
T ss_dssp EECC--
T ss_pred EEeccC
Confidence 887643
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-42 Score=338.12 Aligned_cols=368 Identities=16% Similarity=0.156 Sum_probs=260.3
Q ss_pred ceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCC-cccccccccccccCCcccccc
Q 012535 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG-QRRDLEMMDYSMSRHPEFRYK 93 (461)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 93 (461)
..|++... .......+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.... ....+.....++.|+|+.+.+
T Consensus 42 ~l~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 42 YTVPVGSL---TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp EEEETTCS---SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred EEecCCCc---ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence 45776531 12223457999999999999999999999999999999875442210 111233445567777776544
Q ss_pred c----------------------cccCCCcchhhccccccccceEEEEEeecCCCc-EEEEEeCCCeEEEEEccCCceeE
Q 012535 94 T----------------------EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKK 150 (461)
Q Consensus 94 ~----------------------~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vw~~~~~~~~~ 150 (461)
. .+.+|. ..|++++|+| ++. .|++++.|++|++||...+++..
T Consensus 119 ~~~~~~~~~~~~v~~wd~~~~~~~l~gh~------------~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDTGTSNGNLTGQA------------RAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp EEEECCSSCSEEEEETTTCCBCBCCCCCS------------SCEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred EEEECCCCceeEEEEeeCCCCcceecCCC------------CCceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEee
Confidence 3 234454 7899999995 444 69999999999999998877666
Q ss_pred EeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeee-
Q 012535 151 VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA- 229 (461)
Q Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~- 229 (461)
.+..| .+.|. +++|+|+|+.+ ++++.|+.|++|| +... .+...+.
T Consensus 185 ~l~~H--------~~~V~-------~v~fspdg~~l------------as~s~D~~i~lwd-~~~g------~~~~~~~~ 230 (611)
T 1nr0_A 185 TFGEH--------TKFVH-------SVRYNPDGSLF------------ASTGGDGTIVLYN-GVDG------TKTGVFED 230 (611)
T ss_dssp EECCC--------SSCEE-------EEEECTTSSEE------------EEEETTSCEEEEE-TTTC------CEEEECBC
T ss_pred eeccc--------cCceE-------EEEECCCCCEE------------EEEECCCcEEEEE-CCCC------cEeeeecc
Confidence 55543 33455 88999999985 9999999999999 4322 1222221
Q ss_pred -----cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee-------------------------------c
Q 012535 230 -----HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV-------------------------------D 272 (461)
Q Consensus 230 -----~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~-------------------------------~ 272 (461)
.+|...|.+++|+|++++|+++ .|++|++||+++.+....+. +
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 2799999999999999999999 89999999998654322110 0
Q ss_pred cC----CCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccc---------------------------
Q 012535 273 VK----PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--------------------------- 321 (461)
Q Consensus 273 ~~----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------- 321 (461)
.. ...+.+|...|++++|+|++ ++|++++.|++|++||+.++......
T Consensus 311 ~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~ 389 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 389 (611)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred CCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCc
Confidence 00 01345799999999999999 99999999999999999765421100
Q ss_pred ccccc--------------------------c-------------------------ccC--------C-Cc--------
Q 012535 322 SKLFE--------------------------E-------------------------QEA--------P-GT-------- 333 (461)
Q Consensus 322 ~~~~~--------------------------~-------------------------~~~--------~-~~-------- 333 (461)
++.+. . +.. + +.
T Consensus 390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D 469 (611)
T 1nr0_A 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469 (611)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence 00000 0 000 0 00
Q ss_pred ------------c--ccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeE--EeeccCccccccccccCC
Q 012535 334 ------------R--SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYEND 396 (461)
Q Consensus 334 ------------~--~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 396 (461)
. ....+|...|++++|+|||++|++++ |++|++||+...++.+.. +.+|...+
T Consensus 470 ~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V---------- 539 (611)
T 1nr0_A 470 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV---------- 539 (611)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE----------
T ss_pred CeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce----------
Confidence 0 01135888999999999999999976 699999999852333332 23366554
Q ss_pred CccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccc-eeeccC-CCCCccccc
Q 012535 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEAS-KNPMSLFLH 449 (461)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~-~~~~~~~~~ 449 (461)
++++|+|||++|++|+.|+.|+||++.+++... ..+.+| ...+.....
T Consensus 540 -----~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~f 589 (611)
T 1nr0_A 540 -----ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 589 (611)
T ss_dssp -----EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred -----eEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEE
Confidence 599999999999999999999999999876443 466677 565554433
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-42 Score=315.17 Aligned_cols=314 Identities=14% Similarity=0.143 Sum_probs=228.8
Q ss_pred cccc-ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 33 QEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 33 ~h~~-~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
.|.+ .|++++|+|+|++||+|+.|++|+|||+.++... .......+|.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~----------- 61 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ----------- 61 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS-----------
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC-----------
Confidence 5777 8999999999999999999999999998765311 0111236787
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|.+++|+ +++.+|++++.|++|++|++..+..........+ .+.|. +++|+|+++.+
T Consensus 62 -~~v~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h------~~~v~-------~v~~sp~~~~l----- 120 (345)
T 3fm0_A 62 -RTVRKVAWS--PCGNYLASASFDATTCIWKKNQDDFECVTTLEGH------ENEVK-------SVAWAPSGNLL----- 120 (345)
T ss_dssp -SCEEEEEEC--TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC------SSCEE-------EEEECTTSSEE-----
T ss_pred -CcEEEEEEC--CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC------CCCce-------EEEEeCCCCEE-----
Confidence 789999999 5688999999999999999987754443333222 23455 88999999985
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
++++.|+.|++|| +.... ...+... +.+|...|.+++|+|++++|+++ .|+.|++||.+..+....
T Consensus 121 -------~s~s~D~~v~iwd-~~~~~---~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~- 187 (345)
T 3fm0_A 121 -------ATCSRDKSVWVWE-VDEED---EYECVSV-LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC- 187 (345)
T ss_dssp -------EEEETTSCEEEEE-ECTTS---CEEEEEE-ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-
T ss_pred -------EEEECCCeEEEEE-CCCCC---CeEEEEE-ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-
Confidence 9999999999999 53322 2233333 37899999999999999999999 899999999985432211
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccc-cccceeEEEE
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKF 349 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~ 349 (461)
..+.+|...|++++|+|++ ++|++|+.|++|++||......... +..............+.+ |...|.+++|
T Consensus 188 -----~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 260 (345)
T 3fm0_A 188 -----ATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQG-VACSGSDPSWKCICTLSGFHSRTIYDIAW 260 (345)
T ss_dssp -----EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTC-CCCC---CEEEEEEEECSSCSSCEEEEEE
T ss_pred -----EEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCcc-ceeeccCCccceeEEecCCCCCcEEEEEE
Confidence 1467899999999999999 9999999999999999744321100 000000000000111222 6688999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCC---CCeeEE-----eeccCccccccccccCCCccceeeEEEecCC-CEEEEecCC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDS---GPVATF-----QVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYS 419 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d 419 (461)
+|++.+|++++ |+.|++|+..... .+...+ .+|... |.+++|+|++ .+|++|+.|
T Consensus 261 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~---------------V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD---------------VNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC---------------EEEEEECSSSTTEEEEEETT
T ss_pred ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc---------------EeEeEEeCCCceEEEEcCCC
Confidence 99999999875 6999999987421 122222 244444 3599999998 599999999
Q ss_pred CeEEEEecCCCCcc
Q 012535 420 NLFRVFGCSEGSAE 433 (461)
Q Consensus 420 g~i~iw~~~~~~~~ 433 (461)
|.|++|++.+++..
T Consensus 326 g~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 326 GEVAFWKYQRPEGL 339 (345)
T ss_dssp SCEEEEEECC----
T ss_pred CcEEEEEecCCCCc
Confidence 99999999987654
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-42 Score=319.23 Aligned_cols=309 Identities=17% Similarity=0.257 Sum_probs=231.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|++++||+|+.||+|+|||..+++ ....+..|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----------------------~~~~~~~h~---------- 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----------------------KTHAIKLHC---------- 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----------------------EEEEEECCC----------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------cceEEecCC----------
Confidence 45799999999999999999999999999999987764 345677887
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.++++|+.|+.+++|++......... ...........+.+. ++.|.|++...
T Consensus 109 --~~v~~~~~s--~~g~~las~~~d~~v~iw~~~~~~~~~~~-~~~~~~~~gh~~~v~-------~~~~~~~~~~~---- 172 (380)
T 3iz6_a 109 --PWVMECAFA--PNGQSVACGGLDSACSIFNLSSQADRDGN-MPVSRVLTGHKGYAS-------SCQYVPDQETR---- 172 (380)
T ss_dssp --TTCCCCEEC--TTSSEEEECCSSSCCEEEECCCCSSCCCS-STTCCBCCCCSSCCC-------CCBCCSSSSSC----
T ss_pred --CCEEEEEEC--CCCCEEEEeeCCCcEEEEECCCCccccCC-ccceeeccCCCcceE-------EEEEecCCCCE----
Confidence 779999999 56889999999999999998753211000 000000000122233 56777765432
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++++.|+.|++|| +....... .....+..+|...|.+++|++ ++++|++| .|+.|++||++......
T Consensus 173 -------l~s~s~D~~i~~wd-~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 173 -------LITGSGDQTCVLWD-VTTGQRIS--IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp -------EEEECTTSCEEEEC-TTTCCEEE--EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred -------EEEECCCCcEEEEE-cCCCcEEE--EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 59999999999999 43322110 000111257899999999987 78899999 89999999998554443
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
. .+.+|...|++++|+|++ .+|++|+.||+|++||++++.. +..+..+... ...+...|++++
T Consensus 243 ~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~-----~~~~~~~v~~~~ 305 (380)
T 3iz6_a 243 R-------TYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDR-----NDNELPIVTSVA 305 (380)
T ss_dssp E-------EECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEE----EEEECCCCSS-----SCCSSCSCSEEE
T ss_pred E-------EECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcE----EEEecccccc-----cccccCceEEEE
Confidence 3 467799999999999999 9999999999999999998865 3333322110 111224589999
Q ss_pred EccCCCEEEEec-CCeEEEEEccCCCCCeeEE----eeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEE
Q 012535 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (461)
|+|+|++|++|+ ||.|++||+.. ++.+..+ .+|...+ .+++|+|+|++|++|+.||.|+
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRI---------------SCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCC---------------CEEEECSSSSEEEEECTTSCEE
T ss_pred ECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCce---------------EEEEECCCCCEEEEeeCCCCEE
Confidence 999999999986 69999999985 6666666 4566554 4999999999999999999999
Q ss_pred EEecCCCC
Q 012535 424 VFGCSEGS 431 (461)
Q Consensus 424 iw~~~~~~ 431 (461)
||++...+
T Consensus 370 iW~~~~~~ 377 (380)
T 3iz6_a 370 IWAFSGHR 377 (380)
T ss_dssp EEECCSSS
T ss_pred EEecCCCc
Confidence 99998654
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-41 Score=310.74 Aligned_cols=286 Identities=17% Similarity=0.270 Sum_probs=230.7
Q ss_pred cccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...+|.+.|++++|+|++++||+|+.||+|+|||..+++ ....+..|.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-----------------------~~~~~~~~~--------- 106 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----------------------KEHAVTMPC--------- 106 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECSS---------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------cceEEecCC---------
Confidence 345799999999999999999999999999999987654 233455566
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc------eeEEeeeecCCCccCCCCCccccccccCcceeecCC
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (461)
..|.+++|+ +++.++++++.|+.+++|++.... .......+ .+.+. +++|+|++
T Consensus 107 ---~~v~~~~~s--p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~ 166 (354)
T 2pbi_B 107 ---TWVMACAYA--PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH--------TNYLS-------ACSFTNSD 166 (354)
T ss_dssp ---SCCCEEEEC--TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC--------SSCEE-------EEEECSSS
T ss_pred ---CCEEEEEEC--CCCCEEEEeeCCCCEEEEEEeccccccccccceeeecc--------CCcEE-------EEEEeCCC
Confidence 669999999 568899999999999999986432 11122222 23344 77899999
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC--CCCEEEEe-CCCeEEEEE
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWN 260 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd 260 (461)
..+ ++++.|+.|++|| +.. .++...+ .+|...|.+++|+| ++++|++| .|+.|++||
T Consensus 167 ~~l------------~t~s~D~~v~lwd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd 226 (354)
T 2pbi_B 167 MQI------------LTASGDGTCALWD-VES------GQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226 (354)
T ss_dssp SEE------------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred CEE------------EEEeCCCcEEEEe-CCC------CeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 875 9999999999999 432 2333443 78999999999987 46899999 899999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
+++++... .+.+|...|++++|+|++ .+|++|+.|++|++||++.... +..+..+. +
T Consensus 227 ~~~~~~~~--------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~----~~~~~~~~----------~ 283 (354)
T 2pbi_B 227 MRSGQCVQ--------AFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADRE----VAIYSKES----------I 283 (354)
T ss_dssp TTTCCEEE--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCTT----------C
T ss_pred CCCCcEEE--------EecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE----EEEEcCCC----------c
Confidence 98655332 356799999999999998 9999999999999999988754 22222221 1
Q ss_pred ccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
...+.+++|+|+|++|++|+ |+.|++||+.+ ++.+..+.+|...+ .+++|+|++++|++|+.|
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v---------------~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLK-GSRVSILFGHENRV---------------STLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSCEEEEETT
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEECCC-CceEEEEECCCCcE---------------EEEEECCCCCEEEEEcCC
Confidence 24689999999999999986 69999999986 78888898998776 499999999999999999
Q ss_pred CeEEEEe
Q 012535 420 NLFRVFG 426 (461)
Q Consensus 420 g~i~iw~ 426 (461)
|.|+||+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999996
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.7e-41 Score=307.48 Aligned_cols=304 Identities=13% Similarity=0.203 Sum_probs=228.4
Q ss_pred ccccccceEEEEE-----cC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchh
Q 012535 31 EVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (461)
Q Consensus 31 ~~~h~~~V~~~~~-----s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (461)
..+|.+.|++++| ++ ++++||+|+.|++|+|||+...+..+ ........+.+|.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~---- 76 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN---- 76 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS----
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC----
Confidence 3479999999999 77 99999999999999999987653210 0012345678898
Q ss_pred hccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 105 ~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
..|.+++|+ +++.++++++.|++|++||+++++....+..+ .+.+. +++|+|+++
T Consensus 77 --------~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h--------~~~v~-------~v~~sp~~~ 131 (343)
T 2xzm_R 77 --------HFVSDLALS--QENCFAISSSWDKTLRLWDLRTGTTYKRFVGH--------QSEVY-------SVAFSPDNR 131 (343)
T ss_dssp --------SCEEEEEEC--SSTTEEEEEETTSEEEEEETTSSCEEEEEECC--------CSCEE-------EEEECSSTT
T ss_pred --------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--------CCcEE-------EEEECCCCC
Confidence 789999999 56789999999999999999998876665544 33455 789999999
Q ss_pred cccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEee--ecccccceeeEEeCCCC----------CEEEEe-
Q 012535 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDG----------ETFISA- 251 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~----------~~l~~~- 251 (461)
.+ ++++.|+.|++|| +.. .+.... ..+|...|.+++|+|++ .+|+++
T Consensus 132 ~l------------~s~~~d~~i~~wd-~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 132 QI------------LSAGAEREIKLWN-ILG-------ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp EE------------EEEETTSCEEEEE-SSS-------CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred EE------------EEEcCCCEEEEEe-ccC-------CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence 85 9999999999999 431 111111 14788899999999986 688988
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
.|+.|++||.. .+ ... .+.+|...|.+++|+|++ ++|++|+.||.|++||++..... ...+..
T Consensus 192 ~d~~i~iwd~~-~~-~~~-------~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~---- 254 (343)
T 2xzm_R 192 WDGRLKVWNTN-FQ-IRY-------TFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA---- 254 (343)
T ss_dssp TTSEEEEEETT-TE-EEE-------EEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC----
T ss_pred CCCEEEEEcCC-Cc-eeE-------EEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC----
Confidence 89999999954 22 211 356789999999999999 99999999999999999543321 122211
Q ss_pred CccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCee--EEeeccCccccccccccCCCccceeeEEEecC
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
...|.+++|+|++++|+++.|+.|++||+.+ ++... .+..+.. ...... ......|.+++|+|+
T Consensus 255 ---------~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~--~~~~~~--~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 255 ---------GSTINQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPI--TKAEGQ--KGKNPQCTSLAWNAL 320 (343)
T ss_dssp ---------SSCEEEEEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSG--GGBTTB--CCSCCCEEEEEECSS
T ss_pred ---------CCcEEEEEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcc--hhhhhh--cCCCCceEEEEECCC
Confidence 1469999999999999988898999999985 44433 3321110 000000 001112469999999
Q ss_pred CCEEEEecCCCeEEEEecCCC
Q 012535 410 GGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+++|++|+.||.|++|++.++
T Consensus 321 g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEEcc
Confidence 999999999999999998765
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-40 Score=302.39 Aligned_cols=302 Identities=14% Similarity=0.195 Sum_probs=230.9
Q ss_pred ccccccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+|.+.|++|+|+|+ +++||||+.||+|+|||+...+.. .......+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~--------- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS--------- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS---------
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC---------
Confidence 3479999999999997 689999999999999999876432 122445678898
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+ +++.+|++++.|+.|++|+............... .+. ...+++++..+
T Consensus 87 ---~~V~~~~~s--~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~l--- 143 (340)
T 4aow_A 87 ---HFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK--------DVL-------SVAFSSDNRQI--- 143 (340)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEE-------EEEECTTSSCE---
T ss_pred ---CCEEEEEEC--CCCCEEEEEcccccceEEeecccceeeeecCCCC--------cee-------EEEEeecCccc---
Confidence 789999999 5688999999999999999988776555443321 122 45667777764
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC--CEEEEe-CCCeEEEEEccCCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
++++.|+.+++|| +.. .........+|...+..++|++++ .+++++ .|+.|++||+++.+.
T Consensus 144 ---------~s~s~d~~~~~~d-~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 144 ---------VSGSRDKTIKLWN-TLG------VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp ---------EEEETTSCEEEEC-TTS------CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred ---------eeecCCCeEEEEE-eCC------CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence 9999999999999 322 111222247889999999998874 567777 899999999986543
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.. .+.+|...|++++|+|++ ++|++|+.||.|++||+++.+. +..+..+ ..|.+
T Consensus 208 ~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~-------------~~v~~ 261 (340)
T 4aow_A 208 KT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDGG-------------DIINA 261 (340)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECS-------------SCEEE
T ss_pred ee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecCC-------------ceEEe
Confidence 32 356799999999999999 9999999999999999998765 4444443 57999
Q ss_pred EEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 347 l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+.|+|++.+++++.|+.|++||++. +..+..+..+..... .......|++++|+||+++|++|+.||.|+|||
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999888888899999999985 555555543221110 001112346999999999999999999999999
Q ss_pred cCCCC
Q 012535 427 CSEGS 431 (461)
Q Consensus 427 ~~~~~ 431 (461)
+++|+
T Consensus 335 ~~tGt 339 (340)
T 4aow_A 335 VTIGT 339 (340)
T ss_dssp EEC--
T ss_pred CCCcC
Confidence 99885
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-40 Score=309.16 Aligned_cols=315 Identities=14% Similarity=0.244 Sum_probs=229.3
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcc------hhh
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE------FDY 105 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~ 105 (461)
+.|.+.|+|++|+|||++||+|+ ++.++||++.+++.. ..+..|... +..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence 46999999999999999999987 679999999876532 112211100 000
Q ss_pred ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
.........|.+++|+ +++.+|++|+.|++|++||+.+++.......+ .+.+. +++|+|++..
T Consensus 117 ~~~~~~~~~v~~v~~s--~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h--------~~~v~-------~~~~~p~~~~ 179 (393)
T 1erj_A 117 SSSPSSDLYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMILQGH--------EQDIY-------SLDYFPSGDK 179 (393)
T ss_dssp ----CCCCBEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEECTTSSE
T ss_pred cccCCCceeEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEccC--------CCCEE-------EEEEcCCCCE
Confidence 0000111459999999 56889999999999999999998876665544 23355 7899999998
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~ 263 (461)
+ ++++.|+.|++|| +.. ..+...+ .+...+.+++|+| ++++|+++ .|+.|++||+++
T Consensus 180 l------------~s~s~d~~v~iwd-~~~------~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 180 L------------VSGSGDRTVRIWD-LRT------GQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp E------------EEEETTSEEEEEE-TTT------TEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred E------------EEecCCCcEEEEE-CCC------CeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 5 9999999999999 432 2222222 3557799999999 89999999 899999999986
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
+..... +........+|...|.+++|+|++ ++|++|+.|+.|++||++..... ..............+.+|...
T Consensus 239 ~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~----~~~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 239 GFLVER-LDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNK----SDSKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp CCEEEE-EC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSC
T ss_pred CcEEEe-ecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCc----ccccCCCCCcceEEEecccCc
Confidence 543322 111112235789999999999999 99999999999999999875431 111111111112345677789
Q ss_pred eeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec------CCCEEEEe
Q 012535 344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG------DGGRVATG 416 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~ 416 (461)
|.+++|+|++++|++|+ |+.|++||+.+ ++++..+.+|...+ .+++|++ ++++|++|
T Consensus 313 v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 313 VLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEE
Confidence 99999999999999976 69999999996 88899999998776 4888875 68899999
Q ss_pred cCCCeEEEEecCCC
Q 012535 417 SYSNLFRVFGCSEG 430 (461)
Q Consensus 417 ~~dg~i~iw~~~~~ 430 (461)
+.||.|+||++...
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999998643
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-39 Score=293.27 Aligned_cols=289 Identities=16% Similarity=0.297 Sum_probs=233.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|++++||+|+.||.|++|+..+++ ....+.+|.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~---------- 65 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK---------- 65 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC----------
Confidence 34799999999999999999999999999999987654 445677888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.+|++++.|+.|++||+++++.......+ ...+. +++|+|++..+
T Consensus 66 --~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~l---- 122 (312)
T 4ery_A 66 --LGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--------SNYVF-------CCNFNPQSNLI---- 122 (312)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSEE----
T ss_pred --CceEEEEEc--CCCCEEEEECCCCEEEEEECCCCcEEEEEcCC--------CCCEE-------EEEEcCCCCEE----
Confidence 779999999 56789999999999999999998876665543 22344 77899999885
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++++.|+.|++|| +.. ..+...+ ..|...|.+++|+|++++|+++ .|+.|++||+++.+....
T Consensus 123 --------~s~~~d~~i~iwd-~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 186 (312)
T 4ery_A 123 --------VSGSFDESVRIWD-VKT------GKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186 (312)
T ss_dssp --------EEEETTSCEEEEE-TTT------CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --------EEEeCCCcEEEEE-CCC------CEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE
Confidence 9999999999999 432 2233333 7888999999999999999999 899999999986554432
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+ ...+...+..++|+|++ ++|++++.|+.|++||+++++. +..+..+... ...+.....
T Consensus 187 ~-------~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~---------~~~~~~~~~ 245 (312)
T 4ery_A 187 L-------IDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKC----LKTYTGHKNE---------KYCIFANFS 245 (312)
T ss_dssp E-------CCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE----EEEECSSCCS---------SSCCCEEEE
T ss_pred E-------eccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEEecCCc---------eEEEEEEEE
Confidence 2 23466789999999999 9999999999999999998765 4444444311 011222333
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec--CCCeEEEEe
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFG 426 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~ 426 (461)
.+++.+|++|+ |+.|++||+.+ ++.+..+.+|...+ ++++|+|++++|++++ .|+.|++|+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred eCCCcEEEEECCCCEEEEEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEec
Confidence 46788999976 69999999996 88899999998765 5999999999999986 699999998
Q ss_pred cC
Q 012535 427 CS 428 (461)
Q Consensus 427 ~~ 428 (461)
.+
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.2e-40 Score=321.94 Aligned_cols=319 Identities=13% Similarity=0.149 Sum_probs=235.2
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.+.+.+.+++|+|||++||+++ ++.|+||++.+++ ....+.+|.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~-----------------------~~~~~~~h~------------ 59 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-----------------------DTEIYTEHS------------ 59 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS-----------------------CCEEECCCS------------
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcc-----------------------cCeEecCCC------------
Confidence 4678889999999999999998 5699999997654 345688998
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|++++|+ ++|.+|++|+.|++|+|||+.+++.........+ .+.|. +++|+|+|+.+
T Consensus 60 ~~v~~~~~s--pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~------~~~v~-------~v~fs~dg~~l------ 118 (611)
T 1nr0_A 60 HQTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF------SGPVK-------DISWDSESKRI------ 118 (611)
T ss_dssp SCEEEEEEC--TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS------SSCEE-------EEEECTTSCEE------
T ss_pred CceEEEEEC--CCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc------CCceE-------EEEECCCCCEE------
Confidence 789999999 5688999999999999999976543322222221 34455 88999999985
Q ss_pred CCCCccccccCC----CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCC
Q 012535 193 ASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 193 ~~~~~~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~ 266 (461)
++++.+ +.|++|| ... .... +.+|...|.+++|+|++. .|+++ .|++|++||..+.+.
T Consensus 119 ------~~~~~~~~~~~~v~~wd-~~~--------~~~~-l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~ 182 (611)
T 1nr0_A 119 ------AAVGEGRERFGHVFLFD-TGT--------SNGN-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 182 (611)
T ss_dssp ------EEEECCSSCSEEEEETT-TCC--------BCBC-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred ------EEEECCCCceeEEEEee-CCC--------Ccce-ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE
Confidence 666544 4788887 211 1122 378999999999999987 58888 899999999875432
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.. .+.+|...|++++|+|++ ++|++|+.|++|++||+.+++. +..+... .....+|.+.|.+
T Consensus 183 ~~--------~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~----~~~~~~~-----~~~~~~h~~~V~~ 244 (611)
T 1nr0_A 183 KS--------TFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTK----TGVFEDD-----SLKNVAHSGSVFG 244 (611)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEECBCT-----TSSSCSSSSCEEE
T ss_pred ee--------eeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcE----eeeeccc-----cccccccCCCEEE
Confidence 21 467899999999999999 9999999999999999988764 2333210 0112256789999
Q ss_pred EEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccc---------------------cc-------cccCCC
Q 012535 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL---------------------CD-------LYENDS 397 (461)
Q Consensus 347 l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---------------------~~-------~~~~~~ 397 (461)
++|+|+|++|++++ |++|++||+.+ ++.+..+..+....... .+ ......
T Consensus 245 v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh 323 (611)
T 1nr0_A 245 LTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence 99999999999976 69999999986 66665554321110000 00 000011
Q ss_pred ccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCC
Q 012535 398 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 443 (461)
Q Consensus 398 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 443 (461)
...|.+++|+|++++|++++.|+.|++||+.+++........|...
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence 2245799999999999999999999999999886543322444433
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=294.45 Aligned_cols=298 Identities=13% Similarity=0.153 Sum_probs=213.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccc-cC-CCcchhhccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QS-HEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~ 108 (461)
..+|.+.|++++|+|+ +||+|+.|++|+|||+..+.. .....+ .+ |.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------- 58 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------- 58 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence 3479999999999987 999999999999999876421 122233 33 77
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC-------ceeEEeeeecCCCccCCCCCccccccccCcceeec
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (461)
..|.+++|+ +++.+|++++.|++|++|++... +....+..+ .+.|. +++|+|
T Consensus 59 ----~~v~~v~~s--p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h--------~~~V~-------~v~~sp 117 (330)
T 2hes_X 59 ----KAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH--------ENEVK-------GVAWSN 117 (330)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------------CEE-------EEEECT
T ss_pred ----CCEEEEEEC--CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC--------CCcEE-------EEEECC
Confidence 779999999 56789999999999999998642 122222222 23455 789999
Q ss_pred CCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEE
Q 012535 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (461)
Q Consensus 182 ~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (461)
+|+.+ ++++.|+.|++|| +... .....+...+ .+|...|.+++|+|++.+|+++ .|++|++||
T Consensus 118 ~g~~l------------as~s~D~~v~iwd-~~~~--~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 118 DGYYL------------ATCSRDKSVWIWE-TDES--GEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181 (330)
T ss_dssp TSCEE------------EEEETTSCEEEEE-CCTT--CCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CCCEE------------EEEeCCCEEEEEe-ccCC--CCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99985 9999999999999 4221 1122334443 7899999999999999999999 899999999
Q ss_pred ccCCC-CceeeeccCCCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccc
Q 012535 261 LEISN-QSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (461)
Q Consensus 261 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (461)
..... .... .+.+|...|.+++|+|+ + .+|++|+.|++|++||++.+..... .... ....+
T Consensus 182 ~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~------~~~~~ 245 (330)
T 2hes_X 182 DYDDDWECVA-------VLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQ--QEWV------CEAIL 245 (330)
T ss_dssp EETTEEEEEE-------EECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSC--EEEE------EEEEC
T ss_pred CCCCCeeEEE-------EccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCcccc--ceeE------Eeeec
Confidence 87542 1222 46789999999999998 5 6899999999999999876431100 0000 00111
Q ss_pred c-ccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCC--CeeE-EeeccC-ccccccccccCCCccceeeEEEec--C
Q 012535 338 T-EIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG--PVAT-FQVHEH-LRPKLCDLYENDSIFDKFECCLSG--D 409 (461)
Q Consensus 338 ~-~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~ 409 (461)
. .|...|.+++|++++ +|+++ .|+.|++||... ++ .+.. +.+|.. . |.+++|+| +
T Consensus 246 ~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~---------------v~~v~~~~~~~ 308 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD-GEWKVFAKRALCHGVYE---------------INVVKWLELNG 308 (330)
T ss_dssp CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET-TEEEEEEEESCTTTTSC---------------EEEEEEC----
T ss_pred ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC-CceEEEeccccccccce---------------EEEEEEecCCC
Confidence 2 256889999999766 66665 579999999974 42 2222 234443 2 35899999 7
Q ss_pred CCEEEEecCCCeEEEEecCC
Q 012535 410 GGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~~ 429 (461)
+++|++|+.||.|+||+++.
T Consensus 309 ~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 309 KTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEecCCCcEEEEEecc
Confidence 89999999999999999864
No 19
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.9e-40 Score=309.13 Aligned_cols=306 Identities=11% Similarity=0.054 Sum_probs=218.4
Q ss_pred cccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~---------- 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG---------- 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS----------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC----------
Confidence 35788899999999 5679999999999999999876532 334567888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|++|+|+| .++.+|++++.||+|++||++++........+.. ...+. +++|+|++..+
T Consensus 165 --~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~-------~~~~~~~~~~l---- 224 (435)
T 4e54_B 165 --GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI------NIWFC-------SLDVSASSRMV---- 224 (435)
T ss_dssp --CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC------SCCCC-------CEEEETTTTEE----
T ss_pred --CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC------CccEE-------EEEECCCCCEE----
Confidence 8899999996 3577999999999999999987765444333221 11122 78899999985
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCce
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
++|+.||.|++|| +... .... +.+|...|.+++|+|+++ +|+++ .|+.|++||+++.+...
T Consensus 225 --------~~g~~dg~i~~wd-~~~~-------~~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 225 --------VTGDNVGNVILLN-MDGK-------ELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp --------EEECSSSBEEEEE-SSSC-------BCCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred --------EEEeCCCcEeeec-cCcc-------eeEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 9999999999999 4321 1222 378999999999999976 67777 89999999998665443
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc--c---cccccccc
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR--S---FFTEIIAS 343 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~h~~~ 343 (461)
.+ ....+|...|++++|+|++ .+|++++.||.|++||++++... ..+..+...... . ........
T Consensus 288 ~~-----~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (435)
T 4e54_B 288 SF-----LYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQHLTPIKAAWHPRYN 357 (435)
T ss_dssp CC-----SBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCSSSCCCBCEECSSSS
T ss_pred eE-----EEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccccceeEEEEEcCCCC
Confidence 22 1345689999999999999 99999999999999999987642 222222111000 0 00001122
Q ss_pred eeEEEEccCCCEEEEe-cC-CeEEEEEccCCCCCeeEEe-eccCccccccccccCCCccceeeE-EEecCCCEEEEecCC
Q 012535 344 ISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFEC-CLSGDGGRVATGSYS 419 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~-~d-~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~d 419 (461)
+..+.+++++..++++ .+ +.|++||..+ ++.+..+. +|...+ .++ +|+|+|++|++|+ |
T Consensus 358 ~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d 420 (435)
T 4e54_B 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-G 420 (435)
T ss_dssp CEEEECCCCTTSCCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-S
T ss_pred EEEEEEcCCCCeEEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-C
Confidence 3333444444444332 23 6899999986 77777664 454443 255 6999999999886 7
Q ss_pred CeEEEEecCCCCc
Q 012535 420 NLFRVFGCSEGSA 432 (461)
Q Consensus 420 g~i~iw~~~~~~~ 432 (461)
+.|+||++++++.
T Consensus 421 ~~i~iW~~~~gk~ 433 (435)
T 4e54_B 421 YHILIWSQQEART 433 (435)
T ss_dssp SEEEECCCC----
T ss_pred CcEEEEECCcCee
Confidence 8999999998754
No 20
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-39 Score=322.53 Aligned_cols=307 Identities=14% Similarity=0.220 Sum_probs=234.9
Q ss_pred ccccccceEEEEEcCCC-CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...|.+.|++++|+|++ ++|++|+.||+|+||++...... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS--------- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS---------
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC---------
Confidence 34799999999999864 79999999999999998765321 111334678888
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+ +++.+|++|+.|++|++||+.+++.......| .+.|. +++|+|+++.+
T Consensus 431 ---~~v~~v~~s--~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h--------~~~v~-------~~~~s~~~~~l--- 487 (694)
T 3dm0_A 431 ---HFVEDVVLS--SDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--------TKDVL-------SVAFSLDNRQI--- 487 (694)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSSCE---
T ss_pred ---CcEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCcceeEEeCC--------CCCEE-------EEEEeCCCCEE---
Confidence 789999999 56889999999999999999998776665544 33455 78999999985
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC--CEEEEe-CCCeEEEEEccCCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
++++.|+.|++|| +... ..... .....+|...|.+++|+|++ ..|+++ .|+.|++||+++.+.
T Consensus 488 ---------~s~s~D~~i~iwd-~~~~---~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 488 ---------VSASRDRTIKLWN-TLGE---CKYTI-SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp ---------EEEETTSCEEEEC-TTSC---EEEEE-CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred ---------EEEeCCCEEEEEE-CCCC---cceee-ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 9999999999999 3211 11001 11125788999999999986 578888 899999999985543
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
.. .+.+|...|++++|+|++ ++|++|+.||.|++||+++++. +..+..+ ..|.+
T Consensus 554 ~~--------~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~----~~~~~~~-------------~~v~~ 607 (694)
T 3dm0_A 554 RS--------TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKK----LYSLEAN-------------SVIHA 607 (694)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEE----EECCBCS-------------SCEEE
T ss_pred EE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce----EEEecCC-------------CcEEE
Confidence 32 467799999999999999 9999999999999999998875 3444333 56999
Q ss_pred EEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCcccccc----ccccCCCccceeeEEEecCCCEEEEecCCCeE
Q 012535 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC----DLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (461)
Q Consensus 347 l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (461)
++|+|++.+|++++++.|++||+++ +..+..+..+........ ..........+.+++|+|+|++|++|+.||.|
T Consensus 608 ~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 608 LCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 9999999999999888899999986 676666654432110000 00011112235689999999999999999999
Q ss_pred EEEecC
Q 012535 423 RVFGCS 428 (461)
Q Consensus 423 ~iw~~~ 428 (461)
+||++.
T Consensus 687 ~iW~i~ 692 (694)
T 3dm0_A 687 RVWGIG 692 (694)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 999985
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-38 Score=310.95 Aligned_cols=277 Identities=17% Similarity=0.323 Sum_probs=228.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|...|.+++|+|++++|++++.||.|++||..+.. ...+.+|.
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~------------------------~~~~~~~~---------- 344 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH------------------------LQTLTGHS---------- 344 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE------------------------EEEECCCS----------
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe------------------------eEEEeCCC----------
Confidence 34689999999999999999999999999999976542 33567777
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.++++++.|+.|++|+... +.......+ ...+. +++|+|+|+.+
T Consensus 345 --~~v~~~~~s--~~g~~l~~~~~dg~v~~~~~~~-~~~~~~~~~--------~~~v~-------~~~~s~dg~~l---- 400 (577)
T 2ymu_A 345 --SSVWGVAFS--PDGQTIASASDDKTVKLWNRNG-QLLQTLTGH--------SSSVR-------GVAFSPDGQTI---- 400 (577)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTC-CEEEEEECC--------SSCEE-------EEEECTTSSCE----
T ss_pred --CCEEEEEEC--CCCCEEEEEeCCCEEEEEcCCC-CEEEEecCC--------CCCeE-------EEEECCCCCEE----
Confidence 779999999 5688999999999999999654 444433332 23344 78999999985
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++++.|+.|++|| . . .+....+ .+|...|.+++|+|++++|+++ .|+.|++||.. .+ ...
T Consensus 401 --------~~~~~d~~v~~~~-~---~----~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~-~~~ 461 (577)
T 2ymu_A 401 --------ASASDDKTVKLWN-R---N----GQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQ-LLQ 461 (577)
T ss_dssp --------EEEETTSEEEEEC-T---T----CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SC-EEE
T ss_pred --------EEEeCCCEEEEEe-C---C----CCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CC-EEE
Confidence 9999999999999 3 1 2233333 7899999999999999999999 89999999975 33 222
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+.+|...|++++|+|++ ++|++++.|+.|++||.. ++. +..+..| ...|++++|
T Consensus 462 -------~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~~----~~~~~~h------------~~~v~~l~~ 516 (577)
T 2ymu_A 462 -------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL----LQTLTGH------------SSSVRGVAF 516 (577)
T ss_dssp -------EEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SCE----EEEEECC------------SSCEEEEEE
T ss_pred -------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CCE----EEEEeCC------------CCCEEEEEE
Confidence 356789999999999999 999999999999999964 333 4455554 488999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+|+|++|++++ |+.|++||.. ++++..+.+|...+ ++++|+||+++|++++.|+.|++||
T Consensus 517 s~dg~~l~s~~~dg~v~lwd~~--~~~~~~~~~h~~~v---------------~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 517 SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSV---------------WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEECcCEEEEEeCC--CCEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999976 6999999963 78899999998876 5999999999999999999999997
No 22
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-38 Score=288.40 Aligned_cols=293 Identities=13% Similarity=0.166 Sum_probs=239.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|++++||+|+.||.|++||+.+++ ....+.+|.
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 74 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------------------RLGTLDGHT---------- 74 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------------------hhhhhhhcC----------
Confidence 45799999999999999999999999999999988765 445678888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.+|++++.||.|++||+.+++....... ...+. +++|+|++..+
T Consensus 75 --~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~v~-------~~~~~~~~~~l---- 130 (369)
T 3zwl_B 75 --GTIWSIDVD--CFTKYCVTGSADYSIKLWDVSNGQCVATWKS---------PVPVK-------RVEFSPCGNYF---- 130 (369)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEEC---------SSCEE-------EEEECTTSSEE----
T ss_pred --CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEeec---------CCCeE-------EEEEccCCCEE----
Confidence 789999999 5678999999999999999999887766552 22344 78999999985
Q ss_pred cCCCCCccccccCC-----CcEEeeeeecccCccccce-----eeEeeeccccc--ceeeEEeCCCCCEEEEe-CCCeEE
Q 012535 191 GCASNDSSFPPGGV-----SSLRLPVVVTSQETNLVAG-----CRRIYAHAHDY--HINSISNNSDGETFISA-DDLRIN 257 (461)
Q Consensus 191 ~~~~~~~~~~~~~~-----~~i~i~~~~~~~~~~~~~~-----~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~ 257 (461)
++++.+ +.|++|| +.......... .... ...|.. .+.+++|+|++++|+++ .||.|+
T Consensus 131 --------~~~~~~~~~~~g~i~~~d-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 200 (369)
T 3zwl_B 131 --------LAILDNVMKNPGSINIYE-IERDSATHELTKVSEEPIHK-IITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200 (369)
T ss_dssp --------EEEECCBTTBCCEEEEEE-EEECTTTCCEEEECSSCSEE-EECCTTCCCEEEEEECGGGCEEEEEETTSEEE
T ss_pred --------EEecCCccCCCCEEEEEE-ecCCccceeecccccceeee-ccCCcCccceeEEEEcCCCCEEEEEcCCCEEE
Confidence 888877 9999999 54433211110 1111 134555 89999999999999999 899999
Q ss_pred EEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccc
Q 012535 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (461)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (461)
+||+++...... .+..|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+...
T Consensus 201 i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~--------- 259 (369)
T 3zwl_B 201 KYDVSNNYEYVD-------SIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQV----LKKYETD--------- 259 (369)
T ss_dssp EEETTTTTEEEE-------EEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEECS---------
T ss_pred EEECCCCcEeEE-------EEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCce----eeeecCC---------
Confidence 999986444433 355688999999999998 9999999999999999998765 3344322
Q ss_pred cccccceeEEEEccCCCEEEEec-CC--------------eEEEEEccCCCCCeeEEeeccCccccccccccCCCcccee
Q 012535 338 TEIIASISDIKFARNGRHILSRD-YM--------------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (461)
Q Consensus 338 ~~h~~~v~~l~~s~~g~~l~s~~-d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (461)
..+..++|+|+++++++++ ++ .+++||+.. ++++..+.+|...+ .
T Consensus 260 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v---------------~ 319 (369)
T 3zwl_B 260 ----CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPL---------------N 319 (369)
T ss_dssp ----SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCE---------------E
T ss_pred ----CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcE---------------E
Confidence 6799999999999999976 45 899999996 88899999988765 4
Q ss_pred eEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 403 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+++|+|++++|++++.||.|++|+++.+.
T Consensus 320 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 320 TVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99999999999999999999999998654
No 23
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.5e-39 Score=296.64 Aligned_cols=313 Identities=10% Similarity=0.114 Sum_probs=232.1
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.|.++|++++|+|++++||+|+.||.|++||+.+++ ++....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------------------~~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------------------WVQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------------------EEEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------------------EEeeeeecCCC------------
Confidence 488999999999999999999999999999988653 12445677888
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.+++|+ +++.+|++++.||.|++||+.+++.........+ ...+. +++|+|+++.+
T Consensus 53 ~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~l------ 111 (372)
T 1k8k_C 53 GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI------NRAAR-------CVRWAPNEKKF------ 111 (372)
T ss_dssp SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC------SSCEE-------EEEECTTSSEE------
T ss_pred CcccEEEEe--CCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC------CCcee-------EEEECCCCCEE------
Confidence 789999999 4678999999999999999988875555433222 23344 78999999885
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC-------
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS------- 264 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~------- 264 (461)
++++.++.|++|| +..... .........+|...|.+++|+|++++|+++ .|+.|++||++..
T Consensus 112 ------~~~~~d~~v~i~d-~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 112 ------AVGSGSRVISICY-FEQEND---WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp ------EEEETTSSEEEEE-EETTTT---EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred ------EEEeCCCEEEEEE-ecCCCc---ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence 9999999999999 543221 222233346788999999999999999999 8999999997521
Q ss_pred ----------CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 265 ----------NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 265 ----------~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
.... ..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+..+.
T Consensus 182 ~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~----- 244 (372)
T 1k8k_C 182 PTPWGSKMPFGELM-------FESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMA----VATLASET----- 244 (372)
T ss_dssp CBTTBSCCCTTCEE-------EECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTE----EEEEECSS-----
T ss_pred ccccccccchhhhe-------EecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCce----eEEEccCC-----
Confidence 1111 1355788999999999998 8999999999999999988765 45555443
Q ss_pred ccccccccceeEEEEccCCCEEEEecCCeEEEEEccCC-CC--CeeEEeeccCc----------------ccccc-----
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD-SG--PVATFQVHEHL----------------RPKLC----- 390 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~-~~--~~~~~~~~~~~----------------~~~~~----- 390 (461)
..|.+++|+|++++|++|.|+.|++|++... +. .+..+..+... .....
T Consensus 245 -------~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 245 -------LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp -------CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred -------CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 6899999999999999998899999999741 10 01000000000 00000
Q ss_pred -ccccCCCccceeeEEEe-cCC---CEEEEecCCCeEEEEecCCCCcc
Q 012535 391 -DLYENDSIFDKFECCLS-GDG---GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 391 -~~~~~~~~~~v~~~~~s-~~~---~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..........|.+++|. ++| .+|++|+.||.|++|++.+++..
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 00000111234699866 666 99999999999999999876443
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-38 Score=283.17 Aligned_cols=267 Identities=16% Similarity=0.220 Sum_probs=216.4
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
+....|.+|. +.|++++|+ +++.++++++.||+|++||+.++........+. ..+.
T Consensus 4 ~~~~~~~~h~------------~~V~~~~fs--p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~--------~~v~-- 59 (304)
T 2ynn_A 4 DIKKTFSNRS------------DRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE--------TPVR-- 59 (304)
T ss_dssp CCEEEEEEEC------------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------SCEE--
T ss_pred eeEEeecCCC------------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCceeEEeeccC--------CcEE--
Confidence 3456788888 889999999 567899999999999999999987766655442 2344
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
+++|+|+++.+ ++++.|+.|++|| +.. .++...+ .+|...|.+++|+|++++|++
T Consensus 60 -----~~~~~~~~~~l------------~s~s~d~~i~vwd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~~l~s 114 (304)
T 2ynn_A 60 -----AGKFIARKNWI------------IVGSDDFRIRVFN-YNT------GEKVVDF-EAHPDYIRSIAVHPTKPYVLS 114 (304)
T ss_dssp -----EEEEEGGGTEE------------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEECSSSSEEEE
T ss_pred -----EEEEeCCCCEE------------EEECCCCEEEEEE-CCC------CcEEEEE-eCCCCcEEEEEEcCCCCEEEE
Confidence 77999999985 9999999999999 432 2233343 789999999999999999999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
| .|++|++||+++...... .+.+|...|.+++|+|.+..+|++|+.|++|++||++.... ...+..
T Consensus 115 gs~D~~v~lWd~~~~~~~~~-------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~~-- 181 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNWALEQ-------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTT-- 181 (304)
T ss_dssp EETTSCEEEEEGGGTTEEEE-------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEEC--
T ss_pred ECCCCeEEEEECCCCcchhh-------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceecc--
Confidence 9 899999999986544433 36779999999999995448999999999999999987653 222221
Q ss_pred CCCccccccccccceeEEEEcc--CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 330 APGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~--~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
+|...+..+.|+| ++.+|++|+ |+.|++||+++ ++++..+.+|...+ ..++|
T Consensus 182 ---------~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~ 236 (304)
T 2ynn_A 182 ---------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVF 236 (304)
T ss_dssp ---------CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEE
T ss_pred ---------CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCCE---------------EEEEE
Confidence 2236789999987 778999976 69999999996 88899999998776 48999
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCc
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMS 445 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 445 (461)
+|++++|++|+.||.|++||+.+++.. ..+..+...+.
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~~~~~~~ 274 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNVGLERSW 274 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCCEE-EEECCSSSSEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcee-eeccCCCccEE
Confidence 999999999999999999999988765 56666655543
No 25
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-38 Score=282.91 Aligned_cols=258 Identities=13% Similarity=0.227 Sum_probs=199.4
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|+|++||+|+.|++|+|||+.+... +....+.+|.
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~---------- 53 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS----------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc----------
Confidence 347999999999999999999999999999999875321 2456788998
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+|..++.+|++++.|++|++||+++++.....
T Consensus 54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 93 (297)
T 2pm7_B 54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA-------------------------------------- 93 (297)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE--------------------------------------
T ss_pred --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE--------------------------------------
Confidence 8899999986445789999999999999998765311100
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCc
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
. +.+|...|.+++|+|+ +.+|+++ .|+.|++||++.....
T Consensus 94 ------------------------------------~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 94 ------------------------------------V-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp ------------------------------------E-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred ------------------------------------E-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 0 2567789999999998 8899998 8999999999865322
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCC------------CCeEEEEecCCeEEEEECCCcccccccccccccccCCCccc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (461)
.. ..+.+|...|.+++|+|++ .++|++|+.|++|++||++++.........+
T Consensus 137 ~~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l---------- 200 (297)
T 2pm7_B 137 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL---------- 200 (297)
T ss_dssp CC------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE----------
T ss_pred ee------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe----------
Confidence 11 1356789999999999972 2699999999999999998754211112333
Q ss_pred cccccccceeEEEEccCC---CEEEEec-CCeEEEEEccCCCCCe--eEE--eeccCccccccccccCCCccceeeEEEe
Q 012535 336 FFTEIIASISDIKFARNG---RHILSRD-YMTLKLWDINMDSGPV--ATF--QVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 336 ~~~~h~~~v~~l~~s~~g---~~l~s~~-d~~i~vwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
.+|...|.+++|+|++ .+|++++ |++|+|||++...... ..+ ..|... |++++|+
T Consensus 201 --~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s 263 (297)
T 2pm7_B 201 --EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWS 263 (297)
T ss_dssp --CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEEC
T ss_pred --cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc---------------EEEEEEC
Confidence 3455899999999984 8899876 6999999997522111 122 223322 3699999
Q ss_pred cCCCEEEEecCCCeEEEEecCC
Q 012535 408 GDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
|++++|++++.||.|+||+...
T Consensus 264 ~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999874
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-38 Score=292.57 Aligned_cols=302 Identities=12% Similarity=0.086 Sum_probs=224.6
Q ss_pred ccccccceEEEEEcCCC-CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~--------- 118 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG--------- 118 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT---------
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC---------
Confidence 34689999999999999 99999999999999999876532 222234677
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+| .++.+|++++.|+.|++||+.+............ ...+. +++|+|+++.+
T Consensus 119 ---~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~l--- 178 (383)
T 3ei3_B 119 ---DAITGMKFNQ-FNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW------DYWYC-------CVDVSVSRQML--- 178 (383)
T ss_dssp ---CBEEEEEEET-TEEEEEEEEETTTEEEEEETTSCEEEEEECCCCS------SCCEE-------EEEEETTTTEE---
T ss_pred ---CceeEEEeCC-CCCCEEEEEeCCCEEEEEECCCCceEEEeccCCC------CCCeE-------EEEECCCCCEE---
Confidence 7899999995 1467999999999999999997544333322211 23344 78999999985
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++++.|+.|++|| +. ......+ .+|...|.+++|+|+++ +|+++ .|+.|++||+++.+..
T Consensus 179 ---------~~~~~d~~i~i~d-~~-------~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 179 ---------ATGDSTGRLLLLG-LD-------GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp ---------EEEETTSEEEEEE-TT-------SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred ---------EEECCCCCEEEEE-CC-------CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 9999999999999 42 2233333 78999999999999998 88888 8999999999974322
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeC-CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCc-----cccccccc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-----RSFFTEII 341 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~ 341 (461)
.... ...+|...|.+++|+| ++ .+|++++.|+.|++||++++.. ...+..+..... ........
T Consensus 241 ~~~~-----~~~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 241 NSYI-----AEMPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSK----PDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp TCEE-----EEEECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTS----CSEEEECCBCCCTTSCCCCCEECSS
T ss_pred cceE-----EEecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcc----ccccccccccccccccceEEeccCC
Confidence 1111 1225889999999999 88 9999999999999999998765 333333221000 00000011
Q ss_pred cceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeecc--CccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHE--HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
..+..++|+|+|++ +| .|+.|++||+.+ ++++..+.+|. ..+ ..++|+|++++|++|+
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s- 371 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM- 371 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-
Confidence 34555777777777 54 469999999996 88888888743 332 2669999999999997
Q ss_pred CCeEEEEecCC
Q 012535 419 SNLFRVFGCSE 429 (461)
Q Consensus 419 dg~i~iw~~~~ 429 (461)
||.|++||+++
T Consensus 372 d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 GFNILIWNRED 382 (383)
T ss_dssp TTEEEEEECC-
T ss_pred CCcEEEEecCC
Confidence 99999999874
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.4e-38 Score=306.66 Aligned_cols=299 Identities=17% Similarity=0.307 Sum_probs=243.3
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|...|++++|+|++++|++++.|+.|++|+.... ....+.+|.
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~h~---------- 303 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS---------- 303 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------------------------EEEEECCCS----------
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------------------EEEEEecCC----------
Confidence 4468999999999999999999999999999996432 345677888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.++++++.|++|++||......... ..+ ...+. +++|+|+++.+
T Consensus 304 --~~v~~~~~~--~~~~~l~t~~~d~~i~~w~~~~~~~~~~-~~~--------~~~v~-------~~~~s~~g~~l---- 359 (577)
T 2ymu_A 304 --SSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQHLQTL-TGH--------SSSVW-------GVAFSPDGQTI---- 359 (577)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCEEEEE-CCC--------SSCEE-------EEEECTTSSEE----
T ss_pred --CCeEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCeeEEE-eCC--------CCCEE-------EEEECCCCCEE----
Confidence 779999999 5678999999999999999876654332 221 22344 78999999985
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++++.++.+++|+ . . ......+ .+|...|.+++|+|++++|+++ .|+.|++||.. .+ ...
T Consensus 360 --------~~~~~dg~v~~~~-~---~----~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~-~~~ 420 (577)
T 2ymu_A 360 --------ASASDDKTVKLWN-R---N----GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQ 420 (577)
T ss_dssp --------EEEETTSEEEEEE-T---T----CCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CC-EEE
T ss_pred --------EEEeCCCEEEEEc-C---C----CCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-EEE
Confidence 9999999999999 2 1 2233333 7899999999999999999999 89999999964 32 222
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+.+|...|++++|+|++ ++|++++.|+.|++||..... +..+..| ...|.+++|
T Consensus 421 -------~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~~-----~~~~~~~------------~~~v~~~~~ 475 (577)
T 2ymu_A 421 -------TLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQL-----LQTLTGH------------SSSVRGVAF 475 (577)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCE-----EEEEECC------------SSCEEEEEE
T ss_pred -------EecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCCCE-----EEEEcCC------------CCCEEEEEE
Confidence 356789999999999998 999999999999999975432 3444444 478999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+|++++|++++ |+.|++||.. ++++..+.+|...+ .+++|+||+++|++++.||.|+|||..
T Consensus 476 spd~~~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 476 SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp CTTSCEEEEEETTSEEEEEETT--SCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred cCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCE---------------EEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 99999999976 6999999964 78899999998765 499999999999999999999999964
Q ss_pred CCCccceeeccCCCCCcccccc
Q 012535 429 EGSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
++.. ..+.+|..++......
T Consensus 539 -~~~~-~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 539 -GQLL-QTLTGHSSSVWGVAFS 558 (577)
T ss_dssp -SCEE-EEEECCSSCEEEEEEC
T ss_pred -CCEE-EEEcCCCCCEEEEEEc
Confidence 5444 6788888887665544
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.5e-38 Score=291.52 Aligned_cols=331 Identities=10% Similarity=0.081 Sum_probs=232.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|++++|+| ++|++|+.||.|+||++.+++.. ........+.+|.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~---------- 62 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK---------- 62 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT----------
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC----------
Confidence 347999999999998 79999999999999999876521 1223455677888
Q ss_pred cccceEEEEEeec--CCC---cEEEEEeCCCeEEEEEccCCce-----eEEeeeecCCCccCCCCCccccccccCcceee
Q 012535 111 IEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKV-----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (461)
Q Consensus 111 ~~~~v~~v~~~p~--~~~---~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (461)
..|.+++|+|. .++ .+|++++.|+.|++|++.+++. ......+... ...+.+. +++|+
T Consensus 63 --~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~-------~~~~~ 130 (397)
T 1sq9_A 63 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---MKKHSFW-------ALKWG 130 (397)
T ss_dssp --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---GGGSCEE-------EEEEE
T ss_pred --CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---cCCCcEE-------EEEEe
Confidence 78999999963 126 7999999999999999988764 3333322100 0013344 78999
Q ss_pred ----cCCCc-ccccccCCCCCccccccCCCcEEeeeeecc------cCccccceeeEeee------cccccceeeEEeCC
Q 012535 181 ----ANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVVTS------QETNLVAGCRRIYA------HAHDYHINSISNNS 243 (461)
Q Consensus 181 ----~~g~~-~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------~~~~~~~~~~~~~~------~~~~~~v~~i~~~~ 243 (461)
|++.. + ++++.++.|++|| +.. ..... ......+. ..|...|.+++|+|
T Consensus 131 ~~~~~~~~~~l------------~~~~~dg~i~iwd-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 131 ASNDRLLSHRL------------VATDVKGTTYIWK-FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp CCC----CEEE------------EEEETTSCEEEEE-EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred eccCCCCceEE------------EEEeCCCcEEEEe-CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC
Confidence 89987 6 9999999999999 554 22111 00110211 45788999999999
Q ss_pred CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCC---C---CcceEEEEEeCCCCCeEEEEecC---CeEEEEECC
Q 012535 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMR 313 (461)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~ 313 (461)
++ .|+++ .|+.|++||+++.+... .+.. | ...|.+++|+|++ .+|++++.| +.|++||++
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTTTEEEE--------EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETT
T ss_pred Cc-eEEEEeCCCcEEEEECCCCceeE--------EEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECC
Confidence 99 99998 89999999998654333 2344 7 8899999999998 999999999 999999999
Q ss_pred CcccccccccccccccCCC-ccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEe------eccCc
Q 012535 314 QSALCDTHSKLFEEQEAPG-TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ------VHEHL 385 (461)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~------~~~~~ 385 (461)
+++. +..+.....+. .......|...|.+++|+|++++|++++ |+.|++||+.+ ++++..+. .|...
T Consensus 267 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 267 FGER----IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEED 341 (397)
T ss_dssp TCCE----EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGG
T ss_pred CCcc----cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhh
Confidence 8765 34444310000 0000011458899999999999999976 69999999996 78888888 55100
Q ss_pred cccccccccCCCccceeeEEEecCC----------CEEEEecCCCeEEEEecCCCC
Q 012535 386 RPKLCDLYENDSIFDKFECCLSGDG----------GRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~~ 431 (461)
...-...........|.+++|+|++ ++|++|+.||.|++|++.+|+
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 0000000000001124699999998 799999999999999998763
No 29
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.6e-38 Score=286.20 Aligned_cols=305 Identities=12% Similarity=0.102 Sum_probs=216.4
Q ss_pred ccceEEEEEcCCCCEEEEeecCC-------cEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGG-------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (461)
.-+|+|++|+|||++||+|+.+. .|++|++....... ...+ .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~--~~~~-----------~~~~~~~l~~~~------- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE--KEQF-----------HILSEFALEDND------- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH--HHHE-----------EEEEEEECCTTS-------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcce--eeee-----------eeeeEEEccCCC-------
Confidence 45899999999999999997543 59999997654320 0000 000112356676
Q ss_pred ccccccceEEEEEeecCCCcEEEEEe-----------CCCeEEEEEccCCcee--EEeeeecCCCccCCCCCcccccccc
Q 012535 108 SLEIEEKINKIRWCQSANSALYLLST-----------NDKTIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~-----------~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (461)
..|.++++. +..+++|. .|+++++|++...... .......... ......+.
T Consensus 74 -----~~v~s~~~~----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 137 (365)
T 4h5i_A 74 -----DSPTAIDAS----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAS-TNADDYTK------ 137 (365)
T ss_dssp -----CCCCEEEEE----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCC-CCTTCCEE------
T ss_pred -----CceEEEEeC----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeec-CCcccCEE------
Confidence 678888876 33666653 5788999998754322 1111111110 00011122
Q ss_pred CcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCC
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~ 254 (461)
.++|+|||+.+. +++++.|+.|++|| +.. ..+...+ .|...|.+++|+|++++++++.++
T Consensus 138 -~v~fSpDg~~la----------~as~~~d~~i~iwd-~~~------~~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 138 -LVYISREGTVAA----------IASSKVPAIMRIID-PSD------LTEKFEI--ETRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp -EEEECTTSSCEE----------EEESCSSCEEEEEE-TTT------TEEEEEE--ECSSCCCEEEECTTSSEEEEECSS
T ss_pred -EEEEcCCCCEEE----------EEECCCCCEEEEeE-CCC------CcEEEEe--CCCCceEEEEEccCCceEEeccce
Confidence 679999999851 14566899999999 422 2233332 477889999999999999999666
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC----eEEEEECCCcccccccccccccccC
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
.+++|+..+++..... ....|...|.+++|+|++ ..+++++.|+ .+++||+............
T Consensus 198 ~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~------ 264 (365)
T 4h5i_A 198 SLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ------ 264 (365)
T ss_dssp CEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE------
T ss_pred eEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeee------
Confidence 6777777755544332 355688999999999999 8999999887 6888998765432111222
Q ss_pred CCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEE-eeccCccccccccccCCCccceeeEEEec
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
+.+|...|++++|+|||++||+|+ |++|+|||+++ ++++..+ .+|...+ ++++|+|
T Consensus 265 ------~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fSp 322 (365)
T 4h5i_A 265 ------VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTISP 322 (365)
T ss_dssp ------EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEECT
T ss_pred ------ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEECC
Confidence 334457899999999999999986 69999999996 7888775 6888776 5999999
Q ss_pred CCCEEEEecCCCeEEEEecCCC
Q 012535 409 DGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
||++||+||.|++|+||++..+
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999754
No 30
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=281.04 Aligned_cols=270 Identities=14% Similarity=0.226 Sum_probs=216.7
Q ss_pred cccccCCCcchhhccccccccceEEEEEeec--CCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~--~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
...+.+|. +.|.+++|+|. .++.+|++|+.|++|++|++..++.........+ ...+.
T Consensus 25 ~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh------~~~v~-- 84 (321)
T 3ow8_A 25 FKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH------QLGVV-- 84 (321)
T ss_dssp EEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCC------SSCEE--
T ss_pred eeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccC------CCCEE--
Confidence 34567888 88999999964 3467999999999999999987765443333322 23344
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
++++++++..+ ++++.|+.|++|| +.. .++...+ ..|...+.+++|+|++++|++
T Consensus 85 -----~~~~~~~~~~l------------~s~s~D~~i~lWd-~~~------~~~~~~~-~~~~~~~~~~~~spdg~~l~~ 139 (321)
T 3ow8_A 85 -----SVDISHTLPIA------------ASSSLDAHIRLWD-LEN------GKQIKSI-DAGPVDAWTLAFSPDSQYLAT 139 (321)
T ss_dssp -----EEEECSSSSEE------------EEEETTSEEEEEE-TTT------TEEEEEE-ECCTTCCCCEEECTTSSEEEE
T ss_pred -----EEEECCCCCEE------------EEEeCCCcEEEEE-CCC------CCEEEEE-eCCCccEEEEEECCCCCEEEE
Confidence 77899998875 9999999999999 432 2333333 677788999999999999999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
+ .|+.|++|++++.+... .+..+...+.+++|+|++ ++|++|+.||.|++||+++++. +..+..|.
T Consensus 140 g~~dg~v~i~~~~~~~~~~--------~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~----~~~~~~h~ 206 (321)
T 3ow8_A 140 GTHVGKVNIFGVESGKKEY--------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKL----LHTLEGHA 206 (321)
T ss_dssp ECTTSEEEEEETTTCSEEE--------EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCCS
T ss_pred EcCCCcEEEEEcCCCceeE--------EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEcccC
Confidence 9 89999999998765543 345578889999999999 9999999999999999998865 45555544
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
.+|.+++|+|++++|++|+ |+.|++||++. ++.+..+.+|...+ .+++|+|
T Consensus 207 ------------~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp 258 (321)
T 3ow8_A 207 ------------MPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCP 258 (321)
T ss_dssp ------------SCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECT
T ss_pred ------------CceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCce---------------EEEEECC
Confidence 7899999999999999987 59999999996 78888899998765 4999999
Q ss_pred CCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCccccc
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 449 (461)
++++|++|+.||.|++||+.+++.. ..+..|..++.....
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCV-HTFFDHQDQVWGVKY 298 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEE-EEEcCCCCcEEEEEE
Confidence 9999999999999999999988665 567777776655443
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.1e-37 Score=277.13 Aligned_cols=286 Identities=14% Similarity=0.240 Sum_probs=225.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccc--cCCCcchhhccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~ 108 (461)
...|.+.|++++|+|++++|++++ ||.|++|++.+++.. .....+ .+|.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~--------------------~~~~~~~~~~~~-------- 97 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--------------------SPVSQLDCLNRD-------- 97 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--------------------SCSEEEECSCTT--------
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce--------------------eeeecccccCCC--------
Confidence 457999999999999999999999 999999999876532 111122 2566
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|.+++|+ +++.++++++.|+.|++||+.+++.........+ ...+. +++|+|+++.+
T Consensus 98 ----~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~~i~-------~~~~~~~~~~l-- 156 (337)
T 1gxr_A 98 ----NYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS------APACY-------ALAISPDSKVC-- 156 (337)
T ss_dssp ----SBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEECS------SSCEE-------EEEECTTSSEE--
T ss_pred ----CcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeecccC------CCceE-------EEEECCCCCEE--
Confidence 779999999 5678999999999999999998774333333222 22333 78999999885
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++++.++.|++|| +.. .+....+ ..|...|.+++|+|+++.|+++ .|+.|++||+++.+..
T Consensus 157 ----------~~~~~dg~v~~~d-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 157 ----------FSCCSDGNIAVWD-LHN------QTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218 (337)
T ss_dssp ----------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ----------EEEeCCCcEEEEe-CCC------Cceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence 9999999999999 432 2333333 6789999999999999999999 8999999999865543
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
.. ..+...+.+++|+|++ .+|++++.|+.|++||+++++. ..+.. |...|.++
T Consensus 219 ~~---------~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-----~~~~~------------~~~~v~~~ 271 (337)
T 1gxr_A 219 QQ---------HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQLHL------------HESCVLSL 271 (337)
T ss_dssp EE---------EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEECC------------CSSCEEEE
T ss_pred ee---------ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-----EEEcC------------CccceeEE
Confidence 32 1367789999999999 9999999999999999988753 23333 34789999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+|+|++++|++++ |+.|++||+.+ ++.+... .|...+ .+++|+|++++|++++.||.|++|+
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~-~~~~~~~-~~~~~v---------------~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQS-KESSSV---------------LSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECSSCE---------------EEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEECCC-CeEEEEe-cCCCcE---------------EEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999976 69999999986 6655333 344443 4899999999999999999999999
Q ss_pred cC
Q 012535 427 CS 428 (461)
Q Consensus 427 ~~ 428 (461)
+.
T Consensus 335 ~~ 336 (337)
T 1gxr_A 335 VI 336 (337)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-37 Score=290.52 Aligned_cols=269 Identities=17% Similarity=0.262 Sum_probs=223.5
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (461)
....+.+|. .+|++++|+| ++.++++|+.||+|++||+.+++....+..+ .+.|.
T Consensus 100 ~~~~l~gh~------------~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h--------~~~V~--- 154 (410)
T 1vyh_C 100 EKYALSGHR------------SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGH--------TDSVQ--- 154 (410)
T ss_dssp CSCEEECCS------------SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCC--------SSCEE---
T ss_pred ceEeecccC------------CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEEecc--------CCcEE---
Confidence 345677888 8899999994 5779999999999999999998877666554 23455
Q ss_pred cccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe
Q 012535 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (461)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (461)
+++|+|+++.+ ++|+.|+.|++|| +.. ..+.+.+ .+|...|.+++|+|++++|++|
T Consensus 155 ----~v~~~~~~~~l------------~sgs~D~~i~iwd-~~~------~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 155 ----DISFDHSGKLL------------ASCSADMTIKLWD-FQG------FECIRTM-HGHDHNVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp ----EEEECTTSSEE------------EEEETTSCCCEEE-TTS------SCEEECC-CCCSSCEEEEEECSSSSEEEEE
T ss_pred ----EEEEcCCCCEE------------EEEeCCCeEEEEe-CCC------CceeEEE-cCCCCCEEEEEEeCCCCEEEEE
Confidence 78999999985 9999999999999 432 2334443 7899999999999999999999
Q ss_pred -CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccC
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
.|+.|++||++++.... .+.+|...|.++.|+|++ .+|++|+.|+.|++||++++.. ...+..|
T Consensus 211 s~D~~i~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~----~~~~~~h-- 275 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVK--------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKEC----KAELREH-- 275 (410)
T ss_dssp ETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEEECCC--
T ss_pred eCCCeEEEEECCCCcEEE--------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCce----eeEecCC--
Confidence 89999999998655332 456799999999999999 9999999999999999988764 3444444
Q ss_pred CCccccccccccceeEEEEccC--------------------CCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccc
Q 012535 331 PGTRSFFTEIIASISDIKFARN--------------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~--------------------g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 389 (461)
...|.+++|+|+ |.+|++|+ |+.|++||+++ +.++..+.+|...+
T Consensus 276 ----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v--- 341 (410)
T 1vyh_C 276 ----------RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV--- 341 (410)
T ss_dssp ----------SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---
T ss_pred ----------CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---
Confidence 478999999996 67899876 69999999996 88899999998776
Q ss_pred cccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCccccccc
Q 012535 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (461)
.+++|+|++++|++|+.||.|++||+.+++.. ..+.+|...+.....++
T Consensus 342 ------------~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~-~~~~~h~~~v~~l~~~~ 390 (410)
T 1vyh_C 342 ------------RGVLFHSGGKFILSCADDKTLRVWDYKNKRCM-KTLNAHEHFVTSLDFHK 390 (410)
T ss_dssp ------------EEEEECSSSSCEEEEETTTEEEEECCTTSCCC-EEEECCSSCEEEEEECS
T ss_pred ------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCceE-EEEcCCCCcEEEEEEcC
Confidence 49999999999999999999999999988766 67788887766555443
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5e-38 Score=282.32 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=197.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC----------
Confidence 347999999999999999999999999999999876531 1345688998
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+|..++.+|++++.|++|++||+++++.....
T Consensus 58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 97 (316)
T 3bg1_A 58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------------------------------------- 97 (316)
T ss_dssp --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence 8899999985435779999999999999998765321110
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCc
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
. +.+|...|.+++|+|+ +.+|++| .|+.|++||++.....
T Consensus 98 ------------------------------------~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 98 ------------------------------------E-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp ------------------------------------E-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred ------------------------------------E-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 0 2578889999999998 7899999 8999999999855322
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCC----------------CCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
... ..+.+|...+.+++|+|+. ..+|++|+.|+.|++||++..... ..+..+.
T Consensus 141 ~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~l~----- 209 (316)
T 3bg1_A 141 EVK-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQKLE----- 209 (316)
T ss_dssp EEC-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEECCB-----
T ss_pred cee-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeeecc-----
Confidence 111 1456788999999999972 168999999999999999754210 0123333
Q ss_pred CccccccccccceeEEEEccCC----CEEEEec-CCeEEEEEccCCC---CCeeEEeeccCccccccccccCCCccceee
Q 012535 332 GTRSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g----~~l~s~~-d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (461)
+|...|.+++|+|++ ++|++|+ |++|++||+.... .....+..|...+ ++
T Consensus 210 -------~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~ 267 (316)
T 3bg1_A 210 -------AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WH 267 (316)
T ss_dssp -------CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EE
T ss_pred -------cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EE
Confidence 455889999999986 7899876 6999999997411 1234455665544 59
Q ss_pred EEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 404 CCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
++|+|++++|++++.||.|+||+....
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 999999999999999999999998643
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-38 Score=291.82 Aligned_cols=257 Identities=11% Similarity=0.091 Sum_probs=188.5
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
+.++|++++|+|+|++||+|+.||.|+|||+.++. .+....+.+|. .
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---------------------~~~~~~~~~h~------------~ 56 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---------------------WKHARTFSDHD------------K 56 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---------------------EEECCCBCCCS------------S
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---------------------eEEEEEEecCC------------c
Confidence 56789999999999999999999999999998652 12455678888 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc-eeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.|.+++|+ +++.+|++++.|++|++||+.+++ .........+ .+.+. +++|+|+++.+
T Consensus 57 ~v~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~l------ 115 (377)
T 3dwl_C 57 IVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL------NRAAT-------FVRWSPNEDKF------ 115 (377)
T ss_dssp CEEEEEEC--TTTCCEEEEETTSSEEEC------CCCCEEECCCC------SSCEE-------EEECCTTSSCC------
T ss_pred eEEEEEEe--CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc------CCceE-------EEEECCCCCEE------
Confidence 89999999 557899999999999999999876 2222222111 23344 78999999885
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecc-cccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee-
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN- 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~- 269 (461)
++++.|+.|++|| +.... .....+.+ .+ |...|.+++|+|++++|+++ .|+.|++||++.......
T Consensus 116 ------~~~~~d~~i~iwd-~~~~~---~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 116 ------AVGSGARVISVCY-FEQEN---DWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp ------EEEESSSCEEECC-C--------CCCCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred ------EEEecCCeEEEEE-ECCcc---cceeeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 9999999999999 43322 11123333 44 99999999999999999999 899999999863321100
Q ss_pred ----------eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccc
Q 012535 270 ----------IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 270 ----------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
.-. ....+ +|...|.+++|+|++ ++|++++.||.|++||++++......+..+..
T Consensus 185 ~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------ 249 (377)
T 3dwl_C 185 EASVWGSRLPFNT-VCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKL------------ 249 (377)
T ss_dssp CSCSSCSCCCEEE-EEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEEC------------
T ss_pred cccccccccchhh-hhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecC------------
Confidence 000 00134 789999999999999 89999999999999999987642111333444
Q ss_pred cccceeEEEEccCCCEEEEecCCeEEEEEcc
Q 012535 340 IIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~ 370 (461)
|...|.+++|+|+|++|++|+++.+.+|+..
T Consensus 250 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 250 SQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp SSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 4478999999999999999988666688776
No 35
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.7e-37 Score=285.42 Aligned_cols=286 Identities=16% Similarity=0.251 Sum_probs=225.7
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence 4678999975 4888876 899999999887632 222345666 7799
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCC
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (461)
+|+|+ ++|.+|++|+.||+|++||+.+++.......+.. .+. +++.++..+
T Consensus 152 sv~fs--pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~--------~v~---------~~s~~~~~l---------- 202 (420)
T 4gga_A 152 SVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA--------RVG---------SLSWNSYIL---------- 202 (420)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE---------EEEEETTEE----------
T ss_pred EEEEC--CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC--------ceE---------EEeeCCCEE----------
Confidence 99999 5788999999999999999999987766654422 222 455566664
Q ss_pred ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
++++.|+.+++|| ..... ..... +.+|...+..+.++|+++.++++ .|+.+++|+....+......
T Consensus 203 --~sgs~d~~i~~~d-~~~~~-----~~~~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~---- 269 (420)
T 4gga_A 203 --SSGSRSGHIHHHD-VRVAE-----HHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---- 269 (420)
T ss_dssp --EEEETTSEEEEEE-TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----
T ss_pred --EEEeCCCceeEee-ecccc-----eeeEE-ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee----
Confidence 9999999999999 33221 12222 37899999999999999999999 89999999998655432111
Q ss_pred CCCCCCCcceEEEEEeCCCCCeEEEE--ecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 276 ANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
.....|...|.+++|+|.+..+++++ +.|++|++||++++.. ...+..+ ..+.++.|+|++
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~~~-------------~~v~~~~~~~~~ 332 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAH-------------SQVCSILWSPHY 332 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE----EEEEECS-------------SCEEEEEEETTT
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc----ceeeccc-------------cceeeeeecCCC
Confidence 13456889999999999886777764 4799999999999875 3444443 568999999999
Q ss_pred CEEEEec---CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 354 RHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 354 ~~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+.+++++ |+.|+|||+.+ ++++..+.+|...+ ++++|+|||++|+||+.||.|+|||+...
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9988742 59999999996 89999999998876 59999999999999999999999999865
Q ss_pred Cc
Q 012535 431 SA 432 (461)
Q Consensus 431 ~~ 432 (461)
..
T Consensus 397 ~~ 398 (420)
T 4gga_A 397 DP 398 (420)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=290.80 Aligned_cols=327 Identities=9% Similarity=0.073 Sum_probs=234.1
Q ss_pred CceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccc
Q 012535 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (461)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
...|++...-. ........|...|++++|+|++++|++|+.||.|++|++.+... ..+..
T Consensus 47 v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~~~~ 106 (416)
T 2pm9_A 47 LELWSLLAADS-EKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AINSM 106 (416)
T ss_dssp CEEEESSSGGG-CSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CCCEE
T ss_pred EEEEEccCCCC-CcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cccch
Confidence 45688764211 11223457899999999999999999999999999999976321 01245
Q ss_pred ccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc------eeEEeeeecCCCccCCCCCc
Q 012535 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGPI 167 (461)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~v 167 (461)
..+.+|. ..|++++|+|. ++.+|++++.|+.|++||+.+++ ....... .....+.+
T Consensus 107 ~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~v 168 (416)
T 2pm9_A 107 ARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ-----SMSSVDEV 168 (416)
T ss_dssp EECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-----SCCSSCCC
T ss_pred hhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCcccccccccccccc-----ccCCCCCe
Confidence 5677888 78999999953 26799999999999999998775 2111100 00112334
Q ss_pred cccccccCcceeecC-CCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccc------ccceeeEE
Q 012535 168 FGSHVSAIPKSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH------DYHINSIS 240 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~i~ 240 (461)
. +++|+|+ +.. +++++.|+.|++|| +... .....+ ..+ ...|.+++
T Consensus 169 ~-------~~~~~~~~~~~------------l~~~~~dg~v~iwd-~~~~------~~~~~~-~~~~~~~~~~~~v~~~~ 221 (416)
T 2pm9_A 169 I-------SLAWNQSLAHV------------FASAGSSNFASIWD-LKAK------KEVIHL-SYTSPNSGIKQQLSVVE 221 (416)
T ss_dssp C-------EEEECSSCTTE------------EEEESSSSCEEEEE-TTTT------EEEEEE-CCCCCSSCCCCCEEEEE
T ss_pred e-------EEEeCCCCCcE------------EEEEcCCCCEEEEE-CCCC------CcceEE-eccccccccCCceEEEE
Confidence 4 7899998 455 48999999999999 4332 222222 333 78899999
Q ss_pred eCCCC-CEEEEe-CCC---eEEEEEccCCCCceeeeccCCCCCC-CCCcceEEEEEeC-CCCCeEEEEecCCeEEEEECC
Q 012535 241 NNSDG-ETFISA-DDL---RINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMR 313 (461)
Q Consensus 241 ~~~~~-~~l~~~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~iwd~~ 313 (461)
|+|++ .+++++ .|+ .|++||+++...... .+. +|...|.+++|+| ++ .+|++++.||.|++||++
T Consensus 222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 222 WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ-------TLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB-------CCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSS
T ss_pred ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE-------EeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCC
Confidence 99997 678888 787 999999997644432 355 7899999999999 76 999999999999999999
Q ss_pred CcccccccccccccccCCCccccccccccceeEEEEccCC-CEEEEec-CCeEEEEEccCCCCCeeEEee----------
Q 012535 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQV---------- 381 (461)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~---------- 381 (461)
+++. +..+..|. ..|.+++|+|++ .+|++++ |+.|++||+.. .........
T Consensus 294 ~~~~----~~~~~~~~------------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~ 356 (416)
T 2pm9_A 294 SAEQ----LSQFPARG------------NWCFKTKFAPEAPDLFACASFDNKIEVQTLQN-LTNTLDEQETETKQQESET 356 (416)
T ss_dssp SCCE----EEEEECSS------------SCCCCEEECTTCTTEEEECCSSSEEEEEESCC-CCCSSCC------------
T ss_pred CCcc----ceeecCCC------------CceEEEEECCCCCCEEEEEecCCcEEEEEccC-CCCCcccccccccccCCcc
Confidence 8765 45555444 789999999999 8999876 69999999986 332221111
Q ss_pred ----------ccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 382 ----------HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 382 ----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
|...+..............+..++|+|+|++|++++.||.|+||++.++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 357 DFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 1111110000000001123458999999999999999999999999864
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.4e-37 Score=277.41 Aligned_cols=249 Identities=12% Similarity=0.119 Sum_probs=194.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|...|.+++|+|++ .|++|+.||+|+|||+.+++.. ......+.+|.
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-------------------~~~~~~~~~H~---------- 127 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-------------------IVSKFCKYEHD---------- 127 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-------------------EEEEEEEECCS----------
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-------------------eEeeccccCCC----------
Confidence 34567789999999986 7889999999999999887642 11122355788
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|++++|+ +++++|++|+.|++|++||+.+++....+..| .+.|. +++|++++..+
T Consensus 128 --~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h--------~~~V~-------~~~~~~~~~~~---- 184 (344)
T 4gqb_B 128 --DIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH--------AAQVT-------CVAASPHKDSV---- 184 (344)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEECSSCTTE----
T ss_pred --CCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc--------CCceE-------EEEecCCCCCc----
Confidence 889999999 56889999999999999999999887766654 33455 78999998753
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEee-ecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEccCCCCc
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++++.|+.|++|| +...+. ...+ ...|...+.+++|+|+ +++|++| .|+.|++||+++.+..
T Consensus 185 -------l~s~s~D~~v~iwd-~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~ 250 (344)
T 4gqb_B 185 -------FLSCSEDNRILLWD-TRCPKP------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV 250 (344)
T ss_dssp -------EEEEETTSCEEEEE-TTSSSC------EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred -------eeeecccccccccc-ccccce------eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence 58999999999999 543222 1111 1455667899999996 5678888 8999999999976554
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
. .+.+|...|++++|+|++.++|++|+.|++|+|||+++++. ..+.+ |.+.|+++
T Consensus 251 ~--------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~------------H~~~V~~v 305 (344)
T 4gqb_B 251 L--------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQA------------HRDFVRDA 305 (344)
T ss_dssp E--------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEECC------------CSSCEEEE
T ss_pred E--------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcC------------CCCCEEEE
Confidence 3 46779999999999999857899999999999999988763 23333 44889999
Q ss_pred EEccCCC-EEEEec-CCeEEEEEccC
Q 012535 348 KFARNGR-HILSRD-YMTLKLWDINM 371 (461)
Q Consensus 348 ~~s~~g~-~l~s~~-d~~i~vwd~~~ 371 (461)
+|+|+++ +|++++ |++|++|++.+
T Consensus 306 ~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999986 456665 79999999975
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=285.22 Aligned_cols=294 Identities=16% Similarity=0.237 Sum_probs=227.2
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
|.+.|++++|+|++++|++|+.||.|++||.. ++ ....+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~-----------------------~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GA-----------------------LLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-----------------------EEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC-----------------------eeeeccCCC------------c
Confidence 67899999999999999999999999999932 22 445677887 7
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.|.+++|+ +++.+|++++.|+.|++||+.+++.......+....................++.|++++..
T Consensus 151 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 220 (425)
T 1r5m_A 151 PIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF-------- 220 (425)
T ss_dssp CEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE--------
T ss_pred cEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE--------
Confidence 79999999 56789999999999999999988776665543321100000000000000126788887664
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
++++.++.|++|| +... ..... +..|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 221 -----~~~~~~g~i~~~d-~~~~------~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---- 283 (425)
T 1r5m_A 221 -----VIPGPKGAIFVYQ-ITEK------TPTGK-LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN---- 283 (425)
T ss_dssp -----EEECGGGCEEEEE-TTCS------SCSEE-ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE----
T ss_pred -----EEEcCCCeEEEEE-cCCC------ceeee-eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce----
Confidence 8999999999999 4332 12222 26888999999999999999999 89999999998665443
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
.+.+|...|.+++|+|++ ++++++.|+.|++||+++++. +..+..+. ..|.+++|+|+
T Consensus 284 ----~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~------------~~i~~~~~s~~ 341 (425)
T 1r5m_A 284 ----CFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL----LALSIVDG------------VPIFAGRISQD 341 (425)
T ss_dssp ----EECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE----EEEEECTT------------CCEEEEEECTT
T ss_pred ----EecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE----eEecccCC------------ccEEEEEEcCC
Confidence 355688999999999987 899999999999999988765 34444443 78999999999
Q ss_pred CCEEEEec-CCeEEEEEccCCCC--------------------CeeEEeeccC--ccccccccccCCCccceeeEEEecC
Q 012535 353 GRHILSRD-YMTLKLWDINMDSG--------------------PVATFQVHEH--LRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 353 g~~l~s~~-d~~i~vwd~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
+++|++++ |+.|++||+.. .+ ++..+..|.. . |.+++|+|+
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~ 405 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY---------------IFDLSWNCA 405 (425)
T ss_dssp SSEEEEEETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCC---------------EEEEEECTT
T ss_pred CCEEEEEECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCc---------------eEEEEccCC
Confidence 99999976 69999999985 44 5666666644 3 359999999
Q ss_pred CCEEEEecCCCeEEEEecC
Q 012535 410 GGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 410 ~~~l~s~~~dg~i~iw~~~ 428 (461)
+++|++++.||.|++|+++
T Consensus 406 ~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp SSEEEEEESSSCCEEEECC
T ss_pred CceEEEEecCceEEEEeec
Confidence 9999999999999999986
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=288.62 Aligned_cols=306 Identities=13% Similarity=0.218 Sum_probs=231.6
Q ss_pred cccccceEEEEEcCCCC-EEEEe----------ecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCC
Q 012535 32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (461)
+.+...|.+++|+|+|+ +||+| +.||.|+|||+.++... +....+ .|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~-~~~ 67 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIASL-QVD 67 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSCCC-CCS
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEEEE-ecC
Confidence 34567899999999987 99999 88999999999875421 011122 355
Q ss_pred cchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccC----CceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 101 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
..|++++|+ +++.+|++++.||.|++|++.. .+.......+ .+.+. +
T Consensus 68 ------------~~v~~~~~s--~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h--------~~~v~-------~ 118 (416)
T 2pm9_A 68 ------------SKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH--------SSSVK-------T 118 (416)
T ss_dssp ------------SCEEEEEEC--SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS--------SSCCC-------E
T ss_pred ------------CceEEEEEC--CCCCeEEEEccCCeEEEeecccccccccchhhccCC--------ccceE-------E
Confidence 779999999 5678999999999999999987 2233333222 23344 7
Q ss_pred ceeecC-CCcccccccCCCCCccccccCCCcEEeeeeecccCccc---cceeeEeeecccccceeeEEeCCC-CCEEEEe
Q 012535 177 KSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL---VAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (461)
Q Consensus 177 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~ 251 (461)
++|+|+ +.. +++++.|+.|++|| +....... ...... ...+|...|.+++|+|+ +.+|+++
T Consensus 119 ~~~~~~~~~~------------l~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 119 VKFNAKQDNV------------LASGGNNGEIFIWD-MNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEECSSSTTB------------EEEECSSSCEEBCB-TTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred EEEcCCCCCE------------EEEEcCCCeEEEEE-CCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEE
Confidence 899998 666 49999999999999 54433100 000111 12578899999999999 7889998
Q ss_pred -CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---eEEEEECCCccccccccccccc
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
.|+.|++||+++.+....+. .. ....+|...|.+++|+|++..+|++++.|+ .|++||++++... +..+.
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~- 258 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLS-YT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLN- 258 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEEC-CC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCC-
T ss_pred cCCCCEEEEECCCCCcceEEe-cc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEee-
Confidence 89999999998655433221 00 112234788999999999757999999999 9999999886321 33333
Q ss_pred ccCCCccccccccccceeEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
.+|...|.+++|+| ++++|++++ |+.|++||+++ ++++..+..|...+ .+++
T Consensus 259 ----------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~ 312 (416)
T 2pm9_A 259 ----------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTK 312 (416)
T ss_dssp ----------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEE
T ss_pred ----------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEE
Confidence 03447899999999 899999976 69999999996 88899999988766 4999
Q ss_pred EecCC-CEEEEecCCCeEEEEecCCCCcc
Q 012535 406 LSGDG-GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 406 ~s~~~-~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
|+|++ .+|++++.||.|++|++.+++..
T Consensus 313 ~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 313 FAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp ECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred ECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 99999 89999999999999999987644
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-36 Score=273.89 Aligned_cols=275 Identities=17% Similarity=0.257 Sum_probs=216.8
Q ss_pred ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccc
Q 012535 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (461)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (461)
.+....+.+|. ..|.+++|+ +++.+|++++.||+|++||+.+++.......+ ...+.
T Consensus 45 ~~~~~~l~gH~------------~~v~~~~~s--~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~--------~~~v~- 101 (340)
T 1got_B 45 MRTRRTLRGHL------------AKIYAMHWG--TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR--------SSWVM- 101 (340)
T ss_dssp CCEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEECS--------SSCEE-
T ss_pred chhheeecCCC------------CceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCcceEeecC--------CccEE-
Confidence 34556788998 889999999 56889999999999999999988766655543 23344
Q ss_pred cccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE
Q 012535 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (461)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (461)
+++|+|+++.+ ++++.|+.+++|+ +...+. ....... +.+|...|.++.|++++. ++
T Consensus 102 ------~~~~s~~~~~l------------~s~~~d~~v~iw~-~~~~~~--~~~~~~~-~~~h~~~v~~~~~~~~~~-l~ 158 (340)
T 1got_B 102 ------TCAYAPSGNYV------------ACGGLDNICSIYN-LKTREG--NVRVSRE-LAGHTGYLSCCRFLDDNQ-IV 158 (340)
T ss_dssp ------EEEECTTSSEE------------EEEETTCEEEEEE-TTTCSB--SCEEEEE-EECCSSCEEEEEEEETTE-EE
T ss_pred ------EEEECCCCCEE------------EEEeCCCeEEEEE-CccCCC--cceeEEE-ecCCCccEEEEEECCCCc-EE
Confidence 78999999985 9999999999999 543221 1122233 378999999999998876 56
Q ss_pred Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
++ .|+.|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.. +..+..|
T Consensus 159 s~s~d~~i~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~----~~~~~~h 225 (340)
T 1got_B 159 TSSGDTTCALWDIETGQQTT--------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMC----RQTFTGH 225 (340)
T ss_dssp EEETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEEECCC
T ss_pred EEECCCcEEEEECCCCcEEE--------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCee----EEEEcCC
Confidence 66 89999999998655432 466799999999999998 9999999999999999998764 3444444
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
...|.+++|+|++++|++|+ |+.|++||++. ++.+..+.. ... ...|.+++|+
T Consensus 226 ------------~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~-~~~------------~~~v~~~~~s 279 (340)
T 1got_B 226 ------------ESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSH-DNI------------ICGITSVSFS 279 (340)
T ss_dssp ------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC-TTC------------CSCEEEEEEC
T ss_pred ------------cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEcc-CCc------------ccceEEEEEC
Confidence 47899999999999999987 69999999985 555555432 211 1124699999
Q ss_pred cCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcccccc
Q 012535 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
|++++|++|+.||.|++||+.+++.. ..+.+|..++......
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~s 321 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRA-GVLAGHDNRVSCLGVT 321 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEe-eEeecCCCcEEEEEEc
Confidence 99999999999999999999988655 6778888877655443
No 41
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=268.95 Aligned_cols=284 Identities=16% Similarity=0.235 Sum_probs=220.3
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
.+++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|. ..|+
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 71 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 71 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEE
Confidence 35789999986 888775 899999999887632 112345566 7799
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCC
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (461)
+++|+ ++++++++|+.||+|++|++++++.......+... ...+++++..+
T Consensus 72 ~v~~~--~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~~l---------- 122 (318)
T 4ggc_A 72 SVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-----------------VGSLSWNSYIL---------- 122 (318)
T ss_dssp EEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------------EEEEEEETTEE----------
T ss_pred EEEEC--CCCCEEEEEECCCcEEEeecCCceeEEEecCccce-----------------EEEeecCCCEE----------
Confidence 99999 56889999999999999999999877766554221 23556666664
Q ss_pred ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
++++.++.+++|+ ..... ..... ..+|...+..+++.+++++|+++ .|+.|++||+++++......
T Consensus 123 --~s~~~~~~~~~~~-~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---- 189 (318)
T 4ggc_A 123 --SSGSRSGHIHHHD-VRVAE-----HHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---- 189 (318)
T ss_dssp --EEEETTSEEEEEE-TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----
T ss_pred --EEEecCCceEeee-cCCCc-----eeEEE-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----
Confidence 9999999999998 32211 12222 37899999999999999999999 89999999998765432211
Q ss_pred CCCCCCCcceEEEEEeCCCCCeE--EEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 276 ANMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~~p~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
.....+...|.+++++|++..++ ++++.++.|++||.+..... ... .+ ...+..+.|+|++
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~-~~------------~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAV-DA------------HSQVCSILWSPHY 252 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEE-EC------------SSCEEEEEEETTT
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----ccc-cc------------eeeeeeeeecccc
Confidence 12445778899999999875554 45677899999999887541 222 12 2679999999999
Q ss_pred CEEEEe--c-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 354 RHILSR--D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 354 ~~l~s~--~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
..++++ + |+.|++||+++ ++++..+.+|...+ ++++|+||+++|+||+.||.|+|||+...
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 988764 2 59999999996 89999999998876 59999999999999999999999999754
No 42
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=287.14 Aligned_cols=319 Identities=13% Similarity=0.125 Sum_probs=222.5
Q ss_pred cccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..|.+.|++++|+| ++++||+|+.||+|+|||+.+.... ...+....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-----------------~~~~~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-----------------EVYSSSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-----------------CCCSCSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-----------------cccceeeec-cCC----------
Confidence 46889999999999 9999999999999999998762110 000111122 366
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEcc---CCceeEEeeeecCCCccC----CCCCccccccccCcce--eec
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAA----GNGPIFGSHVSAIPKS--YMA 181 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~---~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~--~~~ 181 (461)
..|.+++|+ +++.+|++++.||+|++||+. .++.......+....... ....+. ++. +++
T Consensus 112 --~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~ 180 (437)
T 3gre_A 112 --STVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-------RMRAFVNE 180 (437)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-------EEEEEECS
T ss_pred --CCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-------EEEEEEcC
Confidence 779999999 567799999999999999995 555444333221000000 011111 223 345
Q ss_pred CCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecc--cccceeeEEeCCCCCEEEEe-CCCeEEE
Q 012535 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINL 258 (461)
Q Consensus 182 ~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~d~~i~i 258 (461)
++.. +++++.|+.|++|| +.. ..+...+ .+ |...|.+++|+|++++|++| .||.|++
T Consensus 181 ~~~~------------l~~~~~d~~i~iwd-~~~------~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 240 (437)
T 3gre_A 181 EKSL------------LVALTNLSRVIIFD-IRT------LERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDI 240 (437)
T ss_dssp SCEE------------EEEEETTSEEEEEE-TTT------CCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCE------------EEEEeCCCeEEEEe-CCC------CeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 5655 59999999999999 433 2233333 44 88999999999999999999 8999999
Q ss_pred EEccCCCCceeeeccCCCCCCCCCcceEEEEEeC----CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
||+++......+ ...|...|.+++|+| ++ .+|++|+.||.|++||+++++. +..+..+......
T Consensus 241 wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~ 308 (437)
T 3gre_A 241 WDIRFNVLIRSW-------SFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHC----QYAFINSDEQPSM 308 (437)
T ss_dssp EETTTTEEEEEE-------BCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEE----EEEEESSSSCCCG
T ss_pred EEcCCccEEEEE-------ecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcE----EEEEEcCCCCCcc
Confidence 999864433221 114677899996655 56 7999999999999999998775 3444443322111
Q ss_pred c------------cccc--cccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCcccccc---------
Q 012535 335 S------------FFTE--IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLC--------- 390 (461)
Q Consensus 335 ~------------~~~~--h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--------- 390 (461)
. .+.+ |...|.+++|+ ++++|++|+ |+.|++||+.+ ++....+.+|........
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (437)
T 3gre_A 309 EHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLT 386 (437)
T ss_dssp GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEE
T ss_pred ceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceE
Confidence 1 2333 88899999999 788999987 69999999996 787888877532111000
Q ss_pred ----------------ccccCCCccceeeEEEecC--CCEEEEecCCCeEEEEe
Q 012535 391 ----------------DLYENDSIFDKFECCLSGD--GGRVATGSYSNLFRVFG 426 (461)
Q Consensus 391 ----------------~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~ 426 (461)
...+. ..|.+++|+++ +.+|++|+.||.|+||+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~h~---~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 387 MLLRKMKRTSTHSVDDSLYHH---DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEECC-------------C---CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEecccccccccCcccccc---cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 00122 24569999998 77999999999999995
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=278.92 Aligned_cols=302 Identities=11% Similarity=0.087 Sum_probs=218.7
Q ss_pred cccccceEEEEEcCCCC-EEEEeec---CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcc
Q 012535 32 VQEVDIISAIEFDKSGD-HLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (461)
..|.+.|++++|+|++. ++++|+. ||.|+|||+.+++.. .....+|.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~------- 65 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------------LLREIEKA------- 65 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------------EEEEEEES-------
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------------ceeeeccc-------
Confidence 35999999999999996 5556665 999999999876521 11122565
Q ss_pred ccccccceEEEEEeecC-CCcEEEEEeCCCeEEEEEccCCc-eeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 108 SLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 108 ~~~~~~~v~~v~~~p~~-~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
..|.+++|+|.. ++.+|++++.||.|++||+.+++ .......+ .+.+....+.+ .++|+|++..
T Consensus 66 -----~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~s~~~~~ 131 (357)
T 3i2n_A 66 -----KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH--------KEIINAIDGIG-GLGIGEGAPE 131 (357)
T ss_dssp -----SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC--------SSCEEEEEEES-GGGCC-CCCE
T ss_pred -----CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec--------ccceEEEeecc-ccccCCCccE
Confidence 779999999632 26799999999999999999876 44444333 22343111111 2367788887
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccc----ccceeeEE----eCCCCCEEEEe-CCCeE
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSIS----NNSDGETFISA-DDLRI 256 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~----~~~~~~~l~~~-~d~~i 256 (461)
+ ++++.|+.|++|| +..... ....+ ..| ...+.+++ |+|++++|+++ .|+.|
T Consensus 132 l------------~~~~~d~~i~vwd-~~~~~~-----~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i 192 (357)
T 3i2n_A 132 I------------VTGSRDGTVKVWD-PRQKDD-----PVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDI 192 (357)
T ss_dssp E------------EEEETTSCEEEEC-TTSCSS-----CSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEE
T ss_pred E------------EEEeCCCeEEEEe-CCCCCC-----cceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeE
Confidence 5 9999999999999 543221 11111 222 33788888 78999999999 89999
Q ss_pred EEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC---CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCc
Q 012535 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (461)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (461)
++||+++.+... ...|...|.+++|+| ++ .+|++++.||.|++||++++.. ...+...
T Consensus 193 ~i~d~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~----- 253 (357)
T 3i2n_A 193 KLFDLRNMALRW---------ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHP----TKGFASV----- 253 (357)
T ss_dssp EEEETTTTEEEE---------EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEET----TTEEEEE-----
T ss_pred EEEECccCceee---------ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCc----ccceeee-----
Confidence 999998655322 344788999999999 77 8999999999999999988654 2222210
Q ss_pred cccccccccceeEEEEccCCC-EEEEec-CCeEEEEEccCCC------------------CCeeEEeeccCccccccccc
Q 012535 334 RSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDS------------------GPVATFQVHEHLRPKLCDLY 393 (461)
Q Consensus 334 ~~~~~~h~~~v~~l~~s~~g~-~l~s~~-d~~i~vwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 393 (461)
.+.+|...|.+++|+|+++ +|++++ ||.|++||++... +.+..+.+|...+
T Consensus 254 --~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v------- 324 (357)
T 3i2n_A 254 --SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI------- 324 (357)
T ss_dssp --EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE-------
T ss_pred --ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe-------
Confidence 1224558899999999998 788876 6999999998522 2355566666554
Q ss_pred cCCCccceeeEEEecCCCEEE-EecCCCeEEEEecCCCC
Q 012535 394 ENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~~~~ 431 (461)
.+++|+|++++|+ +++.||.|++||+.+.+
T Consensus 325 --------~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 325 --------SSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --------EEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred --------eEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 5999999999998 89999999999998654
No 44
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.8e-37 Score=280.23 Aligned_cols=308 Identities=13% Similarity=0.150 Sum_probs=226.6
Q ss_pred ccccceEEEEEcCC----CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccc--cCCCcchhhc
Q 012535 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFDYL 106 (461)
Q Consensus 33 ~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~ 106 (461)
+|.+.|++++|+|+ ...+++++.++.|++||+.+++.. ..+..+ ..|.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------------~~~~~~~~~~~~------ 69 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------------RLLQSYVDADAD------ 69 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------------EEEEEEECSCTT------
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------------EeeeeccccCCC------
Confidence 69999999999984 456777777889999999865421 011111 1244
Q ss_pred cccccccceEEEEEeecCC--CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeec-CC
Q 012535 107 KSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NG 183 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g 183 (461)
..|.+++|+|..+ +.+|++++.||.|++||+.+++.......+ .+.+. +++|+| ++
T Consensus 70 ------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------~~~i~-------~~~~~~~~~ 128 (366)
T 3k26_A 70 ------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH--------GNAIN-------ELKFHPRDP 128 (366)
T ss_dssp ------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC--------CSCEE-------EEEECSSCT
T ss_pred ------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC--------CCcEE-------EEEECCCCC
Confidence 6799999997543 679999999999999999988876665533 23455 789999 77
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEee--ecccccceeeEEeCCCCCEEEEe-CCCeEEEEE
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (461)
..+ ++++.|+.|++|| +.. ......+ ..+|...|.+++|+|++++|+++ .|+.|++||
T Consensus 129 ~~l------------~s~~~dg~i~iwd-~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 189 (366)
T 3k26_A 129 NLL------------LSVSKDHALRLWN-IQT------DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189 (366)
T ss_dssp TEE------------EEEETTSCEEEEE-TTT------TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEE------------EEEeCCCeEEEEE-eec------CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEE
Confidence 774 9999999999999 432 1222222 15799999999999999999999 899999999
Q ss_pred ccCCCCceeeec--------------------cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccc
Q 012535 261 LEISNQSFNIVD--------------------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (461)
Q Consensus 261 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 320 (461)
+++.+....+.. ........|...|.+++|+ + .+|++++.|+.|++||+++....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~-- 264 (366)
T 3k26_A 190 INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDD-- 264 (366)
T ss_dssp SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCC--
T ss_pred CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCcccc--
Confidence 986432211100 0001233488999999999 5 79999999999999999876532
Q ss_pred ccccccccc-CCCccccccccccceeEEEEccC--CCEEEEec-CCeEEEEEccCCCCCe----eEEeec--cCcccccc
Q 012535 321 HSKLFEEQE-APGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPV----ATFQVH--EHLRPKLC 390 (461)
Q Consensus 321 ~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~~--g~~l~s~~-d~~i~vwd~~~~~~~~----~~~~~~--~~~~~~~~ 390 (461)
...+..+. .......+.+|...|.+++|+|+ +++|++|+ ||.|++||+.. +++. ..+..| ...
T Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~----- 337 (366)
T 3k26_A 265 -IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAA----- 337 (366)
T ss_dssp -GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSC-----
T ss_pred -ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCc-----
Confidence 11111111 11123345567789999999999 99999987 59999999986 5443 366666 333
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
|.+++|+|++++|++++.||.|++||+.
T Consensus 338 ----------v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 ----------IRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ----------EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 3599999999999999999999999985
No 45
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.7e-36 Score=273.21 Aligned_cols=278 Identities=16% Similarity=0.241 Sum_probs=218.1
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
+....+.+|. ..|++++|+ +++.+|++|+.||+|++||..+++.......+. ..+.
T Consensus 55 ~~~~~l~gH~------------~~V~~~~~s--~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~--------~~v~-- 110 (354)
T 2pbi_B 55 KTRRTLKGHG------------NKVLCMDWC--KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--------TWVM-- 110 (354)
T ss_dssp CEEEEEECCS------------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--------SCCC--
T ss_pred EEEEEecCCC------------CeEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCCcceEEecCC--------CCEE--
Confidence 3456788998 889999999 567899999999999999998887665554432 2233
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
+++|+|+|..+ ++++.|+.+++|+ +.............. +.+|...|.+++|+|++..|++
T Consensus 111 -----~~~~sp~g~~l------------asg~~d~~i~v~~-~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t 171 (354)
T 2pbi_B 111 -----ACAYAPSGCAI------------ACGGLDNKCSVYP-LTFDKNENMAAKKKS-VAMHTNYLSACSFTNSDMQILT 171 (354)
T ss_dssp -----EEEECTTSSEE------------EEESTTSEEEEEE-CCCCTTCCSGGGCEE-EEECSSCEEEEEECSSSSEEEE
T ss_pred -----EEEECCCCCEE------------EEeeCCCCEEEEE-Eecccccccccccee-eeccCCcEEEEEEeCCCCEEEE
Confidence 78999999986 9999999999999 433221111122222 3689999999999999999999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
+ .|++|++||+++++... .+.+|...|.+++|+|+ + .+|++|+.||.|++||+++++. +..+..
T Consensus 172 ~s~D~~v~lwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~----~~~~~~ 238 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQLLQ--------SFHGHGADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQC----VQAFET 238 (354)
T ss_dssp EETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCE----EEEECC
T ss_pred EeCCCcEEEEeCCCCeEEE--------EEcCCCCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecC
Confidence 9 89999999998665432 46679999999999884 4 7999999999999999998765 445554
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
|. ..|.+++|+|++.+|++|+ |++|++||++. .+.+..+..+.. ...+.+++|
T Consensus 239 h~------------~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~ 292 (354)
T 2pbi_B 239 HE------------SDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDF 292 (354)
T ss_dssp CS------------SCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEE
T ss_pred CC------------CCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEE
Confidence 44 7899999999999999977 69999999985 555555543321 112358999
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCccccccc
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (461)
+|++++|++|+.|+.|++||+.+++.. ..+.+|..++.....++
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTLRVSP 336 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECT
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceE-EEEECCCCcEEEEEECC
Confidence 999999999999999999999988765 57778888776655443
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=282.86 Aligned_cols=296 Identities=15% Similarity=0.219 Sum_probs=222.3
Q ss_pred cccccccceEEEEEcCCCC-EEEEeecCCcEEEEEc----CCCCCCCCcccccccccccccCCccccccccc------cC
Q 012535 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF------QS 98 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 98 (461)
....|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++..-. +. +...+...+ .+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~---------~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK----LT---------IIAELRHPFALSASSGK 106 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE----EE---------EEEEEECCCCCC-----
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc----cc---------ccccccccccccccccC
Confidence 3556779999999999999 9999999999999999 66541000 00 000011112 22
Q ss_pred CCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcce
Q 012535 99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (461)
Q Consensus 99 h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (461)
|. ..|++++|+ +++.+|++++.||.|++|+ .+++.......+ .+.+. +++
T Consensus 107 ~~------------~~v~~~~~s--~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~--------~~~v~-------~~~ 156 (425)
T 1r5m_A 107 TT------------NQVTCLAWS--HDGNSIVTGVENGELRLWN-KTGALLNVLNFH--------RAPIV-------SVK 156 (425)
T ss_dssp -C------------BCEEEEEEC--TTSSEEEEEETTSCEEEEE-TTSCEEEEECCC--------CSCEE-------EEE
T ss_pred CC------------CceEEEEEc--CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCC--------CccEE-------EEE
Confidence 44 679999999 5688999999999999999 444444444332 23344 789
Q ss_pred eecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccc---------------eeeEEeCC
Q 012535 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH---------------INSISNNS 243 (461)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~i~~~~ 243 (461)
|+|+++.+ ++++.++.|++|| +... .....+ ..+... +.+++|++
T Consensus 157 ~~~~~~~l------------~~~~~d~~i~iwd-~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 157 WNKDGTHI------------ISMDVENVTILWN-VISG------TVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp ECTTSSEE------------EEEETTCCEEEEE-TTTT------EEEEEE-CCC---------------CCCBSCCEEEE
T ss_pred ECCCCCEE------------EEEecCCeEEEEE-CCCC------cEEEEe-eccccCccceeeccccCCcceeeEEEEcC
Confidence 99999985 9999999999999 4321 222222 344444 89999999
Q ss_pred CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccc
Q 012535 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (461)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (461)
++. ++++ .++.|++||+++..... .+..|...|.+++|+|++ .+|++++.|+.|++||+++++. +
T Consensus 217 ~~~-~~~~~~~g~i~~~d~~~~~~~~--------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~ 282 (425)
T 1r5m_A 217 DDK-FVIPGPKGAIFVYQITEKTPTG--------KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS----Q 282 (425)
T ss_dssp TTE-EEEECGGGCEEEEETTCSSCSE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----S
T ss_pred CCE-EEEEcCCCeEEEEEcCCCceee--------eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----c
Confidence 865 5555 89999999998665443 345688999999999998 8999999999999999988764 3
Q ss_pred cccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccce
Q 012535 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (461)
..+..+ ...|.+++|+|++ +|++++ |+.|++||+++ ++.+..+..|...+
T Consensus 283 ~~~~~~------------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i--------------- 333 (425)
T 1r5m_A 283 NCFYGH------------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPI--------------- 333 (425)
T ss_dssp EEECCC------------SSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCE---------------
T ss_pred eEecCC------------CccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccE---------------
Confidence 444444 3789999999999 777765 69999999986 78888888877665
Q ss_pred eeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
.+++|+|++++|++++.||.|++||+.+++
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 499999999999999999999999998775
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-36 Score=278.85 Aligned_cols=285 Identities=12% Similarity=0.226 Sum_probs=215.7
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccC-CCcchhhccccccccceE
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~v~ 116 (461)
+.+++|++ ..+++++.||.|++|++.+++. ...+.. |. ..|.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~-----------------------~~~~~~~~~------------~~v~ 138 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV-----------------------SALAETDES------------TYVA 138 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCE-----------------------EEEEECCTT------------CCEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcE-----------------------eEeeecCCC------------CCEE
Confidence 45577765 5688888999999999987652 122222 55 7799
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCC
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (461)
+++|+ +++.+|++++.||.|++||+.+++.......+ .+.+. +++| ++..
T Consensus 139 ~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~-------~~~~--~~~~----------- 188 (401)
T 4aez_A 139 SVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH--------QARVG-------CLSW--NRHV----------- 188 (401)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCC--------SSCEE-------EEEE--ETTE-----------
T ss_pred EEEEC--CCCCEEEEECCCCeEEEEECcCCeEEEEecCC--------CCceE-------EEEE--CCCE-----------
Confidence 99999 56789999999999999999988776665543 22344 5566 4455
Q ss_pred ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCC
Q 012535 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (461)
+++++.|+.|++|| +.... ..... +.+|...|.+++|+|++++|+++ .|+.|++||+++.....
T Consensus 189 -l~~~~~dg~i~i~d-~~~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------- 253 (401)
T 4aez_A 189 -LSSGSRSGAIHHHD-VRIAN-----HQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF------- 253 (401)
T ss_dssp -EEEEETTSEEEEEE-TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE-------
T ss_pred -EEEEcCCCCEEEEe-cccCc-----ceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE-------
Confidence 49999999999999 43211 12223 37899999999999999999999 89999999998654433
Q ss_pred CCCCCCCcceEEEEEeCCCCCeEEEEe--cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 276 ANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
.+..|...|.+++|+|++..++++++ .|+.|++||+++++. +..+..+ ..|.+++|+|++
T Consensus 254 -~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~~~~-------------~~v~~~~~s~~~ 315 (401)
T 4aez_A 254 -TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTVDAG-------------SQVTSLIWSPHS 315 (401)
T ss_dssp -EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEEECS-------------SCEEEEEECSSS
T ss_pred -EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEEeCC-------------CcEEEEEECCCC
Confidence 35568899999999998867788766 799999999998765 3444322 579999999999
Q ss_pred CEEEE--ec-CCeEEEEEccCCCCCee--EEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 354 RHILS--RD-YMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 354 ~~l~s--~~-d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
++|++ |. ||.|++||+.. ++... .+.+|...+ .+++|+|++++|++++.||.|++|++.
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 99998 43 69999999985 44443 355676655 499999999999999999999999999
Q ss_pred CCCccceeec
Q 012535 429 EGSAESTTLE 438 (461)
Q Consensus 429 ~~~~~~~~~~ 438 (461)
+++.......
T Consensus 380 ~~~~~~~~~~ 389 (401)
T 4aez_A 380 DGDHVKRPIP 389 (401)
T ss_dssp C---------
T ss_pred CCcccccccc
Confidence 8876644433
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=273.85 Aligned_cols=320 Identities=13% Similarity=0.166 Sum_probs=227.6
Q ss_pred ccccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...|.+.|++++|+| ++++||+|+.||.|++||+.++.......... . .........+|.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~--------- 99 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA--V--------CSIGRDHPDVHR--------- 99 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE--E--------EEECTTCTTCCS---------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc--c--------ccccccccccCC---------
Confidence 346999999999999 99999999999999999998876431110000 0 000001123466
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+| .++.+|++++.||.|++||+.+++......... .+. .+.+.+.+..
T Consensus 100 ---~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~-------~~~~~~~~~~---- 155 (408)
T 4a11_B 100 ---YSVETVQWYP-HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE---------TVY-------SHHMSPVSTK---- 155 (408)
T ss_dssp ---SCEEEEEECT-TCTTCEEEEETTSEEEEEETTTTEEEEEEECSS---------CEE-------EEEECSSCSS----
T ss_pred ---CcEEEEEEcc-CCCcEEEEEeCCCeEEEeeCCCCccceeccCCC---------cee-------eeEeecCCCC----
Confidence 7899999995 256799999999999999999987766655321 122 4566664431
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
...+++++.++.|++|| +... ..... +.+|...|.+++|+|+++ +|+++ .||.|++||++.....
T Consensus 156 -----~~~~~~~~~~~~v~~~d-~~~~------~~~~~-~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 156 -----HCLVAVGTRGPKVQLCD-LKSG------SCSHI-LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp -----CCEEEEEESSSSEEEEE-SSSS------CCCEE-ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred -----CcEEEEEcCCCeEEEEe-CCCc------ceeee-ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 11259999999999999 4332 22223 368999999999999998 47788 8999999999876544
Q ss_pred eeeecc--------CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccc
Q 012535 268 FNIVDV--------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 268 ~~~~~~--------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
...+.. .......|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+..+.... .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~------~ 291 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENT----LVNYGKVCNN------S 291 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBC----CCCCCCCCCC------C
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccc----eecccccccc------c
Confidence 333211 012235688999999999998 99999999999999999987642 2221111000 0
Q ss_pred cccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 340 IIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
.......+.....+.+++++.++.|++||+.+ ++++..+.+|...+ .+++|+|++++|++|+.|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTV---------------DCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTT-CCEEEEECCCSSCE---------------EEEEEETTTTEEEEEETT
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcC-CcceeeeccCCCeE---------------EEEEEcCCCCEEEEECCC
Confidence 00122233333455666667789999999996 89999999998765 499999999999999999
Q ss_pred CeEEEEecCCCCcc
Q 012535 420 NLFRVFGCSEGSAE 433 (461)
Q Consensus 420 g~i~iw~~~~~~~~ 433 (461)
|.|++||+.+++..
T Consensus 356 g~i~iw~~~~~~~~ 369 (408)
T 4a11_B 356 CNILAWVPSLYEPV 369 (408)
T ss_dssp SCEEEEEECC----
T ss_pred CeEEEEeCCCCCcc
Confidence 99999999988654
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=266.39 Aligned_cols=281 Identities=16% Similarity=0.213 Sum_probs=219.8
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|++++| |++++|++|+.||.|++||+.+++ ....+..|.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~---------- 59 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ---------- 59 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS----------
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC----------
Confidence 3479999999999 999999999999999999997654 344566776
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc---eeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
..|.+++|+ +++.++++++.|+.|++|++.... .......+ .+.+. +++| ++..
T Consensus 60 --~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~--------~~~i~-------~~~~--~~~~-- 116 (313)
T 3odt_A 60 --GFLNSVCYD--SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH--------QGNVC-------SLSF--QDGV-- 116 (313)
T ss_dssp --SCEEEEEEE--TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC--------SSCEE-------EEEE--ETTE--
T ss_pred --ccEEEEEEC--CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc--------ccCEE-------EEEe--cCCE--
Confidence 779999999 567899999999999999987643 22222211 22333 4455 4555
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
+++++.|+.|++|| . ...... ...|...+.+++|.| +++.++++ .|+.|++||...
T Consensus 117 ----------l~~~~~d~~i~~~d-~--------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-- 174 (313)
T 3odt_A 117 ----------VISGSWDKTAKVWK-E--------GSLVYN-LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-- 174 (313)
T ss_dssp ----------EEEEETTSEEEEEE-T--------TEEEEE-EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--
T ss_pred ----------EEEEeCCCCEEEEc-C--------CcEEEe-cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--
Confidence 49999999999998 1 122222 367899999999988 89999998 899999999432
Q ss_pred CceeeeccCCCCCCC-CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 266 QSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
.. . .+.. |...+.+++|+|++ . +++++.||.|++||+++++. +..+..+. ..|
T Consensus 175 ~~-~-------~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~------------~~i 228 (313)
T 3odt_A 175 VI-K-------TFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV----LRTYEGHE------------SFV 228 (313)
T ss_dssp EE-E-------EECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE----EEEEECCS------------SCE
T ss_pred eE-E-------EEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh----hhhhhcCC------------ceE
Confidence 12 1 2333 78899999999998 5 99999999999999998765 44554444 789
Q ss_pred eEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
.+++|+|++.+++++.|+.|++||+.+ ++++..+..|...+ .+++|+|+++ +++++.||.|++
T Consensus 229 ~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 229 YCIKLLPNGDIVSCGEDRTVRIWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp EEEEECTTSCEEEEETTSEEEEECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEE
T ss_pred EEEEEecCCCEEEEecCCEEEEEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEE
Confidence 999999999544344579999999996 88888998887654 4999999998 567899999999
Q ss_pred EecCCCCcc
Q 012535 425 FGCSEGSAE 433 (461)
Q Consensus 425 w~~~~~~~~ 433 (461)
||+.+++..
T Consensus 292 w~~~~~~~~ 300 (313)
T 3odt_A 292 FSQEKSRWA 300 (313)
T ss_dssp EESCGGGCC
T ss_pred EeCCCCcee
Confidence 999977543
No 50
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.3e-35 Score=263.20 Aligned_cols=277 Identities=18% Similarity=0.287 Sum_probs=220.8
Q ss_pred CCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCC
Q 012535 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (461)
Q Consensus 86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (461)
..|.+.....+.+|. ..|++++|+ +++.+|++++.||.|++|++.+++.......+ ..
T Consensus 9 ~~~~~~~~~~~~gh~------------~~v~~~~~s--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h--------~~ 66 (312)
T 4ery_A 9 VKPNYALKFTLAGHT------------KAVSSVKFS--PNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KL 66 (312)
T ss_dssp CCCCCEEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCC--------SS
T ss_pred CCCCceeEEEEcccC------------CcEEEEEEC--CCCCEEEEeeCCCeEEEEeCCCcccchhhccC--------CC
Confidence 446677778889998 889999999 56889999999999999999988776665443 23
Q ss_pred CccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC
Q 012535 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (461)
Q Consensus 166 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (461)
.+. +++|+|+++.+ ++++.|+.|++|| +.. ..+...+ .+|...|.+++|+|++
T Consensus 67 ~v~-------~~~~~~~~~~l------------~s~~~d~~i~vwd-~~~------~~~~~~~-~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 67 GIS-------DVAWSSDSNLL------------VSASDDKTLKIWD-VSS------GKCLKTL-KGHSNYVFCCNFNPQS 119 (312)
T ss_dssp CEE-------EEEECTTSSEE------------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEECSSS
T ss_pred ceE-------EEEEcCCCCEE------------EEECCCCEEEEEE-CCC------CcEEEEE-cCCCCCEEEEEEcCCC
Confidence 344 78999999985 9999999999999 432 2233333 7899999999999999
Q ss_pred CEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccc
Q 012535 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (461)
Q Consensus 246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (461)
++|+++ .|+.|++||+++.+... .+..|...|.+++|+|++ .+|++++.||.|++||+++++. +..
T Consensus 120 ~~l~s~~~d~~i~iwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~----~~~ 186 (312)
T 4ery_A 120 NLIVSGSFDESVRIWDVKTGKCLK--------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC----LKT 186 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEE
T ss_pred CEEEEEeCCCcEEEEECCCCEEEE--------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce----eeE
Confidence 999999 89999999998655432 356688999999999998 8999999999999999998764 222
Q ss_pred cccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceee
Q 012535 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (461)
+... +...+..++|+|++++|++++ |+.|++||+++ ++.+..+.+|......+ .
T Consensus 187 ~~~~-----------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~-------------~ 241 (312)
T 4ery_A 187 LIDD-----------DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCI-------------F 241 (312)
T ss_dssp ECCS-----------SCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSCC-------------C
T ss_pred Eecc-----------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEEE-------------E
Confidence 2211 225799999999999999976 69999999996 78888888877543211 2
Q ss_pred EEEe-cCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcccccc
Q 012535 404 CCLS-GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 404 ~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
..++ +++.+|++|+.||.|++||+.+++.. ..+.+|..++.....+
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACH 288 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEE-EEECCCSSCEEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhh-hhhhccCCcEEEEeec
Confidence 3444 67889999999999999999988655 6778887776554443
No 51
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-35 Score=272.60 Aligned_cols=291 Identities=14% Similarity=0.177 Sum_probs=217.3
Q ss_pred cccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcc
Q 012535 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (461)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (461)
+..+...+.+|. ..|++++|+ +++.+|++|+.|++|++||+.+++.......+. ..+.
T Consensus 55 ~~~~~~~l~gH~------------~~V~~~~~s--p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--------~~v~ 112 (380)
T 3iz6_a 55 DLVCCRTLQGHS------------GKVYSLDWT--PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--------PWVM 112 (380)
T ss_dssp CCEEEEEECCCS------------SCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--------TTCC
T ss_pred eeEEeecccccc------------cEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCccceEEecCC--------CCEE
Confidence 344667789998 889999999 567899999999999999999887766665542 2344
Q ss_pred ccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCcccc-ceeeEeeecccccceeeEEeCCC-CC
Q 012535 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLV-AGCRRIYAHAHDYHINSISNNSD-GE 246 (461)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~-~~ 246 (461)
+++|+|+|+.+ ++++.|+.+++|+ +........ ....+. +.+|...|.+++|.|+ +.
T Consensus 113 -------~~~~s~~g~~l------------as~~~d~~v~iw~-~~~~~~~~~~~~~~~~-~~gh~~~v~~~~~~~~~~~ 171 (380)
T 3iz6_a 113 -------ECAFAPNGQSV------------ACGGLDSACSIFN-LSSQADRDGNMPVSRV-LTGHKGYASSCQYVPDQET 171 (380)
T ss_dssp -------CCEECTTSSEE------------EECCSSSCCEEEE-CCCCSSCCCSSTTCCB-CCCCSSCCCCCBCCSSSSS
T ss_pred -------EEEECCCCCEE------------EEeeCCCcEEEEE-CCCCccccCCccceee-ccCCCcceEEEEEecCCCC
Confidence 78999999986 9999999999999 543221111 111122 3789999999999997 45
Q ss_pred EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccc
Q 012535 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
.|++| .|++|++||+++++....+ . .....+|...|.+++|+|.+..+|++|+.|+.|++||++..... +..+
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~-~--~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~---~~~~ 245 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIF-G--SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA---VRTY 245 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEE-C--CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC---CEEE
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEe-e--cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc---eEEE
Confidence 68888 8999999999866543221 1 11235689999999998843389999999999999999854221 3444
Q ss_pred ccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeE
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (461)
.+ |.+.|.+++|+|++++|++|+ |++|++||+++ ++.+..+..+..... .....|.++
T Consensus 246 ~~------------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~ 304 (380)
T 3iz6_a 246 HG------------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSV 304 (380)
T ss_dssp CC------------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEE
T ss_pred CC------------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEE
Confidence 44 448899999999999999987 69999999996 777777765543210 111124599
Q ss_pred EEecCCCEEEEecCCCeEEEEecCCCCccceee----ccCCCCCcccccc
Q 012535 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL----EASKNPMSLFLHF 450 (461)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~ 450 (461)
+|+|+|++|++|+.||.|++||+..++... .+ .+|..++.....+
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVL-NLGTLQNSHEGRISCLGLS 353 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTTCCEEE-EECCSCSSCCCCCCEEEEC
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCceEE-EEecccCCCCCceEEEEEC
Confidence 999999999999999999999998876552 33 4566666554433
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-35 Score=275.77 Aligned_cols=290 Identities=16% Similarity=0.169 Sum_probs=217.3
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
..+++++|+|+|++|++|+.||.|++||+.+++. ...+..|. +
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-----------------------~~~~~~~~--------------~ 99 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-----------------------SKMLKRAD--------------Y 99 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET-----------------------TTTSCSCC--------------E
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccce-----------------------eeEEecCC--------------c
Confidence 4456899999999999999999999999876542 22344443 4
Q ss_pred EEE-EEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 116 NKI-RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 116 ~~v-~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
.++ .|+ +++.+|++++.||.|++||+.+++.......+ .+.+. +++|+|+++.+
T Consensus 100 ~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l-------- 154 (420)
T 3vl1_A 100 TAVDTAK--LQMRRFILGTTEGDIKVLDSNFNLQREIDQAH--------VSEIT-------KLKFFPSGEAL-------- 154 (420)
T ss_dssp EEEEEEC--SSSCEEEEEETTSCEEEECTTSCEEEEETTSS--------SSCEE-------EEEECTTSSEE--------
T ss_pred eEEEEEe--cCCCEEEEEECCCCEEEEeCCCcceeeecccc--------cCccE-------EEEECCCCCEE--------
Confidence 444 566 56789999999999999999988766554333 33455 88999999985
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
++++.|+.|++|| +...+ ....+ .+|...|.+++|+|++++|+++ .|+.|++||+++.+....+...
T Consensus 155 ----~s~s~d~~i~iwd-~~~~~------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 155 ----ISSSQDMQLKIWS-VKDGS------NPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp ----EEEETTSEEEEEE-TTTCC------CCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred ----EEEeCCCeEEEEe-CCCCc------CceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 9999999999999 43322 22333 7899999999999999999999 8999999999865543322100
Q ss_pred CC----------------CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccc
Q 012535 274 KP----------------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (461)
Q Consensus 274 ~~----------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (461)
.. .....+...+.+++|+|++ ++|++|+.||.|++||+++++.. ..+.
T Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~----------- 286 (420)
T 3vl1_A 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLP----------- 286 (420)
T ss_dssp TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEEC-----------
T ss_pred CCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEcc-----------
Confidence 00 0001123455666678888 89999999999999999887642 2222
Q ss_pred cccccceeEEEEccCCC-EEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEE
Q 012535 338 TEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (461)
Q Consensus 338 ~~h~~~v~~l~~s~~g~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (461)
.+|...|.+++|+|+++ +|++|+ ||.|++||+++...++..+..|.... |..+ +.+++++|++
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s 351 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVS 351 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEE
T ss_pred cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEE
Confidence 12347899999999998 888876 59999999997445678888754332 1355 5568899999
Q ss_pred ecCCCeEEEEecCCC
Q 012535 416 GSYSNLFRVFGCSEG 430 (461)
Q Consensus 416 ~~~dg~i~iw~~~~~ 430 (461)
++.||.|++|++...
T Consensus 352 ~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 352 SGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTTEEEEEEEECCT
T ss_pred ecCCccEEEEeccCC
Confidence 999999999999875
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.5e-36 Score=274.04 Aligned_cols=301 Identities=14% Similarity=0.136 Sum_probs=200.5
Q ss_pred EEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
.+.+.+++.++.+ +.+.....|++... ...+|+ ..|++++
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~---------------------------~p~~H~------------~~V~~v~ 49 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVT---------------------------APACME------------VQIGAVR 49 (357)
T ss_dssp ----------------------------------------------------------CCC------------SEEEEEE
T ss_pred CCCCCccceEEec-CCCccccccCCCCC---------------------------Cccccc------------CCEEEEE
Confidence 4555666645444 44667888987532 234677 7799999
Q ss_pred EeecCCCcEEEEEeC------CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 120 WCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 120 ~~p~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
|+ +||++|++++. |+.|++|+..++........... .....|. +++|+|+++.
T Consensus 50 fS--pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~----~~~~~V~-------~~~~s~d~~~-------- 108 (357)
T 4g56_B 50 YR--RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGV----QTEAGVT-------DVAWVSEKGI-------- 108 (357)
T ss_dssp EC--SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEE----ECSSCEE-------EEEEETTTEE--------
T ss_pred EC--CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccC----CCCCCEE-------EEEEcCCCCE--------
Confidence 99 67899999987 78899998776542211110000 0122344 7899999875
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
++++.||.|++|| +...+.... ......+|...|.+++|+|++++|+++ .|+.|++||+++++...
T Consensus 109 -----l~~s~dg~v~lWd-~~~~~~~~~---~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~---- 175 (357)
T 4g56_B 109 -----LVASDSGAVELWE-ILEKESLLV---NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK---- 175 (357)
T ss_dssp -----EEEETTSCEEEC---------CC---CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred -----EEEECCCEEEEee-ccccceeEE---EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE----
Confidence 7788999999999 543322111 111235899999999999999999999 89999999998654433
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
.+.+|...|++++|+|++..++++++.||.|++||+++++.. ..+.. ..|...+.+++|+|+
T Consensus 176 ----~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~----------~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 176 ----SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF----------CASDTIPTSVTWHPE 237 (357)
T ss_dssp ----EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC----------TTCCSCEEEEEECTT
T ss_pred ----EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeee----------ccccccccchhhhhc
Confidence 467799999999999998568999999999999999987642 22221 112367999999997
Q ss_pred -CCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC-CEEEEecCCCeEEEEecCC
Q 012535 353 -GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 353 -g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~ 429 (461)
+.+|++|+ |+.|++||+++ ++++..+.+|...+ .+++|+|++ ++|++|+.||.|+|||+++
T Consensus 238 ~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 238 KDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp STTEEEEEESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred ccceEEEeecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 46787876 69999999996 88888999888765 499999987 6899999999999999998
Q ss_pred CCccceeeccCCCCCcccccc
Q 012535 430 GSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~ 450 (461)
++.. ...+|..++.....+
T Consensus 302 ~~~~--~~~~H~~~V~~vafs 320 (357)
T 4g56_B 302 SEVF--RDLSHRDFVTGVAWS 320 (357)
T ss_dssp CEEE--EECCCSSCEEEEEEC
T ss_pred CcEe--EECCCCCCEEEEEEe
Confidence 8654 234677776655443
No 54
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=272.92 Aligned_cols=259 Identities=14% Similarity=0.234 Sum_probs=203.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|++++||+|+.||.|+||++.... .+....+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~~h~---------- 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE---------- 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCS----------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------------ceeeeEecCCC----------
Confidence 44799999999999999999999999999999987432 23556778888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|++++|+|..++.+|++++.||.|++||+.+++......
T Consensus 56 --~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------- 96 (379)
T 3jrp_A 56 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 96 (379)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-------------------------------------
Confidence 78999999965457899999999999999998765322111
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCc
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
...|...|.+++|+|+ +.+|+++ .|+.|++||++.....
T Consensus 97 --------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 97 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred --------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 2467788999999999 9999999 8999999999866433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeC-------------CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
... .+..|...|.+++|+| ++ .+|++++.||.|++||++.+.........+..
T Consensus 139 ~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------- 204 (379)
T 3jrp_A 139 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------- 204 (379)
T ss_dssp CEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECC-------
T ss_pred eeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEec-------
Confidence 222 3556889999999999 56 89999999999999999876532222333333
Q ss_pred ccccccccceeEEEEccC---CCEEEEec-CCeEEEEEccCCCCCee-EE-e--eccCccccccccccCCCccceeeEEE
Q 012535 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGPVA-TF-Q--VHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~---g~~l~s~~-d~~i~vwd~~~~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
|...|.+++|+|+ +++|++++ |+.|++||++....... .+ . .|... |++++|
T Consensus 205 -----h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~ 264 (379)
T 3jrp_A 205 -----HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASW 264 (379)
T ss_dssp -----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEE
T ss_pred -----ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEE
Confidence 4488999999999 89999976 69999999986222211 11 1 13222 359999
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCC
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+|++++|++++.||.|++|++..+.
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEETT
T ss_pred cCCCCEEEEecCCCcEEEEeCCCCC
Confidence 9999999999999999999998543
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-34 Score=274.95 Aligned_cols=301 Identities=13% Similarity=0.262 Sum_probs=228.4
Q ss_pred ccccccce-EEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V-~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+|.+.| +++.+ ++++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 162 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 162 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS---------
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC---------
Confidence 34677774 67776 46799999999999999998765 456778898
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceee--cCCCccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM--ANGGCGE 187 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~g~~~~ 187 (461)
..|.+++|+| ++ ++++|+.||+|++||+++++.......+ .+.+. +++|. +++..+
T Consensus 163 ---~~V~~l~~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h--------~~~v~-------~l~~~~~~~~~~l- 220 (464)
T 3v7d_B 163 ---GGVWALKYAH--GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVR-------CLDIVEYKNIKYI- 220 (464)
T ss_dssp ---SCEEEEEECS--TT-EEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEEEESSSCEEE-
T ss_pred ---cCEEEEEEcC--CC-EEEEEeCCCCEEEEECCCCcEEEEECCC--------CCccE-------EEEEecCCCCCEE-
Confidence 8899999984 44 9999999999999999998876665543 23344 66777 455664
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccce-----------------eeEeeecccccceeeEEeCCCCCEEEE
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG-----------------CRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
++++.|+.|++|| +.......... .... ..+|...|.++ +++++++++
T Consensus 221 -----------~s~s~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~--~~~~~~l~~ 285 (464)
T 3v7d_B 221 -----------VTGSRDNTLHVWK-LPKESSVPDHGEEHDYPLVFHTPEENPYFVGV-LRGHMASVRTV--SGHGNIVVS 285 (464)
T ss_dssp -----------EEEETTSCEEEEE-CCCCCCC------CCSSEEESCGGGCTTEEEE-ECCCSSCEEEE--EEETTEEEE
T ss_pred -----------EEEcCCCcEEEee-CCCCcccccccccCCcceEeeccCCCeEEEEE-ccCccceEEEE--cCCCCEEEE
Confidence 9999999999999 54332211100 1222 37788888776 677899999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
+ .|+.|++||+++.+... .+.+|...|.+++|+|++ .+|++|+.||.|++||+++++. +..+..|.
T Consensus 286 ~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~ 352 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTLQGHT 352 (464)
T ss_dssp EETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECCCS
T ss_pred EeCCCeEEEEECCCCcEEE--------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEEeCCC
Confidence 9 89999999998654433 356789999999999998 8999999999999999998875 45555544
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
..|.+++|+ +.+|++++ ||.|++||+.. ......+. +.... ..++|++
T Consensus 353 ------------~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~---------------~~~~~~~ 401 (464)
T 3v7d_B 353 ------------ALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNLS---------------AITTFYV 401 (464)
T ss_dssp ------------SCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTCC---------------CEEEEEE
T ss_pred ------------CcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCCc---------------cEEEEEe
Confidence 789999997 57888876 69999999985 44443332 33222 3789999
Q ss_pred CCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCccc
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLF 447 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 447 (461)
++++|++|+ ||.|++||+.+++.....+..+..++...
T Consensus 402 ~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v 439 (464)
T 3v7d_B 402 SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV 439 (464)
T ss_dssp CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEE
Confidence 999999998 89999999999987654455555554433
No 56
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=264.22 Aligned_cols=263 Identities=13% Similarity=0.233 Sum_probs=199.6
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
.++..+.+|.. ..|.+++|+ +++.+|++|+.|++|+||++.++.......... ...+.|.
T Consensus 6 ~~~~~~~~h~~-----------~~v~~l~~s--p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~-----~h~~~v~-- 65 (345)
T 3fm0_A 6 VLLGRVPAHPD-----------SRCWFLAWN--PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE-----GHQRTVR-- 65 (345)
T ss_dssp EEEEEECCSTT-----------SCEEEEEEC--TTSSCEEEEETTSCEEEEEEETTEEEEEEEECS-----SCSSCEE--
T ss_pred EEeeeecCCCC-----------CcEEEEEEC--CCCCEEEEEcCCCeEEEEEcCCCcceeeeeecc-----ccCCcEE--
Confidence 35667788872 279999999 568899999999999999998876433222110 0133455
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
+++|+|+|+.+ ++++.|+.+++|+ +.... ..+... +.+|...|.+++|+|++++|++
T Consensus 66 -----~~~~sp~g~~l------------~s~s~D~~v~iw~-~~~~~----~~~~~~-~~~h~~~v~~v~~sp~~~~l~s 122 (345)
T 3fm0_A 66 -----KVAWSPCGNYL------------ASASFDATTCIWK-KNQDD----FECVTT-LEGHENEVKSVAWAPSGNLLAT 122 (345)
T ss_dssp -----EEEECTTSSEE------------EEEETTSCEEEEE-ECCC-----EEEEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred -----EEEECCCCCEE------------EEEECCCcEEEEE-ccCCC----eEEEEE-ccCCCCCceEEEEeCCCCEEEE
Confidence 78999999985 9999999999999 43221 123333 3799999999999999999999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
+ .|+.|++||++.......+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.+... ...++.
T Consensus 123 ~s~D~~v~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~--~~~~~~--- 191 (345)
T 3fm0_A 123 CSRDKSVWVWEVDEEDEYECV-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV--CCATLE--- 191 (345)
T ss_dssp EETTSCEEEEEECTTSCEEEE-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE--EEEEEC---
T ss_pred EECCCeEEEEECCCCCCeEEE-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE--EEEEec---
Confidence 9 8999999999865433221 1356789999999999998 89999999999999998775421 023333
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCC--------------eeEEee-ccCccccccccc
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP--------------VATFQV-HEHLRPKLCDLY 393 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~--------------~~~~~~-~~~~~~~~~~~~ 393 (461)
+|...|.+++|+|+|++|++|+ |++|++||....+.. +..+.+ |..
T Consensus 192 ---------~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------- 253 (345)
T 3fm0_A 192 ---------GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR--------- 253 (345)
T ss_dssp ---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS---------
T ss_pred ---------CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC---------
Confidence 4458899999999999999976 699999997542221 111211 222
Q ss_pred cCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
.|++++|+|++..|++++.|+.|++|+...+.
T Consensus 254 ------~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 254 ------TIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp ------CEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ------cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 24699999999999999999999999998653
No 57
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-34 Score=306.03 Aligned_cols=311 Identities=15% Similarity=0.254 Sum_probs=232.0
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++ ....+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----------------------~~~~~~~h~---------- 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----------------------KLLDIKAHE---------- 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEeccCC----------
Confidence 44799999999999999999999999999999998765 445678888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.++++++.|++|++||+.+++.......+ .+.+. +++|+|++...
T Consensus 658 --~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~---- 714 (1249)
T 3sfz_A 658 --DEVLCCAFS--SDDSYIATCSADKKVKIWDSATGKLVHTYDEH--------SEQVN-------CCHFTNKSNHL---- 714 (1249)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSCC----
T ss_pred --CCEEEEEEe--cCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--------CCcEE-------EEEEecCCCce----
Confidence 789999999 56789999999999999999999877766544 23344 77898865421
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
.+++++.|+.|++|| +.. ..+...+ .+|...|.+++|+|++++|+++ .||.|++||+++......
T Consensus 715 ------~l~sg~~d~~v~vwd-~~~------~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~ 780 (1249)
T 3sfz_A 715 ------LLATGSNDFFLKLWD-LNQ------KECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780 (1249)
T ss_dssp ------EEEEEETTSCEEEEE-TTS------SSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred ------EEEEEeCCCeEEEEE-CCC------cchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence 248999999999999 432 2233343 7899999999999999999999 899999999976532211
Q ss_pred ee------------------------------------------ccCC-----CCCCCCCcceEEEEEeCCCCCeEEEEe
Q 012535 270 IV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSS 302 (461)
Q Consensus 270 ~~------------------------------------------~~~~-----~~~~~~~~~v~~v~~~p~~~~~l~~~~ 302 (461)
+. +... ....+|...|.+++|+|++ .++++++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~ 859 (1249)
T 3sfz_A 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL 859 (1249)
T ss_dssp EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEEC
T ss_pred ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEe
Confidence 10 0000 0012577889999999998 8999999
Q ss_pred cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccC----------
Q 012535 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM---------- 371 (461)
Q Consensus 303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~---------- 371 (461)
.||.|++||+.++.. +..+..| ...|.+++|+|+|++|++++ |+.|++||+..
T Consensus 860 ~dg~v~vwd~~~~~~----~~~~~~h------------~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLK----VADCRGH------------LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp SSSCEEEEETTTTEE----EEEECCC------------SSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred CCCeEEEEEcCCCce----eeecCCC------------ccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 999999999988764 3344433 36677777777777777755 47777777531
Q ss_pred --------------------------------------------------------------------CCCCeeEEeecc
Q 012535 372 --------------------------------------------------------------------DSGPVATFQVHE 383 (461)
Q Consensus 372 --------------------------------------------------------------------~~~~~~~~~~~~ 383 (461)
.++.+..+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 022222222222
Q ss_pred CccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCc
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMS 445 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 445 (461)
. .|.+++|+|++++|++++.||.|++||+.+++.. ....+...+.
T Consensus 1004 ~---------------~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~v~ 1048 (1249)
T 3sfz_A 1004 K---------------AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVK 1048 (1249)
T ss_dssp S---------------CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE--CCBCCSSCEE
T ss_pred C---------------ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE--EEecCCCcEE
Confidence 2 3459999999999999999999999999987544 2334444433
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5e-34 Score=267.40 Aligned_cols=286 Identities=14% Similarity=0.158 Sum_probs=217.1
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
..+....|++++++||+|+.||.|++||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 555666889999999999999999999987654 344567888 789
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
++++|+ +++.+|++++.|++|++||+.+++.......+ .+.+. +++|+|+++.+
T Consensus 143 ~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l--------- 196 (420)
T 3vl1_A 143 TKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTLIGH--------RATVT-------DIAIIDRGRNV--------- 196 (420)
T ss_dssp EEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEEECC--------SSCEE-------EEEEETTTTEE---------
T ss_pred EEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC--------CCcEE-------EEEEcCCCCEE---------
Confidence 999999 56779999999999999999988766655443 33455 78999999985
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeee-----------------------cccccceeeEEeCCCCCEEEEe-
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----------------------HAHDYHINSISNNSDGETFISA- 251 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~v~~i~~~~~~~~l~~~- 251 (461)
++++.|+.|++|| +... ++...+. ..+...+.+++|+|++++|+++
T Consensus 197 ---~s~~~d~~v~iwd-~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 197 ---LSASLDGTIRLWE-CGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp ---EEEETTSCEEEEE-TTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred ---EEEcCCCcEEEeE-CCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 9999999999999 4322 1222210 1134567777889999999999
Q ss_pred CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
.||.|++||+++.+....+ ...|...|.+++|+|++..+|++|+.||.|++||++++... +..+..+
T Consensus 267 ~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~--- 333 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQL-------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP---VGEFLIN--- 333 (420)
T ss_dssp TTSCEEEEETTTCCEEEEE-------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEEES---
T ss_pred CCCeEEEEECCCCceeEEc-------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc---hhhhhcc---
Confidence 8999999999876654432 34578899999999999339999999999999999986531 3344432
Q ss_pred CccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCC--------eeEEeeccCccccccccccCCCcccee
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP--------VATFQVHEHLRPKLCDLYENDSIFDKF 402 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (461)
|...|.++.+ +++++|++++ |+.|++||+.....+ ...+..|... |.
T Consensus 334 --------~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~ 389 (420)
T 3vl1_A 334 --------EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA---------------VS 389 (420)
T ss_dssp --------TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC---------------CC
T ss_pred --------CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc---------------eE
Confidence 2256888855 5788999876 699999999853222 1122333333 34
Q ss_pred eEEEecCCC---EEEEecCCCeEEEEecCC
Q 012535 403 ECCLSGDGG---RVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 403 ~~~~s~~~~---~l~s~~~dg~i~iw~~~~ 429 (461)
+++|+|+++ .|++++.+|.+.+|++++
T Consensus 390 ~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 390 QFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999999 777778889999999864
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.4e-35 Score=265.99 Aligned_cols=291 Identities=11% Similarity=0.113 Sum_probs=223.5
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.+.+.|.+++|+|||++++++..++.+.+|...... ......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------ 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------ 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence 467889999999999999999877776665433211 112233676
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEee-eecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFD-WNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|.+++|+ +++.++++++ ||.|++|++.++....... .... .....+. +++|+|+++.+
T Consensus 52 ~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~----~~~~~v~-------~~~~~~~~~~l----- 112 (337)
T 1gxr_A 52 EVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL----NRDNYIR-------SCKLLPDGCTL----- 112 (337)
T ss_dssp SCCCEEEEC--SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECS----CTTSBEE-------EEEECTTSSEE-----
T ss_pred CceEEEEEe--cCCcEEEEcC-CCeEEEEECCCCCceeeeeccccc----CCCCcEE-------EEEEcCCCCEE-----
Confidence 789999999 5677999988 9999999998765322211 1100 0123344 78999999885
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
++++.++.|++|| +..... ..... ...|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 113 -------~~~~~d~~i~~~d-~~~~~~----~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-- 177 (337)
T 1gxr_A 113 -------IVGGEASTLSIWD-LAAPTP----RIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-- 177 (337)
T ss_dssp -------EEEESSSEEEEEE-CCCC------EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred -------EEEcCCCcEEEEE-CCCCCc----ceeee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee--
Confidence 9999999999999 433221 12222 36788999999999999999999 89999999998654332
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.+..|...+.+++|+|++ .+|++++.||.|++||+++++. +..+.. ...+.+++|+
T Consensus 178 ------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~~~-------------~~~v~~~~~s 233 (337)
T 1gxr_A 178 ------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQ----LQQHDF-------------TSQIFSLGYC 233 (337)
T ss_dssp ------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEEC-------------SSCEEEEEEC
T ss_pred ------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCce----EeeecC-------------CCceEEEEEC
Confidence 355688999999999998 9999999999999999998765 233222 2679999999
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 351 ~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
|++++|++++ ++.|++||+.. .+ ...+..|...+ .+++|+|++++|++++.||.|++||+.+
T Consensus 234 ~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 234 PTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 9999999986 59999999985 33 44566666554 5999999999999999999999999998
Q ss_pred CCcc
Q 012535 430 GSAE 433 (461)
Q Consensus 430 ~~~~ 433 (461)
++..
T Consensus 297 ~~~~ 300 (337)
T 1gxr_A 297 GASI 300 (337)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 8655
No 60
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-34 Score=261.74 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=207.0
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
.+|.+.|++++|+|++++||+|+.||.|+|||+.++.. ..+....+.+|.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~----------- 57 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD----------- 57 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS-----------
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC-----------
Confidence 47999999999999999999999999999999986542 223455677888
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|.+++|+|..++.+|++++.||+|++||+..+..... +
T Consensus 58 -~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~-------------------------------~-------- 97 (351)
T 3f3f_A 58 -SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS-------------------------------G-------- 97 (351)
T ss_dssp -SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS-------------------------------S--------
T ss_pred -CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc-------------------------------c--------
Confidence 789999999643678999999999999999976542100 0
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCce
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
........ ..+|...|.+++|+|+ +++|+++ .|+.|++||+++.+...
T Consensus 98 ----------------------------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 98 ----------------------------RRWNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp ----------------------------CSEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred ----------------------------cCcceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 00011111 2678899999999999 9999998 89999999998665432
Q ss_pred eee-----ccCCCCCCCCCcceEEEEEeCC---CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 269 NIV-----DVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 269 ~~~-----~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
.+. .........+...+.+++|+|+ + .+|++++.|+.+.+|+...+... .+..+. +|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~------------~h 213 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAKLP------------GH 213 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEECC------------CC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeeecC------------CC
Confidence 211 0001122357888999999997 6 89999999999988887766431 123333 34
Q ss_pred ccceeEEEEccCC----CEEEEec-CCeEEEEEccCCC------------------------------------------
Q 012535 341 IASISDIKFARNG----RHILSRD-YMTLKLWDINMDS------------------------------------------ 373 (461)
Q Consensus 341 ~~~v~~l~~s~~g----~~l~s~~-d~~i~vwd~~~~~------------------------------------------ 373 (461)
...|.+++|+|++ ++|++|+ |+.|++||++...
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCS
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc
Confidence 4889999999998 7898876 6999999998521
Q ss_pred ---CCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 374 ---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 374 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+.+..+.+|... |.+++|+|++++|++|+.||.|++|++.+++..
T Consensus 294 ~~~~~~~~~~~h~~~---------------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 294 LQVELLSEHDDHNGE---------------VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EEEEEEEEECTTSSC---------------EEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred ccccEEEEEeccccc---------------EEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 233334444443 469999999999999999999999999988654
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-35 Score=295.07 Aligned_cols=212 Identities=14% Similarity=0.118 Sum_probs=161.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+. ... ..|.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~~-~~~~---------- 58 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VIK-LEDR---------- 58 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EEE-CSSC----------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EEE-cCCC----------
Confidence 457899999999999999999999999999999765431 111 2354
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+| +.+|++++.|++|++||+.+++....... .+.+. +++|+|++..+
T Consensus 59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~---------~~~V~-------~v~~sp~g~~l---- 113 (902)
T 2oaj_A 59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFV---------PGKIT-------SIDTDASLDWM---- 113 (902)
T ss_dssp --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEEC---------SSCEE-------EEECCTTCSEE----
T ss_pred --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcC---------CCCEE-------EEEECCCCCEE----
Confidence 6799999995 55999999999999999998876655532 22344 78999999986
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeE-------eeecccccceeeEEeCCC-CCEEEEe-CCCeEEEEEc
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR-------IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNL 261 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~ 261 (461)
++|+.||.|++|| +...... .... ....+|...|.+++|+|+ +..+++| .|+.| +||+
T Consensus 114 --------~sgs~dg~V~lwd-~~~~~~~---~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 114 --------LIGLQNGSMIVYD-IDRDQLS---SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp --------EEEETTSCEEEEE-TTTTEEE---EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred --------EEEcCCCcEEEEE-CCCCccc---cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 9999999999999 5332211 0000 113678999999999996 4678888 89999 9999
Q ss_pred cCCCCceeeeccC-----C------CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 262 EISNQSFNIVDVK-----P------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 262 ~~~~~~~~~~~~~-----~------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
++.+.... +... + .....|...|++++|+|++ .+|++|+.||.|++||+++++
T Consensus 181 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 181 VENEIKQS-FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp TTTEEEEE-ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCC
T ss_pred CCCceEEE-EecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence 86543322 2111 0 0123356789999999998 999999999999999997654
No 62
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=292.40 Aligned_cols=380 Identities=12% Similarity=0.049 Sum_probs=232.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCC----------CcccccccccccccCCccc-c--------
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG----------GQRRDLEMMDYSMSRHPEF-R-------- 91 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~-------- 91 (461)
.+.|.+.|++++|+|++++|++|+.||.|++||+.+++... .....+.....++.++|.. .
T Consensus 94 ~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 94 TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 34577899999999999999999999999999998765310 0001122334456666631 1
Q ss_pred -----------ccccccCCCcchhh------ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeee
Q 012535 92 -----------YKTEFQSHEPEFDY------LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (461)
Q Consensus 92 -----------~~~~~~~h~~~~~~------~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 154 (461)
....+..|.+.... .....+...|++++|+ +++.+|++++.||+|++||+++++.......
T Consensus 174 g~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs--pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l 251 (902)
T 2oaj_A 174 VTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH--PNSLHIITIHEDNSLVFWDANSGHMIMARTV 251 (902)
T ss_dssp CEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--TTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred CcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence 11122222000000 0000122679999999 5688999999999999999998876543221
Q ss_pred e---cCCC-cc------CCCCCccccccccCcceeec----CCC---------------cc-------------------
Q 012535 155 N---VHPE-KA------AGNGPIFGSHVSAIPKSYMA----NGG---------------CG------------------- 186 (461)
Q Consensus 155 ~---~~~~-~~------~~~~~v~~~~~~~~~~~~~~----~g~---------------~~------------------- 186 (461)
. .+.. .. ...+.|. +++|++ ++. .+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~V~-------~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~ 324 (902)
T 2oaj_A 252 FETEINVPQPDYIRDSSTNAAKIS-------KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGM 324 (902)
T ss_dssp SCSCTTSCCTTCCCCCSSCCCEEE-------EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHH
T ss_pred cccccCCCCCcCCCCCccccCCee-------EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhh
Confidence 1 0100 00 0011222 223321 100 00
Q ss_pred ----------------------ccccc---------CCCCCccccccCCCcEEeeeeecccCcccc--------------
Q 012535 187 ----------------------ERNFG---------CASNDSSFPPGGVSSLRLPVVVTSQETNLV-------------- 221 (461)
Q Consensus 187 ----------------------~~~~~---------~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-------------- 221 (461)
.+... ..+...+++++.|+.|++|+ +........
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~-~~~g~~~~~~~~~~~~l~~~~~~ 403 (902)
T 2oaj_A 325 KNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML-YPSGIFTDKASLFPQNLSWLRPL 403 (902)
T ss_dssp HHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE-TTTCCEECCGGGSCGGGTTBTTB
T ss_pred hhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE-CCCCCcccccccCCCcccccCCC
Confidence 00000 01122456777889999999 532110000
Q ss_pred ---------------------ceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce-eeeccC--CC
Q 012535 222 ---------------------AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF-NIVDVK--PA 276 (461)
Q Consensus 222 ---------------------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-~~~~~~--~~ 276 (461)
.... ..+.+|...+.+++|+|++++|++| .|++|++||+.++.... ..+... ..
T Consensus 404 v~~~~~s~~~~~~w~~~~~~~~~~~-~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 404 ATTSMAASVPNKLWLGALSAAQNKD-YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp EEEEEEEEEEHHHHHHHHHTTBCCC-CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred eeEEEEEEcCHHHHHHHHhcccCCC-CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 0000 1135677778888999999999999 89999999998653210 000000 00
Q ss_pred CCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccc------cccc-------c----------ccccCC--
Q 012535 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------HSKL-------F----------EEQEAP-- 331 (461)
Q Consensus 277 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~-------~----------~~~~~~-- 331 (461)
...+|...|++++|+|++ ++||+|+.||+|+|||+.+++.... .... + .....+
T Consensus 483 ~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp TTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred cCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 012688999999999999 9999999999999999986631000 0000 0 000000
Q ss_pred ----CccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCee-----EEe-eccCccccccccccCCCccc
Q 012535 332 ----GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA-----TFQ-VHEHLRPKLCDLYENDSIFD 400 (461)
Q Consensus 332 ----~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~ 400 (461)
.....+.+|.+.|++++|+||| +||+|+ |++|+|||++. ...+. .+. +|...+
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~-~~~~~~~~~~~~~~gh~~~V-------------- 625 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG-PAIIYMENIREISGAQSACV-------------- 625 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT-TEEEEEEEGGGTCSSCCCCE--------------
T ss_pred CCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC-CeEEEEeehhHhccccccce--------------
Confidence 1134566788999999999999 999987 59999999874 43332 122 455444
Q ss_pred eeeEEEe-----cCC---CEEEEecCCCeEEEEec---CCCCccceeeccC
Q 012535 401 KFECCLS-----GDG---GRVATGSYSNLFRVFGC---SEGSAESTTLEAS 440 (461)
Q Consensus 401 v~~~~~s-----~~~---~~l~s~~~dg~i~iw~~---~~~~~~~~~~~~~ 440 (461)
++++|+ ||| ++|++|+.|++|++||+ .+|+.. ..+.+|
T Consensus 626 -~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~-~~~~~~ 674 (902)
T 2oaj_A 626 -TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD-VQLMDI 674 (902)
T ss_dssp -EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE-EEEEEE
T ss_pred -EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE-EEecCc
Confidence 599999 885 89999999999999999 666544 455554
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.1e-34 Score=290.58 Aligned_cols=289 Identities=15% Similarity=0.198 Sum_probs=234.8
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------------------~~~~~~~~~----------- 55 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------------------EVRSIQVTE----------- 55 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS-----------
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEEecCC-----------
Confidence 4699999999999999999999999999999998764 445677888
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..|.+++|+| ++.+|++++.||.|++||+.+++.......+ .+.+. +++|+|+++.+
T Consensus 56 -~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--------~~~v~-------~~~~s~~~~~l----- 112 (814)
T 3mkq_A 56 -TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH--------PDYIR-------SIAVHPTKPYV----- 112 (814)
T ss_dssp -SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSEE-----
T ss_pred -CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEecC--------CCCEE-------EEEEeCCCCEE-----
Confidence 7899999995 5779999999999999999998877666543 23355 78999999985
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
++++.|+.|++|+ +... ...... ..+|...|.+++|+| +++.|+++ .||.|++||++.......
T Consensus 113 -------~~~~~dg~i~vw~-~~~~-----~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 178 (814)
T 3mkq_A 113 -------LSGSDDLTVKLWN-WENN-----WALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178 (814)
T ss_dssp -------EEEETTSEEEEEE-GGGT-----SEEEEE-EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE
T ss_pred -------EEEcCCCEEEEEE-CCCC-----ceEEEE-EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE
Confidence 9999999999999 4321 122233 378999999999999 78899998 899999999986655443
Q ss_pred eeccCCCCCCCCCcceEEEEEeC--CCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
+ ...+...+.+++|+| ++ .+|++++.||.|++||++++.. +..+..+. ..|.++
T Consensus 179 ~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~------------~~v~~~ 234 (814)
T 3mkq_A 179 L-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEGHM------------SNVSFA 234 (814)
T ss_dssp E-------ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEE----EEEEECCS------------SCEEEE
T ss_pred E-------ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEEcCCC------------CCEEEE
Confidence 2 223458899999999 87 8999999999999999988764 44444443 789999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE-EEEecCCCeEEEE
Q 012535 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 425 (461)
Q Consensus 348 ~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iw 425 (461)
+|+|++++|++++ ||.|++||+.+ ++.+..+..|...+ ++++|+|++.. +++++.|+.+.+|
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLERS---------------WCIATHPTGRKNYIASGFDNGFTVL 298 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTT-CSEEEEECCSSSSE---------------EEEEECTTCGGGEEEEEETTEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeecCCCcE---------------EEEEEccCCCceEEEEEeCCCEEEE
Confidence 9999999999977 69999999986 78888888776654 59999999873 2444556778999
Q ss_pred ecCCCC
Q 012535 426 GCSEGS 431 (461)
Q Consensus 426 ~~~~~~ 431 (461)
++..+.
T Consensus 299 ~~~~~~ 304 (814)
T 3mkq_A 299 SLGNDE 304 (814)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 987654
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.5e-34 Score=302.99 Aligned_cols=320 Identities=15% Similarity=0.237 Sum_probs=243.3
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------------------~~~~~~~~~---------- 699 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----------------------LVHTYDEHS---------- 699 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCS----------
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------------------eEEEEcCCC----------
Confidence 34699999999999999999999999999999998765 456678888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+|..++.++++++.|+.|++||+.+++.......+ .+.+. +++|+|+++.+
T Consensus 700 --~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--------~~~v~-------~~~~sp~~~~l---- 758 (1249)
T 3sfz_A 700 --EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--------TNSVN-------HCRFSPDDELL---- 758 (1249)
T ss_dssp --SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--------SSCEE-------EEEECSSTTEE----
T ss_pred --CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--------CCCEE-------EEEEecCCCEE----
Confidence 7899999997667779999999999999999998877665543 23344 67888888764
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCcc---------------------------------------------------
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETN--------------------------------------------------- 219 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--------------------------------------------------- 219 (461)
++++.||.|++|| +......
T Consensus 759 --------~s~s~dg~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 759 --------ASCSADGTLRLWD-VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp --------EEEESSSEEEEEE-GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred --------EEEECCCeEEEEe-CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 6777777777776 3221000
Q ss_pred ----------------------------------------ccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEE
Q 012535 220 ----------------------------------------LVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL 258 (461)
Q Consensus 220 ----------------------------------------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~i 258 (461)
........ ..+|...|.+++|+|+++.|+++ .|+.|++
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~h~~~v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee-cCCCccceEEEEECCCCCEEEEEeCCCeEEE
Confidence 00111222 26788889999999999999998 8999999
Q ss_pred EEccCCCC-------------------------------------------------------------------ceeee
Q 012535 259 WNLEISNQ-------------------------------------------------------------------SFNIV 271 (461)
Q Consensus 259 wd~~~~~~-------------------------------------------------------------------~~~~~ 271 (461)
|++..... .+.++
T Consensus 909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988 (1249)
T ss_dssp EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence 99652100 01111
Q ss_pred ccCC----CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 272 DVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 272 ~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
+... ..+.+|...|++++|+|++ ++|++++.||.|++||+.++... .+. +|...|.++
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~-----~~~------------~~~~~v~~~ 1050 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV-----FLQ------------AHQETVKDF 1050 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE-----CCB------------CCSSCEEEE
T ss_pred EcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE-----EEe------------cCCCcEEEE
Confidence 1111 1245678888899999988 88999999999999998887641 122 344789999
Q ss_pred EEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 348 ~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
.|+|++.+++.+.|+.|++||+.+ ++.+..+.+|...+ .+++|+|++++|++++.||.|++||+
T Consensus 1051 ~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~d~~~l~s~s~d~~v~iwd~ 1114 (1249)
T 3sfz_A 1051 RLLQDSRLLSWSFDGTVKVWNVIT-GRIERDFTCHQGTV---------------LSCAISSDATKFSSTSADKTAKIWSF 1114 (1249)
T ss_dssp EECSSSEEEEEESSSEEEEEETTT-TCCCEEEECCSSCC---------------CCEEECSSSSSCEEECCSSCCCEECS
T ss_pred EEcCCCcEEEEECCCcEEEEECCC-CceeEEEcccCCcE---------------EEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 999988766666689999999996 88899999998776 49999999999999999999999999
Q ss_pred CCCCccceeeccCCCCCccccc
Q 012535 428 SEGSAESTTLEASKNPMSLFLH 449 (461)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~ 449 (461)
.+++.. ..+..|..++.....
T Consensus 1115 ~~~~~~-~~l~~h~~~v~~~~~ 1135 (1249)
T 3sfz_A 1115 DLLSPL-HELKGHNGCVRCSAF 1135 (1249)
T ss_dssp SSSSCS-BCCCCCSSCEEEEEE
T ss_pred CCccee-eeeccCCCcEEEEEE
Confidence 988755 566677666554433
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=259.46 Aligned_cols=265 Identities=14% Similarity=0.199 Sum_probs=189.7
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcccc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (461)
++...+.+|. ..|.+++|+ ++ +|++++.|++|++|++..+........... ...+.|.
T Consensus 5 ~~~~~~~~h~------------~~v~~~~~s--~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~----~h~~~v~-- 62 (330)
T 2hes_X 5 NLIKSLKLYK------------EKIWSFDFS--QG--ILATGSTDRKIKLVSVKYDDFTLIDVLDET----AHKKAIR-- 62 (330)
T ss_dssp EEEEEEECCS------------SCEEEEEEE--TT--EEEEEESSSCEEEEECSSSCCEEEEEECTT----CCCSCEE--
T ss_pred ccceeeccCC------------CceeeeccC--CC--EEEEEcCCCEEEEEEecCCCeEEEEEEecC----CccCCEE--
Confidence 3566788998 889999998 43 999999999999999987643222211100 0133455
Q ss_pred ccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCcc-ccceeeEeeecccccceeeEEeCCCCCEEE
Q 012535 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-LVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (461)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (461)
+++|+|+++.+ ++++.|+.|++|+ +...... ....+... +.+|...|.+++|+|++++|+
T Consensus 63 -----~v~~sp~~~~l------------as~s~D~~v~iw~-~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~g~~la 123 (330)
T 2hes_X 63 -----SVAWRPHTSLL------------AAGSFDSTVSIWA-KEESADRTFEMDLLAI-IEGHENEVKGVAWSNDGYYLA 123 (330)
T ss_dssp -----EEEECTTSSEE------------EEEETTSCEEEEE-C-------CCCEEEEE-EC----CEEEEEECTTSCEEE
T ss_pred -----EEEECCCCCEE------------EEEeCCCcEEEEE-cccCcCccccceeEEE-EcCCCCcEEEEEECCCCCEEE
Confidence 78999999985 9999999999999 4321111 11233334 379999999999999999999
Q ss_pred Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+| .|+.|++||++......... ..+.+|...|.+++|+|++ .+|++|+.|++|++||.+.+.. ..+..+.+
T Consensus 124 s~s~D~~v~iwd~~~~~~~~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~- 195 (330)
T 2hes_X 124 TCSRDKSVWIWETDESGEEYECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW--ECVAVLNG- 195 (330)
T ss_dssp EEETTSCEEEEECCTTCCCCEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE--EEEEEECC-
T ss_pred EEeCCCEEEEEeccCCCCCeEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe--eEEEEccC-
Confidence 99 89999999995433221111 1467799999999999998 9999999999999999876521 11334444
Q ss_pred cCCCccccccccccceeEEEEccC--CCEEEEec-CCeEEEEEccCCC-------CCeeEEee-ccCccccccccccCCC
Q 012535 329 EAPGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDS-------GPVATFQV-HEHLRPKLCDLYENDS 397 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~--g~~l~s~~-d~~i~vwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~ 397 (461)
|...|.+++|+|+ +.+|++|+ |++|++||+.... .....+.. |...
T Consensus 196 -----------h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~------------ 252 (330)
T 2hes_X 196 -----------HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ------------ 252 (330)
T ss_dssp -----------CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC------------
T ss_pred -----------CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc------------
Confidence 4488999999998 77888876 6999999997411 11222222 4433
Q ss_pred ccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 398 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 398 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
|++++|++++ +|++++.||.|+||+..+++
T Consensus 253 ---v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 253 ---VYNVAWGFNG-LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp ---EEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred ---eEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence 3599999665 89999999999999998764
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-34 Score=280.00 Aligned_cols=313 Identities=12% Similarity=0.181 Sum_probs=238.9
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|.+.|++++|+|+|++||+++ ++.|+||++.++.. ..+....+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~----------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG----------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT-----------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC-----------
Confidence 46889999999999999999998 88999999986510 012456788898
Q ss_pred ccc-eEEEEEeecCCCcEEEEEeCCCeEEEEEccCC------ceeEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 112 EEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 112 ~~~-v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
.. |++++|+|..++.+|++++.||+|++||+.++ ..........+ .+.+. +++|+|+++
T Consensus 64 -~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v~-------~~~~s~~~~ 129 (615)
T 1pgu_A 64 -SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPIS-------DISWDFEGR 129 (615)
T ss_dssp -TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCEE-------EEEECTTSS
T ss_pred -CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccEE-------EEEEeCCCC
Confidence 88 99999995226889999999999999999755 22222222211 23344 789999999
Q ss_pred cccccccCCCCCccccccCC----CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEE
Q 012535 185 CGERNFGCASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINL 258 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~i 258 (461)
.+ ++++.+ +.|.+|| . . ..... +.+|...|.+++|+|+++ .++++ .|+.|++
T Consensus 130 ~l------------~~~~~~~~~~~~v~~~d-~---~-----~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 130 RL------------CVVGEGRDNFGVFISWD-S---G-----NSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp EE------------EEEECCSSCSEEEEETT-T---C-----CEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred EE------------EEeccCCCCccEEEEEE-C---C-----Cccee-eecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 85 777776 6888887 2 1 12333 378999999999999998 78888 8999999
Q ss_pred EEccCCCCceeeeccCCCCCCCCCc---ceEEEEEeCC-CCCeEEEEecCCeEEEEECCCccccccccccc-ccccCCCc
Q 012535 259 WNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF-EEQEAPGT 333 (461)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~ 333 (461)
||+++.+... .+.+|.. .|.+++|+|+ + ++|++++.||.|++||+++++. +..+ ..
T Consensus 188 wd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~------ 248 (615)
T 1pgu_A 188 YQGPPFKFSA--------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEF----LKYIEDD------ 248 (615)
T ss_dssp EETTTBEEEE--------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCE----EEECCBT------
T ss_pred EeCCCcceee--------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCE----eEEeccc------
Confidence 9988654332 3556777 8999999999 8 9999999999999999988765 3444 20
Q ss_pred cccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 334 RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 334 ~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
..+|...|.+++|+ ++++|++++ |+.|++||+.+ ++.+..+..+...... .+..+.|+ ++++
T Consensus 249 ---~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~ 311 (615)
T 1pgu_A 249 ---QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGN-----------QQVGVVAT-GNGR 311 (615)
T ss_dssp ---TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGG-----------CEEEEEEE-ETTE
T ss_pred ---ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccC-----------ceeEEEeC-CCCe
Confidence 00244789999999 999999976 69999999996 7888888776422210 12477775 8999
Q ss_pred EEEecCCCeEEEEecCCCCccceeeccCCCCCcccc
Q 012535 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFL 448 (461)
Q Consensus 413 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 448 (461)
+++++.||.|++||+.+++.. ..+..|..++....
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVL-KTISGHNKGITALT 346 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEE-EEECCCSSCEEEEE
T ss_pred EEEEECCCCEEEEECCCCcEE-EEEeCCCCCEEEEE
Confidence 999999999999999986544 56667766655443
No 67
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-35 Score=276.24 Aligned_cols=298 Identities=8% Similarity=0.021 Sum_probs=203.9
Q ss_pred ccccceEEEEEcCC------CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhc
Q 012535 33 QEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (461)
Q Consensus 33 ~h~~~V~~~~~s~~------g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (461)
.|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++........ ........+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~------------~~~~p~~~l~~h~------ 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK------------MCEKPSLTLSLAD------ 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE------------CCCSCSEEECCTT------
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce------------eecCceEEEEcCC------
Confidence 46789999999996 57999999999999999976542100000 0001223567787
Q ss_pred cccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce-eEEeeeecCCCccCCCCCccccccccCcc--eeecCC
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPK--SYMANG 183 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~g 183 (461)
..|++++|+| + ..|++|+.||+|++||++++.. ......+ .+.|. ++ +|+|+|
T Consensus 267 ------~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H--------~~~V~-------sv~~~~s~~g 322 (524)
T 2j04_B 267 ------SLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVH--------DSYIL-------SVSTAYSDFE 322 (524)
T ss_dssp ------TCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECS--------SSCEE-------EEEEECCTTS
T ss_pred ------CCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecc--------cccEE-------EEEEEcCCCC
Confidence 7899999984 2 4899999999999999987632 2223332 23344 55 567777
Q ss_pred -CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccc--cceeeEEeCCCCCEEEEe-CCCeEEEE
Q 012535 184 -GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD--YHINSISNNSDGETFISA-DDLRINLW 259 (461)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~-~d~~i~iw 259 (461)
.. +++++.|+.|++|| +..... ...+ .+|. ..|.+++|+|+++.|+++ .|++|++|
T Consensus 323 ~~~------------laS~S~D~tvklWD-~~~~~~------~~~~-~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw 382 (524)
T 2j04_B 323 DTV------------VSTVAVDGYFYIFN-PKDIAT------TKTT-VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV 382 (524)
T ss_dssp CCE------------EEEEETTSEEEEEC-GGGHHH------HCEE-EEECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred CeE------------EEEeccCCeEEEEE-CCCCCc------cccc-ccccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence 55 49999999999999 543221 1111 3443 358899999999999998 89999999
Q ss_pred EccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccc
Q 012535 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
|+++..... .+.+|...|++|+|+|++ .+|++|+.||+|++||+.... +..+..... ..
T Consensus 383 d~~~~~~~~--------~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~-----~~~~~~~~~-------~~ 441 (524)
T 2j04_B 383 PSRAAFAVH--------PLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRL-----LHGIKNSSA-------TQ 441 (524)
T ss_dssp ETTCTTCCE--------EEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSST-----TTCC-------------C
T ss_pred ECcccccce--------eeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhh-----ccccccCcc-------ce
Confidence 998655433 356799999999999999 899999999999999986542 222211000 00
Q ss_pred cccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC---EEEEe
Q 012535 340 IIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG---RVATG 416 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~ 416 (461)
+...+.+++|+|+|+.+.. .+ ...+|+....+..+..+.+|...+ ++++|+|++. +||+|
T Consensus 442 ~~~~v~~v~~sp~g~~~~~-~~-~~~~~~~~~~g~~~~~l~gh~~~V---------------~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 442 KSLRLWKWDYSIKDDKYRI-DS-SYEVYPLTVNDVSKAKIDAHGINI---------------TCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp CCCEEEECBCCSSSCEEEE-CC-CCCCCC-------------CCCSC---------------CCEEECCSTTTTTEEEEE
T ss_pred eeeEEEEeccCCCCCeEEc-cC-CceecccccCCcceeeecCCCceE---------------EEEECCCCCCccHHHHhh
Confidence 1124789999999986533 22 233444332266778888898776 4999999964 99999
Q ss_pred cCCCeEEEEecCCC
Q 012535 417 SYSNLFRVFGCSEG 430 (461)
Q Consensus 417 ~~dg~i~iw~~~~~ 430 (461)
+.||.|+||++...
T Consensus 505 ~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 505 NSAGLLTLEYLSLE 518 (524)
T ss_dssp CTTSEEEEEECSCC
T ss_pred ccCceEEEEEcccc
Confidence 99999999998743
No 68
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.6e-34 Score=260.67 Aligned_cols=300 Identities=11% Similarity=0.078 Sum_probs=222.6
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.|.+.|++++|+|++++|++|+.||.|+||++.++... .....+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~------------ 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK------------ 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC------------
Confidence 69999999999999999999999999999999865410 0123344676
Q ss_pred cceEEEEEeecCCCc-EEEEEeCCCeEEEEEc-cCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~-~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+| ++. +|++++.||.|++|++ .+++....... ...+.+. +++|+| +..+
T Consensus 57 ~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------~~~~~v~-------~l~~~~-~~~l---- 115 (342)
T 1yfq_A 57 HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQALTNN-------EANLGIC-------RICKYG-DDKL---- 115 (342)
T ss_dssp SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEECBSC-------CCCSCEE-------EEEEET-TTEE----
T ss_pred CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEecccc-------CCCCceE-------EEEeCC-CCEE----
Confidence 7799999995 588 9999999999999999 87765322110 0123344 788999 7764
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCcccc---ceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccC-CC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLV---AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI-SN 265 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~-~~ 265 (461)
++++.|+.|++|| +........ ..+... ..|...|.+++|+|++ ++++ .|+.|++||+++ ..
T Consensus 116 --------~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 116 --------IAASWDGLIEVID-PRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp --------EEEETTSEEEEEC-HHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred --------EEEcCCCeEEEEc-ccccccccccccCCeeeE--EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 9999999999999 543111000 111222 2378899999999988 6666 899999999986 44
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeC-CCCCeEEEEecCCeEEEEECCCc--ccccccccccccccCCCcccccccccc
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
..... ....+...+.+++|+| ++ .+|++++.||.|++||++.. .........+..+.... .-.+|..
T Consensus 183 ~~~~~------~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 252 (342)
T 1yfq_A 183 DNGTI------EESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL---KDTNLAY 252 (342)
T ss_dssp CCCEE------EECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT---TCCSSCC
T ss_pred cccee------eecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc---cccccce
Confidence 33222 2335778899999999 98 89999999999999999876 11111144555543210 0123446
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec-cCccccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
.|.+++|+|++++|++++ ||.|++||+.+ ++.+..+.+| ...+ .+++ |++++|++|+.||
T Consensus 253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v---------------~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSV---------------VKIA--CSDNILCLATSDD 314 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSSEE---------------EEEE--ECSSEEEEEEECT
T ss_pred eEEEEEEcCCCCEEEEecCCceEEEEcCcc-HhHhhhhhcccCCCc---------------eEec--CCCCeEEEEecCC
Confidence 899999999999999976 69999999996 7888888887 6654 4777 9999999999999
Q ss_pred e-EEEEe
Q 012535 421 L-FRVFG 426 (461)
Q Consensus 421 ~-i~iw~ 426 (461)
. .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 54444
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.3e-34 Score=279.58 Aligned_cols=305 Identities=11% Similarity=0.133 Sum_probs=214.2
Q ss_pred ccccccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...|...|++++|+|+++ +|++|+.||.|++||+.+++ ....+.+|.
T Consensus 156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----------------------~~~~~~~~~--------- 203 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----------------------FSASDRTHH--------- 203 (615)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----------------------EEEEECSSS---------
T ss_pred eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----------------------eeeeecccC---------
Confidence 346899999999999998 89999999999999987654 445677787
Q ss_pred cccc---ceEEEEEeecCC-CcEEEEEeCCCeEEEEEccCCceeEEe-e---eecCCCccCCCCCccccccccCcceeec
Q 012535 110 EIEE---KINKIRWCQSAN-SALYLLSTNDKTIKLWKVQEKKVKKVF-D---WNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (461)
Q Consensus 110 ~~~~---~v~~v~~~p~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (461)
. .|.+++|+ ++ +.++++++.|+.|++||+.+++..... . .+ .+.+. +++|+
T Consensus 204 ---~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~~v~-------~~~~~- 262 (615)
T 1pgu_A 204 ---KQGSFVRDVEFS--PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--------QGGIF-------ALSWL- 262 (615)
T ss_dssp ---CTTCCEEEEEEC--STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--------CSCEE-------EEEES-
T ss_pred ---CCCceEEEEEEC--CCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc--------CCceE-------EEEEc-
Confidence 6 79999999 55 779999999999999999988776655 2 22 22233 44555
Q ss_pred CCCccc--------------------ccccC-------------CCCCccccccCCCcEEeeeeecccCccccceeeEee
Q 012535 182 NGGCGE--------------------RNFGC-------------ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY 228 (461)
Q Consensus 182 ~g~~~~--------------------~~~~~-------------~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 228 (461)
++..+. .+... .....+++++.++.|++|| +.. ......+
T Consensus 263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d-~~~------~~~~~~~ 335 (615)
T 1pgu_A 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE-LGH------DEVLKTI 335 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE-TTE------EEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEE-CCC------CcEEEEE
Confidence 554430 00000 0223445555555555555 221 1111111
Q ss_pred ecc---------------------------------cccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC---------
Q 012535 229 AHA---------------------------------HDYHINSISNNSDGETFISA-DDLRINLWNLEISN--------- 265 (461)
Q Consensus 229 ~~~---------------------------------~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~--------- 265 (461)
.+ |...|.+++| +++..|+++ .|+.|++||+...+
T Consensus 336 -~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 336 -SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 413 (615)
T ss_dssp -CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred -eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence 33 4444555555 335555555 66777777654311
Q ss_pred -----------------------------------------------------CceeeeccCC-----CCCCCCCcceEE
Q 012535 266 -----------------------------------------------------QSFNIVDVKP-----ANMEDLTEVITS 287 (461)
Q Consensus 266 -----------------------------------------------------~~~~~~~~~~-----~~~~~~~~~v~~ 287 (461)
..+.+++... ..+.+|...|++
T Consensus 414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~ 493 (615)
T 1pgu_A 414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 493 (615)
T ss_dssp ECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred EcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEE
Confidence 1111111110 245678899999
Q ss_pred EEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc----------CCCEEE
Q 012535 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----------NGRHIL 357 (461)
Q Consensus 288 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~----------~g~~l~ 357 (461)
++|+|++ ++|++++.||.|++||+.+++. +..+.. .|...|++++|+| ++++|+
T Consensus 494 ~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~----~~~~~~-----------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 494 ISISPSE-TYIAAGDVMGKILLYDLQSREV----KTSRWA-----------FRTSKINAISWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTTEE----EECCSC-----------CCSSCEEEEEECCCC------CCSCCEEE
T ss_pred EEECCCC-CEEEEcCCCCeEEEeeCCCCcc----eeEeec-----------CCCCceeEEEEcCccccccccccCCCEEE
Confidence 9999999 9999999999999999998775 344433 0347899999999 999999
Q ss_pred Eec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 358 SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 358 s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
+++ |+.|++||+....+++..+.+|...+ .+++|+|+++ |++++.||.|++|+++.
T Consensus 558 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v---------------~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRPMKIIKALNAHKDGV---------------NNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEETTSCEEEEESSCTTCCEEETTSSTTCE---------------EEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEcCCCcEEEEECCCCceechhhhcCccce---------------EEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 987 69999999997447888888887765 5999999999 99999999999999974
No 70
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-34 Score=264.89 Aligned_cols=253 Identities=13% Similarity=0.199 Sum_probs=192.1
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
..|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 168 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----------------------IVMILQGHE------------QDI 168 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------SCE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----------------------EEEEEccCC------------CCE
Confidence 459999999999999999999999999998764 445678898 779
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeec-CCCcccccccCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFGCAS 194 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 194 (461)
.+++|+ +++.+|++++.|++|++||+++++........ ..+. +++|+| +++.+
T Consensus 169 ~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---------~~v~-------~~~~~~~~~~~l-------- 222 (393)
T 1erj_A 169 YSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---------DGVT-------TVAVSPGDGKYI-------- 222 (393)
T ss_dssp EEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECS---------SCEE-------EEEECSTTCCEE--------
T ss_pred EEEEEc--CCCCEEEEecCCCcEEEEECCCCeeEEEEEcC---------CCcE-------EEEEECCCCCEE--------
Confidence 999999 56789999999999999999998766554432 1233 678888 77775
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
++++.|+.|++|| +.................+|...|.+++|+|++++|+++ .|+.|++||++...........
T Consensus 223 ----~~~s~d~~v~iwd-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 223 ----AAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp ----EEEETTSCEEEEE-TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred ----EEEcCCCcEEEEE-CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 9999999999999 433221111000001125789999999999999999999 8999999999854321110000
Q ss_pred ----CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 274 ----KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 274 ----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
....+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++. +..+.+| ...|.+++|
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~----~~~l~~h------------~~~v~~v~~ 360 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP----LLMLQGH------------RNSVISVAV 360 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCE----EEEEECC------------SSCEEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE----EEEECCC------------CCCEEEEEe
Confidence 001356789999999999998 8999999999999999998765 4445544 488999999
Q ss_pred cc------CCCEEEEec-CCeEEEEEccC
Q 012535 350 AR------NGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 350 s~------~g~~l~s~~-d~~i~vwd~~~ 371 (461)
++ ++.+|++|+ |++|+||++..
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 86 688999976 69999999864
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-33 Score=265.68 Aligned_cols=277 Identities=16% Similarity=0.294 Sum_probs=214.8
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
+|...|+|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----------------------EEEEEcCCC------------
Confidence 56778999887 78999999999999999998765 445678888
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.+++|. +.++++|+.||+|++||+.+++.......+ .+.+. +++|+ +..
T Consensus 174 ~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--------~~~v~-------~l~~~--~~~------- 225 (435)
T 1p22_A 174 GSVLCLQYD----ERVIITGSSDSTVRVWDVNTGEMLNTLIHH--------CEAVL-------HLRFN--NGM------- 225 (435)
T ss_dssp SCEEEEECC----SSEEEEEETTSCEEEEESSSCCEEEEECCC--------CSCEE-------EEECC--TTE-------
T ss_pred CcEEEEEEC----CCEEEEEcCCCeEEEEECCCCcEEEEEcCC--------CCcEE-------EEEEc--CCE-------
Confidence 789999983 669999999999999999998876665543 22343 45554 234
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
+++++.|+.|++|| +..... ...... ..+|...|.+++| +++++++| .|+.|++||+++.+...
T Consensus 226 -----l~s~s~dg~i~vwd-~~~~~~---~~~~~~-~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~--- 290 (435)
T 1p22_A 226 -----MVTCSKDRSIAVWD-MASPTD---ITLRRV-LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR--- 290 (435)
T ss_dssp -----EEEEETTSCEEEEE-CSSSSC---CEEEEE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE---
T ss_pred -----EEEeeCCCcEEEEe-CCCCCC---ceeeeE-ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE---
Confidence 59999999999999 533222 122222 3789999999999 78899998 89999999998665433
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+.+|...|.+++|+ + .++++|+.||.|++||+++++. +..+..|. ..|.+++|
T Consensus 291 -----~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~------------~~v~~~~~-- 344 (435)
T 1p22_A 291 -----TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGHE------------ELVRCIRF-- 344 (435)
T ss_dssp -----EEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECCCS------------SCEEEEEC--
T ss_pred -----EEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCE----EEEEeCCc------------CcEEEEEe--
Confidence 356788999999995 4 7999999999999999998765 45555544 78999999
Q ss_pred CCCEEEEec-CCeEEEEEccCCCC---------CeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSG---------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
++.+|++|+ ||.|++||+.. +. .+..+.+|...+ .+++| ++++|++|+.||.
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~h~~~v---------------~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA-ALDPRAPAGTLCLRTLVEHSGRV---------------FRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH-HTSTTSCTTTTEEEEECCCSSCC---------------CCEEE--CSSCEEECCSSSE
T ss_pred cCCEEEEEeCCCcEEEEECCC-CCCccccccchheeeccCCCCCe---------------EEEEe--CCCEEEEEeCCCE
Confidence 688999976 69999999975 33 677788887765 48888 7889999999999
Q ss_pred EEEEecCCCCcc
Q 012535 422 FRVFGCSEGSAE 433 (461)
Q Consensus 422 i~iw~~~~~~~~ 433 (461)
|++||+.++...
T Consensus 407 i~iwd~~~~~~~ 418 (435)
T 1p22_A 407 ILIWDFLNDPAA 418 (435)
T ss_dssp EEEEC-------
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 72
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=262.18 Aligned_cols=302 Identities=15% Similarity=0.205 Sum_probs=222.5
Q ss_pred ccccccceEEEEEcCC---CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcc
Q 012535 31 EVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~---g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (461)
...|.+.|++++|+|+ |++|++|+.||.|+|||+.+... .....+.+|.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~------- 86 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQMHT------- 86 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEEECS-------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEecccc-------
Confidence 3479999999999999 69999999999999999986322 1335677788
Q ss_pred ccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCccee--ecCCCc
Q 012535 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY--MANGGC 185 (461)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~g~~ 185 (461)
..|.+++|+ +++.+|++++.||.|++||+.+++....... .+.+. +++| +|++..
T Consensus 87 -----~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------~~~v~-------~~~~~~~~~~~~ 143 (368)
T 3mmy_A 87 -----GPVLDVCWS--DDGSKVFTASCDKTAKMWDLSSNQAIQIAQH---------DAPVK-------TIHWIKAPNYSC 143 (368)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEEC---------SSCEE-------EEEEEECSSCEE
T ss_pred -----CCEEEEEEC--cCCCEEEEEcCCCcEEEEEcCCCCceeeccc---------cCceE-------EEEEEeCCCCCE
Confidence 789999999 5678999999999999999999886654332 23344 7788 788887
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~ 264 (461)
+ ++++.|+.|++|| +.... +...+ ..+ ..+.++.+. ...++++ .++.+.+|+++..
T Consensus 144 l------------~~~~~dg~i~vwd-~~~~~------~~~~~-~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 200 (368)
T 3mmy_A 144 V------------MTGSWDKTLKFWD-TRSSN------PMMVL-QLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQ 200 (368)
T ss_dssp E------------EEEETTSEEEEEC-SSCSS------CSEEE-ECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSS
T ss_pred E------------EEccCCCcEEEEE-CCCCc------EEEEE-ecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccc
Confidence 5 9999999999999 54322 12222 233 345555555 4466666 8999999999865
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCe----EEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM----LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
....... ...+...+.++.+.++. .. +++++.||.|++||++..... ..+..+..+..........+|
T Consensus 201 ~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 201 PSEFRRI------ESPLKHQHRCVAIFKDK-QNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp CEEEEEC------CCSCSSCEEEEEEEECT-TSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEE
T ss_pred cchhhhc------cccccCCCceEEEcccC-CCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeeccccccccccc
Confidence 5444321 12234455666666554 33 999999999999999886321 114555555433333344455
Q ss_pred ccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
...|.+++|+|++++|++|+ ||.|++||+.+ ++++..+..|...+ .+++|+|++++|++++.|
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPI---------------SACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSCE---------------EEEEECTTSSCEEEEECC
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCC-CcEEEEecCCCCCc---------------eEEEECCCCCeEEEEecc
Confidence 56899999999999999976 69999999996 88888888887765 499999999999999999
Q ss_pred CeEEEEecCCC
Q 012535 420 NLFRVFGCSEG 430 (461)
Q Consensus 420 g~i~iw~~~~~ 430 (461)
+..+.|++-..
T Consensus 337 ~~~~~~~~~~~ 347 (368)
T 3mmy_A 337 DWSKGHEFYNP 347 (368)
T ss_dssp CSTTCGGGCCT
T ss_pred cccccccccCC
Confidence 87666665543
No 73
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-33 Score=253.98 Aligned_cols=254 Identities=15% Similarity=0.249 Sum_probs=198.2
Q ss_pred ccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee---EEeeeecCCCccCCCCC
Q 012535 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK---KVFDWNVHPEKAAGNGP 166 (461)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~~~~~~ 166 (461)
+.+...+.+|. +.|++++|+|. ++.+|++|+.|++|++|++...... .......+ ...
T Consensus 7 ~~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h------~~~ 67 (319)
T 3frx_A 7 LVLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH------SHI 67 (319)
T ss_dssp EEEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC------SSC
T ss_pred EEEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccccccceEEeCC------ccc
Confidence 44566789999 88999999963 3479999999999999998753221 11122211 233
Q ss_pred ccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC
Q 012535 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (461)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (461)
+. +++|+|+++.+ ++++.|+.|++|| +.. .++...+ .+|...|.+++|+|++.
T Consensus 68 v~-------~~~~s~dg~~l------------~s~s~D~~v~~wd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~ 120 (319)
T 3frx_A 68 VQ-------DCTLTADGAYA------------LSASWDKTLRLWD-VAT------GETYQRF-VGHKSDVMSVDIDKKAS 120 (319)
T ss_dssp EE-------EEEECTTSSEE------------EEEETTSEEEEEE-TTT------TEEEEEE-ECCSSCEEEEEECTTSC
T ss_pred EE-------EEEECCCCCEE------------EEEeCCCEEEEEE-CCC------CCeeEEE-ccCCCcEEEEEEcCCCC
Confidence 44 77999999985 9999999999999 432 2334443 78999999999999999
Q ss_pred EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCC-----CCeEEEEecCCeEEEEECCCcccccc
Q 012535 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-----CNMLAYSSSKGSIRLIDMRQSALCDT 320 (461)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~ 320 (461)
+|+++ .|+.|++||++. + ... .+.+|...|.++.|.|.. ...|++++.|+.|++||+++.+.
T Consensus 121 ~l~s~s~D~~i~vwd~~~-~-~~~-------~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--- 188 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIKG-Q-CLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--- 188 (319)
T ss_dssp EEEEEETTSCEEEEETTS-C-EEE-------EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---
T ss_pred EEEEEeCCCeEEEEECCC-C-eEE-------EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---
Confidence 99999 899999999973 2 221 466799999999999953 14899999999999999988654
Q ss_pred cccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCcc
Q 012535 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 399 (461)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (461)
...+.+ |...|.+++|+|+|++|++|+ |+.|++||+.. ++.+..+..+..
T Consensus 189 -~~~~~~------------h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~--------------- 239 (319)
T 3frx_A 189 -EADFIG------------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-KKAMYTLSAQDE--------------- 239 (319)
T ss_dssp -EEEECC------------CCSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECCSC---------------
T ss_pred -heeecC------------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCc---------------
Confidence 333444 448899999999999999976 69999999996 777777765532
Q ss_pred ceeeEEEecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 400 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
|.+++|+|++.+|++++.+ .+++|++..+..
T Consensus 240 -v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~ 270 (319)
T 3frx_A 240 -VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL 270 (319)
T ss_dssp -EEEEEECSSSSEEEEEETT-EEEEEEETTEEE
T ss_pred -EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee
Confidence 2599999999999988765 599999987643
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.3e-33 Score=263.39 Aligned_cols=287 Identities=14% Similarity=0.156 Sum_probs=216.1
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|++++|+|++ +|++|+.||+|++||+.+++ ....+.+|.
T Consensus 158 ~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 203 (464)
T 3v7d_B 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----------------------CTHVFEGHN---------- 203 (464)
T ss_dssp ECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS----------
T ss_pred EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----------------------EEEEECCCC----------
Confidence 34699999999999988 99999999999999998764 445677888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCC---------------ccCCCCCccccccccC
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE---------------KAAGNGPIFGSHVSAI 175 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~ 175 (461)
..|.+++|++.+++.++++++.|++|++||+.++............. .......
T Consensus 204 --~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 272 (464)
T 3v7d_B 204 --STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS--------- 272 (464)
T ss_dssp --SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC---------
T ss_pred --CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce---------
Confidence 78999999987788899999999999999998765332211110000 0000111
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
..++++++.. +++++.|+.|++|| +.. ..+...+ .+|...|.+++|+|+++.+++| .|+
T Consensus 273 v~~~~~~~~~------------l~~~~~d~~i~vwd-~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 273 VRTVSGHGNI------------VVSGSYDNTLIVWD-VAQ------MKCLYIL-SGHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp EEEEEEETTE------------EEEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred EEEEcCCCCE------------EEEEeCCCeEEEEE-CCC------CcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 2244566665 49999999999999 432 3334443 7899999999999999999999 899
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
.|++||+++++... .+.+|...|.+++|+ + .+|++++.||.|++||+++... .....
T Consensus 333 ~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~----~~~~~-------- 389 (464)
T 3v7d_B 333 TIRIWDLENGELMY--------TLQGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSR----KFSYH-------- 389 (464)
T ss_dssp CEEEEETTTTEEEE--------EECCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCE----EEEEE--------
T ss_pred cEEEEECCCCcEEE--------EEeCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCce----eeeec--------
Confidence 99999998655433 466799999999998 3 6899999999999999988653 22221
Q ss_pred ccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeE-EeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
|...+..++|++++++|++|+|+.|++||+.+ ++.+.. +..|... |++++|+ +..++
T Consensus 390 -----~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~-g~~~~~~~~~~~~~---------------v~~v~~~-~~~l~ 447 (464)
T 3v7d_B 390 -----HTNLSAITTFYVSDNILVSGSENQFNIYNLRS-GKLVHANILKDADQ---------------IWSVNFK-GKTLV 447 (464)
T ss_dssp -----CTTCCCEEEEEECSSEEEEEETTEEEEEETTT-CCEEESCTTTTCSE---------------EEEEEEE-TTEEE
T ss_pred -----CCCCccEEEEEeCCCEEEEecCCeEEEEECCC-CcEEehhhccCCCc---------------EEEEEec-CCEEE
Confidence 12567889999999999999999999999996 776654 4444443 3589997 45566
Q ss_pred EEecCCCeEEEEec
Q 012535 414 ATGSYSNLFRVFGC 427 (461)
Q Consensus 414 ~s~~~dg~i~iw~~ 427 (461)
++++.||.+.+|-+
T Consensus 448 ~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 448 AAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEeCCeEEEEEe
Confidence 67777887766543
No 75
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.9e-33 Score=254.45 Aligned_cols=267 Identities=10% Similarity=0.124 Sum_probs=193.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|...|++++|+|++.+|++|+.|++|++||+.+++ ....+.+|.
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~~~~h~---------- 118 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-----------------------TYKRFVGHQ---------- 118 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC-----------------------EEEEEECCC----------
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEcCCC----------
Confidence 45799999999999999999999999999999998765 445678898
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +++.+|++++.|++|++||+............. ....+. +++|+|++.... .
T Consensus 119 --~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~~~v~-------~~~~~~~~~~~~--~ 179 (343)
T 2xzm_R 119 --SEVYSVAFS--PDNRQILSAGAEREIKLWNILGECKFSSAEKEN------HSDWVS-------CVRYSPIMKSAN--K 179 (343)
T ss_dssp --SCEEEEEEC--SSTTEEEEEETTSCEEEEESSSCEEEECCTTTS------CSSCEE-------EEEECCCCCSCS--C
T ss_pred --CcEEEEEEC--CCCCEEEEEcCCCEEEEEeccCCceeeeecccC------CCceee-------eeeecccccccc--c
Confidence 789999999 567899999999999999997443222111000 122333 678888774210 1
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
......++++++.|+.|++|| . . ...... +.+|...|.+++|+|++++|++| .|+.|++||+........
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd-~---~----~~~~~~-~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWN-T---N----FQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEE-T---T----TEEEEE-EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred cCCCCCEEEEEcCCCEEEEEc-C---C----CceeEE-EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 111224569999999999999 2 1 223333 37899999999999999999999 899999999954443322
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
. ..+...|.+++|+|++ .+++ ++.|+.|++||+.++.... +..+.... ........+|...|.+++|
T Consensus 251 ~--------~~~~~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 251 E--------FDAGSTINQIAFNPKL-QWVA-VGTDQGVKIFNLMTQSKAP--VCTIEAEP-ITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp E--------EECSSCEEEEEECSSS-CEEE-EEESSCEEEEESSSCCSCS--EEECCCCS-GGGBTTBCCSCCCEEEEEE
T ss_pred e--------ecCCCcEEEEEECCCC-CEEE-EECCCCEEEEEeCCCCCCc--eEEeecCc-chhhhhhcCCCCceEEEEE
Confidence 1 1245569999999998 6665 5568889999998765321 11222110 0001123457788999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
+|+|++|++|+ ||.|++|++.+
T Consensus 318 sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 318 NALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCCeEEEecCCceEEEEEEEc
Confidence 99999999976 69999999864
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=272.80 Aligned_cols=265 Identities=9% Similarity=0.031 Sum_probs=194.5
Q ss_pred ccccccceEEEEEcCCC---------CEEEE-------------------eecCCcEEEEEcCCCCCCCCcccccccccc
Q 012535 31 EVQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDY 82 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g---------~~l~t-------------------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 82 (461)
.+.+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++..
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------ 196 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------ 196 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------------
Confidence 33467788999999876 56766 447789999999775421
Q ss_pred cccCCccccccccccCCCcchhhccccccccceEEEEEeec----CCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCC
Q 012535 83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP 158 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~----~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 158 (461)
......+.+|. ..|.+++|+|. +++.+|++++.||+|++||+..+.........
T Consensus 197 -------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~--- 254 (524)
T 2j04_B 197 -------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM--- 254 (524)
T ss_dssp -------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC---
T ss_pred -------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee---
Confidence 00112345566 67999999975 34679999999999999999765321000000
Q ss_pred CccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceee
Q 012535 159 EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238 (461)
Q Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 238 (461)
+ ..+... +.+|...|.+
T Consensus 255 ------------------------------------------------------~--------~~p~~~-l~~h~~~v~s 271 (524)
T 2j04_B 255 ------------------------------------------------------C--------EKPSLT-LSLADSLITT 271 (524)
T ss_dssp ------------------------------------------------------C--------CSCSEE-ECCTTTCEEE
T ss_pred ------------------------------------------------------e--------cCceEE-EEcCCCCEEE
Confidence 0 000011 2678899999
Q ss_pred EEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEE--EEeCCCCCeEEEEecCCeEEEEECCCc
Q 012535 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (461)
Q Consensus 239 i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (461)
++|++++ .|++| .||+|++||++++..... .+.+|...|++| +|+|++..+||+|+.|++|+|||++++
T Consensus 272 v~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 272 FDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred EEecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 9999865 78888 899999999986543322 356799999999 567774378999999999999999887
Q ss_pred ccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCcccccccccc
Q 012535 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (461)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (461)
+. +.++.++... ..|.+++|+|+++.+++++ |++|++||++. +..+..+.+|...+
T Consensus 344 ~~----~~~~~~~~~~----------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V-------- 400 (524)
T 2j04_B 344 AT----TKTTVSRFRG----------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI-------- 400 (524)
T ss_dssp HH----HCEEEEECSC----------CSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE--------
T ss_pred Cc----cccccccccc----------CcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce--------
Confidence 64 3344433210 2478999999999999876 59999999996 77778899998876
Q ss_pred CCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
++++|+|++++|++|+.||.|++||+..+
T Consensus 401 -------~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 401 -------TAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp -------EEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred -------EEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 59999999999999999999999998654
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=282.30 Aligned_cols=259 Identities=14% Similarity=0.220 Sum_probs=203.6
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+|.+.|++++|+|+|++|++|+.||.|+|||+.++. .+....+.+|.
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------~~~~~~l~~h~---------- 53 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE---------- 53 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------EEEEEEECCCS----------
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------CccceeccCCc----------
Confidence 34799999999999999999999999999999987432 23556788898
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|++++|+|..++.+|++|+.||+|++||+.+++......
T Consensus 54 --~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------- 94 (753)
T 3jro_A 54 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 94 (753)
T ss_dssp --SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-------------------------------------
Confidence 88999999965558899999999999999988764222111
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCc
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
..+|...|.+++|+|+ ++.+++| .||.|++||+++....
T Consensus 95 --------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 95 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred --------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 2567789999999999 9999999 8999999999866433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCC-------------CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
... .+.+|...|.+++|+|. + .+|++|+.||.|++||++++.........+.
T Consensus 137 ~~~------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-------- 201 (753)
T 3jro_A 137 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------- 201 (753)
T ss_dssp CCE------EEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEEC--------
T ss_pred cee------EeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeec--------
Confidence 221 35678999999999994 6 8999999999999999987643222233333
Q ss_pred ccccccccceeEEEEccC---CCEEEEec-CCeEEEEEccCCCC----CeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~---g~~l~s~~-d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
+|...|.+++|+|+ +++|++|+ ||.|++||+..... .+.....|... |++++|
T Consensus 202 ----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~l~~ 262 (753)
T 3jro_A 202 ----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASW 262 (753)
T ss_dssp ----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC---------------CCCEEE
T ss_pred ----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc---------------eEEEEE
Confidence 34588999999999 89999976 69999999986211 22222223333 359999
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCC
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+|++++|++|+.||.|++|++..+.
T Consensus 263 spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 263 SLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999999999999999998643
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.4e-32 Score=256.77 Aligned_cols=277 Identities=15% Similarity=0.246 Sum_probs=216.6
Q ss_pred ccccccce-EEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V-~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
..+|.+.| +|+++ +|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 159 (445)
T 2ovr_B 114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------- 159 (445)
T ss_dssp EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCC---------
Confidence 44688765 55554 68999999999999999998765 456678898
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+ +.++++++.||+|++||+.+++.......+. +.+. ++.+ ++..
T Consensus 160 ---~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~--------~~v~-------~~~~--~~~~---- 211 (445)
T 2ovr_B 160 ---GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTLYGHT--------STVR-------CMHL--HEKR---- 211 (445)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEECCCS--------SCEE-------EEEE--ETTE----
T ss_pred ---CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEECCCC--------CcEE-------EEEe--cCCE----
Confidence 789999997 4599999999999999999987766655432 2333 4444 3444
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
+++++.|+.|++|| +.. .++...+ .+|...|.+++| +++.++++ .|+.|++||+++.+...
T Consensus 212 --------l~s~s~dg~i~~wd-~~~------~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 212 --------VVSGSRDATLRVWD-IET------GQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp --------EEEEETTSEEEEEE-SSS------CCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred --------EEEEeCCCEEEEEE-CCC------CcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 49999999999999 432 2233333 789999999999 67888888 89999999998654332
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
.+.+|...|.+++| ++ ..+++++.||.|++||+++++. +..+..+. ..+.++.
T Consensus 274 --------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~------------~~v~~~~ 326 (445)
T 2ovr_B 274 --------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTLTGHQ------------SLTSGME 326 (445)
T ss_dssp --------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEECCCC------------SCEEEEE
T ss_pred --------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEEcCCc------------ccEEEEE
Confidence 35678899999999 55 8999999999999999998765 44554443 6788777
Q ss_pred EccCCCEEEEec-CCeEEEEEccCCCCCeeEEee---ccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQV---HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
+ ++++|++|+ ||.|++||+++ ++.+..+.. |...+ .+++|+ +++|++|+.||.|++
T Consensus 327 ~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 327 L--KDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKL 386 (445)
T ss_dssp E--ETTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEE
T ss_pred E--eCCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEE
Confidence 7 467888876 69999999986 788888876 43333 478884 689999999999999
Q ss_pred EecCCCCccc
Q 012535 425 FGCSEGSAES 434 (461)
Q Consensus 425 w~~~~~~~~~ 434 (461)
||+.+++...
T Consensus 387 wd~~~~~~~~ 396 (445)
T 2ovr_B 387 WDLKTGEFIR 396 (445)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCceee
Confidence 9999987664
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-31 Score=253.05 Aligned_cols=278 Identities=13% Similarity=0.233 Sum_probs=219.9
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|++++|+ +++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 199 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CIHTLYGHT---------- 199 (445)
T ss_dssp CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS----------
T ss_pred EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EEEEECCCC----------
Confidence 44699999999998 6699999999999999998764 445677888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..|.+++|+ +..+++++.||+|++||+.+++.......+. +.+. ++++ ++..
T Consensus 200 --~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~v~-------~~~~--~~~~----- 251 (445)
T 2ovr_B 200 --STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHV--------AAVR-------CVQY--DGRR----- 251 (445)
T ss_dssp --SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCS--------SCEE-------EEEE--CSSC-----
T ss_pred --CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCc--------ccEE-------EEEE--CCCE-----
Confidence 779999997 4589999999999999999988766655432 2233 4444 5665
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+++++.|+.|++|| +.. ..+...+ .+|...|.+++| ++..++++ .|+.|++||+++++...
T Consensus 252 -------l~~~~~dg~i~iwd-~~~------~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~- 313 (445)
T 2ovr_B 252 -------VVSGAYDFMVKVWD-PET------ETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH- 313 (445)
T ss_dssp -------EEEEETTSCEEEEE-GGG------TEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred -------EEEEcCCCEEEEEE-CCC------CcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE-
Confidence 49999999999999 432 2334443 789999999999 78899998 89999999998665443
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
.+.+|...+.++.++ + .+|++|+.||.|++||+++++. +..+..+ ..|...|.+++|
T Consensus 314 -------~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~---------~~~~~~v~~~~~ 370 (445)
T 2ovr_B 314 -------TLTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQC----LQTLQGP---------NKHQSAVTCLQF 370 (445)
T ss_dssp -------EECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECST---------TSCSSCEEEEEE
T ss_pred -------EEcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcE----EEEEccC---------CCCCCCEEEEEE
Confidence 356688888888875 4 6899999999999999988765 3444431 124478999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEe-----eccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe--
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-- 421 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-- 421 (461)
+ +++|++|+ ||.|++||+.+ ++.+..+. .|... |++++|+|++.+|++|+.||.
T Consensus 371 ~--~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 371 N--KNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGGSGGV---------------VWRIRASNTKLVCAVGSRNGTEE 432 (445)
T ss_dssp C--SSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGGGTCE---------------EEEEEECSSEEEEEEECSSSSSC
T ss_pred C--CCEEEEEeCCCeEEEEECCC-CceeeeeeccccCCCCce---------------EEEEEecCCEEEEEEcccCCCCc
Confidence 6 57888876 69999999996 78877773 33333 369999999999999999997
Q ss_pred --EEEEecCCC
Q 012535 422 --FRVFGCSEG 430 (461)
Q Consensus 422 --i~iw~~~~~ 430 (461)
|.+||+...
T Consensus 433 ~~l~v~df~~~ 443 (445)
T 2ovr_B 433 TKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 999999854
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.8e-32 Score=256.25 Aligned_cols=269 Identities=13% Similarity=0.179 Sum_probs=196.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeec-CCCccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g~~~~~~~~ 191 (461)
..|++|+|+|. ++.+|++|+.||+|+|||+.+++.........+ .+.|. +++|+| ++..+
T Consensus 120 ~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH------~~~V~-------~l~f~p~~~~~l----- 180 (435)
T 4e54_B 120 RRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA------GGSIT-------GLKFNPLNTNQF----- 180 (435)
T ss_dssp SCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS------SCCCC-------EEEECSSCTTEE-----
T ss_pred CCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC------CCCEE-------EEEEeCCCCCEE-----
Confidence 77999999973 456899999999999999988765555443322 34455 889998 46664
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeee--cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
++++.|+.|++|| +... ....+. ..+...+.+++|+|++++|++| .||.|++||++. +..
T Consensus 181 -------~s~s~D~~v~iwd-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~- 243 (435)
T 4e54_B 181 -------YASSMEGTTRLQD-FKGN-------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL- 243 (435)
T ss_dssp -------EEECSSSCEEEEE-TTSC-------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC-
T ss_pred -------EEEeCCCEEEEee-ccCC-------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee-
Confidence 9999999999999 4321 112221 3344567899999999999999 899999999873 322
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
..+.+|...|++++|+|++..+|++|+.|+.|++||+++.... ..+ ....+|...|++++
T Consensus 244 -------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----~~~---------~~~~~h~~~v~~~~ 303 (435)
T 4e54_B 244 -------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----ASF---------LYSLPHRHPVNAAC 303 (435)
T ss_dssp -------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS----SCC---------SBCCBCSSCEEECC
T ss_pred -------EEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc----ceE---------EEeeecccccccee
Confidence 1577899999999999998668999999999999999876532 111 11234558899999
Q ss_pred EccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec----------
Q 012535 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---------- 417 (461)
Q Consensus 349 ~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---------- 417 (461)
|+|+|++|++++ |+.|+|||+.. +.....+..|........ .+..+.|+|++.++++++
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred ECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 999999999976 69999999996 777777776654321100 012445555555554443
Q ss_pred --CCCeEEEEecCCCCccceeeccCCCCCccc
Q 012535 418 --YSNLFRVFGCSEGSAESTTLEASKNPMSLF 447 (461)
Q Consensus 418 --~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 447 (461)
.++.|++||..+++........|...+...
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSL 405 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCE
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEE
Confidence 346799999999987755556666665544
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3e-32 Score=253.64 Aligned_cols=294 Identities=12% Similarity=0.129 Sum_probs=217.7
Q ss_pred eEEEEEcCCCCE-EEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 38 ISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 38 V~~~~~s~~g~~-l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
...++++|+... +++|+.||.|+||++...... ......+.+|. ..|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V~ 85 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APVL 85 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCEE
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCEE
Confidence 446888987654 445789999999998654211 11334577888 8899
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCc-------eeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKK-------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
+++|+|. ++.+|++++.||+|++|++.++. .......+ .+.+. +++|+|++..+
T Consensus 86 ~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h--------~~~v~-------~~~~~p~~~~~--- 146 (402)
T 2aq5_A 86 DIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH--------TKRVG-------IVAWHPTAQNV--- 146 (402)
T ss_dssp EEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC--------SSCEE-------EEEECSSBTTE---
T ss_pred EEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC--------CCeEE-------EEEECcCCCCE---
Confidence 9999951 67899999999999999998873 23333322 23344 78999998422
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++++.|+.|++|| +.. ..+...+. .+|...|.+++|+|++++|+++ .|+.|++||+++.+..
T Consensus 147 --------l~s~~~dg~i~iwd-~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 147 --------LLSAGCDNVILVWD-VGT------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp --------EEEEETTSCEEEEE-TTT------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred --------EEEEcCCCEEEEEE-CCC------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence 49999999999999 432 22333322 6789999999999999999999 8999999999865543
Q ss_pred eeeeccCCCCC-CCCCcc-eEEEEEeCCCCCeEEEE---ecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 268 FNIVDVKPANM-EDLTEV-ITSAEFHPTHCNMLAYS---SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 268 ~~~~~~~~~~~-~~~~~~-v~~v~~~p~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
.. + ..|... +.+++|+|++ .+|++| +.|+.|++||+++.... +..... .|..
T Consensus 212 ~~--------~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~~-----------~~~~ 268 (402)
T 2aq5_A 212 AE--------KDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP---LSLQEL-----------DTSS 268 (402)
T ss_dssp EE--------EECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC---SEEEEC-----------CCCS
T ss_pred ee--------eccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC---ceEEec-----------cCCC
Confidence 32 3 446554 8999999998 899998 79999999999886531 111111 1236
Q ss_pred ceeEEEEccCCCEEEE-ec-CCeEEEEEccCCCCC-eeEEeecc--CccccccccccCCCccceeeEEEecCCCEEEEec
Q 012535 343 SISDIKFARNGRHILS-RD-YMTLKLWDINMDSGP-VATFQVHE--HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s-~~-d~~i~vwd~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (461)
.+.+++|+|++++|++ |+ |+.|++||+.. +++ +..+..|. ..+ .+++|+|++.++++
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s-- 330 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-EAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN-- 330 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECS-STTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecC-CCcceEeecccccCCcc---------------cceEEeccccccee--
Confidence 7999999999999974 64 79999999996 553 66676664 332 49999999998875
Q ss_pred CCCeEEEEecCCCCccceee
Q 012535 418 YSNLFRVFGCSEGSAESTTL 437 (461)
Q Consensus 418 ~dg~i~iw~~~~~~~~~~~~ 437 (461)
.++.+++|++.+++.+...+
T Consensus 331 ~~~~~~~~~l~~~~~~~i~~ 350 (402)
T 2aq5_A 331 KCEIARFYKLHERKCEPIAM 350 (402)
T ss_dssp GTEEEEEEEEETTEEEEEEE
T ss_pred cceeEEEEEcCCCcEEEEEE
Confidence 45699999999876554433
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-31 Score=271.69 Aligned_cols=314 Identities=15% Similarity=0.172 Sum_probs=230.6
Q ss_pred ceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccc
Q 012535 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (461)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (461)
..|++... ........|...|++++|+|++++||+|+.||.|++||+.+++ ...
T Consensus 38 ~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------------------~~~ 91 (814)
T 3mkq_A 38 EIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------------------KVV 91 (814)
T ss_dssp EEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------------------EEE
T ss_pred EEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEE
Confidence 45776531 1112234689999999999999999999999999999998765 345
Q ss_pred cccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC-ceeEEeeeecCCCccCCCCCccccccc
Q 012535 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (461)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (461)
.+.+|. ..|.+++|+ +++.+|++++.||+|++|++.++ ........+ .+.+.
T Consensus 92 ~~~~~~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------~~~v~----- 144 (814)
T 3mkq_A 92 DFEAHP------------DYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--------EHFVM----- 144 (814)
T ss_dssp EEECCS------------SCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--------SSCEE-----
T ss_pred EEecCC------------CCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--------CCcEE-----
Confidence 677888 789999999 56779999999999999999876 444444433 23344
Q ss_pred cCcceeec-CCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC--CCCEEEE
Q 012535 174 AIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFIS 250 (461)
Q Consensus 174 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~ 250 (461)
+++|+| ++..+ ++++.|+.|++|| +.... ........+...+.+++|+| ++.+|++
T Consensus 145 --~~~~~p~~~~~l------------~~~~~dg~v~vwd-~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 145 --CVAFNPKDPSTF------------ASGCLDRTVKVWS-LGQST------PNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp --EEEEETTEEEEE------------EEEETTSEEEEEE-TTCSS------CSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred --EEEEEcCCCCEE------------EEEeCCCeEEEEE-CCCCc------ceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 789999 77774 9999999999999 43322 12222245558899999999 8999999
Q ss_pred e-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
+ .|+.|++||+++..... .+.+|...|.+++|+|++ .+|++++.||.|++||+.+++. +..+..+.
T Consensus 204 ~~~dg~i~~~d~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~~ 270 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSCVA--------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTLNVGL 270 (814)
T ss_dssp ECTTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSE----EEEECCSS
T ss_pred EeCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEeecCC
Confidence 9 89999999998654332 356688999999999999 8999999999999999998765 34444443
Q ss_pred CCCccccccccccceeEEEEccCCC--EEEEecCCeEEEEEccCCCCCeeEEeeccCccc--------------------
Q 012535 330 APGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLRP-------------------- 387 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~--~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-------------------- 387 (461)
..+.+++|+|+|. +++++.++.+.+|++.. ......+......+.
T Consensus 271 ------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 337 (814)
T 3mkq_A 271 ------------ERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNE 337 (814)
T ss_dssp ------------SSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCC
T ss_pred ------------CcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeeccccc
Confidence 6799999999987 67778888999999875 333322221110000
Q ss_pred --------cccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 388 --------KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 388 --------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
..........-..+.+++|+|+|++|++++ ||.+.+|++..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 338 EVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred ccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 000000001111345889999999998888 78999998764
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=254.24 Aligned_cols=270 Identities=7% Similarity=-0.029 Sum_probs=200.4
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
+-...|.+++|+|||+++|+++.|++|+ |.... ..+.+|.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--------------------------~~l~gh~------------ 52 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--------------------------KDINCNS------------ 52 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC--------------------------SCCSSBG------------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc--------------------------ceecCCC------------
Confidence 3468899999999999999999999999 64333 2446888
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.+++|+| +| .++++.+|+.+..... ... ....|. +++|+|+|+.+
T Consensus 53 ~~v~~V~FsP--dg-------~~~~~~~~~~~~~~~~---~~~-------~~~~V~-------~vawSPdG~~L------ 100 (588)
T 2j04_A 53 KNLFHVKEFP--LE-------FENKLDFELAQQNGLL---NSQ-------PVCYPR-------VCKPSPIDDWM------ 100 (588)
T ss_dssp GGTEEEEEEC--CC-------CCCTTTTSCCCSSCSS---TTS-------CSCCEE-------EEEECSSSSCE------
T ss_pred ccEEEEEECC--CC-------CcceEEEEeCCCceEe---ecC-------CCCcEE-------EEEECCCCCEE------
Confidence 7799999995 55 5666666654432211 110 023344 88999999986
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeeccccc-----ceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-----HINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
++++.||.|++|| . +. +...+ . |.. .|.+++|+|+|++|++| .||+|++||+..+..
T Consensus 101 ------As~s~dg~V~iwd-~---~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 101 ------AVLSNNGNVSVFK-D---NK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp ------EEEETTSCEEEEE-T---TE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred ------EEEeCCCcEEEEe-C---Cc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 9999999999999 2 21 33332 4 544 59999999999999999 899999999986532
Q ss_pred ------ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 267 ------SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 267 ------~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
....+ + ....+|...|.+++|+|+| +++++.|+.|++||+..+... ....++. .+|
T Consensus 164 ~~~~~i~l~ti--~-~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~-----------~~h 225 (588)
T 2j04_A 164 NTPEFYFESSI--R-LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ-----------NAS 225 (588)
T ss_dssp TCCCCEEEEEE--E-CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE-----------CCC
T ss_pred ccccceeeeee--e-cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec-----------ccc
Confidence 11111 0 1236688999999999986 888999999999999876521 0012332 123
Q ss_pred ccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE--ecCCCEEEEecC
Q 012535 341 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVATGSY 418 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~ 418 (461)
...|.+++|+ |++||++++++|++||+.. ++......+|...+ .+++| +||+..|+++++
T Consensus 226 ~~~V~svaFs--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCCEEEE--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSS
T ss_pred cCcEEEEEEE--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcC
Confidence 3689999999 6899998889999999984 44423333787765 48999 999999999999
Q ss_pred CCeEEEEecC
Q 012535 419 SNLFRVFGCS 428 (461)
Q Consensus 419 dg~i~iw~~~ 428 (461)
||. ++|..+
T Consensus 288 dG~-klw~~d 296 (588)
T 2j04_A 288 TSY-KVLLED 296 (588)
T ss_dssp CEE-EEEESS
T ss_pred CCC-EEEeec
Confidence 999 999986
No 84
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.3e-31 Score=251.33 Aligned_cols=269 Identities=17% Similarity=0.264 Sum_probs=201.4
Q ss_pred cccccccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
....|.+.|++++|+|+ +++||+|+.||.|++|++........ ..........+.+|.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~-------- 181 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ-------- 181 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS--------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC--------
Confidence 35679999999999997 78999999999999999975321100 001233556677888
Q ss_pred cccccceEEEEEeecCCCc-EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
..|.+++|+| ++. +|++++.||+|++|++..+......
T Consensus 182 ----~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------------- 220 (430)
T 2xyi_A 182 ----KEGYGLSWNP--NLNGYLLSASDDHTICLWDINATPKEHRV----------------------------------- 220 (430)
T ss_dssp ----SCCCCEEECT--TSTTEEEEECTTSCEEEEETTSCCBGGGE-----------------------------------
T ss_pred ----CCeEEEEeCC--CCCCeEEEEeCCCeEEEEeCCCCCCCCce-----------------------------------
Confidence 7799999995 455 9999999999999999864210000
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
+ ..... ..+|...|.+++|+| ++.+|+++ .|+.|++||+++..
T Consensus 221 -------------------------~---------~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 221 -------------------------I---------DAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp -------------------------E---------ECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred -------------------------e---------cccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 0 00011 257888999999999 67888888 89999999999663
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
....+ ..+..|...|++++|+|++..+|++|+.||.|++||++..... +..+..| ...|.
T Consensus 266 ~~~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~h------------~~~v~ 325 (430)
T 2xyi_A 266 TSKPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFESH------------KDEIF 325 (430)
T ss_dssp SSSCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEECC------------SSCEE
T ss_pred CCcce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeecC------------CCCEE
Confidence 11111 1345688999999999998558999999999999999874321 3444444 47899
Q ss_pred EEEEccCCC-EEEEec-CCeEEEEEccCCC-------------CCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 346 DIKFARNGR-HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 346 ~l~~s~~g~-~l~s~~-d~~i~vwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
+++|+|+++ +|++++ |+.|++||+...+ +.+..+.+|...+ .+++|+|++
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~ 390 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNE 390 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSS
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCC
Confidence 999999985 577765 6999999998522 3445555565544 599999999
Q ss_pred C-EEEEecCCCeEEEEecCCC
Q 012535 411 G-RVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 411 ~-~l~s~~~dg~i~iw~~~~~ 430 (461)
+ +|++++.||.|+||++..+
T Consensus 391 ~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEECCCCEEEeEcccc
Confidence 9 8999999999999999854
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-31 Score=249.55 Aligned_cols=257 Identities=11% Similarity=0.008 Sum_probs=185.9
Q ss_pred cceEEEEEeecCCCcEE-EEEeCCCeEEEEEcc--CCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l-~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|+ +++.+| ++++.||+|++|++. +++.......+.. ...+. +++|+|+++.+
T Consensus 103 ~~v~~~~~s--~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~~v~-------~~~~sp~~~~l--- 164 (450)
T 2vdu_B 103 SYIRNLRLT--SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF------SKRPN-------AISIAEDDTTV--- 164 (450)
T ss_dssp CCEEEEEEC--TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC------SSCEE-------EEEECTTSSEE---
T ss_pred CceEEEEEc--CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC------CCCce-------EEEEcCCCCEE---
Confidence 579999999 567785 888999999999999 7776666543322 12333 78999999985
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC---CCEEEEe-CCCeEEEEEccCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
++++.++.+++|+ ++...... .+... +.+|...|.+++|+|+ +++|+++ .|+.|++||+++..
T Consensus 165 ---------~~~~~~g~v~~~~-~~~~~~~~--~~~~~-~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 165 ---------IIADKFGDVYSID-INSIPEEK--FTQEP-ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp ---------EEEETTSEEEEEE-TTSCCCSS--CCCCC-SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred ---------EEEeCCCcEEEEe-cCCccccc--cccee-eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence 9999999999999 55433221 01112 3688899999999999 9999999 89999999998665
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc-----------
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR----------- 334 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------- 334 (461)
.... .+.+|...|++++|+ ++ .+|++++.|+.|++||+++++.. ..+..+......
T Consensus 232 ~~~~-------~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 232 IVDK-------WLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp CEEE-------ECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----
T ss_pred eeee-------eecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccc
Confidence 4432 155799999999999 88 99999999999999999988752 333211100000
Q ss_pred --ccccccccceeEEEEccCCCEEEEec--CCeEEEEEc--cCCC---CCeeEEeeccCccccccccccCCCccceeeEE
Q 012535 335 --SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDI--NMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 335 --~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
.....+...|.+++|+|++++|++++ ++.|++|++ .. + ..+..+..| ..+ ++++
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~ 361 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLS 361 (450)
T ss_dssp ------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEE
T ss_pred cccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEE
Confidence 00012235799999999999999875 599999999 43 4 445566666 322 5999
Q ss_pred EecCCCEEEEecC------CCeEEEEecCCC
Q 012535 406 LSGDGGRVATGSY------SNLFRVFGCSEG 430 (461)
Q Consensus 406 ~s~~~~~l~s~~~------dg~i~iw~~~~~ 430 (461)
|+|++.++++++. ++.|.+|.+...
T Consensus 362 ~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 362 AHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred ecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 9996544444443 556888887643
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=256.13 Aligned_cols=302 Identities=12% Similarity=0.144 Sum_probs=215.4
Q ss_pred EEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccc-cCCCcchhhccccccccceEEEEE
Q 012535 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEIEEKINKIRW 120 (461)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~v~~ 120 (461)
.|+|+++.+++++ .|+... +.+..+ .+|. ..|++++|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g------------------------~~~~~~~~~h~------------~~V~~~~~ 71 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG------------------------KLIATLMENEP------------NSITSSAV 71 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC------------------------CEEEEECTTTT------------SCEEEEEE
T ss_pred hcCCccccccccc------cccccc------------------------eEEeeeccCCC------------CceEEEEE
Confidence 4788888888765 366332 355667 7888 78999999
Q ss_pred eecCCCcEEEEEeCCCeEEEEEccC---Ccee-EEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCC
Q 012535 121 CQSANSALYLLSTNDKTIKLWKVQE---KKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (461)
Q Consensus 121 ~p~~~~~~l~~~~~d~~i~vw~~~~---~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (461)
+| .++.+|++|+.||+|++||+.+ +... ...... ..+.|. +++|+|++..+
T Consensus 72 s~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-------h~~~v~-------~~~~~~~~~~l---------- 126 (437)
T 3gre_A 72 SP-GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-------CSSTVT-------QITMIPNFDAF---------- 126 (437)
T ss_dssp EC-SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-------CSSCEE-------EEEECTTSSEE----------
T ss_pred CC-CCCCEEEEecCCceEEEeECcccccCcccceeeecc-------CCCCEE-------EEEEeCCCCEE----------
Confidence 94 1678999999999999999976 3311 111111 133455 88999999885
Q ss_pred ccccccCCCcEEeeeeeccc---Ccccc--ceeeEee-ecc--cccceeeEE--eCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 197 SSFPPGGVSSLRLPVVVTSQ---ETNLV--AGCRRIY-AHA--HDYHINSIS--NNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~---~~~~~--~~~~~~~-~~~--~~~~v~~i~--~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
++++.|+.|++|| +... ..... ....+.+ ... +...+.++. +++++.+|+++ .|+.|++||+++.+
T Consensus 127 --~s~s~dg~i~vwd-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 127 --AVSSKDGQIIVLK-VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp --EEEETTSEEEEEE-EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred --EEEeCCCEEEEEE-eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 9999999999999 5311 11000 0111111 011 556677777 66889999999 89999999998665
Q ss_pred CceeeeccCCCCCCC--CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccc
Q 012535 266 QSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
.... +.+ |...|++++|+|++ .+|++|+.||.|++||+++++. +..+.. +|...
T Consensus 204 ~~~~--------~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~-----------~~~~~ 259 (437)
T 3gre_A 204 RLQI--------IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVL----IRSWSF-----------GDHAP 259 (437)
T ss_dssp EEEE--------EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEEBC-----------TTCEE
T ss_pred eeEE--------EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccE----EEEEec-----------CCCCc
Confidence 4432 333 78899999999998 9999999999999999998765 343331 12267
Q ss_pred eeEEEEcc----CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCcccccccccc-----------CCCccceeeEEEe
Q 012535 344 ISDIKFAR----NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-----------NDSIFDKFECCLS 407 (461)
Q Consensus 344 v~~l~~s~----~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s 407 (461)
|.+++|+| ++++|++|+ |+.|++||+++ ++.+..+.+|...+........ ......|.+++|+
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred eEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 99996664 688999986 69999999996 8888889888755432211110 0123346799999
Q ss_pred cCCCEEEEecCCCeEEEEecCCCCccceeeccC
Q 012535 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 440 (461)
++++|++|+.||.|++||+.+++.. ..+..+
T Consensus 339 -~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~ 369 (437)
T 3gre_A 339 -NDKILLTDEATSSIVMFSLNELSSS-KAVISP 369 (437)
T ss_dssp -TTEEEEEEGGGTEEEEEETTCGGGC-EEEECC
T ss_pred -CceEEEecCCCCeEEEEECCCcccc-eEEecc
Confidence 8899999999999999999988766 444443
No 87
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.9e-31 Score=240.62 Aligned_cols=301 Identities=11% Similarity=0.120 Sum_probs=194.7
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|.+.|++++|+|||++||+|+.+| ++||++.+.+.. ...+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-------------------------~~~~~----------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-------------------------MSQEM----------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-------------------------EEEEC-----------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-------------------------eeeec-----------
Confidence 46899999999999999999998775 789998754321 11111
Q ss_pred ccceEEEEEeecCCCcEE-EEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 112 EEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..+..+++.+. +..+ ++++.|++|++||+.+++........ ..+. ++.++++..
T Consensus 59 -~~~~~~~~~~~--~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~---------~~v~-------~v~~~~~~~------ 113 (355)
T 3vu4_A 59 -RHLSKVRMLHR--TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD---------APVK-------DLFLSREFI------ 113 (355)
T ss_dssp -SCCCEEEECTT--SSEEEEECSSTTEEEEEETTTTEEEEEEECS---------SCEE-------EEEECSSEE------
T ss_pred -CCeEEEEEcCC--CCEEEEEECCccEEEEEECCCCcEEEEEECC---------CceE-------EEEEcCCEE------
Confidence 23677788743 4455 56788899999999998876655432 2233 556665542
Q ss_pred cCCCCCccccccCCCcEEeeeeeccc-CccccceeeEeeecccccceeeEEeCCCCCEEEE--e-CCCeEEEEEccCCCC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQ-ETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS--A-DDLRINLWNLEISNQ 266 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~-~d~~i~iwd~~~~~~ 266 (461)
++ ..++.|++|| +... ... ..+ .. ....+++++ ..++. | .||.|++||+++...
T Consensus 114 --------~~-~~~~~i~i~d-~~~~~~~~------~~~-~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 114 --------VV-SYGDVISVFK-FGNPWKRI------TDD-IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp --------EE-EETTEEEEEE-SSTTCCBS------SCC-EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC---
T ss_pred --------EE-EEcCEEEEEE-CCCCceee------EEe-cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc
Confidence 22 3578999999 5433 111 111 11 233445666 55555 5 799999999986541
Q ss_pred ceee------eccC--CCCCCCCCcceEEEEEeCCCCCeEEEEecCCe-EEEEECCCcccccccccccc-cccCCCcccc
Q 012535 267 SFNI------VDVK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFE-EQEAPGTRSF 336 (461)
Q Consensus 267 ~~~~------~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~ 336 (461)
.... ..+. ...+.+|...|++++|+|++ ++|++|+.|++ |++||+++++. +..+. +
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~----~~~~~~g--------- 237 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL----VREFRRG--------- 237 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE----EEEEECT---------
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEcC---------
Confidence 1000 0000 02467899999999999999 99999999998 99999998875 44554 2
Q ss_pred ccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCC-CCeeEEee-----ccCcccccccc-ccCCCccceeeEEEec
Q 012535 337 FTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDS-GPVATFQV-----HEHLRPKLCDL-YENDSIFDKFECCLSG 408 (461)
Q Consensus 337 ~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~-~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~v~~~~~s~ 408 (461)
.|...|.+++|+|+|++|++++ |++|++||++... .....+.. +.......... ...........++|++
T Consensus 238 --~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 238 --LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp --TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred --CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 0337899999999999999976 6999999997521 11111111 00000000000 0000111123789999
Q ss_pred CCCEEEEecCCCeEEEEecCCCCc
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
|+++|++++.||.+++|++..++.
T Consensus 316 d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999999999999999999986543
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-31 Score=246.60 Aligned_cols=264 Identities=14% Similarity=0.196 Sum_probs=197.9
Q ss_pred ccccceEEEEEcCC----CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 33 ~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
.|...|++++|+|+ |++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------------------~~~~~~~~~-------- 115 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----------------------CIKHYVGHG-------- 115 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----------------------EEEEEESCC--------
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----------------------EeeeecCCC--------
Confidence 37788999999998 6799999999999999998764 445677888
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|.+++|+| .++.+|++++.||.|++||+++++......... ...+.+. +++|+|++..+
T Consensus 116 ----~~i~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~v~-------~~~~~~~~~~l-- 176 (366)
T 3k26_A 116 ----NAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-----GHRDEVL-------SADYDLLGEKI-- 176 (366)
T ss_dssp ----SCEEEEEECS-SCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-----SCSSCEE-------EEEECTTSSEE--
T ss_pred ----CcEEEEEECC-CCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-----cccCcee-------EEEECCCCCEE--
Confidence 7899999995 257799999999999999999887666542100 0123444 78999999885
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccce---------------------eeEeeecccccceeeEEeCCCCCE
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG---------------------CRRIYAHAHDYHINSISNNSDGET 247 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~i~~~~~~~~ 247 (461)
++++.|+.|++|| +.......... .......+|...|.+++|+ +++
T Consensus 177 ----------~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 177 ----------MSCGMDHSLKLWR-INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp ----------EEEETTSCEEEEE-SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred ----------EEecCCCCEEEEE-CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 9999999999999 54322110000 0001123488999999998 778
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccC------CCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCcccc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVK------PANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALC 318 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~ 318 (461)
|+++ .|+.|++||+++........... ...+..|...|++++|+|+ + ++|++|+.||.|++||+.+++..
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCc
Confidence 9998 89999999998665421111000 0235568888999999999 8 99999999999999999987653
Q ss_pred cccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEcc
Q 012535 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (461)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~ 370 (461)
......+..+. |...|.+++|+|++++|++++ ||.|++||+.
T Consensus 323 ~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 323 KAKCTTLTHHK----------CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GCEEEEECCTT----------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccceEEcccc----------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 32233444431 137899999999999999976 6999999985
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.1e-31 Score=263.15 Aligned_cols=246 Identities=15% Similarity=0.241 Sum_probs=190.9
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc-----eeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
+.|++|+|+| .++.+|++|+.|++|++|++.... .......| ...|. +++|+|+++.+
T Consensus 383 ~~V~~v~~~~-~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--------~~~v~-------~v~~s~~g~~l- 445 (694)
T 3dm0_A 383 DMVTAIATPI-DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--------SHFVE-------DVVLSSDGQFA- 445 (694)
T ss_dssp SCEEEEECCT-TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--------SSCEE-------EEEECTTSSEE-
T ss_pred ceeEEEEecC-CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--------CCcEE-------EEEECCCCCEE-
Confidence 8899999986 345799999999999999997642 22222222 23444 78999999985
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
++++.|+.|++|| +.. ..+.+.+ .+|...|.+++|+|+++.|+++ .|++|++||.... .
T Consensus 446 -----------~sgs~Dg~v~vwd-~~~------~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~ 505 (694)
T 3dm0_A 446 -----------LSGSWDGELRLWD-LAA------GVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-C 505 (694)
T ss_dssp -----------EEEETTSEEEEEE-TTT------TEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-E
T ss_pred -----------EEEeCCCcEEEEE-CCC------CcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-c
Confidence 9999999999999 422 2333443 7899999999999999999999 8999999998633 2
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCC-CeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
...+. ....+|...|.+++|+|++. ..|++++.|++|++||+++.+. ...+.. |.+.|+
T Consensus 506 ~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~------------h~~~v~ 565 (694)
T 3dm0_A 506 KYTIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RSTLAG------------HTGYVS 565 (694)
T ss_dssp EEEEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEEECC------------CSSCEE
T ss_pred ceeec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEEEcC------------CCCCEE
Confidence 22211 13456889999999999862 4799999999999999988764 344444 448899
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEE
Q 012535 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (461)
+++|+|+|++|++|+ |+.|++||+.+ ++.+..+..+.. |.+++|+|++.+|++++ |+.|+|
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~i 627 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKI 627 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEE
Confidence 999999999999976 69999999986 666655544322 34899999999888766 566999
Q ss_pred EecCCCCcc
Q 012535 425 FGCSEGSAE 433 (461)
Q Consensus 425 w~~~~~~~~ 433 (461)
||+.+++..
T Consensus 628 wd~~~~~~~ 636 (694)
T 3dm0_A 628 WDLESKSIV 636 (694)
T ss_dssp EETTTTEEE
T ss_pred EECCCCCCh
Confidence 999987654
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.6e-31 Score=244.25 Aligned_cols=268 Identities=11% Similarity=0.143 Sum_probs=201.5
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc------eeEEeeeecCCCccCCCC
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNG 165 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~ 165 (461)
....+.+|. ..|++++|+| .+|++++.||+|++|++.+++ .......+ ..
T Consensus 8 ~~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h--------~~ 63 (397)
T 1sq9_A 8 TANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--------KS 63 (397)
T ss_dssp EEEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--------TT
T ss_pred hhhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC--------CC
Confidence 445678888 8899999984 599999999999999999876 33333322 23
Q ss_pred CccccccccCcceeecC----C---CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccc-----c
Q 012535 166 PIFGSHVSAIPKSYMAN----G---GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-----D 233 (461)
Q Consensus 166 ~v~~~~~~~~~~~~~~~----g---~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-----~ 233 (461)
.+. +++|+|+ + ..+ ++++.|+.|++|+ +....... ...... +..| .
T Consensus 64 ~v~-------~~~~~~~~~~~g~~~~~l------------~s~~~dg~i~iw~-~~~~~~~~-~~~~~~-~~~~~~~~~~ 121 (397)
T 1sq9_A 64 GLH-------HVDVLQAIERDAFELCLV------------ATTSFSGDLLFYR-ITREDETK-KVIFEK-LDLLDSDMKK 121 (397)
T ss_dssp CEE-------EEEEEEEEETTTEEEEEE------------EEEETTSCEEEEE-EEECTTTC-CEEEEE-ECCSCTTGGG
T ss_pred cEE-------EEEEecccccCCccccEE------------EEEcCCCCEEEEE-ccCCcccc-ccccee-ecccccccCC
Confidence 455 7899999 8 775 9999999999999 54433210 111222 2566 5
Q ss_pred cceeeEEeC----CCCCE-EEEe-CCCeEEEEEccC------CCCce-----eeeccCCCCCCCCCcceEEEEEeCCCCC
Q 012535 234 YHINSISNN----SDGET-FISA-DDLRINLWNLEI------SNQSF-----NIVDVKPANMEDLTEVITSAEFHPTHCN 296 (461)
Q Consensus 234 ~~v~~i~~~----~~~~~-l~~~-~d~~i~iwd~~~------~~~~~-----~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 296 (461)
..|.+++|+ |+++. |+++ .|+.|++||++. ..... .+. ........|...|.+++|+|++
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-- 198 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ-GTVESPMTPSQFATSVDISERG-- 198 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE-EEECCSSSSCCCCCEEEECTTS--
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee-eeeccccCCCCCceEEEECCCc--
Confidence 899999999 99999 9998 899999999986 33332 110 0000014478899999999997
Q ss_pred eEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc---ccceeEEEEccCCCEEEEec-C---CeEEEEEc
Q 012535 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILSRD-Y---MTLKLWDI 369 (461)
Q Consensus 297 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~ 369 (461)
+|++++.||.|++||+++++. +..+... .+| ...|.+++|+|++++|++++ | +.|++||+
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~----~~~~~~~---------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRP----LYNFESQ---------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEE----EEEEECC---------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred eEEEEeCCCcEEEEECCCCce----eEEEecc---------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 999999999999999998765 4444440 013 37899999999999999975 6 89999999
Q ss_pred cCCCCCeeEEee-------------ccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcccee
Q 012535 370 NMDSGPVATFQV-------------HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT 436 (461)
Q Consensus 370 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 436 (461)
++ ++++..+.. |...+ .+++|+|++++|++++.||.|++||+.+++.. ..
T Consensus 266 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 328 (397)
T 1sq9_A 266 EF-GERIGSLSVPTHSSQASLGEFAHSSWV---------------MSLSFNDSGETLCSAGWDGKLRFWDVKTKERI-TT 328 (397)
T ss_dssp TT-CCEEEEECBC--------CCBSBSSCE---------------EEEEECSSSSEEEEEETTSEEEEEETTTTEEE-EE
T ss_pred CC-CcccceeccCcccccccccccccCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEEcCCCcee-EE
Confidence 96 788888887 66554 59999999999999999999999999988655 45
Q ss_pred ec
Q 012535 437 LE 438 (461)
Q Consensus 437 ~~ 438 (461)
+.
T Consensus 329 ~~ 330 (397)
T 1sq9_A 329 LN 330 (397)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=244.72 Aligned_cols=282 Identities=11% Similarity=0.142 Sum_probs=203.1
Q ss_pred CceeeeccccccCCcccccccccceEEEEEcCC---CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccc
Q 012535 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (461)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~---g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
...|++... +........|...|++++|+|+ |++|++|+.||.|++||+.+++.
T Consensus 46 v~iw~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------- 102 (357)
T 3i2n_A 46 IQLYEIQHG--DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------- 102 (357)
T ss_dssp EEEEEECSS--SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS---------------------
T ss_pred EEEEeCCCC--cccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc---------------------
Confidence 355777641 2122234579999999999998 79999999999999999987651
Q ss_pred cccccccCCCcchhhccccccccceEEEEEee----cCCCcEEEEEeCCCeEEEEEccCCc-eeEEeeeecCCCccCCCC
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNG 165 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p----~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~ 165 (461)
....+.+|. ..|.+++|.+ .+++.+|++++.||.|++||+.+++ .......+... ...
T Consensus 103 -~~~~~~~~~------------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~ 165 (357)
T 3i2n_A 103 -PVYSVKGHK------------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE----NKR 165 (357)
T ss_dssp -CSEEECCCS------------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS----CCC
T ss_pred -cEEEEEecc------------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC----CCC
Confidence 235677888 7799998764 3678899999999999999999875 34433322110 011
Q ss_pred CccccccccCcce----eecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEe
Q 012535 166 PIFGSHVSAIPKS----YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241 (461)
Q Consensus 166 ~v~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 241 (461)
.+. +++ |+|++..+ ++++.++.|++|| +.... .. ....|...|.+++|
T Consensus 166 ~v~-------~~~~~~~~~~~~~~l------------~~~~~d~~i~i~d-~~~~~------~~--~~~~~~~~v~~~~~ 217 (357)
T 3i2n_A 166 DCW-------TVAFGNAYNQEERVV------------CAGYDNGDIKLFD-LRNMA------LR--WETNIKNGVCSLEF 217 (357)
T ss_dssp CEE-------EEEEECCCC-CCCEE------------EEEETTSEEEEEE-TTTTE------EE--EEEECSSCEEEEEE
T ss_pred ceE-------EEEEEeccCCCCCEE------------EEEccCCeEEEEE-CccCc------ee--eecCCCCceEEEEc
Confidence 233 334 77888875 9999999999999 43321 11 12567889999999
Q ss_pred CC---CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCC-eEEEEecCCeEEEEECCCcc
Q 012535 242 NS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 242 ~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~~~~ 316 (461)
+| +++.|+++ .|+.|++||+++......+. . ..+.+|...|++++|+|++ . +|++++.||.|++||++.+.
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~--~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA-S--VSEKAHKSTVWQVRHLPQN-RELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE-E--EEEECCSSCEEEEEEETTE-EEEEEEEETTSEEEEEEEECCS
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCccccee-e--eccCCCcCCEEEEEECCCC-CcEEEEEeCCCcEEEeecCCCc
Confidence 99 89999999 89999999998654432210 0 0233789999999999998 6 89999999999999998754
Q ss_pred cccccccccccccC-------CCccccccccccceeEEEEccCCCEEE-Eec-CCeEEEEEccC
Q 012535 317 LCDTHSKLFEEQEA-------PGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINM 371 (461)
Q Consensus 317 ~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~l~~s~~g~~l~-s~~-d~~i~vwd~~~ 371 (461)
... ....... ......+.+|...|.+++|+|++++|+ +++ |+.|++||+.+
T Consensus 294 ~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 294 QRS----KKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CC------CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ccc----cccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 311 0000000 011233556778999999999999998 666 69999999975
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-30 Score=241.93 Aligned_cols=250 Identities=12% Similarity=0.182 Sum_probs=190.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|...|++++|+|++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 130 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~---------- 176 (401)
T 4aez_A 130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-----------------------KLRTMAGHQ---------- 176 (401)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-----------------------EEEEecCCC----------
Confidence 33488999999999999999999999999999998765 445677888
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccC-CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..|.+++|. +.++++++.||.|++||++. +........+ .+.+. +++|+|++..+
T Consensus 177 --~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~l--- 232 (401)
T 4aez_A 177 --ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGH--------SSEVC-------GLAWRSDGLQL--- 232 (401)
T ss_dssp --SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECC--------SSCEE-------EEEECTTSSEE---
T ss_pred --CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCC--------CCCee-------EEEEcCCCCEE---
Confidence 789999996 45999999999999999984 4434333332 23444 78999999885
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe---CCCeEEEEEccCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA---DDLRINLWNLEISN 265 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~---~d~~i~iwd~~~~~ 265 (461)
++++.|+.|++|| +.. ..+...+ ..|...|.+++|+|++. +++++ .|+.|++||+++++
T Consensus 233 ---------~s~~~d~~v~iwd-~~~------~~~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 233 ---------ASGGNDNVVQIWD-ARS------SIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp ---------EEEETTSCEEEEE-TTC------SSEEEEE-CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred ---------EEEeCCCeEEEcc-CCC------CCccEEe-cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999999999 433 2223333 68899999999999765 55554 49999999998665
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE--EecCCeEEEEECCCcccccccccccccccCCCccccccccccc
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
.... + .+...|.+++|+|++ ..|++ |+.||.|++||+.++.... ...+. +|...
T Consensus 296 ~~~~--------~-~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~--~~~~~------------~h~~~ 351 (401)
T 4aez_A 296 RVNT--------V-DAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTK--QVDIP------------AHDTR 351 (401)
T ss_dssp EEEE--------E-ECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEE--EEEEE------------CCSSC
T ss_pred EEEE--------E-eCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCcccee--EEEec------------CCCCC
Confidence 4432 2 256789999999999 88888 4489999999998765321 12233 34478
Q ss_pred eeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEE
Q 012535 344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF 379 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~ 379 (461)
|.+++|+|+|++|++++ ||.|++||+.. ++.+...
T Consensus 352 v~~~~~s~dg~~l~s~~~dg~i~iw~~~~-~~~~~~~ 387 (401)
T 4aez_A 352 VLYSALSPDGRILSTAASDENLKFWRVYD-GDHVKRP 387 (401)
T ss_dssp CCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCC-Ccccccc
Confidence 99999999999999976 69999999986 5555443
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-30 Score=241.49 Aligned_cols=275 Identities=12% Similarity=0.195 Sum_probs=203.8
Q ss_pred ccccccccCCCcchhhccccccccceEEEEEeecCCC-cEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcc
Q 012535 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (461)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (461)
++....+.+|. ..|++++|+| ++ .+|++|+.||.|++||+.+++.........+ .+.+.
T Consensus 63 ~~~~~~~~~h~------------~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h------~~~v~ 122 (383)
T 3ei3_B 63 YKLHRTASPFD------------RRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP------GDAIT 122 (383)
T ss_dssp CEEEEEECCCS------------SCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCST------TCBEE
T ss_pred cceEEeccCCC------------CCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCc------CCcee
Confidence 44556677887 8899999995 45 7999999999999999998877666543222 34455
Q ss_pred ccccccCcceeec-CCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEee--ecccccceeeEEeCCCC
Q 012535 169 GSHVSAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDG 245 (461)
Q Consensus 169 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~ 245 (461)
+++|+| ++..+ ++++.|+.|++|| +.. .....+ ...|...|.+++|+|++
T Consensus 123 -------~~~~~~~~~~~l------------~s~~~d~~i~iwd-~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 123 -------GMKFNQFNTNQL------------FVSSIRGATTLRD-FSG-------SVIQVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp -------EEEEETTEEEEE------------EEEETTTEEEEEE-TTS-------CEEEEEECCCCSSCCEEEEEEETTT
T ss_pred -------EEEeCCCCCCEE------------EEEeCCCEEEEEE-CCC-------CceEEEeccCCCCCCeEEEEECCCC
Confidence 789999 66764 9999999999999 432 111222 13455889999999999
Q ss_pred CEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccc
Q 012535 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (461)
Q Consensus 246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (461)
++|+++ .|+.|++||++ .+... .+.+|...|.+++|+|++..+|++++.|+.|++||+++.......+..
T Consensus 176 ~~l~~~~~d~~i~i~d~~-~~~~~--------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 246 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGLD-GHEIF--------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE 246 (383)
T ss_dssp TEEEEEETTSEEEEEETT-SCEEE--------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred CEEEEECCCCCEEEEECC-CCEEE--------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence 999999 89999999995 33222 356789999999999998339999999999999999874321111222
Q ss_pred cccccCCCccccccccccceeEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCcccc----ccccccCCCc
Q 012535 325 FEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK----LCDLYENDSI 398 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 398 (461)
+ +|...|.+++|+| ++++|++++ |+.|++||+++ ++.+..+.+|...... +...+.. .
T Consensus 247 ~-------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ 310 (383)
T 3ei3_B 247 M-------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHP--M 310 (383)
T ss_dssp E-------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECS--S
T ss_pred e-------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccC--C
Confidence 2 2447899999999 999999976 69999999996 7777888877643211 0000000 1
Q ss_pred cceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeecc
Q 012535 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 439 (461)
..+..++|+|++++ +|+.||.|++||+.+++.. ..+..
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-~~l~~ 348 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV-HQLRD 348 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE-EEECB
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCCCcee-eeecC
Confidence 12345778888877 8889999999999998765 45554
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-30 Score=242.83 Aligned_cols=256 Identities=14% Similarity=0.186 Sum_probs=191.2
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|.+.|++|+|+|+|++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~----------- 189 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS----------- 189 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC-----------
Confidence 3578899999999999999999999999999998765 456778888
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce-eEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..+.+++|+ +..+++|+.|+.+++|+...... ......+ ...+. .+.++|++..+
T Consensus 190 -~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h--------~~~~~-------~~~~~~~g~~l---- 245 (420)
T 4gga_A 190 -ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGH--------SQEVC-------GLRWAPDGRHL---- 245 (420)
T ss_dssp -SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECC--------SSCEE-------EEEECTTSSEE----
T ss_pred -CceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEeccc--------cccee-------eeeecCCCCee----
Confidence 779988886 56999999999999999886542 2333322 12233 67889999885
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEE--e-CCCeEEEEEccCCCC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFIS--A-DDLRINLWNLEISNQ 266 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~--~-~d~~i~iwd~~~~~~ 266 (461)
++++.|+.+++|+ ....+... ..... ...|...|.+++|+|.+. ++++ | .|+.|++||+.++..
T Consensus 246 --------~s~~~D~~v~i~~-~~~~~~~~--~~~~~-~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~ 313 (420)
T 4gga_A 246 --------ASGGNDNLVNVWP-SAPGEGGW--VPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313 (420)
T ss_dssp --------EEEETTSCEEEEE-SSCCSSCS--CCSEE-ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE
T ss_pred --------eeeeccccceEEe-eccccccc--eeeee-ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc
Confidence 9999999999999 43322211 11222 367889999999999754 4554 3 599999999987654
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe--cCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
...+ . +...+.++.|+|++ ..+++++ .|+.|+|||+.+++. +..+.+| .+.|
T Consensus 314 ~~~~--------~-~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~----v~~l~gH------------~~~V 367 (420)
T 4gga_A 314 LSAV--------D-AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAELKGH------------TSRV 367 (420)
T ss_dssp EEEE--------E-CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEEECCC------------SSCE
T ss_pred ceee--------c-cccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcE----EEEEcCC------------CCCE
Confidence 4322 2 45678999999998 6776654 799999999998775 4555555 4889
Q ss_pred eEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC
Q 012535 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
++++|+|||++|++|+ |++|+|||+.. ..+....+.+..
T Consensus 368 ~~l~~spdg~~l~S~s~D~tvriWdv~~-~~~~~~~~~~~~ 407 (420)
T 4gga_A 368 LSLTMSPDGATVASAAADETLRLWRCFE-LDPARRREREKA 407 (420)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSC-SSCC--------
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC-CCccchhhhccC
Confidence 9999999999999976 79999999975 555555554443
No 95
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-30 Score=239.66 Aligned_cols=262 Identities=13% Similarity=0.109 Sum_probs=196.7
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.+|++++|+ +++.+|++++.|+.|++||+.+++.........+ .+.+. +++|+|+++.+
T Consensus 9 ~~i~~~~~s--~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h------~~~v~-------~~~~~~~~~~l------ 67 (372)
T 1k8k_C 9 EPISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH------NGQVT-------GVDWAPDSNRI------ 67 (372)
T ss_dssp SCCCEEEEC--TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC------SSCEE-------EEEEETTTTEE------
T ss_pred CCeEEEEEC--CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC------CCccc-------EEEEeCCCCEE------
Confidence 779999999 5688999999999999999998863333222222 23444 78999999985
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++++.|+.|++|| +...+. .. ......|...|.+++|+|++++|+++ .|+.|++||++.........
T Consensus 68 ------~~~~~dg~i~vwd-~~~~~~----~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 68 ------VTCGTDRNAYVWT-LKGRTW----KP-TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ------EEEETTSCEEEEE-EETTEE----EE-EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ------EEEcCCCeEEEEE-CCCCee----ee-eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 9999999999999 532211 11 11126788999999999999999999 89999999998665321111
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc--cCCCccccccccccceeEEEE
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ--EAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~ 349 (461)
....+|...|.+++|+|++ .+|++++.||.|++||++............... ........+.+|...|.+++|
T Consensus 136 ----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (372)
T 1k8k_C 136 ----HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210 (372)
T ss_dssp ----EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred ----eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence 0235678999999999998 999999999999999986432110000000000 001112234456689999999
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+|++++|++++ |+.|++||+++ ++++..+..|...+ .+++|+|++++|++| .|+.|++|++.
T Consensus 211 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 211 SANGSRVAWVSHDSTVCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 99999999976 69999999996 88888998887654 499999999999888 89999999998
Q ss_pred C
Q 012535 429 E 429 (461)
Q Consensus 429 ~ 429 (461)
+
T Consensus 274 ~ 274 (372)
T 1k8k_C 274 S 274 (372)
T ss_dssp T
T ss_pred C
Confidence 7
No 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-30 Score=234.17 Aligned_cols=255 Identities=16% Similarity=0.199 Sum_probs=195.5
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeE---EeeeecCCCccCCCCCc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK---VFDWNVHPEKAAGNGPI 167 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~~v 167 (461)
.+..+|+||. +.|++|+|+|. ++++|++|+.|++|+|||+...+... ......+ ...|
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h------~~~V 89 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH------SHFV 89 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC------SSCE
T ss_pred EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC------CCCE
Confidence 3556799999 88999999963 35799999999999999998654221 1111111 2345
Q ss_pred cccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCE
Q 012535 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (461)
. +++|+|+++.+ ++++.|+.|++|+ ... ...... ...+...+..+.++++++.
T Consensus 90 ~-------~~~~s~dg~~l------------~s~~~d~~i~~~~-~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~ 142 (340)
T 4aow_A 90 S-------DVVISSDGQFA------------LSGSWDGTLRLWD-LTT------GTTTRR-FVGHTKDVLSVAFSSDNRQ 142 (340)
T ss_dssp E-------EEEECTTSSEE------------EEEETTSEEEEEE-TTT------TEEEEE-EECCSSCEEEEEECTTSSC
T ss_pred E-------EEEECCCCCEE------------EEEcccccceEEe-ecc------cceeee-ecCCCCceeEEEEeecCcc
Confidence 5 78999999985 9999999999999 322 112222 2566678888999999999
Q ss_pred EEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCC-CeEEEEecCCeEEEEECCCccccccccccc
Q 012535 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
|+++ .|+.+++||......... ...+|...+..++|++++. .++++++.|+.|++||+++++. +..+
T Consensus 143 l~s~s~d~~~~~~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~ 211 (340)
T 4aow_A 143 IVSGSRDKTIKLWNTLGVCKYTV-------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNH 211 (340)
T ss_dssp EEEEETTSCEEEECTTSCEEEEE-------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEE
T ss_pred ceeecCCCeEEEEEeCCCceEEE-------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce----eeEe
Confidence 9999 899999999874433221 4567899999999998753 4678999999999999998765 3444
Q ss_pred ccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeE
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (461)
..| ...|++++|+|++++|++|+ |+.|++||++. .+++..+..+.. |..+
T Consensus 212 ~~h------------~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~ 262 (340)
T 4aow_A 212 IGH------------TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDI----------------INAL 262 (340)
T ss_dssp CCC------------SSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECSSC----------------EEEE
T ss_pred cCC------------CCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCCce----------------EEee
Confidence 444 47899999999999999976 69999999996 777777766543 2489
Q ss_pred EEecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 405 CLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
+|+|++.++ +++.|+.|++||++++..
T Consensus 263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 263 CFSPNRYWL-CAATGPSIKIWDLEGKII 289 (340)
T ss_dssp EECSSSSEE-EEEETTEEEEEETTTTEE
T ss_pred ecCCCCcee-eccCCCEEEEEECCCCeE
Confidence 999987655 556799999999987643
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=8e-32 Score=248.62 Aligned_cols=257 Identities=8% Similarity=0.054 Sum_probs=186.1
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc--eeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
.+|++++|+ +++.+|++++.|+.|++|++.++. .......+ .+.+. +++|+|+++.+
T Consensus 12 ~~v~~~~~s--~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h--------~~~v~-------~~~~s~~~~~l---- 70 (377)
T 3dwl_C 12 KPSYEHAFN--SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH--------DKIVT-------CVDWAPKSNRI---- 70 (377)
T ss_dssp SCCSCCEEC--SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC--------SSCEE-------EEEECTTTCCE----
T ss_pred CcEEEEEEC--CCCCEEEEecCCCEEEEEEccCCceEEEEEEecC--------CceEE-------EEEEeCCCCEE----
Confidence 669999999 567899999999999999999873 33333222 33455 78999999885
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC--c
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ--S 267 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~ 267 (461)
++++.|+.|++|| +.... ....... +.+|...|.+++|+|++++|+++ .|+.|++||+++.+. .
T Consensus 71 --------~s~s~d~~v~vwd-~~~~~---~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 71 --------VTCSQDRNAYVYE-KRPDG---TWKQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp --------EEEETTSSEEEC----------CCCCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred --------EEEeCCCeEEEEE-cCCCC---ceeeeeE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 9999999999999 54322 1112222 36899999999999999999999 899999999986653 1
Q ss_pred eeeeccCCCCCCC-CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc--CCCccccccccccce
Q 012535 268 FNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE--APGTRSFFTEIIASI 344 (461)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v 344 (461)
.. .+.+ |...|++++|+|++ ++|++++.|+.|++||++................ .......+ +|...|
T Consensus 138 ~~-------~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 208 (377)
T 3dwl_C 138 SK-------HLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV 208 (377)
T ss_dssp CE-------EECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred ee-------EeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence 11 3445 89999999999998 9999999999999999975432111000000000 00011123 677899
Q ss_pred eEEEEccCCCEEEEec-CCeEEEEEccCCCCC----eeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
.+++|+|+|++|++++ |+.|++||+.. ++. +..+.+|...+ .+++|+|++++|++|+.|
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNY 272 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSS
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCC
Confidence 9999999999999976 69999999996 666 77888888765 499999999999999877
Q ss_pred CeEEEEecCC
Q 012535 420 NLFRVFGCSE 429 (461)
Q Consensus 420 g~i~iw~~~~ 429 (461)
+.+ +|+...
T Consensus 273 ~~~-~~~~~~ 281 (377)
T 3dwl_C 273 SPI-LLQGNE 281 (377)
T ss_dssp SEE-EECCCC
T ss_pred cEE-EEEeCC
Confidence 766 666653
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8e-30 Score=234.28 Aligned_cols=274 Identities=13% Similarity=0.180 Sum_probs=212.9
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (461)
....+.+|. ..|++++|+ +++.+|++++.||.|++||+.+++.......+ .+.+.
T Consensus 24 ~~~~l~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h--------~~~v~--- 78 (369)
T 3zwl_B 24 KAIKLTGHE------------RPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNGERLGTLDGH--------TGTIW--- 78 (369)
T ss_dssp EEEEEECCS------------SCEEEEEEC--TTSCEEEEEESSSCEEEEETTTCCEEEEECCC--------SSCEE---
T ss_pred ccEEEEEee------------ceEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc--------CCcEE---
Confidence 344578888 889999999 56889999999999999999988877665543 23455
Q ss_pred cccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe
Q 012535 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (461)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (461)
+++|+|+++.+ ++++.|+.|++|| +.. ..+...+ .+...|.+++|+|++++++++
T Consensus 79 ----~~~~~~~~~~l------------~s~~~dg~i~iwd-~~~------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 79 ----SIDVDCFTKYC------------VTGSADYSIKLWD-VSN------GQCVATW--KSPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp ----EEEECTTSSEE------------EEEETTTEEEEEE-TTT------CCEEEEE--ECSSCEEEEEECTTSSEEEEE
T ss_pred ----EEEEcCCCCEE------------EEEeCCCeEEEEE-CCC------CcEEEEe--ecCCCeEEEEEccCCCEEEEe
Confidence 78999999885 9999999999999 432 2233333 277899999999999999998
Q ss_pred -CC-----CeEEEEEccCCCCceeeeccCC---CCCCCCCc--ceEEEEEeCCCCCeEEEEecCCeEEEEECCC-ccccc
Q 012535 252 -DD-----LRINLWNLEISNQSFNIVDVKP---ANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCD 319 (461)
Q Consensus 252 -~d-----~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 319 (461)
.+ +.|++||++.......+..... ..+..|.. .+.+++|+|++ ++|++++.||.|++||+++ ...
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~-- 210 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEY-- 210 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEE--
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEe--
Confidence 77 9999999986654332211110 12333444 89999999998 8999999999999999988 333
Q ss_pred ccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCc
Q 012535 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (461)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (461)
+..+..+. ..|.+++|+|++++|++++ |+.|++||+++ ++.+..+. +...+
T Consensus 211 --~~~~~~~~------------~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~~------------ 262 (369)
T 3zwl_B 211 --VDSIDLHE------------KSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-TDCPL------------ 262 (369)
T ss_dssp --EEEEECCS------------SCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE-CSSCE------------
T ss_pred --EEEEecCC------------CceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec-CCCCc------------
Confidence 34444443 7899999999999999976 69999999996 77777776 33332
Q ss_pred cceeeEEEecCCCEEEEecCCC--------------eEEEEecCCCCccceeeccCCCCCcccccc
Q 012535 399 FDKFECCLSGDGGRVATGSYSN--------------LFRVFGCSEGSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
..++|+|+++++++++.++ .+++||+.+++.. ..+..|..++......
T Consensus 263 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s 324 (369)
T 3zwl_B 263 ---NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-GRVQGHFGPLNTVAIS 324 (369)
T ss_dssp ---EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE-EEEECCSSCEEEEEEC
T ss_pred ---eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch-hheecccCcEEEEEEC
Confidence 4899999999999999988 8999999988765 5677777766554443
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.8e-30 Score=228.56 Aligned_cols=264 Identities=14% Similarity=0.187 Sum_probs=205.9
Q ss_pred cccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCcc
Q 012535 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (461)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (461)
.++....+.+|. ..|++++| |. +.+|++++.||.|++||+.+++.......+ .+.+.
T Consensus 7 ~~~~~~~l~~h~------------~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~--------~~~v~ 63 (313)
T 3odt_A 7 GYQLSATLKGHD------------QDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQWLGTVVYTG--------QGFLN 63 (313)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE-EE--TTEEEEEETTSEEEEEEESSSEEEEEEEEC--------SSCEE
T ss_pred cHHHHHHhhCCC------------CCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCCEEEEEeecC--------CccEE
Confidence 345677889998 88999999 53 669999999999999999888766665554 23344
Q ss_pred ccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE
Q 012535 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (461)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 248 (461)
+++|+|++..+ ++++.|+.+++|+ +..... ...... +.+|...|.+++| +++.+
T Consensus 64 -------~~~~~~~~~~l------------~~~~~dg~i~~~~-~~~~~~---~~~~~~-~~~~~~~i~~~~~--~~~~l 117 (313)
T 3odt_A 64 -------SVCYDSEKELL------------LFGGKDTMINGVP-LFATSG---EDPLYT-LIGHQGNVCSLSF--QDGVV 117 (313)
T ss_dssp -------EEEEETTTTEE------------EEEETTSCEEEEE-TTCCTT---SCC-CE-ECCCSSCEEEEEE--ETTEE
T ss_pred -------EEEECCCCCEE------------EEecCCCeEEEEE-eeecCC---CCcccc-hhhcccCEEEEEe--cCCEE
Confidence 78999999985 9999999999999 554332 222233 3789999999999 57788
Q ss_pred EEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC-CCCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 249 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
+++ .|+.|++||. ..... .+..|...+.+++|.| ++ .++++++.||.|++||.... ...+.
T Consensus 118 ~~~~~d~~i~~~d~--~~~~~--------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~ 180 (313)
T 3odt_A 118 ISGSWDKTAKVWKE--GSLVY--------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV------IKTFS 180 (313)
T ss_dssp EEEETTSEEEEEET--TEEEE--------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEE------EEEEC
T ss_pred EEEeCCCCEEEEcC--CcEEE--------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCce------EEEEe
Confidence 888 8999999992 22221 3556889999999998 66 89999999999999994332 23333
Q ss_pred cccCCCccccccccccceeEEEEccCCCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEE
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
.. |...+.+++|+|++. ++++ .++.|++||+++ ++++..+..|...+ .+++
T Consensus 181 ~~-----------~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~ 232 (313)
T 3odt_A 181 GI-----------HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESFV---------------YCIK 232 (313)
T ss_dssp SS-----------CSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEE
T ss_pred cc-----------CcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCceE---------------EEEE
Confidence 31 237899999999998 5555 579999999996 88899999888765 4999
Q ss_pred EecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcccc
Q 012535 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFL 448 (461)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 448 (461)
|+|++ .|++++.||.|++||+.+++.. ..+..+..++....
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENGSLK-QVITLPAISIWSVD 273 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTCCEE-EEEECSSSCEEEEE
T ss_pred EecCC-CEEEEecCCEEEEEECCCCcee-EEEeccCceEEEEE
Confidence 99999 6889999999999999998765 56666665554433
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=3.8e-31 Score=242.12 Aligned_cols=251 Identities=14% Similarity=0.173 Sum_probs=178.1
Q ss_pred ccccceEEEEEcCCCCEEEEe-----------ecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccc---ccC
Q 012535 33 QEVDIISAIEFDKSGDHLATG-----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE---FQS 98 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg-----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 98 (461)
.|.+.|.+++++ ++.+++| +.|+.+++|++...... .+.... ...
T Consensus 71 ~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~ 129 (365)
T 4h5i_A 71 DNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ-------------------LEFLTSVDFDAS 129 (365)
T ss_dssp TTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTE-------------------EEEEEEECSSCC
T ss_pred CCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCce-------------------EEEeeeeceeec
Confidence 577788888776 4566665 45778999998765421 001111 111
Q ss_pred CCcchhhccccccccceEEEEEeecCCCcEEEEEe--CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST--NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 99 h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
+. .+..+.+++|+ +||+++++++ .|++|+|||+++++....... .+.|. +
T Consensus 130 ~~----------~~~~~~~v~fS--pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---------~~~V~-------~ 181 (365)
T 4h5i_A 130 TN----------ADDYTKLVYIS--REGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---------RGEVK-------D 181 (365)
T ss_dssp CC----------TTCCEEEEEEC--TTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---------SSCCC-------E
T ss_pred CC----------cccCEEEEEEc--CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---------CCceE-------E
Confidence 11 11568999999 5688877654 789999999999887766542 22344 8
Q ss_pred ceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC-
Q 012535 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL- 254 (461)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~- 254 (461)
++|+|+|+.+ ++++.+ .+.+|+ .... .........+|...|.+++|+|+++.++++ .|+
T Consensus 182 v~fspdg~~l------------~s~s~~-~~~~~~-~~~~-----~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 182 LHFSTDGKVV------------AYITGS-SLEVIS-TVTG-----SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp EEECTTSSEE------------EEECSS-CEEEEE-TTTC-----CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred EEEccCCceE------------Eeccce-eEEEEE-eccC-----cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 8999999985 666654 555555 2111 111222236788999999999999999988 555
Q ss_pred ---eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCC
Q 012535 255 ---RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 255 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
.+++|++......... ...+.+|...|++++|+|++ ++||+|+.|++|+|||+++++. +..+
T Consensus 243 ~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~----~~~~------ 307 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLR----SKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSM----SKIF------ 307 (365)
T ss_dssp CCEEEEEEEEETTEEEEEE----EEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEE------
T ss_pred ceeEEeecccccceeccee----eeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcE----EEEe------
Confidence 6788888754332111 02456788999999999999 9999999999999999998875 3332
Q ss_pred CccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccC
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
+.+|...|++++|+|||++||+|+ |++|+|||+..
T Consensus 308 -----~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 -----KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -----TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred -----cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 233458999999999999999987 69999999964
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=6.9e-30 Score=232.34 Aligned_cols=261 Identities=10% Similarity=0.075 Sum_probs=198.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc----eeEEeeeecCCCccCCCCCccccccccCcceeecCCC-ccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG-CGE 187 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~-~~~ 187 (461)
+.|.+++|+| ++.+|++++.|+.|++|++.++. ..... .+ .+.+. +++|+|+++ .+
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~--------~~~v~-------~~~~~~~~~~~l- 72 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RY--------KHPLL-------CCNFIDNTDLQI- 72 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-EC--------SSCEE-------EEEEEESSSEEE-
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccceeee-ec--------CCceE-------EEEECCCCCcEE-
Confidence 8899999995 57799999999999999998876 32222 11 23344 789999999 75
Q ss_pred ccccCCCCCccccccCCCcEEeeeee-cccCccccceeeEeeecc--cccceeeEEeCCCCCEEEEe-CCCeEEEEEccC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVV-TSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (461)
++++.++.|++|| + ..... .. +.+ |...|.+++|+| ++.|+++ .|+.|++||+++
T Consensus 73 -----------~~~~~dg~i~~wd-~~~~~~~-------~~-~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 73 -----------YVGTVQGEILKVD-LIGSPSF-------QA-LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp -----------EEEETTSCEEEEC-SSSSSSE-------EE-CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred -----------EEEcCCCeEEEEE-eccCCce-------Ee-ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence 9999999999999 4 33211 22 367 999999999999 9999998 899999999985
Q ss_pred ---------CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC-cccccccccccccccCCCc
Q 012535 264 ---------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGT 333 (461)
Q Consensus 264 ---------~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 333 (461)
.+... .+. |...|.+++|+|++ +++++.|+.|++||+++ ..... ....
T Consensus 132 ~~~~~~~~~~~~~~--------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~--~~~~-------- 189 (342)
T 1yfq_A 132 YGDGVIAVKNLNSN--------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG--TIEE-------- 189 (342)
T ss_dssp HTTBCEEEEESCSS--------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC--EEEE--------
T ss_pred cccccccccCCeee--------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc--eeee--------
Confidence 33221 233 88899999999875 99999999999999987 43210 1111
Q ss_pred cccccccccceeEEEEcc-CCCEEEEec-CCeEEEEEccCC-----CCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 334 RSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 334 ~~~~~~h~~~v~~l~~s~-~g~~l~s~~-d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
..|...+.+++|+| +++++++++ +|.|++|+++.. .+....+..|...... ......|.+++|
T Consensus 190 ----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~ 259 (342)
T 1yfq_A 190 ----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD------TNLAYPVNSIEF 259 (342)
T ss_dssp ----CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC------CSSCCCEEEEEE
T ss_pred ----cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc------cccceeEEEEEE
Confidence 12336799999999 999999976 599999999863 2788888888652100 011123469999
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCCccceeeccC-CCCCcc
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMSL 446 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~ 446 (461)
+|++++|++|+.||.|++||+.+++.. ..+..| ..++..
T Consensus 260 s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 260 SPRHKFLYTAGSDGIISCWNLQTRKKI-KNFAKFNEDSVVK 299 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTEEE-EECCCCSSSEEEE
T ss_pred cCCCCEEEEecCCceEEEEcCccHhHh-hhhhcccCCCceE
Confidence 999999999999999999999988765 556666 655543
No 102
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1.2e-29 Score=225.71 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=162.0
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|++++|+ +++++|++|+.|++|++|++..+....
T Consensus 10 ~~V~~~~~s--~~g~~las~s~D~~v~iw~~~~~~~~~------------------------------------------ 45 (297)
T 2pm7_B 10 EMIHDAVMD--YYGKRMATCSSDKTIKIFEVEGETHKL------------------------------------------ 45 (297)
T ss_dssp SCEEEEEEC--TTSSEEEEEETTSCEEEEEBCSSCBCC------------------------------------------
T ss_pred CceEEEEEC--CCCCEEEEEeCCCEEEEEecCCCCcEE------------------------------------------
Confidence 889999999 668899999999999999986431100
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
... +.+|...|.+++|+++ +++|++| .|++|++||++++.....
T Consensus 46 --------------------------------~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 46 --------------------------------IDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI 92 (297)
T ss_dssp --------------------------------CEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred --------------------------------EEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence 001 3689999999999864 8899999 899999999986532111
Q ss_pred eeccCCCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
..+.+|...|.+++|+|+ + .+|++++.|+.|++||++...... ... +.+|...|.++
T Consensus 93 ------~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~------------~~~h~~~v~~~ 151 (297)
T 2pm7_B 93 ------AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PII------------IDAHAIGVNSA 151 (297)
T ss_dssp ------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEE------------EECCSSCEEEE
T ss_pred ------EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eee------------eecccCccceE
Confidence 135668999999999997 6 899999999999999998753210 122 33455889999
Q ss_pred EEccC-------------CCEEEEec-CCeEEEEEccCCCC----CeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 348 KFARN-------------GRHILSRD-YMTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 348 ~~s~~-------------g~~l~s~~-d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
+|+|+ +++|++|+ |+.|++||++. ++ ....+.+|...+ .+++|+|+
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v~~sp~ 215 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDVAWSPT 215 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEEEECCC
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEEEECCC
Confidence 99997 57899876 69999999985 44 456777888765 49999999
Q ss_pred C---CEEEEecCCCeEEEEecCCCC
Q 012535 410 G---GRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 410 ~---~~l~s~~~dg~i~iw~~~~~~ 431 (461)
+ .+|++|+.|+.|+|||+.++.
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCceEEEEEECCCcEEEEEeCCCC
Confidence 5 899999999999999998753
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-30 Score=234.21 Aligned_cols=273 Identities=9% Similarity=0.019 Sum_probs=192.6
Q ss_pred EEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEE
Q 012535 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120 (461)
Q Consensus 41 ~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~ 120 (461)
.++.+++.+|++|+.||.|++||+.+++.. ..+. . ..|.++.|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~~~ 84 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTGGE 84 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTTCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceeeee
Confidence 344568889999999999999999877532 2222 1 44778888
Q ss_pred eecCCCcEEEEEeCCCeEEEEEccCC---------ceeEEeeeecCCCccCCCCCccccccccCcceeec--CCCccccc
Q 012535 121 CQSANSALYLLSTNDKTIKLWKVQEK---------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERN 189 (461)
Q Consensus 121 ~p~~~~~~l~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~g~~~~~~ 189 (461)
+|. +++++.|++|++|+.... +........ ..+.+. +++|+| ++..+
T Consensus 85 ~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~-------~~~~~~~~~~~~l--- 142 (343)
T 3lrv_A 85 HPA-----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD-------SANEII-------YMYGHNEVNTEYF--- 142 (343)
T ss_dssp CCS-----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC-------CSSCEE-------EEECCC---CCEE---
T ss_pred CCc-----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC-------CCCCEE-------EEEcCCCCCCCEE---
Confidence 742 999999999999987642 212211111 123344 788999 88875
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (461)
++++.|+.|++|| +... .+.......|...+.+++|+|++.+|++| .|+.|++||+++.+...
T Consensus 143 ---------~s~s~dg~i~~wd-~~~~------~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~ 206 (343)
T 3lrv_A 143 ---------IWADNRGTIGFQS-YEDD------SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS 206 (343)
T ss_dssp ---------EEEETTCCEEEEE-SSSS------CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC
T ss_pred ---------EEEeCCCcEEEEE-CCCC------cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc
Confidence 9999999999999 4332 22222224556689999999999999998 89999999999776542
Q ss_pred eeeccCCCCCCC-CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce--e
Q 012535 269 NIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI--S 345 (461)
Q Consensus 269 ~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~ 345 (461)
. .+.. |...|++++|+|++ .+|++++ |+.|++||+++... +..+.... .|...+ .
T Consensus 207 ~-------~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~----~~~~~~~~---------~~~~~~~~~ 264 (343)
T 3lrv_A 207 S-------RFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVG----TLAYPTYT---------IPEFKTGTV 264 (343)
T ss_dssp E-------ECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTT----CBSSCCCB---------C-----CCE
T ss_pred c-------EEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCc----ceeecccc---------cccccccce
Confidence 2 2455 89999999999999 8999999 55999999998764 22222210 011223 4
Q ss_pred EEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec---CCCEEEEecCCC
Q 012535 346 DIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSN 420 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg 420 (461)
+++|+|+|++|++++ ++.|++|++....+.... .. +..++|++ +.+.|++++.||
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DE---------------ESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EE---------------EEECCC----CCCCEEEEEEETT
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cC---------------ceeEecCccccccceeEEEecCC
Confidence 699999999999943 799999999753332222 11 13677888 888999999999
Q ss_pred eEEEEecCCC
Q 012535 421 LFRVFGCSEG 430 (461)
Q Consensus 421 ~i~iw~~~~~ 430 (461)
.+.++-....
T Consensus 325 ~~~~~~~~~~ 334 (343)
T 3lrv_A 325 GIAAILKTND 334 (343)
T ss_dssp EEEEEEECSS
T ss_pred ceEEEEecCC
Confidence 9998865543
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.7e-29 Score=236.22 Aligned_cols=286 Identities=8% Similarity=-0.010 Sum_probs=212.5
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|.
T Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~------------------~~~~~~~~~~~~------------ 169 (433)
T 3bws_A 120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV------------------RLSPPEKYKKKL------------ 169 (433)
T ss_dssp ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE------------------EECCCHHHHTTC------------
T ss_pred cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe------------------eecCcccccccC------------
Confidence 34456779999998888888889999999999876532 000111345676
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.+++|+ +++.++++++.|+.|++||+++++.......+. ..+. +++|+|+++.+
T Consensus 170 ~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~l------ 226 (433)
T 3bws_A 170 GFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATVDLTG--------KWSK-------ILLYDPIRDLV------ 226 (433)
T ss_dssp CEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS--------SSEE-------EEEEETTTTEE------
T ss_pred CceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEEcCCC--------CCee-------EEEEcCCCCEE------
Confidence 679999997 557899999999999999999887666554321 1233 78999999875
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C--------CCeEEEEEccC
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--------DLRINLWNLEI 263 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~--------d~~i~iwd~~~ 263 (461)
++++..++.|++|| +.. ......+ .. ...+.+++|+|+++.++++ . |+.|++||+++
T Consensus 227 -----~~~~~~~~~i~~~d-~~~------~~~~~~~-~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 227 -----YCSNWISEDISVID-RKT------KLEIRKT-DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp -----EEEETTTTEEEEEE-TTT------TEEEEEC-CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred -----EEEecCCCcEEEEE-CCC------CcEEEEe-cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 35666899999999 432 2222222 22 3568999999999988876 3 77999999986
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
++... ...+...+.+++|+|++..++++++.|+.|++||+.+++. +..+... ..
T Consensus 293 ~~~~~---------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~~~-------------~~ 346 (433)
T 3bws_A 293 EKLID---------TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKSIPVF-------------DK 346 (433)
T ss_dssp TEEEE---------EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEEEECS-------------SS
T ss_pred CcEEe---------eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEEecCC-------------CC
Confidence 54322 1235567899999999844667778999999999998764 2333321 56
Q ss_pred eeEEEEccCCCEEEEecC----------------CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 344 ISDIKFARNGRHILSRDY----------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~~d----------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
+.+++|+|+|++|++++. |.|++||+.+ ++.+..+..+... .+++|+
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s 409 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVS 409 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEEC
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEc
Confidence 899999999998887642 4999999986 7777777654322 489999
Q ss_pred cCCCEEEEec-CCCeEEEEecC
Q 012535 408 GDGGRVATGS-YSNLFRVFGCS 428 (461)
Q Consensus 408 ~~~~~l~s~~-~dg~i~iw~~~ 428 (461)
|++++|++++ .|+.|++|+++
T Consensus 410 ~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 410 PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTSCEEEEEETTTTEEEEEEET
T ss_pred CCCCEEEEEECCCCeEEEEEec
Confidence 9999998776 49999999986
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=230.12 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=177.4
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccC
Q 012535 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (461)
Q Consensus 124 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (461)
.++.++++|+.||+|++||+.+++........ .+. ++.++|+ + ++++.
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~----------~v~-------~~~~~~~---~------------~s~s~ 93 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTP----------NPR-------TGGEHPA---I------------ISRGP 93 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEE----------CCC-------TTCCCCS---E------------EEECS
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecC----------Cce-------eeeeCCc---e------------EEecC
Confidence 35679999999999999999988766655421 122 5566666 3 99999
Q ss_pred CCcEEeeeeecccC---ccccceeeEeeecccccceeeEEeCC--CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCC
Q 012535 204 VSSLRLPVVVTSQE---TNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (461)
Q Consensus 204 ~~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (461)
|+.|++|+ ..... ........+.+..+|...|.+++|+| ++++|+++ .|+.|++||+++++. ....
T Consensus 94 D~~i~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~------ 165 (343)
T 3lrv_A 94 CNRLLLLY-PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVH------ 165 (343)
T ss_dssp TTEEEEEE-TTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEE------
T ss_pred CCeEEEEE-ccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEE------
Confidence 99999998 32110 00112223344357778999999999 99999998 899999999986554 2221
Q ss_pred CCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEE
Q 012535 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (461)
Q Consensus 278 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~ 357 (461)
...+...+++++|+|++ .+|++|+.||.|++||+++++.. ...+.. +|...|++++|+|+|.+|+
T Consensus 166 ~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~---~~~~~~-----------~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQA---SSRFPV-----------DEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp CCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSC---CEECCC-----------CTTSCEEEEEECTTSSEEE
T ss_pred ecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCC---ccEEec-----------cCCCCEEEEEEeCCCCEEE
Confidence 12356679999999999 99999999999999999987642 133433 1448899999999999999
Q ss_pred EecCCeEEEEEccCCCCCeeEEee---ccCccccccccccCCCccceeeEEEecCCCEEEEecC-CCeEEEEecCCCCc
Q 012535 358 SRDYMTLKLWDINMDSGPVATFQV---HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSA 432 (461)
Q Consensus 358 s~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~ 432 (461)
+++++.|++||+++ .+.+..+.. |...+.. .+++|+|++++|++++. |+.|+||++..+..
T Consensus 231 s~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 231 VECDQTVVCFDLRK-DVGTLAYPTYTIPEFKTGT-------------VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEESSBEEEEETTS-STTCBSSCCCBC-----CC-------------EEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEeCCeEEEEEcCC-CCcceeecccccccccccc-------------eEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 98888999999996 555554443 2222210 25999999999999988 99999999976543
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=7.6e-29 Score=229.86 Aligned_cols=277 Identities=12% Similarity=0.119 Sum_probs=206.3
Q ss_pred CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCc
Q 012535 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (461)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (461)
.++++++.|+.|++||+.+++ ....+..|. .+.+++|+ +++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-----------------------~~~~~~~~~-------------~~~~~~~s--~dg~ 44 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-----------------------VTATIPVGS-------------NPMGAVIS--PDGT 44 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-----------------------EEEEEECSS-------------SEEEEEEC--TTSS
T ss_pred EEEEEcCCCCEEEEEECCCCe-----------------------EEEEeecCC-------------CcceEEEC--CCCC
Confidence 468889999999999998765 334455553 38999999 5676
Q ss_pred EE-EEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCc
Q 012535 128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (461)
Q Consensus 128 ~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (461)
++ ++++.|++|++||+.+++.......+. .+. +++|+|+++.+ ++++..++.
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~v~-------~~~~spdg~~l-----------~~~~~~~~~ 97 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIATVPAGS---------SPQ-------GVAVSPDGKQV-----------YVTNMASST 97 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE-----------EEEETTTTE
T ss_pred EEEEECCCCCeEEEEECCCCeEEEEEECCC---------Ccc-------ceEECCCCCEE-----------EEEECCCCE
Confidence 66 566799999999999988766655432 233 78999999975 356667899
Q ss_pred EEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE-EEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcc
Q 012535 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (461)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (461)
|++|| +.. .+....+ . +...+.+++|+|+++.+ +++ .++.|++||+++.+.... +. ....
T Consensus 98 v~v~d-~~~------~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------~~-~~~~ 159 (391)
T 1l0q_A 98 LSVID-TTS------NTVAGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT--------VS-VGRS 159 (391)
T ss_dssp EEEEE-TTT------TEEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------EE-CCSS
T ss_pred EEEEE-CCC------CeEEEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--------Ee-cCCC
Confidence 99999 432 2222222 2 33568999999999977 566 699999999986543322 22 2345
Q ss_pred eEEEEEeCCCCCeE-EEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec---
Q 012535 285 ITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--- 360 (461)
Q Consensus 285 v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--- 360 (461)
+.+++|+|++ +.| ++++.++.|++||+++++. +..+..+ ..+.+++|+|+|++|++++
T Consensus 160 ~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 160 PKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSV----IDTVKVE-------------AAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE----EEEEECS-------------SEEEEEEECTTSSEEEEEEECS
T ss_pred cceEEECCCC-CEEEEEeCCCCEEEEEECCCCeE----EEEEecC-------------CCccceEECCCCCEEEEEecCc
Confidence 7999999999 655 6778899999999998764 2333222 5689999999999988754
Q ss_pred -CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE-EEecCCCeEEEEecCCCCccceeec
Q 012535 361 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLE 438 (461)
Q Consensus 361 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~ 438 (461)
++.|++||+.+ ++.+..+..|... .+++|+|++++| ++++.|+.|++||+.+++.. ..+.
T Consensus 222 ~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~-~~~~ 283 (391)
T 1l0q_A 222 YFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT-ATMA 283 (391)
T ss_dssp SCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEE
T ss_pred CCCcEEEEECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE-EEEE
Confidence 59999999986 7777777766543 389999999977 67789999999999988655 4555
Q ss_pred cCCCC
Q 012535 439 ASKNP 443 (461)
Q Consensus 439 ~~~~~ 443 (461)
.+..+
T Consensus 284 ~~~~~ 288 (391)
T 1l0q_A 284 VGKNP 288 (391)
T ss_dssp CSSSE
T ss_pred CCcCC
Confidence 55444
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.8e-30 Score=238.17 Aligned_cols=265 Identities=8% Similarity=-0.016 Sum_probs=168.1
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
|...+....+++++.+||+|+.|++|+|||..+++.. .......+.+|. +
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~------------------~~~~~~~~~gH~------------~ 137 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII------------------TQHVLGGKSGHH------------N 137 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEE------------------EEEEECTTTSCS------------S
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc------------------eeeeecccCCCC------------C
Confidence 3344444445556778999999999999999876421 122445688999 8
Q ss_pred ceEEEEEeec------CCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 114 KINKIRWCQS------ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 114 ~v~~v~~~p~------~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
.|++|+|+|. .++++|++++.|++|+|||+.++.....
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~------------------------------------ 181 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA------------------------------------ 181 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE------------------------------------
T ss_pred ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee------------------------------------
Confidence 8999999972 2578999999999999999876543221
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~ 265 (461)
..+|...|.+++|+|++. +|+++ .|++|++||+++++
T Consensus 182 -----------------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 182 -----------------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp -----------------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred -----------------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 134556777888888764 67777 78888888887654
Q ss_pred Cceeeecc-----------------CCCCCCCCCcceEEEEEe-CCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 266 QSFNIVDV-----------------KPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 266 ~~~~~~~~-----------------~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
........ ......+|...+.++.|+ |++ ..|++++.|+++++||+..+.. ...+..
T Consensus 221 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~----~~~l~~ 295 (393)
T 4gq1_A 221 SAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND----YNEISD 295 (393)
T ss_dssp ----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC---------------
T ss_pred ccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC----CceEee
Confidence 32211000 001234678889999997 677 8999999999999999987654 222222
Q ss_pred ccCCCc-------cccccccccceeEEEEcc--CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCC
Q 012535 328 QEAPGT-------RSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS 397 (461)
Q Consensus 328 ~~~~~~-------~~~~~~h~~~v~~l~~s~--~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (461)
+..... ......+ .......|+| ++.++++|+ |+.|++||+.+ ++....+..|...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V----------- 362 (393)
T 4gq1_A 296 STMKLGPKNLLPNVQGISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI----------- 362 (393)
T ss_dssp --------CCSCSEEEECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE-----------
T ss_pred ecCccccEEEcccccccccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE-----------
Confidence 211000 0011111 2223344444 444666676 69999999996 77778888887765
Q ss_pred ccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 398 IFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 398 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
.+++|+|||++||++++|| +.+|++.
T Consensus 363 ----~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 363 ----VDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ----EEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ----EEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 5999999999999999766 5566654
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.1e-29 Score=236.44 Aligned_cols=258 Identities=13% Similarity=0.192 Sum_probs=195.2
Q ss_pred ccccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...|.+.|++++|+| ++++||+|+.||.|+|||+.++.... ...+....+.+|.
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------------~~~~~~~~~~~h~--------- 131 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------------PLREPVITLEGHT--------- 131 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------CBCSCSEEEECCS---------
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------ccCCceEEecCCC---------
Confidence 457999999999999 99999999999999999998764320 0112445677888
Q ss_pred ccccceEEEEEeecCCC-cEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 110 EIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..|.+++|+| ++ .+|++++.|++|++||+.+++.........+ .+.+. +++|+|++..+
T Consensus 132 ---~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~l-- 191 (402)
T 2aq5_A 132 ---KRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH------PDTIY-------SVDWSRDGALI-- 191 (402)
T ss_dssp ---SCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC------CSCEE-------EEEECTTSSCE--
T ss_pred ---CeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC------CCceE-------EEEECCCCCEE--
Confidence 7899999995 44 5999999999999999999876665521111 23344 78999999885
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccc-eeeEEeCCCCCEEEEe----CCCeEEEEEccC
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA----DDLRINLWNLEI 263 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~----~d~~i~iwd~~~ 263 (461)
++++.|+.|++|| +.. ......+..+|... +.+++|+|++.+|++| .|+.|++||+++
T Consensus 192 ----------~~~~~d~~i~iwd-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 192 ----------CTSCRDKRVRVIE-PRK------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp ----------EEEETTSEEEEEE-TTT------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred ----------EEEecCCcEEEEe-CCC------CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 9999999999999 432 22333332567665 8999999999999997 599999999997
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEE-EEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
.+...... ...+...+.+++|+|++ .+|+ +|+.||.|++||+.+++.. +..+..+. |..
T Consensus 255 ~~~~~~~~------~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~---~~~l~~~~----------~~~ 314 (402)
T 2aq5_A 255 LEEPLSLQ------ELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPF---LHYLSMFS----------SKE 314 (402)
T ss_dssp CSSCSEEE------ECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTC---EEEEEEEC----------CSS
T ss_pred ccCCceEE------eccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcc---eEeecccc----------cCC
Confidence 66533321 12366779999999999 6775 5667999999999987632 12222221 226
Q ss_pred ceeEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 343 SISDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
.|.+++|+|++.++++ .++.+++|++..
T Consensus 315 ~v~~~~~sp~~~~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 315 SQRGMGYMPKRGLEVN-KCEIARFYKLHE 342 (402)
T ss_dssp CCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred cccceEEeccccccee-cceeEEEEEcCC
Confidence 8999999999998875 456999999985
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=7.7e-29 Score=234.05 Aligned_cols=295 Identities=13% Similarity=0.155 Sum_probs=188.0
Q ss_pred cceEEEEEcCCC--CEEEEeecCCcEEEEEcCCCCCCCCcccccc--c------ccccccCC---c-----ccccccc-c
Q 012535 36 DIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLE--M------MDYSMSRH---P-----EFRYKTE-F 96 (461)
Q Consensus 36 ~~V~~~~~s~~g--~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~--~------~~~~~~~~---~-----~~~~~~~-~ 96 (461)
+.|++++|+|++ .+|++|+.||.|++|++.++........... + ....+.+. | ....... .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 889999999998 7999999999999999876332100000000 0 00000000 0 0000111 3
Q ss_pred cCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC-ceeEEeeeecCCCccCCCCCccccccccC
Q 012535 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
.+|. ..|.+++|+ +++.+|++| .|++|++||+... +........
T Consensus 174 ~~h~------------~~v~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-------------------- 218 (447)
T 3dw8_B 174 NAHT------------YHINSISIN--SDYETYLSA-DDLRINLWHLEITDRSFNIVDIK-------------------- 218 (447)
T ss_dssp SCCS------------SCCCEEEEC--TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC--------------------
T ss_pred cCCC------------cceEEEEEc--CCCCEEEEe-CCCeEEEEECCCCCceeeeeecc--------------------
Confidence 5666 789999999 467799998 8999999999843 222211100
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC-CEEEEe-CC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DD 253 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d 253 (461)
.. .+.+|...|.+++|+|++ ++|+++ .|
T Consensus 219 ---------------------------------------~~-----------~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 219 ---------------------------------------PA-----------NMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp ---------------------------------------CS-----------SGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred ---------------------------------------cc-----------cccccCcceEEEEECCCCCcEEEEEeCC
Confidence 00 026788999999999998 899999 89
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCc------------ceEEEEEeCCCCCeEEEEecCCeEEEEECCC-cccccc
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTE------------VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDT 320 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~ 320 (461)
+.|++||+++........ ..+..|.. .|.+++|+|++ ++|++++. +.|++||++. ++.
T Consensus 249 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~--- 319 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHS----KLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRP--- 319 (447)
T ss_dssp SCEEEEETTTCSSSCTTC----EEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSC---
T ss_pred CeEEEEECcCCcccccee----eEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccc---
Confidence 999999998765421000 12344443 89999999998 89999998 9999999987 543
Q ss_pred cccccccccCCCcccc--c-cccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCcccccccc----
Q 012535 321 HSKLFEEQEAPGTRSF--F-TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL---- 392 (461)
Q Consensus 321 ~~~~~~~~~~~~~~~~--~-~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---- 392 (461)
+..+..|........ + ......+..++|+|++++|++|+ ||.|++||+.+ ++.+ .+..|..........
T Consensus 320 -~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 396 (447)
T 3dw8_B 320 -VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT-KRDI-TLEASRENNKPRTVLKPRK 396 (447)
T ss_dssp -SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT-CCEE-EEECCSTTCCTTCBCCCCC
T ss_pred -cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC-Ccce-eeeecccccccccccCCcc
Confidence 455555431100000 0 00001244599999999999987 69999999985 4443 555554321100000
Q ss_pred --------------ccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 393 --------------YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 393 --------------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
...+.-..|+.++|+|++++||+++.++ +++|.-+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 0011122456899999999999998875 7788643
No 110
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.2e-28 Score=214.49 Aligned_cols=182 Identities=9% Similarity=0.036 Sum_probs=129.7
Q ss_pred cCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC---CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCC
Q 012535 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (461)
Q Consensus 202 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (461)
+.|+.|++|+ +.... +.... ..+|...+..++|++ +++.|+++ .|++|++||+++++....
T Consensus 154 g~d~~V~~~~-~s~dG-----~~~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t-------- 218 (356)
T 2w18_A 154 LSDQQVEVMT-FAEDG-----GGKEN-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK-------- 218 (356)
T ss_dssp STTCEEEEEE-ECTTS-----CEEEE-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE--------
T ss_pred CCCCcEEEEE-ECCCC-----ceeee-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE--------
Confidence 4688999998 42211 11222 257888999999999 78999998 899999999997765443
Q ss_pred CCCC---CcceEEEEEeCCCCCeE------------EEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 278 MEDL---TEVITSAEFHPTHCNML------------AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 278 ~~~~---~~~v~~v~~~p~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
+.+| ...+.+++|+|++ .++ ++|+.|++|++||..+++.. ..+... ...+|..
T Consensus 219 L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~~-------~p~Gh~~ 286 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLYC-------LPPGQAG 286 (356)
T ss_dssp EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEEC-------CCTTCCC
T ss_pred EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEee-------ccCCCcc
Confidence 3332 3467788999998 665 66888999999999988753 222100 0012334
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCe
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (461)
.+.+..+ ++.++++|+ |++|+|||+.+ ++.+.++++|...+. ..++|+|||++|++|+.|++
T Consensus 287 ~~lsg~~--sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 287 RFLEGDV--KDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEECSSSSEEEEECTTSC
T ss_pred eeEcccc--CCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEECCCCCEEEEEECCCc
Confidence 4444444 488899986 79999999996 899999998876541 25899999999999999999
Q ss_pred EEEEec
Q 012535 422 FRVFGC 427 (461)
Q Consensus 422 i~iw~~ 427 (461)
|+|||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999996
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=231.96 Aligned_cols=294 Identities=11% Similarity=0.124 Sum_probs=186.3
Q ss_pred ccccceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 33 ~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
.|...|.+++|+| ++++|++++.||.|++||+.+++. ...+. +.
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------~~~~~-~~----------- 141 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------------------ADVFN-FE----------- 141 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------------------EEEEE-CS-----------
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------------------ceecc-CC-----------
Confidence 4999999999999 788999999999999999987642 12222 33
Q ss_pred ccceEEEEEeecC-CCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 112 EEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 112 ~~~v~~v~~~p~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..+.++.|+|.. ++.++++++.|+.|++||+.+++.......+ .+.+. +++|+|++..+
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~l---- 201 (408)
T 4a11_B 142 -ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH--------RQEIL-------AVSWSPRYDYI---- 201 (408)
T ss_dssp -SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC--------CSCEE-------EEEECSSCTTE----
T ss_pred -CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC--------CCcEE-------EEEECCCCCcE----
Confidence 568999999643 4568999999999999999988766655433 23344 78999999853
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCcccc---------ceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEE
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLV---------AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (461)
+++++.|+.|++|| +........ .........+|...|.+++|+|++++|+++ .|+.|++||
T Consensus 202 -------l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 202 -------LATASADSRVKLWD-VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp -------EEEEETTSCEEEEE-TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -------EEEEcCCCcEEEEE-CCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 48999999999999 543321100 000001115788999999999999999999 899999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
+++.+........ ........+........+ ..+++++.|+.|++||+.+++. +..+..|.
T Consensus 274 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~----~~~~~~~~----------- 334 (408)
T 4a11_B 274 SSNGENTLVNYGK---VCNNSKKGLKFTVSCGCS-SEFVFVPYGSTIAVYTVYSGEQ----ITMLKGHY----------- 334 (408)
T ss_dssp TTTCCBCCCCCCC---CCCCCSSCCCCEECCSSS-SCEEEEEETTEEEEEETTTCCE----EEEECCCS-----------
T ss_pred CCCCccceecccc---ccccccccceeEEecCCC-ceEEEEecCCEEEEEECcCCcc----eeeeccCC-----------
Confidence 9976544321100 011111222222222333 6788889999999999998775 45555444
Q ss_pred ccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec-CCCEEEEecC
Q 012535 341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSY 418 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~ 418 (461)
..|.+++|+|++++|++|+ ||.|++||+.+ .+++.....+.. ...+.+ +...+.+.+.
T Consensus 335 -~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 335 -KTVDCCVFQSNFQELYSGSRDCNILAWVPSL-YEPVPDDDETTT------------------KSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp -SCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------------
T ss_pred -CeEEEEEEcCCCCEEEEECCCCeEEEEeCCC-CCccCCCCceEe------------------ccccccccceeecccCc
Confidence 7899999999999999976 69999999996 666554443332 122333 3345566778
Q ss_pred CCeEEEEecC
Q 012535 419 SNLFRVFGCS 428 (461)
Q Consensus 419 dg~i~iw~~~ 428 (461)
|+.+++|+..
T Consensus 395 ~~~~~~W~~~ 404 (408)
T 4a11_B 395 EGGTSAWSHP 404 (408)
T ss_dssp ----------
T ss_pred cCceeecCCc
Confidence 9999999875
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=242.08 Aligned_cols=261 Identities=11% Similarity=0.074 Sum_probs=191.5
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
...|.+.|.+++|||+|++||+++.||.|+|||.++ ++..+. |.. .+
T Consensus 81 ~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------------------~l~~l~-~~~---~~---- 127 (588)
T 2j04_A 81 NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------------------MLTNLD-SKG---NL---- 127 (588)
T ss_dssp TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------------------EEEECC-CSS---CS----
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------------------eeeecc-CCC---cc----
Confidence 346788999999999999999999999999999542 233344 441 00
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCce-------eEEeeeecCCCccCCCCCccccccccCcceeecCC
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-------KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (461)
....|.+++|+ +||++|++|+.||+|++||+.++.+ ......+... +.+.|. +++|+|+|
T Consensus 128 ~~~sv~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g----h~~~V~-------sVawSPdg 194 (588)
T 2j04_A 128 SSRTYHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG----SKDWVT-------HIVWYEDV 194 (588)
T ss_dssp TTTCEEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT----CCCCEE-------EEEEETTE
T ss_pred ccccEEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc----ccccEE-------EEEEcCCc
Confidence 00359999999 5788999999999999999998753 2222211111 134566 88999999
Q ss_pred CcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccC
Q 012535 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEI 263 (461)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~ 263 (461)
+ ++++.|+.|++|+ +..... ....+.+..+|...|.+++|+ ++.|+++.+++|++||+.+
T Consensus 195 --L------------aass~D~tVrlWd-~~~~~~---~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~ 254 (588)
T 2j04_A 195 --L------------VAALSNNSVFSMT-VSASSH---QPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKN 254 (588)
T ss_dssp --E------------EEEETTCCEEEEC-CCSSSS---CCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTT
T ss_pred --E------------EEEeCCCeEEEEE-CCCCcc---ccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCC
Confidence 4 8899999999999 433221 111122224788999999999 6899988779999999985
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEE--eCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
...... ..+|...+..++| +|++ ..+++++.||+ ++|....
T Consensus 255 ~~~~~~--------~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~--------------------------- 297 (588)
T 2j04_A 255 YSISSL--------KTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDE--------------------------- 297 (588)
T ss_dssp TEEEEE--------ECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSS---------------------------
T ss_pred CeEEEE--------EcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeecc---------------------------
Confidence 443221 2269999999999 9998 89999999999 9998751
Q ss_pred cceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 342 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
++++||+..+++. |+++++|+.. ++.+..+++ ... |.+++|+|||+.+|+++.
T Consensus 298 -----~~~spd~~l~a~~-d~~v~lW~~~--g~~l~~~~~-~~~---------------I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 298 -----LHVTADNIIAPYL-EKKFKKWSTI--WNEFNNYET-TLV---------------IHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -----EEEECCCSSHHHH-HHHHHHTTTT--TTSSSSSCC-EEE---------------EEEEEECTTSSEEEEEEE
T ss_pred -----EEECCCceEEEEc-CCEEEEEECC--CCceeeecc-ceE---------------EEEEEECCCCCEEEEEEe
Confidence 4488888877775 7889999875 344444433 222 358999999999988763
No 113
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=8.3e-30 Score=228.77 Aligned_cols=222 Identities=14% Similarity=0.184 Sum_probs=167.5
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|++++|+ +++++|++|+.|++|++||+.++.....
T Consensus 14 ~~V~~v~~s--~~g~~lasgs~D~~v~lwd~~~~~~~~~----------------------------------------- 50 (316)
T 3bg1_A 14 DMIHDAQMD--YYGTRLATCSSDRSVKIFDVRNGGQILI----------------------------------------- 50 (316)
T ss_dssp CCEEEEEEC--GGGCEEEEEETTTEEEEEEEETTEEEEE-----------------------------------------
T ss_pred CeEEEeeEc--CCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------------------------------
Confidence 889999999 4578999999999999999876532111
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC--CCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
.. +.+|...|.+++|++ ++++|++| .|++|++||++++.....
T Consensus 51 ---------------------------------~~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 51 ---------------------------------AD-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96 (316)
T ss_dssp ---------------------------------EE-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred ---------------------------------EE-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE
Confidence 01 268889999999986 38899999 899999999986532211
Q ss_pred eeccCCCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 347 (461)
..+.+|...|++++|+|+ + .+|++|+.|+.|++||++...... ....+ .+|...|.++
T Consensus 97 ------~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-~~~~~------------~~h~~~v~~~ 156 (316)
T 3bg1_A 97 ------HEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-VKKIN------------NAHTIGCNAV 156 (316)
T ss_dssp ------EEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-ECCBT------------TSSSSCBCCC
T ss_pred ------EEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-eeeee------------ccccCCcceE
Confidence 135679999999999998 5 799999999999999998753210 01222 3345789999
Q ss_pred EEccC-----------------CCEEEEec-CCeEEEEEccCCC--CCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 348 KFARN-----------------GRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 348 ~~s~~-----------------g~~l~s~~-d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
+|+|+ +++|++|+ |+.|++||++..+ +++..+.+|...+ .+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~s 221 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWA 221 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECC
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEec
Confidence 99997 46888876 6999999997422 3556677887765 499999
Q ss_pred cCC----CEEEEecCCCeEEEEecCCC---CccceeeccCCCCCcc
Q 012535 408 GDG----GRVATGSYSNLFRVFGCSEG---SAESTTLEASKNPMSL 446 (461)
Q Consensus 408 ~~~----~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~ 446 (461)
|++ .+|++|+.||.|+||++.+. +.....+..+..++..
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~ 267 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH 267 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEE
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEE
Confidence 986 89999999999999999863 2222334455554443
No 114
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.3e-28 Score=218.83 Aligned_cols=244 Identities=15% Similarity=0.195 Sum_probs=185.4
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|...|++++|+|++++||+|+.||+|+||++.+++ .+..+.+|.
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----------------------~~~~~~~h~----------- 109 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS----------- 109 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS-----------
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----------------------eEEEecCcc-----------
Confidence 4688899999999999999999999999999998765 456678888
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee-EEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..+.++.+. +..+++++.++.+++|+....... .....+ ...+. .+.+.++++.+
T Consensus 110 -~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-------~~~~~~~~~~l---- 165 (318)
T 4ggc_A 110 -ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGH--------SQEVC-------GLRWAPDGRHL---- 165 (318)
T ss_dssp -SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECC--------SSCEE-------EEEECTTSSEE----
T ss_pred -ceEEEeecC----CCEEEEEecCCceEeeecCCCceeEEEEcCc--------cCceE-------EEEEcCCCCEE----
Confidence 557766654 559999999999999998865432 222222 12233 56788888875
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE---Ee-CCCeEEEEEccCCCC
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI---SA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~---~~-~d~~i~iwd~~~~~~ 266 (461)
++++.|+.|++|| +...+.... .. .....+...|.+++++|++..++ ++ .++.|++||.+....
T Consensus 166 --------~s~~~d~~i~iwd-~~~~~~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 166 --------ASGGNDNLVNVWP-SAPGEGGWV--PL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp --------EEEETTSCEEEEE-SSCBTTBSC--CS-EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred --------EEEecCcceeEEE-CCCCccccc--ce-eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 9999999999999 543322111 11 11256778899999999865433 44 689999999986544
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe--cCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
.. ...+...+..+.|+|++ ..+++++ .|+.|++||+++++. +..+.+|. +.|
T Consensus 234 ~~---------~~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~----~~~l~gH~------------~~V 287 (318)
T 4ggc_A 234 LS---------AVDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAELKGHT------------SRV 287 (318)
T ss_dssp EE---------EEECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEEECCCS------------SCE
T ss_pred cc---------cccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcE----EEEEcCCC------------CCE
Confidence 32 22367779999999998 6665544 799999999998875 45555554 889
Q ss_pred eEEEEccCCCEEEEec-CCeEEEEEccC
Q 012535 345 SDIKFARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
++++|+|+|++|++|+ |++|+|||+..
T Consensus 288 ~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 288 LSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999999999976 69999999974
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2e-26 Score=213.49 Aligned_cols=298 Identities=8% Similarity=0.065 Sum_probs=206.5
Q ss_pred cccccceEEEEEcCCCCEE-EEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 32 VQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
+.+...+.+++|+|+|++| ++++.|+.|++||+.+++. ...+..+
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~----------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAG----------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECS-----------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------EEEEECC-----------
Confidence 3444569999999999976 6777999999999987652 2333333
Q ss_pred cccceEEEEEeecCCCcEEEEE-eCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+.+++|+ +++.+++++ +.++.|++||+.+++.......+. .+. +++|+|+++.+
T Consensus 74 --~~v~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~-------~~~~s~dg~~l--- 130 (391)
T 1l0q_A 74 --SSPQGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---------SPL-------GLALSPDGKKL--- 130 (391)
T ss_dssp --SSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE---
T ss_pred --CCccceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---------Ccc-------eEEECCCCCEE---
Confidence 349999999 556677554 577999999999988766554321 122 78999999874
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE-EEe-CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++++.++.|++|| +.. .+....+ ..+ ..+.+++|+|+++.+ +++ .++.|++||+++.+..
T Consensus 131 --------~~~~~~~~~v~~~d-~~~------~~~~~~~-~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 131 --------YVTNNGDKTVSVIN-TVT------KAVINTV-SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (391)
T ss_dssp --------EEEETTTTEEEEEE-TTT------TEEEEEE-ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred --------EEEeCCCCEEEEEE-CCC------CcEEEEE-ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 36788899999999 422 2223332 333 457899999999887 455 6899999999865433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe---cCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
.. ..+...+.+++|+|++ ++|++++ .++.|++||+++++. +..+..+ ..+
T Consensus 194 ~~---------~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~-------------~~~ 246 (391)
T 1l0q_A 194 DT---------VKVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI----TARIPVG-------------PDP 246 (391)
T ss_dssp EE---------EECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE----EEEEECC-------------SSE
T ss_pred EE---------EecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE----EEEEecC-------------CCc
Confidence 21 1245678999999999 7888777 689999999998764 3444443 357
Q ss_pred eEEEEccCCCEEE-Eec-CCeEEEEEccCCCCCeeEEeeccCcccccc--ccccCCCccceeeEEEecC------C--CE
Q 012535 345 SDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLC--DLYENDSIFDKFECCLSGD------G--GR 412 (461)
Q Consensus 345 ~~l~~s~~g~~l~-s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~------~--~~ 412 (461)
.+++|+|+|++|+ +++ ++.|++||+.+ ++.+..+..|........ ..........+........ . ..
T Consensus 247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~ 325 (391)
T 1l0q_A 247 AGIAVTPDGKKVYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ 325 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred cEEEEccCCCEEEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence 8999999999885 545 69999999996 788888877765422100 0000011111112222211 1 34
Q ss_pred EEEecCCCeEEEEecCCCC
Q 012535 413 VATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 413 l~s~~~dg~i~iw~~~~~~ 431 (461)
+...+.|..+++|++..+.
T Consensus 326 ~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 326 FTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EEECCBSCSEEEEECSSSC
T ss_pred EEeCCCCceEEEEECCCCc
Confidence 6677788999999998775
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-27 Score=222.20 Aligned_cols=266 Identities=12% Similarity=0.043 Sum_probs=187.7
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc---eeEEeeeecCC------------Cc-----------------
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHP------------EK----------------- 160 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~------------~~----------------- 160 (461)
.++.+++|+ ++|++++ ++.++.|++||+.+++ .......+... ..
T Consensus 5 ~p~~~v~~s--~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTS--RDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEEC--SSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEec--CCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 458999999 5576544 4568899999999887 43333321110 00
Q ss_pred -----------------cCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccce
Q 012535 161 -----------------AAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG 223 (461)
Q Consensus 161 -----------------~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 223 (461)
....+.|. +++|+|+++.+ +++++.|+.|++|| +.... ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~-------~~~~s~d~~~l-----------~~~~~~dg~v~iwd-~~~~~----~~ 138 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIR-------NLRLTSDESRL-----------IACADSDKSLLVFD-VDKTS----KN 138 (450)
T ss_dssp ------------------CCCCCEE-------EEEECTTSSEE-----------EEEEGGGTEEEEEE-ECSSS----SS
T ss_pred ccccccCccccCCCCCCCccCCceE-------EEEEcCCCCEE-----------EEEECCCCeEEEEE-CcCCC----Cc
Confidence 00011233 78899999873 37889999999999 54101 11
Q ss_pred eeEeee-cccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC---CCCeE
Q 012535 224 CRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNML 298 (461)
Q Consensus 224 ~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l 298 (461)
+...+. ..|...|.+++|+|++++|+++ .++.|++|++.+....... ...+.+|...|++++|+|+ + ++|
T Consensus 139 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~-~~l 213 (450)
T 2vdu_B 139 VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT----QEPILGHVSMLTDVHLIKDSDGH-QFI 213 (450)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC----CCCSEECSSCEEEEEEEECTTSC-EEE
T ss_pred eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc----ceeeecccCceEEEEEcCCCCCC-cEE
Confidence 222221 2567889999999999999999 8999999999865433100 0145678999999999999 7 899
Q ss_pred EEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCee
Q 012535 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA 377 (461)
Q Consensus 299 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~ 377 (461)
++|+.|+.|++||++++.. +..+ +.+|...|.+++|+ ++++|++++ |+.|++||+.+ ++++.
T Consensus 214 ~s~~~d~~i~vwd~~~~~~----~~~~-----------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~ 276 (450)
T 2vdu_B 214 ITSDRDEHIKISHYPQCFI----VDKW-----------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLS 276 (450)
T ss_dssp EEEETTSCEEEEEESCTTC----EEEE-----------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT-CCEEE
T ss_pred EEEcCCCcEEEEECCCCce----eeee-----------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC-CcEee
Confidence 9999999999999988764 2221 22344889999999 999999976 69999999996 78888
Q ss_pred EEeeccCccccccccc-----------cCCCccceeeEEEecCCCEEEEec-CCCeEEEEec
Q 012535 378 TFQVHEHLRPKLCDLY-----------ENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC 427 (461)
Q Consensus 378 ~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~ 427 (461)
.+..+.... .+.... ....-..|..++|+|++++|++++ .|+.|++|++
T Consensus 277 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 277 TFDYNSLIK-PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEECHHHHG-GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eecchhhhh-hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 877543110 000000 001112456899999999999998 8999999999
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.8e-27 Score=214.90 Aligned_cols=247 Identities=12% Similarity=0.102 Sum_probs=171.1
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|++++|+ +|+.+|++|+.++ +++|++..++........ .+. .+++.+++..+
T Consensus 20 ~~V~~v~fs--~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----------~~~-------~~~~~~~~~~~------ 73 (355)
T 3vu4_A 20 NPVTDYEFN--QDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----------HLS-------KVRMLHRTNYV------ 73 (355)
T ss_dssp CCCCEEEEC--TTSSEEEEECSSE-EEEEEETTEEEEEEEECS----------CCC-------EEEECTTSSEE------
T ss_pred CceEEEEEC--CCCCEEEEEcCCE-EEEEecCCcceeeeeecC----------CeE-------EEEEcCCCCEE------
Confidence 789999999 6788888888775 789999876554432221 111 45666666653
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeec
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (461)
+++++.++.|++|| +.. .++...+ .+...|.+++++++. ++++.++.|++||+.+......
T Consensus 74 -----~~~~~~d~~v~iWd-~~~------~~~~~~~--~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~--- 134 (355)
T 3vu4_A 74 -----AFVTGVKEVVHIWD-DVK------KQDVSRI--KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRIT--- 134 (355)
T ss_dssp -----EEECSSTTEEEEEE-TTT------TEEEEEE--ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSS---
T ss_pred -----EEEECCccEEEEEE-CCC------CcEEEEE--ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeE---
Confidence 36788889999999 322 2233333 356789999998764 5555678999999986622221
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEE--EecCCeEEEEECCCcccccccccccccccCCCc-cccccccccceeEEEE
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKF 349 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~ 349 (461)
.+.. ....+++++ . ++++ |+.||.|++||++++............. ...+ ...+.+|...|.+++|
T Consensus 135 ----~~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~-~~~p~~~~~~~h~~~v~~~~~ 203 (355)
T 3vu4_A 135 ----DDIR---FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK-AILGKGVLIKAHTNPIKMVRL 203 (355)
T ss_dssp ----CCEE---EEEEEEEET-T--EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEE
T ss_pred ----Eecc---CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCcccccccccccc-ccCcccEEEEccCCceEEEEE
Confidence 2222 445566777 3 4444 6899999999998764210000000000 0011 3345677799999999
Q ss_pred ccCCCEEEEec-CCe-EEEEEccCCCCCeeEEe-e-ccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 350 ARNGRHILSRD-YMT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 350 s~~g~~l~s~~-d~~-i~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
+|+|++|++|+ |++ |++||+++ ++++..+. + |...+ .+++|+|++++|++++.|+.|++|
T Consensus 204 s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 204 NRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp CTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEE
Confidence 99999999987 698 99999996 88888888 4 77655 599999999999999999999999
Q ss_pred ecCCCC
Q 012535 426 GCSEGS 431 (461)
Q Consensus 426 ~~~~~~ 431 (461)
|+..+.
T Consensus 268 ~~~~~~ 273 (355)
T 3vu4_A 268 EIFNDQ 273 (355)
T ss_dssp ESSCCS
T ss_pred EccCCC
Confidence 998764
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=6.2e-27 Score=214.89 Aligned_cols=281 Identities=13% Similarity=0.150 Sum_probs=197.2
Q ss_pred cccccccCCCcchhhccccccccceEEEEEeecC-CCcEEEEEeCCCeEEEEEccC-Ccee-EEeeeecCCCccCCCCCc
Q 012535 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQE-KKVK-KVFDWNVHPEKAAGNGPI 167 (461)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~-~~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~~~~~~~~~v 167 (461)
+....+.+|. ..|++++|+|.. ++.+|++++.||.|++||+.+ +... .....+ .+.+
T Consensus 30 ~~~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--------~~~v 89 (368)
T 3mmy_A 30 KDIEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH--------TGPV 89 (368)
T ss_dssp CCEECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC--------SSCE
T ss_pred ceeEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc--------cCCE
Confidence 3455678888 889999999531 158999999999999999987 4333 333332 3345
Q ss_pred cccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEe--CCCC
Q 012535 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDG 245 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~ 245 (461)
. +++|+|+++.+ ++++.|+.|++|| +... .... ..+|...|.+++| ++++
T Consensus 90 ~-------~~~~~~~~~~l------------~s~~~dg~v~iwd-~~~~------~~~~--~~~~~~~v~~~~~~~~~~~ 141 (368)
T 3mmy_A 90 L-------DVCWSDDGSKV------------FTASCDKTAKMWD-LSSN------QAIQ--IAQHDAPVKTIHWIKAPNY 141 (368)
T ss_dssp E-------EEEECTTSSEE------------EEEETTSEEEEEE-TTTT------EEEE--EEECSSCEEEEEEEECSSC
T ss_pred E-------EEEECcCCCEE------------EEEcCCCcEEEEE-cCCC------Ccee--eccccCceEEEEEEeCCCC
Confidence 5 78999999985 9999999999999 4322 2222 2578999999999 8999
Q ss_pred CEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccc
Q 012535 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (461)
Q Consensus 246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (461)
++|+++ .|+.|++||+++.+.... +. ....+.++.+.+ ..+++++.++.+++||++...........
T Consensus 142 ~~l~~~~~dg~i~vwd~~~~~~~~~--------~~-~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 209 (368)
T 3mmy_A 142 SCVMTGSWDKTLKFWDTRSSNPMMV--------LQ-LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIES 209 (368)
T ss_dssp EEEEEEETTSEEEEECSSCSSCSEE--------EE-CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCC
T ss_pred CEEEEccCCCcEEEEECCCCcEEEE--------Ee-cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccc
Confidence 999998 899999999987654433 22 233566666664 47888999999999999876432111111
Q ss_pred cccccCCCccccccccccceeEEEEccCCCE----EEEec-CCeEEEEEccCCC---CCeeEEeeccCccccccccccCC
Q 012535 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRH----ILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYEND 396 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~----l~s~~-d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 396 (461)
.. ...+.++.+.++... +++++ |+.|++||++. . ..+..+..|.......... .
T Consensus 210 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~ 271 (368)
T 3mmy_A 210 PL--------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSAP---Q 271 (368)
T ss_dssp SC--------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC-SCHHHHSEEEECSEEC----CCC---E
T ss_pred cc--------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC-CCccccceeeeeeeccccccccc---c
Confidence 11 134566666655443 77765 69999999986 4 4567777776521110000 0
Q ss_pred CccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCcccccc
Q 012535 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMSLFLHF 450 (461)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
....|.+++|+|++++|++|+.||.|++||+.+++.. ..+..|..++......
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s 324 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL-KTSEQLDQPISACCFN 324 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE-EECCCCSSCEEEEEEC
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE-EEecCCCCCceEEEEC
Confidence 1112469999999999999999999999999988655 5666777666554443
No 119
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=8.1e-27 Score=219.23 Aligned_cols=248 Identities=15% Similarity=0.265 Sum_probs=192.0
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.+++|. +.++++|+.||+|++||+.+++.......+ .+.+. +++| ++..
T Consensus 134 ~~v~~~~~d----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--------~~~v~-------~l~~--~~~~------- 185 (435)
T 1p22_A 134 KGVYCLQYD----DQKIVSGLRDNTIKIWDKNTLECKRILTGH--------TGSVL-------CLQY--DERV------- 185 (435)
T ss_dssp CCEEEEECC----SSEEEEEESSSCEEEEESSSCCEEEEECCC--------SSCEE-------EEEC--CSSE-------
T ss_pred CcEEEEEEC----CCEEEEEeCCCeEEEEeCCCCeEEEEEcCC--------CCcEE-------EEEE--CCCE-------
Confidence 668888873 679999999999999999998877666544 23344 4444 6666
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
+++|+.||.|++|| +.. .++...+ .+|...|.+++|++ ..+++| .|+.|++||+++.......
T Consensus 186 -----l~sg~~dg~i~vwd-~~~------~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~- 249 (435)
T 1p22_A 186 -----IITGSSDSTVRVWD-VNT------GEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR- 249 (435)
T ss_dssp -----EEEEETTSCEEEEE-SSS------CCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-
T ss_pred -----EEEEcCCCeEEEEE-CCC------CcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-
Confidence 49999999999999 432 2233443 78999999999974 588888 8999999999866544211
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
..+.+|...|.+++| ++ .+|++|+.||.|++||+++++. +..+..+. ..|.++.|+
T Consensus 250 ----~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~------------~~v~~~~~~- 305 (435)
T 1p22_A 250 ----RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEF----VRTLNGHK------------RGIACLQYR- 305 (435)
T ss_dssp ----EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCE----EEEEECCS------------SCEEEEEEE-
T ss_pred ----eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcE----EEEEcCCC------------CcEEEEEeC-
Confidence 135678999999999 45 7999999999999999998765 45555444 789999984
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
+.+|++|+ ||.|++||+++ ++++..+.+|...+ .+++| ++.+|++|+.||.|++||+.++
T Consensus 306 -~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 306 -DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred -CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 67888876 69999999996 88999999888765 37777 7899999999999999999766
Q ss_pred Cc--------cceeeccCCCCCccc
Q 012535 431 SA--------ESTTLEASKNPMSLF 447 (461)
Q Consensus 431 ~~--------~~~~~~~~~~~~~~~ 447 (461)
+. ....+..|..++...
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred CCccccccchheeeccCCCCCeEEE
Confidence 41 234566666665543
No 120
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.2e-27 Score=216.37 Aligned_cols=214 Identities=16% Similarity=0.212 Sum_probs=168.9
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (461)
+...+.+|. ..|++++|+ +++.+|++++.||.|++|++..+.....
T Consensus 3 ~~~~~~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------- 48 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLI-------------------- 48 (379)
T ss_dssp --CCEEECC------------CCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEEEE--------------------
T ss_pred ccEEecCCc------------ccEEEEEEc--CCCCEEEEEECCCcEEEEecCCCcceee--------------------
Confidence 345678888 889999999 5678999999999999999874322111
Q ss_pred cccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEE
Q 012535 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFI 249 (461)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~ 249 (461)
.. +.+|...|.+++|+++ +++|+
T Consensus 49 ------------------------------------------------------~~-~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 49 ------------------------------------------------------DT-LTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp ------------------------------------------------------EE-ECCCSSCEEEEEECCGGGCSEEE
T ss_pred ------------------------------------------------------eE-ecCCCCcEEEEEeCCCCCCCEEE
Confidence 01 2578899999999987 89999
Q ss_pred Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCcccccccccccc
Q 012535 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
++ .|+.|++||+++.+.... ..+..|...|.+++|+|+ + .+|++++.|+.|++||++...... ...+
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~~- 143 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIII- 143 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC--EEEE-
T ss_pred EeccCCEEEEEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee--eEEe-
Confidence 99 899999999986542111 135668899999999999 7 899999999999999998864311 1222
Q ss_pred cccCCCccccccccccceeEEEEcc-------------CCCEEEEec-CCeEEEEEccCCCC----CeeEEeeccCcccc
Q 012535 327 EQEAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRD-YMTLKLWDINMDSG----PVATFQVHEHLRPK 388 (461)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~l~~s~-------------~g~~l~s~~-d~~i~vwd~~~~~~----~~~~~~~~~~~~~~ 388 (461)
.+|...|.+++|+| ++.+|++++ |+.|++||++. +. ....+.+|...+
T Consensus 144 -----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~h~~~v-- 209 (379)
T 3jrp_A 144 -----------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV-- 209 (379)
T ss_dssp -----------ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE--
T ss_pred -----------cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC-CCcceeeEEEEecccCcE--
Confidence 23447899999999 689999976 69999999986 33 334566676654
Q ss_pred ccccccCCCccceeeEEEecC---CCEEEEecCCCeEEEEecCCCC
Q 012535 389 LCDLYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 210 -------------~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 210 -------------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred -------------eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 59999999 8999999999999999999874
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2e-27 Score=219.84 Aligned_cols=212 Identities=16% Similarity=0.159 Sum_probs=132.0
Q ss_pred cccccceeeEEeCC--------CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE
Q 012535 230 HAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300 (461)
Q Consensus 230 ~~~~~~v~~i~~~~--------~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 300 (461)
.+|...|++++|+| ++++|+++ .|++|++||+++...... +.+|...+.+++|+|++..+|++
T Consensus 133 ~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~~p~~~~~l~~ 204 (393)
T 4gq1_A 133 SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQFRPSNPNQLIV 204 (393)
T ss_dssp TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEEETTEEEEEEE
T ss_pred CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEECCCCCceEEe
Confidence 78999999999998 78899999 899999999986554432 44588899999999987568999
Q ss_pred EecCCeEEEEECCCccccccccccccccc---------CCCccccccccccceeEEEEc-cCCCEEEEec-CCeEEEEEc
Q 012535 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQE---------APGTRSFFTEIIASISDIKFA-RNGRHILSRD-YMTLKLWDI 369 (461)
Q Consensus 301 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~h~~~v~~l~~s-~~g~~l~s~~-d~~i~vwd~ 369 (461)
|+.|++|++||+++++...........+. .........+|...+.++.|+ |+|+.|++++ |+++++||+
T Consensus 205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~ 284 (393)
T 4gq1_A 205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL 284 (393)
T ss_dssp EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence 99999999999998764321111100000 001112235688899999997 7999999976 699999999
Q ss_pred cCCCCCeeEEeeccCcccccccccc---CCCccceeeEEEec--CCCEEEEecCCCeEEEEecCCCCccceeeccCCCCC
Q 012535 370 NMDSGPVATFQVHEHLRPKLCDLYE---NDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
.. ++....+..|...+........ ...........|+| ++.++++|+.||.|++||+.+++.. .....+..++
T Consensus 285 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-~~~~~~~~~V 362 (393)
T 4gq1_A 285 FA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-SIPIQLGMPI 362 (393)
T ss_dssp --------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-EEEEECSSCE
T ss_pred cc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-EEecCCCCcE
Confidence 86 6666666666544322111100 00000112344554 3457788999999999999998766 4455666666
Q ss_pred ccccccc
Q 012535 445 SLFLHFQ 451 (461)
Q Consensus 445 ~~~~~~~ 451 (461)
.....++
T Consensus 363 ~svafsp 369 (393)
T 4gq1_A 363 VDFCWHQ 369 (393)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 6554443
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=9e-28 Score=209.07 Aligned_cols=238 Identities=11% Similarity=0.034 Sum_probs=155.4
Q ss_pred cccceEEEEEcCC----CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 34 EVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 34 h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
|...|.+++|+|| ++++++++.+ +++|++.+++.+......+.+......++|+.+....+.+|.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--------- 178 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP--------- 178 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC---------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC---------
Confidence 4558999999999 9999998854 778888765532111122344455666777788888888888
Q ss_pred ccccceEEEEEee-cCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 110 EIEEKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 110 ~~~~~v~~v~~~p-~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..++.++|+| +.++.+|++++.|++|+|||++++++...+..+... ...+. +++|+|+|..+
T Consensus 179 ---~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-----v~~v~-------~vafSpdG~~l-- 241 (356)
T 2w18_A 179 ---PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-----QASVC-------HKAYSEMGLLF-- 241 (356)
T ss_dssp ---CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------CCCE-------EEEEEETTEEE--
T ss_pred ---CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-----eeeeE-------EEEECCCCCEE--
Confidence 5689999997 557889999999999999999999877766532110 00111 34566666542
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++++.+ .. ...+++| .|++|++||..+++..
T Consensus 242 ----------vs~s~~-----------------------------~~---------~w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 242 ----------IVLSHP-----------------------------CA---------KESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp ----------EEEC--------------------------------------------------CCEEEEEEETTTTEEE
T ss_pred ----------EEeccC-----------------------------CC---------cceeeccCCCcEEEEEECCCCEEE
Confidence 111100 00 1135677 7999999999865433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccc-eeE
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISD 346 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~ 346 (461)
. +.... .-.+|...+.+..++ + .++++++.|++|+|||+.+++. +.++.+|. .. +..
T Consensus 274 ~-v~~~~--~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~----l~tL~gH~------------~~vvs~ 331 (356)
T 2w18_A 274 G-VMLYC--LPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQC----TALLPPVS------------DQHWSF 331 (356)
T ss_dssp E-EEEEC--CCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSE----EEEECCC--------------CCCCE
T ss_pred E-EEEee--ccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcE----EEEecCCC------------CCeEEE
Confidence 2 11000 013455555555554 5 7899999999999999999886 56666554 44 446
Q ss_pred EEEccCCCEEEEec-CCeEEEEEc
Q 012535 347 IKFARNGRHILSRD-YMTLKLWDI 369 (461)
Q Consensus 347 l~~s~~g~~l~s~~-d~~i~vwd~ 369 (461)
++|+|||++|++|+ |++|+|||+
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 89999999999987 699999996
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=4.9e-26 Score=213.36 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=160.9
Q ss_pred cceeecC-CCcccccccCCCCCccccccCCCcEEeeeeecccCccc----cceeeEeeecccccceeeEEeCCCCC-EEE
Q 012535 176 PKSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL----VAGCRRIYAHAHDYHINSISNNSDGE-TFI 249 (461)
Q Consensus 176 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~ 249 (461)
+++|+|+ +.. +++++.+|.|++|+ +....... .......+ .+|...|.+++|+|++. +|+
T Consensus 133 ~l~~~p~~~~~------------lat~~~dg~V~vwd-~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 133 RARYMPQNACV------------IATKTPSSDVLVFD-YTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEEETTEEEE------------EEEECSSSCEEEEE-GGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEE
T ss_pred EEEECCCCCcE------------EEEECCCCcEEEEE-CCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEE
Confidence 7888887 444 48999999999999 54321110 02223333 78999999999999988 899
Q ss_pred Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
+| .||.|++||+............ ...+.+|...|.+++|+|++..+|++++.||.|++||+++.... ..+..+..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~- 275 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDA-KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTVDA- 275 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEEC-SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEEEC-
T ss_pred EEeCCCeEEEEeCCCCCCCCceecc-ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEeec-
Confidence 98 7999999999864332111100 01355789999999999955589999999999999999976311 01233333
Q ss_pred cCCCccccccccccceeEEEEccCCC-EEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
|...|++++|+|++. +|++|+ ||.|++||++....++..+..|...+ .+++|
T Consensus 276 -----------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~ 329 (430)
T 2xyi_A 276 -----------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI---------------FQVQW 329 (430)
T ss_dssp -----------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCE---------------EEEEE
T ss_pred -----------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCE---------------EEEEE
Confidence 447899999999987 577776 69999999997567888998888765 59999
Q ss_pred ecCCC-EEEEecCCCeEEEEecCCC
Q 012535 407 SGDGG-RVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 407 s~~~~-~l~s~~~dg~i~iw~~~~~ 430 (461)
+|+++ +|++++.||.|+|||+...
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99985 6999999999999999873
No 124
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=5.9e-26 Score=206.63 Aligned_cols=229 Identities=16% Similarity=0.136 Sum_probs=169.1
Q ss_pred ccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccc
Q 012535 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (461)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (461)
..+.+|. ..|++++|+ +++.+|++++.||.|++||+.++......
T Consensus 5 ~~~~gH~------------~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------- 49 (351)
T 3f3f_A 5 PFDSGHD------------DLVHDVVYD--FYGRHVATCSSDQHIKVFKLDKDTSNWEL--------------------- 49 (351)
T ss_dssp CEECCCS------------SCEEEEEEC--SSSSEEEEEETTSEEEEEEECSSSCCEEE---------------------
T ss_pred ccCcccc------------cceeEEEEc--CCCCEEEEeeCCCeEEEEECCCCCCccee---------------------
Confidence 3467888 889999999 46789999999999999998764321100
Q ss_pred cCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC--CCCEEEEe
Q 012535 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA 251 (461)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~ 251 (461)
... +.+|...|.+++|+| ++++|+++
T Consensus 50 ---------------------------------------------------~~~-~~~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 50 ---------------------------------------------------SDS-WRAHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp ---------------------------------------------------EEE-EECCSSCEEEEEECCGGGCSEEEEE
T ss_pred ---------------------------------------------------cce-eccCCCcEEEEEEcCCCCCCEEEEE
Confidence 011 257889999999999 59999998
Q ss_pred -CCCeEEEEEccCCCCceeeeccC-CCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVK-PANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
.|+.|++||++...........+ ...+.+|...|.+++|+|+ + .+|++++.||.|++||+++++.. ..+..
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~ 152 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDL----RSWTL 152 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCT----TCCEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHh----ccccc
Confidence 89999999998654211000000 0145678999999999999 8 89999999999999999987652 22221
Q ss_pred ccCC-CccccccccccceeEEEEccC---CCEEEEec-CCeEEEEEccCCCCC--eeEEeeccCccccccccccCCCccc
Q 012535 328 QEAP-GTRSFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFD 400 (461)
Q Consensus 328 ~~~~-~~~~~~~~h~~~v~~l~~s~~---g~~l~s~~-d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (461)
.... .......+|...+.+++|+|+ +.+|++++ ++.+.+|+... ++. +..+.+|...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i-------------- 217 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI-------------- 217 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE--------------
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce--------------
Confidence 1100 001112346688999999997 88999876 58887777664 443 55666676654
Q ss_pred eeeEEEecCC----CEEEEecCCCeEEEEecCCC
Q 012535 401 KFECCLSGDG----GRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 401 v~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~ 430 (461)
.+++|+|++ ++|++|+.||.|++||+..+
T Consensus 218 -~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 218 -RSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp -EEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred -eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 599999998 89999999999999999875
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.7e-24 Score=207.36 Aligned_cols=314 Identities=11% Similarity=0.051 Sum_probs=208.6
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEEEc--CCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
+.+++|+|||++|++++.|+.|++||+ .+++ ....+..+ ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----------------------~~~~i~~g-------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----------------------KVAEIKIG-------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----------------------EEEEEECC-------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----------------------EEEEEecC-------------CCc
Confidence 889999999999999999999999999 5443 22334322 447
Q ss_pred EEEEEee--cCCCcEEEEEe-CCCeEEEEEccCCceeEEeeeecCCCc--c-CCCCCccccccccCcceeecCCCccccc
Q 012535 116 NKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEK--A-AGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 116 ~~v~~~p--~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..++|+| ..+++++++++ .+++|.+||..+++............. . .....+. .+.++|++..+
T Consensus 225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~-------~i~~s~~~~~~--- 294 (543)
T 1nir_A 225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA-------AIIASHEHPEF--- 294 (543)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE-------EEEECSSSSEE---
T ss_pred ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceE-------EEEECCCCCEE---
Confidence 9999994 00688998887 589999999999887776654321000 0 0011222 67788877764
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (461)
+++...++.|.+|| +...+.. . ... ..+...+.+++|+|++++|+++ .+++|.+||..+++..
T Consensus 295 --------~vs~~~~g~i~vvd-~~~~~~l---~-~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 295 --------IVNVKETGKVLLVN-YKDIDNL---T-VTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp --------EEEETTTTEEEEEE-CTTSSSC---E-EEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred --------EEEECCCCeEEEEE-ecCCCcc---e-eEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence 57788899999999 4332211 1 111 2345678899999999987665 5899999999966433
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCCeEEEEECCCccc---ccccccccccccCCCccccccccccc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSAL---CDTHSKLFEEQEAPGTRSFFTEIIAS 343 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (461)
..+.. ....|......+ ++|++..+++++. .|++|.+||+.+... ..+.+.++..+. +.
T Consensus 360 -~~i~~---g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g------------~~ 422 (543)
T 1nir_A 360 -ALVDV---GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG------------GG 422 (543)
T ss_dssp -EEEEC---SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC------------SC
T ss_pred -Eeecc---CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC------------CC
Confidence 32211 111244433333 5787436777775 589999999987210 011245555543 56
Q ss_pred eeEEEEccCCCEEEEec--------CCeEEEEEccCCCCCe-eEEeeccCccccccccccCCCccceeeEEEecCCCEEE
Q 012535 344 ISDIKFARNGRHILSRD--------YMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (461)
Q Consensus 344 v~~l~~s~~g~~l~s~~--------d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (461)
+..++|+|+|++|++++ +++|.|||+.+ .+.. ..+....- ..+ ...-..++.++|+|+|+.|+
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~-----~~~--~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEW-----ADL--GEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHH-----HCC--CSSCCEEEEEEECSSSSEEE
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC-CCCCeEEeechhh-----ccc--CCCCCceEeccCCCCCCEEE
Confidence 78899999999999975 47999999997 5554 44421100 000 00011235899999999888
Q ss_pred Ee-----cCCCeEEEEecCCCCccceeec
Q 012535 415 TG-----SYSNLFRVFGCSEGSAESTTLE 438 (461)
Q Consensus 415 s~-----~~dg~i~iw~~~~~~~~~~~~~ 438 (461)
++ +.|+.|.|||.+++++. .+++
T Consensus 495 ~s~~~~~~~~~~i~v~D~~t~~~~-~~i~ 522 (543)
T 1nir_A 495 FSVWNGKNDSSALVVVDDKTLKLK-AVVK 522 (543)
T ss_dssp EEEECCTTSCCEEEEEETTTTEEE-EEEC
T ss_pred EEeecCCCCCCeEEEEECCCceEE-Eeec
Confidence 65 34899999999999765 4444
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-25 Score=223.98 Aligned_cols=213 Identities=16% Similarity=0.218 Sum_probs=166.0
Q ss_pred ccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccc
Q 012535 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (461)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (461)
..+.+|. +.|++++|+ +++.++++|+.||+|++|++..+.....
T Consensus 3 ~~l~gH~------------~~V~~l~~s--~dg~~latg~~dg~I~vwd~~~~~~~~~---------------------- 46 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLI---------------------- 46 (753)
T ss_dssp -----CC------------CCEEEECCC--SSSCCEEEEETTTEEEEEEEETTEEEEE----------------------
T ss_pred eecccCc------------ceeEEEEEC--CCCCeEEEEECCCcEEEEecCCCCCccc----------------------
Confidence 3567888 889999999 5577999999999999999874322111
Q ss_pred cCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC--CCEEEEe
Q 012535 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA 251 (461)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~ 251 (461)
.. +.+|...|.+++|+|+ +++|++|
T Consensus 47 ----------------------------------------------------~~-l~~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 47 ----------------------------------------------------DT-LTGHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp ----------------------------------------------------EE-ECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred ----------------------------------------------------ee-ccCCcCceEEEEecCCCCCCEEEEE
Confidence 01 2678899999999988 9999999
Q ss_pred -CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC--CCCeEEEEecCCeEEEEECCCcccccccccccccc
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
.||.|++||++++..... ..+.+|...|++++|+|+ + .++++|+.||.|++||++.+.... ...+
T Consensus 74 s~Dg~I~vwd~~~~~~~~~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~--~~~~--- 141 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIII--- 141 (753)
T ss_dssp ETTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC--CEEE---
T ss_pred eCCCeEEEEECCCCccccc------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc--eeEe---
Confidence 899999999986542111 145678999999999999 7 899999999999999998874311 1222
Q ss_pred cCCCccccccccccceeEEEEcc-------------CCCEEEEec-CCeEEEEEccCCC---CCeeEEeeccCccccccc
Q 012535 329 EAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCD 391 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~-------------~g~~l~s~~-d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~ 391 (461)
.+|...|.+++|+| ++.+|++|+ ||.|++||++... .....+.+|...+
T Consensus 142 ---------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V----- 207 (753)
T 3jro_A 142 ---------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV----- 207 (753)
T ss_dssp ---------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE-----
T ss_pred ---------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE-----
Confidence 33448899999999 588899876 6999999998622 3445666777655
Q ss_pred cccCCCccceeeEEEecC---CCEEEEecCCCeEEEEecCCCC
Q 012535 392 LYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
.+++|+|+ +++|++|+.||.|++||+.+++
T Consensus 208 ----------~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 208 ----------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ----------EEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ----------EEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 59999999 8999999999999999999864
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.9e-25 Score=207.78 Aligned_cols=301 Identities=12% Similarity=0.134 Sum_probs=203.9
Q ss_pred cccceEEEEEcCCCC-EEEEee----cCC----cEEEEEc--CCCCCCCCcccccccccccccCCccccccccccCCCcc
Q 012535 34 EVDIISAIEFDKSGD-HLATGD----RGG----RVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (461)
Q Consensus 34 h~~~V~~~~~s~~g~-~l~tg~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 102 (461)
+...|...+|++.|. ++++|+ .|| .|+|||+ .+++.+ ....+.+|.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~---------------------~~~~~~~~~-- 117 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL---------------------AQNSYKVNK-- 117 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE---------------------EEEEEEECG--
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE---------------------eeeEEEcCh--
Confidence 335788888988775 666886 467 8999999 766521 123455665
Q ss_pred hhhccccccccceEEEEEeec------------CCCcEEEEEeCC------CeEEEEEccCCceeEEeeeecCCCccCCC
Q 012535 103 FDYLKSLEIEEKINKIRWCQS------------ANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (461)
Q Consensus 103 ~~~~~~~~~~~~v~~v~~~p~------------~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 164 (461)
..+..+++.+. ..+..++.++.+ ++|++||++.+....+.. + .
T Consensus 118 ----------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~-~--------~ 178 (415)
T 2hqs_A 118 ----------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-S--------P 178 (415)
T ss_dssp ----------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE-E--------S
T ss_pred ----------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC-C--------C
Confidence 33444444321 114466666543 799999998655443332 2 1
Q ss_pred CCccccccccCcceeecCCCcccccccCCCCCccccccCCC---cEEeeeeecccCccccceeeEeeecccccceeeEEe
Q 012535 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS---SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241 (461)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 241 (461)
+.+. +++|+|+|+.+ +.++.++ .|++|| +... ++. . +..|...+.+++|
T Consensus 179 ~~v~-------~~~~Spdg~~l------------a~~s~~~~~~~i~~~d-~~tg------~~~-~-l~~~~~~~~~~~~ 230 (415)
T 2hqs_A 179 QPLM-------SPAWSPDGSKL------------AYVTFESGRSALVIQT-LANG------AVR-Q-VASFPRHNGAPAF 230 (415)
T ss_dssp SCEE-------EEEECTTSSEE------------EEEECTTSSCEEEEEE-TTTC------CEE-E-EECCSSCEEEEEE
T ss_pred Ccce-------eeEEcCCCCEE------------EEEEecCCCcEEEEEE-CCCC------cEE-E-eecCCCcccCEEE
Confidence 2244 78999999985 7776664 999999 4322 122 1 2567778999999
Q ss_pred CCCCCEEE-Ee-CC--CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CC--eEEEEECCC
Q 012535 242 NSDGETFI-SA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQ 314 (461)
Q Consensus 242 ~~~~~~l~-~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~iwd~~~ 314 (461)
+|+|+.|+ ++ .+ ..|++||+++++. . .+..|...+.+++|+|++ +.|++++. ++ .|.+||+.+
T Consensus 231 spdg~~la~~~~~~g~~~i~~~d~~~~~~-~--------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 231 SPDGSKLAFALSKTGSLNLYVMDLASGQI-R--------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCE-E--------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTS
T ss_pred cCCCCEEEEEEecCCCceEEEEECCCCCE-E--------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCC
Confidence 99999888 54 44 4599999985442 2 355677889999999999 88887776 44 678889887
Q ss_pred cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C---CeEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
++. ..+..+. ..+.+++|+|+|++|++++ + ..|++||+.+ ++. ..+..+. .+
T Consensus 301 ~~~-----~~l~~~~------------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~~---- 356 (415)
T 2hqs_A 301 GAP-----QRITWEG------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-LD---- 356 (415)
T ss_dssp SCC-----EECCCSS------------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-SC----
T ss_pred CCE-----EEEecCC------------CcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-Cc----
Confidence 653 2222222 5688999999999999854 3 5899999985 443 4444443 22
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCCC---eEEEEecCCCCccceeeccCCCCCccccccc
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMSLFLHFQ 451 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (461)
.+++|+|||++|++++.++ .|++||+..+. . ..+..+...+.....++
T Consensus 357 -----------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~-~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 357 -----------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-K-ARLPATDGQVKFPAWSP 407 (415)
T ss_dssp -----------EEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-E-EECCCSSSEEEEEEECC
T ss_pred -----------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-E-EEeeCCCCCCcCCcccc
Confidence 4899999999999988777 89999998543 2 45666666655544443
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.3e-24 Score=208.22 Aligned_cols=283 Identities=11% Similarity=0.112 Sum_probs=201.6
Q ss_pred EEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEe
Q 012535 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (461)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~ 121 (461)
+|+|++.++++++.|++|.+||..+++ ....+..+. . +..++|+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~-----------------------~~~~i~~g~------------~-~~~v~~s 187 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK-----------------------IVKVIDTGY------------A-VHISRMS 187 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC-----------------------EEEEEECST------------T-EEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce-----------------------EEEEEecCc------------c-cceEEEC
Confidence 488999999999999999999988765 334444222 2 8899999
Q ss_pred ecCCCcEEEEEeCCCeEEEEEc--cCCceeEEeeeecCCCccCCCCCccccccccCcceeec----CCCcccccccCCCC
Q 012535 122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA----NGGCGERNFGCASN 195 (461)
Q Consensus 122 p~~~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~g~~~~~~~~~~~~ 195 (461)
++++++++++.|++|++||+ .+++......... .+. .++|+| +|+.+
T Consensus 188 --pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~---------~p~-------~va~sp~~~~dg~~l--------- 240 (543)
T 1nir_A 188 --ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI---------EAR-------SVESSKFKGYEDRYT--------- 240 (543)
T ss_dssp --TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS---------EEE-------EEEECCSTTCTTTEE---------
T ss_pred --CCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC---------Ccc-------eEEeCCCcCCCCCEE---------
Confidence 67889999999999999999 7776655444221 122 789999 99985
Q ss_pred Ccccccc-CCCcEEeeeeecccCccccceeeEeee-cc--------c-ccceeeEEeCCCCCEEEEe--CCCeEEEEEcc
Q 012535 196 DSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYA-HA--------H-DYHINSISNNSDGETFISA--DDLRINLWNLE 262 (461)
Q Consensus 196 ~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~--------~-~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~ 262 (461)
++++ .++.|.+|| .... ++.+.+. .+ | ...+..+.++|++..++.+ .++.|.+||+.
T Consensus 241 ---~v~~~~~~~v~v~D-~~t~------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 241 ---IAGAYWPPQFAIMD-GETL------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp ---EEEEEESSEEEEEE-TTTC------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred ---EEEEccCCeEEEEe-cccc------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 6665 589999999 4322 2222221 11 2 2368899999987766554 69999999998
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEE-EEecCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
+.+... +. .+ .+...+..++|+|++ ++|+ ++..+++|.+||+.++++ +..+..... .|.
T Consensus 311 ~~~~l~-~~-----~i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l----~~~i~~g~~--------ph~ 370 (543)
T 1nir_A 311 DIDNLT-VT-----SI-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRL----SALVDVGKT--------PHP 370 (543)
T ss_dssp TSSSCE-EE-----EE-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEE----EEEEECSSS--------BCC
T ss_pred CCCcce-eE-----Ee-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeE----EEeeccCCC--------CCC
Confidence 655432 11 11 245668899999999 7555 555689999999999875 344432211 122
Q ss_pred cceeEEEEccC-CCEEEEec--CCeEEEEEccCC------CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 342 ASISDIKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 342 ~~v~~l~~s~~-g~~l~s~~--d~~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
+....+ ++|+ |.+++++. +++|.+||+.+. .+.++++.+|.... +.++++|++++
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~ 434 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSH 434 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCE
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCc
Confidence 333333 4676 66666664 599999999852 57788888887554 38999999999
Q ss_pred EEEec-------CCCeEEEEecCCCCcc
Q 012535 413 VATGS-------YSNLFRVFGCSEGSAE 433 (461)
Q Consensus 413 l~s~~-------~dg~i~iw~~~~~~~~ 433 (461)
|++++ .++.|.|||+.+++..
T Consensus 435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 435 LYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EEEecCCCCCcccCceEEEEECCCCCCC
Confidence 99987 2789999999998765
No 129
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=5.9e-24 Score=199.69 Aligned_cols=238 Identities=11% Similarity=0.113 Sum_probs=179.5
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|...|.+++|+++++++++++.|+.|++||+.+++ ....+..|.
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~-----------------------~~~~~~~~~----------- 211 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA-----------------------YKATVDLTG----------- 211 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC-----------------------EEEEEECSS-----------
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce-----------------------EEEEEcCCC-----------
Confidence 3688899999999999999999999999999998764 334555666
Q ss_pred ccceEEEEEeecCCCcEEEE-EeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 112 EEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..+.+++|+ +++.++++ ++.|+.|++||+.+++........ +.+. .++|+|+|+.+
T Consensus 212 -~~~~~~~~~--~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------~~~~-------~~~~~~~g~~l---- 268 (433)
T 3bws_A 212 -KWSKILLYD--PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI---------GLPR-------GLLLSKDGKEL---- 268 (433)
T ss_dssp -SSEEEEEEE--TTTTEEEEEETTTTEEEEEETTTTEEEEECCCC---------SEEE-------EEEECTTSSEE----
T ss_pred -CCeeEEEEc--CCCCEEEEEecCCCcEEEEECCCCcEEEEecCC---------CCce-------EEEEcCCCCEE----
Confidence 669999999 45667755 458999999999988765544332 1122 78999999875
Q ss_pred cCCCCCcccccc--------CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE-EEe-CCCeEEEEE
Q 012535 191 GCASNDSSFPPG--------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWN 260 (461)
Q Consensus 191 ~~~~~~~~~~~~--------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd 260 (461)
++++ .|+.|++|| +... +.... ..|...+.+++|+|+++.+ +++ .++.|++||
T Consensus 269 --------~~~~~~~~~~~~~dg~i~~~d-~~~~------~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 269 --------YIAQFSASNQESGGGRLGIYS-MDKE------KLIDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp --------EEEEEESCTTCSCCEEEEEEE-TTTT------EEEEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred --------EEEECCCCccccCCCeEEEEE-CCCC------cEEee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 5555 588999999 4321 12222 2445678899999999755 555 799999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec---------------CCeEEEEECCCccccccccccc
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------------KGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
+++.+.... + .+...+.+++|+|++ +++++++. ||.|++||+.+++. +..+
T Consensus 332 ~~~~~~~~~--------~-~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~----~~~~ 397 (433)
T 3bws_A 332 LKEKKVQKS--------I-PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV----KEFW 397 (433)
T ss_dssp TTTTEEEEE--------E-ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE----EEEE
T ss_pred CCCCcEEEE--------e-cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcE----EEEe
Confidence 985543322 1 256778999999999 88887776 57999999988765 3344
Q ss_pred ccccCCCccccccccccceeEEEEccCCCEEEEe-c-CCeEEEEEcc
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDIN 370 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~-d~~i~vwd~~ 370 (461)
..+ ..+.+++|+|+|++|+++ . ++.|++|+++
T Consensus 398 ~~~-------------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 EAG-------------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECS-------------SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cCC-------------CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 332 468999999999999875 3 6999999986
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=7.8e-22 Score=178.26 Aligned_cols=288 Identities=9% Similarity=0.091 Sum_probs=182.4
Q ss_pred EEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 41 IEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 41 ~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
..|.++++ .+++++.++.|.+||..+++. ...+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI-----------------------LNQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce-----------------------eeeEEccC------------Ccc-eEE
Confidence 34666555 477778899999999987753 22233333 346 999
Q ss_pred EeecCCCcEEEEEe-CCCeEEEEEccCCce-eEEeeeecCCCccCCCCCccccccccCc-ceeecCCCcccccccCCCCC
Q 012535 120 WCQSANSALYLLST-NDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIP-KSYMANGGCGERNFGCASND 196 (461)
Q Consensus 120 ~~p~~~~~~l~~~~-~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~ 196 (461)
|+ ++++++++++ .++.|.+||+.+++. .........+ .. ++|+|+|+.+
T Consensus 47 ~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l---------- 98 (331)
T 3u4y_A 47 IT--SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS----------------MADVDITPDDQFA---------- 98 (331)
T ss_dssp EC--SSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC----------------CCCEEECTTSSEE----------
T ss_pred Ec--CCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC----------------ccceEECCCCCEE----------
Confidence 99 5676666665 489999999998876 4443332211 14 7999999985
Q ss_pred ccccccCC-C--cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCe-EEEEEccCCCCceee
Q 012535 197 SSFPPGGV-S--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFNI 270 (461)
Q Consensus 197 ~~~~~~~~-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~-i~iwd~~~~~~~~~~ 270 (461)
+++..+ + .|.+|| +.. .+....+ .....+.+++|+|++++++++ .++. |.+|++.........
T Consensus 99 --~~~~~~~~~~~i~v~d-~~~------~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 99 --VTVTGLNHPFNMQSYS-FLK------NKFISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp --EECCCSSSSCEEEEEE-TTT------TEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred --EEecCCCCcccEEEEE-CCC------CCeEEEE--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 544444 3 899999 422 1222222 223456899999999866554 5677 999999854433221
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCe-EEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNM-LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
. . ........+..++|+|++ ++ ++++..++.|++||+.+++... .+..+... ..+..++|
T Consensus 168 ~-~---~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~~-------------~~~~~~~~ 228 (331)
T 3u4y_A 168 G-Q---EFISGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENIT-LLNAVGTN-------------NLPGTIVV 228 (331)
T ss_dssp E-E---EEECSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSCE-EEEEEECS-------------SCCCCEEE
T ss_pred C-C---ccccCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCcccc-eeeeccCC-------------CCCceEEE
Confidence 0 0 111234557899999999 64 4555578999999998776410 01222222 45788999
Q ss_pred ccCCCEEEEec--CCeEEEEEccCCCCC--eeEEeeccCccccccccccCCCccceeeEEEecCCCEEEE-ecCCCeEEE
Q 012535 350 ARNGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRV 424 (461)
Q Consensus 350 s~~g~~l~s~~--d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~i 424 (461)
+|||++|++++ ++.|.+||+.+ ++. +..+..+-... .........++|+||+++|++ +..++.|.+
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKV 299 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEE
Confidence 99999887654 48899999985 544 33322220000 001111126899999998765 455679999
Q ss_pred EecCCCC
Q 012535 425 FGCSEGS 431 (461)
Q Consensus 425 w~~~~~~ 431 (461)
||+....
T Consensus 300 ~d~~~~~ 306 (331)
T 3u4y_A 300 FTISGKV 306 (331)
T ss_dssp EETTSCE
T ss_pred EEecCCc
Confidence 9998653
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.6e-23 Score=208.88 Aligned_cols=308 Identities=9% Similarity=0.071 Sum_probs=191.5
Q ss_pred ccceEEEEEcCCCCEEEEeec-CC-----cEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
...|.+++|||||++||+++. |+ .|++||+.+++.. ..+..... .|+...+.. . .....-...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~----~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR----LLVDSKVV----LPGTETLSD-E--EKARRERQR 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE----EEECGGGT----C---------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee----Eccchhhc----ccccccccc-h--hhhhhhhhh
Confidence 457999999999999999998 88 8999999876532 00000000 000000000 0 000000000
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCC---ceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
......|.+++|+ +||++|++++. +.|.+||+.++ +...+... .+.+. .++|+|+|+.
T Consensus 105 ~~~~~~v~~~~~S--pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~---------~~~~~-------~~~~SPDG~~ 165 (741)
T 2ecf_A 105 IAAMTGIVDYQWS--PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG---------EGFAT-------DAKLSPKGGF 165 (741)
T ss_dssp --CCEESCCCEEC--TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS---------SSCEE-------EEEECTTSSE
T ss_pred hccccCcceeEEC--CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC---------Ccccc-------cccCCCCCCE
Confidence 0000237889999 67889998887 99999999887 44332211 12233 6799999998
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccccc----------------ceeeEEeCCCCCEEE
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY----------------HINSISNNSDGETFI 249 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~i~~~~~~~~l~ 249 (461)
+ +.++ ++.|.+|| +... ...+.. ..+.. .+..++|+|||+.|+
T Consensus 166 l------------a~~~-~~~i~~~d-~~~g------~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~ 224 (741)
T 2ecf_A 166 V------------SFIR-GRNLWVID-LASG------RQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA 224 (741)
T ss_dssp E------------EEEE-TTEEEEEE-TTTT------EEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE
T ss_pred E------------EEEe-CCcEEEEe-cCCC------CEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEE
Confidence 5 5444 46899999 4321 111111 22221 247899999999998
Q ss_pred Ee-CCC---------------------------------eEEEEEccC-CCCceeeeccCCCCCCCCCcceEEEEEeCCC
Q 012535 250 SA-DDL---------------------------------RINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTH 294 (461)
Q Consensus 250 ~~-~d~---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 294 (461)
++ .|+ .|.+||+.+ ++. ..+. ....+...+..++| |+|
T Consensus 225 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~-----~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 225 YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWID-----LGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEEC-----CCSCSSEEEEEEEE-EET
T ss_pred EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-EEec-----CCCCcceEEEEEEe-CCC
Confidence 87 444 788889875 443 2211 11247788999999 999
Q ss_pred CCeEEEEec-----CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEE
Q 012535 295 CNMLAYSSS-----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD 368 (461)
Q Consensus 295 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd 368 (461)
+.|++++. +..|++||+.+++. ...+..+... ....+..++|+|||+++++++ ++.++||.
T Consensus 298 -~~l~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~~~--------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 298 -QHLSFQRQSRDQKKLDLVEVTLASNQQ----RVLAHETSPT--------WVPLHNSLRFLDDGSILWSSERTGFQHLYR 364 (741)
T ss_dssp -TEEEEEEEETTSSEEEEEEEETTTCCE----EEEEEEECSS--------CCCCCSCCEECTTSCEEEEECTTSSCEEEE
T ss_pred -CEEEEEEecccCCeEEEEEEECCCCce----EEEEEcCCCC--------cCCcCCceEECCCCeEEEEecCCCccEEEE
Confidence 78877654 56899999998764 2222222100 001356889999999888776 47777877
Q ss_pred ccCCCCCeeEEeeccCccccccccccCCCccceeeE-EEecCCCEEE-EecCCC--eEEEEecCC
Q 012535 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC-CLSGDGGRVA-TGSYSN--LFRVFGCSE 429 (461)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iw~~~~ 429 (461)
++..+. ...+..|...+ ..+ .|+||++.|+ +++.++ .++||++..
T Consensus 365 ~~~~~~-~~~l~~~~~~v---------------~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 365 IDSKGK-AAALTHGNWSV---------------DELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECSSSC-EEESCCSSSCE---------------EEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EcCCCC-eeeeeecceEE---------------EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 764345 66666655433 355 5999998775 455555 899999875
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=3.9e-22 Score=185.44 Aligned_cols=261 Identities=10% Similarity=0.019 Sum_probs=186.8
Q ss_pred cccccceEEEEEcC--------------CCCEEEEeecC------CcEEEEEcCCCCCCCCcccccccccccccCCcccc
Q 012535 32 VQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (461)
Q Consensus 32 ~~h~~~V~~~~~s~--------------~g~~l~tg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (461)
..|...+..+++++ .+..++.++.+ +.|++||+.+..
T Consensus 114 ~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------- 170 (415)
T 2hqs_A 114 KVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------- 170 (415)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-----------------------
T ss_pred EcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-----------------------
Confidence 35666676666664 25667766654 799999987543
Q ss_pred ccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCC---eEEEEEccCCceeEEeeeecCCCccCCCCCcc
Q 012535 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (461)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (461)
...+.+|. ..|.+++|+ ++|++|++++.++ .|++||+.+++...+... .+.+.
T Consensus 171 -~~~l~~~~------------~~v~~~~~S--pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~---------~~~~~ 226 (415)
T 2hqs_A 171 -QFVVHRSP------------QPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---------PRHNG 226 (415)
T ss_dssp -CEEEEEES------------SCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC---------SSCEE
T ss_pred -CEEEeCCC------------CcceeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC---------CCccc
Confidence 23556676 679999999 5688999998875 999999998876543322 12233
Q ss_pred ccccccCcceeecCCCcccccccCCCCCccccccCCCc--EEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC
Q 012535 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (461)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (461)
+++|+|+|+.+ +++++.++. |.+|| +... .. .. +..|...+.+++|+|+++
T Consensus 227 -------~~~~spdg~~l-----------a~~~~~~g~~~i~~~d-~~~~------~~-~~-l~~~~~~~~~~~~spdg~ 279 (415)
T 2hqs_A 227 -------APAFSPDGSKL-----------AFALSKTGSLNLYVMD-LASG------QI-RQ-VTDGRSNNTEPTWFPDSQ 279 (415)
T ss_dssp -------EEEECTTSSEE-----------EEEECTTSSCEEEEEE-TTTC------CE-EE-CCCCSSCEEEEEECTTSS
T ss_pred -------CEEEcCCCCEE-----------EEEEecCCCceEEEEE-CCCC------CE-Ee-CcCCCCcccceEECCCCC
Confidence 78999999975 235655554 88888 4221 11 12 256778899999999999
Q ss_pred EEEEe-C-CC--eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECCCccccc
Q 012535 247 TFISA-D-DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCD 319 (461)
Q Consensus 247 ~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~ 319 (461)
.|+.+ . ++ .|.+||+.+++. . .+..+...+.+++|+|+| ++|++++.+ ..|++||+.+++.
T Consensus 280 ~l~~~s~~~g~~~i~~~d~~~~~~-~--------~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~-- 347 (415)
T 2hqs_A 280 NLAFTSDQAGRPQVYKVNINGGAP-Q--------RITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-- 347 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCC-E--------ECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE--
T ss_pred EEEEEECCCCCcEEEEEECCCCCE-E--------EEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE--
Confidence 88876 4 45 677778875442 2 233456788999999999 888888765 5899999988763
Q ss_pred ccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CC---eEEEEEccCCCCCeeEEeeccCccccccccccC
Q 012535 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM---TLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 395 (461)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (461)
..+..+ ..+.+++|+|+|++|++++ ++ .|++||+. +.....+..|.+.+
T Consensus 348 ---~~l~~~-------------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~--g~~~~~l~~~~~~v--------- 400 (415)
T 2hqs_A 348 ---QVLSST-------------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV--------- 400 (415)
T ss_dssp ---EECCCS-------------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT--SCCEEECCCSSSEE---------
T ss_pred ---EEecCC-------------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC--CCcEEEeeCCCCCC---------
Confidence 222222 2588999999999998865 43 79999986 57778888887765
Q ss_pred CCccceeeEEEecCCC
Q 012535 396 DSIFDKFECCLSGDGG 411 (461)
Q Consensus 396 ~~~~~v~~~~~s~~~~ 411 (461)
.+++|+|...
T Consensus 401 ------~~~~~~~~~~ 410 (415)
T 2hqs_A 401 ------KFPAWSPYLH 410 (415)
T ss_dssp ------EEEEECCCCC
T ss_pred ------cCCccccccc
Confidence 4999998643
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.4e-21 Score=177.44 Aligned_cols=254 Identities=10% Similarity=0.095 Sum_probs=162.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCC-CeEEEEEcc--CCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTND-KTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d-~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
..+.+++|+ ++++++++++.+ +.|.+|++. +++.......... +.+. .++|+|+|+.+
T Consensus 38 ~~~~~~~~s--pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~~~s~dg~~l--- 98 (343)
T 1ri6_A 38 GQVQPMVVS--PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-------GSLT-------HISTDHQGQFV--- 98 (343)
T ss_dssp SCCCCEEEC--TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-------SCCS-------EEEECTTSSEE---
T ss_pred CCCceEEEC--CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-------CCCc-------EEEEcCCCCEE---
Confidence 558899999 567788888776 999999998 5555443333211 1122 78999999975
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (461)
++++..++.|.+|| +.. . ......... . ....+.+++|+|+++.++++ .++.|.+||+.+....
T Consensus 99 --------~~~~~~~~~i~~~d-~~~--~-~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 99 --------FVGSYNAGNVSVTR-LED--G-LPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp --------EEEETTTTEEEEEE-EET--T-EEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred --------EEEecCCCeEEEEE-CCC--C-ccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 34445688999999 531 1 112222222 2 23458899999999977766 6999999999863333
Q ss_pred eeee--ccCCCCCCCCCcceEEEEEeCCCCCeEE-EEecCCeEEEEECCC--cccccccccccccccCCCcccccccccc
Q 012535 268 FNIV--DVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 268 ~~~~--~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
.... .. .. .....+..++|+|++ ++++ ++..++.|.+||+.. +.... ...+..... -.....
T Consensus 165 ~~~~~~~~---~~-~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~~--~~~~~~~~~------~~~~~~ 231 (343)
T 1ri6_A 165 VAQDPAEV---TT-VEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDMMPE------NFSDTR 231 (343)
T ss_dssp EEEEEEEE---EC-STTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCEE--EEEEECSCT------TCCSCC
T ss_pred eeeccccc---cc-CCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEE--EeeccccCc------cccccC
Confidence 2111 00 11 123567899999999 6554 555899999999954 32110 111110000 000113
Q ss_pred ceeEEEEccCCCEEEEe-c-CCeEEEEEccCCCC---CeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec
Q 012535 343 SISDIKFARNGRHILSR-D-YMTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~-~-d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (461)
.+..++|+|+|++|+++ . ++.|.+||+...+. .+..+..+.. + ..++|+|++++|++++
T Consensus 232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~---------------~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-P---------------RGFNVDHSGKYLIAAG 295 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-C---------------CCEEECTTSSEEEEEC
T ss_pred CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-c---------------ceEEECCCCCEEEEec
Confidence 57789999999988754 3 59999999973222 2333333332 2 3899999999888777
Q ss_pred -CCCeEEEEecC
Q 012535 418 -YSNLFRVFGCS 428 (461)
Q Consensus 418 -~dg~i~iw~~~ 428 (461)
.++.|.+|+++
T Consensus 296 ~~~~~v~v~~~d 307 (343)
T 1ri6_A 296 QKSHHISVYEIV 307 (343)
T ss_dssp TTTCEEEEEEEE
T ss_pred CCCCeEEEEEEc
Confidence 68999999655
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.3e-22 Score=203.36 Aligned_cols=294 Identities=11% Similarity=0.063 Sum_probs=185.7
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
..+.+++|+|||+++++ +.||+|++||+.+++. ...+..|... ...|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----------------------~~~~~~~~~~---------~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----------------------TVLIEGKKIE---------SLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----------------------EEEECTTTTT---------TTTC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----------------------EEEecccccc---------cccc
Confidence 34678999999998776 7899999999988753 2233444300 0138
Q ss_pred EEEEEeecCCCcEEEEEeCC---------CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
.+++|+ +||++|++++.+ +.|.+||+.+++...+.....+ ...+. .++|+|+|+.+
T Consensus 64 ~~~~~S--pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~------~~~~~-------~~~~SPdG~~l 128 (723)
T 1xfd_A 64 IRYEIS--PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS------NAKLQ-------YAGWGPKGQQL 128 (723)
T ss_dssp SEEEEC--TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC------SCCCS-------BCCBCSSTTCE
T ss_pred ceEEEC--CCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc------ccccc-------ccEECCCCCEE
Confidence 999999 678899998764 7888999998876332221110 11122 67999999985
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccccc------------------ceeeEEeCCCCCEE
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY------------------HINSISNNSDGETF 248 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~l 248 (461)
+.++. +.|++|+ +...+. .+.. ..+.. .+.+++|+|||+.|
T Consensus 129 ------------a~~~~-~~i~~~~-~~~g~~------~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 129 ------------IFIFE-NNIYYCA-HVGKQA------IRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp ------------EEEET-TEEEEES-SSSSCC------EEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred ------------EEEEC-CeEEEEE-CCCCce------EEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 55544 7899998 432211 1111 22222 23789999999999
Q ss_pred EEe-CCC----------------------------------eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC
Q 012535 249 ISA-DDL----------------------------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (461)
Q Consensus 249 ~~~-~d~----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 293 (461)
+++ .++ .|++||+.+++....+.. +..+..+...+..++|+|+
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP--PDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC--CCCGGGSSEEEEEEEESSS
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC--CccCCCccceeEEEEEeCC
Confidence 887 332 788899876553222110 0112224678899999999
Q ss_pred CCCeEEEEecC----CeEEEEECCCcccccccccccccccCCCccccccccccce----eEEEEccCCCEEEEe--c-CC
Q 012535 294 HCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI----SDIKFARNGRHILSR--D-YM 362 (461)
Q Consensus 294 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~l~~s~~g~~l~s~--~-d~ 362 (461)
| ++|++.... ..|++||+.+++. ...+..+. ...+ ..++|+|||+.|+.. . ++
T Consensus 266 g-~~l~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~-----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 266 T-KVAVTWLNRAQNVSILTLCDATTGVC----TKKHEDES-----------EAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp S-EEEEEEEETTSCEEEEEEEETTTCCE----EEEEEEEC-----------SSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred C-eEEEEEEcCCCCeEEEEEEeCCCCcc----eEEEEecc-----------CCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 9 788766543 5799999988764 22222211 0222 378999999977753 3 36
Q ss_pred ------eEEEEEccCCCCC--eeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC---CeEEEEecCCC
Q 012535 363 ------TLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEG 430 (461)
Q Consensus 363 ------~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 430 (461)
.|++||+...+.. ...+..+...+. ..++|+|||+.|+..+.+ +.++||++...
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~--------------~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT--------------KILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE--------------EEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEE--------------eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5666773222331 344432221110 136899999998766554 78999998753
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=3.9e-22 Score=176.96 Aligned_cols=256 Identities=11% Similarity=0.098 Sum_probs=173.8
Q ss_pred EeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEE
Q 012535 52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL 131 (461)
Q Consensus 52 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~ 131 (461)
.++.|+.|++||+.+++. ..+..|. ..|.+++|+ +++.+|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~------------------------~~~~~~~------------~~v~~~~~s--pdg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM------------------------RVVWQTP------------ELFEAPNWS--PDGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEE------------------------EEEEEES------------SCCEEEEEC--TTSSEEEE
T ss_pred CCCcceeEEEEeCCCCce------------------------eeeccCC------------cceEeeEEC--CCCCEEEE
Confidence 346789999999987642 1344455 679999999 56778888
Q ss_pred EeCCCeEEEEEccC-CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcccccc--CCCcEE
Q 012535 132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG--GVSSLR 208 (461)
Q Consensus 132 ~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~i~ 208 (461)
++ ++.|.+||+.+ ++.......+. ...+. .++|+|+|+.+ +++. .++...
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~~~~~-------~~~~~-------~~~~spdg~~l------------~~~~~~~~~~~~ 111 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVDTGFA-------TICNN-------DHGISPDGALY------------AISDKVEFGKSA 111 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECCCTTC-------CCBCS-------CCEECTTSSEE------------EEEECTTTSSCE
T ss_pred Ec-CCeEEEEeCCCCCCceEeccccc-------ccccc-------ceEECCCCCEE------------EEEEeCCCCcce
Confidence 76 88999999998 76554432210 11222 68999999985 6655 445677
Q ss_pred eeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE-Ee-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceE
Q 012535 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (461)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (461)
+|. +..... . ...+ ..+ ..+..++|+|+++.|+ ++ .++.+++|+++....... .+..+...+.
T Consensus 112 l~~-~~~~~~-~----~~~~-~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~ 176 (297)
T 2ojh_A 112 IYL-LPSTGG-T----PRLM-TKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-------RLTHGEGRND 176 (297)
T ss_dssp EEE-EETTCC-C----CEEC-CSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-------ECCCSSSCEE
T ss_pred EEE-EECCCC-c----eEEe-ecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-------EcccCCCccc
Confidence 776 322111 1 1111 222 3488899999999887 55 689999999754332222 2445677899
Q ss_pred EEEEeCCCCCeEEEEe-cCCeEEEEECCC-cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C--
Q 012535 287 SAEFHPTHCNMLAYSS-SKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-- 361 (461)
Q Consensus 287 ~v~~~p~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-- 361 (461)
+++|+|++ +.|++++ .++.+++|++.. +.. +..+..+ ...+..++|+|+|++|++++ +
T Consensus 177 ~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 177 GPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSS----VERITDS------------AYGDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp EEEECTTS-SEEEEEECTTSSCEEEEEETTSSC----EEECCCC------------SEEEEEEEECTTSSEEEEEEEETT
T ss_pred cceECCCC-CEEEEEecCCCCccEEEECCCCCC----cEEEecC------------CcccCCeEECCCCCEEEEEEcCCC
Confidence 99999999 7666655 589999998762 221 2333332 26789999999999998754 3
Q ss_pred ---------CeEEEEEccCCCCCee--EEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCC
Q 012535 362 ---------MTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (461)
Q Consensus 362 ---------~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (461)
+.|++||+.. ++... .+.+|...+ ..++|+|++++|++++.|.
T Consensus 240 ~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEECC
T ss_pred CCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEecc
Confidence 4699999985 55433 333555544 3789999999998887654
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=2.2e-21 Score=175.61 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=183.7
Q ss_pred CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccccc-CCCcchhhcccccccc-ceEEEEEeecCC
Q 012535 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN 125 (461)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~v~~~p~~~ 125 (461)
++|++++.++.|.+||..+++. ...+. ++. . .+..++|+ ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~s--~d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMVA--PG 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEEC--TT
T ss_pred cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEEc--CC
Confidence 4789999999999999887642 22222 221 1 37889999 55
Q ss_pred CcEE-EEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcccccc--
Q 012535 126 SALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-- 202 (461)
Q Consensus 126 ~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-- 202 (461)
++++ +++..++.|.+||+.+++............ ....+..++|+|+|+.+ +++.
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l------------~~~~~~ 102 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTL------------AIYESP 102 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEE------------EEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----------ccccccceEECCCCCEE------------EEEecc
Confidence 6555 455678999999999887665544321000 00011278999999875 5553
Q ss_pred ----------CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeec
Q 012535 203 ----------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 203 ----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (461)
.++.|.+|| +.. .+....+ . ....+.+++|+|++++|+++ ++.|.+||+.+.+....+
T Consensus 103 ~~~~~~~~~~~~~~i~v~d-~~~------~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~-- 170 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYD-AET------LSRRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK-- 170 (337)
T ss_dssp EEECSSCEEECCCEEEEEE-TTT------TEEEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE--
T ss_pred cccccccccccCceEEEEE-CCC------CcEEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee--
Confidence 579999999 422 1222222 1 23457889999999988887 688999999865433221
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCC-----------------------eEEEEECCCcccccccccccccc
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
....... .+.|+|++ ..++..+ .++ .|.+||+.+++.. ...+..
T Consensus 171 ----~~~~~~~---~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~- 238 (337)
T 1pby_B 171 ----PIQSWEA---ETYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRI- 238 (337)
T ss_dssp ----CSTTTTT---TTBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEE-
T ss_pred ----eccccCC---CceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCC-
Confidence 1111112 23788988 5444333 333 4689999887642 111111
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
+...+.+++|+|+|++|+++ ++.|++||+.+ ++.+..+..+... .+++|+|
T Consensus 239 -----------~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~ 289 (337)
T 1pby_B 239 -----------MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------------YSVNVST 289 (337)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CEEEECT
T ss_pred -----------CCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----------------eeEEECC
Confidence 22567889999999999988 68999999985 6666666544322 3899999
Q ss_pred CCCEEEEecCCCeEEEEecCCCCcc
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
++++|++++.++.|++||+.+++..
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEE
Confidence 9999999999999999999988765
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=5.1e-21 Score=173.65 Aligned_cols=260 Identities=11% Similarity=0.129 Sum_probs=164.7
Q ss_pred ccccccceEEEEEcCCCCEEEEeecC-CcEEEEEcC--CCCCCCCcccccccccccccCCccccccccccCCCcchhhcc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (461)
...|...+.+++|+|+|++|++++.+ +.|.+|++. ++.. +....+..+
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~-------- 83 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------TFAAESALP-------- 83 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---------------------EEEEEEECS--------
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---------------------eeccccccC--------
Confidence 45677889999999999999988876 999999987 3321 112222222
Q ss_pred ccccccceEEEEEeecCCCcEEEEEe-CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 108 SLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..+..++|+ ++++++++++ .++.|.+|++..+........... ...+. .++|+|+|+.+
T Consensus 84 -----~~~~~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~-------~~~~s~dg~~l 143 (343)
T 1ri6_A 84 -----GSLTHISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG------LDGCH-------SANISPDNRTL 143 (343)
T ss_dssp -----SCCSEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC------CTTBC-------CCEECTTSSEE
T ss_pred -----CCCcEEEEc--CCCCEEEEEecCCCeEEEEECCCCccccccccccC------CCCce-------EEEECCCCCEE
Confidence 347899999 5677777765 589999999953322111111100 01122 78999999875
Q ss_pred cccccCCCCCcccccc-CCCcEEeeeeecccCccccceee-EeeecccccceeeEEeCCCCCEEEE-e-CCCeEEEEEcc
Q 012535 187 ERNFGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCR-RIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLE 262 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~ 262 (461)
++++ .++.|.+|| +..... ..... ..........+..++|+|+++++++ + .++.|.+|+++
T Consensus 144 ------------~~~~~~~~~v~~~d-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 144 ------------WVPALKQDRICLFT-VSDDGH--LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp ------------EEEEGGGTEEEEEE-ECTTSC--EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred ------------EEecCCCCEEEEEE-ecCCCc--eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 5554 889999999 533111 11111 0111223357888999999997655 4 69999999996
Q ss_pred CCCCce---eeeccCCCCCCCCCcceEEEEEeCCCCCeEE-EEecCCeEEEEECCC--cccccccccccccccCCCcccc
Q 012535 263 ISNQSF---NIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSF 336 (461)
Q Consensus 263 ~~~~~~---~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~ 336 (461)
...... ......+.. ......+..++|+|++ +.|+ ++..++.|.+||+.. +.. ..+..+...
T Consensus 209 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~-------- 276 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPEN-FSDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVL--SKEGFQPTE-------- 276 (343)
T ss_dssp CTTSCCEEEEEEECSCTT-CCSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCE--EEEEEEECS--------
T ss_pred CCCCcEEEEeeccccCcc-ccccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCce--EEeeeecCC--------
Confidence 422111 111100000 0123457789999999 6665 555799999999983 221 112222222
Q ss_pred ccccccceeEEEEccCCCEEEEec--CCeEEEEEccC
Q 012535 337 FTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM 371 (461)
Q Consensus 337 ~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~ 371 (461)
..+.+++|+|+|++|++++ ++.|.+|+++.
T Consensus 277 -----~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 277 -----TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp -----SSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred -----CccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 2378899999999888865 49999997653
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.1e-21 Score=203.64 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=123.6
Q ss_pred cccceeeEEeC-CCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCc-ceEEEEEeCCCCCeEEEEecCCeEE-
Q 012535 232 HDYHINSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE-VITSAEFHPTHCNMLAYSSSKGSIR- 308 (461)
Q Consensus 232 ~~~~v~~i~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~dg~i~- 308 (461)
|...+.+++|+ |+|+.|+++.++.|.+|++.... .. .+..+.. .+..++|+ ++ +.|++++.++.+.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~-~~--------~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTY-VL--------KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLG 362 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSB-EE--------ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEE
T ss_pred cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCc-eE--------EccCCCcceEEeeeEc-CC-CeEEEEECCCceEE
Confidence 45578999999 99999998878899999987543 22 2344666 89999999 98 8888888888888
Q ss_pred EEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccc
Q 012535 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (461)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~ 387 (461)
+||+..+.. ..+..+ ...+..++|+|||++|++++ ++.|++||+.+ ++....+..|...+
T Consensus 363 ~~d~~~~~~-----~~l~~~------------~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v- 423 (1045)
T 1k32_A 363 IYDYRTGKA-----EKFEEN------------LGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMI- 423 (1045)
T ss_dssp EEETTTCCE-----EECCCC------------CCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCC-
T ss_pred EEECCCCCc-----eEecCC------------ccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCc-
Confidence 999887653 222222 26799999999999999876 59999999985 77666666776654
Q ss_pred cccccccCCCccceeeEEEecCCCEEEEecCCC----------eEEEEecCCCC
Q 012535 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----------LFRVFGCSEGS 431 (461)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------~i~iw~~~~~~ 431 (461)
..++|+|||++|++++.++ .|++||+.+++
T Consensus 424 --------------~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 424 --------------TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp --------------CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred --------------cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 3899999999999887654 99999999875
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.1e-20 Score=172.32 Aligned_cols=284 Identities=9% Similarity=0.036 Sum_probs=191.5
Q ss_pred ccccceEEEEEcCCCCEEEEeec-------CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhh
Q 012535 33 QEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (461)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~------ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHND------ 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEES------
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEecC------
Confidence 34567889999999998888874 568999998876521 222211
Q ss_pred ccccccccceEEEEEeecCCCcEEEE-EeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
..+..++|+ ++++++++ ...++.|.+||..+++............... . ....+..++|+|+|+
T Consensus 89 -------~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~s~dg~ 153 (353)
T 3vgz_A 89 -------LKPFGATIN--NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE--V----RPLQPRELVADDATN 153 (353)
T ss_dssp -------SCCCSEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS--C----CCCEEEEEEEETTTT
T ss_pred -------CCcceEEEC--CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc--c----CCCCCceEEECCCCC
Confidence 336788999 55665555 4568999999999988766655432110000 0 000112689999999
Q ss_pred cccccccCCCCCcccccc--CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEc
Q 012535 185 CGERNFGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 261 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~ 261 (461)
.+ ++++ .++.|.+|| ... .+....+ ..+...+.+++|+|+++.++++ .++.|.+||+
T Consensus 154 ~l------------~~~~~~~~~~i~~~d-~~~------~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 154 TV------------YISGIGKESVIWVVD-GGN------IKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDT 213 (353)
T ss_dssp EE------------EEEEESSSCEEEEEE-TTT------TEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred EE------------EEEecCCCceEEEEc-CCC------CceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence 75 4443 578899999 322 2222222 3344568899999999999888 7999999999
Q ss_pred cCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
.+.+....+. . ...++...+..++|+|++ +.+++++ .++.|.+||+.+++. +..+...
T Consensus 214 ~~~~~~~~~~-~---~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~------------ 272 (353)
T 3vgz_A 214 ADNKILSRKK-L---LDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNI----LAKVAAP------------ 272 (353)
T ss_dssp TTTEEEEEEE-C---CCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCE----EEEEECS------------
T ss_pred CCCeEEEEEE-c---CCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEcC------------
Confidence 8655433221 1 112245568899999999 6555554 459999999988765 2333322
Q ss_pred ccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 341 IASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
....++|+|+|++++.++ ++.|.+||+.+ ++.+..+...... ..++|+|||++|+.+..
T Consensus 273 --~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 273 --ESLAVLFNPARNEAYVTHRQAGKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVK 333 (353)
T ss_dssp --SCCCEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEE
T ss_pred --CCceEEECCCCCEEEEEECCCCeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEc
Confidence 125689999999776643 59999999986 7777666654432 38999999997776665
Q ss_pred CC
Q 012535 419 SN 420 (461)
Q Consensus 419 dg 420 (461)
++
T Consensus 334 ~~ 335 (353)
T 3vgz_A 334 QK 335 (353)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=6.6e-22 Score=197.55 Aligned_cols=307 Identities=12% Similarity=0.060 Sum_probs=187.9
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
..|.+++|||| ++++.+. ++.|++||+.+++. ..+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV------------------------TYLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence 56999999999 6666654 59999999987642 1233343 458
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccC-----CceeEEeeeecCCCccCCCCC-ccc-cccccCcceeecCCCcccc
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGP-IFG-SHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~-v~~-~~~~~~~~~~~~~g~~~~~ 188 (461)
.+++|+ +||++|+++ .|+.|++|++.+ ++...+....... ...+. +.. ......+++|+|+|+.+..
T Consensus 124 ~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~---~~~g~~~~~ee~~~~~~~~~SpDg~~la~ 197 (706)
T 2z3z_A 124 ASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET---LVYGQAVHQREFGIEKGTFWSPKGSCLAF 197 (706)
T ss_dssp TTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT---EEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred cCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC---eEcccchhhhhcCCCceEEECCCCCEEEE
Confidence 889999 568888884 789999999998 7655433222110 00000 000 0000127899999998622
Q ss_pred cccCCCC-------------------Ccccc--ccCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCC
Q 012535 189 NFGCASN-------------------DSSFP--PGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGE 246 (461)
Q Consensus 189 ~~~~~~~-------------------~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~ 246 (461)
....... .+-.. ...+..|.+|| +... ....... ..|...+.+++|+|+|+
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d-~~~~------~~~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH-LATG------KTVYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE-TTTT------EEEECCCCSCTTCEEEEEEECTTSS
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE-CCCC------ceEeeccCCCCceeEeeEEEECCCC
Confidence 1100000 00000 01446788888 4221 1111111 25667899999999999
Q ss_pred EEEEe-CCC-----eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC--CCCCeEEEEecCCeEEEEECC-Cccc
Q 012535 247 TFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMR-QSAL 317 (461)
Q Consensus 247 ~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg~i~iwd~~-~~~~ 317 (461)
.|+++ .++ .|.+||+.+++....+.... .......+..++|+| ++ ++++++..|+.++||++. .+..
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET---DKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE---CSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc---CCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCE
Confidence 88886 454 89999998663333221100 001112346789999 98 899999999999999875 3322
Q ss_pred ccccccccccccCCCccccccccccceeE-EEEccCCCEEEEe-cC-C----eEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DY-M----TLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~g~~l~s~-~d-~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
+..+..+. ..+.. ++|+|+|+.|+.+ ++ + .|+.||+.. ++ ...+. +...
T Consensus 347 ----~~~l~~~~------------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~----- 402 (706)
T 2z3z_A 347 ----IRQVTKGE------------WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESG----- 402 (706)
T ss_dssp ----EEECCCSS------------SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSS-----
T ss_pred ----EEecCCCC------------eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCc-----
Confidence 23333322 45766 7999999988764 33 4 566666653 33 33333 3222
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCC----CeEEEEecCCCC
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 431 (461)
+.+++|+|||++|+..+.+ +.|++||+.+++
T Consensus 403 ----------~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 ----------MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ----------EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ----------eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2489999999988876443 569999998875
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=5.2e-21 Score=174.01 Aligned_cols=272 Identities=10% Similarity=0.104 Sum_probs=169.6
Q ss_pred cccccceEEEEEcCCCCEEEEeec---CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
..+...+..++|+|||+ |++++. ++.|++|++.++.. +.+..+..+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------~~~~~~~~~~-------- 85 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------HKLNTVVAPG-------- 85 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------------EEEEEEEEES--------
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------------EEeeeeecCC--------
Confidence 44567788999999999 555544 68999999966531 1222333343
Q ss_pred cccccceEEEEEeecCCCcEEEEEe-CCCeEEEEEcc-CCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..+..++|+ +++++|++++ .++.|.+|++. .+........... +..
T Consensus 86 ----~~p~~~a~s--pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------------------~~~- 133 (347)
T 3hfq_A 86 ----TPPAYVAVD--EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-------------------------GHG- 133 (347)
T ss_dssp ----CCCSEEEEE--TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------------------------CCC-
T ss_pred ----CCCEEEEEC--CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-------------------------CCC-
Confidence 558899999 6688888887 78999999995 3333322211100 000
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
.. ...+...+.+++|+|+++++++. .++.|.+|++....
T Consensus 134 ---------------------------------p~-------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 134 ---------------------------------PR-------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ---------------------------------SS-------TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred ---------------------------------CC-------ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 00 01233567889999999966666 68999999998333
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeE-EEEecCCeEEEEECCC--cccccccccccccccCCCcccccccccc
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
........ .. .....+..++|+|+| +++ +++..++.|.+|++.. +... .+..+...... + ....
T Consensus 174 ~~~~~~~~---~~-~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~-----~-~~~~ 240 (347)
T 3hfq_A 174 QLSEQSVL---TM-EAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD-----Y-TAHN 240 (347)
T ss_dssp CEEEEEEE---EC-CTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT-----C-CSCC
T ss_pred cEEEeeeE---Ec-CCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC-----C-CCCC
Confidence 32221100 01 123357789999999 744 4566789999999874 3321 01111111000 0 0013
Q ss_pred ceeEEEEccCCCEEEEe-c-CCeEEEEEccCCC--CCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 343 SISDIKFARNGRHILSR-D-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~-~-d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
.+..++|+|||++|+++ . ++.|.+|++...+ ..+..+..+...+ ..++|+|||++|++++.
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEET
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEc
Confidence 58899999999988653 3 5999999997322 2333333333222 38999999998887765
Q ss_pred -CCeEEEEec--CCCCcc
Q 012535 419 -SNLFRVFGC--SEGSAE 433 (461)
Q Consensus 419 -dg~i~iw~~--~~~~~~ 433 (461)
++.|.+|++ .+++..
T Consensus 306 ~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 306 NTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTTEEEEEEECTTTCCEE
T ss_pred CCCcEEEEEEeCCCCeEE
Confidence 589999955 455443
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=1.5e-21 Score=196.20 Aligned_cols=293 Identities=7% Similarity=0.035 Sum_probs=190.4
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCC---CCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDT---RDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
.|.+++|||||++|++++. +.|++||+.++ .. ..+..|. .
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~------------------------~~l~~~~------------~ 152 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV------------------------RQLTHGE------------G 152 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC------------------------CBCCCSS------------S
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE------------------------EEcccCC------------c
Confidence 4889999999999999986 89999999876 32 2345555 5
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccc-cccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG-SHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.+..++|+ +||++|+.++ ++.|.+||+.+++...+..........-....+.. .......++|+|||+.+
T Consensus 153 ~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l------ 223 (741)
T 2ecf_A 153 FATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI------ 223 (741)
T ss_dssp CEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE------
T ss_pred ccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE------
Confidence 69999999 6788888887 46899999998876554332211000000000000 00001278999999986
Q ss_pred CCCCccccccCCC---------------------------------cEEeeeeecc-cCccccceeeEeee-ccccccee
Q 012535 193 ASNDSSFPPGGVS---------------------------------SLRLPVVVTS-QETNLVAGCRRIYA-HAHDYHIN 237 (461)
Q Consensus 193 ~~~~~~~~~~~~~---------------------------------~i~i~~~~~~-~~~~~~~~~~~~~~-~~~~~~v~ 237 (461)
+.++.++ .|.+|| +.. .+ ...... ..|...+.
T Consensus 224 ------~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d-~~~~~~------~~~~~~~~~~~~~~~ 290 (741)
T 2ecf_A 224 ------AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS-PAEQAQ------TQWIDLGKEQDIYLA 290 (741)
T ss_dssp ------EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC-SSTTCC------CEEECCCSCSSEEEE
T ss_pred ------EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE-CCCCCc------eEEecCCCCcceEEE
Confidence 4443332 566667 322 11 111111 24778899
Q ss_pred eEEeCCCCCEEEEe-C-----CCeEEEEEccCCCCceeeeccCCCCCCCCC-c---ceEEEEEeCCCCCeEEEEecCCeE
Q 012535 238 SISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLT-E---VITSAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 238 ~i~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~---~v~~v~~~p~~~~~l~~~~~dg~i 307 (461)
.++| |+|+.|+.+ . +..|.+||+.+++.. .+. ..+. . .+..++|+|+| +++++++.||.+
T Consensus 291 ~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~-------~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~ 360 (741)
T 2ecf_A 291 RVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLA-------HETSPTWVPLHNSLRFLDDG-SILWSSERTGFQ 360 (741)
T ss_dssp EEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEE-------EEECSSCCCCCSCCEECTTS-CEEEEECTTSSC
T ss_pred EEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEE-------EcCCCCcCCcCCceEECCCC-eEEEEecCCCcc
Confidence 9999 999998864 2 578999999865432 221 1122 1 45689999999 789999999988
Q ss_pred EEEECCCcccccccccccccccCCCccccccccccceeEE-EEccCCCEEEE-ecC-C--eEEEEEccCCCCCeeEEeec
Q 012535 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI-KFARNGRHILS-RDY-M--TLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~s~~g~~l~s-~~d-~--~i~vwd~~~~~~~~~~~~~~ 382 (461)
+||.+..... ...+..+ ...+..+ .|+|+|+.|+. +++ + .++||++...+.....+..
T Consensus 361 ~l~~~~~~~~----~~~l~~~------------~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 361 HLYRIDSKGK----AAALTHG------------NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp EEEEECSSSC----EEESCCS------------SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred EEEEEcCCCC----eeeeeec------------ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 8887652211 1222222 2567777 59999998765 443 4 8999999754555555554
Q ss_pred cCccccccccccCCCccceeeEEEecCCCEEEEecCC----CeEEEEecCCC
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEG 430 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 430 (461)
... +..++|+|||++|+....+ +.+++|+...+
T Consensus 424 ~~~---------------~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 424 APG---------------MHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCS---------------EEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCC---------------ceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 222 2489999999988865443 57899988644
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.3e-21 Score=190.80 Aligned_cols=270 Identities=13% Similarity=0.076 Sum_probs=180.7
Q ss_pred cccceEEEEEcCCCCEEEEeec-CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
+..+|++++|+|||++||+++. ||+++||++.+++. ..+..|..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~~----------- 64 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREPI----------- 64 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSCC-----------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeecccc-----------
Confidence 4567999999999999999887 99999999865531 12333320
Q ss_pred cceEEEEEeecCCCcEEEEEeC---CCeEEEEEccC---CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..+..++|+ +| +.+++++. +...++|.+.. +......... ... ..+|+|+|+.+
T Consensus 65 ~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~----------~~~-------~~~~s~dg~~~ 124 (582)
T 3o4h_A 65 NSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK----------PMR-------ILSGVDTGEAV 124 (582)
T ss_dssp SEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC----------SBE-------EEEEEECSSCE
T ss_pred cccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC----------Cce-------eeeeCCCCCeE
Confidence 358999999 44 56666664 55667766543 2212111110 111 34889998764
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CC----CeEEEEEc
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNL 261 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----~~i~iwd~ 261 (461)
+++.+.++.+.+|| +... +..+.. ..+ . .+++|+|||+.|+++ .+ +.|++||+
T Consensus 125 -----------~~~s~~~~~~~l~d-~~~g------~~~~l~-~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 125 -----------VFTGATEDRVALYA-LDGG------GLRELA-RLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp -----------EEEEECSSCEEEEE-EETT------EEEEEE-EES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred -----------EEEecCCCCceEEE-ccCC------cEEEee-cCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence 24455555666999 4322 122221 222 2 789999999999976 44 78999998
Q ss_pred cCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC--eEEEEECCCcccccccccccccccCCCccccccc
Q 012535 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
.+++.. .+..+...+..++|+||| +.|+++..++ .|++||+.+++. . .+..+.
T Consensus 183 ~~g~~~---------~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~----~-~~~~~~---------- 237 (582)
T 3o4h_A 183 SSGGLR---------VFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV----E-DLELPS---------- 237 (582)
T ss_dssp TTCCCE---------EECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE----E-ECCCSC----------
T ss_pred CCCCce---------EeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE----E-EccCCC----------
Confidence 865432 245677888999999999 8899888888 899999988764 1 222222
Q ss_pred cccceeEEE--------EccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 340 IIASISDIK--------FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 340 h~~~v~~l~--------~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
..+..+. |+|||.++++++ ++.+++|++ ++... .+... +.+++|+ ++
T Consensus 238 --~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~---g~~~~---~~~~~---------------v~~~~~s-dg 293 (582)
T 3o4h_A 238 --KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID---GERVE---APQGN---------------HGRVVLW-RG 293 (582)
T ss_dssp --SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET---TEEEC---CCSSE---------------EEEEEEE-TT
T ss_pred --cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE---CCeec---cCCCc---------------eEEEEec-CC
Confidence 3344444 999998777776 699999998 33322 12222 2488999 99
Q ss_pred CEEEEecCCC---eEEEEecCC
Q 012535 411 GRVATGSYSN---LFRVFGCSE 429 (461)
Q Consensus 411 ~~l~s~~~dg---~i~iw~~~~ 429 (461)
+++++++.+. .+++|+...
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 9999888774 477777653
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=4.3e-20 Score=166.80 Aligned_cols=256 Identities=8% Similarity=0.042 Sum_probs=164.8
Q ss_pred cccceEEEEEcCCCCEEEEeec-CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
+...+ +++|+|+|++|++++. ++.|.+||..+++. ....+..+.
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------~~~~~~~~~------------ 83 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------KVVAIQEGQ------------ 83 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------EEEEEEECS------------
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------eEEecccCC------------
Confidence 34556 9999999997776665 88999999987652 022333333
Q ss_pred cceEEEEEeecCCCcEEEEEeCCC---eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
.+..+++|+ +++++++++..++ .|.+||+.+++.......... +. .++|+|+|+.+
T Consensus 84 ~~~~~~~~s--~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---------~~-------~~~~spdg~~l--- 142 (331)
T 3u4y_A 84 SSMADVDIT--PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD---------AV-------GIAISPNGNGL--- 142 (331)
T ss_dssp SCCCCEEEC--TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT---------EE-------EEEECTTSSCE---
T ss_pred CCccceEEC--CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC---------cc-------ceEECCCCCEE---
Confidence 334459998 5677888555553 999999998887665443211 12 78999999875
Q ss_pred ccCCCCCccccccCCCc-EEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE-e-CCCeEEEEEccCCCC
Q 012535 190 FGCASNDSSFPPGGVSS-LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQ 266 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~ 266 (461)
+++...++. +.+|+ +.......... ... ......+..++|+|++++++. + .++.|.+||+.+.+.
T Consensus 143 --------~~~~~~~~~~i~~~~-~~~~g~~~~~~-~~~--~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 143 --------ILIDRSSANTVRRFK-IDADGVLFDTG-QEF--ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp --------EEEEETTTTEEEEEE-ECTTCCEEEEE-EEE--ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred --------EEEecCCCceEEEEE-ECCCCcEeecC-Ccc--ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 345556678 99999 54322111111 111 133455789999999996655 4 689999999986655
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE-EecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
...+. .+. ....+..++|+|++ +++++ ...++.|.+||+.+++... +..+...-.. .........
T Consensus 211 ~~~~~-----~~~-~~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~ 276 (331)
T 3u4y_A 211 ITLLN-----AVG-TNNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSF--VKSFGHGLLI-----DPRPLFGAN 276 (331)
T ss_dssp CEEEE-----EEE-CSSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEE--EEEEECCCCC-----CCGGGTTCC
T ss_pred cceee-----ecc-CCCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceee--eccccccccc-----CCCCccccc
Confidence 11110 122 33567899999999 75554 4457889999998876411 1111111000 000012236
Q ss_pred EEEEccCCCEEEEe-cC-CeEEEEEccC
Q 012535 346 DIKFARNGRHILSR-DY-MTLKLWDINM 371 (461)
Q Consensus 346 ~l~~s~~g~~l~s~-~d-~~i~vwd~~~ 371 (461)
.++|+|||++|+++ .+ +.|.+||+..
T Consensus 277 ~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 277 QMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred ceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 68999999988764 44 8999999974
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=6.7e-21 Score=197.87 Aligned_cols=285 Identities=10% Similarity=0.052 Sum_probs=200.6
Q ss_pred cccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..|...+.+++|+++ .++++++.||.++||.+..... ....+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------------~~~~l~~~~----------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------------DLRKHTSFT----------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------------SCEECCCCC-----------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------------cceEecCCC-----------
Confidence 468899999999998 6777888899999998764221 112333443
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCcc---CCCCCccccccccCcceee-cCCCccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA---AGNGPIFGSHVSAIPKSYM-ANGGCGE 187 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~-~~g~~~~ 187 (461)
.+..++|+| +|+.++.+ .++.|.+|++...++. ........... ...+.+. .++|+ |+|+.+
T Consensus 246 --~~~~~~~Sp--DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~-------~~~~S~pdG~~l- 311 (1045)
T 1k32_A 246 --DYYPRHLNT--DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKF-------AEDFSPLDGDLI- 311 (1045)
T ss_dssp --SSCEEEEEE--SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGG-------EEEEEECGGGCE-
T ss_pred --CcceeeEcC--CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccc-------eeeecCCCCCEE-
Confidence 256779994 57778777 5899999999554433 22111000000 0011122 78999 999985
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeeccccc-ceeeEEeCCCCCEEEEe-CCCeEE-EEEccCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEIS 264 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~-~d~~i~-iwd~~~~ 264 (461)
+.++ ++.+.+|+ +.... .. . +..|.. .+..++|+ +++.|+.+ .++.+. +|++.+.
T Consensus 312 -----------a~~~-~~~i~~~~-~~~~~------~~-~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 312 -----------AFVS-RGQAFIQD-VSGTY------VL-K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp -----------EEEE-TTEEEEEC-TTSSB------EE-E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred -----------EEEE-cCEEEEEc-CCCCc------eE-E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 5544 78899888 33211 11 1 245666 88999999 99999988 777888 8898754
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
. .. .+.++...+..++|+|+| +.|++++.++.|++||+.+++. ...+..+ ...+
T Consensus 370 ~-~~--------~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~----~~~~~~~------------~~~v 423 (1045)
T 1k32_A 370 K-AE--------KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP----TVIERSR------------EAMI 423 (1045)
T ss_dssp C-EE--------ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEECS------------SSCC
T ss_pred C-ce--------EecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCce----EEeccCC------------CCCc
Confidence 3 22 233577889999999999 9999999999999999988764 2222233 3678
Q ss_pred eEEEEccCCCEEEEec-C----------CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 345 SDIKFARNGRHILSRD-Y----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
.+++|+|||++|++++ + +.|++||+.. ++ +..+..|.... ..++|+|||++|
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l 486 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNL 486 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEE
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEE
Confidence 9999999999998754 2 4899999985 44 55566555443 478999999999
Q ss_pred EEecCCCeEEEEecCC
Q 012535 414 ATGSYSNLFRVFGCSE 429 (461)
Q Consensus 414 ~s~~~dg~i~iw~~~~ 429 (461)
++++.++...+|+...
T Consensus 487 ~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 487 YYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEEESCCCCCEECSSS
T ss_pred EEEecccCCcCcchhc
Confidence 9999988888888653
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=2.6e-19 Score=166.92 Aligned_cols=332 Identities=8% Similarity=0.012 Sum_probs=184.8
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
+...++.+++++++.++++|+.++ ++||+........... . ......... ....+.+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~----------~~~~~~~~~-------~~~~~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---D----------DPNKIVDKV-------QGLLVPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---C----------CTTCEEECC-------CCEEECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---c----------CcccccccC-------ccccccCCC
Confidence 345689999999999999999887 9999865321100000 0 000000000 001112226
Q ss_pred ceEEEEEeecCCCcEEE----EEeCCCeEEEEEccCC-----ce---eE-EeeeecCCCccCCCCCccccccccCcceee
Q 012535 114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEK-----KV---KK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~----~~~~d~~i~vw~~~~~-----~~---~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (461)
.|++++|+ +++.+|+ +++.|++|++||+.++ +. .. ...... +.+.+. +++|+
T Consensus 94 ~v~~l~~s--pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~-------~v~~~ 158 (434)
T 2oit_A 94 PIHHLALS--CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD------AGGMVI-------DMKWN 158 (434)
T ss_dssp CEEEEEEC--TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS------GGGSEE-------EEEEC
T ss_pred cccEEEEc--CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC------CCCceE-------EEEEC
Confidence 79999999 5677888 6788999999999764 11 11 111110 122344 78999
Q ss_pred cC-CCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEE
Q 012535 181 AN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL 258 (461)
Q Consensus 181 ~~-g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~i 258 (461)
|+ +.. +++++.||.|++|| +... ..... ..+|...|.+++|+|+|++|++| .||.|++
T Consensus 159 p~~~~~------------las~s~Dg~v~iwD-~~~~------~~~~~-~~~~~~~v~~v~wspdg~~lasgs~dg~v~i 218 (434)
T 2oit_A 159 PTVPSM------------VAVCLADGSIAVLQ-VTET------VKVCA-TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQ 218 (434)
T ss_dssp SSCTTE------------EEEEETTSCEEEEE-ESSS------EEEEE-EECGGGCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCCCCE------------EEEEECCCeEEEEE-cCCC------cceee-ccCCCCceeEEEEcCCCCEEEEEcCCCcEEE
Confidence 98 555 48999999999999 5332 11222 25688899999999999999999 8999999
Q ss_pred EEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE-EecCC------eEEEEECCCcccccccccccccccCC
Q 012535 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
||.+ ..... .+.........|...+.+++|++++ .++++ +..|| .+++||++...... ...+.....+
T Consensus 219 wd~~-~~~~~-~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~ 293 (434)
T 2oit_A 219 YLPT-LQEKK-VIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEP 293 (434)
T ss_dssp ECTT-CCEEE-EECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCS
T ss_pred EccC-Ccccc-cccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccC
Confidence 9998 33222 1111110111345589999999987 55543 33443 38999998653210 0111111100
Q ss_pred CccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe--
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-- 407 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-- 407 (461)
...+.+...+-..+.+-++.+++++++ .+.|.|......+...............++--...+..++ ..+++.
T Consensus 294 --~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~p-iG~~~d~~ 370 (434)
T 2oit_A 294 --CYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLP-MGVVVDYT 370 (434)
T ss_dssp --SCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCBCTTSCBCCE-EEEEEECC
T ss_pred --CCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccccCCCCCCCcee-eEEEEEcc
Confidence 000001112222344447777777654 3667777654322222222222211111111001111111 123321
Q ss_pred c-------------CCCEEEEecCCCeEEEEecCC
Q 012535 408 G-------------DGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 408 ~-------------~~~~l~s~~~dg~i~iw~~~~ 429 (461)
. --..|.+-+.||.+..|.+-+
T Consensus 371 ~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 371 NQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred CCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1 124677888999999999876
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=4.4e-20 Score=167.96 Aligned_cols=295 Identities=8% Similarity=0.029 Sum_probs=178.7
Q ss_pred EEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
.++++++++++++++.++.|.+||..+++. ...+..+.. ..+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~-----------~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK-----------FGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC-----------CSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCCC-----------CCCceeE
Confidence 457888999999999999999999987642 222222210 1377899
Q ss_pred EeecCCCcEEE-EEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCcc
Q 012535 120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (461)
Q Consensus 120 ~~p~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (461)
|+ +++++++ ++..++.|.+||+.+++..........+. .....+..++|+|+|+.+
T Consensus 50 ~s--~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l------------ 106 (349)
T 1jmx_B 50 MA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG---------EVGRSMYSFAISPDGKEV------------ 106 (349)
T ss_dssp EC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT---------EEEECSSCEEECTTSSEE------------
T ss_pred EC--CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc---------cccccccceEECCCCCEE------------
Confidence 98 5566555 45678999999999887665544321000 000112278999999985
Q ss_pred ccccCC------------CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCC
Q 012535 199 FPPGGV------------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (461)
Q Consensus 199 ~~~~~~------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~ 266 (461)
+++..+ +.|.+|| +..... ......+ .+...+.+++|+|+++ ++++. +.|.+||+.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d-~~~~~~---~~~~~~~--~~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFS-TADGLE---AKPVRTF--PMPRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKY 178 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEE-GGGGGG---BCCSEEE--ECCSSCCCEEECTTSC-EEEES-SSEEEECTTTCCE
T ss_pred EEEcccccccccccccCCCeEEEEE-CCCccc---cceeeec--cCCCcccceeECCCCc-EEEcc-CcEEEEeCCCCce
Confidence 666544 8999999 543211 1111221 2234688999999999 44442 2399999986553
Q ss_pred ceeeeccCCCCCC-------------CCC----cceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc
Q 012535 267 SFNIVDVKPANME-------------DLT----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 267 ~~~~~~~~~~~~~-------------~~~----~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
... +........ ... .....+++++++............+..+|..++... ...+..
T Consensus 179 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 252 (349)
T 1jmx_B 179 TVA-LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFAD-- 252 (349)
T ss_dssp EEE-ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE---EEEEEE--
T ss_pred ecc-ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE---eccccc--
Confidence 322 111100000 000 033456666654111111111112223555554321 111111
Q ss_pred CCCccccccccccceeEEEEcc-CCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 330 APGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
+...+..++|+| +|++|+++ ++.|.+||+.+ ++.+..+...... ..++|+|
T Consensus 253 ----------~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~ 304 (349)
T 1jmx_B 253 ----------LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTY----------------YCVAFDK 304 (349)
T ss_dssp ----------CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CEEEECS
T ss_pred ----------CCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCCc----------------cceEECC
Confidence 114688999999 99999988 88999999986 6666666543322 3899999
Q ss_pred CCCEEEEecCCCeEEEEecCCCCcc
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
++++|++++.++.|++||+++++..
T Consensus 305 dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 305 KGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCCEEEEecCCCeEEEEecccccee
Confidence 9999888888999999999988654
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.3e-19 Score=163.44 Aligned_cols=246 Identities=8% Similarity=0.018 Sum_probs=174.6
Q ss_pred cceEEEEEeecCCCcEEEEEeC-------CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 113 EKINKIRWCQSANSALYLLSTN-------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~-------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
..+..++|+ ++++++++++. ++.|.+||..+++.......... + ..++++|+|+.
T Consensus 41 ~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~-------~~~~~s~dg~~ 102 (353)
T 3vgz_A 41 KGAYEMAYS--QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK---------P-------FGATINNTTQT 102 (353)
T ss_dssp SSEEEEEEE--TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC---------C-------CSEEEETTTTE
T ss_pred cCccceEEC--CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC---------c-------ceEEECCCCCE
Confidence 558899999 56767777763 67899999999887666554221 1 17899999996
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccc--------cceeeEEeCCCCCEEEEe---CCC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD--------YHINSISNNSDGETFISA---DDL 254 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~l~~~---~d~ 254 (461)
+ +++...++.|.+|| ....+ ....+..+.. ..+.+++|+|+++.++++ .++
T Consensus 103 l-----------~v~~~~~~~v~~~d-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 103 L-----------WFGNTVNSAVTAID-AKTGE------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp E-----------EEEETTTTEEEEEE-TTTCC------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred E-----------EEEecCCCEEEEEe-CCCCe------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 4 35667789999999 43221 1222211111 126889999999977765 378
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
.|.+||..+.+.... +..+...+.+++|+|++ +.+++++.++.|.+||+.+++.. ..+....
T Consensus 165 ~i~~~d~~~~~~~~~--------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~----- 226 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTA--------IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD----- 226 (353)
T ss_dssp EEEEEETTTTEEEEE--------ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC-----
T ss_pred eEEEEcCCCCceEEE--------ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC-----
Confidence 999999986544322 22234457889999999 88999999999999999988752 2222211
Q ss_pred ccccccccceeEEEEccCCCEEEEec-C-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
.++...+.+++|+|+|++|++++ + +.|.+||+.+ ++.+..+..... ..++|+|++++
T Consensus 227 ---~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~ 285 (353)
T 3vgz_A 227 ---DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNE 285 (353)
T ss_dssp ---SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTE
T ss_pred ---CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCE
Confidence 01124678899999999887754 3 8999999986 777777764332 27999999996
Q ss_pred EE-EecCCCeEEEEecCCCCcc
Q 012535 413 VA-TGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 413 l~-s~~~dg~i~iw~~~~~~~~ 433 (461)
++ +...++.|.+||+.+++..
T Consensus 286 l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 286 AYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp EEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEECCCCeEEEEECCCCeEE
Confidence 55 4557999999999988654
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.5e-20 Score=166.74 Aligned_cols=236 Identities=10% Similarity=0.070 Sum_probs=164.4
Q ss_pred ccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCC-CCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD-TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...|...|.+++|+|+|++|++++ ++.|++||+.+ ++.. .....|..
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----------------------~~~~~~~~-------- 84 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----------------------KVDTGFAT-------- 84 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----------------------ECCCTTCC--------
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----------------------Eecccccc--------
Confidence 456888999999999999999987 78999999987 5421 22233321
Q ss_pred ccccceEEEEEeecCCCcEEEEEe--CCCeEEEEEc--cCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 110 EIEEKINKIRWCQSANSALYLLST--NDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
..+.+++|+ ++++++++++ .++..+||.+ .++....+... ..+. .++|+|+++.
T Consensus 85 ---~~~~~~~~s--pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~-------~~~~spdg~~ 142 (297)
T 2ojh_A 85 ---ICNNDHGIS--PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN----------LPSY-------WHGWSPDGKS 142 (297)
T ss_dssp ---CBCSCCEEC--TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS----------SSEE-------EEEECTTSSE
T ss_pred ---ccccceEEC--CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC----------CCcc-------ceEECCCCCE
Confidence 458899999 5688999988 4456666655 44432221111 1122 6789999997
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~ 263 (461)
+ ++++..++.+++|+ +..... . ... +..+...+.+++|+|+++.|+.+ .++.+.+|+++.
T Consensus 143 l-----------~~~~~~~~~~~l~~-~~~~~~----~-~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 143 F-----------TYCGIRDQVFDIYS-MDIDSG----V-ETR-LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp E-----------EEEEEETTEEEEEE-EETTTC----C-EEE-CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred E-----------EEEECCCCceEEEE-EECCCC----c-ceE-cccCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 5 34778889999998 432211 1 112 25667789999999999988765 489999999873
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-----------CeEEEEECCCcccccccccccccccCCC
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----------GSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
...... .+..+...+.+++|+|++ ++|++++.+ +.|.+||+.+++... +..+..
T Consensus 205 ~~~~~~-------~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~----- 269 (297)
T 2ojh_A 205 DGSSVE-------RITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET--LFDLFG----- 269 (297)
T ss_dssp TSSCEE-------ECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE--EEEEEE-----
T ss_pred CCCCcE-------EEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCcee--eeccCC-----
Confidence 333322 345567789999999999 888887765 569999998865311 122222
Q ss_pred ccccccccccceeEEEEccCCCEEEEec
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRD 360 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~ 360 (461)
|...+..++|+|+|++|++++
T Consensus 270 -------~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 270 -------GQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp -------STTTSCSCCBCTTSSEEEEEE
T ss_pred -------CCcccccceECCCCCEEEEEE
Confidence 236788999999999998864
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=4.5e-20 Score=184.28 Aligned_cols=297 Identities=10% Similarity=0.100 Sum_probs=182.2
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEEEcCCCCC--CCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRD--NGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
+..+.|. |+.+++++.++ | +||+.+++. . .... ..... ...+.+-.. ...+. ..|
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~-~l~~-~~~~~--~~l~~~~~~---~~~~~------------~~v 84 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT-TRFS-AADLN--ALMPEGCKF---QTTDA------------FPS 84 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C-EEEE-HHHHH--TTC--------------------------CCC
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE-Eeec-hhHhh--hhccchhcc---ccccc------------cCc
Confidence 5567888 66777777787 8 999988764 2 0000 00000 000000000 00011 349
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
.+++|+| | ..++.+ .++.|++||+.+++........ +.+. .++|+|+|+.+
T Consensus 85 ~~~~~sp--d-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~---------~~~~-------~~~~SpdG~~l--------- 135 (706)
T 2z3z_A 85 FRTLDAG--R-GLVVLF-TQGGLVGFDMLARKVTYLFDTN---------EETA-------SLDFSPVGDRV--------- 135 (706)
T ss_dssp EEEEETT--T-TEEEEE-ETTEEEEEETTTTEEEEEECCT---------TCCT-------TCEECTTSSEE---------
T ss_pred eeEEECC--C-CeEEEE-ECCEEEEEECCCCceEEccCCc---------cccc-------CCcCCCCCCEE---------
Confidence 9999994 4 455555 4599999999988765543321 1222 67999999985
Q ss_pred CccccccCCCcEEeeeeecc-----cCccccceeeEeeeccccc--------------ceeeEEeCCCCCEEEEeC----
Q 012535 196 DSSFPPGGVSSLRLPVVVTS-----QETNLVAGCRRIYAHAHDY--------------HINSISNNSDGETFISAD---- 252 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~--------------~v~~i~~~~~~~~l~~~~---- 252 (461)
+. ..++.|.+|+ +.. .+. .+.. ..+.. .+.+++|+|+|+.|+++.
T Consensus 136 ---a~-~~~~~i~v~~-~~~~~~~~g~~------~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~ 203 (706)
T 2z3z_A 136 ---AY-VRNHNLYIAR-GGKLGEGMSRA------IAVT-IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQS 203 (706)
T ss_dssp ---EE-EETTEEEEEE-CBCTTSCCCCC------EESC-SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECT
T ss_pred ---EE-EECCeEEEEe-cCcccccCCCc------EEec-cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCC
Confidence 55 4679999999 543 211 1111 12222 258899999999998862
Q ss_pred ------------------------------CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe
Q 012535 253 ------------------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (461)
Q Consensus 253 ------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 302 (461)
+..|.+||+.+++.. .+. ....+...+.+++|+|++ +.|++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~ 276 (706)
T 2z3z_A 204 MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-YLQ-----TGEPKEKFLTNLSWSPDE-NILYVAE 276 (706)
T ss_dssp TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-ECC-----CCSCTTCEEEEEEECTTS-SEEEEEE
T ss_pred CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-eec-----cCCCCceeEeeEEEECCC-CEEEEEE
Confidence 257999999855422 110 112466789999999999 8888888
Q ss_pred cCC-----eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc--CCCEEEEec-CCeEEEEEccCCCC
Q 012535 303 SKG-----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSG 374 (461)
Q Consensus 303 ~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~g~~l~s~~-d~~i~vwd~~~~~~ 374 (461)
.++ .|++||+.+++.. ..+...... .....+..++|+| ||++|++++ ++.++||+++..+.
T Consensus 277 ~~~~~~~~~v~~~d~~~g~~~----~~~~~~~~~-------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 277 VNRAQNECKVNAYDAETGRFV----RTLFVETDK-------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp ECTTSCEEEEEEEETTTCCEE----EEEEEEECS-------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred eCCCCCeeEEEEEECCCCcee----eEEEEccCC-------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 776 9999999987321 221111100 0001246789999 999998876 58888998874466
Q ss_pred CeeEEeeccCccccccccccCCCccceee-EEEecCCCEEEEec-CCC----eEEEEecCCCC
Q 012535 375 PVATFQVHEHLRPKLCDLYENDSIFDKFE-CCLSGDGGRVATGS-YSN----LFRVFGCSEGS 431 (461)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~-~dg----~i~iw~~~~~~ 431 (461)
.+..+..+...+ .. ++|+||++.|+.++ .++ .|+.||+.+++
T Consensus 346 ~~~~l~~~~~~v---------------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 346 LIRQVTKGEWEV---------------TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEEECCCSSSCE---------------EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEecCCCCeEE---------------EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 666676655433 24 79999998776554 444 77778877665
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=1.9e-18 Score=158.03 Aligned_cols=261 Identities=10% Similarity=0.064 Sum_probs=157.9
Q ss_pred cceEEEEEeecCCCcEEEEEeCC----CeEEEEEccC--CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 113 EKINKIRWCQSANSALYLLSTND----KTIKLWKVQE--KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d----~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..+..++|+ +++++|++++.+ +.|.+|++.. ++...+....... ..+. .+++ +++.+
T Consensus 50 ~~p~~l~~s--pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~------~~p~-------~~~~--dg~~l 112 (361)
T 3scy_A 50 ANPSYLIPS--ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG------ADPC-------YLTT--NGKNI 112 (361)
T ss_dssp SCCCSEEEC--TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS------SCEE-------EEEE--CSSEE
T ss_pred CCCceEEEC--CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC------CCcE-------EEEE--CCCEE
Confidence 447889999 568889988875 8999999875 5544443332110 0111 3444 67764
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEee-------ecccccceeeEEeCCCCCEEEEe--CCCeEE
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-------AHAHDYHINSISNNSDGETFISA--DDLRIN 257 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~ 257 (461)
+++...++.+.+|+ +............... ...+...+.+++|+|++++++++ .++.|.
T Consensus 113 -----------~~~~~~~~~v~~~~-~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 113 -----------VTANYSGGSITVFP-IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp -----------EEEETTTTEEEEEE-BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred -----------EEEECCCCEEEEEE-eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 34445788999999 5332111110000000 01123345789999999976655 589999
Q ss_pred EEEccCCCC----c-eeee-ccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCCeEEEEECCCcccccccccccccccC
Q 012535 258 LWNLEISNQ----S-FNIV-DVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 258 iwd~~~~~~----~-~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
+|++..... . +... ... .........+..++|+|++ +++++++ .++.|.+||+.++.... +..+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~~-- 254 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPE-AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAAD-- 254 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEE-EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEESC--
T ss_pred EEEEcCCCCcccccceeeccccc-ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEecC--
Confidence 999875442 1 1000 000 0011234557899999999 7776666 68999999998664311 1111111
Q ss_pred CCccccccccccceeEEEEccCCCEEEEec---CCeEEEEEccCC-CC--CeeEEeeccCccccccccccCCCccceeeE
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSRD---YMTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~---d~~i~vwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (461)
..+......++|+|||++|++++ ++.|.+|++... ++ .+..+.. ...+ ..+
T Consensus 255 -------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~---------------~~~ 311 (361)
T 3scy_A 255 -------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP---------------RNF 311 (361)
T ss_dssp -------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC---------------CEE
T ss_pred -------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC---------------ceE
Confidence 11113468999999999987643 379999999631 33 2222222 1111 389
Q ss_pred EEecCCCEEEEec-CCCeEEEEecC--CCC
Q 012535 405 CLSGDGGRVATGS-YSNLFRVFGCS--EGS 431 (461)
Q Consensus 405 ~~s~~~~~l~s~~-~dg~i~iw~~~--~~~ 431 (461)
+|+|||++|++++ .++.|.+|+++ +++
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 9999999888776 67999997654 454
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=1.3e-19 Score=181.62 Aligned_cols=320 Identities=9% Similarity=0.039 Sum_probs=179.5
Q ss_pred ceEEEEEcCCCCEEEEeecC---------CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcc
Q 012535 37 IISAIEFDKSGDHLATGDRG---------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (461)
.|.+++|||||++||+++.+ +.|.+||+.+++.. .+....+|.
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~------- 113 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---------------------SLDPPEVSN------- 113 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---------------------ECCCTTCCS-------
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---------------------eccCCcccc-------
Confidence 49999999999999999764 78889999876521 122233444
Q ss_pred ccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccC-CCCCcccc--ccccCcceeecCCC
Q 012535 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA-GNGPIFGS--HVSAIPKSYMANGG 184 (461)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~g~ 184 (461)
..+..++|+ +||+.|+.++. +.|++|++.+++...+........... ....+... .....+++|+|||+
T Consensus 114 -----~~~~~~~~S--PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~ 185 (723)
T 1xfd_A 114 -----AKLQYAGWG--PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT 185 (723)
T ss_dssp -----CCCSBCCBC--SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred -----ccccccEEC--CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence 458889999 56888988876 799999999887665544321100000 00000000 00001679999999
Q ss_pred cccccccCCCCCcc------------------c--cc--cCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeC
Q 012535 185 CGERNFGCASNDSS------------------F--PP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242 (461)
Q Consensus 185 ~~~~~~~~~~~~~~------------------~--~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 242 (461)
.+...........+ + .| ..+..|.+|| +.............. ...+...+..++|+
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d-~~~~~~~~~l~~~~~-~~~~~~~~~~~~~S 263 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG-LNGPTHDLEMMPPDD-PRMREYYITMVKWA 263 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE-SSSSCCCEECCCCCC-GGGSSEEEEEEEES
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE-CCCCceeEEeeCCcc-CCCccceeEEEEEe
Confidence 86332211000000 0 00 1123788888 433221000000000 01235678899999
Q ss_pred CCCCEEEEe-C----CCeEEEEEccCCCCceeeeccCCCCCCCCCcce----EEEEEeCCCCCeEEE--EecCC------
Q 012535 243 SDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVI----TSAEFHPTHCNMLAY--SSSKG------ 305 (461)
Q Consensus 243 ~~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~v~~~p~~~~~l~~--~~~dg------ 305 (461)
|+|+++++. . +..|.+||+.+++.. .+. ...+...+ ..++|+|+| +.|+. +..++
T Consensus 264 pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-~~~------~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 264 TSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKH------EDESEAWLHRQNEEPVFSKDG-RKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp SSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEE------EEECSSCCCCCCCCCEECTTS-CSEEEEEEECCSSSSCEE
T ss_pred CCCeEEEEEEcCCCCeEEEEEEeCCCCcce-EEE------EeccCCEEeccCCCceEcCCC-CeEEEEEecccCCCccee
Confidence 999988765 2 367999999865432 221 01122333 378999999 65554 45667
Q ss_pred eEEEEE-CCCcccccccccccccccCCCccccccccccceeE-EEEccCCCEEEE-ecC---CeEEEEEccCCCC-CeeE
Q 012535 306 SIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILS-RDY---MTLKLWDINMDSG-PVAT 378 (461)
Q Consensus 306 ~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~g~~l~s-~~d---~~i~vwd~~~~~~-~~~~ 378 (461)
.|.+|| ...+... ....+.... ..+.. ++|+|||++|+. +.+ +.++||++...+. ....
T Consensus 336 ~l~~~d~~~~~~~~--~~~~l~~~~------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 401 (723)
T 1xfd_A 336 HITVSSSQPNSSND--NIQSITSGD------------WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC 401 (723)
T ss_dssp EEEEECSSCCSSSC--CCCBSCCSS------------SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred EEEEEeccCCCCcc--ceeEeecCC------------eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcce
Confidence 566777 3333200 011222111 23444 699999999875 443 7899999875332 2333
Q ss_pred Eee---ccCccccccccccCCCccceeeEEEecCCCEEEEecC-CC--eEEEEecCCCC
Q 012535 379 FQV---HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGS 431 (461)
Q Consensus 379 ~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iw~~~~~~ 431 (461)
+.. |...+ ..++|+|||++|+.... .+ ...+++..+++
T Consensus 402 l~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~ 445 (723)
T 1xfd_A 402 LSCDLVENCTY---------------FSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKK 445 (723)
T ss_dssp SSTTSSSSCCC---------------CEEEECTTSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred ecccccCCCCe---------------EEEEECCCCCEEEEEccCCCCCeEEEEECCCCC
Confidence 332 22222 38999999998876432 22 33445554443
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=2.1e-18 Score=157.67 Aligned_cols=268 Identities=10% Similarity=0.038 Sum_probs=163.0
Q ss_pred cccceEEEEEcCCCCEEEEeecC----CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
+...+..++|+|||++|++++.+ +.|.+|++..... ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 66778889999999999999876 7999999875311 111222222232
Q ss_pred ccccceEEEEEeecCCCcEEEEEe-CCCeEEEEEccCCc-eeEEeeeecCCCccCCCCCc--cccccccCcceeecCCCc
Q 012535 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPI--FGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~g~~ 185 (461)
.....+++ +++++++++ .++.|.+|++.... ............ .+.. ......+.+++|+|+|+.
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG----SGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC----CCSCTTTCSSCCEEEEEECTTSSE
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC----CCCCccccCCCcceEEEECCCCCE
Confidence 33566666 466777765 68999999997532 211111100000 0000 000011126899999997
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCc----c-ccce-eeEeeecccccceeeEEeCCCCCEEEEe--CCCeEE
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQET----N-LVAG-CRRIYAHAHDYHINSISNNSDGETFISA--DDLRIN 257 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~----~-~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~ 257 (461)
+ +++...++.|.+|+ +..... . .... ........+...+..++|+|++++++++ .++.|.
T Consensus 169 l-----------~~~~~~~~~v~v~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 169 L-----------LADDLGTDQIHKFN-INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp E-----------EEEETTTTEEEEEE-ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred E-----------EEEeCCCCEEEEEE-EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 5 35556688999998 543221 1 1100 0011123344567899999999977665 599999
Q ss_pred EEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec--CCeEEEEECC--CcccccccccccccccCCCc
Q 012535 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMR--QSALCDTHSKLFEEQEAPGT 333 (461)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~ 333 (461)
+|++.++. ...+..+ .....+...+..++|+|++ ++|+++.. ++.|.+|++. ++... .+..+.. .
T Consensus 237 v~~~~~g~-~~~~~~~--~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~--~~~~~~~-g---- 305 (361)
T 3scy_A 237 AFRYADGM-LDEIQTV--AADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLT--KVGYQLT-G---- 305 (361)
T ss_dssp EEEEETTE-EEEEEEE--ESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEE--EEEEEEC-S----
T ss_pred EEEecCCc-eEEeEEE--ecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEE--EeeEecC-C----
Confidence 99998432 2111111 1223344556899999999 77766655 4899999996 33321 1222222 1
Q ss_pred cccccccccceeEEEEccCCCEEEEec--CCeEEEEEccC
Q 012535 334 RSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM 371 (461)
Q Consensus 334 ~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~ 371 (461)
..+..++|+|||++|++++ ++.|.+|+++.
T Consensus 306 --------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 306 --------IHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp --------SCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred --------CCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 3578899999999998865 49999987653
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=3.6e-18 Score=156.24 Aligned_cols=259 Identities=8% Similarity=-0.016 Sum_probs=163.9
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEcc-CCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.+..++|+ +++++|++++.+ .|.+|++. +++......... .+.+. .++++|+|+.+.
T Consensus 41 ~~~~~a~s--pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-------~g~~~-------~~~~spdg~~l~----- 98 (365)
T 1jof_A 41 PISWMTFD--HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-------GGHPR-------ANDADTNTRAIF----- 98 (365)
T ss_dssp CCSEEEEC--TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-------CSSGG-------GGCTTSCCEEEE-----
T ss_pred CCcEEEEC--CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-------CCCCc-------cEEECCCCCEEE-----
Confidence 47889999 568889888888 99999997 776544333211 01122 678999998420
Q ss_pred CCCCcccccc-------------CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEE
Q 012535 193 ASNDSSFPPG-------------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRIN 257 (461)
Q Consensus 193 ~~~~~~~~~~-------------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~ 257 (461)
++++. .++.+.+|+ +.... ........+...+...+.+++|+|+|++++++ .++.|.
T Consensus 99 -----~~~~~~~~~~~~~~~~~~~~g~v~v~~-~~~~g--~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 99 -----LLAAKQPPYAVYANPFYKFAGYGNVFS-VSETG--KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLW 170 (365)
T ss_dssp -----EEECSSTTCCEEEEEESSSCCEEEEEE-ECTTC--CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred -----EEEecCCcceeccceeecCCceEEEEc-cCCCC--cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEE
Confidence 13442 688999999 53211 11111111111345678999999999988876 478999
Q ss_pred EEEcc-CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CCeEEEEECC--Cccccc--ccccccccccCC
Q 012535 258 LWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCD--THSKLFEEQEAP 331 (461)
Q Consensus 258 iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~--~~~~~~--~~~~~~~~~~~~ 331 (461)
+|++. +++.. .+..+ ....+...+..++|+|+| ++|++++. ++.|.+|++. +++... ..+..+...
T Consensus 171 ~~~~~~~g~~~-~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~--- 242 (365)
T 1jof_A 171 THRKLASGEVE-LVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG--- 242 (365)
T ss_dssp EEEECTTSCEE-EEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT---
T ss_pred EEEECCCCCEE-EeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC---
Confidence 99997 44321 11100 111235668999999999 77777664 7899999875 343210 001111110
Q ss_pred Ccccccccccc------ceeEEE-EccCCCEEEEec--CC-----eEEEEEccCCCCCeeE---EeeccCcccccccccc
Q 012535 332 GTRSFFTEIIA------SISDIK-FARNGRHILSRD--YM-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDLYE 394 (461)
Q Consensus 332 ~~~~~~~~h~~------~v~~l~-~s~~g~~l~s~~--d~-----~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~ 394 (461)
+.+|.. .+..++ |+|||++|++++ .+ .|.+|++...++.... +..+....
T Consensus 243 -----~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~-------- 309 (365)
T 1jof_A 243 -----IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG-------- 309 (365)
T ss_dssp -----CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT--------
T ss_pred -----cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc--------
Confidence 111222 588999 999999988754 23 8999999632443321 22222222
Q ss_pred CCCccceeeEEEec---CCCEEEEecC-CCeEEEEecCCC
Q 012535 395 NDSIFDKFECCLSG---DGGRVATGSY-SNLFRVFGCSEG 430 (461)
Q Consensus 395 ~~~~~~v~~~~~s~---~~~~l~s~~~-dg~i~iw~~~~~ 430 (461)
..++|+| ||++|++++. ++.|.+|+++..
T Consensus 310 -------~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 310 -------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -------TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -------ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2788999 8999998876 489999999865
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=184.24 Aligned_cols=292 Identities=8% Similarity=0.000 Sum_probs=177.7
Q ss_pred EEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
+++|+|||++++++ .|++|++||+.+++.. ..+.+|... ...+.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~~---------~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTMK---------SVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHHH---------TTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEcccccc---------ccceeeEE
Confidence 78999999666554 6999999999887521 222222200 01388999
Q ss_pred EeecCCCcEEEEEeC---------CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 120 ~~p~~~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
|| +||++|++++. ++.|++||+.+++........ ..+. .++|+|+|+.+
T Consensus 67 ~S--pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---------~~~~-------~~~~SPDG~~l---- 124 (719)
T 1z68_A 67 LS--PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---------RPIQ-------YLCWSPVGSKL---- 124 (719)
T ss_dssp EC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---------SSBC-------CEEECSSTTCE----
T ss_pred EC--CCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---------cccc-------cceECCCCCEE----
Confidence 99 67889998876 799999999988762101110 1122 67999999985
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCcccccee--eEeeecccccc---------eeeEEeCCCCCEEEEe-CC-C---
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGC--RRIYAHAHDYH---------INSISNNSDGETFISA-DD-L--- 254 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~~~~~~~~~---------v~~i~~~~~~~~l~~~-~d-~--- 254 (461)
+.+ .++.|++|+ +........... ......++... ..+++|+|||+.|+++ .| +
T Consensus 125 --------a~~-~~~~i~~~~-~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 125 --------AYV-YQNNIYLKQ-RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp --------EEE-ETTEEEEES-STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred --------EEE-ECCeEEEEe-CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 544 478999999 433221100000 00000122222 2589999999999987 33 2
Q ss_pred ------------------------------eEEEEEccCCCCc--eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe
Q 012535 255 ------------------------------RINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (461)
Q Consensus 255 ------------------------------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 302 (461)
.|++||+.+++.. ..+. .+..+.+|...+..++|+|++ +++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~~ 271 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQWL 271 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEEE
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEEe
Confidence 7889998754421 1110 011244578889999999997 7777754
Q ss_pred cC----CeEEEEE----CCCcccccccccccccccCCCcccccccccccee-----EEEEccCCCEEEE--ec-C--CeE
Q 012535 303 SK----GSIRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--RD-Y--MTL 364 (461)
Q Consensus 303 ~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~l~~s~~g~~l~s--~~-d--~~i 364 (461)
.. ..|.+|| +.+++. ...+... ..+|...+. .+.|+|||+.|+. +. + ..|
T Consensus 272 ~~~~~~~~l~~~d~~~~~~~g~~----~~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 272 KRVQNVSVLSICDFREDWQTWDC----PKTQEHI--------EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp ESSTTEEEEEEEEECSSSSSEEC----CGGGEEE--------EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred ccccCeEEEEEEcccCCCCCCce----EEEEecc--------cccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 33 2488899 777653 2222100 001124455 7899999996554 32 3 467
Q ss_pred EEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC-----CeEEEEecCC
Q 012535 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSE 429 (461)
Q Consensus 365 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~ 429 (461)
++||+.. ++ ...+..+...+ ..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 340 ~~~~~~~-~~-~~~lt~~~~~v---------------~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 340 HYIKDTV-EN-AIQITSGKWEA---------------INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEESSCS-TT-CEECSCSSSCE---------------EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEECCC-Cc-eEecccCceEE---------------EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 7777764 33 44444333222 356666 77777665554 8888998864
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2.4e-19 Score=167.14 Aligned_cols=215 Identities=9% Similarity=0.005 Sum_probs=145.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee--------EEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK--------KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
..++.++++ +++.++++++.|+ +++|+....... ...... ........+.+. +++|+|+|+
T Consensus 37 ~~~n~lavs--~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~-------~l~~spdg~ 105 (434)
T 2oit_A 37 ERSSLLAVS--NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV-QGLLVPMKFPIH-------HLALSCDNL 105 (434)
T ss_dssp SCCBCEEEE--TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC-CCEEECCSSCEE-------EEEECTTSC
T ss_pred CCccEEEEe--cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC-ccccccCCCccc-------EEEEcCCCC
Confidence 348899999 4566899998888 999886432110 000000 000000122344 889999999
Q ss_pred cccccccCCCCCccc----cccCCCcEEeeeeecccC-----ccccceeeEeeecccccceeeEEeCCC-CCEEEEe-CC
Q 012535 185 CGERNFGCASNDSSF----PPGGVSSLRLPVVVTSQE-----TNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DD 253 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~----~~~~~~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d 253 (461)
.+ + +++.|+.|++|| +.... ........+. ..+|...|.+++|+|+ +.+|+++ .|
T Consensus 106 ~l------------av~~~sgs~d~~v~iwd-~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 106 TL------------SACMMSSEYGSIIAFFD-VRTFSNEAKQQKRPFAYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp EE------------EEEEEETTTEEEEEEEE-HHHHHCTTCSSCCCSEEEEC-CCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred EE------------EEEEeccCCCceEEEEE-ccccccCCcCCcceeeeeec-cCCCCCceEEEEECCCCCCEEEEEECC
Confidence 85 6 789999999999 54321 0001111222 3679999999999998 8889988 89
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCc
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (461)
|+|++||+++..... ...+|...|++++|+|++ ++|++|+.||.|++||++ +.. ...+..+..
T Consensus 172 g~v~iwD~~~~~~~~--------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~--- 234 (434)
T 2oit_A 172 GSIAVLQVTETVKVC--------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPF--- 234 (434)
T ss_dssp SCEEEEEESSSEEEE--------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTT---
T ss_pred CeEEEEEcCCCccee--------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCcc---
Confidence 999999998663322 234578899999999998 999999999999999998 332 222222210
Q ss_pred cccccccccceeEEEEccCCCEEEEec--CC------eEEEEEccC
Q 012535 334 RSFFTEIIASISDIKFARNGRHILSRD--YM------TLKLWDINM 371 (461)
Q Consensus 334 ~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~------~i~vwd~~~ 371 (461)
.-.+|...|.+++|++++.++++.+ +| .+++|++.+
T Consensus 235 --~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 235 --YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp --CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred --cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 0012335799999999998887632 32 499999985
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=2.4e-18 Score=155.56 Aligned_cols=248 Identities=9% Similarity=0.032 Sum_probs=167.0
Q ss_pred ceEEEEEcCCCCEEE-EeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccccc-CCCcchhhccccccccc
Q 012535 37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~ 114 (461)
.+.+++|+|+|++++ ++..++.|.+||+.+++.. ..+. ++.. .+...
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~~~--------~~~~~ 83 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL-----------------------GRIDLSTPE--------ERVKS 83 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-----------------------EEEECCBTT--------EEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE-----------------------eeEEcCCcc--------ccccc
Confidence 478999999998664 5556789999999876521 1111 1100 00024
Q ss_pred eEEEEEeecCCCcEEEEEe------------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecC
Q 012535 115 INKIRWCQSANSALYLLST------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~------------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (461)
+.+++|+ +++++++++. .++.|.+||+.+++.......... +. .++|+|+
T Consensus 84 ~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---------~~-------~~~~s~d 145 (337)
T 1pby_B 84 LFGAALS--PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---------IT-------MLAWARD 145 (337)
T ss_dssp TTCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---------CC-------CEEECTT
T ss_pred ccceEEC--CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC---------cc-------eeEECCC
Confidence 7789998 5677888876 579999999998876655443211 11 7789999
Q ss_pred CCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCC------
Q 012535 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL------ 254 (461)
Q Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~------ 254 (461)
|+.+ +++ ++.|.+|| +... +....+ ..+. ....+.|+|++..++.+ .++
T Consensus 146 g~~l------------~~~--~~~i~~~d-~~~~------~~~~~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 202 (337)
T 1pby_B 146 GSKL------------YGL--GRDLHVMD-PEAG------TLVEDK-PIQS-WEAETYAQPDVLAVWNQHESSGVMATPF 202 (337)
T ss_dssp SSCE------------EEE--SSSEEEEE-TTTT------EEEEEE-CSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEE
T ss_pred CCEE------------EEe--CCeEEEEE-CCCC------cEeeee-eccc-cCCCceeCCCccEEeeeccCCCceeeee
Confidence 9975 555 68899999 4321 222222 2111 11234789998866554 233
Q ss_pred -----------------eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 255 -----------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 255 -----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
.|.+||+.+.+.. .+ .+..+...+.+++|+|++ ++++++ ++.|.+||+.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~------~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 203 YTARKDIDPADPTAYRTGLLTMDLETGEMA-MR------EVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNAS 272 (337)
T ss_dssp EEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE------EEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEE
T ss_pred eccccccccccccccccceEEEeCCCCCce-Ee------ecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcC
Confidence 4688998865433 21 233455678899999999 888877 79999999988764
Q ss_pred ccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
+..+... ..+.+++|+|+|++|++++ ++.|++||+.+ ++.+..+..+..
T Consensus 273 ----~~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~-~~~~~~~~~~~~ 322 (337)
T 1pby_B 273 ----IKRVPLP-------------HSYYSVNVSTDGSTVWLGGALGDLAAYDAET-LEKKGQVDLPGN 322 (337)
T ss_dssp ----EEEEECS-------------SCCCEEEECTTSCEEEEESBSSEEEEEETTT-CCEEEEEECGGG
T ss_pred ----cceecCC-------------CceeeEEECCCCCEEEEEcCCCcEEEEECcC-CcEEEEEEcCCC
Confidence 2333322 3578899999999888865 59999999986 787777766543
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=1.4e-18 Score=160.51 Aligned_cols=302 Identities=11% Similarity=0.034 Sum_probs=174.2
Q ss_pred EEEcCCCCEEEEeec-CCc--EEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEE
Q 012535 41 IEFDKSGDHLATGDR-GGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (461)
Q Consensus 41 ~~~s~~g~~l~tg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (461)
.+|||||++||.++. +|. |.+||+.+++. .....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC------------CCccc
Confidence 889999999999887 674 77888876642 12223343 33446
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC---
Q 012535 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS--- 194 (461)
Q Consensus 118 v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 194 (461)
++|+ +|++.|+.++.++.|.+||+.+++...+...+.. .+... ...++|+++.+........
T Consensus 86 ~~~s--pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--------~~~~~-----~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 86 GFLS--PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--------WVGYG-----TWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp CEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEE-----EEEECTTSSEEEEEEEEGGGCC
T ss_pred eEEc--CCCCEEEEEeCCCeEEEEECCCCcceeeeechhh--------ccccc-----ceeECCCCCeeccccccCcccc
Confidence 7898 6788999999999999999999876665443211 01000 1133677765421100000
Q ss_pred --CC-----ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-C------CCeEEEE
Q 012535 195 --ND-----SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D------DLRINLW 259 (461)
Q Consensus 195 --~~-----~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~------d~~i~iw 259 (461)
.+ ..+....+..|.+|| +...+ ... +..+...+..++|+| +++.|+.. . ...|.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d-~~~g~------~~~--l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVD-LKTGE------STV--ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEE-TTTCC------EEE--EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred cccccchhhhhhccCCcceEEEEE-CCCCc------eEE--eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 00 012244557788888 33221 111 134456788999999 99988876 3 2377777
Q ss_pred EccCCCCceeeeccCCCCCCCCC--cceEEEEEeCCCCCeEEEEec-CC----eEEEEECCCcccccccccccccccCCC
Q 012535 260 NLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSS-KG----SIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
|..... ... +..+. ..+..++|+|+| +.|+..+. ++ .|.+||+.+++... +..+.....
T Consensus 222 d~~~~~-~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~~~~-- 287 (388)
T 3pe7_A 222 NEDGTN-MRK--------VKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENRQ--LTSMPACSH-- 287 (388)
T ss_dssp ETTSCC-CEE--------SCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEEE--EEEECCEEE--
T ss_pred eCCCCc-eEE--------eeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceEE--EEcCCCcee--
Confidence 876432 222 22233 357789999999 66655443 22 39999999876311 122221000
Q ss_pred ccccccccccceeEEEEccCCCEEEEe---------c-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCcccee
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSR---------D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~---------~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (461)
. ......+.|+|||+.|+.. . +..|++||+.. ..+..+..+..... .++. +....+.
T Consensus 288 ----~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~---~~~~-~~~~~~~ 354 (388)
T 3pe7_A 288 ----L---MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN--GTQHRVARHDTSWK---VFEG-DRQVTHP 354 (388)
T ss_dssp ----E---EECTTSSEEEEEECCC------------CCCCEEEEEETTT--TEEEEEEECCCCCC---CBTT-BSSTTCC
T ss_pred ----e---eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC--CceEEeccccCccc---cccc-ccccCCC
Confidence 0 0001223799999988852 2 37899999974 34455665554100 0000 0000123
Q ss_pred eEEEecCCCEEEEec-CCCeEEEEecC
Q 012535 403 ECCLSGDGGRVATGS-YSNLFRVFGCS 428 (461)
Q Consensus 403 ~~~~s~~~~~l~s~~-~dg~i~iw~~~ 428 (461)
.++|+|||+.|+..+ .+|...||.+.
T Consensus 355 ~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 355 HPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CccCCCCCCEEEEEecCCCceeEEEEE
Confidence 789999999887655 46766677654
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=3.9e-19 Score=173.25 Aligned_cols=239 Identities=11% Similarity=0.023 Sum_probs=157.1
Q ss_pred cceEEEEEeecCCCcEEEEEeC-CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
.+|.+++|+ +||++|+.++. ||+++||++.+++...+...+ ...+. .++|+|+ +.+
T Consensus 22 ~~~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~--------~~~~~-------~~~~spd-~~l----- 78 (582)
T 3o4h_A 22 VEKYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETVKLNREP--------INSVL-------DPHYGVG-RVI----- 78 (582)
T ss_dssp SCEEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEEECCSSC--------CSEEC-------EECTTCS-EEE-----
T ss_pred cchheeecC--CCCCeEEEEEccCCceeEEEEcCCCcEeeeccc--------ccccc-------cccCCCC-eEE-----
Confidence 569999999 56889998876 999999999777655443322 11223 6688888 553
Q ss_pred CCCCCccccccC---CCcEEeeeeeccc-CccccceeeEeeecccccceeeEEeCCCCC--EEEEeCCCeEEEEEccCCC
Q 012535 192 CASNDSSFPPGG---VSSLRLPVVVTSQ-ETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISADDLRINLWNLEISN 265 (461)
Q Consensus 192 ~~~~~~~~~~~~---~~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~d~~i~iwd~~~~~ 265 (461)
++++. +...++|. +... .... . ..... ..+...+|+|+++ .++++.++.+.+||+.+++
T Consensus 79 -------~~~~~~~g~~~~~l~~-~~~~~~g~~----~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 79 -------LVRDVSKGAEQHALFK-VNTSRPGEE----Q-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp -------EEEECSTTSCCEEEEE-EETTSTTCC----E-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred -------EEeccCCCCcceEEEE-EeccCCCcc----c-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 54443 45567766 3220 1111 1 11111 2233567788775 3444555556699998653
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC----CeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
...+ ..+.. .+++|+|+| ++|++++.+ +.|++||+.+++. ..+..+.
T Consensus 144 -~~~l--------~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~~------------ 194 (582)
T 3o4h_A 144 -LREL--------ARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDSGE------------ 194 (582)
T ss_dssp -EEEE--------EEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCC-----EEECCSS------------
T ss_pred -EEEe--------ecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeecCC------------
Confidence 2222 11222 789999999 899988877 7899999988763 3333332
Q ss_pred cceeEEEEccCCCEEEEec-CC--eEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 342 ASISDIKFARNGRHILSRD-YM--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
..+..++|+|||++|++++ ++ .|++||+.+ ++.. .+..|...+.... .......+|+|||.++++++.
T Consensus 195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 195 GSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEE
T ss_pred CccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEc
Confidence 6789999999999999765 46 899999985 5555 6666654432100 000012339999999999999
Q ss_pred CCeEEEEec
Q 012535 419 SNLFRVFGC 427 (461)
Q Consensus 419 dg~i~iw~~ 427 (461)
||.+++|++
T Consensus 266 ~g~~~l~~~ 274 (582)
T 3o4h_A 266 EGRSAVFID 274 (582)
T ss_dssp TTEEEEEET
T ss_pred CCcEEEEEE
Confidence 999999999
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=4.5e-18 Score=170.21 Aligned_cols=259 Identities=11% Similarity=0.087 Sum_probs=161.6
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
....+++|+|||++|+++ ||+|++||+.+++. ...+.+|... ......
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~ 64 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-----------------------SVFLENSTFD-------EFGHSI 64 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-----------------------EEEECTTTTT-------TCCSCC
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCce-----------------------EEEEechhhh-------hhcccc
Confidence 346689999999999886 89999999988752 2234444310 000123
Q ss_pred EEEEEeecCCCcEEEEEeCC---------CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..++|| +||++|+.++.+ +.+.+||+.+++...
T Consensus 65 ~~~~~S--pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------------------------ 106 (740)
T 4a5s_A 65 NDYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------------------------ 106 (740)
T ss_dssp CEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------------------------
T ss_pred cceEEC--CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE------------------------------------
Confidence 457888 678899998876 445577776664321
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~ 266 (461)
+..|...+...+|||||+.||.+.++.|++|++.++..
T Consensus 107 ------------------------------------------l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 107 ------------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ------------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred ------------------------------------------cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence 12334567789999999999988788999999986543
Q ss_pred ceeeeccCCCCCCCCCc-----------------ceEEEEEeCCCCCeEEEEecCC------------------------
Q 012535 267 SFNIVDVKPANMEDLTE-----------------VITSAEFHPTHCNMLAYSSSKG------------------------ 305 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-----------------~v~~v~~~p~~~~~l~~~~~dg------------------------ 305 (461)
. ++ +..++.. ....+.||||| +.||.++.|.
T Consensus 145 ~-~l------t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 145 Y-RI------TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp E-EC------CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred E-EE------cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 2 22 1222222 12358999999 8888876443
Q ss_pred ------------eEEEEECCC---cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec----C-CeEE
Q 012535 306 ------------SIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLK 365 (461)
Q Consensus 306 ------------~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~----d-~~i~ 365 (461)
.|++||+.+ +.... ...+... ..+.+|...+..++|+|||+.++... + ..|+
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~--~~~l~~~------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~ 288 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNAT--SIQITAP------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMD 288 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCC--EEEECCC------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEE
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcce--EEEecCC------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEE
Confidence 345555554 31000 0111100 00113557799999999999776532 2 4799
Q ss_pred EEEccCCCC------CeeEE--eeccCccccccccccCCCccceeeEEEecCCCEEE-EecC-C--CeEEEEecCCCCcc
Q 012535 366 LWDINMDSG------PVATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSY-S--NLFRVFGCSEGSAE 433 (461)
Q Consensus 366 vwd~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~-d--g~i~iw~~~~~~~~ 433 (461)
+||+.+ ++ .+..+ ..|...+.. ......+|+|||+.|+ ..+. + ..|++|++.+++..
T Consensus 289 ~~d~~t-g~~~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 289 ICDYDE-SSGRWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEET-TTTEEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEECCC-CccccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 999986 55 12223 445544320 0012678999999877 5553 3 46889998876544
No 161
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=4.9e-16 Score=136.97 Aligned_cols=264 Identities=11% Similarity=0.188 Sum_probs=176.8
Q ss_pred cCCceeeeccccccCCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccc
Q 012535 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (461)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (461)
.....|.+...|+.+.. ...+-..+.+++++++|+++++...++.|.+||.....
T Consensus 8 ~~~~~~~~~~~~g~~g~--~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~----------------------- 62 (286)
T 1q7f_A 8 IKRQRMIYHCKFGEFGV--MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF----------------------- 62 (286)
T ss_dssp CCCEEECEEEEECCBSS--STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE-----------------------
T ss_pred cccceeEEEEeccCCCC--CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE-----------------------
Confidence 34456666666665432 44567789999999999988888889999999976321
Q ss_pred ccccc------cCCCcchhhccccccccceEEEEEeecCCCcEEEEEeC-CCeEEEEEccCCceeEEeeeecCCCccCCC
Q 012535 92 YKTEF------QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (461)
Q Consensus 92 ~~~~~------~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 164 (461)
...+ .++. ..+..+++.+ +++.++++... ++.|.+|+. +++......
T Consensus 63 -~~~~~~~~~~~~~~------------~~p~~i~~~~-~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~----------- 116 (286)
T 1q7f_A 63 -KFQFGECGKRDSQL------------LYPNRVAVVR-NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG----------- 116 (286)
T ss_dssp -EEEECCBSSSTTCB------------SSEEEEEEET-TTTEEEEEECGGGCEEEEECT-TSCEEEEEC-----------
T ss_pred -EEEecccCCCcccc------------cCceEEEEEc-CCCeEEEEcCCCCCEEEEECC-CCcEEEEec-----------
Confidence 1111 1222 3478899852 34555555433 788999983 343221110
Q ss_pred CCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCC
Q 012535 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (461)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (461)
..+...+.+++++++
T Consensus 117 -----------------------------------------------------------------~~~~~~~~~i~~~~~ 131 (286)
T 1q7f_A 117 -----------------------------------------------------------------ATILQHPRGVTVDNK 131 (286)
T ss_dssp -----------------------------------------------------------------TTTCSCEEEEEECTT
T ss_pred -----------------------------------------------------------------CccCCCceEEEEeCC
Confidence 112235678999999
Q ss_pred CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccc
Q 012535 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (461)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 323 (461)
++++++. .++.|.+||.. ++.. ..+ ....+...+..++++|++ +++++...++.|++||..... +.
T Consensus 132 g~l~v~~~~~~~i~~~~~~-g~~~-~~~-----~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~-----~~ 198 (286)
T 1q7f_A 132 GRIIVVECKVMRVIIFDQN-GNVL-HKF-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-----LR 198 (286)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEE-EEE-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-----EE
T ss_pred CCEEEEECCCCEEEEEcCC-CCEE-EEe-----CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE-----EE
Confidence 9988877 68999999965 3322 211 111344568999999998 787877889999999985432 23
Q ss_pred ccccccCCCccccccccccceeEEEEccCCCEEEEec-CC-eEEEEEccCCCCCeeEEeeccCccccccccccCCCccce
Q 012535 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (461)
.+.... +...+..++++++|+++++.. ++ .|.+||.. ++.+..+..+.... .+
T Consensus 199 ~~~~~g----------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~ 253 (286)
T 1q7f_A 199 QIGGEG----------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QC 253 (286)
T ss_dssp EESCTT----------TSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CE
T ss_pred EEccCC----------ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cc
Confidence 332211 114578999999999888865 44 99999964 67777776654321 02
Q ss_pred eeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 402 FECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
..++++|+|+++++ +.|+.|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 48999999987777 56899999998654
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=3.5e-18 Score=170.98 Aligned_cols=259 Identities=11% Similarity=0.028 Sum_probs=160.4
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
..++|+ +++. ++..+.|++|++||+.+++...+...+... ...+. +++|+|||+.+
T Consensus 19 ~~~~~s--~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~-------~~~~SpDg~~l--------- 74 (719)
T 1z68_A 19 FFPNWI--SGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMK-----SVNAS-------NYGLSPDRQFV--------- 74 (719)
T ss_dssp CCCEES--SSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHH-----TTTCS-------EEEECTTSSEE---------
T ss_pred CccEEC--CCCe-EEEEcCCCCEEEEEcCCCcEEEEEcccccc-----cccee-------eEEECCCCCeE---------
Confidence 367898 5564 555667999999999999877665543210 00122 77999999986
Q ss_pred CccccccC---------CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCC
Q 012535 196 DSSFPPGG---------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (461)
Q Consensus 196 ~~~~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~ 266 (461)
+.++. ++.|++|| +...+.... . .-...+..++|+|||+.|+.+.++.|++|++.+++.
T Consensus 75 ---a~~~~~~~~~~~s~~~~i~~~d-~~~g~~~~~---~-----~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 75 ---YLESDYSKLWRYSYTATYYIYD-LSNGEFVRG---N-----ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPP 142 (719)
T ss_dssp ---EEEEEEEECSSSCEEEEEEEEE-TTTTEECCS---S-----CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred ---EEEecCceeEEeecceEEEEEE-CCCCccccc---e-----ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCc
Confidence 55544 68999999 432211000 0 012458889999999999999888999999986543
Q ss_pred ceeee-ccCC-CCCCCCCcc---------eEEEEEeCCCCCeEEEEecCC------------------------------
Q 012535 267 SFNIV-DVKP-ANMEDLTEV---------ITSAEFHPTHCNMLAYSSSKG------------------------------ 305 (461)
Q Consensus 267 ~~~~~-~~~~-~~~~~~~~~---------v~~v~~~p~~~~~l~~~~~dg------------------------------ 305 (461)
. .+. .... ..+.++... ..+++|+||| +.|++++.|.
T Consensus 143 ~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 143 F-QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp E-ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred E-EEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 2 221 0000 001122222 2589999999 8999888653
Q ss_pred ----eEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-----CeEEEEE----ccCC
Q 012535 306 ----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWD----INMD 372 (461)
Q Consensus 306 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-----~~i~vwd----~~~~ 372 (461)
.|++||+.+++.... ..+.. ...+.+|...+..++|+||++++++..+ ..|++|| +.+
T Consensus 221 ~~~~~l~~~d~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~- 291 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGP--QEVPV------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT- 291 (719)
T ss_dssp CCEEEEEEEESSCHHHHCC--EECCC------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-
T ss_pred CCeeEEEEEECCCCCccce--eEccC------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-
Confidence 788999987653100 01100 0112344578999999999887777431 3588899 664
Q ss_pred CCCeeEE----eeccCccccccccccCCCccceeeEEEecCCCEEEE--ecCCC--eEEEEecCCCC
Q 012535 373 SGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGS 431 (461)
Q Consensus 373 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg--~i~iw~~~~~~ 431 (461)
++....+ ..|...+... ....+.|+|||+.|+. +..+| .|++|++.+++
T Consensus 292 g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 292 WDCPKTQEHIEESRTGWAGGF----------FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp EECCGGGEEEEECSSSCSSSS----------SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CceEEEEecccccCCceEccc----------cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 4444444 3454433100 0015789999996554 44455 67778877664
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.9e-17 Score=150.16 Aligned_cols=258 Identities=11% Similarity=0.011 Sum_probs=157.3
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcC-CCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
...+..++|+|+|++|++++.+ .|.+|++. +++.. .......+ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---------------------~~~~~~~~-------------g 83 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---------------------HEASHPIG-------------G 83 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---------------------EEEEEECC-------------S
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---------------------EeeEeecC-------------C
Confidence 3468899999999999999888 99999986 44311 00011111 1
Q ss_pred ceEEEEEeecCCCcE--EEEEe-------------CCCeEEEEEcc-CCceeEEeeeecCCCccCCCCCccccccccCcc
Q 012535 114 KINKIRWCQSANSAL--YLLST-------------NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~--l~~~~-------------~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (461)
.+.+++|+ +++++ ++++. .++++.+|++. .++........... ....+. .+
T Consensus 84 ~~~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----~~~~~~-------~~ 150 (365)
T 1jof_A 84 HPRANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----ENTGIH-------GM 150 (365)
T ss_dssp SGGGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----TTCCEE-------EE
T ss_pred CCccEEEC--CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----CCCcce-------EE
Confidence 13446777 56774 44443 68999999997 45544333221000 011122 78
Q ss_pred eeecCCCcccccccCCCCCccccc-cCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCCEEEEe--CC
Q 012535 178 SYMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA--DD 253 (461)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~--~d 253 (461)
+|+|+|+.+ +++ ..++.|.+|+ +.. .... ....... ..|...+..++|+|+|++++++ .+
T Consensus 151 ~~spdG~~l------------~~~~~~~~~v~~~~-~~~--~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~ 214 (365)
T 1jof_A 151 VFDPTETYL------------YSADLTANKLWTHR-KLA--SGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG 214 (365)
T ss_dssp EECTTSSEE------------EEEETTTTEEEEEE-ECT--TSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred EECCCCCEE------------EEEcCCCCEEEEEE-ECC--CCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC
Confidence 999999975 444 3468999999 531 1111 1111111 1245678999999999988776 47
Q ss_pred CeEEEEEccC--CCCce--eeeccCCCCCCCCCc------ceEEEE-EeCCCCCeEEEEecC-C-----eEEEEECC-Cc
Q 012535 254 LRINLWNLEI--SNQSF--NIVDVKPANMEDLTE------VITSAE-FHPTHCNMLAYSSSK-G-----SIRLIDMR-QS 315 (461)
Q Consensus 254 ~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~------~v~~v~-~~p~~~~~l~~~~~d-g-----~i~iwd~~-~~ 315 (461)
+.|.+|+++. ++... ..+..-+..+.++.. .+..++ |+|+| ++|+++..+ . .|.+|++. ++
T Consensus 215 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 8999998763 22111 111111111222332 588999 99999 777766543 3 89999996 44
Q ss_pred cccccccc-ccccccCCCccccccccccceeEEEEcc---CCCEEEEec-C-CeEEEEEccC
Q 012535 316 ALCDTHSK-LFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-Y-MTLKLWDINM 371 (461)
Q Consensus 316 ~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~g~~l~s~~-d-~~i~vwd~~~ 371 (461)
+... +. ....+. ..+..++|+| ||++|++++ + +.|.+|+++.
T Consensus 294 ~~~~--~~~~~~~~~------------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 294 SIEK--QLFLSPTPT------------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CEEE--EEEEEECSS------------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CEEE--eeeeeecCC------------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 4210 00 111111 3466789999 899999875 4 8999999975
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=7.2e-17 Score=149.38 Aligned_cols=302 Identities=12% Similarity=0.055 Sum_probs=174.9
Q ss_pred ccceEEEEEcCCCCEEEEeecC---CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
...+.+++|||||++||..... ..|.+||+.+++.. .+..+..
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~------------------------~l~~~~~---------- 80 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV------------------------QLTEGKG---------- 80 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE------------------------ECCCSSC----------
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE------------------------EeecCCC----------
Confidence 3447788999999998877543 36888888765421 1222210
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCC-cccccc------ccCcceeecCCC
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP-IFGSHV------SAIPKSYMANGG 184 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~------~~~~~~~~~~g~ 184 (461)
.....+.|+ +|+++|+.++.++.|.+|++.+++...+...+..... .+. +..... ......++|+++
T Consensus 81 -~~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~---~g~~l~~~~~~~~~~~~~~~~~~spdg~ 154 (396)
T 3c5m_A 81 -DNTFGGFIS--TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKG---YGTWVANSDCTKLVGIEILKRDWQPLTS 154 (396)
T ss_dssp -BCTTTCEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE---EEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred -CccccceEC--CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCC---CCCEEEeccCCccccccccccccCCCCc
Confidence 112336788 6788999999999999999998876655443211000 000 000000 000145677777
Q ss_pred cccccccCCCCCccccc-----cCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-C--C--
Q 012535 185 CGERNFGCASNDSSFPP-----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D--D-- 253 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~--d-- 253 (461)
.+ +.. ..+..|.+|| +...+ .... ..+...+..+.|+| ++..|+.. . .
T Consensus 155 ~~------------~~~~~~~~~~~~~l~~~d-~~~g~------~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~ 213 (396)
T 3c5m_A 155 WE------------KFAEFYHTNPTCRLIKVD-IETGE------LEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDL 213 (396)
T ss_dssp HH------------HHHHHHHTCCCEEEEEEE-TTTCC------EEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSS
T ss_pred ce------------eeeeeccCCCcceEEEEE-CCCCc------EEee--ccCCcccccceECCCCCCEEEEEecCCCCC
Confidence 64 332 4567788888 43211 1111 23456788999999 78766654 3 2
Q ss_pred --CeEEEEEccCCCCceeeeccCCCCCCCC-CcceEEEEEeCCCCCeEEEEecC-----CeEEEEECCCccccccccccc
Q 012535 254 --LRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 254 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 325 (461)
..|.+||+.... ...+ .... ...+..++|+|++ +.|+.++.+ +.|++||+.+++. ..+
T Consensus 214 ~~~~l~~~d~~~~~-~~~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~-----~~l 279 (396)
T 3c5m_A 214 VDARMWLVNEDGSN-VRKI-------KEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLEN-----EEV 279 (396)
T ss_dssp CSCCCEEEETTSCC-CEES-------SCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCE-----EEE
T ss_pred CCceEEEEECCCCc-eeEe-------eccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCe-----EEe
Confidence 468888886433 2221 1111 3457889999999 766666554 4599999987753 111
Q ss_pred ccccCCCccccccccccceeEEEEcc-CCCEEEEec-----------------CCeEEEEEccCCCCCeeEEeeccCccc
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-----------------YMTLKLWDINMDSGPVATFQVHEHLRP 387 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~s~~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~ 387 (461)
... .... +.|+| ||++++.+. +..|++||+.. ++ ...+..+.....
T Consensus 280 ~~~-------------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~ 343 (396)
T 3c5m_A 280 MVM-------------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KS-AQKLCKHSTSWD 343 (396)
T ss_dssp EEC-------------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TB-CCEEEECCCCCC
T ss_pred eeC-------------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cc-eEEccCCCCccc
Confidence 111 1122 88999 999888642 37899999975 44 345555543110
Q ss_pred cccccccCCCccceeeEEEecCCCEEEEecC-CCe--EEEEecCCCC
Q 012535 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGS 431 (461)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~--i~iw~~~~~~ 431 (461)
. +..+....+..++|+|||+.|+.++. ++. |++.++..++
T Consensus 344 ~----~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 344 V----LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp C----BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred c----ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 0 00000000136789999998877654 454 4445555543
No 165
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.76 E-value=5.3e-16 Score=140.89 Aligned_cols=174 Identities=10% Similarity=0.086 Sum_probs=108.3
Q ss_pred ccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCC----CCCCCCcceEEEEEeCCCCCeEEEEecCCe
Q 012535 233 DYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 306 (461)
...+..++|+|++++|+++ .++.|.+|++........+...... ........+.+++|+|++ +++++...++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~ 163 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDK 163 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCE
Confidence 3556788999999977776 5789999998643332222111000 001123458899999999 67777777899
Q ss_pred EEEEECC-CcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCee---EEe
Q 012535 307 IRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA---TFQ 380 (461)
Q Consensus 307 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~---~~~ 380 (461)
|++||+. .+.... ...+.... ...+..++|+|||++|++++ ++.|.+|++......+. .+.
T Consensus 164 v~~~~~~~~g~~~~--~~~~~~~~-----------g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 230 (347)
T 3hfq_A 164 VYVYNVSDAGQLSE--QSVLTMEA-----------GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK 230 (347)
T ss_dssp EEEEEECTTSCEEE--EEEEECCT-----------TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEECCCCcEEE--eeeEEcCC-----------CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence 9999998 443211 11111111 03567899999999777753 48999999974222222 222
Q ss_pred eccCccccccccccCCCccceeeEEEecCCCEE-EEecCCCeEEEEecCC
Q 012535 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSE 429 (461)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~ 429 (461)
...... .....+..++|+|||++| +++..++.|.+|++..
T Consensus 231 ~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 231 TIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp SSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred ecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 111100 000113479999999987 5556789999999973
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=3.8e-16 Score=154.73 Aligned_cols=310 Identities=10% Similarity=0.044 Sum_probs=176.8
Q ss_pred ccccccceEEEEEcCCCCEEEEe--ecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATG--DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
...|...|..++|++++-++++. +.++...||....+.. ...+..|.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~l~~~~-------- 67 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-----------------------EESALPAP-------- 67 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-----------------------EEESSCTT--------
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-----------------------cceeCCCC--------
Confidence 34588899999999887677776 5588999999643321 11233332
Q ss_pred cccccceE---------EEEEeecCCCcE-EEEEeC-CCeEEEEEcc--C-CceeEEeeeecCCCccCCCCCcccccccc
Q 012535 109 LEIEEKIN---------KIRWCQSANSAL-YLLSTN-DKTIKLWKVQ--E-KKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (461)
Q Consensus 109 ~~~~~~v~---------~v~~~p~~~~~~-l~~~~~-d~~i~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (461)
..+. ..+|+.++|++. |+.++. +..|.+|++. + ++...+...... .....+.
T Consensus 68 ----~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~----~~~~~~~------ 133 (662)
T 3azo_A 68 ----WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAV----GGGLRWA------ 133 (662)
T ss_dssp ----CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCS----TTCEEEE------
T ss_pred ----ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccC----CCCcccc------
Confidence 1122 455663366777 666543 5566666665 3 443332221000 0011122
Q ss_pred CcceeecCCCcccccccCCCCCccccccCC----------CcEEeeeeecccCccccceeeEeeec-ccccceeeEEeCC
Q 012535 175 IPKSYMANGGCGERNFGCASNDSSFPPGGV----------SSLRLPVVVTSQETNLVAGCRRIYAH-AHDYHINSISNNS 243 (461)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~ 243 (461)
.++|+|+|+.+ +.++.+ ..|.+|+ +........... +.+ . .+...+..++|+|
T Consensus 134 -~~~~spDg~~l------------~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-~~l-~~~~~~~~~~~~~Sp 197 (662)
T 3azo_A 134 -DPVLLPERGEV------------WCMAEEFTGEGPSDVRRFLAAVP-LDGSAAADRSAV-REL-SDDAHRFVTGPRLSP 197 (662)
T ss_dssp -EEEEETTTTEE------------EEEEEEECSSSTTCEEEEEEEEE-TTSTTTTCGGGS-EES-SCSCSSEECCCEECT
T ss_pred -CcEECCCCCEE------------EEEEecccCCCCCCceeEEEEEE-CCCCccccCCce-eEE-EecCCCcccCceECC
Confidence 67999999986 555544 5788888 432100000011 111 3 4456788899999
Q ss_pred CCCEEEEe-CC--------CeEEEEEccC-CC--CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC--eEEE
Q 012535 244 DGETFISA-DD--------LRINLWNLEI-SN--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRL 309 (461)
Q Consensus 244 ~~~~l~~~-~d--------~~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i 309 (461)
||+.|+.+ .+ ..|.+||+.. +. ....+ ..++...+..++|+|+| ++++++..++ .|.+
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-------~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~ 269 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-------LGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHR 269 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-------EEETTBCEEEEEECTTS-CEEEEECTTSSCEEEE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-------CCCCCceEcceEECCCC-eEEEEECCCCCeEEEE
Confidence 99999876 33 4799999983 31 22221 22346788999999999 7888888888 6666
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 389 (461)
||+.+++.. .....+.... ...+ ...+..++|+|+++++++++++.++||.++..+..+..+..|...+
T Consensus 270 ~~~~~~~~~----~l~~~~~~~~-~p~w---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~--- 338 (662)
T 3azo_A 270 VDPATGAAT----QLCRREEEFA-GPLW---TPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEW--- 338 (662)
T ss_dssp ECTTTCCEE----ESSCCSSBSS-CCCC---STTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSSCCEE---
T ss_pred EECCCCcee----eccccccccc-Cccc---cccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCCCCeE---
Confidence 776555431 1111111000 0000 0115678999999999886557888885543334466666654432
Q ss_pred cccccCCCccceeeEEEecCCC--EEEEecCCC--eEEEEecCCCCcc
Q 012535 390 CDLYENDSIFDKFECCLSGDGG--RVATGSYSN--LFRVFGCSEGSAE 433 (461)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg--~i~iw~~~~~~~~ 433 (461)
..+ |+++++ ++++++.+. .|++||+.+++..
T Consensus 339 ------------~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 339 ------------AAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp ------------EEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred ------------EEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 234 144444 344455554 5666676666543
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=7.1e-15 Score=133.66 Aligned_cols=292 Identities=9% Similarity=0.027 Sum_probs=175.3
Q ss_pred CCCEEEEee------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 46 SGDHLATGD------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 46 ~g~~l~tg~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
+++++++.. .|+.|.+||..+++. ...+..+. .+ .++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-----------------------~~~i~~g~------------~p--~i~ 56 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF-----------------------LGMVPTAF------------NG--HVQ 56 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE-----------------------EEEEECCE------------EE--EEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE-----------------------EEEecCCC------------CC--ceE
Confidence 455555543 477999999877652 22333333 33 889
Q ss_pred EeecCCCcEEEEEe----------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 120 ~~p~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
|+ +|+++++++. .+++|.+||..+.+........... .... ..|..++++|+|+++
T Consensus 57 ~s--pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--~~~g-------~~p~~i~~spdg~~l--- 122 (361)
T 2oiz_A 57 VS--NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--VQGL-------NYDGLFRQTTDGKFI--- 122 (361)
T ss_dssp EC--TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB--CCBC-------CCGGGEEECTTSSEE---
T ss_pred EC--CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc--cccC-------CCcceEEECCCCCEE---
Confidence 98 6788888886 3678999999988776655542110 0000 112278999999986
Q ss_pred ccCCCCCcccccc--CCCcEEeeeeecccCccccceeeEe-eecccccceeeEEeCCCC-CEEEEe-CCCeEEEEEccCC
Q 012535 190 FGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEIS 264 (461)
Q Consensus 190 ~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~ 264 (461)
+++. .++.|.+|| +... +.... + . . .....+.+.|++ ..+++. .||.+.+|+....
T Consensus 123 ---------~v~n~~~~~~v~v~d-~~~~------~~~~~~i-~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 123 ---------VLQNASPATSIGIVD-VAKG------DYVEDVT-A-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp ---------EEEEESSSEEEEEEE-TTTT------EEEEEEG-G-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ---------EEECCCCCCeEEEEE-CCCC------cEEEEEe-c-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 5554 268999999 4322 12222 1 1 1 111224566765 455555 7899999988653
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
......... ...+...... ..+.++|++ ..++..+.++.|.++|+....... ...+...........+ .....
T Consensus 184 g~~~~~~~~-~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~~~~--~p~g~ 256 (361)
T 2oiz_A 184 GKVASQSRS-KQMFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDEDKAKNW--VPGGY 256 (361)
T ss_dssp SSEEEEEEC-CCCSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHHHHHTTC--EECCS
T ss_pred CcEeeeccc-cceEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcccccccc--ccCCe
Confidence 333211100 0011112222 234456777 677777889999999997653210 1111100000000000 00112
Q ss_pred eEEEEccCCCEEEEe-c-----------CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 345 SDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~-~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
..++|+|+++.++++ . .+.|.+||+.+ .+.+..+..+. . ..++|+|||++
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~ 318 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNL 318 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTE
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCE
Confidence 237899998877764 2 24899999996 78888888776 3 39999999999
Q ss_pred EEEecCCCeEEEEecCCC--Ccc
Q 012535 413 VATGSYSNLFRVFGCSEG--SAE 433 (461)
Q Consensus 413 l~s~~~dg~i~iw~~~~~--~~~ 433 (461)
|++++. +.|.+||..++ +..
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEE
T ss_pred EEEeCC-CeEEEEECCCCcceee
Confidence 998887 99999999998 555
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=6.6e-15 Score=132.36 Aligned_cols=256 Identities=8% Similarity=0.068 Sum_probs=160.6
Q ss_pred ccceEEEEEcCCCCEEEEeecC------------------------CcEEEEEcCCCCCCCCcccccccccccccCCccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
-+.|.+++++|+|+++++...+ ++|.+||..+++.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------------------- 81 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------------------- 81 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence 4679999999999999888877 4688888765542
Q ss_pred ccccccc-CCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc-eeEEeeeecCCCccCCCCCcc
Q 012535 91 RYKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIF 168 (461)
Q Consensus 91 ~~~~~~~-~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~v~ 168 (461)
...+. ++- .....|+++ +++.++++...++.|++|+..... ........... +.-.
T Consensus 82 --~~~~~~~~~------------~~p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------g~~~ 139 (329)
T 3fvz_A 82 --LQSSGKNLF------------YLPHGLSID--TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------GSDQ 139 (329)
T ss_dssp --EEEECTTTC------------SSEEEEEEC--TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC------CCST
T ss_pred --EeccCCCcc------------CCceEEEEC--CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC------CCCc
Confidence 11221 222 347899998 567788888889999999986552 22222111000 0000
Q ss_pred ccccccCcceeec-CCCcccccccCCCCCcccccc-CCCcEEeeeeecccCccccceeeEeee-----cccccceeeEEe
Q 012535 169 GSHVSAIPKSYMA-NGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSISN 241 (461)
Q Consensus 169 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~ 241 (461)
.....|..++++| ++... ++.+ .++.|++|+ .+..........-. .++-..+..+++
T Consensus 140 ~~~~~P~~ia~~~~~g~ly------------v~d~~~~~~I~~~~----~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~ 203 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVF------------VSDGYCNSRIVQFS----PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL 203 (329)
T ss_dssp TCCSSEEEEEECTTTCCEE------------EEECSSCCEEEEEC----TTSCEEEEECEECCSSSCCTTEESCEEEEEE
T ss_pred cccCCCcEEEEeCCCCeEE------------EEeCCCCCeEEEEc----CCCCEEEEeccCCCCCCCCCcccCCCcEEEE
Confidence 0111233789999 67653 5554 688999988 22211111100000 112244789999
Q ss_pred CCC-CCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEE-------ecCCeEEEEEC
Q 012535 242 NSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-------SSKGSIRLIDM 312 (461)
Q Consensus 242 ~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-------~~dg~i~iwd~ 312 (461)
+|+ +.++++. .++.|++|+..+++....+ ....+...+..++|+| + ..+++. ..+..|++||+
T Consensus 204 d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~------~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 204 VPHLDQLCVADRENGRIQCFKTDTKEFVREI------KHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEE------CCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEET
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcEEEEE------eccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEc
Confidence 999 6666666 7999999999855433322 2234566788999999 4 333333 34458999999
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEcc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~ 370 (461)
.+++. +..+... .++...+.+++++|+|.++++.. ++.|++|++.
T Consensus 276 ~~g~~----~~~~~~~---------~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 276 SSGEI----IDVFKPV---------RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTCCE----EEEECCS---------SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCeE----EEEEcCC---------CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 88875 3333211 11225689999999996666654 5899999986
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=2.7e-15 Score=136.47 Aligned_cols=274 Identities=9% Similarity=0.023 Sum_probs=163.2
Q ss_pred EEEEcCCCCEEEEee----------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.++|+|||++|++++ .++.|.+||..+.+.. ..+...... .
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~-----------------------~~i~~~~~~------~ 104 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE-----------------------KEISLPPKR------V 104 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE-----------------------EEEEECTTB------C
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE-----------------------EEEEcCccc------c
Confidence 899999999999886 3678999998765422 111110000 0
Q ss_pred ccccceEEEEEeecCCCcEEEEEeC--CCeEEEEEccCCceeEE-eeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
........++++ ++|++++++.. +++|.+||+.+++.... ..... .. .+.+.|++...
T Consensus 105 ~~g~~p~~i~~s--pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----------~~-------~v~~~p~~~~~ 165 (361)
T 2oiz_A 105 QGLNYDGLFRQT--TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----------CW-------SVIPQPNRPRS 165 (361)
T ss_dssp CBCCCGGGEEEC--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----------EE-------EEEECTTSSSE
T ss_pred ccCCCcceEEEC--CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----------cc-------eeEEcCCCCee
Confidence 000235678898 67889988863 68999999998876544 32210 00 12345555322
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeE--eeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR--IYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (461)
+++.+.||.+.+++ +..... .. .... ..+...... ..+.+++++..++.. .++.+.++|+..
T Consensus 166 -----------~~~~~~dg~~~~v~-~~~~g~-~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 166 -----------FMTICGDGGLLTIN-LGEDGK-VA-SQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp -----------EEEEETTSSEEEEE-ECTTSS-EE-EEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred -----------EEEECCCCcEEEEE-ECCCCc-Ee-eeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecC
Confidence 36677788888877 322111 10 0000 011122222 233446677666655 688999999874
Q ss_pred CCCce-eeeccCCC---CCCCCCcceEEEEEeCCCCCeEEEEec-----------CCeEEEEECCCcccccccccccccc
Q 012535 264 SNQSF-NIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSS-----------KGSIRLIDMRQSALCDTHSKLFEEQ 328 (461)
Q Consensus 264 ~~~~~-~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (461)
..... ..+.+... ...........++|+|++ +.++++.. .+.|.+||+.+.+. +.++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~----v~~i~~~ 305 (361)
T 2oiz_A 231 DEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR----VARIPGR 305 (361)
T ss_dssp SSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE----EEEEECT
T ss_pred CCceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCCCcccccCCCceEEEEECCCCcE----EEEEecC
Confidence 43221 11100000 000001112237899998 55555443 35899999998875 4555443
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCC--CCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
. +.+++|+|||++|++++++.|.+||..+ + +.+..+..+.... ..+++
T Consensus 306 -------------~-p~~ia~spdg~~l~v~n~~~v~v~D~~t-~~l~~~~~i~~~G~~P---------------~~~~~ 355 (361)
T 2oiz_A 306 -------------D-ALSMTIDQQRNLMLTLDGGNVNVYDISQ-PEPKLLRTIEGAAEAS---------------LQVQF 355 (361)
T ss_dssp -------------T-CCEEEEETTTTEEEEECSSCEEEEECSS-SSCEEEEEETTSCSSE---------------EEEEE
T ss_pred -------------C-eeEEEECCCCCEEEEeCCCeEEEEECCC-CcceeeEEeccCCCCc---------------EEEEe
Confidence 3 7899999999999987779999999986 7 7776664333332 37999
Q ss_pred ecCCC
Q 012535 407 SGDGG 411 (461)
Q Consensus 407 s~~~~ 411 (461)
+|+|+
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99986
No 170
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.69 E-value=2.4e-15 Score=136.54 Aligned_cols=249 Identities=8% Similarity=-0.009 Sum_probs=144.0
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCc
Q 012535 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (461)
Q Consensus 118 v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (461)
++++ .++.++++++.+++|.+||+.+++.......... ..+ ..++|+|+|+.+
T Consensus 5 ~~~~--~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-------~~~-------~~~~~s~dg~~~----------- 57 (349)
T 1jmx_B 5 PALK--AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-------FGP-------GTAMMAPDNRTA----------- 57 (349)
T ss_dssp CCCC--TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-------CSS-------CEEEECTTSSEE-----------
T ss_pred cccc--CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-------CCC-------ceeEECCCCCEE-----------
Confidence 3454 5677889999999999999999887665543320 011 167999999864
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeeccc-----ccceeeEEeCCCCCEEEEe-CC------------CeEEEE
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-----DYHINSISNNSDGETFISA-DD------------LRINLW 259 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~-~d------------~~i~iw 259 (461)
+++...++.|.+|| +... +........+ ...+..++|+|++++++++ .+ +.|.+|
T Consensus 58 ~v~~~~~~~i~~~d-~~t~------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~ 130 (349)
T 1jmx_B 58 YVLNNHYGDIYGID-LDTC------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 130 (349)
T ss_dssp EEEETTTTEEEEEE-TTTT------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred EEEeCCCCcEEEEe-CCCC------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEE
Confidence 35666789999999 4221 1222221122 2347889999999999987 44 999999
Q ss_pred EccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCc------
Q 012535 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT------ 333 (461)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------ 333 (461)
|+.+++....+ ....+...+.+++|+|++ + +++++ +.|.+||+.+++.. ..+.......+
T Consensus 131 d~~~~~~~~~~------~~~~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~ 196 (349)
T 1jmx_B 131 STADGLEAKPV------RTFPMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYT----VALPLRNWNRKGYSAPD 196 (349)
T ss_dssp EGGGGGGBCCS------EEEECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEE----EEECSTTCCCTTBCCCB
T ss_pred ECCCcccccee------eeccCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCcee----ccccccccCCccccCcc
Confidence 99864322111 011133468899999999 6 44443 44999999887652 22221110000
Q ss_pred -ccccc-----ccccceeEEEEccCCCEEEEec-C-CeEEEEEccCCCCCeeEEe--eccCccccccccccCCCccceee
Q 012535 334 -RSFFT-----EIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFE 403 (461)
Q Consensus 334 -~~~~~-----~h~~~v~~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~ 403 (461)
...+. ........+++++++....... . ..+..+|..+ + .+..+. .+... +..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~---------------~~~ 259 (349)
T 1jmx_B 197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT-G-KTHTQEFADLTEL---------------YFT 259 (349)
T ss_dssp CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT-C-CEEEEEEEECSSC---------------EEE
T ss_pred ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC-C-cEEecccccCCCc---------------cee
Confidence 00000 0001345577776553221111 1 1122244432 1 111111 11111 248
Q ss_pred EEEec-CCCEEEEecCCCeEEEEecCCCCcc
Q 012535 404 CCLSG-DGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 404 ~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
++|+| ++++|+++ ++.|++||+.+++..
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~ 288 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLI 288 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence 99999 99999988 889999999987654
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=3.8e-14 Score=125.48 Aligned_cols=240 Identities=8% Similarity=0.009 Sum_probs=159.8
Q ss_pred cccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 34 EVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 34 h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
+.....+++|+|+|+ +++++..++.|.+|+..++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~------------ 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS------------ 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC------------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC------------
Confidence 455678999999998 7888888999999998754 1 1233333
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..+.+++++ +++.++++...++.|.+||..+++.........
T Consensus 69 ~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~------------------------------------ 110 (296)
T 3e5z_A 69 HHQNGHCLN--KQGHLIACSHGLRRLERQREPGGEWESIADSFE------------------------------------ 110 (296)
T ss_dssp SSEEEEEEC--TTCCEEEEETTTTEEEEECSTTCCEEEEECEET------------------------------------
T ss_pred CCcceeeEC--CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC------------------------------------
Confidence 458999998 567777776677899999987776543321100
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE----eC--------------CC
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----AD--------------DL 254 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~~--------------d~ 254 (461)
......+..++++|+|+++++ |. .+
T Consensus 111 -------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 111 -------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp -------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred -------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence 001123556777777777775 21 23
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECC-Cccc-ccccccccccccCCC
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEAPG 332 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~ 332 (461)
.|..++.. ..... +..+...+..++|+|++ +.+++.+.++.|.+||+. .+.. .. ...+...
T Consensus 154 ~l~~~~~~--g~~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~~---- 216 (296)
T 3e5z_A 154 WVFRLAPD--GTLSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTVE---- 216 (296)
T ss_dssp EEEEECTT--SCEEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECCS----
T ss_pred EEEEECCC--CCEEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeCC----
Confidence 45555443 22221 22344567899999999 777777788999999987 3332 10 1122111
Q ss_pred ccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE-ecCCC
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDGG 411 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~ 411 (461)
...+.+++++++|++.++. ++.|.+||.. ++.+..+..+.. + .+++| +|+++
T Consensus 217 --------~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~ 269 (296)
T 3e5z_A 217 --------PGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGR 269 (296)
T ss_dssp --------SSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSC
T ss_pred --------CCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCC
Confidence 1456789999999987777 8899999985 677777776655 3 38899 58899
Q ss_pred EEEEecCCCeEEEEecCCC
Q 012535 412 RVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 412 ~l~s~~~dg~i~iw~~~~~ 430 (461)
.|++++.+ .+.-++.++.
T Consensus 270 ~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 270 TLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEEEEETT-EEEEEECSCC
T ss_pred EEEEEcCC-eEEEEEcccc
Confidence 88888875 4445555544
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=6.2e-15 Score=135.99 Aligned_cols=243 Identities=12% Similarity=0.105 Sum_probs=150.1
Q ss_pred EEEeecCCCcEEEEEeC-CC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 118 IRWCQSANSALYLLSTN-DK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 118 v~~~p~~~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
.+|+ +||++|+.++. ++ .|.+||+.+++...+...+.. .+. ...|+|+|+.+
T Consensus 41 ~~~S--pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~--------~~~-------~~~~spdg~~l-------- 95 (388)
T 3pe7_A 41 KCFT--RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD--------NTF-------GGFLSPDDDAL-------- 95 (388)
T ss_dssp CCBC--TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB--------CSS-------SCEECTTSSEE--------
T ss_pred ccCC--CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC--------Ccc-------ceEEcCCCCEE--------
Confidence 6788 67888888876 67 488888888876655433211 111 45899999986
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeE--EeCCCCCEEEEe---------------------
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDGETFISA--------------------- 251 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~l~~~--------------------- 251 (461)
+.+..++.|.+|| +...+ ..... ..+...+... .+++++..++..
T Consensus 96 ----~~~~~~~~l~~~d-~~~g~------~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 96 ----FYVKDGRNLMRVD-LATLE------ENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp ----EEEETTTEEEEEE-TTTCC------EEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred ----EEEeCCCeEEEEE-CCCCc------ceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence 7777788999999 43321 11111 3333434333 348999988742
Q ss_pred --CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC-CCCCeEEEEecC------CeEEEEECCCcccccccc
Q 012535 252 --DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHS 322 (461)
Q Consensus 252 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~ 322 (461)
.+..|.+||+.+++ ... +..+...+..++|+| ++ +.|+....+ ..|.++|+..+..
T Consensus 164 ~~~~~~l~~~d~~~g~-~~~--------l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~----- 228 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGE-STV--------ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM----- 228 (388)
T ss_dssp GCCCEEEEEEETTTCC-EEE--------EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----
T ss_pred cCCcceEEEEECCCCc-eEE--------eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----
Confidence 34789999998654 222 233556789999999 98 778777653 3788888766542
Q ss_pred cccccccCCCccccccccccceeEEEEccCCCEEEEec--C-C---eEEEEEccCCCCCeeEEeeccCccccccccccCC
Q 012535 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-M---TLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d-~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (461)
..+..+.. ...+..+.|+|||+.|+..+ + + .|++||+.+ ++.. .+........ .. .
T Consensus 229 ~~l~~~~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~~~~-~~---~-- 290 (388)
T 3pe7_A 229 RKVKTHAE----------GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENR-QLTSMPACSH-LM---S-- 290 (388)
T ss_dssp EESCCCCT----------TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEE-EEEEECCEEE-EE---E--
T ss_pred EEeeeCCC----------CcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceE-EEEcCCCcee-ee---e--
Confidence 22222110 02477889999999876532 2 2 399999985 5432 2221111000 00 0
Q ss_pred CccceeeEEEecCCCEEEEe---------cCCCeEEEEecCCCCcc
Q 012535 397 SIFDKFECCLSGDGGRVATG---------SYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~---------~~dg~i~iw~~~~~~~~ 433 (461)
. ....+|+|||+.|+.. ..+..|++||+.+++..
T Consensus 291 ~---~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 291 N---YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp C---TTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred c---CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 0 0135799999988754 45679999999987643
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=2.5e-14 Score=128.57 Aligned_cols=257 Identities=12% Similarity=0.060 Sum_probs=165.0
Q ss_pred cceEEEEEeecCCCcEEEEEeCC------------------------CeEEEEEccCCceeEEeeeecCCCccCCCCCcc
Q 012535 113 EKINKIRWCQSANSALYLLSTND------------------------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (461)
..+.+|+++ ++|+++++...+ ++|.+||..++++....... .
T Consensus 24 ~~v~~va~d--~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----------~-- 89 (329)
T 3fvz_A 24 GQVSGVALD--SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN----------L-- 89 (329)
T ss_dssp SCEEEEEEC--TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT----------T--
T ss_pred CCceEEEEC--CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC----------c--
Confidence 559999999 567788777776 47999999888765433210 0
Q ss_pred ccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEe----eecccccceeeEEeCC-
Q 012535 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI----YAHAHDYHINSISNNS- 243 (461)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~i~~~~- 243 (461)
...|..++++++|... ++...++.|++|+ ...... ........ ...++...+..++++|
T Consensus 90 --~~~p~gia~d~~g~l~------------v~d~~~~~v~~~~-~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~ 153 (329)
T 3fvz_A 90 --FYLPHGLSIDTDGNYW------------VTDVALHQVFKLD-PHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPS 153 (329)
T ss_dssp --CSSEEEEEECTTSCEE------------EEETTTTEEEEEC-TTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTT
T ss_pred --cCCceEEEECCCCCEE------------EEECCCCEEEEEe-CCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCC
Confidence 0112278999999863 7777889999998 322110 11000000 0023445688999999
Q ss_pred CCCEEEEe--CCCeEEEEEccCCCCceeeeccCCC---CCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccc
Q 012535 244 DGETFISA--DDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (461)
Q Consensus 244 ~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 318 (461)
++.++++. .++.|++|+.. +... ..+..... ...++-..+..++++|++..++++...++.|++||..+++.
T Consensus 154 ~g~lyv~d~~~~~~I~~~~~~-g~~~-~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~- 230 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFSPS-GKFV-TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF- 230 (329)
T ss_dssp TCCEEEEECSSCCEEEEECTT-SCEE-EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-
T ss_pred CCeEEEEeCCCCCeEEEEcCC-CCEE-EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-
Confidence 78888886 38999999954 3322 22110000 00123345789999998327888888899999999986665
Q ss_pred cccccccccccCCCccccccccccceeEEEEccCCCEEEEe-------c-CCeEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-------D-YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-------~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
+..+.... +...+..++|+| +..+++. . ...|++||+.+ ++.+..+.......
T Consensus 231 ---~~~~~~~~----------~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~---- 291 (329)
T 3fvz_A 231 ---VREIKHAS----------FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHF---- 291 (329)
T ss_dssp ---EEEECCTT----------TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCC----
T ss_pred ---EEEEeccc----------cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCcc----
Confidence 33332211 114678899999 4333332 2 25899999986 77777664211110
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
.....++++|+|.++++...++.|++|++..
T Consensus 292 --------~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 292 --------DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --------SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred --------CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 1124899999998889999999999999874
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=3e-14 Score=128.47 Aligned_cols=281 Identities=8% Similarity=0.053 Sum_probs=171.8
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
..|.+++|++++..++..+.++.++.|.-. ....+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------------------PWLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------------------EEEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc--------------------------eeEEEeccC------------ccc
Confidence 457788899988877777778888888321 122344444 457
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
.+++|+ +++.+++++..++.|.+||.++++........ ...+. +++++++|+.+
T Consensus 48 ~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~~~-------~i~~~~dg~l~--------- 101 (333)
T 2dg1_A 48 EGLNFD--RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH--------KANPA-------AIKIHKDGRLF--------- 101 (333)
T ss_dssp EEEEEC--TTSCEEEEETTTCEEEEECTTTCCEEEEEECS--------SSSEE-------EEEECTTSCEE---------
T ss_pred cCcEEC--CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC--------CCCcc-------eEEECCCCcEE---------
Confidence 899998 56777778888999999999888765543211 11233 78899999863
Q ss_pred CccccccCC----CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeC-------CCeEEEEEccCC
Q 012535 196 DSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD-------DLRINLWNLEIS 264 (461)
Q Consensus 196 ~~~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-------d~~i~iwd~~~~ 264 (461)
++...+ +.|.+|| ..... ...... ...+...+.+++++|+++++++.. .+.|..+|..+.
T Consensus 102 ---v~~~~~~~~~~~i~~~d-~~~~~---~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 102 ---VCYLGDFKSTGGIFAAT-ENGDN---LQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp ---EEECTTSSSCCEEEEEC-TTSCS---CEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred ---EEeCCCCCCCceEEEEe-CCCCE---EEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC
Confidence 444444 5788888 32211 110100 012345788999999999888763 245555555422
Q ss_pred CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeE-EEEecCCeEEEEECCC-cccccccccccccccCCCcccccccccc
Q 012535 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
....+ ......+..++|+|++ +.| ++.+.++.|.+||+.. +... ..+.... ...+.++ .
T Consensus 173 -~~~~~--------~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~----~~~~~~~-~ 233 (333)
T 2dg1_A 173 -TVTPI--------IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATI----PYYFTGH-E 233 (333)
T ss_dssp -CEEEE--------EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEE----EEECCSS-S
T ss_pred -EEEEe--------ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceE----EEecCCC-C
Confidence 22211 1123457899999998 655 5555688999999864 2221 1110000 0000011 3
Q ss_pred ceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC
Q 012535 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (461)
Q Consensus 343 ~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (461)
.+..++++++|+++++.. ++.|.+||.. ++.+..+..+..... ....+.+++|++|++.|+.++.+
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~g---------~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCccc---------cccCcceEEECCCCCEEEEEeCc
Confidence 578899999999877764 5899999984 566666654432000 00011389999998777665554
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.64 E-value=1.9e-14 Score=143.96 Aligned_cols=253 Identities=8% Similarity=0.019 Sum_probs=150.5
Q ss_pred eEEEEEcCCCCEEEEeecC---------CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 38 ISAIEFDKSGDHLATGDRG---------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
...++|||||++||.++.+ +.+.+||+.+++.. .+..|.
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~------------------------~l~~~~-------- 111 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------------TEERIP-------- 111 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------------CSSCCC--------
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE------------------------EcccCC--------
Confidence 3458999999999999876 56779999887532 344555
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCcc-CCCCCcccc--ccccCcceeecCCCc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA-AGNGPIFGS--HVSAIPKSYMANGGC 185 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~--~~~~~~~~~~~~g~~ 185 (461)
..+...+|| +||+.|+.+ .|+.|.+|++.+++..++.......... -....+... ......++|+|||+.
T Consensus 112 ----~~~~~~~~S--PdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~ 184 (740)
T 4a5s_A 112 ----NNTQWVTWS--PVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF 184 (740)
T ss_dssp ----TTEEEEEEC--SSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred ----CcceeeEEC--CCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCE
Confidence 568999999 568888887 5689999999888755432211100000 000000000 001115789999998
Q ss_pred ccccccCCCCCccccc-cCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccC-
Q 012535 186 GERNFGCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEI- 263 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~- 263 (461)
+ +.. ..++.+.+|+ +...... ..+...+..+.+.+.|... ....|.+||+.+
T Consensus 185 l------------a~~~~d~~~v~~~~-~~~~~~~----------~~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 185 L------------AYAQFNDTEVPLIE-YSFYSDE----------SLQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSL 238 (740)
T ss_dssp E------------EEEEEECTTCCEEE-EEECCST----------TCSSCEEEEEECCBTTSCC---CEEEEEEEETTSC
T ss_pred E------------EEEEEcccCCceEE-EEeecCC----------CCCCCcceeecCCCCcCcC---CeeEEEEEECCCC
Confidence 6 444 3455588887 3211110 0133445566676665321 234789999986
Q ss_pred --CC--CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec----CCeEEEEECCCccc---cccccccc--ccccC
Q 012535 264 --SN--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSAL---CDTHSKLF--EEQEA 330 (461)
Q Consensus 264 --~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~~~~--~~~~~ 330 (461)
++ ....+. .+..+.++...+..++|+|+| ++++.... +..|.+||+.+++. +.. +..+ +.+.
T Consensus 239 ~~~~~~~~~~l~--~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~-~~~l~~~~~~- 313 (740)
T 4a5s_A 239 SSVTNATSIQIT--APASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLV-ARQHIEMSTT- 313 (740)
T ss_dssp CSSSCCCEEEEC--CCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECG-GGCEEEECSS-
T ss_pred CCCCcceEEEec--CCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeE-EEEeeeccCC-
Confidence 53 222210 001112477889999999999 76665543 33799999988761 100 1111 1121
Q ss_pred CCccccccccccce-----eEEEEccCCCEEE-Eec--C--CeEEEEEccC
Q 012535 331 PGTRSFFTEIIASI-----SDIKFARNGRHIL-SRD--Y--MTLKLWDINM 371 (461)
Q Consensus 331 ~~~~~~~~~h~~~v-----~~l~~s~~g~~l~-s~~--d--~~i~vwd~~~ 371 (461)
..| ....|+|||+.|+ ..+ + ..|++||+..
T Consensus 314 -----------~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 314 -----------GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp -----------SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred -----------ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 333 3678999999877 543 2 5788888873
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=4.1e-14 Score=140.14 Aligned_cols=166 Identities=9% Similarity=0.008 Sum_probs=103.2
Q ss_pred cceEEEEEeecCCCcEEEEEeCC----------CeEEEEEccC------CceeEEe-eeecCCCccCCCCCccccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTND----------KTIKLWKVQE------KKVKKVF-DWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d----------~~i~vw~~~~------~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
..+..++|+ +||+.|++++.+ ..|.+|++.+ ++...+. ... ..+.
T Consensus 130 ~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~------- 191 (662)
T 3azo_A 130 LRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH---------RFVT------- 191 (662)
T ss_dssp EEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS---------SEEC-------
T ss_pred ccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC---------Cccc-------
Confidence 558899999 678899988876 5899999988 6554332 111 1122
Q ss_pred cceeecCCCcccccccCCCCCccccccCC--------CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCE
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGV--------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (461)
.++|+|||+.+ +..+.+ ..|.+|| +.. ......... +..++...+..++|+|+|++
T Consensus 192 ~~~~SpDG~~l------------a~~~~~~~~~~~~~~~i~~~d-~~~--~g~~~~~~~-l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 192 GPRLSPDGRQA------------VWLAWDHPRMPWEGTELKTAR-VTE--DGRFADTRT-LLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp CCEECTTSSEE------------EEEEECTTCCTTTCEEEEEEE-ECT--TSCEEEEEE-EEEETTBCEEEEEECTTSCE
T ss_pred CceECCCCCEE------------EEEECCCCCCCCCCcEEEEEE-ECC--CCcccccEE-eCCCCCceEcceEECCCCeE
Confidence 67999999986 444432 4788888 431 110112222 22455678999999999997
Q ss_pred EEEe-CCC--eEEEEEccCCCCceeeeccCCCCCCC--CCcceEEEEEeCCCCCeEEEEecCCeEEEE--ECCCcc
Q 012535 248 FISA-DDL--RINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLI--DMRQSA 316 (461)
Q Consensus 248 l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw--d~~~~~ 316 (461)
++++ .++ .|.+||+.+++ ...+..... .... -.-.+..++|+|++ ++++++.. +.++|| |+..+.
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGA-ATQLCRREE-EFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCC-EEESSCCSS-BSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE
T ss_pred EEEECCCCCeEEEEEECCCCc-eeecccccc-cccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc
Confidence 7777 577 56666654332 222211000 0000 00114678999998 89999888 999999 555444
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=1.3e-12 Score=124.86 Aligned_cols=316 Identities=12% Similarity=0.013 Sum_probs=186.3
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcC--CCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
....+..+.|+|||++|++++.|+.|.+||+. +.+ ....+...
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----------------------~v~~i~~G------------ 239 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----------------------TVAEIKIG------------ 239 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----------------------EEEEEECC------------
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----------------------EeEEEecC------------
Confidence 34467799999999999999999999999985 332 12222222
Q ss_pred ccceEEEEEee--cCCCcEEEEEe-CCCeEEEEEccCCceeEEeeeecCCCc---cCCCCCccccccccCcceeecCCCc
Q 012535 112 EEKINKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEK---AAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 112 ~~~v~~v~~~p--~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
.....++|++ .+||++++++. .+++|.++|..+.+............. ......+. .+..++++..
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva-------~i~~s~~~~~ 311 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA-------AILASHYRPE 311 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE-------EEEECSSSSE
T ss_pred -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE-------EEEEcCCCCE
Confidence 2257889982 12677877775 669999999988877766553221000 00000111 3444554443
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~ 263 (461)
. ++.....|.|.++| ...... .. ... ........++.|+|++++|+++ .++.|.++|+.+
T Consensus 312 ~-----------vv~~~~~g~v~~vd-~~~~~~---~~-v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 312 F-----------IVNVKETGKILLVD-YTDLNN---LK-TTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp E-----------EEEETTTTEEEEEE-TTCSSE---EE-EEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred E-----------EEEecCCCeEEEEe-cCCCcc---ce-eee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2 45566778888888 322211 00 111 1223456688999999998776 589999999996
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cCCeEEEEECCCcccc---cccccccccccCCCccccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALC---DTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 339 (461)
.+.. ..+.+- ....|.+.-..+ ++|++..+.+++. .++.|.++|....... .+.+.++....
T Consensus 374 ~kl~-~~i~vg--g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---------- 439 (567)
T 1qks_A 374 GKLV-AIEDTG--GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---------- 439 (567)
T ss_dssp TEEE-EEEECS--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC----------
T ss_pred CcEE-EEEecc--CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC----------
Confidence 6433 222210 112243222222 6887524555554 4689999999873210 11133333321
Q ss_pred cccceeEEEEccCCCEEEEec--------CCeEEEEEccCC-----CCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 340 IIASISDIKFARNGRHILSRD--------YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~~--------d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
..-..+..+|++++|.+.. .++|.++|+.+. .+.+..+...+ + ..+ ...-..+..+.|
T Consensus 440 --~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~-~----~~~--~~~~~~~~~~~~ 510 (567)
T 1qks_A 440 --GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE-W----AGI--TEGQPRVVQGEF 510 (567)
T ss_dssp --SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH-H----HTC--CSSCCEEEEEEE
T ss_pred --CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccc-c----ccc--CCCCcceEeeeE
Confidence 2224477899999999854 259999999863 12223332100 0 000 000112358999
Q ss_pred ecCCCEEEEec-----CCCeEEEEecCCCCcc
Q 012535 407 SGDGGRVATGS-----YSNLFRVFGCSEGSAE 433 (461)
Q Consensus 407 s~~~~~l~s~~-----~dg~i~iw~~~~~~~~ 433 (461)
+++|+.+..+. .++.|.|+|.++++..
T Consensus 511 ~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 511 NKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp CTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 99999776652 3799999999998654
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=3.5e-14 Score=141.09 Aligned_cols=250 Identities=10% Similarity=0.006 Sum_probs=150.8
Q ss_pred cccceEEEEEcCCCCEEE-----EeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 34 EVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~-----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
|...+.+++|||||++|| .|+.+..|++||+.+++.. ....+..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------~~~~~~~---------- 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------KVDVIEG---------- 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------SSCCBSC----------
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------CCcccCc----------
Confidence 555799999999999999 4445578999999987521 0001111
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCe-------------EEEEEccCCceeEEeeeecCCCccCCCCCccccccccC
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
.....++|+ +||+.|+.++.|.. |++|++.++.....
T Consensus 168 ----~~~~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~------------------------ 217 (695)
T 2bkl_A 168 ----GKYATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT------------------------ 217 (695)
T ss_dssp ----CTTCCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE------------------------
T ss_pred ----ccccceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce------------------------
Confidence 112678999 67889999887765 66666554331100
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
.++. ...+...+..+.|+|+|++|+.+ .++
T Consensus 218 --------------------------------lv~~-----------------~~~~~~~~~~~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 218 --------------------------------VVHE-----------------RTGDPTTFLQSDLSRDGKYLFVYILRG 248 (695)
T ss_dssp --------------------------------EEEC-----------------CCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred --------------------------------EEEe-----------------cCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence 0000 12344567788999999988876 444
Q ss_pred ----eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe---cCCeEEEEECCCccccccccccccc
Q 012535 255 ----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 255 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
.|.+|+..++ .... +..+...+....+ +++ .+++.+. .++.|.+||+.++.... ...+..
T Consensus 249 ~~~~~l~~~~~~~~-~~~~--------l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~ 315 (695)
T 2bkl_A 249 WSENDVYWKRPGEK-DFRL--------LVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS--WKEIVP 315 (695)
T ss_dssp TTEEEEEEECTTCS-SCEE--------EEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG--CEEEEC
T ss_pred CCceEEEEEcCCCC-ceEE--------eecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC--CeEEec
Confidence 5666654322 2222 2234445566666 677 5444433 25889999997764200 111211
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec-cCccccccccccCCCccceeeEE
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECC 405 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 405 (461)
+.. ...+..++|+ ++.++++.. ++..+||.+...++....+..+ ...+ ..++
T Consensus 316 ~~~----------~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~ 369 (695)
T 2bkl_A 316 EDS----------SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLM 369 (695)
T ss_dssp CCS----------SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCB
T ss_pred CCC----------CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEee
Confidence 110 1457888888 666777655 6777777665335545555443 2222 3677
Q ss_pred EecCCCEEE----EecCCCeEEEEecCCCCc
Q 012535 406 LSGDGGRVA----TGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 406 ~s~~~~~l~----s~~~dg~i~iw~~~~~~~ 432 (461)
++|+++.|+ +....+.|++||+.+++.
T Consensus 370 ~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 370 GLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp SCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred cCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 889988776 334568999999998764
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=1.2e-13 Score=125.31 Aligned_cols=273 Identities=9% Similarity=0.012 Sum_probs=160.0
Q ss_pred ccccccceEEEEEcCCCCEEEEee---------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCc
Q 012535 31 EVQEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEP 101 (461)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 101 (461)
++.....+...++ ||+++|... .++.|.+|++.+++.. .+ ..
T Consensus 10 ~l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------------------~l--~~- 60 (347)
T 2gop_A 10 TFAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------------------------FI--EN- 60 (347)
T ss_dssp CCCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------------------------EE--ES-
T ss_pred cceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------------------------Ec--cc-
Confidence 4445567888888 899888753 2567899998775421 11 22
Q ss_pred chhhccccccccceEEEEEeecCCCcEEEEEeCC---C--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTND---K--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 102 ~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d---~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
+..++|+ +||++|+.++.+ + .|.+|++.+++...+..... +. .
T Consensus 61 -------------~~~~~~S--pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----------~~-------~ 108 (347)
T 2gop_A 61 -------------ATMPRIS--PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN----------IR-------S 108 (347)
T ss_dssp -------------CEEEEEC--TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE----------EE-------E
T ss_pred -------------CCCeEEC--CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC----------cc-------c
Confidence 7889999 668888887643 3 47777888877655543321 22 6
Q ss_pred ceeecCCCcccccccCCCC--------Cccc-------cccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEe
Q 012535 177 KSYMANGGCGERNFGCASN--------DSSF-------PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241 (461)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~~--------~~~~-------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 241 (461)
++|+|+|+.+......... ...+ .......|.+|+ +.. .+..+.+ .. . .+..++|
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d-~~~------~~~~~~l-~~-~-~~~~~~~ 178 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD-TES------EEVIEEF-EK-P-RFSSGIW 178 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE-TTT------TEEEEEE-EE-E-TTCEEEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE-CCC------CeEEeee-cC-C-CcccccC
Confidence 7999999976221110000 0000 001135677777 322 1121122 22 2 6788999
Q ss_pred CCCCCEEEEe-CC------C-eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC--------C
Q 012535 242 NSDGETFISA-DD------L-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------G 305 (461)
Q Consensus 242 ~~~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------g 305 (461)
+|++ +++++ .+ . ...+|.++ ...... +..+ ..+..+ +|+| +.|+.++.+ .
T Consensus 179 spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~--------l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~ 244 (347)
T 2gop_A 179 HRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEK--------MFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHN 244 (347)
T ss_dssp ETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEE--------EEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSC
T ss_pred CCCe-EEEEEecccccccccccccEEEeC-CCceEE--------eccC-cceeeE--CCCC-CEEEEEEccccCCccccc
Confidence 9999 77766 33 2 45566555 333322 2223 344444 9999 777776644 3
Q ss_pred eEEEEECCCcccccccccccccccCCCccccccccccceeE-EEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeecc
Q 012535 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
.|.+|| +++. ......+ ...+.. +.|+ || ++++++ ++.++|| +. .++. ..+..+.
T Consensus 245 ~l~~~d--~~~~----~~l~~~~------------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~-~~~~~~~ 301 (347)
T 2gop_A 245 KLYIYD--GKEV----MGILDEV------------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEI-KPIAKGR 301 (347)
T ss_dssp EEEEEC--SSCE----EESSTTC------------CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSE-EEEECSS
T ss_pred eEEEEC--CCce----EeccccC------------CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCce-EEEecCC
Confidence 688888 4332 1112222 256775 8999 88 777765 5899999 87 3554 3333333
Q ss_pred CccccccccccCCCccceeeEEEecCCCEEEEecCCCeE-EEEecC
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF-RVFGCS 428 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i-~iw~~~ 428 (461)
..+ .+++|+| .++++++.++.. .||.+.
T Consensus 302 ~~v---------------~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 302 HWI---------------MGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SEE---------------EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CeE---------------EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 332 4889998 677777766654 777776
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=5.1e-13 Score=133.10 Aligned_cols=248 Identities=11% Similarity=0.049 Sum_probs=154.4
Q ss_pred cceEEEEEeecCCCcEEEEEeCCC-----eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
..+..++|| +||++|+.+..++ .|++||+.+++.......... +. .++|+|||+.+
T Consensus 125 ~~~~~~~~S--PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~---------~~-------~~~wspDg~~l- 185 (710)
T 2xdw_A 125 VALRGYAFS--EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK---------FS-------CMAWTHDGKGM- 185 (710)
T ss_dssp EEEEEEEEC--TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC---------SC-------CEEECTTSSEE-
T ss_pred EEEEEEEEC--CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc---------cc-------eEEEEeCCCEE-
Confidence 358889999 6788888775433 899999999887654222211 11 67999999986
Q ss_pred ccccCCCCCccccccCCCc----------------EEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe
Q 012535 188 RNFGCASNDSSFPPGGVSS----------------LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~----------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (461)
+.+..++. |.+|+ +..... ....... ...|...+..+.|+|+|++|+.+
T Consensus 186 -----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-l~t~~~--~~~~v~~-~~~~~~~~~~~~~SpDg~~l~~~ 250 (710)
T 2xdw_A 186 -----------FYNAYPQQDGKSDGTETSTNLHQKLYYHV-LGTDQS--EDILCAE-FPDEPKWMGGAELSDDGRYVLLS 250 (710)
T ss_dssp -----------EEEECCCCSSCCSSSCCCCCCCCEEEEEE-TTSCGG--GCEEEEC-CTTCTTCEEEEEECTTSCEEEEE
T ss_pred -----------EEEEECCccccccccccccCCCCEEEEEE-CCCCcc--cceEEec-cCCCCeEEEEEEEcCCCCEEEEE
Confidence 44444433 88888 422111 0011111 12345557789999999998875
Q ss_pred -C-----CCeEEEEEccC------CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC----CeEEEEECCCc
Q 012535 252 -D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQS 315 (461)
Q Consensus 252 -~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~iwd~~~~ 315 (461)
. +..|.+||+.+ +..... .+..+...+.. .|+|+| ..|+..+.+ +.|.+||+.++
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEccCCCccEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCC
Confidence 3 57899999985 321222 12234444444 488888 666655543 36999999876
Q ss_pred ccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CC--eEEEEEccCCCCCeeEEeeccCcccccccc
Q 012535 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM--TLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (461)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (461)
... ....+..+.. ...+..+.|++++.+++++. ++ .|++||+.. ++.+..+..+...+
T Consensus 322 ~~~--~~~~l~~~~~----------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v------ 382 (710)
T 2xdw_A 322 EES--KWKVLVPEHE----------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV------ 382 (710)
T ss_dssp CGG--GCEEEECCCS----------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE------
T ss_pred Ccc--cceeccCCCC----------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE------
Confidence 310 0122222210 02578899987777777765 55 566777754 66666776654332
Q ss_pred ccCCCccceeeEEEecCCCEEEEe----cCCCeEEEEecCCCC
Q 012535 393 YENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGCSEGS 431 (461)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~i~iw~~~~~~ 431 (461)
..++++|+++.|+.. ...+.|++||+.+++
T Consensus 383 ---------~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 ---------VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---------EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---------EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 378889998766532 346899999998876
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=5.7e-13 Score=116.13 Aligned_cols=239 Identities=8% Similarity=0.025 Sum_probs=154.5
Q ss_pred ceEEEEEcCCCCEEE-EeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
...+++++++|++++ +...++.|.+|+..+.... . ....+. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------~--~~~~~~------------~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------V--LPFNGL------------YQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------E--CCCCSC------------CSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------e--EeeCCc------------CCc
Confidence 678999999999777 5467889999986543311 0 001111 336
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
.++++. +++.++++.. ++.|.+|+..++..... .
T Consensus 70 ~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~------------------------------------------ 103 (270)
T 1rwi_B 70 QGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQTVL-P------------------------------------------ 103 (270)
T ss_dssp CCEEEC--TTCCEEEEET-TTEEEEECTTCSCCEEC-C------------------------------------------
T ss_pred ceeEEC--CCCCEEEEcC-CCEEEEEeCCCceEeee-e------------------------------------------
Confidence 788888 4566555545 88888888665432110 0
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccC
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (461)
......+..++++++++++++. .++.|.+|+..+......
T Consensus 104 ----------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~----- 144 (270)
T 1rwi_B 104 ----------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL----- 144 (270)
T ss_dssp ----------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----
T ss_pred ----------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----
Confidence 0111346788999999877776 688999997653322211
Q ss_pred CCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCC
Q 012535 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (461)
Q Consensus 275 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~ 354 (461)
.......+..++++|++ +++++...++.|.+||....... ...... ...+.+++++++|.
T Consensus 145 ---~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~------------~~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 145 ---PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV----VLPFTD------------ITAPWGIAVDEAGT 204 (270)
T ss_dssp ---CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEE----ECCCSS------------CCSEEEEEECTTCC
T ss_pred ---ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceE----eecccC------------CCCceEEEECCCCC
Confidence 11223457889999998 77777777899999998765431 111111 14578999999997
Q ss_pred EEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 355 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 355 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
++++.. ++.|.+||... .. ........ ...+..++++++|+++++...++.|+++++...+
T Consensus 205 l~v~~~~~~~v~~~~~~~-~~-~~~~~~~~--------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGS-TT-STVLPFTG--------------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEETTTSCEEEECTTC-SC-CEECCCCS--------------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCcEEEEcCCC-Cc-ceeeccCC--------------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 777654 58999999864 22 22211110 0112489999999999999999999999988654
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=6.1e-12 Score=111.25 Aligned_cols=283 Identities=7% Similarity=-0.003 Sum_probs=177.9
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
+...+.+++++++|+++++...++.|.+||.. ++.. .. .+..+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~~-~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------EY-PLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------EE-ECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------Ee-cCCccc------------C
Confidence 34679999999999987776668899999976 3210 00 011122 4
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.+.++++. +++.++++...++.|..|+.. ++.... .... ....+. .+++.++|...
T Consensus 58 ~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~~~------~~~~~~-------~i~~~~~g~l~------- 113 (299)
T 2z2n_A 58 KVMCLTIS--SDGEVWFTENAANKIGRITKK-GIIKEY-TLPN------PDSAPY-------GITEGPNGDIW------- 113 (299)
T ss_dssp CEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEE-ECSS------TTCCEE-------EEEECTTSCEE-------
T ss_pred ceeeEEEC--CCCCEEEeCCCCCeEEEECCC-CcEEEE-eCCC------cCCCce-------eeEECCCCCEE-------
Confidence 48899998 567677776778899999976 333222 1110 011122 67788888753
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeec
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (461)
++...++.|..|| . .. .............+..++++++++++++. .++.|..||. +++ ....
T Consensus 114 -----v~~~~~~~i~~~d-~---~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~-- 176 (299)
T 2z2n_A 114 -----FTEMNGNRIGRIT-D---DG----KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD-ITEF-- 176 (299)
T ss_dssp -----EEETTTTEEEEEC-T---TC----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-EEEE--
T ss_pred -----EEecCCceEEEEC-C---CC----CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc-EEEe--
Confidence 5555678888887 2 11 11111112344568899999999888877 6789999998 333 2211
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
........+..+++++++ .+.++...++.|.+||. ++.. ..+... .+...+.+++++++
T Consensus 177 ----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~----------~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 177 ----KIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEI-----TEFKIP----------TPNARPHAITAGAG 235 (299)
T ss_dssp ----ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-----EEEECS----------STTCCEEEEEECST
T ss_pred ----eCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcE-----EEEECC----------CCCCCceeEEECCC
Confidence 122234567899999998 77776667889999998 5542 111111 01146889999999
Q ss_pred CCEEEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 353 g~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
|++.++. .++.|..||.. +. +..+...... ..+.++++ +++.++++.+ .+.|..++.++++
T Consensus 236 g~l~v~~~~~~~i~~~d~~--g~-~~~~~~~~~~-------------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTSN--NI-IEEYPIQIKS-------------AEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp TCEEEEETTTTEEEEEETT--TE-EEEEECSSSS-------------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CCEEEeccCCceEEEECCC--Cc-eEEEeCCCCC-------------CccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 9877765 35899999983 32 3333211110 11248888 8888777765 5677788877653
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=9.5e-13 Score=118.08 Aligned_cols=237 Identities=7% Similarity=-0.003 Sum_probs=151.4
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
...+.+. ++..+++...++.|.+||..+++......... .+. .++++++++.
T Consensus 46 ~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~---------~p~-------~i~~~~~g~l--------- 97 (328)
T 3dsm_A 46 AQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRITGFT---------SPR-------YIHFLSDEKA--------- 97 (328)
T ss_dssp EEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEEECCS---------SEE-------EEEEEETTEE---------
T ss_pred ceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEcCCCC---------CCc-------EEEEeCCCeE---------
Confidence 5777775 24566666778999999999988766553211 122 6788888854
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeeccc----ccceeeEEeCCCCCEEEEe-C-CCeEEEEEccCCCCce
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSF 268 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~ 268 (461)
+++...++.|.+|| .... +....+..+. ...+..+++ .++.++++. . ++.|.++|+.+.+...
T Consensus 98 ---yv~~~~~~~v~~iD-~~t~------~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 98 ---YVTQIWDYRIFIIN-PKTY------EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp ---EEEEBSCSEEEEEE-TTTT------EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred ---EEEECCCCeEEEEE-CCCC------eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 24443789999999 3221 1222211111 125567777 455555555 3 8999999998655433
Q ss_pred eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC----------CeEEEEECCCcccccccccccccccCCCcccccc
Q 012535 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (461)
.+ . .......++++|+| ++++++..+ +.|.++|..+++. ...+....
T Consensus 167 ~i--------~-~g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v----~~~~~~~~--------- 223 (328)
T 3dsm_A 167 EL--------T-IGIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTV----EKQFKFKL--------- 223 (328)
T ss_dssp EE--------E-CSSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE----EEEEECCT---------
T ss_pred EE--------E-cCCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeE----EEEEecCC---------
Confidence 22 1 12345688999998 776666554 7899999988764 22332211
Q ss_pred ccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeE--EeeccCccccccccccCCCccceeeEEEec-CCCEEEE
Q 012535 339 EIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVAT 415 (461)
Q Consensus 339 ~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s 415 (461)
......++|+|++++|++++. .|.+||..+ ++.... +..+... ...++++| ++.++++
T Consensus 224 --g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~~~~---------------p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 224 --GDWPSEVQLNGTRDTLYWINN-DIWRMPVEA-DRVPVRPFLEFRDTK---------------YYGLTVNPNNGEVYVA 284 (328)
T ss_dssp --TCCCEEEEECTTSCEEEEESS-SEEEEETTC-SSCCSSCSBCCCSSC---------------EEEEEECTTTCCEEEE
T ss_pred --CCCceeEEEecCCCEEEEEcc-EEEEEECCC-CceeeeeeecCCCCc---------------eEEEEEcCCCCeEEEE
Confidence 024789999999999988765 899999975 443211 1111111 14899999 5666666
Q ss_pred e----cCCCeEEEEecCCCCcc
Q 012535 416 G----SYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 416 ~----~~dg~i~iw~~~~~~~~ 433 (461)
. ..++.|.+||.. ++..
T Consensus 285 ~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp ECTTSSSEEEEEEECTT-CCEE
T ss_pred cccccccCCEEEEECCC-CCEE
Confidence 6 678999999998 6554
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=2e-12 Score=116.46 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=146.9
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.+...+.+++|+++|++++++..++.|.+||..+++.. .....+.
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-----------------------~~~~~~~------------ 86 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-----------------------RPFVSHK------------ 86 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----------------------EEEECSS------------
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-----------------------EEeeCCC------------
Confidence 35566789999999998888888999999998765421 1111233
Q ss_pred cceEEEEEeecCCCcEEEEEeCC----CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 113 EKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..+.+++|+ +++.++++...+ +.|.+||.+++.......... ....+. .++++|+|+..
T Consensus 87 ~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~-------~i~~d~~g~l~-- 149 (333)
T 2dg1_A 87 ANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS------TAYCID-------DMVFDSKGGFY-- 149 (333)
T ss_dssp SSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS------SCCCEE-------EEEECTTSCEE--
T ss_pred CCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc------cCCccc-------ceEECCCCCEE--
Confidence 458999998 567677776666 689999998877553322110 011222 67888988763
Q ss_pred cccCCCCCccccccC------CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEE
Q 012535 189 NFGCASNDSSFPPGG------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 260 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd 260 (461)
++... .+.|..++ .+.... .. + ......+..++|+|+++.|+.+ .++.|.+||
T Consensus 150 ----------v~~~~~~~~~~~~~l~~~~----~~~~~~---~~-~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 150 ----------FTDFRGYSTNPLGGVYYVS----PDFRTV---TP-I-IQNISVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp ----------EEECCCBTTBCCEEEEEEC----TTSCCE---EE-E-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ----------EEeccccccCCCceEEEEe----CCCCEE---EE-e-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 33322 23444444 111111 11 1 1222457889999999866554 588999999
Q ss_pred ccCCCCceeeeccC-CCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccc
Q 012535 261 LEISNQSFNIVDVK-PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (461)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
++........+... ...+.++ ..+..+++++++ +++++...++.|.+||.. ++. +..+..+.. ..+
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~----~~~~~~~~~------~~g 277 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYP----IGQILIPGR------DEG 277 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCE----EEEEECTTG------GGT
T ss_pred ecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCE----EEEEEcCCC------ccc
Confidence 96432221110000 0011222 467889999998 777777778999999985 332 233322210 011
Q ss_pred cccceeEEEEccCCCEEEEe
Q 012535 340 IIASISDIKFARNGRHILSR 359 (461)
Q Consensus 340 h~~~v~~l~~s~~g~~l~s~ 359 (461)
|...+.+++|+||++.|+.+
T Consensus 278 ~~~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 278 HMLRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp CSCBCCEEEECTTSCEEEEE
T ss_pred cccCcceEEECCCCCEEEEE
Confidence 12258899999998776653
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=2.6e-12 Score=122.77 Aligned_cols=281 Identities=10% Similarity=0.042 Sum_probs=177.5
Q ss_pred CCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecC
Q 012535 45 KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA 124 (461)
Q Consensus 45 ~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~ 124 (461)
+.+.++++...+++|.++|..+++. +..+... ..+..+.|+ +
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v-----------------------~~~i~~g-------------~~p~~v~~S--p 206 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRLS--A 206 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEEC--T
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE-----------------------EEEEeCC-------------CCccceEEC--C
Confidence 4455677777889999999987753 2223222 236789999 6
Q ss_pred CCcEEEEEeCCCeEEEEEcc--CCceeEEeeeecCCCccCCCCCccccccccCcceee----cCCCcccccccCCCCCcc
Q 012535 125 NSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM----ANGGCGERNFGCASNDSS 198 (461)
Q Consensus 125 ~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~ 198 (461)
|++++++++.|+.|.+||+. +.+.......... +..++++ |+|+++ +
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~----------------P~~ia~s~~~~pDGk~l-----------~ 259 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE----------------ARSIETSKMEGWEDKYA-----------I 259 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE----------------EEEEEECCSTTCTTTEE-----------E
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC----------------CceeEEccccCCCCCEE-----------E
Confidence 78899999999999999995 5555443332111 1167899 699986 4
Q ss_pred ccccCCCcEEeeeeecccCccccceeeEee---ec---cc-ccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCcee
Q 012535 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIY---AH---AH-DYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~---~~-~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 269 (461)
++...++.+.++| ....+. ....... .. .| ...+..+..++++..++.. .+|.|.++|....+.. .
T Consensus 260 v~n~~~~~v~ViD-~~t~~~---~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~-~ 334 (567)
T 1qks_A 260 AGAYWPPQYVIMD-GETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-K 334 (567)
T ss_dssp EEEEETTEEEEEE-TTTCCE---EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-E
T ss_pred EEEccCCeEEEEE-CCCCcE---EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc-e
Confidence 5556679999998 332221 1111110 00 02 1257788888887766665 6899999998754322 1
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEE-EecCCeEEEEECCCccccccccccccc-ccCCCccccccccccceeEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIASISDI 347 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l 347 (461)
+. .+ ........+.|+|++ ++|++ ...++.|.++|+.++++. ..+.. ...+ |.+.-..+
T Consensus 335 v~-----~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~----~~i~vgg~~P--------hpg~g~~~ 395 (567)
T 1qks_A 335 TT-----EI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLV----AIEDTGGQTP--------HPGRGANF 395 (567)
T ss_dssp EE-----EE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSSSB--------CCTTCEEE
T ss_pred ee-----ee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEE----EEEeccCcCC--------CCccceee
Confidence 11 11 123456788999999 66554 456899999999988752 22222 1111 11211122
Q ss_pred EEccCCC-EEEEec--CCeEEEEEccCC------CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC
Q 012535 348 KFARNGR-HILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (461)
Q Consensus 348 ~~s~~g~-~l~s~~--d~~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (461)
++|++. ..+++. ++.|.++|.... .+.++++....... ..+..+|++++|.+...
T Consensus 396 -~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~---------------~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 396 -VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS---------------LFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCSEEEEECT
T ss_pred -ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCC---------------EEEEeCCCCCeEEEecC
Confidence 578754 444553 589999999752 23455665443211 25889999998887652
Q ss_pred -------CCeEEEEecCCC
Q 012535 419 -------SNLFRVFGCSEG 430 (461)
Q Consensus 419 -------dg~i~iw~~~~~ 430 (461)
.+.|.++|+.+.
T Consensus 460 ~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGC
T ss_pred CCCCcccCceEEEEECCcc
Confidence 469999999876
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=2.1e-13 Score=126.01 Aligned_cols=238 Identities=10% Similarity=0.050 Sum_probs=147.1
Q ss_pred eEEEEEeecCCCcEEEEEeCC---CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 115 INKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
+..++|+ +||++|+.+... ..|.+|++.+++...+..... ... ....|+|+|+.+
T Consensus 38 ~~~~~~S--pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~---------~~~------~~~~~spdg~~l----- 95 (396)
T 3c5m_A 38 FYQKCFT--QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG---------DNT------FGGFISTDERAF----- 95 (396)
T ss_dssp TTSCCBC--TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC---------BCT------TTCEECTTSSEE-----
T ss_pred eecCcCC--CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC---------Ccc------ccceECCCCCEE-----
Confidence 5677888 668888776533 478888988877544322111 000 036899999985
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceee-------------------EEeCCCCCEEEEe-
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-------------------ISNNSDGETFISA- 251 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~~- 251 (461)
+....++.|.+|+ +...+. .... ..+...... +.|+|+++.++..
T Consensus 96 -------~~~~~~~~l~~~d-~~~~~~------~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 96 -------FYVKNELNLMKVD-LETLEE------QVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp -------EEEETTTEEEEEE-TTTCCE------EEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred -------EEEEcCCcEEEEE-CCCCCc------EEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence 6777777899988 432211 1111 112121111 4578888776542
Q ss_pred -----CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC-CCCCeEEEEecC------CeEEEEECCCccccc
Q 012535 252 -----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCD 319 (461)
Q Consensus 252 -----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~d------g~i~iwd~~~~~~~~ 319 (461)
.+..|.+||+.+++. .. +..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..+..
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~-~~--------~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-- 228 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGEL-EV--------IHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-- 228 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCE-EE--------EEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCC--
T ss_pred eccCCCcceEEEEECCCCcE-Ee--------eccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCce--
Confidence 456899999885442 22 223556788999999 77 666665543 3688888866542
Q ss_pred ccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C-----CeEEEEEccCCCCCeeEEeeccCccccccccc
Q 012535 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (461)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (461)
..+..+.. ...+..+.|+|||++|+.++ + +.|++||+.+ ++.. .+.....
T Consensus 229 ---~~l~~~~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~--------- 284 (396)
T 3c5m_A 229 ---RKIKEHAE----------GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENE-EVMVMPP--------- 284 (396)
T ss_dssp ---EESSCCCT----------TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEE-EEEECCS---------
T ss_pred ---eEeeccCC----------CccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeE-EeeeCCC---------
Confidence 11111100 03578899999999877642 2 3499999975 4432 2222111
Q ss_pred cCCCccceeeEEEec-CCCEEEEec----------------CCCeEEEEecCCCCcc
Q 012535 394 ENDSIFDKFECCLSG-DGGRVATGS----------------YSNLFRVFGCSEGSAE 433 (461)
Q Consensus 394 ~~~~~~~v~~~~~s~-~~~~l~s~~----------------~dg~i~iw~~~~~~~~ 433 (461)
..+.|+| ||++|++++ .++.|++||+.+++..
T Consensus 285 --------~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 285 --------CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp --------EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred --------CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence 1378999 999888754 3478999999887644
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=8.7e-13 Score=131.42 Aligned_cols=259 Identities=9% Similarity=0.073 Sum_probs=157.7
Q ss_pred cccceEEEEEcCCCCEEEEeecCC-----cEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
|...+..++|||||++||.+..++ .|++||+.+++.. . ..+..
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~---------------------~-~~~~~---------- 170 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL---------------------P-DVLER---------- 170 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE---------------------E-EEEEE----------
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---------------------c-ccccC----------
Confidence 444689999999999999876543 8999999887532 0 01111
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCCe----------------EEEEEccCCceeEEeeeecCCCccCCCCCcccccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDKT----------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~----------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (461)
..+..++|+ +||+.|+.++.++. |++|++.++............. ...+.
T Consensus 171 ----~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~----~~~~~---- 236 (710)
T 2xdw_A 171 ----VKFSCMAWT--HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE----PKWMG---- 236 (710)
T ss_dssp ----ECSCCEEEC--TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC----TTCEE----
T ss_pred ----cccceEEEE--eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC----CeEEE----
Confidence 226779999 67889999887765 9999998775322211111000 11122
Q ss_pred ccCcceeecCCCcccccccCCCCCccccccC-----CCcEEeeeeecccCccc-cceeeEeeecccccceeeEEeCCCCC
Q 012535 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGG-----VSSLRLPVVVTSQETNL-VAGCRRIYAHAHDYHINSISNNSDGE 246 (461)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (461)
.+.|+|+|+.+ +.... +..|.+|| +....... .......+ ..+...+.. .|+++|+
T Consensus 237 ---~~~~SpDg~~l------------~~~~~~~~~~~~~l~~~d-~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~s~dg~ 298 (710)
T 2xdw_A 237 ---GAELSDDGRYV------------LLSIREGCDPVNRLWYCD-LQQESNGITGILKWVKL-IDNFEGEYD-YVTNEGT 298 (710)
T ss_dssp ---EEEECTTSCEE------------EEEEECSSSSCCEEEEEE-GGGSSSSSCSSCCCEEE-ECSSSSCEE-EEEEETT
T ss_pred ---EEEEcCCCCEE------------EEEEEccCCCccEEEEEE-CcccccccCCccceEEe-eCCCCcEEE-EEeccCC
Confidence 57899999986 33222 56888888 43310000 00011111 334444443 4788888
Q ss_pred EEEEe-C----CCeEEEEEccCCCC-ceeeeccCCCCCCCCC--cceEEEEEeCCCCCeEEEEecCCe--EEEEECCCcc
Q 012535 247 TFISA-D----DLRINLWNLEISNQ-SFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGS--IRLIDMRQSA 316 (461)
Q Consensus 247 ~l~~~-~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~dg~--i~iwd~~~~~ 316 (461)
.|+.. . .+.|.+||+.+... ..+ .+..+. ..+..++|++++ .++++...|+. |.+||+.+++
T Consensus 299 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 299 VFTFKTNRHSPNYRLINIDFTDPEESKWK-------VLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEEEEECTTCTTCEEEEEETTSCCGGGCE-------EEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC
T ss_pred EEEEEECCCCCCCEEEEEeCCCCCcccce-------eccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC
Confidence 77654 3 34799999886532 111 122232 367889999776 78888888885 5566775554
Q ss_pred cccccccccccccCCCccccccccccceeEEEEccCCCEEEE--ec--C-CeEEEEEccCCCCC-eeEEee
Q 012535 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RD--Y-MTLKLWDINMDSGP-VATFQV 381 (461)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s--~~--d-~~i~vwd~~~~~~~-~~~~~~ 381 (461)
. +..+..+. +.+..+.++|++..++. .+ . ++|++||+.+ ++. ...++.
T Consensus 371 ~----~~~l~~~~------------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t-g~~~~~~l~~ 424 (710)
T 2xdw_A 371 L----LKIFPLEV------------GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK-EELEPRVFRE 424 (710)
T ss_dssp E----EEEECCCS------------SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS-SSCCCEEEEE
T ss_pred E----EEecCCCC------------ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC-CccceEEeee
Confidence 3 23333322 67889999999876663 23 2 8999999985 442 444544
No 188
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.51 E-value=1.3e-11 Score=108.55 Aligned_cols=201 Identities=13% Similarity=0.196 Sum_probs=133.1
Q ss_pred cccceEEEEE-cCCCCEEEEeec-CCcEEEEEcCCCCCCCCcccccccccccccCCcccccccccc-CCCcchhhccccc
Q 012535 34 EVDIISAIEF-DKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLE 110 (461)
Q Consensus 34 h~~~V~~~~~-s~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~ 110 (461)
|...+.++++ .++++++++... ++.|++|+.. ++ ....+. .+.
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~-----------------------~~~~~~~~~~---------- 120 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ-----------------------FVRKFGATIL---------- 120 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC-----------------------EEEEECTTTC----------
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-Cc-----------------------EEEEecCccC----------
Confidence 4467899999 577776666543 8899999943 32 111221 122
Q ss_pred cccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccc
Q 012535 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 190 (461)
..+.++++. +++.++++...++.|.+|+.... .......
T Consensus 121 --~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~------------------------------------ 159 (286)
T 1q7f_A 121 --QHPRGVTVD--NKGRIIVVECKVMRVIIFDQNGN-VLHKFGC------------------------------------ 159 (286)
T ss_dssp --SCEEEEEEC--TTSCEEEEETTTTEEEEECTTSC-EEEEEEC------------------------------------
T ss_pred --CCceEEEEe--CCCCEEEEECCCCEEEEEcCCCC-EEEEeCC------------------------------------
Confidence 347899998 55777777778889999985432 1111000
Q ss_pred cCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
..+...+..++++++++++++. .++.|.+||.. ++....
T Consensus 160 ---------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 199 (286)
T 1q7f_A 160 ---------------------------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQ 199 (286)
T ss_dssp ---------------------------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEE
T ss_pred ---------------------------------------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEE
Confidence 1122456789999999888777 68999999975 332221
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC-eEEEEECCCcccccccccccccccCCCccccccccccceeEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 348 (461)
+ ...++...+..++++|++ +++++...++ .|.+||... +. +..+..+.. ...+.+++
T Consensus 200 ~------~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g-~~----~~~~~~~~~----------~~~~~~i~ 257 (286)
T 1q7f_A 200 I------GGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDG-QL----ISALESKVK----------HAQCFDVA 257 (286)
T ss_dssp E------SCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTS-CE----EEEEEESSC----------CSCEEEEE
T ss_pred E------ccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCC-CE----EEEEcccCC----------CCcceeEE
Confidence 1 112233568899999998 8888887776 999999653 32 333332210 13477999
Q ss_pred EccCCCEEEEecCCeEEEEEccC
Q 012535 349 FARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 349 ~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
++|+|+++++..++.|++|++..
T Consensus 258 ~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 258 LMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EETTTEEEEEETTTEEEEEECSC
T ss_pred ECCCCcEEEECCCCeEEEEEccc
Confidence 99999888876579999999864
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=2e-11 Score=106.12 Aligned_cols=238 Identities=10% Similarity=0.025 Sum_probs=157.9
Q ss_pred CCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCC
Q 012535 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (461)
Q Consensus 125 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 204 (461)
.+++|++++.|+.|.+||.++++.......+.. ..+. .+.++|+|+.+ + +.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-------~~~~-------~~~~~pdG~il------------v--s~~ 55 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-------WECN-------SVAATKAGEIL------------F--SYS 55 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-------CCCC-------EEEECTTSCEE------------E--ECB
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-------CCCc-------CeEECCCCCEE------------E--eCC
Confidence 367899999999999999989988776654320 0111 67888999874 4 456
Q ss_pred CcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-CCeEEEEEccCCCCceeeeccCCCCCCCCC
Q 012535 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (461)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (461)
+.|..|| .+ .+....+..+....+.++.+.++|+++++. . ++.|..+|.. ++....+ .+.. ....+.
T Consensus 56 ~~V~~~d----~~----G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~-~~~~-~~~~~~ 124 (276)
T 3no2_A 56 KGAKMIT----RD----GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKT-EFET-GIERPH 124 (276)
T ss_dssp SEEEEEC----TT----SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEE-EECC-SCSSGG
T ss_pred CCEEEEC----CC----CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEE-eccC-CCCccc
Confidence 7788887 22 223333322223467889999999999987 5 7778777763 4433322 1111 112222
Q ss_pred cceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC-
Q 012535 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 361 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d- 361 (461)
.....+++.++| +++++...++.|..||.. ++. +..+... ..+.++.+.++|++++++.+
T Consensus 125 ~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~----~w~~~~~-------------~~~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 125 AQFRQINKNKKG-NYLVPLFATSEVREIAPN-GQL----LNSVKLS-------------GTPFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp GSCSCCEECTTS-CEEEEETTTTEEEEECTT-SCE----EEEEECS-------------SCCCEEEECTTSCEEEECBTT
T ss_pred ccccCceECCCC-CEEEEecCCCEEEEECCC-CCE----EEEEECC-------------CCccceeEcCCCCEEEEeCCC
Confidence 345677889998 899999999999999998 765 3444432 23556788899999998765
Q ss_pred CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEec--CC------CeEEEEecCCC
Q 012535 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YS------NLFRVFGCSEG 430 (461)
Q Consensus 362 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d------g~i~iw~~~~~ 430 (461)
+.|..+|..+ ++.+-.+..+.... ..+..+..++..++|.++++.. .. +..+++++...
T Consensus 186 ~~v~~~d~~t-G~~~w~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~ 252 (276)
T 3no2_A 186 HCFVQLNLES-NRIVRRVNANDIEG---------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE 252 (276)
T ss_dssp SEEEEECTTT-CCEEEEEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT
T ss_pred CeEEEEeCcC-CcEEEEecCCCCCC---------ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC
Confidence 7899999986 88888776443111 0122335788889999888763 21 23466667433
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=2.1e-10 Score=104.23 Aligned_cols=297 Identities=7% Similarity=-0.021 Sum_probs=171.1
Q ss_pred EEcCCCCEEEEeec--CC---cEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 42 EFDKSGDHLATGDR--GG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 42 ~~s~~g~~l~tg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
...|+++++++... .+ +|.++|..+++.. ..+.... . -
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----------------------~~i~~g~------------~-p- 69 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF------------L-P- 69 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-----------------------EEecCCC------------C-C-
Confidence 44578887777664 22 7899998876521 2222221 2 2
Q ss_pred EEEEeecCCCcEEEEEe----------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
.++++ +|+++++++. .++.|.+||..+.+............. . ....|..+.++|+|+.+
T Consensus 70 ~i~~s--pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~-~-------~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVAA--HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-D-------VGPYSWMNANTPNNADL 139 (373)
T ss_pred CeEEC--CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc-c-------cCCCccceEECCCCCEE
Confidence 88898 6687888875 368899999988776655443200000 0 00112277999999986
Q ss_pred cccccCCCCCccccccC--CCcEEeeeeecccCccccceeeEe-eecccccceeeEEeCCCCC-EEEEe-CCCeEEEEEc
Q 012535 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL 261 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~ 261 (461)
+++.. ++.|.++| -.. +.... . .. -.++.+.|++. .+++. .||.+.++|.
T Consensus 140 ------------~v~n~~~~~~v~viD-~t~-------~~~~~~i-~~----~~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 140 ------------LFFQFAAGPAVGLVV-QGG-------SSDDQLL-SS----PTCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ------------EEEecCCCCeEEEEE-CCC-------CEEeEEc-CC----CceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 55442 46788765 211 11111 1 10 01244556653 33444 7999999999
Q ss_pred cCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccc
Q 012535 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (461)
+++..... ...+ .+.+.........+.+++ ..++..+..+.+.+.|+....... +..+......... ..-..
T Consensus 195 -~g~~~~~~-~~~~-~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~--~~~~p 266 (373)
T 2mad_H 195 -AGGAAGAG-LVGA-MLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKA--DTWRP 266 (373)
T ss_pred -CCcEEEEE-eccc-cccCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcccc--cceec
Confidence 55433111 1000 011111112345677776 444444578899999997653210 1111110000000 00001
Q ss_pred cceeEEEEccCCCEEEEec-----------CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 342 ASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
.....+.++|+++.|+.+. .+.|.++|+.+ .+.+..+...... ..++|+|||
T Consensus 267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg 329 (373)
T 2mad_H 267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDG 329 (373)
T ss_pred CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCC
Confidence 2345578999998877742 25799999986 7777877644332 389999999
Q ss_pred C-EEEEec-CCCeEEEEecCCCCccce
Q 012535 411 G-RVATGS-YSNLFRVFGCSEGSAEST 435 (461)
Q Consensus 411 ~-~l~s~~-~dg~i~iw~~~~~~~~~~ 435 (461)
+ +|+++. .++.|.++|+.+++....
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9 777776 589999999999987644
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=2.2e-10 Score=101.22 Aligned_cols=279 Identities=8% Similarity=-0.015 Sum_probs=175.0
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
...+.+++++++|+++++...++.|.+|+.. ++.. . ..+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence 4578999999999988877778999999976 3211 0 0111112 44
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
+.++++. +++.++++...++.|..||.. ++.... ..... ...+. .+++.++|...
T Consensus 64 ~~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~~~~------~~~~~-------~i~~~~~g~l~-------- 118 (300)
T 2qc5_A 64 VMCLIVS--SLGDIWFTENGANKIGKLSKK-GGFTEY-PLPQP------DSGPY-------GITEGLNGDIW-------- 118 (300)
T ss_dssp EEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEE-ECSST------TCCEE-------EEEECSTTCEE--------
T ss_pred ceeEEEC--CCCCEEEEecCCCeEEEECCC-CCeEEe-cCCCC------CCCCc-------cceECCCCCEE--------
Confidence 8889987 557677766678899999987 554322 11100 01122 67778888753
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
++...++.|..++ . +. .............+..++++++++++++. .++.|..+|.. ++ ...+
T Consensus 119 ----v~~~~~~~i~~~~-~---~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~--- 181 (300)
T 2qc5_A 119 ----FTQLNGDRIGKLT-A---DG----TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY--- 181 (300)
T ss_dssp ----EEETTTTEEEEEC-T---TS----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE---
T ss_pred ----EEccCCCeEEEEC-C---CC----CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe---
Confidence 5555577888777 2 21 11111112234568899999999977776 58899999883 33 2221
Q ss_pred CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 274 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
........+..+++++++ .+.++....+.|.+||. .+.... ..+... ...+.+++++++|
T Consensus 182 ---~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~------------~~~~~~i~~d~~g 241 (300)
T 2qc5_A 182 ---PLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISE---YDIPTP------------NARPHAITAGKNS 241 (300)
T ss_dssp ---ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEE---EECSST------------TCCEEEEEECSTT
T ss_pred ---eCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEE---EECCCC------------CCCceEEEECCCC
Confidence 122334568899999998 77776666788999998 433211 111111 1457899999999
Q ss_pred CEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 354 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 354 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
++.++.. ++.|..||.. +.. ..+...... ..+.+++++++|+++++.. . .|..++.+
T Consensus 242 ~l~v~~~~~~~i~~~~~~--g~~-~~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITND--NTI-QEYQLQTEN-------------AEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CEEEEETTTTEEEEECTT--SCE-EEEECCSTT-------------CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CEEEeccCCCeEEEECCC--CcE-EEEECCccC-------------CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 8776654 4899999983 332 233211110 0124899999998777665 4 77777654
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=1.1e-11 Score=123.99 Aligned_cols=241 Identities=11% Similarity=0.037 Sum_probs=143.7
Q ss_pred ceEEEEEeecCCCcEEEEEeCC-----CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 114 KINKIRWCQSANSALYLLSTND-----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
.+..++|| +||++|+.++.+ .+|++||+.+++.......... +. .++|+|+ +.+
T Consensus 164 ~~~~~~~S--PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~---------~~-------~~~wspD-~~l-- 222 (741)
T 1yr2_A 164 ALDAWAAS--DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVK---------FS-------GLAWLGN-DAL-- 222 (741)
T ss_dssp EEEEEEEC--TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEE---------SC-------CCEESTT-SEE--
T ss_pred EEEeEEEC--CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCce---------ec-------cEEEECC-CEE--
Confidence 58889999 678888887543 4699999999886543211110 01 6799999 875
Q ss_pred cccCCCCCccccccCCC--------------cEEeeeeecccCccccceeeEee-ecccccceeeEEeCCCCCEEEEe-C
Q 012535 189 NFGCASNDSSFPPGGVS--------------SLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-D 252 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~--------------~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (461)
+.+..++ .|.+|+ +.. ...... ..+ ...+...+..+.|+|+|++|+.. .
T Consensus 223 ----------~~~~~~~~~~~~~~~~~~~~~~v~~~~-lgt---~~~~~~-lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 223 ----------LYSRFAEPKEGQAFQALNYNQTVWLHR-LGT---PQSADQ-PVFATPELPKRGHGASVSSDGRWVVITSS 287 (741)
T ss_dssp ----------EEEECCCC--------CCCCCEEEEEE-TTS---CGGGCE-EEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ----------EEEEecCcccccccccCCCCCEEEEEE-CCC---CchhCE-EEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence 4333332 377777 322 111111 111 12233357889999999988875 3
Q ss_pred C-----CeEEEEEccCCC-C-ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec----CCeEEEEECCCcc-cccc
Q 012535 253 D-----LRINLWNLEISN-Q-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSA-LCDT 320 (461)
Q Consensus 253 d-----~~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~ 320 (461)
+ ..|.+||+.++. . ... +..+...+... ++|++ ..|+..+. ++.|.+||+.++. ..
T Consensus 288 ~~~~~~~~l~~~d~~~~~~~~~~~--------l~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~-- 355 (741)
T 1yr2_A 288 EGTDPVNTVHVARVTNGKIGPVTA--------LIPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF-- 355 (741)
T ss_dssp CTTCSCCEEEEEEEETTEECCCEE--------EECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE--
T ss_pred ccCCCcceEEEEECCCCCCcccEE--------ecCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc--
Confidence 3 389999997552 2 222 22233334444 34888 67776665 3459999987742 11
Q ss_pred cccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec-cCccccccccccCCCc
Q 012535 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSI 398 (461)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 398 (461)
...+..+. ..+..+.|+ ++.++++.. ++..+||.+...+.....+..+ ...
T Consensus 356 -~~l~~~~~------------~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~------------- 408 (741)
T 1yr2_A 356 -DTVVPESK------------DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS------------- 408 (741)
T ss_dssp -EEEECCCS------------SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE-------------
T ss_pred -EEEecCCC------------CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE-------------
Confidence 11122221 346677787 555666654 5777776655335555555432 222
Q ss_pred cceeeEEEecCCCEEE----EecCCCeEEEEecCCCC
Q 012535 399 FDKFECCLSGDGGRVA----TGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~ 431 (461)
+..++++|+++.|+ +....+.|++||+.+++
T Consensus 409 --v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 409 --ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp --EEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred --EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 23788999988666 33456899999998875
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=2.7e-11 Score=107.93 Aligned_cols=157 Identities=8% Similarity=0.081 Sum_probs=100.2
Q ss_pred ceeeEEeCCCCCEEEEe-CC---------------CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEe----CCC
Q 012535 235 HINSISNNSDGETFISA-DD---------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PTH 294 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----p~~ 294 (461)
.+.+++++++++++++. .+ +.|..|+.. + ....+ ..+......++++ |++
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~--------~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQV--------DTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEE--------EEEESSEEEEEEEECTTSCE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEEEe--------ccCCCCcceEEEecccCCCC
Confidence 45677888888777766 33 456666654 2 22211 1123346789999 998
Q ss_pred CCeEEEE-ecCCeEEEEECC-Ccccccc-cccccccccCCCccccccccc-cceeEEEEccCCCEEEEec-CCeEEEEEc
Q 012535 295 CNMLAYS-SSKGSIRLIDMR-QSALCDT-HSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRD-YMTLKLWDI 369 (461)
Q Consensus 295 ~~~l~~~-~~dg~i~iwd~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~g~~l~s~~-d~~i~vwd~ 369 (461)
+.|+.+ ..++.|.+||+. .+..... ....+. ++. ..+..++++++|+++++.. ++.|.+||.
T Consensus 188 -~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~------------~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 188 -YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP------------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp -EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC------------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred -CEEEEEECCCCeEEEEECCCCCccccceEEEECC------------CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 555444 568899999976 3321100 011111 111 3467899999999888764 589999998
Q ss_pred cCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-EEEEecCCCeEEEEecCCC
Q 012535 370 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 430 (461)
.+ ++.+..+..+...+ .+++++++++ ++++...++.|..|++...
T Consensus 255 ~~-g~~~~~~~~~~~~~---------------~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 255 DG-GQPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TC-BSCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CC-CcEeEEEeCCCCCc---------------eeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 74 56666665543322 4899999999 4555566789999998743
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.47 E-value=6.5e-11 Score=106.09 Aligned_cols=252 Identities=7% Similarity=-0.012 Sum_probs=155.3
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
.....+++. +++++++...++.|.+||..+++. ...+.. . ...
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-----------------------~~~i~~-~------------~~p 86 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-----------------------VGRITG-F------------TSP 86 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEEC-C------------SSE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-----------------------EEEcCC-C------------CCC
Confidence 446778875 344555666689999999987753 222321 1 347
Q ss_pred EEEEEeecCCCcEEEEEe-CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 116 NKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
..+++++ ++ .++++. .++.|.+||..+++............ ....+..+++ .+++.
T Consensus 87 ~~i~~~~--~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~----------~~~~p~~i~~-~~~~l--------- 143 (328)
T 3dsm_A 87 RYIHFLS--DE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM----------ESGSTEQMVQ-YGKYV--------- 143 (328)
T ss_dssp EEEEEEE--TT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT----------TTCBCCCEEE-ETTEE---------
T ss_pred cEEEEeC--CC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc----------cCCCcceEEE-ECCEE---------
Confidence 8899984 45 455554 89999999999988766554322000 0001125555 33332
Q ss_pred CCcccccc-CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CC----------CeEEEEEcc
Q 012535 195 NDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----------LRINLWNLE 262 (461)
Q Consensus 195 ~~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----------~~i~iwd~~ 262 (461)
+++.. .++.|.++| .... +....+.. ......++++|+|++++++ .+ +.|.++|..
T Consensus 144 ---yv~~~~~~~~v~viD-~~t~------~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 144 ---YVNCWSYQNRILKID-TETD------KVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ---EEEECTTCCEEEEEE-TTTT------EEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ---EEEcCCCCCEEEEEE-CCCC------eEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 23333 478999998 3221 12222211 2345788999999988887 44 789999988
Q ss_pred CCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (461)
+.+....+ .+. ....+..++|+|++ +.|+++.. .|.+||..+++.... ..+... ..
T Consensus 212 t~~v~~~~------~~~-~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~--~~~~~~------------~~ 267 (328)
T 3dsm_A 212 TFTVEKQF------KFK-LGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPVR--PFLEFR------------DT 267 (328)
T ss_dssp TTEEEEEE------ECC-TTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCSS--CSBCCC------------SS
T ss_pred CCeEEEEE------ecC-CCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceeee--eeecCC------------CC
Confidence 65432221 111 12367899999998 77776544 899999988764210 111110 14
Q ss_pred ceeEEEEcc-CCCEEEEe----cC-CeEEEEEccCCCCCeeEEeeccCc
Q 012535 343 SISDIKFAR-NGRHILSR----DY-MTLKLWDINMDSGPVATFQVHEHL 385 (461)
Q Consensus 343 ~v~~l~~s~-~g~~l~s~----~d-~~i~vwd~~~~~~~~~~~~~~~~~ 385 (461)
....++++| ++.+.++. .. +.|.+||.. ++.+..+.....+
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~--g~~~~~i~~G~~P 314 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ--GKLIDEFYVGIIP 314 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT--CCEEEEEEEEESE
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC--CCEEEEEEeccCc
Confidence 578999999 55555554 33 899999986 7888877654443
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.46 E-value=1.7e-11 Score=111.04 Aligned_cols=232 Identities=9% Similarity=0.123 Sum_probs=140.9
Q ss_pred cceEEEEEcCCCCEEEEeecC---Cc--EEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccc
Q 012535 36 DIISAIEFDKSGDHLATGDRG---GR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (461)
..+.+++|||||++||.++.+ +. |.+|++.+++.. .+..+.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~------------------------~l~~~~---------- 104 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK------------------------KILEAK---------- 104 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE------------------------EEEEES----------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE------------------------EEEcCC----------
Confidence 568899999999999988754 33 777777655311 122222
Q ss_pred cccceEEEEEeecCCCcEEEEEeCC---------------------------CeEEEEEccCCceeEEeeeecCCCccCC
Q 012535 111 IEEKINKIRWCQSANSALYLLSTND---------------------------KTIKLWKVQEKKVKKVFDWNVHPEKAAG 163 (461)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d---------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 163 (461)
. +..++|+ +|++.|+.++.+ ..|.+|++.+++........ .
T Consensus 105 --~-~~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~------ 172 (347)
T 2gop_A 105 --N-IRSLEWN--EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-R------ 172 (347)
T ss_dssp --E-EEEEEEC--TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-T------
T ss_pred --C-ccceeEC--CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-C------
Confidence 4 8889999 567788887632 57899999888762222211 1
Q ss_pred CCCccccccccCcceeecCCCcccccccCCCCCccccccCC------C-cEEeeeeecccCccccceeeEeeecccccce
Q 012535 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV------S-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHI 236 (461)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 236 (461)
+. .+.|+|+| .+ +++..+ . ...+|. +. . ...... ..+ ..+
T Consensus 173 ---~~-------~~~~spdg-~~------------~~~~~~~~~~~~~~~~~l~~-~d---~---~~~~~l--~~~-~~~ 219 (347)
T 2gop_A 173 ---FS-------SGIWHRDK-IV------------VNVPHREIIPQYFKFWDIYI-WE---D---GKEEKM--FEK-VSF 219 (347)
T ss_dssp ---TC-------EEEEETTE-EE------------EEEECCCSSCCSSCCEEEEE-EE---T---TEEEEE--EEE-ESE
T ss_pred ---cc-------cccCCCCe-EE------------EEEecccccccccccccEEE-eC---C---CceEEe--ccC-cce
Confidence 11 67899999 53 444333 2 556766 32 1 111111 122 344
Q ss_pred eeEEeCCCCCEEEEe-CC--------CeEEEEEccCCCCceeeeccCCCCCCCCCcceEE-EEEeCCCCCeEEEEecCCe
Q 012535 237 NSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-AEFHPTHCNMLAYSSSKGS 306 (461)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~~~~~dg~ 306 (461)
..+ +|+|+.|+.+ .+ ..|.+|| ++ .... ....+...+.. +.|+ ++ ++++++.++.
T Consensus 220 ~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~-------l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~ 284 (347)
T 2gop_A 220 YAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMG-------ILDEVDRGVGQAKIKD-GK--VYFTLFEEGS 284 (347)
T ss_dssp EEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEE-------SSTTCCSEEEEEEEET-TE--EEEEEEETTE
T ss_pred eeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-ceEe-------ccccCCcccCCccEEc-Cc--EEEEEecCCc
Confidence 443 9999988765 32 3677777 23 2222 13345667776 8999 75 8888999999
Q ss_pred EEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeE-EEEEccCCCCCeeEEeeccC
Q 012535 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTL-KLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i-~vwd~~~~~~~~~~~~~~~~ 384 (461)
++|| +.+++. ..+..+. ..|.+++|+| .++++++ ++.. .||.+. ++ ...+..|..
T Consensus 285 ~~l~-~~~g~~-----~~~~~~~------------~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~-~~~lt~~n~ 341 (347)
T 2gop_A 285 VNLY-IWDGEI-----KPIAKGR------------HWIMGFDVDE--IVVYLKETATRLRELFTWD--GE-EKQLTDYND 341 (347)
T ss_dssp EEEE-EESSSE-----EEEECSS------------SEEEEEEESS--SEEEEEECSSSCCEEEEES--SS-EEECCCTTS
T ss_pred EEEE-EcCCce-----EEEecCC------------CeEEeeeeeC--cEEEEEcCCCChHHheEeC--Cc-EEEeccccH
Confidence 9999 874432 1111112 6789999999 5666644 4433 666664 22 444555443
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.45 E-value=3.1e-11 Score=104.96 Aligned_cols=249 Identities=9% Similarity=0.065 Sum_probs=159.2
Q ss_pred CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCC
Q 012535 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (461)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~ 125 (461)
.+++|++++.++.|.+||.++++. +-.+..+.. ..++++.++ ++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------------~w~~~~~~~-----------~~~~~~~~~--pd 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-----------------------VWEYPLEKG-----------WECNSVAAT--KA 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-----------------------EEEEECCTT-----------CCCCEEEEC--TT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-----------------------EEEeCCCcc-----------CCCcCeEEC--CC
Confidence 457999999999999999877763 233333320 237888888 56
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccC-C
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG-V 204 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 204 (461)
|++++ +.++.|..||. +++.......... ..+. +..+.++|+.+ ++.+. +
T Consensus 48 G~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~-------~~~~-------~~~~~~dG~~l------------v~~~~~~ 98 (276)
T 3no2_A 48 GEILF--SYSKGAKMITR-DGRELWNIAAPAG-------CEMQ-------TARILPDGNAL------------VAWCGHP 98 (276)
T ss_dssp SCEEE--ECBSEEEEECT-TSCEEEEEECCTT-------CEEE-------EEEECTTSCEE------------EEEESTT
T ss_pred CCEEE--eCCCCEEEECC-CCCEEEEEcCCCC-------cccc-------ccEECCCCCEE------------EEecCCC
Confidence 77777 45788999998 6766665543210 0122 55778888874 55444 5
Q ss_pred CcEEeeeeecccCccccceeeEe-eecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCC
Q 012535 205 SSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (461)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (461)
+.+..++ .+.....+.... ....+......+++.++|+++++. .++.|..||.+ ++...+. . ..
T Consensus 99 ~~v~~vd----~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~--------~-~~ 164 (276)
T 3no2_A 99 STILEVN----MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSV--------K-LS 164 (276)
T ss_dssp EEEEEEC----TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEE--------E-CS
T ss_pred CEEEEEe----CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEE--------E-CC
Confidence 6666555 222211111100 001222345667889999999998 79999999987 6655442 1 12
Q ss_pred cceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCC
Q 012535 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 362 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~ 362 (461)
..+.++...+++ +++++++.++.|..+|..+++..+ .+.....+.. ....+..+...++|..+++..+|
T Consensus 165 ~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w----~~~~~~~~~~------~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 165 GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVR----RVNANDIEGV------QLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEE----EEEGGGSBSC------CCSEEEEEEECTTSCEEEEEECT
T ss_pred CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEE----EecCCCCCCc------cccccccceEcCCCCEEEEeccC
Confidence 345678888998 889988888899999999888743 3322211000 01347888999999998886432
Q ss_pred ---------eEEEEEccCCCCCeeEEeeccC
Q 012535 363 ---------TLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 363 ---------~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
..+++.+...++.+-.+..+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred ccccccccCCceEEEECCCCCEEEEecCccc
Confidence 4467777555666666654443
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=3.4e-11 Score=108.01 Aligned_cols=264 Identities=12% Similarity=0.084 Sum_probs=153.5
Q ss_pred EEEEcCCCCEEEEee----------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.++++|||++|++++ .++.|.+||..+.+.. ..+.-... +..
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~-----------------------~~I~v~~g-----~r~ 133 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-----------------------ADIELPDA-----PRF 133 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTC-----CCC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE-----------------------EEEECCCc-----ccc
Confidence 499999999888776 3678999999887532 11110000 000
Q ss_pred ccccceEEEEEeecCCCcEEEEEeC--CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
.....-..++|+ +||++++++.. ++.|.++|+.+++......... +....|.|...
T Consensus 134 ~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-------------------~~~~~P~g~~~- 191 (386)
T 3sjl_D 134 LVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-------------------CYHIFPTAPDT- 191 (386)
T ss_dssp CBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-------------------EEEEEEEETTE-
T ss_pred ccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-------------------cceeecCCCce-
Confidence 000124568888 67888888863 6899999999998877665421 11112222211
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccce-eeEEe-CCCCCEEEEeCCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI-NSISN-NSDGETFISADDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~-~~~~~~l~~~~d~~i~iwd~~~~~ 265 (461)
+++.+.||.+.+.+ +...... ..... ..+......+ ....| .++|++++.+.+|.|.+.|.....
T Consensus 192 ----------~~~~~~DG~~~~v~-~~~~g~v-~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 192 ----------FFMHCRDGSLAKVA-FGTEGTP-EITHT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 258 (386)
T ss_dssp ----------EEEEETTSCEEEEE-CCSSSCC-EEEEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred ----------eEEECCCCCEEEEE-CCCCCeE-EEeec-ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc
Confidence 24555666666655 3221110 00000 0111111112 12355 367877776678999999987543
Q ss_pred Cce-eeecc-CC--CCCCCCCcceEEEEEeCCCCCeEEEEec----------CCeEEEEECCCcccccccccccccccCC
Q 012535 266 QSF-NIVDV-KP--ANMEDLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 266 ~~~-~~~~~-~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
... ..+.+ .. .......+....++++|++ +.++.... ..+|.++|+.+.+. +..+...
T Consensus 259 ~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv----~~~i~vg--- 330 (386)
T 3sjl_D 259 AKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEMG--- 330 (386)
T ss_dssp CEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEE---
T ss_pred ceeecceeccccccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeE----EEEEECC---
Confidence 211 10000 00 0000112334467789998 66665543 25799999999876 4444433
Q ss_pred CccccccccccceeEEEEccCCC-EEEEec--CCeEEEEEccCCCCCeeEEeeccCc
Q 012535 332 GTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQVHEHL 385 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~-~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~ 385 (461)
..+.+|.+++|++ +|++++ ++.|.++|..+ ++.+.++.....+
T Consensus 331 ----------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-~k~~~~i~~~~~p 376 (386)
T 3sjl_D 331 ----------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG 376 (386)
T ss_dssp ----------EEECEEEECSSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSS
T ss_pred ----------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-CcEEEEecCCCCC
Confidence 3578999999997 677654 59999999996 8888888765544
No 198
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=6.6e-11 Score=108.11 Aligned_cols=294 Identities=7% Similarity=0.007 Sum_probs=170.1
Q ss_pred CCCCEEEEeecC-----CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEE
Q 012535 45 KSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (461)
Q Consensus 45 ~~g~~l~tg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (461)
++++.+++.... +.|.++|..+.+.+ ..+..-. .+ .++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-----------------------~~I~vG~------------~P--gia 124 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-----------------------GMTDGGF------------LP--HPV 124 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC--EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-----------------------EEEECCC------------CC--ceE
Confidence 477776666543 69999999877532 2222222 23 789
Q ss_pred EeecCCCcEEEEEe----------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 120 ~~p~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
++ +|+++++++. .++.|.++|..+.+.............. ....|..+.++|+|+.+
T Consensus 125 ~S--pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--------~g~~P~~~~~spDGk~l--- 191 (426)
T 3c75_H 125 AA--EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--------VGTYQWMNALTPDNKNL--- 191 (426)
T ss_dssp EC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSCCGGGSEECTTSSEE---
T ss_pred EC--CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc--------cCCCcceEEEcCCCCEE---
Confidence 98 5677777775 4779999999998877665542100000 00112278999999986
Q ss_pred ccCCCCCcccccc--CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCC-CEEEEe-CCCeEEEEEccCCC
Q 012535 190 FGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 190 ~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~ 265 (461)
+++. .++.|.+.| +...+ ....+..+. +....|++ ..+++. .||.+.+.+..+.+
T Consensus 192 ---------yV~n~~~~~~VsVID-~~t~k------vv~~I~v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 192 ---------LFYQFSPAPAVGVVD-LEGKT------FDRMLDVPD-----CYHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ---------EEEECSSSCEEEEEE-TTTTE------EEEEEECCS-----EEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ---------EEEecCCCCeEEEEE-CCCCe------EEEEEEcCC-----ceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 5544 267899988 32221 111111111 11223332 333333 56777766763332
Q ss_pred CceeeeccCCCCCCCCCcc-eEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccce
Q 012535 266 QSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 344 (461)
... ... ..+.-.... ...+.|.+++ ..++.....+.+.+.|+....... +..+....... ..........
T Consensus 251 v~~-~~~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~--i~~g~~p~g~ 321 (426)
T 3c75_H 251 TKV-TNT---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAE--RADDWRPGGW 321 (426)
T ss_dssp CEE-EEC---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTT--GGGTEEECSS
T ss_pred EEE-Eee---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccc--cccccccCCc
Confidence 221 100 001111111 1245789988 666666778999999987654210 11111000000 0000000223
Q ss_pred eEEEEccCCCEEEEec-----------CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC-E
Q 012535 345 SDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-R 412 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 412 (461)
..++++|+++.|+... .+.|.+.|+.+ .+.+..+...... +.++|+|||+ +
T Consensus 322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~ 384 (426)
T 3c75_H 322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPL 384 (426)
T ss_dssp SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCE
T ss_pred eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEE
Confidence 3478999988777643 25799999997 8888888654433 3899999999 8
Q ss_pred EEEec-CCCeEEEEecCCCCccce
Q 012535 413 VATGS-YSNLFRVFGCSEGSAEST 435 (461)
Q Consensus 413 l~s~~-~dg~i~iw~~~~~~~~~~ 435 (461)
|++.. .++.|.++|+.+++....
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEE
Confidence 88777 599999999999987643
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=5.4e-10 Score=100.23 Aligned_cols=297 Identities=8% Similarity=0.019 Sum_probs=170.3
Q ss_pred EEEcCCCCEEEEeec-----CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 41 IEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 41 ~~~s~~g~~l~tg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
....|+++.+++... ++.|.+.|..+++. +..+..-. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-----------------------~~~I~vG~------------~P- 81 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------LP- 81 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC-
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-----------------------EEEEECCC------------CC-
Confidence 455789998888875 67999999887653 22332222 22
Q ss_pred EEEEEeecCCCcEEEEEe----------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 116 NKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
. ++++ +|+++++++. .++.|.+||..+.+............ ......|..++++|+|+.
T Consensus 82 ~-va~s--pDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 82 N-PVVA--DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp E-EEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSSE
T ss_pred c-EEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCCE
Confidence 4 8998 6677777765 36789999999988777665421000 000011227899999998
Q ss_pred ccccccCCCCCcccccc--CCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEcc
Q 012535 186 GERNFGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (461)
+ +++. .++.|.++| +...+ ....+.... . ...+....+.+++. .||++.+.++.
T Consensus 151 l------------yVan~~~~~~VsVID-~~t~~------vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 151 L------------LFYQFSPAPAVGVVD-LEGKA------FKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp E------------EEEECSSSCEEEEEE-TTTTE------EEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred E------------EEEEcCCCCeEEEEE-CCCCc------EEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECC
Confidence 6 5443 368899999 32221 112210100 0 11122223344333 67777777776
Q ss_pred CCCCceeeeccCCCCCCCCCcceE-EEEEe-CCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccc
Q 012535 263 ISNQSFNIVDVKPANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (461)
.......... + .+......+. ...|. ++| +++ ..+.+|+|.+.|+.+..... +..+..... ......-.
T Consensus 208 ~~g~v~~~~~-~--~~~~~~~~~~~~~~~~~~dG-~~~-~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~--~~~~~g~~ 278 (386)
T 3sjl_D 208 TEGTPEITHT-E--VFHPEDEFLINHPAYSQKAG-RLV-WPTYTGKIHQIDLSSGDAKF--LPAVEALTE--AERADGWR 278 (386)
T ss_dssp SSSCCEEEEC-C--CCSCTTSCBCSCCEEETTTT-EEE-EEBTTSEEEEEECTTSSCEE--CCCEESSCH--HHHHTTEE
T ss_pred CCCeEEEeec-c--eeccccccccccceeEcCCC-cEE-EEeCCCEEEEEECCCCccee--ecceecccc--cccccccc
Confidence 4222211100 0 1111112221 24665 566 444 46668999999997654210 111110000 00000000
Q ss_pred ccceeEEEEccCCCEEEEec-----------CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecC
Q 012535 341 IASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (461)
Q Consensus 341 ~~~v~~l~~s~~g~~l~s~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (461)
......++++++++.|+... .+.|.+.|+.+ .+.+..+...... +.+++++|
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D 341 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQD 341 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSS
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCC
Confidence 13345678899998888742 15799999997 8888887654322 48999999
Q ss_pred CC-EEEE-ecCCCeEEEEecCCCCcc
Q 012535 410 GG-RVAT-GSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 410 ~~-~l~s-~~~dg~i~iw~~~~~~~~ 433 (461)
++ +|++ ...++.|.++|..+++..
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 97 6655 456899999999999765
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.41 E-value=7.3e-10 Score=97.76 Aligned_cols=238 Identities=7% Similarity=0.005 Sum_probs=154.4
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..+.++++. +++..+++...++.|.+|+.. ++....... .. ...+. .+++.++|...
T Consensus 15 ~~~~~i~~d--~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~-~~------~~~~~-------~i~~~~~g~l~------ 71 (299)
T 2z2n_A 15 TGPYGITVS--DKGKVWITQHKANMISCINLD-GKITEYPLP-TP------DAKVM-------CLTISSDGEVW------ 71 (299)
T ss_dssp CCEEEEEEC--TTSCEEEEETTTTEEEEECTT-CCEEEEECS-ST------TCCEE-------EEEECTTSCEE------
T ss_pred CCccceEEC--CCCCEEEEecCCCcEEEEcCC-CCeEEecCC-cc------cCcee-------eEEECCCCCEE------
Confidence 458999998 567666666668999999988 554332211 00 11222 67888888763
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++...++.|..|+ . +.. ............+..+++++++.++++. .++.|..||.. +... ..
T Consensus 72 ------v~~~~~~~i~~~~-~---~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~- 134 (299)
T 2z2n_A 72 ------FTENAANKIGRIT-K---KGI----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKIR-EY- 134 (299)
T ss_dssp ------EEETTTTEEEEEC-T---TSC----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EE-
T ss_pred ------EeCCCCCeEEEEC-C---CCc----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCEE-Ee-
Confidence 5555577888887 2 211 1111112244578899999999988887 68899999983 3222 11
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
........+..+++++++ ++.++...++.|..||. +++.. .+.... ....+.++++++
T Consensus 135 -----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~----------~~~~~~~i~~~~ 192 (299)
T 2z2n_A 135 -----ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKIPT----------PASGPVGITKGN 192 (299)
T ss_dssp -----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEECSS----------TTCCEEEEEECT
T ss_pred -----cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeCCC----------CCCcceeEEECC
Confidence 122234568999999998 77777767889999998 55431 111110 114578999999
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+|++.++.. .+.|.+||. . ++. ..+..... ...+..++++++|+++++...++.|..||..
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~-g~~-~~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-S-GEI-TEFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-T-CCE-EEEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCEEEEccCCceEEEECC-C-CcE-EEEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 999777764 589999998 4 442 22321110 0113489999999988777678999999983
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=4.3e-10 Score=99.24 Aligned_cols=230 Identities=8% Similarity=0.074 Sum_probs=142.6
Q ss_pred ceEEEEEcCCC-CEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 37 IISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 37 ~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
---+..|++++ .++++...++.|..||..++... .+. .. ..+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------~~~-~~------------~~~ 56 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------RVT-MD------------APV 56 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------EEE-CS------------SCE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------EEe-CC------------Cce
Confidence 34588999954 46666667889999998765411 111 11 448
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
.+++++ +++.++ ++. ++.|.+||.++++...+.....
T Consensus 57 ~~i~~~--~dG~l~-v~~-~~~l~~~d~~~g~~~~~~~~~~--------------------------------------- 93 (297)
T 3g4e_A 57 SSVALR--QSGGYV-ATI-GTKFCALNWKEQSAVVLATVDN--------------------------------------- 93 (297)
T ss_dssp EEEEEB--TTSSEE-EEE-TTEEEEEETTTTEEEEEEECCT---------------------------------------
T ss_pred EEEEEC--CCCCEE-EEE-CCeEEEEECCCCcEEEEEecCC---------------------------------------
Confidence 899998 566644 444 5679999988776543322100
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CC---------CeEEEEEccCCC
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEISN 265 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---------~~i~iwd~~~~~ 265 (461)
......+++++++|+|+++++. .. ..-.+|.+....
T Consensus 94 ----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 94 ----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp ----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred ----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 0011345678888888876654 21 234555554332
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeE-EEEecCCeEEEEECC--Ccccccc-cccccccccCCCccccccccc
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMR--QSALCDT-HSKLFEEQEAPGTRSFFTEII 341 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~h~ 341 (461)
....+ .......+.++|+|++ +.| ++.+.++.|.+||+. ++..... ....+.. +.
T Consensus 140 ~~~~~--------~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~------------~~ 198 (297)
T 3g4e_A 140 HVKKY--------FDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK------------EE 198 (297)
T ss_dssp CEEEE--------EEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG------------GG
T ss_pred CEEEE--------eeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC------------CC
Confidence 22211 1123456899999998 655 556668999999973 4432110 0111111 11
Q ss_pred cceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe-cCCCEEEEec
Q 012535 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGS 417 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~ 417 (461)
.....++++++|++.++.. .+.|..||..+ ++.+..+..+...+ ++++|. |+++.|..++
T Consensus 199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CEEEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEE
T ss_pred CCCCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEc
Confidence 4578899999998777765 48899999985 78888887664333 489998 8887665444
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.37 E-value=1.4e-09 Score=100.26 Aligned_cols=268 Identities=11% Similarity=0.112 Sum_probs=156.7
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.....|+|+ +++.++++...++.|++||..++.+........ .+ .++|+++++.+
T Consensus 131 ~~P~~la~d--~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----------------~~-~ia~~~~g~~l------ 185 (409)
T 3hrp_A 131 KYMWGIAAV--GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----------------GG-KPAVTKDKQRV------ 185 (409)
T ss_dssp CCEEEEEEC--STTEEEEEETTTTEEEEEETTTTEEEEEEETCC----------------BC-BCEECTTSSEE------
T ss_pred CCceEEEEe--CCCCEEEEecCCCcEEEEECCCCEEEEeeccCC----------------CC-ceeEecCCCcE------
Confidence 347889998 567777777778999999999887665543211 11 26888998875
Q ss_pred CCCCccccccCCC--cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 193 ASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+++..++ .|.+++ .. ..................+.+++++|++..|..+ .++.|..||..+.... .
T Consensus 186 ------~~~d~~~~~~I~~~d-~~---~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~ 254 (409)
T 3hrp_A 186 ------YSIGWEGTHTVYVYM-KA---SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-L 254 (409)
T ss_dssp ------EEEBSSTTCEEEEEE-GG---GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-E
T ss_pred ------EEEecCCCceEEEEE-cC---CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-E
Confidence 6666555 677666 21 1111111111101144667899999954444446 6889999998754321 1
Q ss_pred eeccCCCCCCCCCcce-E-EEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc-CCCcc--ccccccccce
Q 012535 270 IVDVKPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIASI 344 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v-~-~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~h~~~v 344 (461)
+... ...+....- . .++|+|++..++++-..++.|+.||..... ..+.+.. ..... ..........
T Consensus 255 ~~~~---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P 325 (409)
T 3hrp_A 255 IKQL---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQP 325 (409)
T ss_dssp EEEC---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred Eecc---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCC
Confidence 1000 011122222 3 999999642677777778999999976531 1121111 00000 0000011457
Q ss_pred eEEEEccCCCEEEEec-C-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeE
Q 012535 345 SDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (461)
..++++|+|+++++-. . +.|+.|++.. + .+.++.++.....................+++++++.++++-..+++|
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~-G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I 403 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILD-G-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI 403 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTT-T-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCC-C-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence 8999999999777754 4 8999999763 4 355665552211000000000111223589999999888888888999
Q ss_pred EEEec
Q 012535 423 RVFGC 427 (461)
Q Consensus 423 ~iw~~ 427 (461)
+.+++
T Consensus 404 r~i~~ 408 (409)
T 3hrp_A 404 RKYAV 408 (409)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88875
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.37 E-value=6.8e-10 Score=100.89 Aligned_cols=257 Identities=9% Similarity=-0.037 Sum_probs=148.5
Q ss_pred EEEEcCCCCEEEEee----------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
.++|+|||++|+++. .++.|.+||..+.+..+...- .. . .....+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~--~~---------~---~~~~~g----------- 124 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL--PD---------A---PRFDVG----------- 124 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC--CC---------c---cccccC-----------
Confidence 899999999999886 367899999976553210000 00 0 000001
Q ss_pred ccccceEEEEEeecCCCcEEEEEeC--CCeEEEEEccCCceeEE-eeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
..-..++|+ +||++|+++.. ++.|.++| .+++.... ..... ++.+.|++...
T Consensus 125 ---~~p~~~~~s--pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-------------------~~~~~~~~~~~ 179 (373)
T 2mad_H 125 ---PYSWMNANT--PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-------------------CYHIHPGAPST 179 (373)
T ss_pred ---CCccceEEC--CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-------------------eEEEEeCCCce
Confidence 113578898 67889998874 58899999 98876554 33211 23445555432
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEE-EEeCCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISADDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~d~~i~iwd~~~~~ 265 (461)
+++.+.||.+.+++ . .............+ .+...-.....+.+++..+ +...++.+.+.|+....
T Consensus 180 -----------~~~~~~dg~~~~vd-~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~ 245 (373)
T 2mad_H 180 -----------FYLLCAQGGLAKTD-H-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred -----------EEEEcCCCCEEEEE-C-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence 35666788888888 3 22111000000000 1111111223455655444 34467889999986432
Q ss_pred Cce-eeeccCCC---CCCCCCcceEEEEEeCCCCCeEEEEec----------CCeEEEEECCCcccccccccccccccCC
Q 012535 266 QSF-NIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 266 ~~~-~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
... ..+.+... ...........++++|++ +.++++.. ++.|.++|+.+.+. +..+...
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v----v~~i~~g--- 317 (373)
T 2mad_H 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT----SSQISLG--- 317 (373)
T ss_pred ceEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEE----EEEEECC---
Confidence 211 11111000 000012334558899998 66655443 35899999998875 3444332
Q ss_pred CccccccccccceeEEEEccCCC-EEEEec--CCeEEEEEccCCCCCeeEE
Q 012535 332 GTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~-~l~s~~--d~~i~vwd~~~~~~~~~~~ 379 (461)
....++.|+|||+ ++++++ ++.|.++|+.+ .+.+..+
T Consensus 318 ----------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~i 357 (373)
T 2mad_H 318 ----------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-GDQDQST 357 (373)
T ss_pred ----------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-CCEEeee
Confidence 3478999999999 677765 59999999996 7777663
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=2.2e-10 Score=101.52 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=142.1
Q ss_pred ccccceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccc
Q 012535 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (461)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~----------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT----------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC-----------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC-----------
Confidence 3455677899999998 66777788999999873 321 1222222
Q ss_pred ccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
..+..+++. ++|+++++...++.|.+|+.+ ++.........
T Consensus 86 -~~~~gl~~d--~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~----------------------------------- 126 (305)
T 3dr2_A 86 -AFTNGNAVD--AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA----------------------------------- 126 (305)
T ss_dssp -SCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEECEET-----------------------------------
T ss_pred -CccceeeEC--CCCCEEEEECCCCEEEEECCC-CCEEEEEeccC-----------------------------------
Confidence 448899998 567666555566889999875 44322211100
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE----e-C-------------C
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D 253 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~-~-------------d 253 (461)
......+++++++++|+++++ | . .
T Consensus 127 --------------------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 127 --------------------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp --------------------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred --------------------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 000123445666666666654 2 1 2
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC------CeEEEEECCCccccccccccccc
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
+.|..+|..+++.. .+ . .......++|+|++ +.|+.+... +.|.+||+....... ...+..
T Consensus 169 ~~v~~~d~~~g~~~-~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~--~~~~~~ 235 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQ-RM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHD--RRHFAS 235 (305)
T ss_dssp EEEEEECSSSCCCE-EE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEE--EEEEEC
T ss_pred CeEEEEcCCCCcEE-EE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccC--CeEEEE
Confidence 45666665433322 11 1 22346789999998 777776655 789999987543110 111110
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (461)
. ..+....++++++|++.++. .+.|.+|+.. ++.+..+..+... .+++|+
T Consensus 236 ~-----------~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~ 285 (305)
T 3dr2_A 236 V-----------PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFD 285 (305)
T ss_dssp C-----------SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEEC
T ss_pred C-----------CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEe
Confidence 0 01345678999999965554 4459999984 6777777655432 389999
Q ss_pred cCCCEEEEecCCCeE
Q 012535 408 GDGGRVATGSYSNLF 422 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i 422 (461)
++++.|..++.++..
T Consensus 286 ~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 286 QAQQRLFITGGPCLW 300 (305)
T ss_dssp TTSCEEEEEETTEEE
T ss_pred CCCCEEEEEcCCeEE
Confidence 999888877775433
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=3.6e-11 Score=120.32 Aligned_cols=244 Identities=13% Similarity=0.060 Sum_probs=144.1
Q ss_pred ccceEEEEEcCCCCEEEEeecC-----CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (461)
...+..++|||||++||.++.+ ..|++||+.+++.. . ...+.
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-----------------------~-~~~~~--------- 208 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-----------------------A-DELKW--------- 208 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-----------------------E-EEEEE---------
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-----------------------C-ccCCC---------
Confidence 3478899999999999987654 36999999887631 0 11111
Q ss_pred ccccceEEEEEeecCCCcEEEEEeCCCe--------------EEEEEccCCceeEEeeeecCCCccCCCCCccccccccC
Q 012535 110 EIEEKINKIRWCQSANSALYLLSTNDKT--------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (461)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~--------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (461)
..+..++|+ +| +.|+.++.++. |++|++.++............. ...+.
T Consensus 209 ---~~~~~~~ws--pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----~~~~~------- 271 (741)
T 1yr2_A 209 ---VKFSGLAWL--GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL----PKRGH------- 271 (741)
T ss_dssp ---EESCCCEES--TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC----TTCEE-------
T ss_pred ---ceeccEEEE--CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC----CeEEE-------
Confidence 123578898 55 67777776543 8899987665321111111100 01122
Q ss_pred cceeecCCCcccccccCCCCCccccccC-----CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEE
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGG-----VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (461)
.+.|+|+|+.+ +.... ...|.+|| +..... .+.+.+ ..+...+... ++|+++.|+.
T Consensus 272 ~~~~SpDG~~l------------~~~~~~~~~~~~~l~~~d-~~~~~~----~~~~~l-~~~~~~~~~~-~~~dg~~l~~ 332 (741)
T 1yr2_A 272 GASVSSDGRWV------------VITSSEGTDPVNTVHVAR-VTNGKI----GPVTAL-IPDLKAQWDF-VDGVGDQLWF 332 (741)
T ss_dssp EEEECTTSCEE------------EEEEECTTCSCCEEEEEE-EETTEE----CCCEEE-ECSSSSCEEE-EEEETTEEEE
T ss_pred EEEECCCCCEE------------EEEEEccCCCcceEEEEE-CCCCCC----cccEEe-cCCCCceEEE-EeccCCEEEE
Confidence 67899999986 33332 34788888 433210 101111 2333334444 3488887776
Q ss_pred e-C----CCeEEEEEccCCC-CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECC-Cccccccccc
Q 012535 251 A-D----DLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSK 323 (461)
Q Consensus 251 ~-~----d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 323 (461)
. . ++.|.+||+.+.. ....+ +..+...+..++++ ++ .++++...|+..+||.+. .+.. ..
T Consensus 333 ~s~~~~~~~~l~~~d~~~~~~~~~~l-------~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~----~~ 399 (741)
T 1yr2_A 333 VSGDGAPLKKIVRVDLSGSTPRFDTV-------VPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKP----AG 399 (741)
T ss_dssp EECTTCTTCEEEEEECSSSSCEEEEE-------ECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCE----EE
T ss_pred EECCCCCCCEEEEEeCCCCccccEEE-------ecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCc----ee
Confidence 5 3 4569999987542 22222 22344456778887 44 788888999987777554 2221 22
Q ss_pred ccccccCCCccccccccccceeEEEEccCCCEEEE--ec---CCeEEEEEccC
Q 012535 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RD---YMTLKLWDINM 371 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s--~~---d~~i~vwd~~~ 371 (461)
.+..+. .+.+..+.++|+++.|+. .+ .++|++||+.+
T Consensus 400 ~l~~~~-----------~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 400 AVSLPG-----------IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp ECBCSS-----------SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred eccCCC-----------CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 232211 156889999999876553 22 28999999975
No 206
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.34 E-value=1.6e-10 Score=102.00 Aligned_cols=195 Identities=11% Similarity=-0.005 Sum_probs=126.4
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
+++|+|+|+.+ ++++..++.|..|+ . +.. ...+ ..+...+.+++++++++++++. .++
T Consensus 32 g~~~d~~g~~l-----------~~~~~~~~~i~~~~-~---~~~-----~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 32 GPVYVPARSAV-----------IFSDVRQNRTWAWS-D---DGQ-----LSPE-MHPSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp EEEEEGGGTEE-----------EEEEGGGTEEEEEE-T---TSC-----EEEE-ESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred CCeEeCCCCEE-----------EEEeCCCCEEEEEE-C---CCC-----eEEE-ECCCCCcceeeECCCCcEEEEecCCC
Confidence 67999999832 37888889999998 2 221 1222 3455678999999999988877 578
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEE----Eec-------------CCeEEEEECCCccc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY----SSS-------------KGSIRLIDMRQSAL 317 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~----~~~-------------dg~i~iwd~~~~~~ 317 (461)
.|.+||..+++.. .+... ........+..++++|+| +++++ |+. .+.|..+|.. ++.
T Consensus 91 ~i~~~d~~~g~~~-~~~~~---~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (296)
T 3e5z_A 91 RLERQREPGGEWE-SIADS---FEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL 164 (296)
T ss_dssp EEEEECSTTCCEE-EEECE---ETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE
T ss_pred eEEEEcCCCCcEE-EEeec---cCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCE
Confidence 9999998655422 21100 001112356789999999 77776 331 3456666554 321
Q ss_pred ccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCC---eeEEeeccCccccccccc
Q 012535 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLY 393 (461)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~ 393 (461)
..+... ......++|+|+|+.|++.. ++.|++|++...+.. ...+..+....
T Consensus 165 -----~~~~~~------------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p------- 220 (296)
T 3e5z_A 165 -----SAPIRD------------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT------- 220 (296)
T ss_dssp -----EEEECC------------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC-------
T ss_pred -----EEeecC------------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC-------
Confidence 222211 14578899999999986555 489999999732443 22221111111
Q ss_pred cCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
..++++++|+++++. ++.|.+|+.+ ++.
T Consensus 221 --------~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 221 --------DGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp --------CSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred --------CeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 379999999977766 7899999987 443
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=9e-11 Score=105.70 Aligned_cols=216 Identities=12% Similarity=0.122 Sum_probs=132.6
Q ss_pred cccccCCceeeecccccc-CCcccccccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccC
Q 012535 8 SEAAAQPLEWKFSQVFGE-RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSR 86 (461)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~-~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
++..++..++|+..-... +...+.+ ....++.+++++...++++|+.+ .+++|++++.+..
T Consensus 10 ~~~~ted~~Fk~l~~~~~~~~~~~~l-~~~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~---------------- 71 (388)
T 1xip_A 10 PTETSEDFGFKFLGQKQILPSFNEKL-PFASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH---------------- 71 (388)
T ss_dssp CEEEESSCEEEEEEEEECSCCCTTCC-CSSCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH----------------
T ss_pred CceeccccceEECCccccccCccccC-CcccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh----------------
Confidence 455677788887532110 0111112 23379999999999999999988 4666997643200
Q ss_pred CccccccccccCCCcchhhccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCC
Q 012535 87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (461)
Q Consensus 87 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (461)
+..-..++.......+.. |+.|+| ++.+|+++ .++.|++||+.+.......
T Consensus 72 ---------~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~-------------- 122 (388)
T 1xip_A 72 ---------ITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTV-------------- 122 (388)
T ss_dssp ---------HHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEE--------------
T ss_pred ---------hccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCcc--------------
Confidence 000000000001112225 999999 46688888 8899999998765422211
Q ss_pred ccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCC
Q 012535 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (461)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (461)
..|...+.++.+.+..
T Consensus 123 ---------------------------------------------------------------~~~~~~v~~i~~~~p~- 138 (388)
T 1xip_A 123 ---------------------------------------------------------------TSFEKPVFQLKNVNNT- 138 (388)
T ss_dssp ---------------------------------------------------------------EECSSCEEEEEECSSE-
T ss_pred ---------------------------------------------------------------ceeecceeeEEecCCC-
Confidence 1111223344444332
Q ss_pred EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccc
Q 012535 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
++++ .||.|.+||+...... . +...|++++|+|+| ++.|..||.+++|+........ ..++
T Consensus 139 -~av~~~dG~L~v~dl~~~~~~-~-----------~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I 200 (388)
T 1xip_A 139 -LVILNSVNDLSALDLRTKSTK-Q-----------LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEF 200 (388)
T ss_dssp -EEEEETTSEEEEEETTTCCEE-E-----------EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEE
T ss_pred -EEEEECCCCEEEEEccCCccc-c-----------ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccc--ccee
Confidence 6666 8999999999854422 1 45689999999998 6789999999999887655210 0122
Q ss_pred ccccCCCcccccc---ccccceeEEEEccCCCEEEE
Q 012535 326 EEQEAPGTRSFFT---EIIASISDIKFARNGRHILS 358 (461)
Q Consensus 326 ~~~~~~~~~~~~~---~h~~~v~~l~~s~~g~~l~s 358 (461)
..+. .+. +|...|.++.|.++++++++
T Consensus 201 ~~Pp------~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 201 SLPS------ELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CCCH------HHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc------ccccccCCCeeEEEEEEecCCeEEEE
Confidence 1110 011 24478999999999999997
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.33 E-value=2.2e-10 Score=113.77 Aligned_cols=192 Identities=9% Similarity=-0.039 Sum_probs=121.8
Q ss_pred cceeecCCCcccccccCCCCCccc-----cccCCCcEEeeeeecccCccccceeeEeeecccccc--eeeEEeCCCCCEE
Q 012535 176 PKSYMANGGCGERNFGCASNDSSF-----PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH--INSISNNSDGETF 248 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l 248 (461)
.++|+|||+.+ + .|+.+..|++|| +...+... ..+... ...++|+|+|+.|
T Consensus 125 ~~~~SPDG~~l------------a~~~~~~G~~~~~i~v~d-l~tg~~~~---------~~~~~~~~~~~~~wspDg~~l 182 (695)
T 2bkl_A 125 TWAVSWDGKKV------------AFAQKPNAADEAVLHVID-VDSGEWSK---------VDVIEGGKYATPKWTPDSKGF 182 (695)
T ss_dssp EEEECTTSSEE------------EEEEEETTCSCCEEEEEE-TTTCCBCS---------SCCBSCCTTCCCEECTTSSEE
T ss_pred EEEECCCCCEE------------EEEECCCCCceEEEEEEE-CCCCCCcC---------CcccCcccccceEEecCCCEE
Confidence 67999999986 4 556678999999 54332210 011112 2678999999999
Q ss_pred EEe-CCCe-------------EEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC----eEEEE
Q 012535 249 ISA-DDLR-------------INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLI 310 (461)
Q Consensus 249 ~~~-~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----~i~iw 310 (461)
+.+ .+.. |++|++.+......++ .....+...+..+.|+|+| ++|+.++.++ .|.+|
T Consensus 183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv----~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV----HERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE----ECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEE
T ss_pred EEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE----EecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEE
Confidence 887 5554 9999998665321111 0233455678899999999 7777777665 66777
Q ss_pred ECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec----CCeEEEEEccCCCCC--eeEEeecc-
Q 012535 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP--VATFQVHE- 383 (461)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~----d~~i~vwd~~~~~~~--~~~~~~~~- 383 (461)
|..++. ...+..+. ..+....+ ++|.+++.++ ++.|.+||+.. +.. ...+..+.
T Consensus 258 ~~~~~~-----~~~l~~~~------------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 258 RPGEKD-----FRLLVKGV------------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDS 318 (695)
T ss_dssp CTTCSS-----CEEEEECS------------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCS
T ss_pred cCCCCc-----eEEeecCC------------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCC
Confidence 654443 22232222 34555556 6666444443 37899999875 432 23443332
Q ss_pred CccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
... +..++|+ ++.++++...|+..+||.+.
T Consensus 319 ~~~--------------l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 319 SAS--------------LLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp SCE--------------EEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCe--------------EEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 211 2367887 77888899999988888765
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=9.5e-10 Score=101.40 Aligned_cols=260 Identities=9% Similarity=-0.041 Sum_probs=149.7
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
.....|+|+++|+++++...++.|++||..++... ...... ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------~~~~~~-------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------TVHPGF-------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------EEEETC-------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------EeeccC-------------CCC
Confidence 46889999999998887777899999998765421 111111 223
Q ss_pred EEEEEeecCCCcEEEEEeCCC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 116 NKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
. ++|+ +++..++++..++ .|.+|+...+............ .. ..+.+++++|++..+
T Consensus 175 ~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~----~~-------~~p~~iav~p~~g~l------- 233 (409)
T 3hrp_A 175 K-PAVT--KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST----FS-------GKIGAVALDETEEWL------- 233 (409)
T ss_dssp B-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT----SC-------SCCCBCEECTTSSEE-------
T ss_pred c-eeEe--cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch----hc-------CCcEEEEEeCCCCeE-------
Confidence 4 8888 5577888887765 7888888765543222110000 01 112278889944433
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccce-e-eEEeCCC-CCEEEEe-CCCeEEEEEccCCCCcee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI-N-SISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~-~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (461)
+.+..++.|..|| ..... ..........++...- . .++|+|+ +.++++- .++.|+.|+.... ...
T Consensus 234 -----yv~d~~~~I~~~d-~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~ 302 (409)
T 3hrp_A 234 -----YFVDSNKNFGRFN-VKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEW 302 (409)
T ss_dssp -----EEECTTCEEEEEE-TTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEE
T ss_pred -----EEEECCCcEEEEE-CCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEE
Confidence 4466678898888 32211 1100000012222222 3 8999996 5555554 6899999987632 211
Q ss_pred eeccC-CCCC------CCCCcceEEEEEeCCCCCeEEEEe-cCCeEEEEECCCccccccccccccccc-CCCcc--cccc
Q 012535 270 IVDVK-PANM------EDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFT 338 (461)
Q Consensus 270 ~~~~~-~~~~------~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~ 338 (461)
+.... .... ...-.....++++|++ +++++-. .++.|+.||+.++.. .++.++. ..... ....
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~~ 376 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPLE 376 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTTT
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChhc
Confidence 11100 0000 0012347899999999 7777777 789999999877653 3332220 00000 0000
Q ss_pred ccccceeEEEEccCCCEEEEec-CCeEEEEEc
Q 012535 339 EIIASISDIKFARNGRHILSRD-YMTLKLWDI 369 (461)
Q Consensus 339 ~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~ 369 (461)
........++++++|.++++-. .+.|+.+++
T Consensus 377 ~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 377 ATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1124688999999987777654 488888765
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.28 E-value=7e-10 Score=101.37 Aligned_cols=257 Identities=10% Similarity=0.078 Sum_probs=148.4
Q ss_pred EEEEcCCCCEEEEee----------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCC-Ccchhhccc
Q 012535 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 108 (461)
.++++|||++|+++. .++.|.++|..+.+.. ..+.-- ...
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv-----------------------~~I~v~g~~r------ 172 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPR------ 172 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTCCC------
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE-----------------------EEEECCCccc------
Confidence 899999999888876 3678999999887532 111100 000
Q ss_pred cccccceEEEEEeecCCCcEEEEEeC--CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
.........++|+ +|+++++++.. ++.|.+.|+.+++....+.... +....|++...
T Consensus 173 ~~~g~~P~~~~~s--pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-------------------~~~~~p~g~~~ 231 (426)
T 3c75_H 173 FLVGTYQWMNALT--PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-------------------CYHIFPASPTV 231 (426)
T ss_dssp CCBSCCGGGSEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-------------------EEEEEEEETTE
T ss_pred cccCCCcceEEEc--CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-------------------ceeeccCCCcE
Confidence 0000113467888 67889998864 6899999999998776655421 11223333221
Q ss_pred cccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC
Q 012535 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (461)
+++.+.||.+.+.+ ....... ......+..+.......+.+.+++..++.. ..+.+.+.|.....
T Consensus 232 -----------~v~~~~dG~~~~V~-~~~~~v~--~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 232 -----------FYMNCRDGSLARVD-FADGETK--VTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp -----------EEEEETTSSEEEEE-CCTTCCE--EEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred -----------EEEEcCCCCEEEEE-CCCCcEE--EEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence 24444555555555 2111110 000001101111111235678887776665 67899999986433
Q ss_pred Cce-eeeccCC-CCCC--CCCcceEEEEEeCCCCCeEEEEec----------CCeEEEEECCCcccccccccccccccCC
Q 012535 266 QSF-NIVDVKP-ANME--DLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 266 ~~~-~~~~~~~-~~~~--~~~~~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
... ..+.+.. .... ........++++|++ +.+++... ++.|.++|+.+.+. +..+...
T Consensus 298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv----v~~I~vg--- 369 (426)
T 3c75_H 298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGER----INKIELG--- 369 (426)
T ss_dssp EEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEE---
T ss_pred eEEeeeeeeccccccccccccCCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCCCeE----EEEEECC---
Confidence 111 0000000 0000 011222347899998 55554432 35799999999876 4444433
Q ss_pred CccccccccccceeEEEEccCCC-EEEEec--CCeEEEEEccCCCCCeeEE
Q 012535 332 GTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~-~l~s~~--d~~i~vwd~~~~~~~~~~~ 379 (461)
....++.|+|||+ +++++. ++.|.++|+.+ .+.+..+
T Consensus 370 ----------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI 409 (426)
T 3c75_H 370 ----------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV 409 (426)
T ss_dssp ----------EEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred ----------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence 3478999999999 888865 59999999996 7888776
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.28 E-value=1.3e-08 Score=89.77 Aligned_cols=238 Identities=8% Similarity=0.015 Sum_probs=152.8
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..+.++++. +++..+++...++.|.+|+.. ++..... ... ....+. .+++.++|...
T Consensus 20 ~~p~~i~~d--~~g~l~v~~~~~~~v~~~~~~-~~~~~~~-~~~------~~~~~~-------~i~~~~~g~l~------ 76 (300)
T 2qc5_A 20 SGPYGITSS--EDGKVWFTQHKANKISSLDQS-GRIKEFE-VPT------PDAKVM-------CLIVSSLGDIW------ 76 (300)
T ss_dssp CCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEE-CSS------TTCCEE-------EEEECTTSCEE------
T ss_pred CCcceeeEC--CCCCEEEEcCCCCeEEEECCC-CceEEEE-CCC------CCCcce-------eEEECCCCCEE------
Confidence 458889988 567777776778999999988 6544321 110 011222 67777888753
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
++...++.|..+| . ... ............+.++++.++++++++. .++.|..+|.. ++.. ..
T Consensus 77 ------v~~~~~~~v~~~d-~---~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~- 139 (300)
T 2qc5_A 77 ------FTENGANKIGKLS-K---KGG----FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY- 139 (300)
T ss_dssp ------EEETTTTEEEEEC-T---TSC----EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE-
T ss_pred ------EEecCCCeEEEEC-C---CCC----eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec-
Confidence 5555567888887 2 211 1111112234668899999999988887 58899999876 3322 11
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
.+......+..+++++++ ++.++...++.|..||. .++.. .+.... +...+.++++++
T Consensus 140 -----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~----------~~~~~~~i~~d~ 197 (300)
T 2qc5_A 140 -----DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPLPT----------NAAAPVGITSGN 197 (300)
T ss_dssp -----ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEECSS----------TTCCEEEEEECT
T ss_pred -----cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeCCC----------CCCCcceEEECC
Confidence 122234568899999998 76666666889999998 44321 111110 114578999999
Q ss_pred CCCEEEEecC-CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 352 ~g~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+|++.++... +.|.+||.. ++... +..... ...+.+++++++|+++++...++.|..|+..
T Consensus 198 ~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~-------------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 198 DGALWFVEIMGNKIGRITTT--GEISE-YDIPTP-------------NARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TSSEEEEETTTTEEEEECTT--CCEEE-EECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCEEEEccCCCEEEEEcCC--CcEEE-EECCCC-------------CCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 9987777654 789999983 33322 211110 0112489999999988877778999999984
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.26 E-value=9e-10 Score=95.67 Aligned_cols=195 Identities=8% Similarity=0.014 Sum_probs=126.4
Q ss_pred cceeecCCCcccccccCCCCCccc-cccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSF-PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~ 254 (461)
+++++++|... + +...++.|..|+ ..... ...+...+...+.+++++++++++++..++
T Consensus 28 ~i~~~~~g~l~------------v~~~~~~~~i~~~~-~~~~~-------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 87 (270)
T 1rwi_B 28 GVAVDSAGNVY------------VTSEGMYGRVVKLA-TGSTG-------TTVLPFNGLYQPQGLAVDGAGTVYVTDFNN 87 (270)
T ss_dssp EEEECTTCCEE------------EEECSSSCEEEEEC-C------------EECCCCSCCSCCCEEECTTCCEEEEETTT
T ss_pred ceEECCCCCEE------------EEccCCCCcEEEec-CCCcc-------cceEeeCCcCCcceeEECCCCCEEEEcCCC
Confidence 67888888752 5 446778899887 21111 111112333567889999999866665678
Q ss_pred eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc
Q 012535 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
.|.+||...... ..+ .......+..++++|++ +++++...++.|.+|+..+.... ......
T Consensus 88 ~i~~~d~~~~~~-~~~-------~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~------ 148 (270)
T 1rwi_B 88 RVVTLAAGSNNQ-TVL-------PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT----VLPFTG------ 148 (270)
T ss_dssp EEEEECTTCSCC-EEC-------CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCE----ECCCCS------
T ss_pred EEEEEeCCCceE-eee-------ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeE----eecccc------
Confidence 999999874332 111 11123568899999998 77777777899999976543321 110110
Q ss_pred ccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
...+.+++++++|+++++.. ++.|.+||... .........+.. ....++++++|.++
T Consensus 149 ------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~---------------~p~~i~~d~~g~l~ 206 (270)
T 1rwi_B 149 ------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFTDIT---------------APWGIAVDEAGTVY 206 (270)
T ss_dssp ------CCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCSSCC---------------SEEEEEECTTCCEE
T ss_pred ------CCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeecccCCC---------------CceEEEECCCCCEE
Confidence 13578899999998777655 48999999874 322211111101 12489999999888
Q ss_pred EEecCCCeEEEEecCCCC
Q 012535 414 ATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 414 ~s~~~dg~i~iw~~~~~~ 431 (461)
++...++.|.+|+.....
T Consensus 207 v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp EEETTTSCEEEECTTCSC
T ss_pred EEECCCCcEEEEcCCCCc
Confidence 888888999999987653
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=7e-09 Score=92.71 Aligned_cols=144 Identities=10% Similarity=0.054 Sum_probs=87.3
Q ss_pred ceeeEEeCCCCCEEEEe-CC----CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEE-EEecCCeEE
Q 012535 235 HINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIR 308 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~ 308 (461)
.+++++++|+|+++++. .+ +...+|.+. ......+ .........++|+|++ +.|+ +.+.++.|.
T Consensus 135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~--------~~~~~~~~~i~~s~dg-~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKL--------FADISIPNSICFSPDG-TTGYFVDTKVNRLM 204 (326)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEE--------EEEESSEEEEEECTTS-CEEEEEETTTCEEE
T ss_pred CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEe--------eCCCcccCCeEEcCCC-CEEEEEECCCCEEE
Confidence 46678889998877655 22 223444443 2222111 1122346789999998 6554 445578999
Q ss_pred EEECC--Cc-ccccc-cccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeecc
Q 012535 309 LIDMR--QS-ALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 309 iwd~~--~~-~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
+||+. ++ ..... ....+.. .......++++++|.+.++.. .+.|.+||.. ++.+..+..+.
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~------------~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~ 270 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTG------------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPG 270 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTT------------SSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSC
T ss_pred EEEcccccCCcccCceEEEECCC------------CCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECCC
Confidence 99986 44 32110 0111111 114467899999998777754 4889999983 66666666544
Q ss_pred CccccccccccCCCccceeeEEEe-cCCCEEEEec
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGS 417 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~ 417 (461)
..+ .+++|+ ++++.|+.++
T Consensus 271 ~~~---------------~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 271 KQT---------------TCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SBE---------------EEEEEESTTSCEEEEEE
T ss_pred CCc---------------EEEEEecCCCCEEEEEe
Confidence 322 489998 8887665444
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=1.8e-09 Score=107.00 Aligned_cols=245 Identities=9% Similarity=0.036 Sum_probs=143.0
Q ss_pred cceEEEEEeecCCCcEEEEEe-----CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccc
Q 012535 113 EKINKIRWCQSANSALYLLST-----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 187 (461)
..+..++|| +||++++.+. ...+|++||+.+++.......... . .+++|+ ||+.+
T Consensus 129 ~~l~~~~~S--pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k---------~-------~~~~Ws-Dg~~l- 188 (693)
T 3iuj_A 129 TALDQLSFS--RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVK---------F-------SGISWL-GNEGF- 188 (693)
T ss_dssp CEEEEEEEC--TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEE---------S-------CCCEEE-TTTEE-
T ss_pred EEEEEEEEC--CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCce---------e-------ccEEEe-CCCEE-
Confidence 458888998 6788887542 335799999999886543211110 0 167999 99875
Q ss_pred ccccCCCCCccccccCC-------------CcEEeeeeecccCccccceeeEeeecc-cccceeeEEeCCCCCEEEEe--
Q 012535 188 RNFGCASNDSSFPPGGV-------------SSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-- 251 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~-------------~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-- 251 (461)
+.+..+ ..|.+|+ +..... ........ .. |......+.|+|+|++|+..
T Consensus 189 -----------~y~~~~~~~~~~~~~~~~~~~v~~~~-lgt~~~--~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~ 253 (693)
T 3iuj_A 189 -----------FYSSYDKPDGSELSARTDQHKVYFHR-LGTAQE--DDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAA 253 (693)
T ss_dssp -----------EEEESSCCC-------CCCCEEEEEE-TTSCGG--GCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred -----------EEEEecCcccccccccCCCcEEEEEE-CCCCcc--cceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEc
Confidence 433333 3477777 322111 11111111 22 34456788999999988653
Q ss_pred C---CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC---CeEEEEECCCccccccccccc
Q 012535 252 D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 252 ~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~ 325 (461)
. .+.|.++|+.++...... +..+....... +++++..+++....+ +.|..+|+.++... ....+
T Consensus 254 ~~~~~~~i~~~d~~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l 323 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDL 323 (693)
T ss_dssp SSSSCCEEEEEETTSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEE
T ss_pred cCCCCcEEEEEECCCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEE
Confidence 2 358999999865433221 22334444444 666663455554443 67999999876421 01223
Q ss_pred ccccCCCccccccccccceeEEEEccCCCEEEEec--C--CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccce
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (461)
..+. ..+. .|++++++|+... + ..|++||+. +.....+...... .+
T Consensus 324 ~~~~------------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~--------------~~ 373 (693)
T 3iuj_A 324 IPER------------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG--------------SV 373 (693)
T ss_dssp ECCC------------SSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS--------------EE
T ss_pred ecCC------------CCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc--------------eE
Confidence 2222 3343 8999999888753 3 378888886 3444444322110 01
Q ss_pred eeEEEecCCCEEEEecCC----CeEEEEecCCCCc
Q 012535 402 FECCLSGDGGRVATGSYS----NLFRVFGCSEGSA 432 (461)
Q Consensus 402 ~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~~ 432 (461)
..+.++++++.|+....+ +.|+.||+.+++.
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 256677888766654443 8999999987753
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=5.2e-10 Score=100.75 Aligned_cols=141 Identities=8% Similarity=0.061 Sum_probs=96.7
Q ss_pred cccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
+.. |..++| ++++|+++.++.|++||+++...... ...+...+.++.+.+. -++++..||.|.+||
T Consensus 87 lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~d 152 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQLKNVNN---TLVILNSVNDLSALD 152 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEEEECSS---EEEEEETTSEEEEEE
T ss_pred CCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCc--------cceeecceeeEEecCC---CEEEEECCCCEEEEE
Confidence 345 899999 99999999889999999986654322 2334556777777654 388889999999999
Q ss_pred CCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCC--eeEEeeccCccccc
Q 012535 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP--VATFQVHEHLRPKL 389 (461)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~ 389 (461)
+..+... . . ...|++++|||+| ..+...||++++|+... .+. ..++.....
T Consensus 153 l~~~~~~----~----~------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~----- 205 (388)
T 1xip_A 153 LRTKSTK----Q----L------------AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSE----- 205 (388)
T ss_dssp TTTCCEE----E----E------------EESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEEECCCHH-----
T ss_pred ccCCccc----c----c------------cCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccceecCCcc-----
Confidence 9876531 1 1 1469999999999 44445579999998874 332 344421100
Q ss_pred ccccc-CCCccceeeEEEecCCCEEEE
Q 012535 390 CDLYE-NDSIFDKFECCLSGDGGRVAT 415 (461)
Q Consensus 390 ~~~~~-~~~~~~v~~~~~s~~~~~l~s 415 (461)
+.+ .+.-..|.++.|.+++.+|++
T Consensus 206 --~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 206 --LEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --HHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --cccccCCCeeEEEEEEecCCeEEEE
Confidence 000 001123569999999999886
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=5e-09 Score=94.16 Aligned_cols=258 Identities=9% Similarity=0.011 Sum_probs=145.1
Q ss_pred EEEEeecCCCcEEEEEe----------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcc
Q 012535 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 186 (461)
.+.++ +|+++++++. .+++|.+||+.+++............... ...|..++++|+|+.+
T Consensus 69 ~i~~s--pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~--------g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVAG--HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV--------GPRVHIIGNCASSACL 138 (368)
T ss_dssp EEEEC--TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB--------SCCTTSEEECTTSSCE
T ss_pred ceEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc--------CCCcceEEEcCCCCEE
Confidence 68998 6677888875 47899999999998877766431100000 0012278999999986
Q ss_pred cccccCCCCCccccccC--CCcEEe--eeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEE
Q 012535 187 ERNFGCASNDSSFPPGG--VSSLRL--PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 260 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd 260 (461)
+++.. +..+.+ +| ... .+....+. ++.+.|+++....+ .|+.+.+.|
T Consensus 139 ------------yVan~~~~~~v~V~~iD-~~t---------v~~i~v~~-----~~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 139 ------------LFFLFGSSAAAGLSVPG-ASD---------DQLTKSAS-----CFHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ------------EEEECSSSCEEEEEETT-TEE---------EEEEECSS-----CCCCEEEETTEEECCCCTTSCEEEE
T ss_pred ------------EEEccCCCCeEEEEEEc-hhh---------ceEEECCC-----ceEEccCCCeEEEEEcCCCCEEEEE
Confidence 55543 456887 77 222 11110111 12234554433333 688888888
Q ss_pred ccC----CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccc
Q 012535 261 LEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 336 (461)
Q Consensus 261 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (461)
+.+ ........ . ..+.-...+. . .+++ ..++..+. +.+.+.|........ +..+...........
T Consensus 192 ~~~~~~~~~~v~~~~--t-~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v--~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 192 LAAAPAAAGIVGAQC--T-GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATM--KAAIDGNESGRKADN 260 (368)
T ss_dssp CCSSCCCCEECCCCS--C-TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEE--ECCCCSSCTHHHHTT
T ss_pred CccccccCCeEEEEe--e-eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceE--EEEEEeccccccccc
Confidence 875 11111000 0 0111112222 3 6666 55555556 999999986532100 111110000000000
Q ss_pred ccccccceeEEEEccCCCEEEEe-c-C--------CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEE
Q 012535 337 FTEIIASISDIKFARNGRHILSR-D-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (461)
Q Consensus 337 ~~~h~~~v~~l~~s~~g~~l~s~-~-d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (461)
+ .......+.|+||++.++.+ . . +.+.++|+.+ .+.+..+...... ..++|
T Consensus 261 ~--~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~ 321 (368)
T 1mda_H 261 F--RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIA 321 (368)
T ss_dssp E--EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEE
T ss_pred c--ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEE
Confidence 0 00122236899999888764 2 2 3566999997 7778777665533 38999
Q ss_pred ecCCC-EEEEec-CCCeEEEEecCCCCccceeeccCCC
Q 012535 407 SGDGG-RVATGS-YSNLFRVFGCSEGSAESTTLEASKN 442 (461)
Q Consensus 407 s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~ 442 (461)
+|||+ ++++.. .++.|.++|+.+++.. ..+.....
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv-~~I~vg~~ 358 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQDQ-SSVELDKG 358 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEEE-EECCCCSC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcEE-EEEECCCC
Confidence 99998 456666 5999999999998766 44444433
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.15 E-value=6.6e-09 Score=93.63 Aligned_cols=282 Identities=9% Similarity=-0.031 Sum_probs=152.8
Q ss_pred cceEEEEEcCCCCEEEEee--cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
..+..++++++|+++++.. .++.++||.+.+++.. ++ |... .....|. .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--------------~~-p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--------------PF-PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--------------ES-CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--------------cC-CCcc--cCcccce------------e
Confidence 5789999999999988864 2344666766532210 00 0000 0112233 5
Q ss_pred ceEEEEEeecCCCcEEEEEeC-----CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
.+..|++. ++++++++-.. ++.|.+||+.+++............ .....+..+++++++..+
T Consensus 68 ~p~gv~~d--~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---------~~~~~~~~v~vd~~~g~~-- 134 (343)
T 2qe8_A 68 TVLGIKSD--GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---------LSNSFVNDLAVDLIHNFV-- 134 (343)
T ss_dssp CEEEEEEC--SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---------CTTCCCCEEEEETTTTEE--
T ss_pred EeeEEEEc--CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---------ccccccceEEEecCCCEE--
Confidence 58999998 45655555433 6889999999888665554321100 000112267788765442
Q ss_pred cccCCCCCcccccc---CCCcEEeeeeecccCccccceeeEeeeccccccee-eEEeCCCCCEEEEe-CCCeEEEEEccC
Q 012535 189 NFGCASNDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNSDGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 189 ~~~~~~~~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (461)
+++.. .++.|.+|| +... ...+. ..+|..... ...+.+++..+.+. .++.+..|.
T Consensus 135 ---------yvtd~~~~~~~~i~v~d-~~~g------~~~r~-~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--- 194 (343)
T 2qe8_A 135 ---------YISDPAPDDKAALIRVD-LQTG------LAARV-LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--- 194 (343)
T ss_dssp ---------EEEECCSGGGCEEEEEE-TTTC------CEEEE-CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---
T ss_pred ---------EEEcCccCCCCeEEEEE-CCCC------CEEEE-ecCCCcccccccceeECCEEEEeccCCCceecee---
Confidence 24433 578889888 3211 11121 133211110 13344455555554 455553331
Q ss_pred CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccc-----c-cccccccccCCCccccc
Q 012535 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD-----T-HSKLFEEQEAPGTRSFF 337 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~-~~~~~~~~~~~~~~~~~ 337 (461)
..+..++|+|++ +.|+++..++. ++|.+....... . ....+. .
T Consensus 195 -------------------~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~----------~ 243 (343)
T 2qe8_A 195 -------------------LGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIE----------R 243 (343)
T ss_dssp -------------------CCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCE----------E
T ss_pred -------------------cccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceE----------e
Confidence 235789999998 88887776663 444433211100 0 000000 0
Q ss_pred cccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEe
Q 012535 338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (461)
Q Consensus 338 ~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (461)
.++......++++++|.++++.. .+.|.+||... ++. ..+...... ....+++|.+++.++++.
T Consensus 244 ~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~-~~~~~~~~~-------------~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 244 YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD-RAY-KLLVTDEKL-------------SWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT-TEE-EEEEECGGG-------------SCEEEEEECTTSCEEEEE
T ss_pred cccCCCCceEEECCCCCEEEEccCCCeEEEEECCC-CCE-EEEEECCce-------------ecCCeeEECCCCcEEEEe
Confidence 11224567899999998888865 48999999843 432 333222110 012489999999888877
Q ss_pred cCCCeEEEE
Q 012535 417 SYSNLFRVF 425 (461)
Q Consensus 417 ~~dg~i~iw 425 (461)
+..+.+-+|
T Consensus 309 ~~~~~~~~f 317 (343)
T 2qe8_A 309 NQLHHSAPL 317 (343)
T ss_dssp CCGGGSGGG
T ss_pred Ccccccccc
Confidence 655544333
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=4.2e-08 Score=88.66 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=80.7
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEE--eCCCCCeEEEEe------cCCeEEEEECCCcccccccccc
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSS------SKGSIRLIDMRQSALCDTHSKL 324 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 324 (461)
+.+|.+||+.+. .....++ +.........+.| +|++ +++++++ .+++|.+|....+.... ...
T Consensus 227 ~d~V~v~D~~~~-k~~~tI~-----vg~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~--~~v 297 (462)
T 2ece_A 227 GNRIHFWDLRKR-KRIHSLT-----LGEENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWNA--EKV 297 (462)
T ss_dssp CCEEEEEETTTT-EEEEEEE-----SCTTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEEE--EEE
T ss_pred CCEEEEEECCCC-cEeeEEe-----cCCCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCceeE--EEE
Confidence 689999999864 3333221 2112233455555 9998 6666655 56788877665443211 111
Q ss_pred ccccc--CCCcc----ccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCC--CCeeEEeeccCcccccccccc
Q 012535 325 FEEQE--APGTR----SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYE 394 (461)
Q Consensus 325 ~~~~~--~~~~~----~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 394 (461)
+.... ..... ..+.+-......+.+|+||++|.+++ .+.|.+||+...+ +.+..+..... ....... .
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~-~~~~~~~-~ 375 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI-FHRADHP-A 375 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT-TTCBCCT-T
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe-ecccccc-c
Confidence 11100 00000 00111114578899999999999976 3899999996322 22333322210 0000000 0
Q ss_pred CCCc-cceeeEEEecCCCEEEEec
Q 012535 395 NDSI-FDKFECCLSGDGGRVATGS 417 (461)
Q Consensus 395 ~~~~-~~v~~~~~s~~~~~l~s~~ 417 (461)
...+ ..-..++++|||++|+++.
T Consensus 376 G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 376 GHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccCCCCCCEEEEcCCCCEEEEEc
Confidence 0000 0002799999999998877
No 219
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.08 E-value=3.1e-08 Score=87.94 Aligned_cols=208 Identities=6% Similarity=0.020 Sum_probs=125.3
Q ss_pred cccceEEEEEcCC-CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccc-cccccCCCcchhhcccccc
Q 012535 34 EVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY-KTEFQSHEPEFDYLKSLEI 111 (461)
Q Consensus 34 h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~ 111 (461)
+...+.+++++++ |+++++. ..+.|.+||.. ++.. . + .....+..
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~----~----------------~~~~~~~~~~----------- 115 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFE----E----------------IAKKDSEGRR----------- 115 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEE----E----------------CCSBCTTSCB-----------
T ss_pred CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEE----E----------------EEeccCCCcc-----------
Confidence 4467899999999 7655544 34478899977 4311 0 0 00000110
Q ss_pred ccceEEEEEeecCCCcEEEEEeCC---------------CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCc
Q 012535 112 EEKINKIRWCQSANSALYLLSTND---------------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (461)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (461)
...+.++++. +++.++++...+ +.|..|+.. ++......... .+..
T Consensus 116 ~~~~~~i~~d--~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~----------------~~~~ 176 (314)
T 1pjx_A 116 MQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ----------------FPNG 176 (314)
T ss_dssp CBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES----------------SEEE
T ss_pred ccCCcCEEEC--CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC----------------Ccce
Confidence 0347899998 567677666554 566666655 44433322110 1116
Q ss_pred ceee----cCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccc-cceeeEEeCCCCCEEEEe
Q 012535 177 KSYM----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA 251 (461)
Q Consensus 177 ~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~ 251 (461)
++++ |+++.+ +++...++.|.+|+ +.............. ...+. ..+..++++++|+++++.
T Consensus 177 i~~~~~~d~dg~~l-----------~v~~~~~~~i~~~~-~~~~g~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 177 IAVRHMNDGRPYQL-----------IVAETPTKKLWSYD-IKGPAKIENKKVWGH-IPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEEECTTSCEEEE-----------EEEETTTTEEEEEE-EEETTEEEEEEEEEE-CCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EEEecccCCCCCEE-----------EEEECCCCeEEEEE-CCCCCccccceEEEE-CCCCCCCCCCceEECCCCCEEEEE
Confidence 7888 888653 24445678999998 431110000011111 13333 567889999999988887
Q ss_pred -CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCC-eEEEEecCCeEEEEECCCc
Q 012535 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQS 315 (461)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~~~ 315 (461)
.++.|.+||.++++.... +..+...+.+++|+|++ + ++++...++.|..|++...
T Consensus 244 ~~~~~i~~~d~~~g~~~~~--------~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMR--------IRCPFEKPSNLHFKPQT-KTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ETTTEEEEECTTCBSCSEE--------EECSSSCEEEEEECTTS-SEEEEEETTTTEEEEEECSSC
T ss_pred cCCCEEEEEcCCCCcEeEE--------EeCCCCCceeEEECCCC-CEEEEEeCCCCeEEEEeCCCC
Confidence 788999999874443322 22234678999999998 7 4555556789999998653
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.06 E-value=1.6e-08 Score=91.13 Aligned_cols=239 Identities=10% Similarity=0.054 Sum_probs=138.4
Q ss_pred ccccceEEEEEcCCCCEEEEeec-----CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (461)
.|...+.+++|+++|+++++-.. ++.|.+||+.+++... . +.+......+.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~----~-------------~~~~~~~~~~~------- 119 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSR----V-------------IYLPPPITLSN------- 119 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEE----E-------------EECCTTTSCTT-------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEE----E-------------EECChhhcccc-------
Confidence 45678999999999986665443 5789999988765210 0 00000001111
Q ss_pred ccccccceEEEEEeecCCCcEEEEEe---CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 108 SLEIEEKINKIRWCQSANSALYLLST---NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
..++.+++.|. ++..+++-. .++.|.+||+.+++.......+... .+....+.++|.
T Consensus 120 -----~~~~~v~vd~~-~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~--------------~~~~~~~~~~g~ 179 (343)
T 2qe8_A 120 -----SFVNDLAVDLI-HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI--------------APEDIDLVIDGV 179 (343)
T ss_dssp -----CCCCEEEEETT-TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT--------------SCCSCCCEETTE
T ss_pred -----cccceEEEecC-CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc--------------cccccceeECCE
Confidence 34688999842 244445545 6889999999988765544321000 000123444554
Q ss_pred cccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-C-CCeEEEEEcc
Q 012535 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLE 262 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~ 262 (461)
.+ .+...++.++.|. ..+..|+|+|+++.|+.+ . ...+..++..
T Consensus 180 ~~------------~~~~~~g~~~~~~----------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 180 PV------------QIGQPDGTVIRPH----------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EC------------BEECTTSCEECCC----------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred EE------------EeccCCCceecee----------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 42 4445566665543 345789999999988877 4 4455555532
Q ss_pred CCC--Cc--eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccc
Q 012535 263 ISN--QS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (461)
Q Consensus 263 ~~~--~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (461)
... .. .++. ......++......++++++| .++++...++.|.+||..+++. ..+....
T Consensus 226 ~~~~~~~~~~~~~--~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~-----~~~~~~~--------- 288 (343)
T 2qe8_A 226 DLSNLQLTDAELG--SKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAY-----KLLVTDE--------- 288 (343)
T ss_dssp HHTCTTCCHHHHH--TTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEE-----EEEEECG---------
T ss_pred HhcCCCCChhhhh--cceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCE-----EEEEECC---------
Confidence 111 00 0000 000011233456789999998 8889888899999999844542 1111110
Q ss_pred ccccceeEEEEccCCCEEEEecC-CeEEEE
Q 012535 339 EIIASISDIKFARNGRHILSRDY-MTLKLW 367 (461)
Q Consensus 339 ~h~~~v~~l~~s~~g~~l~s~~d-~~i~vw 367 (461)
+...+.+++|.++|+++++.+. +.+.+|
T Consensus 289 -~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 289 -KLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp -GGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred -ceecCCeeEECCCCcEEEEeCcccccccc
Confidence 0145889999999988877654 444333
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.06 E-value=7.8e-09 Score=92.90 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=143.0
Q ss_pred EEEEcCCCCEEEEee----------cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCC-Ccchhhccc
Q 012535 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (461)
Q Consensus 40 ~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 108 (461)
.+.++|||++|+++. .++.|.+||..+++.. ..+... ...+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~----- 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF----- 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSC-----
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCcccc-----
Confidence 799999999998886 3689999999987643 122110 0000
Q ss_pred cccccceEEEEEeecCCCcEEEEEeC--CCeEEE--EEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCC
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (461)
........++++ +||++++++.. +..|.+ +|..+ ........ +....|+|+
T Consensus 121 -~~g~~P~~ia~S--pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-------------------~~~~~p~g~ 175 (368)
T 1mda_H 121 -SVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-------------------CFHIHPGAA 175 (368)
T ss_dssp -CBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-------------------CCCCEEEET
T ss_pred -ccCCCcceEEEc--CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-------------------ceEEccCCC
Confidence 000114568888 67888888864 467888 88877 22222110 123345555
Q ss_pred cccccccCCCCCccccccCCCcEEeeeeeccc---CccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEE
Q 012535 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQ---ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (461)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (461)
.. +++.+.|+.+.+.+ +... ...........+ .-...+. + .+++..++.. . +.+.+.|
T Consensus 176 ~~-----------~~~~~~dg~~~~vd-~~~~~~~~~~v~~~~t~~i-~vg~~P~---~-~~~~~~~~~vs~-~~V~viD 237 (368)
T 1mda_H 176 AT-----------HYLGSCPASLAASD-LAAAPAAAGIVGAQCTGAQ-NCSSQAA---Q-ANYPGMLVWAVA-SSILQGD 237 (368)
T ss_dssp TE-----------EECCCCTTSCEEEE-CCSSCCCCEECCCCSCTTS-CBCSCCE---E-ETTTTEEEECBS-SCCEEEE
T ss_pred eE-----------EEEEcCCCCEEEEE-CccccccCCeEEEEeeeee-eCCCCcc---c-cccCCEEEEEcC-CEEEEEE
Confidence 43 35556677776666 3210 000000000000 1111222 3 4555554444 7 8999999
Q ss_pred ccCCCCce-eeeccCCCC--CCC-CCcceEEEEEeCCCCCeEEEEec---------CCeEEEEECCCccccccccccccc
Q 012535 261 LEISNQSF-NIVDVKPAN--MED-LTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 261 ~~~~~~~~-~~~~~~~~~--~~~-~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
........ ..+.+.... ..+ .......++++|++ +.++.+.. ++.+.++|+.+.+. +..+..
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v----v~~i~v 312 (368)
T 1mda_H 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQT----SGPISN 312 (368)
T ss_dssp CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCE----EECCEE
T ss_pred CCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeE----EEEEEC
Confidence 86432211 111000000 000 11122237899998 66665433 23566999999876 444443
Q ss_pred ccCCCccccccccccceeEEEEccCCCE-EEEec--CCeEEEEEccCCCCCeeEEeeccCc
Q 012535 328 QEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD--YMTLKLWDINMDSGPVATFQVHEHL 385 (461)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~-l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~ 385 (461)
. ....++.|+|||++ +++.. ++.|.++|+.+ .+.+..+.....+
T Consensus 313 g-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 G-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp E-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred C-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 3 34789999999984 44544 69999999997 8888888766554
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.04 E-value=1.2e-08 Score=100.99 Aligned_cols=241 Identities=10% Similarity=0.105 Sum_probs=138.4
Q ss_pred cccceEEEEEcCCCCEEEEee-----cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccc
Q 012535 34 EVDIISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (461)
|...+..++|||||++||.+. .+..|++||+.+++.. ..+...
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~~~~~~------ 174 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------ETPLKD------ 174 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------EEEEEE------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------ccccCC------
Confidence 556799999999999998543 3357999999987621 001100
Q ss_pred cccccceEEEEEeecCCCcEEEEEeCCC-------------eEEEEEccCCcee--EEeeeec-CCCccCCCCCcccccc
Q 012535 109 LEIEEKINKIRWCQSANSALYLLSTNDK-------------TIKLWKVQEKKVK--KVFDWNV-HPEKAAGNGPIFGSHV 172 (461)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~-------------~i~vw~~~~~~~~--~~~~~~~-~~~~~~~~~~v~~~~~ 172 (461)
.....++|+ |++.|+.++.+. .|++|++.++... .+..... ++ ....
T Consensus 175 ----~k~~~~~Ws---Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~------~~~~---- 237 (693)
T 3iuj_A 175 ----VKFSGISWL---GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH------HRYV---- 237 (693)
T ss_dssp ----EESCCCEEE---TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC------CSEE----
T ss_pred ----ceeccEEEe---CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC------eEEE----
Confidence 113567887 456787777664 4899998776432 2222211 10 1112
Q ss_pred ccCcceeecCCCcccccccCCCCCccccc---cCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEE
Q 012535 173 SAIPKSYMANGGCGERNFGCASNDSSFPP---GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (461)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (461)
++.++|+|+.+ +++. +....|.++| +...+. .. ..+ ..+....... +++++..|+
T Consensus 238 ---~~~~SpDg~~l-----------~~~~~~~~~~~~i~~~d-~~~~~~----~~-~~l-~~~~~~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 238 ---GATVTEDDRFL-----------LISAANSTSGNRLYVKD-LSQENA----PL-LTV-QGDLDADVSL-VDNKGSTLY 295 (693)
T ss_dssp ---EEEECTTSCEE-----------EEEEESSSSCCEEEEEE-TTSTTC----CC-EEE-ECSSSSCEEE-EEEETTEEE
T ss_pred ---EEEEcCCCCEE-----------EEEEccCCCCcEEEEEE-CCCCCC----ce-EEE-eCCCCceEEE-EeccCCEEE
Confidence 56899999985 2222 2335788877 432211 11 111 2333444443 566665554
Q ss_pred -Ee-C---CCeEEEEEccCCCCc-eeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CC--eEEEEECCCcccccc
Q 012535 250 -SA-D---DLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDT 320 (461)
Q Consensus 250 -~~-~---d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 320 (461)
.+ . .+.|..+++.+.... .+ .+..+...+. .|++++ +.|+.... ++ .|++||+..+..
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~--~~s~~g-~~lv~~~~~~g~~~l~~~d~~g~~~--- 362 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWR-------DLIPERQQVL--TVHSGS-GYLFAEYMVDATARVEQFDYEGKRV--- 362 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCE-------EEECCCSSCE--EEEEET-TEEEEEEEETTEEEEEEECTTSCEE---
T ss_pred EEECCCCCCCEEEEEeCCCCCccccE-------EEecCCCCEE--EEEEEC-CEEEEEEEECCeeEEEEEECCCCee---
Confidence 44 2 378999999865431 11 1222444444 889988 66655554 54 688999875432
Q ss_pred cccccccccCCCccccccccccceeEEEEccCCCEEEE-ecC----CeEEEEEccC
Q 012535 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY----MTLKLWDINM 371 (461)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s-~~d----~~i~vwd~~~ 371 (461)
..+.... .+.+..+.+++++..|+. .++ +.++.||+.+
T Consensus 363 --~~l~~p~-----------~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 363 --REVALPG-----------LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp --EEECCSS-----------SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred --EEeecCC-----------CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 2222111 145777788888876654 332 8999999874
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.00 E-value=4.7e-08 Score=86.10 Aligned_cols=198 Identities=10% Similarity=0.055 Sum_probs=117.8
Q ss_pred ccccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccc
Q 012535 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (461)
.....+.+++++++|+++++ . ++.|.+||..+++.. .+.......+ .
T Consensus 51 ~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~---------------------~~~~~~~~~~----------~ 97 (297)
T 3g4e_A 51 TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV---------------------VLATVDNDKK----------N 97 (297)
T ss_dssp ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE---------------------EEEECCTTCS----------S
T ss_pred eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE---------------------EEEecCCCCC----------C
Confidence 34577999999999995554 4 567999998765421 1111111110 0
Q ss_pred cceEEEEEeecCCCcEEEEEeC---------CCeEEEEEccC-CceeEEeeeecCCCccCCCCCccccccccCcceeecC
Q 012535 113 EKINKIRWCQSANSALYLLSTN---------DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~---------d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (461)
..++.+++. ++|+++++... ...-.||.+.. ++........ ..+..++|+|+
T Consensus 98 ~~~~di~~d--~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~----------------~~pngi~~spd 159 (297)
T 3g4e_A 98 NRFNDGKVD--PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV----------------DISNGLDWSLD 159 (297)
T ss_dssp EEEEEEEEC--TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE----------------SBEEEEEECTT
T ss_pred CCCCCEEEC--CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc----------------ccccceEEcCC
Confidence 447889998 56776665432 23456666653 3332222111 11227899999
Q ss_pred CCcccccccCCCCCccccccCCCcEEeeeeecccCcccc-ceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEE
Q 012535 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLV-AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (461)
Q Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (461)
++.+ +++...++.|..|+ +........ ......+ ..+...+..++++++|++.++. ..+.|..||
T Consensus 160 g~~l-----------yv~~~~~~~i~~~~-~d~~~G~~~~~~~~~~~-~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 160 HKIF-----------YYIDSLSYSVDAFD-YDLQTGQISNRRSVYKL-EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp SCEE-----------EEEEGGGTEEEEEE-ECTTTCCEEEEEEEEEC-CGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred CCEE-----------EEecCCCCcEEEEe-ccCCCCcccCcEEEEEC-CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 9864 35566678899988 421111111 1111111 2334567889999999888887 788999999
Q ss_pred ccCCCCceeeeccCCCCCCCCCcceEEEEEe-CCCCCeEEEEec
Q 012535 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS 303 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~ 303 (461)
..+++.... +..+...+++++|. |++ +.|++++.
T Consensus 227 ~~tG~~~~~--------i~~p~~~~t~~~f~g~d~-~~L~vt~~ 261 (297)
T 3g4e_A 227 PVTGKRLQT--------VKLPVDKTTSCCFGGKNY-SEMYVTCA 261 (297)
T ss_dssp TTTCCEEEE--------EECSSSBEEEEEEESGGG-CEEEEEEB
T ss_pred CCCceEEEE--------EECCCCCceEEEEeCCCC-CEEEEEcC
Confidence 875553332 22234678999998 887 55554443
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=1.3e-07 Score=93.01 Aligned_cols=175 Identities=10% Similarity=0.079 Sum_probs=105.8
Q ss_pred eeEEeCCCCCEEEEe-CCC-------------------eEEEEEccCCCCceeeeccCCCCCC-CCCcceEEEEEeCCCC
Q 012535 237 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHC 295 (461)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~ 295 (461)
..++++|++..++.+ .++ .|..+|.++++............+. .......-+....+|.
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 357788888888877 443 5899999887766543210000000 0011222333334552
Q ss_pred --CeEEEEecCCeEEEEECCCcccccccccccccccCCC---------------------cccc---ccccccceeEEEE
Q 012535 296 --NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG---------------------TRSF---FTEIIASISDIKF 349 (461)
Q Consensus 296 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------------~~~~---~~~h~~~v~~l~~ 349 (461)
..++.++.+|.++++|..+++.+.. +.....+. .... +.+... -..++|
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~-w~~~a~ 400 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISA----KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN-WHPMSF 400 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEE----EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-SSCCEE
T ss_pred EeeEEEEECCCCEEEEEECCCCCEecc----ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC-CCCceE
Confidence 4788899999999999999987432 11100000 0000 000001 136788
Q ss_pred ccCCCEEEEec--------------------------------------------CCeEEEEEccCCCCCeeEEeeccCc
Q 012535 350 ARNGRHILSRD--------------------------------------------YMTLKLWDINMDSGPVATFQVHEHL 385 (461)
Q Consensus 350 s~~g~~l~s~~--------------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~ 385 (461)
+|++.++++.. .+.|..||+.+ ++.+-.+......
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~ 479 (677)
T 1kb0_A 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW 479 (677)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC
T ss_pred cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC
Confidence 99888777631 16789999986 6666555433211
Q ss_pred cccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+...+..++.+++.++.||.+++||+++++.+
T Consensus 480 ----------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 480 ----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp ----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ----------------cCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 25557778888999999999999999999866
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.97 E-value=6.9e-07 Score=87.98 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=105.1
Q ss_pred eEEeCCCCCEEEEe-CCC-------------------eEEEEEccCCCCceeeeccCCCCCCC--CCcceEEEEEeCCCC
Q 012535 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHC 295 (461)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~ 295 (461)
.++++|+..+++.+ .++ .|..+|.++++........ +...-. ....+.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~~G- 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPIDG- 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeeccCC-
Confidence 57788888888887 565 3999999988766543210 000000 11112222222344
Q ss_pred C---eEEEEecCCeEEEEECCCcccccccccc---cccc------------------cCCCcccccc---ccccceeEEE
Q 012535 296 N---MLAYSSSKGSIRLIDMRQSALCDTHSKL---FEEQ------------------EAPGTRSFFT---EIIASISDIK 348 (461)
Q Consensus 296 ~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~------------------~~~~~~~~~~---~h~~~v~~l~ 348 (461)
+ .++.++.+|.++++|.++++.+...... ...+ ........+. +.. .-..++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~-~w~~~a 395 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH-DWQPMS 395 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS-CSSCCE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc-CCCcce
Confidence 3 7889999999999999999864211000 0000 0000000000 000 123478
Q ss_pred EccCCCEEEEec----------------------------------------------CCeEEEEEccCCCCCeeEEeec
Q 012535 349 FARNGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 349 ~s~~g~~l~s~~----------------------------------------------d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
|+|+..++++.. +|.|..||+.+ ++.+-.+..+
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~ 474 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYV 474 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEES
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCC
Confidence 888877777531 26688899986 7766666554
Q ss_pred cCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.... ...+...+.+++.|+.||.|+.||.++|+++
T Consensus 475 ~~~~----------------~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 475 TIFN----------------GGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp SSCC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCcc----------------CccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4321 3456778889999999999999999999765
No 226
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=1.9e-08 Score=94.13 Aligned_cols=282 Identities=10% Similarity=0.004 Sum_probs=156.6
Q ss_pred CCCCEEEEeec-CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeec
Q 012535 45 KSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (461)
Q Consensus 45 ~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~ 123 (461)
+||++|.+... +++|.+.|+.+.+.. +.+ ++..- .....+++..-
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~--------------------~ii-~ip~g-------------~~phg~~~~~~ 144 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCD--------------------AIL-EIPNA-------------KGIHGLRPQKW 144 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEE--------------------EEE-ECSSC-------------CSEEEEEECCS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEe--------------------eEE-eCCCC-------------CCCcceeeeec
Confidence 38888887765 457999999876521 000 22111 23677887422
Q ss_pred CCCcEEEEEe------------------CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 124 ANSALYLLST------------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 124 ~~~~~l~~~~------------------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
+++.++++++ .++.+.+.|.++.+..........+ ..++.+|+|+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~p----------------d~~~~spdGk~ 208 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNL----------------DNCDADYEGKW 208 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCC----------------CCEEECSSSSE
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCc----------------cceEECCCCCE
Confidence 4567888874 3467999999988776666543221 16788899988
Q ss_pred ccccccCCCCCccccccCCC-cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccC-
Q 012535 186 GERNFGCASNDSSFPPGGVS-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEI- 263 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~- 263 (461)
+ ++.+.+. .....+ . ...........+ . .-....+.++|+.... +.|.+.|.++
T Consensus 209 ~------------~vt~~~se~~~~i~-~---~~~~~~d~v~V~-~----~~~~~~~v~~Gk~~~i---~~V~VID~~~~ 264 (595)
T 1fwx_A 209 A------------FSTSYNSEKGMTLP-E---MTAAEMDHIVVF-N----IAEIEKAIAAGDYQEL---NGVKVVDGRKE 264 (595)
T ss_dssp E------------EEEESCTTCCSSHH-H---HTCCSEEEEEEE-E----HHHHHHHHHHTCSEEE---TTEEEEECSGG
T ss_pred E------------EEEecCcccCcchh-h---ccccccceEEEe-e----ccceeEeccCCCeeEE---CcEEEEeCccc
Confidence 5 4333322 111111 0 000000000000 0 0000112334544333 4599999986
Q ss_pred -CCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccc--------cccccccccccCCCcc
Q 012535 264 -SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--------DTHSKLFEEQEAPGTR 334 (461)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~ 334 (461)
.......+ . -.....++.++|||..+++++..+.+|.++|+.+.+.. .......+..
T Consensus 265 ~~~~~~~~I-------p-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG------ 330 (595)
T 1fwx_A 265 ASSLFTRYI-------P-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG------ 330 (595)
T ss_dssp GCCSSEEEE-------E-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC------
T ss_pred CCceeEEEE-------e-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC------
Confidence 32211111 1 23456799999999445555567899999999865310 0001111111
Q ss_pred ccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCC---------CCCeeEEeeccCccccccccccCCCccceee
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMD---------SGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (461)
.....++|+|+| ++.+.. ++.|.+||+... .+.+.++..|-.+.. .. . -..
T Consensus 331 -------~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh-~~---~------~~g 392 (595)
T 1fwx_A 331 -------LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH-LK---T------VMG 392 (595)
T ss_dssp -------SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-EE---E------TTT
T ss_pred -------CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-ce---e------ccc
Confidence 357889999999 776654 699999999741 345566665543210 00 0 013
Q ss_pred EEEecCCCEEEEec---CCCeE----------EEEecCCCCc
Q 012535 404 CCLSGDGGRVATGS---YSNLF----------RVFGCSEGSA 432 (461)
Q Consensus 404 ~~~s~~~~~l~s~~---~dg~i----------~iw~~~~~~~ 432 (461)
...+|||++|++.. .|+.+ .++|+..++.
T Consensus 393 ~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 393 ETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred eEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 45689999999865 24431 8899966553
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=5.9e-07 Score=80.27 Aligned_cols=219 Identities=11% Similarity=0.033 Sum_probs=129.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..+.+++.++.|..+|.+ ++......... ..+. ++...+++.. +.++.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--------~~~~-------~~~~~~~g~l-------------~vgt~~~ 157 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKK--------AIYA-------TPIVSEDGTI-------------YVGSNDN 157 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSS--------CCCS-------CCEECTTSCE-------------EEECTTS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC--------ceee-------eeEEcCCCEE-------------EEEcCCC
Confidence 3468888889999999988 65443333211 0111 3344445553 6677788
Q ss_pred cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcce
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (461)
.|..+| . +. .....+ ......+.++...+++.+++.. +.|..+| .+++..... ......+
T Consensus 158 ~l~~~d-~---~g----~~~~~~-~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~--------~~~~~~~ 217 (330)
T 3hxj_A 158 YLYAIN-P---DG----TEKWRF-KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNF--------YAGYWTV 217 (330)
T ss_dssp EEEEEC-T---TS----CEEEEE-ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEE--------CCSSCCC
T ss_pred EEEEEC-C---CC----CEeEEE-ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEE--------ccCCcce
Confidence 888888 2 21 111111 2233456777787888876665 8899999 544433321 1233557
Q ss_pred EEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEE
Q 012535 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (461)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~ 365 (461)
.++...+++ .|..++.++.|..+|.. +.. +..+.... ..+..+.+.+++.+.++..++.|.
T Consensus 218 ~~~~~~~~g--~l~v~t~~~gl~~~~~~-g~~----~~~~~~~~------------~~~~~~~~~~~g~l~v~t~~ggl~ 278 (330)
T 3hxj_A 218 TRPAISEDG--TIYVTSLDGHLYAINPD-GTE----KWRFKTGK------------RIESSPVIGNTDTIYFGSYDGHLY 278 (330)
T ss_dssp SCCEECTTS--CEEEEETTTEEEEECTT-SCE----EEEEECSS------------CCCSCCEECTTSCEEEECTTCEEE
T ss_pred eceEECCCC--eEEEEcCCCeEEEECCC-CCE----eEEeeCCC------------CccccceEcCCCeEEEecCCCCEE
Confidence 788888886 46667778888888853 332 22222211 223345566677666555568899
Q ss_pred EEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 366 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
.+|. + ++.+..+......+ .++...++++ |..|+.+|.+++...+..
T Consensus 279 ~~d~-~-g~~~~~~~~~~~~~---------------~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 279 AINP-D-GTEKWNFETGSWII---------------ATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EECT-T-SCEEEEEECSSCCC---------------SCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EECC-C-CcEEEEEEcCCccc---------------cceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 9985 3 56655554332222 2666667776 455788999998876643
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=4e-07 Score=89.50 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=62.2
Q ss_pred CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeecc
Q 012535 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (461)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~ 383 (461)
|.|..||+.+++..++ +... .++....+..++.+++.++ ++.+++||.++ ++.+..+....
T Consensus 457 g~l~A~D~~tG~~~W~----~~~~-------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWS----VEHV-------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEE----EEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEee----cCCC-------------CCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCC
Confidence 7899999999886433 2211 2234445666777787776 69999999997 89998887654
Q ss_pred CccccccccccCCCccceeeEEEecCCCEEEEe-cC----------------CCeEEEEecCC
Q 012535 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SY----------------SNLFRVFGCSE 429 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~----------------dg~i~iw~~~~ 429 (461)
.... .-+.+..+|+.++.. +. .+.+..|.+..
T Consensus 519 ~~~~--------------~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 519 GVVA--------------APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCCS--------------CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred Cccc--------------CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 3321 256777888744432 21 46888888874
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=2.3e-09 Score=97.49 Aligned_cols=144 Identities=8% Similarity=0.044 Sum_probs=70.8
Q ss_pred CCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceE-EEEEeCCCCCeEEEEecCCeEEEEECCCcccccc
Q 012535 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (461)
Q Consensus 243 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 320 (461)
.++..++++ .|+.|+.||.++++..... ... ....+. +..+. .+ ..+++++.|+.|+.||.++++..
T Consensus 47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~------~~~-~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~-- 115 (369)
T 2hz6_A 47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKL------PFT-IPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQ-- 115 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CCSEEC------SCC-HHHHHTTCSCC-------CCCCEEEEEEEEECCC-------
T ss_pred cCCCEEEEeCCCCEEEEEECCCCceeeee------ecc-CccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEE--
Confidence 455566666 7899999998766654321 010 011111 11111 23 46778889999999999998863
Q ss_pred cccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCcc
Q 012535 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 399 (461)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (461)
..+..+. ...++|++..+++++ ++.|+.||.++ ++.+-.+..+...
T Consensus 116 --w~~~~~~----------------~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~-------------- 162 (369)
T 2hz6_A 116 --QTLSSAF----------------ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA-------------- 162 (369)
T ss_dssp -----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC--------------
T ss_pred --EEecCCC----------------cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc--------------
Confidence 2332221 123456777777765 59999999986 7766555433211
Q ss_pred ceeeEEEecCC---CEEEEecCCCeEEEEecCCCCcc
Q 012535 400 DKFECCLSGDG---GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 400 ~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..++..+. ..+++++.||.|+.||..+|+..
T Consensus 163 ---~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 163 ---ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp ---CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred ---CccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 22233332 45677888999999999988653
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.86 E-value=2.6e-06 Score=77.68 Aligned_cols=228 Identities=11% Similarity=0.075 Sum_probs=124.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..+++++.++.|..+|.++++.......... +. +.....++ . ++.++.++
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---------~~-------~~p~~~~~-~------------v~v~~~~g 153 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE---------AL-------SRPVVSDG-L------------VLIHTSNG 153 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSC---------CC-------SCCEEETT-E------------EEEECTTS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc---------eE-------cCCEEECC-E------------EEEEcCCC
Confidence 45888899999999999999987655443211 00 00111122 2 36777888
Q ss_pred cEEeeeeecccCccccceeeEeeecccccce------eeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCC
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHI------NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 278 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v------~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (461)
.|..+| ..+.+ ....+ ... ..+ ...... +..++.+ .++.+..+|..+++.........+...
T Consensus 154 ~l~~~d-~~tG~------~~W~~-~~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 154 QLQALN-EADGA------VKWTV-NLD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp EEEEEE-TTTCC------EEEEE-ECC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred eEEEEE-CCCCc------EEEEE-eCC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 888888 32211 11111 000 111 111121 3456666 789999999987765544311100000
Q ss_pred ---CCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCE
Q 012535 279 ---EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (461)
Q Consensus 279 ---~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~ 355 (461)
............. + ..++.++.++.+..+|.++++..+. ... .....+.. ++..
T Consensus 223 ~~~~~~~~~~~~p~~~--~-~~v~~~~~~g~l~~~d~~tG~~~w~----~~~--------------~~~~~~~~--~~~~ 279 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVV--N-GVVFALAYNGNLTALDLRSGQIMWK----REL--------------GSVNDFIV--DGNR 279 (376)
T ss_dssp -------CCCCCCEEE--T-TEEEEECTTSCEEEEETTTCCEEEE----ECC--------------CCEEEEEE--ETTE
T ss_pred cccccccccCCCcEEE--C-CEEEEEecCcEEEEEECCCCcEEee----ccC--------------CCCCCceE--ECCE
Confidence 0000000111111 3 4677788899999999998876322 111 12333333 2445
Q ss_pred EEEe-cCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 356 ILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 356 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
|+.+ .++.|..+|..+ ++.+-.......... ..... .+..|+.++.+|.|+++|..+++..
T Consensus 280 l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~--------------~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLL--------------TSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EEEEETTCCEEEEETTT-CCEEEEECTTTTSCC--------------CCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEcCCCeEEEEECCC-CcEEEeecccCCCcc--------------cCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 5554 468999999986 665544431111100 02222 2567888889999999999998754
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=1.8e-06 Score=78.78 Aligned_cols=264 Identities=9% Similarity=0.069 Sum_probs=142.3
Q ss_pred CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCC
Q 012535 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (461)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~ 125 (461)
++..+++++.++.|..+|..+++.. -.+.... .........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~-----------------------W~~~~~~------------~~~~~p~~~---- 142 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVA-----------------------WQTKVAG------------EALSRPVVS---- 142 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEE-----------------------EEEECSS------------CCCSCCEEE----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE-----------------------EEEeCCC------------ceEcCCEEE----
Confidence 3457778888999999998877632 0111111 001111222
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..+++++.++.|..+|..+++.................. ..... ++. ++.+..++
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----------~~~~~-~~~-------------v~~g~~~g 198 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----------APTTA-FGA-------------AVVGGDNG 198 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----------CCEEE-TTE-------------EEECCTTT
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----------CcEEE-CCE-------------EEEEcCCC
Confidence 3478889999999999999988766554321110000000 11111 222 36777788
Q ss_pred cEEeeeeecccCccccceeeEeeecccc------cceeeEEeCC--CCCEEEEe-CCCeEEEEEccCCCCceeeeccCCC
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHD------YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (461)
.+..+| ....+ .......... ..+..+...| .+..+..+ .++.+..+|.++++.....
T Consensus 199 ~l~~~d-~~tG~------~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~------ 265 (376)
T 3q7m_A 199 RVSAVL-MEQGQ------MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR------ 265 (376)
T ss_dssp EEEEEE-TTTCC------EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE------
T ss_pred EEEEEE-CCCCc------EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec------
Confidence 888888 32211 1111100000 0000011111 13455555 7899999999877655432
Q ss_pred CCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEE
Q 012535 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (461)
Q Consensus 277 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l 356 (461)
. ......+... + ..++.++.++.|..+|..+++..+. ...... ..+..... .+..|
T Consensus 266 ~----~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w~----~~~~~~-----------~~~~~~~~--~~~~l 321 (376)
T 3q7m_A 266 E----LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLWT----QSDLLH-----------RLLTSPVL--YNGNL 321 (376)
T ss_dssp C----CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEEE----ECTTTT-----------SCCCCCEE--ETTEE
T ss_pred c----CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEEe----ecccCC-----------CcccCCEE--ECCEE
Confidence 1 1223344443 4 5788888899999999999876432 110000 11222222 23456
Q ss_pred EEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEe
Q 012535 357 LSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (461)
Q Consensus 357 ~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 426 (461)
+.++ +|.|.++|..+ ++.+..+......+. ..... .+..|+.++.+|.|+.|+
T Consensus 322 ~v~~~~g~l~~~d~~t-G~~~~~~~~~~~~~~--------------~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 322 VVGDSEGYLHWINVED-GRFVAQQKVDSSGFQ--------------TEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECTTSEEEEEETTT-CCEEEEEECCTTCBC--------------SCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCeEEEEECCC-CcEEEEEecCCCcce--------------eCCEE--ECCEEEEEeCCCEEEEEe
Confidence 6655 69999999986 777766654332221 01222 255778888999999987
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.80 E-value=9.2e-06 Score=70.07 Aligned_cols=196 Identities=8% Similarity=-0.017 Sum_probs=116.3
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (461)
.+++++++..+ +++....+.|..++ .. .... .............+++++++..|..+ ..
T Consensus 40 gi~~d~~~~~l-----------y~~d~~~~~I~~~~-~~---g~~~----~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~ 100 (267)
T 1npe_A 40 GLAFDCVDKVV-----------YWTDISEPSIGRAS-LH---GGEP----TTIIRQDLGSPEGIALDHLGRTIFWTDSQL 100 (267)
T ss_dssp EEEEETTTTEE-----------EEEETTTTEEEEEE-SS---SCCC----EEEECTTCCCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEecCCCEE-----------EEEECCCCEEEEEe-cC---CCCc----EEEEECCCCCccEEEEEecCCeEEEEECCC
Confidence 77888876654 35555678888888 32 2111 11112222467899999976655554 58
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec---CCeEEEEECCCcccccccccccccccC
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEA 330 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (461)
+.|.+++++... ...+. .........++++|++ ..|+.+.. .+.|..+++..... ..+....
T Consensus 101 ~~I~~~~~~g~~-~~~~~-------~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~-----~~~~~~~- 165 (267)
T 1npe_A 101 DRIEVAKMDGTQ-RRVLF-------DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNR-----RILAQDN- 165 (267)
T ss_dssp TEEEEEETTSCS-CEEEE-------CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCC-----EEEECTT-
T ss_pred CEEEEEEcCCCC-EEEEE-------ECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCc-----EEEEECC-
Confidence 899999987432 22211 1112456899999975 44444443 46888888764321 1111000
Q ss_pred CCccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 331 PGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 331 ~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
......+++++++..|+.++ .+.|.++|+.. ......+.....+ ..++..
T Consensus 166 ----------~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P----------------~gi~~d- 217 (267)
T 1npe_A 166 ----------LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP----------------FAVTSY- 217 (267)
T ss_dssp ----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE----------------EEEEEE-
T ss_pred ----------CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc----------------eEEEEe-
Confidence 13478899999888777654 38999999863 2222222211111 256654
Q ss_pred CCCEEEEecCCCeEEEEecCCCCcc
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
++.++++....+.|..+|..+++..
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCCce
Confidence 3445555556789999999988655
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.80 E-value=1.1e-06 Score=78.43 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=112.0
Q ss_pred cccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
....|.+++|+++|+++++. .+ .|.+||..+++.. .+........ ..
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~---------------------~~~~~~~~~~----------~~ 134 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT---------------------LHAELESDLP----------GN 134 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE---------------------EEECSSTTCT----------TE
T ss_pred CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE---------------------EEeeCCCCCC----------CC
Confidence 34679999999999877654 44 4999998765421 1111110000 03
Q ss_pred ceEEEEEeecCCCcEEEEEeCC----CeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccc
Q 012535 114 KINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 189 (461)
.++.++++ ++|+++++...+ +...||.+.+++......... .+..++|+|+|+.+
T Consensus 135 ~~~~i~~d--~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~----------------~~~~i~~s~dg~~l--- 193 (326)
T 2ghs_A 135 RSNDGRMH--PSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS----------------IPNSICFSPDGTTG--- 193 (326)
T ss_dssp EEEEEEEC--TTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES----------------SEEEEEECTTSCEE---
T ss_pred CCCCEEEC--CCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCc----------------ccCCeEEcCCCCEE---
Confidence 58899998 556666554321 234444444454433221110 11167899999864
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCc-ccc-ceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCC
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQET-NLV-AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
+++...++.|.+|+ +..... ... ......+ ......+..++++++|++.++. .++.|..||.. ++.
T Consensus 194 --------yv~~~~~~~I~~~d-~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~ 262 (326)
T 2ghs_A 194 --------YFVDTKVNRLMRVP-LDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH 262 (326)
T ss_dssp --------EEEETTTCEEEEEE-BCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE
T ss_pred --------EEEECCCCEEEEEE-cccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCE
Confidence 24455678899988 431011 111 1111111 2234556789999999888877 67899999984 332
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEe-CCCCCeEEEEec
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS 303 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~ 303 (461)
. .. +..+...+++++|+ |++ ..|++++.
T Consensus 263 ~-~~-------i~~~~~~~~~~af~g~d~-~~L~vt~~ 291 (326)
T 2ghs_A 263 I-AR-------YEVPGKQTTCPAFIGPDA-SRLLVTSA 291 (326)
T ss_dssp E-EE-------EECSCSBEEEEEEESTTS-CEEEEEEB
T ss_pred E-EE-------EECCCCCcEEEEEecCCC-CEEEEEec
Confidence 2 22 22234568999998 887 55554443
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.79 E-value=6.5e-06 Score=71.03 Aligned_cols=221 Identities=10% Similarity=0.083 Sum_probs=127.0
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.+..++|.+. ++..+++-..++.|..+++.++......... . ..|..+++++++..+
T Consensus 37 ~~~gi~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--------~-------~~p~~ia~d~~~~~l------- 93 (267)
T 1npe_A 37 VIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPTTIIRQD--------L-------GSPEGIALDHLGRTI------- 93 (267)
T ss_dssp EEEEEEEETT-TTEEEEEETTTTEEEEEESSSCCCEEEECTT--------C-------CCEEEEEEETTTTEE-------
T ss_pred cEEEEEEecC-CCEEEEEECCCCEEEEEecCCCCcEEEEECC--------C-------CCccEEEEEecCCeE-------
Confidence 3788999842 2344444557789999998876543322110 0 112277888876554
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--C--CCeEEEEEccCCCCcee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFN 269 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~ 269 (461)
+++....+.|.+++ +. .... ..+..........++++|++..|..+ . .+.|..++++... ...
T Consensus 94 ----yv~d~~~~~I~~~~-~~---g~~~----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~ 160 (267)
T 1npe_A 94 ----FWTDSQLDRIEVAK-MD---GTQR----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRI 160 (267)
T ss_dssp ----EEEETTTTEEEEEE-TT---SCSC----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEE
T ss_pred ----EEEECCCCEEEEEE-cC---CCCE----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEE
Confidence 34555667888877 32 2111 11112222457899999975555444 3 4788888876322 211
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+. .........++++|++..++++-...+.|..+|+..... ...+... .....++.
T Consensus 161 ~~-------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~~~-------------~~P~gi~~ 216 (267)
T 1npe_A 161 LA-------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----RKVLEGL-------------QYPFAVTS 216 (267)
T ss_dssp EE-------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----EEEEECC-------------CSEEEEEE
T ss_pred EE-------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce----EEEecCC-------------CCceEEEE
Confidence 11 112345789999998734555556678999999876432 1111111 22345665
Q ss_pred ccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCC
Q 012535 350 ARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (461)
Q Consensus 350 s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (461)
. +..|+.++ .+.|.++|..+ ++.+..+....... .+.+++.|++.
T Consensus 217 d--~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~g~~~~--------------p~gi~~~~~~~ 263 (267)
T 1npe_A 217 Y--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHPHKQTR--------------LYGITIALSQC 263 (267)
T ss_dssp E--TTEEEEEETTTTEEEEEETTT-TEEEEEECCSSCCC--------------CCCEEEECSCC
T ss_pred e--CCEEEEEECCCCeEEEEeCCC-CCceEEEccccccc--------------cceeeecCccC
Confidence 4 45555544 38999999985 67777765432110 03788888764
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.74 E-value=2.7e-06 Score=83.75 Aligned_cols=79 Identities=8% Similarity=0.003 Sum_probs=52.8
Q ss_pred CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec
Q 012535 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
+|.|+.||+.+++..++ +..+ .++....+...+.+++.|+ |+.++.||.++ ++.+-.++..
T Consensus 454 ~g~l~A~D~~tG~~~W~----~~~~-------------~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~~ 515 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWE----VPYV-------------TIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPAA 515 (689)
T ss_dssp EEEEEEEETTTTEEEEE----EEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred ceeEEEEECCCCCeEeE----ccCC-------------CCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeCC
Confidence 37789999998876432 2222 1223335556677888876 69999999997 8988888765
Q ss_pred cCccccccccccCCCccceeeEEEecCCCEEE
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (461)
..... .-+.|..+|+..+
T Consensus 516 ~~~~~--------------~p~ty~~~G~qyv 533 (689)
T 1yiq_A 516 SGVMA--------------APVTYSVDGEQYV 533 (689)
T ss_dssp SCCCS--------------CCEEEEETTEEEE
T ss_pred CCccc--------------CceEEEECCEEEE
Confidence 44321 2577788887443
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.70 E-value=1.2e-05 Score=72.83 Aligned_cols=217 Identities=9% Similarity=-0.019 Sum_probs=122.6
Q ss_pred ceee--cCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEee----e-cc-cccceeeEEeCCCCCEE
Q 012535 177 KSYM--ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY----A-HA-HDYHINSISNNSDGETF 248 (461)
Q Consensus 177 ~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~----~-~~-~~~~v~~i~~~~~~~~l 248 (461)
..++ ++++.+ ++.+..++.|.++| +...... .+..++. + .. -......+...|+| ++
T Consensus 87 ~~~~~~~~r~~l-----------~v~~l~s~~I~viD-~~t~p~~--p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~ 151 (462)
T 2ece_A 87 PNGKPNIERRFL-----------IVPGLRSSRIYIID-TKPNPRE--PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IY 151 (462)
T ss_dssp TTCCTTCCSCEE-----------EEEBTTTCCEEEEE-CCSCTTS--CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EE
T ss_pred cccCCCccCCEE-----------EEccCCCCeEEEEE-CCCCCCC--ceeeeeechhhcccccCCCcccceeECCCe-EE
Confidence 3445 666665 57788899999999 4322111 1111221 0 01 11245667888999 77
Q ss_pred EEe-CC------CeEEEEEccCCCCceeeeccCCCCCCCCC-cceEEEEEeCCCCCeEEEEe------------------
Q 012535 249 ISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSS------------------ 302 (461)
Q Consensus 249 ~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~------------------ 302 (461)
+++ .+ +.|.++|.++.+...+. ...... ..-..+-|+|++ +.+++..
T Consensus 152 Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~------~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~ 224 (462)
T 2ece_A 152 ISALGNEEGEGPGGILMLDHYSFEPLGKW------EIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKD 224 (462)
T ss_dssp EEEEEETTSCSCCEEEEECTTTCCEEEEC------CSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred EEcCCCcCCCCCCeEEEEECCCCeEEEEE------ccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhh
Confidence 776 44 78999999866544322 111112 223468889998 8888774
Q ss_pred -cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE--ccCCCEEEEe-c-----C-CeEEEEEccCC
Q 012535 303 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF--ARNGRHILSR-D-----Y-MTLKLWDINMD 372 (461)
Q Consensus 303 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~~g~~l~s~-~-----d-~~i~vwd~~~~ 372 (461)
.+.+|.+||+.+++. +.++..... ......+.| +|++++++.+ . . ++|.+|..+.
T Consensus 225 ~~~d~V~v~D~~~~k~----~~tI~vg~~----------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~- 289 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKR----IHSLTLGEE----------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED- 289 (462)
T ss_dssp HSCCEEEEEETTTTEE----EEEEESCTT----------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-
T ss_pred ccCCEEEEEECCCCcE----eeEEecCCC----------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-
Confidence 378999999998754 333333100 023445555 9999988763 2 3 7888887763
Q ss_pred CCC--eeEEeeccCcc-ccccccccC-CC-ccceeeEEEecCCCEEEEec-CCCeEEEEecCCC
Q 012535 373 SGP--VATFQVHEHLR-PKLCDLYEN-DS-IFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG 430 (461)
Q Consensus 373 ~~~--~~~~~~~~~~~-~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~ 430 (461)
+.. .+.+......+ ..+..+... .. -.....+.+|+||++|.++. ..+.|.+||+...
T Consensus 290 g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 290 GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 321 11111111000 000000000 00 00124899999999887665 4689999999643
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.68 E-value=4.1e-07 Score=81.29 Aligned_cols=177 Identities=9% Similarity=0.104 Sum_probs=106.6
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCC
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 277 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (461)
+..++.++.+..+| . +. ...... ......+.++...+++.+++...++.|..+|.. ++.....
T Consensus 110 l~v~t~~~~l~~~d-~---~g----~~~~~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~------- 172 (330)
T 3hxj_A 110 LYVTSMDGHLYAIN-T---DG----TEKWRF-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF------- 172 (330)
T ss_dssp EEEECTTSEEEEEC-T---TS----CEEEEE-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE-------
T ss_pred EEEEecCCEEEEEc-C---CC----CEEEEE-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE-------
Confidence 36777788888887 2 21 111111 223344666777778876665578999999987 4433321
Q ss_pred CCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEE
Q 012535 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (461)
Q Consensus 278 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~ 357 (461)
......+.++...+++ . +..++ +.|..+| .++... ..+.... ..+.++...++|.+.+
T Consensus 173 -~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~~~----~~~~~~~------------~~~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 173 -KTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGTEK----WNFYAGY------------WTVTRPAISEDGTIYV 230 (330)
T ss_dssp -ECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSCEE----EEECCSS------------CCCSCCEECTTSCEEE
T ss_pred -ecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCcEE----EEEccCC------------cceeceEECCCCeEEE
Confidence 1123456677777777 5 44444 8899999 555432 2222211 4577888888887777
Q ss_pred EecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCc
Q 012535 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (461)
Q Consensus 358 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 432 (461)
+..++.|..+|.. ++.+..+....... ..+...+++ .|..++.+|.|..+|. +++.
T Consensus 231 ~t~~~gl~~~~~~--g~~~~~~~~~~~~~---------------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 231 TSLDGHLYAINPD--GTEKWRFKTGKRIE---------------SSPVIGNTD-TIYFGSYDGHLYAINP-DGTE 286 (330)
T ss_dssp EETTTEEEEECTT--SCEEEEEECSSCCC---------------SCCEECTTS-CEEEECTTCEEEEECT-TSCE
T ss_pred EcCCCeEEEECCC--CCEeEEeeCCCCcc---------------ccceEcCCC-eEEEecCCCCEEEECC-CCcE
Confidence 6667888888743 55555554332221 134455555 4666777888999996 4543
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.68 E-value=7.4e-06 Score=69.47 Aligned_cols=210 Identities=8% Similarity=-0.016 Sum_probs=127.0
Q ss_pred ccccc--ceEEEEEcCCCCEEEEeec--CCcEEEEEcCCCCCCCCcccccccccccccCCcccccccc--ccCCCcchhh
Q 012535 32 VQEVD--IISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE--FQSHEPEFDY 105 (461)
Q Consensus 32 ~~h~~--~V~~~~~s~~g~~l~tg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~ 105 (461)
..|.. ....++|++++.++++.+. ++.|+++|+.+++.. .. +..+
T Consensus 15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-----------------------~~i~l~~~------ 65 (266)
T 2iwa_A 15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-----------------------NIHKMDDS------ 65 (266)
T ss_dssp EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-----------------------EEEECCTT------
T ss_pred EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-----------------------EEEecCCC------
Confidence 34543 3579999998754444432 579999999988632 11 1122
Q ss_pred ccccccccceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCc
Q 012535 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (461)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (461)
.....+++. . +..+++.-.++.+.++|..+.+....+... .+. ...+.++|+.
T Consensus 66 -------~fgeGi~~~--g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------------g~glt~Dg~~ 118 (266)
T 2iwa_A 66 -------YFGEGLTLL--N-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------------GWGLATDGKI 118 (266)
T ss_dssp -------CCEEEEEEE--T-TEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------------CCEEEECSSS
T ss_pred -------cceEEEEEe--C-CEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------------eEEEEECCCE
Confidence 113456665 2 344444557899999999988877665543 110 3456778877
Q ss_pred ccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecc-cccceeeEEeCCCCCEEEEe-CCCeEEEEEccC
Q 012535 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (461)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (461)
+ +.+..++.|.++| . +.............+ .-..++.+.|. ++..++.. .++.|.+.|..+
T Consensus 119 l------------~vs~gs~~l~viD-~---~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 119 L------------YGSDGTSILYEID-P---HTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp E------------EEECSSSEEEEEC-T---TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred E------------EEECCCCeEEEEE-C---CCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence 5 5556788999888 2 222211111111011 11235677777 67666555 689999999997
Q ss_pred CCCceeeeccCCC------CCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCc
Q 012535 264 SNQSFNIVDVKPA------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (461)
Q Consensus 264 ~~~~~~~~~~~~~------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (461)
++.... +++... .-.......+.++|+|++.++++++...+.+...++...
T Consensus 182 g~V~~~-I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 GTLLGW-ILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCEEEE-EECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CcEEEE-EECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 654333 222100 000112456899999998667778878899988887653
No 239
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.67 E-value=1.3e-06 Score=77.10 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=100.4
Q ss_pred cceeeEEeCCCCC-EEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 234 YHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 234 ~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
......+|+++++ ++++. .++.|..|+.. ++ . .. +......+..++++++| +++++...++.|.+||
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~-~~-------~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V-DV-------LLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSD 113 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E-EE-------EEESCSCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E-EE-------EeCCCCccceeeECCCC-CEEEEECCCCEEEEEC
Confidence 4567889999998 55566 68999999874 33 2 11 22245668899999998 7776666678899999
Q ss_pred CCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE----ec--------------CCeEEEEEccCCC
Q 012535 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD--------------YMTLKLWDINMDS 373 (461)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s----~~--------------d~~i~vwd~~~~~ 373 (461)
.. ++. ..+..... ......+..++++|+|++.++ |. .+.|..||..+ +
T Consensus 114 ~~-g~~-----~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g 179 (305)
T 3dr2_A 114 AD-GQA-----HLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-S 179 (305)
T ss_dssp TT-SCE-----EEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-C
T ss_pred CC-CCE-----EEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-C
Confidence 86 432 11111100 000135778999999998886 32 14566666643 4
Q ss_pred CCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCC------CeEEEEecCCC
Q 012535 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEG 430 (461)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~ 430 (461)
+... +.... .. ..++|+||++.|+.+... +.|++|++..+
T Consensus 180 ~~~~-~~~~~-~p---------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 180 PLQR-MADLD-HP---------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp CCEE-EEEES-SE---------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred cEEE-EecCC-CC---------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 4332 22211 11 379999999987776654 78999998754
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.66 E-value=3.9e-08 Score=89.36 Aligned_cols=187 Identities=7% Similarity=0.027 Sum_probs=95.1
Q ss_pred CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEEEEEeecCC
Q 012535 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (461)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~ 125 (461)
++..|++++.||.|+.||..+++.. -.+.... +.+..+. .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~-----------------------W~~~~~~--------------~~s~p~~--~~ 48 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK-----------------------WTLKEDP--------------VLQVPTH--VE 48 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE-----------------------EEEECCC--------------SCCCC------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE-----------------------EEecCCC--------------ceecceE--cC
Confidence 5779999999999999999887632 1111111 2222233 34
Q ss_pred CcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCC
Q 012535 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (461)
Q Consensus 126 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (461)
+..+++++.|+.|..||.++++.......+... .+. . +.....++ . +++++.++
T Consensus 49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-------~~~---~---sp~~~~~~-~------------v~~g~~dg 102 (369)
T 2hz6_A 49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-------LVQ---A---SPCRSSDG-I------------LYMGKKQD 102 (369)
T ss_dssp -CCEEECTTTCCEEEC-----CCSEECSCCHHH-------HHT---T---CSCC------------------CCCCEEEE
T ss_pred CCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-------ccc---c---CceEecCC-E------------EEEEeCCC
Confidence 557777789999999999888754433322100 000 0 01111122 2 47888899
Q ss_pred cEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcc
Q 012535 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (461)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (461)
.+..|| ..+.+. ...+ ..+. ...++|++..++++ .++.|..||.++++...... .. .
T Consensus 103 ~v~a~D-~~tG~~------~w~~-~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~------~~----~ 160 (369)
T 2hz6_A 103 IWYVID-LLTGEK------QQTL-SSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT------YF----D 160 (369)
T ss_dssp EEEEEC-CC---------------------------------EEEEEEEEEEECCCSSSSSCCCEEE------EE----E
T ss_pred EEEEEE-CCCCcE------EEEe-cCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe------cc----c
Confidence 999999 332221 1111 1111 23456677788877 79999999998777554321 00 1
Q ss_pred eEEEEEeCCC--CCeEEEEecCCeEEEEECCCccccc
Q 012535 285 ITSAEFHPTH--CNMLAYSSSKGSIRLIDMRQSALCD 319 (461)
Q Consensus 285 v~~v~~~p~~--~~~l~~~~~dg~i~iwd~~~~~~~~ 319 (461)
....++.++. ...+++++.||.|+.||.++++..+
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred ccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 1222333321 0356778899999999999987643
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.65 E-value=2.5e-05 Score=76.71 Aligned_cols=172 Identities=14% Similarity=0.160 Sum_probs=100.3
Q ss_pred eEEeCCCCCEEEEe-CCC-------------------eEEEEEccCCCCceeeeccCCCCCCCCC-------cceEEEEE
Q 012535 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF 290 (461)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~v~~v~~ 290 (461)
.++++++...++.+ .++ .|..+|.++++...... ...|. ..+....+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~------~~~~~~wd~~~~~~~~~~d~ 307 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ------VTPGDSWDFTATQQITLAEL 307 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee------cCCCccccccCCCCcEEEEe
Confidence 46788887787777 555 48899998877665432 11111 22222233
Q ss_pred eCCCCC---eEEEEecCCeEEEEECCCccccccccc-------ccccccC-C----C------cccccccccc--ceeEE
Q 012535 291 HPTHCN---MLAYSSSKGSIRLIDMRQSALCDTHSK-------LFEEQEA-P----G------TRSFFTEIIA--SISDI 347 (461)
Q Consensus 291 ~p~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~-~----~------~~~~~~~h~~--~v~~l 347 (461)
..++ + .++.++.+|.++++|..+++.+..... .+..... + . ....+.+..+ .-..+
T Consensus 308 ~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 308 NIDG-KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EETT-EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred ccCC-cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 3355 3 688999999999999999986421000 0000000 0 0 0000000000 01236
Q ss_pred EEccCCCEEEEe------------------------------------cC-CeEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 348 KFARNGRHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 348 ~~s~~g~~l~s~------------------------------------~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
+++|+...++.. .. |.|..||+.+ ++.+-....+...
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~----- 460 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW----- 460 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC-----
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC-----
Confidence 777766555431 12 7789999986 6666555543321
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
....+...+.+++.++.||.|+.||.++++..
T Consensus 461 -----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 461 -----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp -----------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred -----------cCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 13455667888999999999999999999765
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.60 E-value=1.1e-05 Score=68.52 Aligned_cols=209 Identities=10% Similarity=0.001 Sum_probs=122.1
Q ss_pred eEEEEEeecCCCcEEEEEeC--CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 115 INKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
...+.|+ +++.++++.+. ++.|++.|+.+++..........+ . ...+..++..+
T Consensus 23 ~~Gl~~~--~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~---------f-------geGi~~~g~~l------ 78 (266)
T 2iwa_A 23 TQGLVYA--ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY---------F-------GEGLTLLNEKL------ 78 (266)
T ss_dssp EEEEEEC--STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC---------C-------EEEEEEETTEE------
T ss_pred cccEEEe--CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc---------c-------eEEEEEeCCEE------
Confidence 5799998 44544444443 689999999999987765543211 0 12233344443
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
.++.-.++.+.++| . .. .+....+..+ .. ....++++++.++.+ .++.|.++|..+.+....+.
T Consensus 79 -----yv~t~~~~~v~viD-~---~t---~~v~~~i~~g-~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 79 -----YQVVWLKNIGFIYD-R---RT---LSNIKNFTHQ-MK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp -----EEEETTCSEEEEEE-T---TT---TEEEEEEECC-SS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred -----EEEEecCCEEEEEE-C---CC---CcEEEEEECC-CC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 35666788999998 3 22 2222232122 11 224456688877777 68899999998665443331
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcc-ccccccccceeEEEEc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR-SFFTEIIASISDIKFA 350 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s 350 (461)
+. .-...-..++.+.|. ++ .+.+....++.|.+.|..+++.. ..+......... ..-..-....+.++|+
T Consensus 144 -Vg--~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 144 -VK--YNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL----GWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp -CE--ETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE----EEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred -EC--CCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE----EEEECCCcccccccccccccCceEEEEEc
Confidence 10 000011236788888 66 66666667899999999998763 333211000000 0000001346899999
Q ss_pred cCCCEEEEe-cC-CeEEEEEccC
Q 012535 351 RNGRHILSR-DY-MTLKLWDINM 371 (461)
Q Consensus 351 ~~g~~l~s~-~d-~~i~vwd~~~ 371 (461)
|+++.|+.+ .. +.+.+.++..
T Consensus 215 ~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 215 QENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCeEEEEEEec
Confidence 998776664 33 8999988874
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.59 E-value=1.2e-05 Score=71.54 Aligned_cols=258 Identities=9% Similarity=-0.036 Sum_probs=138.5
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCC----CccccccccCcceeec-CCCccccc
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG----PIFGSHVSAIPKSYMA-NGGCGERN 189 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~-~g~~~~~~ 189 (461)
..+++|. +++.++.++..++.|..|+..+++.................+ ........|..+++.+ ++..
T Consensus 21 p~~i~~d--~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l---- 94 (322)
T 2fp8_A 21 PNSFTFD--STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL---- 94 (322)
T ss_dssp CCCEECC--TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE----
T ss_pred ceEEEEc--CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE----
Confidence 5677887 457778888889999999987765443321100000000000 0000001123677776 5554
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-C---------------
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D--------------- 252 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~--------------- 252 (461)
+++...+.+..+| . ...................++.+++.+ +|++.++- .
T Consensus 95 ---------~v~d~~~~i~~~d-~---~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 95 ---------YIVDCYYHLSVVG-S---EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp ---------EEEETTTEEEEEC-T---TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred ---------EEEECCCCEEEEe-C---CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 4444444466666 2 211111110000001123467899999 89877764 2
Q ss_pred --CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEE-ecCCeEEEEECCCccccccccccccccc
Q 012535 253 --DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (461)
Q Consensus 253 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (461)
++.|..+|..+.... .+ .........++++|++ +.|+.+ ..++.|..|++.....-. ...+...
T Consensus 162 ~~~g~v~~~d~~~~~~~-~~--------~~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~~--~~~~~~~- 228 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETT-LL--------LKELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKGT--AEVLVKI- 228 (322)
T ss_dssp CCCEEEEEEETTTTEEE-EE--------EEEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTTC--EEEEEEC-
T ss_pred CCCceEEEEeCCCCEEE-Ee--------ccCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCCc--cceEEeC-
Confidence 266888887543211 11 1112345679999998 655544 567899999987532100 1111110
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEe-c----------CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCc
Q 012535 330 APGTRSFFTEIIASISDIKFARNGRHILSR-D----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (461)
Q Consensus 330 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~-~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (461)
.+ ...++++++|++.++. . .+.|..+|.. ++.+..+....+.. .
T Consensus 229 -----------~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~-----------~ 283 (322)
T 2fp8_A 229 -----------PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFA-----------G 283 (322)
T ss_dssp -----------SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTT-----------T
T ss_pred -----------CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCc-----------c
Confidence 13 6778999999877764 2 2557777653 67666665443210 0
Q ss_pred cceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
..+..+++ .+++++++....+.|..+++...
T Consensus 284 ~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 284 EHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 01125655 46777777777889999998643
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=1.6e-05 Score=66.53 Aligned_cols=189 Identities=13% Similarity=0.192 Sum_probs=110.6
Q ss_pred ceEEEEEcCCCCEEEEeecCC--cEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 37 IISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
-...+.|+ ++.++.+.+.+| .|+++|+.+++.. ..+.-. ..
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-----------------------~~~~l~-------------~~ 86 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-----------------------QQIELG-------------KR 86 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-----------------------EEEECC-------------TT
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-----------------------EEEecC-------------Cc
Confidence 34789999 676666666666 8999999988642 111111 11
Q ss_pred e--EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 115 I--NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 115 v--~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
. ..++.. . +..+++.-.++.+.++|.++.+....+..... ...+.++++.+
T Consensus 87 ~FgeGit~~--g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------------------G~glt~dg~~L------ 139 (262)
T 3nol_A 87 YFGEGISDW--K-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------------------GWGLTHNDQYL------ 139 (262)
T ss_dssp CCEEEEEEE--T-TEEEEEESSSSEEEEEETTTCCEEEEEECSSC------------------CCCEEECSSCE------
T ss_pred cceeEEEEe--C-CEEEEEEeeCCEEEEEECccCcEEEEEECCCC------------------ceEEecCCCEE------
Confidence 2 335554 2 33444445789999999999888777665321 34555677764
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccc-cceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
+.+..++.|.++| .++............+.. ..++.+.|. +|+.++.. .++.|.+.|.++++.. ..
T Consensus 140 ------~~SdGs~~i~~iD----p~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~~ 207 (262)
T 3nol_A 140 ------IMSDGTPVLRFLD----PESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-GI 207 (262)
T ss_dssp ------EECCSSSEEEEEC----TTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-EE
T ss_pred ------EEECCCCeEEEEc----CCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-EE
Confidence 5555678899888 222221111111111111 334556666 67666666 6889999999866543 33
Q ss_pred eccCC---CC--CCCCCcceEEEEEeCCCCCeEEEE
Q 012535 271 VDVKP---AN--MEDLTEVITSAEFHPTHCNMLAYS 301 (461)
Q Consensus 271 ~~~~~---~~--~~~~~~~v~~v~~~p~~~~~l~~~ 301 (461)
+++.. .. .....+-.+.|+|+|++.+++++|
T Consensus 208 Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 208 IDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 33321 00 111234568999999983444443
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.58 E-value=7.9e-06 Score=76.74 Aligned_cols=197 Identities=8% Similarity=0.080 Sum_probs=109.5
Q ss_pred ccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEe-C-CCCCEEEEeC-------------------CCeEE
Q 012535 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN-N-SDGETFISAD-------------------DLRIN 257 (461)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~-~~~~~l~~~~-------------------d~~i~ 257 (461)
+....++.|.+.| +... ++.+...-.....+..+++ + |++++++++. ++.+.
T Consensus 106 Vnd~~~~rVavId-l~t~------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 106 MNDKANTRVARVR-CDVM------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEETTTTEEEEEE-TTTT------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred EEcCCCCEEEEEE-CCCc------eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4444556788877 3222 2222111122245677786 4 8888877661 45788
Q ss_pred EEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC---------------eEEEEECCCcccc----
Q 012535 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---------------SIRLIDMRQSALC---- 318 (461)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---------------~i~iwd~~~~~~~---- 318 (461)
+.|..+.+...++. . ......++++|+| +++++.+.+. .|.+.|.......
T Consensus 179 vID~~t~~v~~qI~------V---gg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 179 AVDADKWEVAWQVL------V---SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EEETTTTEEEEEEE------E---SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred EEECCCCeEEEEEE------e---CCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 88888655444331 1 1234667899998 7777777553 2444443221100
Q ss_pred ----cccccccccccCCCcc-ccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCC------------CeeEE
Q 012535 319 ----DTHSKLFEEQEAPGTR-SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSG------------PVATF 379 (461)
Q Consensus 319 ----~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~------------~~~~~ 379 (461)
...+..+......... ...-.-.....++.++|||+++++++ +++|.++|+.+ .+ ....+
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECC
T ss_pred CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEc
Confidence 0001111111000000 00000113467899999999999875 48999999985 21 11222
Q ss_pred eeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
....++ +.++|+++|...++.--|+.|.+||++.
T Consensus 328 ~vG~gP----------------~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGLGP----------------LHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCSCE----------------EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCCc----------------ceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 212222 4899999995556677899999999986
No 246
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.56 E-value=0.00023 Score=59.99 Aligned_cols=176 Identities=12% Similarity=0.133 Sum_probs=93.8
Q ss_pred eeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCce--eeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
...|++.+++.++++. .++.+.++++....... ....+.. .....+.....++|+|.+ +.|.++.......+|.+
T Consensus 72 ~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 72 LETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEE
T ss_pred hHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeCCC-CEEEEEECcCCceEEEE
Confidence 4456777777766666 57788888776544311 1111110 011235557899999998 66666666555555555
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCC-CEEEEecC-CeEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g-~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
. +......+..+..... .-..+...+.+++++|.. ++++.++. +.+.++|.. ++++..+.-..+.-. +.
T Consensus 150 ~-g~~~~~~l~i~~~~~~-----~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~-l~ 220 (255)
T 3qqz_A 150 N-GLLSSNELHISKDKAL-----QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRG-LS 220 (255)
T ss_dssp E-STTCSSCCEEEECHHH-----HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGG-CS
T ss_pred c-ccccCCceeeecchhh-----ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCC-cc
Confidence 4 1100000111110000 000012457899999954 44444554 899999976 566665554322100 00
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecC
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 428 (461)
..+..--.++|.++|++.++ ++.+.++.|.-.
T Consensus 221 -----~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 221 -----HNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp -----SCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred -----cccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 00000128999999985555 777777777544
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=5.3e-05 Score=67.28 Aligned_cols=271 Identities=10% Similarity=-0.012 Sum_probs=133.8
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceE
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (461)
...+++|+++|+++.++..++.|..|+..++... .+.... .+.......+... .........+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~g~~~----~~~~~~~~~p~ 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-----DFAYAS-------PYWNKAFCENSTD----AEKRPLCGRTY 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-----EEEESC-------TTCCHHHHTTCCC----GGGHHHHCCEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-----EEeccc-------ccccccccccccc----hhccccCCCCc
Confidence 3567889999988888888999999987654311 000000 0000000000000 00000013478
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeec-CCCcccccccCCCC
Q 012535 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFGCASN 195 (461)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 195 (461)
.+++.+. ++ .|+++...+.|..++..++.......... +. ....+..+++.+ +|... + .....
T Consensus 84 gi~~~~~-~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~--------~~---~~~~p~~i~~d~~~G~l~-v--~d~~~ 147 (322)
T 2fp8_A 84 DISYNLQ-NN-QLYIVDCYYHLSVVGSEGGHATQLATSVD--------GV---PFKWLYAVTVDQRTGIVY-F--TDVST 147 (322)
T ss_dssp EEEEETT-TT-EEEEEETTTEEEEECTTCEECEEEESEET--------TE---ECSCEEEEEECTTTCCEE-E--EESCS
T ss_pred eEEEcCC-CC-cEEEEECCCCEEEEeCCCCEEEEecccCC--------CC---cccccceEEEecCCCEEE-E--ECCcc
Confidence 8998731 34 56666555558888877654433321110 00 001122567777 77642 0 00000
Q ss_pred C--------ccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCC
Q 012535 196 D--------SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (461)
Q Consensus 196 ~--------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~ 265 (461)
. .++.+..++.|..+| .......... ......+.++++++++.|..+ ..+.|..|++....
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d----~~~~~~~~~~-----~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~ 218 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYD----PSTKETTLLL-----KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 218 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEE----TTTTEEEEEE-----EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT
T ss_pred cccccccceehcccCCCceEEEEe----CCCCEEEEec-----cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 0 000112235666666 2111111111 111345679999999876665 47899999987432
Q ss_pred C-ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec----------CCeEEEEECCCcccccccccccccccCCCcc
Q 012535 266 Q-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 266 ~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
. ....+. . ..+ ...++++++| ++.++... .+.|..+|.. ++. +..+......
T Consensus 219 ~~~~~~~~----~---~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~----~~~~~~~~g~--- 281 (322)
T 2fp8_A 219 KGTAEVLV----K---IPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI----LEVIPLPPPF--- 281 (322)
T ss_dssp TTCEEEEE----E---CSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCE----EEEEECCTTT---
T ss_pred CCccceEE----e---CCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCE----EEEEECCCCC---
Confidence 1 111110 1 122 6789999998 66665544 4678888865 332 2333222100
Q ss_pred ccccccccceeEEEEccCCCEEEEec-CCeEEEEEccC
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
....+..+++ .++++.++.. .+.|..+++..
T Consensus 282 -----~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 282 -----AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -----TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred -----ccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 0134666666 4565555543 48899998863
No 248
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.48 E-value=0.00016 Score=65.84 Aligned_cols=233 Identities=8% Similarity=0.010 Sum_probs=131.7
Q ss_pred EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcE
Q 012535 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (461)
Q Consensus 128 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 207 (461)
+|+.+ ....|+..++.......+.... ..+. .++|.+.+..+ +++-...+.|
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~---------~~~~-------gl~~d~~~~~l-----------y~~D~~~~~I 140 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLNNL---------ENAI-------ALDFHHRRELV-----------FWSDVTLDRI 140 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEECSC---------SCEE-------EEEEETTTTEE-----------EEEETTTTEE
T ss_pred eeEee-cCccceeeccCCCcEEEEecCC---------CccE-------EEEEecCCCeE-----------EEEeCCCCcE
Confidence 44444 3456888888766544433211 1112 67888766554 3444556777
Q ss_pred EeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcce
Q 012535 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (461)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (461)
..++ + +... ..............+++++.+..|..+ ..+.|.+.+++... ...+ +.......
T Consensus 141 ~r~~-~---~g~~----~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l-------~~~~l~~P 204 (386)
T 3v65_B 141 LRAN-L---NGSN----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVL-------LWQSLEKP 204 (386)
T ss_dssp EEEE-T---TSCC----EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEE-------ECSSCSCE
T ss_pred EEEe-c---CCCC----cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEe-------ecCCCCCC
Confidence 7776 2 2211 111112222356788999865555544 57888888887332 2221 12233557
Q ss_pred EEEEEeCCCCCeEEEEecC-CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CC
Q 012535 286 TSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM 362 (461)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~ 362 (461)
..++++|.+..++++-... +.|..+++..... ..+.... ......|+|+|++..|+.++ .+
T Consensus 205 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~-----------~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 205 RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSS-----------CSCEEEEEEEGGGTEEEEEETTTT
T ss_pred cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECC-----------CCCeeeEEEeCCCCEEEEEECCCC
Confidence 8999999763444444444 7888888865431 1111111 13468999999877777765 38
Q ss_pred eEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceee
Q 012535 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (461)
Q Consensus 363 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 437 (461)
.|..+|+. +.....+....... -..+++ ..+.++++-...+.|..++..+++......
T Consensus 269 ~I~~~d~d--G~~~~~~~~~~~~~--------------P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 269 VIERANLD--GSHRKAVISQGLPH--------------PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEECTT--SCSCEEEECSSCSS--------------EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEeCC--CCeeEEEEECCCCC--------------ceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 89999986 33333332111100 136777 355666676778899999876676554433
No 249
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00059 Score=60.24 Aligned_cols=235 Identities=7% Similarity=-0.030 Sum_probs=131.5
Q ss_pred EEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEE
Q 012535 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (461)
Q Consensus 129 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (461)
|+.+.. ..|+..++.+.+...+.... ..+. .++|++.+..+ +++-...+.|.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~---------~~p~-------g~~~d~~~~~l-----------y~~D~~~~~I~ 55 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNL---------RNVV-------ALDTEVASNRI-----------YWSDLSQRMIC 55 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSC---------SSEE-------EEEEETTTTEE-----------EEEETTTTEEE
T ss_pred EEEECC-CeEEEEECCCcceEehhcCC---------CceE-------EEEEEeCCCEE-----------EEEECCCCcEE
Confidence 444433 45888888877654443211 1112 67888766554 34555567888
Q ss_pred eeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceE
Q 012535 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (461)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (461)
.++ +...... ..........-..+..+++++.+..|..+ ..+.|.+.++.. .....+. ........
T Consensus 56 ~~~-~~g~~~~---~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~-------~~~~~~P~ 123 (316)
T 1ijq_A 56 STQ-LDRAHGV---SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF-------RENGSKPR 123 (316)
T ss_dssp EEE-C-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEE-------ECTTCCEE
T ss_pred EEE-CCCCCCC---cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEE-------ECCCCCcc
Confidence 777 3221000 01111112222456789998765555444 688999999873 3222221 11234578
Q ss_pred EEEEeCCCCCeEEEEecC-CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CCe
Q 012535 287 SAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMT 363 (461)
Q Consensus 287 ~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~ 363 (461)
.++++|.+..++++.... +.|...++..... ..+.... ......+++++++..|+.++ .+.
T Consensus 124 ~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-----~~~~~~~-----------~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred eEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-----EEEEECC-----------CCCceEEEEeccCCEEEEEECCCCe
Confidence 999999762444443333 6888888764321 1111110 14578999999888877765 389
Q ss_pred EEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccc
Q 012535 364 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (461)
Q Consensus 364 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 434 (461)
|..+|+. +.....+........ .-..+++. .+.++++-...+.|..++..+++...
T Consensus 188 I~~~d~d--g~~~~~~~~~~~~~~------------~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 188 ISSIDVN--GGNRKTILEDEKRLA------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp EEEEETT--SCSCEEEEECTTTTS------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEecC--CCceEEEeecCCccC------------CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence 9999986 333344422111000 01367775 45666666778899999987776543
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.46 E-value=0.00049 Score=69.33 Aligned_cols=310 Identities=10% Similarity=0.067 Sum_probs=169.6
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
...|.++...++|.+. .|+.++-+.+|+..+++.. . .. ........+. . ..
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~----~----~~------~~~~~~~~l~--~------------~~ 264 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIK----N----YL------HSPSNPKSIS--S------------NY 264 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEE----E----EC------CCTTCTTSCS--C------------SB
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEE----E----ee------cCCCCccccC--C------------Ce
Confidence 4568889888887644 4554444888987654311 0 00 0000000011 1 45
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
|.++... .+|. +..|+.+ -|.+|+..+++......... ....+....|. ++...++|..
T Consensus 265 i~~i~~d--~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~-------~i~~D~~g~l--------- 323 (795)
T 4a2l_A 265 IRSLAMD--SQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPV-ENGSLSQRSVR-------SIFMDSQGGM--------- 323 (795)
T ss_dssp EEEEEEC--TTSC-EEEEESS-CEEEEETTTTEEEEECCCTT-STTSCSSSCEE-------EEEECTTSCE---------
T ss_pred EEEEEEc--CCCC-EEEEeCC-hhheEcCCCCeEEEEecCCC-CCCCCCCCcEE-------EEEEeCCcCE---------
Confidence 8888876 4454 5555555 58899988776554322211 11112223333 4555566654
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEee---ecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeee
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY---AHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~ 271 (461)
-.|+.++.|..++ ...... ...... ..-....|.++...+++.+.+...++-|..|+..+... ...
T Consensus 324 ----Wigt~~~Gl~~~~-~~~~~~----~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~-~~~- 392 (795)
T 4a2l_A 324 ----WLGTYFGGLNYYH-PIRNRF----KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF-TSY- 392 (795)
T ss_dssp ----EEEESSSCEEEEC-GGGGSS----EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE-EEE-
T ss_pred ----EEEECCCCeEEeC-CCcccc----eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE-EEE-
Confidence 6677777788776 221110 000000 00123568899988888876655777788998774321 111
Q ss_pred ccCCCCC--CCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 272 DVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 272 ~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
...+... .-....|.++...+++ .+|..|+.++-|.+||..+++. ..+.... +. .....|.++..
T Consensus 393 ~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~-----~~~~~~~-~~------l~~~~v~~i~~ 459 (795)
T 4a2l_A 393 TLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQV-----ENFNQRN-SQ------LVNENVYAILP 459 (795)
T ss_dssp CCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCE-----EEECTTT-SC------CSCSCEEEEEE
T ss_pred ecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcE-----EEeecCC-CC------cCCCeeEEEEE
Confidence 0000000 0124578999999887 6477788878899999887653 2221100 00 01256899999
Q ss_pred ccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 350 s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
.++|++.++.. +.+.+||..+ + ....+..... ...+ . ...|.++...++|++.+... +-|..|+..+
T Consensus 460 d~~g~lwigt~-~Gl~~~~~~~-~-~~~~~~~~~~-~~~~----~---~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~ 526 (795)
T 4a2l_A 460 DGEGNLWLGTL-SALVRFNPEQ-R-SFTTIEKEKD-GTPV----V---SKQITTLFRDSHKRLWIGGE--EGLSVFKQEG 526 (795)
T ss_dssp CSSSCEEEEES-SCEEEEETTT-T-EEEECCBCTT-CCBC----C---CCCEEEEEECTTCCEEEEES--SCEEEEEEET
T ss_pred CCCCCEEEEec-CceeEEeCCC-C-eEEEcccccc-cccc----C---CceEEEEEECCCCCEEEEeC--CceEEEeCCC
Confidence 98888777655 5688899764 2 2222211100 0000 0 01245888888888766554 4588888876
Q ss_pred CC
Q 012535 430 GS 431 (461)
Q Consensus 430 ~~ 431 (461)
++
T Consensus 527 ~~ 528 (795)
T 4a2l_A 527 LD 528 (795)
T ss_dssp TE
T ss_pred Ce
Confidence 54
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.43 E-value=0.00056 Score=61.28 Aligned_cols=232 Identities=8% Similarity=0.009 Sum_probs=131.1
Q ss_pred EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcE
Q 012535 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (461)
Q Consensus 128 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 207 (461)
.|+.+. ...|+..++............ ..+. .++|++....+ +++-...+.|
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~~---------~~~~-------~l~~d~~~~~l-----------y~~D~~~~~I 97 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLNNL---------ENAI-------ALDFHHRRELV-----------FWSDVTLDRI 97 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEECSC---------SCEE-------EEEEETTTTEE-----------EEEETTTTEE
T ss_pred eeEeec-ccceEEEeCCCCeeEEeecCC---------CceE-------EEEEeccccEE-----------EEEeccCCce
Confidence 444443 345777777665544332211 1112 67888766654 2444456777
Q ss_pred EeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcce
Q 012535 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (461)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (461)
..++ +. ..... ............+++++.+..|..+ ..+.|.+.+++... ...+ +.......
T Consensus 98 ~r~~-~~---g~~~~----~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l-------~~~~l~~P 161 (349)
T 3v64_C 98 LRAN-LN---GSNVE----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVL-------LWQSLEKP 161 (349)
T ss_dssp EEEE-TT---SCSCE----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE-------ECTTCSCE
T ss_pred EEEe-cC---CCCce----EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEE-------EeCCCCCc
Confidence 7766 22 21111 1112222456789999865555444 57899999987433 2221 11223457
Q ss_pred EEEEEeCCCCCeEEEEecC-CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CC
Q 012535 286 TSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM 362 (461)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~ 362 (461)
..++++|.+..++.+-... +.|..+++..... ..+.... ......++++|++..|..++ .+
T Consensus 162 ~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~-----------~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 162 RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EESCCSS-----------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECC-----------CCCcceEEEeCCCCEEEEEECCCC
Confidence 8999999763455554445 7888888865431 1111111 14578999999887777765 38
Q ss_pred eEEEEEccCCCCCeeEEe-eccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccceee
Q 012535 363 TLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (461)
Q Consensus 363 ~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 437 (461)
.|..+|+. +.....+. ..-... ..+++. .+.++++-...+.|..++..+|+......
T Consensus 226 ~I~~~~~d--G~~~~~~~~~~~~~P---------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 226 VIERANLD--GSHRKAVISQGLPHP---------------FAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEEETT--SCSCEEEECSSCSSE---------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEeCC--CCceEEEEeCCCCCc---------------eEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 89999986 33333322 111111 367773 55666666677889888866676554333
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.40 E-value=0.00062 Score=68.62 Aligned_cols=300 Identities=12% Similarity=0.056 Sum_probs=164.0
Q ss_pred eEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccceEE
Q 012535 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (461)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (461)
|.++...++|++.+ |+.++-|..|+..+++.. ... ...+. ..|.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~---------------------~~~-~~~~~------------~~i~~ 219 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE---------------------KVI-PILGT------------KQIQA 219 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE---------------------ECC-----C------------CCEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE---------------------Eec-CCCCC------------CeeEE
Confidence 88888888885544 665545888887654311 000 00111 44888
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCc
Q 012535 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (461)
Q Consensus 118 v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (461)
+... .++ .+..++.++-|..|+..+++......... ....+....+. ++...++|..
T Consensus 220 i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~-------~i~~d~~g~l------------ 276 (795)
T 4a2l_A 220 ILQQ--SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPS-NPKSISSNYIR-------SLAMDSQNRL------------ 276 (795)
T ss_dssp EEEE--ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTT-CTTSCSCSBEE-------EEEECTTSCE------------
T ss_pred EEEc--CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCC-CccccCCCeEE-------EEEEcCCCCE------------
Confidence 8876 334 45566655558899988776544322110 01111122233 4555556654
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeee------cccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeee
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA------HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~ 271 (461)
..|+.+ .|.+|+ . ... ....... .-....|.++...++|.+-+...++-|..|+..+.... .+
T Consensus 277 -Wigt~~-Gl~~~~-~---~~~---~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~--~~ 345 (795)
T 4a2l_A 277 -WIGTFN-DLNIYH-E---GTD---SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK--NI 345 (795)
T ss_dssp -EEEESS-CEEEEE-T---TTT---EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE--EE
T ss_pred -EEEeCC-hhheEc-C---CCC---eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce--EE
Confidence 455555 577777 2 111 1111100 11235689999999988766657677888987643321 11
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccccccccccccccc-CCCccccccccccceeEEEEc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s 350 (461)
...+..-.-....|.++...+++ .|..|+.++-|..||..++.. ..+.... .+. ..+ ....|.++...
T Consensus 346 ~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~-----~~~~~~~~~~~--~~l--~~~~v~~i~~d 414 (795)
T 4a2l_A 346 RNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRF-----TSYTLQEDESA--RGI--GSNNIKAVYVD 414 (795)
T ss_dssp CCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCE-----EEECCC--------CC--SCSCEEEEEEE
T ss_pred cCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcE-----EEEecCCCCcc--cCC--CCccEEEEEEc
Confidence 11100001124568999999887 466678887899999877643 1111100 000 000 01568999998
Q ss_pred cCCC-EEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 351 RNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 351 ~~g~-~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
++|+ +.+...++.|..||..+ ++ ...+...... ... ..|.++...++|++.+... +-|.+|+..+
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~-------l~~---~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~ 480 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQ-------LVN---ENVYAILPDGEGNLWLGTL--SALVRFNPEQ 480 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSC-------CSC---SCEEEEEECSSSCEEEEES--SCEEEEETTT
T ss_pred CCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCC-------cCC---CeeEEEEECCCCCEEEEec--CceeEEeCCC
Confidence 8998 44444457899999874 33 3333211100 001 1245788888888666544 4588899876
Q ss_pred CC
Q 012535 430 GS 431 (461)
Q Consensus 430 ~~ 431 (461)
++
T Consensus 481 ~~ 482 (795)
T 4a2l_A 481 RS 482 (795)
T ss_dssp TE
T ss_pred Ce
Confidence 64
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.39 E-value=0.00029 Score=67.66 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=37.9
Q ss_pred CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 362 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+.|..||+.+ ++.+-.+...... ........+..++.++.||.|+.||.++++..
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 6788888885 6666555433211 12333445667778999999999999999765
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.39 E-value=3.4e-05 Score=64.66 Aligned_cols=196 Identities=9% Similarity=0.022 Sum_probs=113.2
Q ss_pred ceEEEEEeecCCCcEEEEEeCCC--eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 114 KINKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
-...+.|+ ++.++.+++.+| .|+.+|+++++.......... .. .....+++..+
T Consensus 44 ftqGL~~~---~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~---------~F-------geGit~~g~~l----- 99 (262)
T 3nol_A 44 FTEGFFYR---NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR---------YF-------GEGISDWKDKI----- 99 (262)
T ss_dssp EEEEEEEE---TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT---------CC-------EEEEEEETTEE-----
T ss_pred ccceEEEE---CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc---------cc-------eeEEEEeCCEE-----
Confidence 35788887 356666667765 999999999998776654321 11 12233445443
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceee
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (461)
.+..-.++.+.+|| ... .+....+..+. ....+++++..|+.+ .++.|.++|..+.+....+
T Consensus 100 ------y~ltw~~~~v~v~D-~~t------~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 100 ------VGLTWKNGLGFVWN-IRN------LRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp ------EEEESSSSEEEEEE-TTT------CCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred ------EEEEeeCCEEEEEE-Ccc------CcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 34555688999999 322 22222221111 223344677777777 5788999999876544332
Q ss_pred eccCCCCCCCCC-cceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 271 VDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 271 ~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
. + ...+.. ..++.+.|. +| .+.+..-.+..|.+.|..+++.. ..+..............-..-.+.++|
T Consensus 163 ~-V---~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~----~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 163 T-V---TAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVT----GIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp E-C---EETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEE----EEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred E-e---ccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEE----EEEECCcCccccccccCcCCceEEEEE
Confidence 1 1 011111 334567776 66 66666667889999999999863 333221100000000001135789999
Q ss_pred ccCCCEEEEec
Q 012535 350 ARNGRHILSRD 360 (461)
Q Consensus 350 s~~g~~l~s~~ 360 (461)
+|+++.|+..+
T Consensus 233 dp~~~~lfVTG 243 (262)
T 3nol_A 233 DKEHHRLFVTG 243 (262)
T ss_dssp ETTTTEEEEEE
T ss_pred cCCCCEEEEEC
Confidence 99877666644
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.36 E-value=7.3e-05 Score=62.62 Aligned_cols=189 Identities=10% Similarity=0.106 Sum_probs=112.7
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccc-ccCCCcchhhccccccccce
Q 012535 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE-FQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~v 115 (461)
-...+.|+ ++.++.+.+.+|.|+++|+.+++.. .. +... .--
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~-----------------------~~~l~~~-------------~Fg 98 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV-----------------------WMERLGN-------------IFA 98 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS-----------------------EEEECTT-------------CCE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE-----------------------eEECCCC-------------cce
Confidence 34688888 3566677778889999999998753 11 1111 012
Q ss_pred EEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCC
Q 012535 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (461)
..+++. . +..+++.-.++.+.+||.++.+.+..+..... .....++++.+
T Consensus 99 eGit~~--g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e------------------GwGLt~Dg~~L--------- 148 (268)
T 3nok_A 99 EGLASD--G-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE------------------GWGLCYWNGKL--------- 148 (268)
T ss_dssp EEEEEC--S-SCEEEEESSSCEEEEEETTTTEEEEEEECSSC------------------CCCEEEETTEE---------
T ss_pred eEEEEe--C-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc------------------eeEEecCCCEE---------
Confidence 335553 2 34555556889999999999988877665321 23445667764
Q ss_pred CccccccCCCcEEeeeeecccCccccceeeEeeeccc-ccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeecc
Q 012535 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
+.+..++.|.++| .++............+. -..++.+.|. +|+.++.. .+..|.+.|.++++.. ..+++
T Consensus 149 ---~vSdGs~~l~~iD----p~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl 219 (268)
T 3nok_A 149 ---VRSDGGTMLTFHE----PDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDA 219 (268)
T ss_dssp ---EEECSSSEEEEEC----TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEEC
T ss_pred ---EEECCCCEEEEEc----CCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEEC
Confidence 6556688999888 22222211111111111 1234566666 77666666 6889999999866533 33332
Q ss_pred CC---CC---CCCCCcceEEEEEeCCCCCeEEEE
Q 012535 274 KP---AN---MEDLTEVITSAEFHPTHCNMLAYS 301 (461)
Q Consensus 274 ~~---~~---~~~~~~~v~~v~~~p~~~~~l~~~ 301 (461)
.. .. .....+-.+.|+++|++.+++++|
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 21 00 111234678999999885666665
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.35 E-value=0.00098 Score=58.51 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=58.7
Q ss_pred eEEEEEeCCCCCeEEEEecCCeEEEEECCC-cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CC
Q 012535 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM 362 (461)
Q Consensus 285 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~ 362 (461)
.+.+ +|++..++++-...+.|..||+.. +.... ...+... .....++++++|++.++.. .+
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~--~~~~~~~-------------~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE--PEIFVEQ-------------TNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC--CEEEEES-------------CCCSSEEEBTTCCEEEECBTTC
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc--cEEEecc-------------CCCCCeEECCCCCEEEEeCCCC
Confidence 4455 788733455555678999999875 32110 1111100 2356789999998766644 48
Q ss_pred eEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEe---cCCCEEEEecCC
Q 012535 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS---GDGGRVATGSYS 419 (461)
Q Consensus 363 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~d 419 (461)
.|.++|.. ++.......... . ....+++|. ++++.|+.++..
T Consensus 234 ~V~~~~~~--G~~~~~~~~~~~-~------------~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 234 SVVRIAPD--RSTTIIAQAEQG-V------------IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CEEEECTT--CCEEEEECGGGT-C------------TTEEEEEECCSTTTTTEEEEEECT
T ss_pred eEEEECCC--CCEEEEeecccc-c------------CCceEEEEecccCCCCEEEEECCC
Confidence 89999864 443221111111 0 012489998 887776665543
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.0011 Score=66.75 Aligned_cols=312 Identities=10% Similarity=0.007 Sum_probs=166.3
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccc-cCCCcchhhcccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~ 113 (461)
...|.++...++|. |..|+..+-|.+++..+..... ... +.+..+... .... ....
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-----~~~--------~~f~~~~~~~~~~~---------l~~~ 313 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLL-----PEQ--------IRFEFIREGDNNYS---------LSNA 313 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC----------------------CEEECBCSSTTS---------BSSS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeee-----eec--------cccccccCCCCCCC---------CCCC
Confidence 35699999988885 5556664568888877654210 000 000000000 0000 0014
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeec-CCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
.|.++... .+| .|-.|+.++-|..++...+.......... .....+....|. ++...++|..
T Consensus 314 ~v~~i~~D--~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-------~i~~d~~g~l------- 376 (781)
T 3v9f_A 314 SARYIFQD--SFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-------SVCDDGQGKL------- 376 (781)
T ss_dssp CEEEEEEC--SSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-------EEEECTTSCE-------
T ss_pred eEEEEEEe--CCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-------EEEEcCCCCE-------
Confidence 58888876 444 46677777778889887665444321110 001111122233 4444455553
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeec
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (461)
..|+.++.|..|+ . ........... .......|.++...+++.+.+...++.|..++..+.. +..+.
T Consensus 377 ------Wigt~~~Gl~~~~-~---~~~~~~~~~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~ 443 (781)
T 3v9f_A 377 ------WIGTDGGGINVFE-N---GKRVAIYNKEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK--FQIIE 443 (781)
T ss_dssp ------EEEEBSSCEEEEE-T---TEEEEECC------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE--EEECC
T ss_pred ------EEEeCCCcEEEEE-C---CCCeEEEccCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc--EEEec
Confidence 6677667788777 2 11100000000 0123356888988888887765566678888876432 11110
Q ss_pred cCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC
Q 012535 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (461)
Q Consensus 273 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 352 (461)
........|.++...+++ . |..|+. +-|..||..+++.. .+...... ......|.++...++
T Consensus 444 ----~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~-----~~~~~~~~------~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 444 ----LEKNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKVI-----HHYDTSNS------QLLENFVRSIAQDSE 505 (781)
T ss_dssp ----STTTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSCC-----EEECTTTS------SCSCSCEEEEEECTT
T ss_pred ----cCCCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeEE-----ecccCccc------ccccceeEEEEEcCC
Confidence 001134678999988887 4 555555 56889998776531 11110000 000156899999999
Q ss_pred CCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 353 g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
|++.++...+-+..||... ..+..+....+. ....|.++...++|.+.++.. +|.|..||..+++
T Consensus 506 g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l-----------~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 506 GRFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF-----------CSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp CCEEEEESSSCEEEECTTC--CEEEEECTTTTC-----------SCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred CCEEEEEcCCCEEEEeCCC--CeEEEccCCCCC-----------CCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 9887776544577788763 333333321111 011245788888888666554 6665888887664
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.0021 Score=58.39 Aligned_cols=207 Identities=10% Similarity=-0.019 Sum_probs=117.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..+..++|.+. ++.++.+-...+.|..+++..+....+..... ..|..+++.+.+..+
T Consensus 116 ~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------------~~p~glavd~~~g~l------ 173 (386)
T 3v65_B 116 ENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------------ESPGGLAVDWVHDKL------ 173 (386)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCCEEEEECSSC---------------SCCCCEEEETTTTEE------
T ss_pred CccEEEEEecC-CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC---------------CCccEEEEEeCCCeE------
Confidence 34789999853 34444455677899999988765444332111 112267777655543
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC-CeEEEEEccCCCCcee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD-LRINLWNLEISNQSFN 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~ 269 (461)
+++-...+.|.+.+ + +... ...+..........++++|.+..|..+ .. +.|..++++... ...
T Consensus 174 -----Y~~d~~~~~I~~~~-~---dg~~----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~ 239 (386)
T 3v65_B 174 -----YWTDSGTSRIEVAN-L---DGAH----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRI 239 (386)
T ss_dssp -----EEEETTTTEEEECB-T---TSCS----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred -----EEEcCCCCeEEEEe-C---CCCc----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEE
Confidence 24445556777665 2 2211 111123333567899999876666655 34 788888887432 222
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+. ...-...+.|+++|++.++.++-...+.|..+|+..... ..+.... .....++++
T Consensus 240 ~~-------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~-----------~~~P~giav 296 (386)
T 3v65_B 240 IA-------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-----KAVISQG-----------LPHPFAITV 296 (386)
T ss_dssp EE-------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-----EEEECSS-----------CSSEEEEEE
T ss_pred EE-------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-----EEEEECC-----------CCCceEEEE
Confidence 11 122345789999987635555555678899999865321 1111110 134567777
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEe
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 380 (461)
. .+.++++-. .+.|..+|..+ ++.+..+.
T Consensus 297 ~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 326 (386)
T 3v65_B 297 F-EDSLYWTDWHTKSINSANKFT-GKNQEIIR 326 (386)
T ss_dssp E-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred E-CCEEEEeeCCCCeEEEEECCC-CcceEEEc
Confidence 3 343434433 48888888554 56555554
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=0.0011 Score=66.09 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=24.9
Q ss_pred ceEEEEEc-CCCCEEEEeec-CC----cEEEEEcCCC
Q 012535 37 IISAIEFD-KSGDHLATGDR-GG----RVVLFERTDT 67 (461)
Q Consensus 37 ~V~~~~~s-~~g~~l~tg~~-dg----~i~iw~~~~~ 67 (461)
.+...+|| |||++||.+.. +| .|+++|+.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g 211 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP 211 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence 67889999 99999886543 23 4999999887
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.25 E-value=0.00012 Score=72.01 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=48.5
Q ss_pred EEEEcC-CCCEEEEeecCC-----------cEEEEEcCCCCCCCCcccccccccccccCCcccccccccc-CCCcchhhc
Q 012535 40 AIEFDK-SGDHLATGDRGG-----------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYL 106 (461)
Q Consensus 40 ~~~~s~-~g~~l~tg~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~ 106 (461)
++++.+ +|++++.|+.+. .+.+||..+++.. .+..+. .+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~---------------------~~~~~~~~~~------ 242 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS---------------------DRTVTVTKHD------ 242 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC---------------------CCEEEECSCC------
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE---------------------eCcccCCCCC------
Confidence 556667 888888887543 5788888776532 111111 111
Q ss_pred cccccccceEEEEEeecCCCcEEEEEe-CCCeEEEEEccCCceeEE
Q 012535 107 KSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKV 151 (461)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~ 151 (461)
....++++. .++.+++.|+ .+..+.+||..+++....
T Consensus 243 ------~~~~~~~~~--~~g~lyv~GG~~~~~v~~yd~~t~~W~~~ 280 (656)
T 1k3i_A 243 ------MFCPGISMD--GNGQIVVTGGNDAKKTSLYDSSSDSWIPG 280 (656)
T ss_dssp ------CSSCEEEEC--TTSCEEEECSSSTTCEEEEEGGGTEEEEC
T ss_pred ------CccccccCC--CCCCEEEeCCCCCCceEEecCcCCceeEC
Confidence 123345665 5677888887 456899999998876554
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.25 E-value=0.0018 Score=62.26 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=38.1
Q ss_pred CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 361 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+|.|..||+.+ ++.+-........ +.-.....+.+++.|+.||.++.||.++|+++
T Consensus 465 ~G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 37788899886 6665555433211 12222335677888999999999999999765
No 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.24 E-value=0.0016 Score=59.48 Aligned_cols=237 Identities=7% Similarity=0.001 Sum_probs=132.0
Q ss_pred EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcE
Q 012535 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (461)
Q Consensus 128 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 207 (461)
+|+.+ ....|+..++.......+.... ..+. .++|++....+ +++-...+.|
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~---------~~~~-------~l~~d~~~~~l-----------ywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNL---------RNVV-------ALDTEVASNRI-----------YWSDLSQRMI 136 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSC---------SCEE-------EEEEETTTTEE-----------EEEETTTTEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecccc---------Ccce-------EEeeeeccCce-----------EEEecCCCeE
Confidence 44444 3467888888776544433211 1122 67888766554 2444456677
Q ss_pred EeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcce
Q 012535 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (461)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (461)
..++ +..... ..............+..+++.+.+..|..+ ..+.|.+.+++.. ....+ +.......
T Consensus 137 ~~~~-~~g~~~---~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~-~~~~l-------~~~~~~~P 204 (400)
T 3p5b_L 137 CSTQ-LDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTL-------FRENGSKP 204 (400)
T ss_dssp EEEE-C---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC-SEEEE-------EECSSCCE
T ss_pred EEEE-cccCCC---CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC-ceEEE-------EeCCCCCc
Confidence 7666 322110 000111112233567789999855555544 5889999988733 22222 11233457
Q ss_pred EEEEEeCCCCCeEEEEe-c-CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--C
Q 012535 286 TSAEFHPTHCNMLAYSS-S-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y 361 (461)
Q Consensus 286 ~~v~~~p~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d 361 (461)
..|+++|.+ ..|+... . .+.|...++..... ..+.... ......|++++++..|+.++ .
T Consensus 205 ~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~-----~~~~~~~-----------l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 205 RAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp EEEEEETTT-TEEEEEECSSSCCEEEEETTSCSC-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTT
T ss_pred ceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCcc-----EEEEECC-----------CCceEEEEEEeCCCEEEEEECCC
Confidence 899999976 4554443 2 37788888865432 1111110 14578999999888888765 3
Q ss_pred CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcccee
Q 012535 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT 436 (461)
Q Consensus 362 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 436 (461)
+.|..+|+. +.....+........ .-..+++. .+.++.+-...+.|..++..+|+.....
T Consensus 268 ~~I~~~d~d--G~~~~~~~~~~~~l~------------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 268 HSISSIDVN--GGNRKTILEDEKRLA------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp TEEEEEETT--SCCCEEEEECSSTTS------------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CEEEEEeCC--CCccEEEEeCCCCCC------------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 889999986 333333322111000 01266663 3455566667788999997777655333
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00065 Score=56.38 Aligned_cols=192 Identities=12% Similarity=0.118 Sum_probs=109.5
Q ss_pred cceEEEEEcCCCCEEEEeecC--CcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 36 DIISAIEFDKSGDHLATGDRG--GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
.-...+.|++ +.++.+.+.+ ..|+.+|+.+++.. ....-... .
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-----------------------~~~~l~~~-----------~ 65 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-----------------------QRAEVPPP-----------Y 65 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-----------------------EEEECCTT-----------C
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-----------------------EEEeCCCC-----------c
Confidence 4466899986 5555555554 48999999988642 11111100 0
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
--..++.. . ++.+.+.-.++.+.++|.++.+.+..+..... ...+.++++.+
T Consensus 66 fgeGi~~~--~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~------------------Gwglt~dg~~L------- 117 (243)
T 3mbr_X 66 FGAGIVAW--R-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE------------------GWALTSDDSHL------- 117 (243)
T ss_dssp CEEEEEEE--T-TEEEEEESSSSEEEEEETTTTEEEEEEECSSC------------------CCEEEECSSCE-------
T ss_pred ceeEEEEe--C-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC------------------ceEEeeCCCEE-------
Confidence 01334444 2 44555556899999999999888777665321 33445666664
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccc-cceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (461)
+.+..++.|.++| .++............+.. ..++.+.+. +|+.++.. .+..|.+.|.++++.. ..+
T Consensus 118 -----~vSdgs~~l~~iD----p~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~i 186 (243)
T 3mbr_X 118 -----YMSDGTAVIRKLD----PDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWI 186 (243)
T ss_dssp -----EEECSSSEEEEEC----TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEE
T ss_pred -----EEECCCCeEEEEe----CCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEE
Confidence 6666688899888 222221111111111111 234455554 66666666 6889999999866543 333
Q ss_pred ccC---CCCC---CCCCcceEEEEEeCCCCCeEEEE
Q 012535 272 DVK---PANM---EDLTEVITSAEFHPTHCNMLAYS 301 (461)
Q Consensus 272 ~~~---~~~~---~~~~~~v~~v~~~p~~~~~l~~~ 301 (461)
++. +... ....+-.+.|+++|++.+++++|
T Consensus 187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 322 1110 11234678999999884555554
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.23 E-value=9.8e-05 Score=61.87 Aligned_cols=159 Identities=11% Similarity=-0.041 Sum_probs=101.5
Q ss_pred ccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
......+.|+. +.++++. .+|.|+.+|+++++....+ +. ....-..+++. +.++.+..-.++.+.+||
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~------~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RL------GNIFAEGLASD--GERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--EC------TTCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CC------CCcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence 34456888873 4455555 7888999999987766543 11 11111234554 325666666799999999
Q ss_pred CCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
..+.+. +.++.... .=..++ +|++.|+.++ ++.|.++|..+ .+.+..+........
T Consensus 123 ~~Tl~~----~~ti~~~~-------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~--- 179 (268)
T 3nok_A 123 GMPPQR----ERTTRYSG-------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP--- 179 (268)
T ss_dssp TTTTEE----EEEEECSS-------------CCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE---
T ss_pred CCcCcE----EEEEeCCC-------------ceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc---
Confidence 999876 34444321 112333 5788887765 58999999986 777777765332110
Q ss_pred ccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+..+..+.|. +|+..+..-.++.|.+-|.++++..
T Consensus 180 -------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 180 -------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp -------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred -------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence 1111256777 7776666656889999999999765
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.003 Score=63.45 Aligned_cols=300 Identities=10% Similarity=0.069 Sum_probs=161.5
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
...|.++...++|. |-.|+.++-|..++....... . . . ..+.......+.. ..
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~----~-~---~----~~~~~~~~~~l~~--------------~~ 364 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFH----T-W---S----YSPTQMNESSLSN--------------KV 364 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCE----E-E---C--------CCCSSCCSS--------------SC
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcce----e-e---c----cCccccccCCCCC--------------cc
Confidence 46799999999885 556776777888887654311 0 0 0 0000000000111 44
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
|.++... .++ .|..|+.++-|..|+..++....... ........|. ++...++|..
T Consensus 365 v~~i~~d--~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~-----~~~~~~~~v~-------~i~~d~~g~l--------- 420 (781)
T 3v9f_A 365 VSSVCDD--GQG-KLWIGTDGGGINVFENGKRVAIYNKE-----NRELLSNSVL-------CSLKDSEGNL--------- 420 (781)
T ss_dssp EEEEEEC--TTS-CEEEEEBSSCEEEEETTEEEEECC----------CCCSBEE-------EEEECTTSCE---------
T ss_pred eEEEEEc--CCC-CEEEEeCCCcEEEEECCCCeEEEccC-----CCCCCCcceE-------EEEECCCCCE---------
Confidence 8888876 444 46677766778889987654332210 0011122233 3444445553
Q ss_pred CCccccccCCCcEEeeeeecccCccccceeeEeee-cccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeecc
Q 012535 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 273 (461)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (461)
..|+.++.+..++ . ... ....... ......|.++...+++.+.+... +-|..+|..+.... .....
T Consensus 421 ----Wigt~~~Gl~~~~-~---~~~---~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~-~~~~~ 487 (781)
T 3v9f_A 421 ----WFGTYLGNISYYN-T---RLK---KFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI-HHYDT 487 (781)
T ss_dssp ----EEEETTEEEEEEC-S---SSC---EEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC-EEECT
T ss_pred ----EEEeccCCEEEEc-C---CCC---cEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE-ecccC
Confidence 5566666677776 2 111 1111100 11335788888888887655546 56888988754322 11100
Q ss_pred CCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCC
Q 012535 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (461)
Q Consensus 274 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g 353 (461)
. ........|.++...++| . |..|+.++-+..||..+++. ..+...... ....|.++...++|
T Consensus 488 ~--~~~~~~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~-----~~~~~~~~l--------~~~~i~~i~~d~~g 550 (781)
T 3v9f_A 488 S--NSQLLENFVRSIAQDSEG-R-FWIGTFGGGVGIYTPDMQLV-----RKFNQYEGF--------CSNTINQIYRSSKG 550 (781)
T ss_dssp T--TSSCSCSCEEEEEECTTC-C-EEEEESSSCEEEECTTCCEE-----EEECTTTTC--------SCSCEEEEEECTTS
T ss_pred c--ccccccceeEEEEEcCCC-C-EEEEEcCCCEEEEeCCCCeE-----EEccCCCCC--------CCCeeEEEEECCCC
Confidence 0 001124678999999887 4 45556544577788876542 222111100 01568999999999
Q ss_pred CEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCC
Q 012535 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (461)
Q Consensus 354 ~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 430 (461)
.+.++...|-+..||..+ ..+..+....+.. .+. |.++...++|.+.+++ .+| |..|+..++
T Consensus 551 ~lWi~T~~Glv~~~d~~~--~~~~~~~~~~gl~--------~~~---i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 551 QMWLATGEGLVCFPSARN--FDYQVFQRKEGLP--------NTH---IRAISEDKNGNIWAST-NTG-ISCYITSKK 612 (781)
T ss_dssp CEEEEETTEEEEESCTTT--CCCEEECGGGTCS--------CCC---CCEEEECSSSCEEEEC-SSC-EEEEETTTT
T ss_pred CEEEEECCCceEEECCCC--CcEEEccccCCCC--------Cce---EEEEEECCCCCEEEEc-CCc-eEEEECCCC
Confidence 877776655548888764 3344443322211 111 2377788888766654 344 556666543
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.18 E-value=0.0032 Score=56.30 Aligned_cols=207 Identities=10% Similarity=-0.020 Sum_probs=116.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..+..++|.+. ++.++.+-...+.|..+++.++....+..... ..|..+++.+.+..+
T Consensus 73 ~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------------~~p~glavd~~~g~l------ 130 (349)
T 3v64_C 73 ENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------------ESPGGLAVDWVHDKL------ 130 (349)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCEEEEETTTTEE------
T ss_pred CceEEEEEecc-ccEEEEEeccCCceEEEecCCCCceEEEeCCC---------------CCccEEEEecCCCeE------
Confidence 33789999853 34444444577889999988765444322111 112267777655543
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC-CeEEEEEccCCCCcee
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD-LRINLWNLEISNQSFN 269 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~ 269 (461)
+++-...+.|.+.+ + +... ..............++++|.+..|..+ .. +.|...+++... ...
T Consensus 131 -----y~~d~~~~~I~~~~-~---dG~~----~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~ 196 (349)
T 3v64_C 131 -----YWTDSGTSRIEVAN-L---DGAH----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRI 196 (349)
T ss_dssp -----EEEETTTTEEEEEE-T---TSCS----CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred -----EEEcCCCCeEEEEc-C---CCCc----eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEE
Confidence 24445566777766 2 2211 111222333567899999976655554 44 788888887432 221
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEE
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 349 (461)
+ ....-...+.++++|++..+.++-...+.|..+|+..... ..+.... .....++++
T Consensus 197 ~-------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-----~~~~~~~-----------~~~P~giav 253 (349)
T 3v64_C 197 I-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-----KAVISQG-----------LPHPFAITV 253 (349)
T ss_dssp S-------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSS-----------CSSEEEEEE
T ss_pred E-------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-----EEEEeCC-----------CCCceEEEE
Confidence 1 1123345789999987734555555678899999875321 1111110 134567777
Q ss_pred ccCCCEEEEec-CCeEEEEEccCCCCCeeEEe
Q 012535 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 350 s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 380 (461)
. ++...++-. .+.|..++..+ ++....+.
T Consensus 254 ~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 283 (349)
T 3v64_C 254 F-EDSLYWTDWHTKSINSANKFT-GKNQEIIR 283 (349)
T ss_dssp E-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred E-CCEEEEecCCCCeEEEEEccC-CCccEEec
Confidence 3 343333332 48888888543 55544443
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.16 E-value=0.002 Score=61.98 Aligned_cols=80 Identities=10% Similarity=0.146 Sum_probs=45.6
Q ss_pred EEeCCCCCEEEEe-CC----------------CeEEEEEccCCCCceeeeccCCC--CCCCCCcceEEEEEe-CCCC--C
Q 012535 239 ISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKPA--NMEDLTEVITSAEFH-PTHC--N 296 (461)
Q Consensus 239 i~~~~~~~~l~~~-~d----------------~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~~-p~~~--~ 296 (461)
+++.+...++..+ .+ +.|..+|.++++........... .+......+ -+... .+|. .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEE
Confidence 4556666666666 44 37888999887765543110000 000111111 12222 4442 3
Q ss_pred eEEEEecCCeEEEEECCCccccc
Q 012535 297 MLAYSSSKGSIRLIDMRQSALCD 319 (461)
Q Consensus 297 ~l~~~~~dg~i~iwd~~~~~~~~ 319 (461)
.++.++.+|.+.++|.++++.+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECCCcEEEEEECCCCCEee
Confidence 57778899999999999998753
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.0023 Score=59.07 Aligned_cols=267 Identities=10% Similarity=0.027 Sum_probs=136.6
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
....|+|.|..++..|+.+...+.|+.++..++......... ..|..++++++|...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~----------------~~P~giavd~dG~ly------- 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI----------------GQCADVNFTLNGDMV------- 196 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC----------------SCEEEEEECTTCCEE-------
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC----------------CCccEEEECCCCCEE-------
Confidence 356889985302235555544489999999887765543311 112278899999842
Q ss_pred CCCccccccCC---C-cEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 194 SNDSSFPPGGV---S-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 194 ~~~~~~~~~~~---~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
++.... . .+...+ . ...... ... .........++++| ++.++++- .++.|+.+|..++...
T Consensus 197 -----Vad~~~~~~~~gv~~~~---~-~~~~~~--~~~--~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~ 263 (433)
T 4hw6_A 197 -----VVDDQSSDTNTGIYLFT---R-ASGFTE--RLS--LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT 263 (433)
T ss_dssp -----EEECCSCTTSEEEEEEC---G-GGTTCC--EEE--EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred -----EEcCCCCcccceEEEEE---C-CCCeec--ccc--ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence 322211 1 122222 1 111110 011 11224567789999 67666665 6889999998744331
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCC-eEEEEecCCeEEEEECCC--cccccccccccccc-cCCCcc--ccccccc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ-EAPGTR--SFFTEII 341 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~-~~~~~~--~~~~~h~ 341 (461)
..+.. .. .......++|+|++ + ++++-...+.|+.+++.. +.... ...+.+. ...... ......-
T Consensus 264 ~~~~~-----~~-~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 264 EEEVM-----MD-TKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLAV--PYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp EEEEE-----CS-CCSSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBCC--CEEEEECTTCCCCBCEEGGGSBC
T ss_pred EEEec-----cC-CCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccCc--EEEEEecCCCCccCCCcccceEE
Confidence 22211 11 12223479999999 6 555555678999988653 22100 1111111 000000 0000011
Q ss_pred cceeEEEE---------ccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC--ccccccc-cccCCCccceeeEEEe-
Q 012535 342 ASISDIKF---------ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLS- 407 (461)
Q Consensus 342 ~~v~~l~~---------s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s- 407 (461)
.....+++ .++|.+.++-. .+.|+.++.. + .+.++.+... ....... .........-..++++
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 34678999 66666665533 3889988842 4 4444443321 0000000 0000111122489999
Q ss_pred cCCCEEEEecCCCeEEEEecC
Q 012535 408 GDGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 408 ~~~~~l~s~~~dg~i~iw~~~ 428 (461)
+++.++++=...++|+.++++
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEecC
Confidence 677777776777888888764
No 269
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.15 E-value=0.0014 Score=64.35 Aligned_cols=63 Identities=6% Similarity=0.071 Sum_probs=42.4
Q ss_pred CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec
Q 012535 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
+|.|..||+.+++..++ .... .......+...+.+++.++ ++.++.||.++ ++.+..++..
T Consensus 437 ~g~l~A~D~~tG~~~W~----~~~~-------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWK----VPYP-------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEE----EEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEE----ccCC-------------CCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecCC
Confidence 47899999999886433 2211 1222233444677777776 69999999996 8888888765
Q ss_pred cC
Q 012535 383 EH 384 (461)
Q Consensus 383 ~~ 384 (461)
..
T Consensus 499 ~~ 500 (668)
T 1kv9_A 499 SG 500 (668)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 270
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0043 Score=61.67 Aligned_cols=214 Identities=8% Similarity=-0.015 Sum_probs=120.0
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (461)
.+++.+....+ +++-...+.|+.++ +...... .. ....+......+..|++.+.+..|..+ ..
T Consensus 428 gl~~d~~~~~l-----------Y~sD~~~~~I~~~~-l~g~~~~--~~-~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~ 492 (791)
T 3m0c_C 428 ALDTEVASNRI-----------YWSDLSQRMICSTQ-LDRAHGV--SS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 492 (791)
T ss_dssp EEEEETTTTEE-----------EEEETTTTEEEEEE-C-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred EEeecccCCee-----------EEeeccceeEEEEe-ccCCCCC--cc-eeEEEecCCCCcceeeeeecCCcEEEEecCC
Confidence 56777755443 34445556677666 3221100 01 111123234567789999887666655 58
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe-cC-CeEEEEECCCcccccccccccccccCC
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-GSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
+.|.+.++... ....++ .........|+++|.+ ..|+... .. +.|...++..... ..+....
T Consensus 493 ~~I~v~~ldG~-~~~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~-----~~lv~~~-- 556 (791)
T 3m0c_C 493 GTVSVADTKGV-KRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-- 556 (791)
T ss_dssp TEEEEEETTSS-SEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCE-----EEEECSS--
T ss_pred CeEEEEeCCCC-eEEEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCce-----EEEEeCC--
Confidence 89999998733 322221 1233457899999986 4555444 33 7888888875432 2221111
Q ss_pred CccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEe-eccCccccccccccCCCccceeeEEEec
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
......|++++.+..|+.++ .+.|...++. +.....+. ....... -+.|++..
T Consensus 557 ---------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~~-------------P~glav~~ 612 (791)
T 3m0c_C 557 ---------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAH-------------PFSLAVFE 612 (791)
T ss_dssp ---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTSS-------------EEEEEEET
T ss_pred ---------CCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccCC-------------CCEEEEeC
Confidence 14578999998777777765 3789999886 44443332 2211110 12566642
Q ss_pred CCCEEEEecCCCeEEEEecCCCCccceeeccCCCCCc
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMS 445 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 445 (461)
+.++++-...+.|...+..+|+...........|..
T Consensus 613 -~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~ 648 (791)
T 3m0c_C 613 -DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPED 648 (791)
T ss_dssp -TEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCC
T ss_pred -CEEEEEECCCCEEEEEeCCCCcceEEeecCCCCcee
Confidence 345555566788888888777655444433333433
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.09 E-value=0.0033 Score=52.89 Aligned_cols=213 Identities=7% Similarity=0.045 Sum_probs=118.1
Q ss_pred cceEEEEEcCCCC-EEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCcccccccc--ccCCCcchhhccccccc
Q 012535 36 DIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE--FQSHEPEFDYLKSLEIE 112 (461)
Q Consensus 36 ~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~~~~~ 112 (461)
+.+..++|+|+++ ++++...++.|...|.. ++. ... +.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-----------------------~~~i~l~g~------------- 69 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-----------------------IRTIPLDFV------------- 69 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-----------------------EEEEECSSC-------------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-----------------------EEEEecCCC-------------
Confidence 5699999999766 45557778888888876 331 111 2222
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeE-EeeeecCCCccCCCCCccccccccCcceeecCCCccccccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 191 (461)
.....|++. +++.++++.-.++.+.++++....... .......-.....+.. ..+++|.|.+..+
T Consensus 70 ~D~EGIa~~--~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g-------~EGLA~d~~~~~L----- 135 (255)
T 3qqz_A 70 KDLETIEYI--GDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCG-------FEGLAYSRQDHTF----- 135 (255)
T ss_dssp SSEEEEEEC--STTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSC-------CEEEEEETTTTEE-----
T ss_pred CChHHeEEe--CCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCC-------cceEEEeCCCCEE-----
Confidence 226788887 566665665577889999887544211 1111110000001111 2288999998765
Q ss_pred CCCCCccccccCCCcEEeeeeecccCccccceeeEe--e-ecccccceeeEEeCCCC-CEEEEe-CCCeEEEEEccCCCC
Q 012535 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI--Y-AHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ 266 (461)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~-~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~ 266 (461)
+++.+.....+|. +.............. + ...+...+.+++++|.. ++++.+ ....|.++|.. ++
T Consensus 136 -------~va~E~~p~~i~~-~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~- 205 (255)
T 3qqz_A 136 -------WFFKEKNPIEVYK-VNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GE- 205 (255)
T ss_dssp -------EEEEESSSEEEEE-EESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CC-
T ss_pred -------EEEECcCCceEEE-EcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CC-
Confidence 5555555566666 321100000000000 0 01123457889999974 455556 68999999976 33
Q ss_pred ceeeeccCC--CCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 267 SFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 267 ~~~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
......+.+ ..+...-.....|+|.++| ++.++ +.-..+..+.
T Consensus 206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEE
T ss_pred EEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEE
Confidence 444443321 0111122466899999998 65444 6666655554
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.0028 Score=58.52 Aligned_cols=266 Identities=9% Similarity=0.032 Sum_probs=134.1
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
....|+++|. ++..|+++...+.|+.+|++.+....+.... . .|..++++++|+.+
T Consensus 138 ~P~~lavdp~-~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~---------~-------~P~~ia~d~~G~~l------- 193 (430)
T 3tc9_A 138 GAVWLSFDPK-NHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL---------S-------KVRTICWTHEADSM------- 193 (430)
T ss_dssp CCCEEEEETT-EEEEEEEEEBTEEEEEEETTTTEEEEEECCC---------S-------CEEEEEECTTSSEE-------
T ss_pred CCCEEEECCC-CCCeEEEEeCCCcEEEEECCCCEEEEEecCC---------C-------CcceEEEeCCCCEE-------
Confidence 3578899841 2345666655588999999887655543311 1 12278999999854
Q ss_pred CCCccccccCCC----cEEeeeeecccCccccceeeEeeecccccceeeEEeCC-CCCEEEEe-CCCeEEEEEccCCCCc
Q 012535 194 SNDSSFPPGGVS----SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 267 (461)
Q Consensus 194 ~~~~~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (461)
+++...++ .+..++ . +...... ..+ . .......++++| ++.++++- .++.|..++......
T Consensus 194 ----yvad~~~~~~~~~v~~~~--~--~g~~~~~--~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~- 260 (430)
T 3tc9_A 194 ----IITNDQNNNDRPNNYILT--R--ESGFKVI--TEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET- 260 (430)
T ss_dssp ----EEEECCSCTTSEEEEEEE--G--GGTSCSE--EEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-
T ss_pred ----EEEeCCCCcccceEEEEe--C--CCceeee--eee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-
Confidence 23332222 222222 1 1111100 111 1 124567889999 67766666 688999999874332
Q ss_pred eeeeccCCCCCCCCCcceEEEEEeCCCCC-eEEEEecCCeEEEEECCCc--ccccccccccccc-cCCCccc--cccccc
Q 012535 268 FNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQ-EAPGTRS--FFTEII 341 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~-~~~~~~~--~~~~h~ 341 (461)
..+. ... .......++|+|++ + ++++-...+.|..++.... ... ....+.+. ....... .....-
T Consensus 261 ~~~~-----~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~ 331 (430)
T 3tc9_A 261 TPLF-----TIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDYDWKTKRLT--TPYIVCGQQGAKDWVDGVGKKARM 331 (430)
T ss_dssp EEEE-----ECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEECTTCBCCBCEEGGGCBB
T ss_pred EEEE-----EcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeCCccccccc--ceEEEeccCCCCCCCCCCCcceEe
Confidence 1111 111 12456899999999 7 5555566788999876532 110 01111111 0000000 000001
Q ss_pred ccee-EEEEc--------cCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC--ccccccc-cccCCCccceeeEEEec
Q 012535 342 ASIS-DIKFA--------RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLSG 408 (461)
Q Consensus 342 ~~v~-~l~~s--------~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s~ 408 (461)
.... .+... ++|.+.++-. .+.|+.++.. + .+..+.+... ....... .........-..+++++
T Consensus 332 ~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~--G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 408 (430)
T 3tc9_A 332 HAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ--G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE 408 (430)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT--S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred CCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC--C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence 1233 45553 3354444422 3788888832 4 3444443210 0000000 00000111225899999
Q ss_pred C-CCEEEEecCCCeEEEEecC
Q 012535 409 D-GGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 409 ~-~~~l~s~~~dg~i~iw~~~ 428 (461)
+ +.++++-...++|+.++++
T Consensus 409 ~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 ERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEccC
Confidence 4 6666666677888888764
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.09 E-value=0.00045 Score=57.35 Aligned_cols=159 Identities=9% Similarity=0.029 Sum_probs=99.7
Q ss_pred ccceeeEEeCCCCCEEEEe-C--CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEE
Q 012535 233 DYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 309 (461)
......+.|+. +.++.+. . ...|+.+|+.+++....+ .+..+. .-..+++. +.++....-.++.+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~~-fgeGi~~~--~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPPY-FGAGIVAW--RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTTC-CEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCCc-ceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 34566888986 5555554 3 469999999977655433 122111 11234444 3256666667999999
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC--cc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH--LR 386 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~--~~ 386 (461)
||..+.+. +.++.... ....++++++.|+.++ ++.|.++|..+ .+.+..+..... .+
T Consensus 90 ~D~~tl~~----~~ti~~~~---------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 90 YDLATLTP----RARFRYPG---------------EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPL 149 (243)
T ss_dssp EETTTTEE----EEEEECSS---------------CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEEC
T ss_pred EECCcCcE----EEEEeCCC---------------CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCccc
Confidence 99998876 44444321 1123345677666654 48999999986 677777765332 11
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccc
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 434 (461)
.. +..+.|. +|+..+..-.+..|.+-|.++++...
T Consensus 150 ~~------------lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 150 DN------------LNELEWV-NGELLANVWLTSRIARIDPASGKVVA 184 (243)
T ss_dssp CC------------EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred cc------------ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence 11 1256665 67766666567899999999998653
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.0049 Score=56.89 Aligned_cols=255 Identities=11% Similarity=0.070 Sum_probs=129.1
Q ss_pred ceEEEEEcC-CCCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 37 ~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
....|+++| ++..|.++...+.|+.+|..++.. ..+.... ...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v------------------------~~~~~~~------------~~P 181 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV------------------------STVYSGL------------SKV 181 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE------------------------EEEECCC------------SCE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE------------------------EEEecCC------------CCc
Confidence 457899998 455677766657889999876431 1111111 347
Q ss_pred EEEEEeecCCCcEEEEEeC-CC----eEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeec-CCCccccc
Q 012535 116 NKIRWCQSANSALYLLSTN-DK----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERN 189 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~-d~----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g~~~~~~ 189 (461)
..|+|+ +++++|+++.. ++ .+.+.+ ..+.......... ...|..++++| +|..
T Consensus 182 ~~ia~d--~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~--------------~~~p~giavdp~~g~l---- 240 (430)
T 3tc9_A 182 RTICWT--HEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK--------------GQNCNGAETHPINGEL---- 240 (430)
T ss_dssp EEEEEC--TTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE--------------CSSCCCEEECTTTCCE----
T ss_pred ceEEEe--CCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc--------------CCCceEEEEeCCCCEE----
Confidence 899998 56776666643 22 233333 3333221111100 01122778888 5554
Q ss_pred ccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCc
Q 012535 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (461)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (461)
+++-..++.|..++ . +..... .....+.......++|+|++++|..+ ..+.|..++.+.....
T Consensus 241 --------yv~d~~~~~V~~~~-~---~~~~~~---~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~ 305 (430)
T 3tc9_A 241 --------YFNSWNAGQVFRYD-F---TTQETT---PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR 305 (430)
T ss_dssp --------EEEETTTTEEEEEE-T---TTTEEE---EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred --------EEEECCCCEEEEEE-C---CCCcEE---EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc
Confidence 25555667888877 2 221110 11112222457789999999955555 6889999887632111
Q ss_pred e---eeeccCC--CCCC------CCCcceE-EEEEe--------CCCCCeEEEEecCCeEEEEECCCccccccccccccc
Q 012535 268 F---NIVDVKP--ANME------DLTEVIT-SAEFH--------PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (461)
Q Consensus 268 ~---~~~~~~~--~~~~------~~~~~v~-~v~~~--------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (461)
+ ..+.-.. ..+. ..-.... .++.. +++ .+.++-...+.|+.++. .+.. .++.+
T Consensus 306 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v-----~~~~g 378 (430)
T 3tc9_A 306 LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRV-----TTFAG 378 (430)
T ss_dssp ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEE-----EEEEE
T ss_pred ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcE-----EEEEe
Confidence 1 1110000 0000 0011233 45553 345 55555556778888884 3432 22222
Q ss_pred ccC---CC--cc-ccccccccceeEEEEccCCCEEEEec--CCeEEEEEcc
Q 012535 328 QEA---PG--TR-SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDIN 370 (461)
Q Consensus 328 ~~~---~~--~~-~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~ 370 (461)
... .. .- ......-.....++++|++..|+.++ .+.|+.++++
T Consensus 379 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 379 RGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 100 00 00 00000113578999999544444443 3788888764
No 275
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.01 E-value=0.0017 Score=62.38 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=38.3
Q ss_pred CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec
Q 012535 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
+|.|..||+.+++..++ +... ..+.+..+...+..++.++ ++.|+.+|.++ ++.+-.++..
T Consensus 443 ~g~l~a~D~~tG~~~W~----~~~~-------------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t-G~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWT----KWEK-------------FAAWGGTLYTKGGLVWYATLDGYLKALDNKD-GKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEE----EEES-------------SCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEE----ecCC-------------CCccceeEEECCCEEEEEcCCCeEEEEECCC-CCEEEEEeCC
Confidence 47888899888876432 2211 1112222223345566665 69999999996 8888877754
Q ss_pred c
Q 012535 383 E 383 (461)
Q Consensus 383 ~ 383 (461)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 4
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.00 E-value=0.00041 Score=69.20 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=72.9
Q ss_pred ceeeEEeC-CCCCEEEEe-C-C----CeEEEEEccCC-CCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC--
Q 012535 235 HINSISNN-SDGETFISA-D-D----LRINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 304 (461)
Q Consensus 235 ~v~~i~~~-~~~~~l~~~-~-d----~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-- 304 (461)
.+...+|+ |||++|+.+ + + ..|+++|+.++ +.... .+ ......++|+|++ +.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~---~~~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KV---SGTNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CE---EEECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cc---cCceeeEEEecCC-CEEEEEEECCC
Confidence 56788999 999998865 2 3 25999999876 42110 11 1224578999999 777776665
Q ss_pred ---CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec----CCeEEEEEccC
Q 012535 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINM 371 (461)
Q Consensus 305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~----d~~i~vwd~~~ 371 (461)
..|.++++.++.... ...+.... ......+.|+|||++|+... ...|+++|+..
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~~-----------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEHN-----------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECCC-----------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCCEEEEEECCCCchhc--EEEEecCC-----------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 257788887654211 11111111 02356789999999988632 26788889875
No 277
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.98 E-value=0.00019 Score=70.69 Aligned_cols=204 Identities=8% Similarity=-0.044 Sum_probs=108.8
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (461)
.++|.+.+..+ +++-...+.|..++ +...... .............+..|++.+.+..|+.+ ..
T Consensus 410 gla~d~~~~~L-----------y~sD~~~~~I~~~~-~~g~~~~---~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 410 ALDTEVASNRI-----------YWSDLSQRMICSTQ-LDRAHGV---SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 474 (699)
T ss_dssp CCEEETTTTEE-----------EECCTTTTSBEEEE-SCCCCC----CCCCCBCCSCC--CCCEECCCSSSBCEECCTTT
T ss_pred EEccccccCeE-----------EEEecCCCeEEEEe-cCCCCCC---cceEEEEeCCCCCcceEEEEeeCCcEEEEeccC
Confidence 67888766554 34445567777776 3220000 00001111112345678888655444444 57
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-CeEEEEECCCcccccccccccccccCCC
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
+.|.++++... ....+ +.........++++|.+..++++-... +.|..+++..... ..+....
T Consensus 475 ~~I~v~d~dg~-~~~~l-------~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~l~~~~--- 538 (699)
T 1n7d_A 475 GTVSVADTKGV-KRKTL-------FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN--- 538 (699)
T ss_dssp SCEEEEBSSSC-CEEEE-------CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-----CEESCSS---
T ss_pred CeEEEEecCCC-ceEEE-------EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-----eEEEeCC---
Confidence 88999998733 22222 111224467889999762444443223 6777777654321 1111110
Q ss_pred ccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCC
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (461)
......|+|+|++..|+.++ .+.|..+++. +.....+........ + ...+++..+
T Consensus 539 --------l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~------~------P~glavd~~- 595 (699)
T 1n7d_A 539 --------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA------H------PFSLAVFED- 595 (699)
T ss_dssp --------CSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS------S------CCCCEEETT-
T ss_pred --------CCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC------C------ceEeEEECC-
Confidence 13467899999877666654 3789999986 333333321110000 0 025666544
Q ss_pred CEEEEecCCCeEEEEecCCCCcc
Q 012535 411 GRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 411 ~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.++++....+.|..++..+++..
T Consensus 596 ~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 596 KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp EEEEECSTTTCEEEEETTTEEEE
T ss_pred EEEEEeCCCCeEEEEEccCCCce
Confidence 45556666789999998777654
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.95 E-value=0.0085 Score=52.71 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=115.7
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (461)
.+.|.+.+..+ +.+-...+.|..++ +... .... .. ....-..+..+++.+.+..|..+ ..
T Consensus 39 ~ld~d~~~~~l-----------yw~D~~~~~I~r~~-~~g~---~~~~--~~-~~~~l~~p~glavd~~~g~ly~~d~~~ 100 (318)
T 3sov_A 39 AVDFVFSHGLI-----------YWSDVSEEAIKRTE-FNKT---ESVQ--NV-VVSGLLSPDGLACDWLGEKLYWTDSET 100 (318)
T ss_dssp EEEEEGGGTEE-----------EEEETTTTEEEEEE-TTSS---SCCC--EE-EEECCSCCCEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCCCEE-----------EEEECCCCcEEEEE-ccCC---CceE--EE-EcCCCCCccEEEEEcCCCeEEEEECCC
Confidence 66788765543 24445566777666 3221 1000 01 11122456788998765555444 57
Q ss_pred CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEe--cCCeEEEEECCCcccccccccccccccCC
Q 012535 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (461)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (461)
+.|.+++++... ...+ ..........++++|.+ ..|+.+. ..+.|...++..... ..+....
T Consensus 101 ~~I~~~~~dG~~-~~~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~-- 164 (318)
T 3sov_A 101 NRIEVSNLDGSL-RKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSR-----FIIINSE-- 164 (318)
T ss_dssp TEEEEEETTSCS-CEEE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSC-----EEEECSS--
T ss_pred CEEEEEECCCCc-EEEE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCe-----EEEEECC--
Confidence 899999987432 2221 11234557899999976 4555444 357888888764321 1111110
Q ss_pred CccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEee-ccCccccccccccCCCccceeeEEEec
Q 012535 332 GTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 332 ~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
....+.+++++++..|+.++ .+.|..+|+. +.....+.. .... -..+++.
T Consensus 165 ---------l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~---------------P~glav~- 217 (318)
T 3sov_A 165 ---------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH---------------PFALTLF- 217 (318)
T ss_dssp ---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSC---------------EEEEEEE-
T ss_pred ---------CCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCC---------------ceEEEEe-
Confidence 13468999999888777765 3899999986 333333321 1111 1367775
Q ss_pred CCCEEEEecCCCeEEEEecCCCCcccee
Q 012535 409 DGGRVATGSYSNLFRVFGCSEGSAESTT 436 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 436 (461)
.+.++.+-...+.|..++..+++.....
T Consensus 218 ~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 218 EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 3455566667789999999877655333
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.94 E-value=0.012 Score=54.26 Aligned_cols=256 Identities=8% Similarity=0.002 Sum_probs=129.2
Q ss_pred cceEEEEEcCC--CCEEEEeecCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 36 DIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 36 ~~V~~~~~s~~--g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
.....|+|+|+ +..|..+...+.|+.++..++... .+.... .
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~------------------------~~~~~~------------~ 182 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD------------------------IKTTNI------------G 182 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE------------------------EECCCC------------S
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE------------------------EeecCC------------C
Confidence 34578999995 445655555588999998665421 122111 3
Q ss_pred ceEEEEEeecCCCcEEEEEeCC---Ce-EEEEEccCCcee-EEeeeecCCCccCCCCCccccccccCcceeec-CCCccc
Q 012535 114 KINKIRWCQSANSALYLLSTND---KT-IKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGE 187 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d---~~-i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~g~~~~ 187 (461)
....|+++ +++.++++-... .. +...+...+... .... ....|..++++| +|..
T Consensus 183 ~P~giavd--~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~----------------~~~~P~giavd~~~G~l-- 242 (433)
T 4hw6_A 183 QCADVNFT--LNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC----------------NARGAKTCAVHPQNGKI-- 242 (433)
T ss_dssp CEEEEEEC--TTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE----------------ECSSBCCCEECTTTCCE--
T ss_pred CccEEEEC--CCCCEEEEcCCCCcccceEEEEECCCCeecccccc----------------ccCCCCEEEEeCCCCeE--
Confidence 47899998 556644443311 12 222222221110 0100 011223778888 5554
Q ss_pred ccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCC
Q 012535 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (461)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~ 265 (461)
+++-..++.|+.++ . +...... ..+..+.......++|+|+++.|..+ ..+.|+.++.....
T Consensus 243 ----------yv~d~~~~~V~~~d-~---~~g~~~~--~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~ 306 (433)
T 4hw6_A 243 ----------YYTRYHHAMISSYD-P---ATGTLTE--EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET 306 (433)
T ss_dssp ----------EECBTTCSEEEEEC-T---TTCCEEE--EEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT
T ss_pred ----------EEEECCCCEEEEEE-C---CCCeEEE--EEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC
Confidence 24555667788777 2 2111100 11111222233469999999966555 58899998876321
Q ss_pred Cc----eeeecc-CCCCC------CCCCcceEEEEE---------eCCCCCeEEEEecCCeEEEEECCCccccccccccc
Q 012535 266 QS----FNIVDV-KPANM------EDLTEVITSAEF---------HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (461)
Q Consensus 266 ~~----~~~~~~-~~~~~------~~~~~~v~~v~~---------~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (461)
.. ..+... ....+ ...-.....+++ .+++ .++++-...+.|+.++. .+. +.++
T Consensus 307 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~-----v~t~ 379 (433)
T 4hw6_A 307 GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGR-----VTTY 379 (433)
T ss_dssp CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSE-----EEEE
T ss_pred cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCC-----EEEE
Confidence 11 111100 00000 001234677899 6666 66666667789999985 343 2222
Q ss_pred ccccC---CCccc---cccccccceeEEEEc-cCCCEEEEec-CCeEEEEEcc
Q 012535 326 EEQEA---PGTRS---FFTEIIASISDIKFA-RNGRHILSRD-YMTLKLWDIN 370 (461)
Q Consensus 326 ~~~~~---~~~~~---~~~~h~~~v~~l~~s-~~g~~l~s~~-d~~i~vwd~~ 370 (461)
-+... .+... .....-.....|+++ ++|.++++=. .+.|+.++++
T Consensus 380 ~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 380 AGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22110 00000 000011347889999 5665555533 3788888764
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.94 E-value=0.003 Score=55.38 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=109.6
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (461)
.++|+++|... ++...++.|..+| .+... .... .....+..++++++++++++. ...
T Consensus 36 gia~~~~g~ly------------v~d~~~~~I~~~d----~~g~~----~~~~--~~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 36 NLASAPDGTIF------------VTNHEVGEIVSIT----PDGNQ----QIHA--TVEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEEECTTSCEE------------EEETTTTEEEEEC----TTCCE----EEEE--ECSSEEEEEEECTTSCEEEEEECTT
T ss_pred eEEECCCCCEE------------EEeCCCCeEEEEC----CCCce----EEEE--eCCCCceeEEEcCCCcEEEEeccCC
Confidence 67888888752 5555778888777 22211 1111 112467899999999977765 332
Q ss_pred --eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 255 --RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 255 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
.|..+|..+++ ...+... . .......++..+.+ ..+++-..++.|..+|...+... +......-..
T Consensus 94 ~~~v~~~d~~~g~-~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~---v~~~~~~~~~- 161 (306)
T 2p4o_A 94 SIPVVSLVKSDGT-VETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGS---IWLEHPMLAR- 161 (306)
T ss_dssp SCEEEEEECTTSC-EEEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEE---EEEECGGGSC-
T ss_pred cceEEEEcCCCCe-EEEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEe---EEEECCcccc-
Confidence 46666765443 2222111 1 11223455555554 45555546889999998754210 0000000000
Q ss_pred ccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCC--eeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
....+.....+.+ ++++++|+.++ .+.|..|++...+.. ...+.....+ ..+++++
T Consensus 162 --~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P----------------~gi~vd~ 221 (306)
T 2p4o_A 162 --SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI----------------DDFAFDV 221 (306)
T ss_dssp --SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC----------------SSEEEBT
T ss_pred --ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC----------------CCeEECC
Confidence 0000000234445 88888887765 389999998732221 1122111111 2799999
Q ss_pred CCCEEEEecCCCeEEEEecC
Q 012535 409 DGGRVATGSYSNLFRVFGCS 428 (461)
Q Consensus 409 ~~~~l~s~~~dg~i~iw~~~ 428 (461)
+|+++++....+.|.+++..
T Consensus 222 dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TCCEEEECBTTCCEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCC
Confidence 99988887778899999976
No 281
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.84 E-value=0.009 Score=57.46 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=23.8
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCeeEEeeccC
Q 012535 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (461)
Q Consensus 352 ~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 384 (461)
.+.+++.++ |+.++.||.++ ++.+-.++....
T Consensus 483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g 515 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG 515 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence 455666665 69999999997 888887765443
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.84 E-value=0.013 Score=51.44 Aligned_cols=209 Identities=9% Similarity=-0.004 Sum_probs=112.3
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccC----CceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
.....++|.+. ++..+.+-...+.|..+++.+ .......... ...|..+++.+.+..+
T Consensus 30 ~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~---------------~~~p~glavd~~~~~l-- 91 (316)
T 1ijq_A 30 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------------IQAPDGLAVDWIHSNI-- 91 (316)
T ss_dssp SSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSS---------------CSCCCEEEEETTTTEE--
T ss_pred CceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC---------------CCCcCEEEEeecCCeE--
Confidence 34789999842 244445556678999999876 2212211110 0112267777655443
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CC-CeEEEEEccCCC
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD-LRINLWNLEISN 265 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-~~i~iwd~~~~~ 265 (461)
+++-...+.|.+++ + +... ...+..........++++|.+..|..+ .. +.|...++.. .
T Consensus 92 ---------y~~d~~~~~I~~~~-~---~g~~----~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~ 153 (316)
T 1ijq_A 92 ---------YWTDSVLGTVSVAD-T---KGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V 153 (316)
T ss_dssp ---------EEEETTTTEEEEEE-T---TSSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred ---------EEEECCCCEEEEEe-C---CCCc----eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-C
Confidence 24445667888777 2 2211 111122233567899999866555544 33 7888888763 2
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
....+. ...-...+.++++|++.++.++-...+.|..+|+.... ...+.... +......
T Consensus 154 ~~~~~~-------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-----~~~~~~~~---------~~~~~P~ 212 (316)
T 1ijq_A 154 DIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----RKTILEDE---------KRLAHPF 212 (316)
T ss_dssp CEEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEEECT---------TTTSSEE
T ss_pred CeEEEE-------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-----eEEEeecC---------CccCCcE
Confidence 222211 11234678999999873444555567799999987532 12221100 0002356
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEe
Q 012535 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 380 (461)
++++. .+.++++-. .+.|..++..+ ++.+..+.
T Consensus 213 giav~-~~~ly~~d~~~~~V~~~~~~~-g~~~~~i~ 246 (316)
T 1ijq_A 213 SLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA 246 (316)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred EEEEE-CCEEEEEECCCCeEEEEeCCC-CcceEEEe
Confidence 67775 343333433 38899998764 55555443
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.76 E-value=0.004 Score=61.10 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCEEEEeec-CCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccce
Q 012535 37 IISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (461)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (461)
...++++..+|++++.|+. +..+.+||..+.+.. ....+... ..-
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~---------------------~~~~~~~~-------------R~~ 289 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI---------------------PGPDMQVA-------------RGY 289 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE---------------------ECCCCSSC-------------CSS
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCcee---------------------ECCCCCcc-------------ccc
Confidence 3445788899999999984 458999998765321 11111110 111
Q ss_pred EEEEEeecCCCcEEEEEe-CC-----CeEEEEEccCCceeEE
Q 012535 116 NKIRWCQSANSALYLLST-ND-----KTIKLWKVQEKKVKKV 151 (461)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~-~d-----~~i~vw~~~~~~~~~~ 151 (461)
.+++.. +++..++.|+ .+ ..+.+||..+++...+
T Consensus 290 ~s~~~~--~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 290 QSSATM--SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp CEEEEC--TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred cceEEe--cCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 233443 4677888887 44 5799999988775544
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.027 Score=52.27 Aligned_cols=276 Identities=9% Similarity=0.045 Sum_probs=139.9
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCccee-------ecCCCcc
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-------MANGGCG 186 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~g~~~ 186 (461)
....|+|.|..++.++++....+.|++.|++++.+..+...... ... .|..++| +++|..+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-----~~~-------~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-----PTN-------RIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-----SCS-------BEEEEEECCCBTTTBCTTCEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-----ccC-------CCcEEEEeecccccCCCCCEE
Confidence 35789998632244444445557788999888877665443110 001 1226788 8888854
Q ss_pred cccccCCCCCccccccCCC-----cEEeeeeecccC-cccc--c--eeeEeeecccccceeeEEeCCC-CCEEEEe-CCC
Q 012535 187 ERNFGCASNDSSFPPGGVS-----SLRLPVVVTSQE-TNLV--A--GCRRIYAHAHDYHINSISNNSD-GETFISA-DDL 254 (461)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~-----~i~i~~~~~~~~-~~~~--~--~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~ 254 (461)
+++...+ ...++- +.... .... . .....+ .....++++|+ +.++++- .++
T Consensus 208 ------------yvad~~~~~~~~~~~V~~-i~r~~~G~~~~~~~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g 269 (496)
T 3kya_A 208 ------------IVAIDYDGKGDESPSVYI-IKRNADGTFDDRSDIQLIAAY-----KQCNGATIHPINGELYFNSYEKG 269 (496)
T ss_dssp ------------EEEECCCTTGGGEEEEEE-EECCTTSCCSTTSCEEEEEEE-----SCCCCEEECTTTCCEEEEETTTT
T ss_pred ------------EEEeCCCCCcccCceEEE-EecCCCCceeecccceeeccC-----CCceEEEEcCCCCeEEEEECCCC
Confidence 4333332 222332 21111 1111 0 111111 34567889995 4445555 688
Q ss_pred eEEEEEcc-------CCCC------c----e-eeeccCCCCCCCCCcceEEEEEeCCCCCe-EEEEecCCeEEEEECCC-
Q 012535 255 RINLWNLE-------ISNQ------S----F-NIVDVKPANMEDLTEVITSAEFHPTHCNM-LAYSSSKGSIRLIDMRQ- 314 (461)
Q Consensus 255 ~i~iwd~~-------~~~~------~----~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~~-l~~~~~dg~i~iwd~~~- 314 (461)
.|..+|+. ++.. . . .+. .. +.....+.++|+|++ +. +++-.....|+.+|...
T Consensus 270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-----~~-~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-----TI-ADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-----EC-SSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEETT
T ss_pred EEEEEecccccccccCceeecccccccccccceeE-----ec-CCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecCCC
Confidence 99999987 3332 0 0 111 11 123456899999999 74 44445678888866533
Q ss_pred -cccccccccccccc-cCCCcc--cccccccccee-EEEEc-------cCCCEEEEec-CCeEEEEEccCCCCCeeEEee
Q 012535 315 -SALCDTHSKLFEEQ-EAPGTR--SFFTEIIASIS-DIKFA-------RNGRHILSRD-YMTLKLWDINMDSGPVATFQV 381 (461)
Q Consensus 315 -~~~~~~~~~~~~~~-~~~~~~--~~~~~h~~~v~-~l~~s-------~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~ 381 (461)
+.... ..++-+. ...+.. ......-.... .+... ++|.+.++=. ..+|+.++.. + .+.++-+
T Consensus 343 ~~~~~~--~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~--G-~v~TiaG 417 (496)
T 3kya_A 343 KKEFIT--PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE--G-IVSTYAG 417 (496)
T ss_dssp TTEECC--CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT--C-BEEEEEE
T ss_pred cceecc--cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC--C-CEEEEec
Confidence 22100 0111111 000000 00000112234 45554 4455554433 4899999832 4 5666665
Q ss_pred ccCcc--------ccccc-cccCCCccceeeEEEecC-CCEEEEecCCCeEEEEecCCCC
Q 012535 382 HEHLR--------PKLCD-LYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 382 ~~~~~--------~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
..... ..... .........-..++++++ +.++++=....+|+.++++...
T Consensus 418 ~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 418 RGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp SCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred ccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 42210 00000 011111222358999997 7777777778899999998653
No 285
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.72 E-value=0.02 Score=55.06 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccCCCCCeeEEeec
Q 012535 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (461)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 382 (461)
+|.|.-||+.+++..++. ... .++..-.....+.+++.|+ |+.++.||.++ ++.+-.++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~----~~~-------------~~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEH----KEH-------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEEEEE----EES-------------SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEECCCCCEEEEe----cCC-------------CCCcccceEeCCCEEEEECCCCcEEEEECCC-CCEEEEecCC
Confidence 578899999988764432 111 0111111112355666665 69999999996 8888888765
Q ss_pred cCccccccccccCCCccceeeEEEecCCCEEE
Q 012535 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (461)
..... .-+.+..+|+..+
T Consensus 527 ~g~~a--------------~P~~y~~~G~qYv 544 (582)
T 1flg_A 527 SGIVS--------------PPITWEQDGEQYL 544 (582)
T ss_dssp SCCCS--------------CCEEEEETTEEEE
T ss_pred CCccc--------------CceEEEECCEEEE
Confidence 44321 1366777887433
No 286
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.66 E-value=0.056 Score=56.26 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=27.6
Q ss_pred ccceEEEEEcCC------CCEEEEeec-CCcEEEEEcCCC
Q 012535 35 VDIISAIEFDKS------GDHLATGDR-GGRVVLFERTDT 67 (461)
Q Consensus 35 ~~~V~~~~~s~~------g~~l~tg~~-dg~i~iw~~~~~ 67 (461)
.+.|.|+++.|. ++++|+|.. |++|+|+++.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 467999999873 469999997 999999999753
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.039 Score=51.27 Aligned_cols=177 Identities=9% Similarity=0.017 Sum_probs=92.0
Q ss_pred cceeecCCCcccccccCCCCCccccccCCCcEEeeeeec-------ccCc-cc--cc---eeeEeeecccccceeeEEeC
Q 012535 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVT-------SQET-NL--VA---GCRRIYAHAHDYHINSISNN 242 (461)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-------~~~~-~~--~~---~~~~~~~~~~~~~v~~i~~~ 242 (461)
.++.+|++..+ +++-..++.|..+| +. .... .. .. .....+..+.......|+|+
T Consensus 251 giavdp~~g~L-----------Yvtd~~~g~V~r~d-~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~ 318 (496)
T 3kya_A 251 GATIHPINGEL-----------YFNSYEKGQVFRLD-LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH 318 (496)
T ss_dssp CEEECTTTCCE-----------EEEETTTTEEEEEC-HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC
T ss_pred EEEEcCCCCeE-----------EEEECCCCEEEEEe-cccccccccCceeecccccccccccceeEecCCCCCceEEEEc
Confidence 77888865554 35666778898888 43 1111 00 00 00111112333456789999
Q ss_pred CCCCEEEEe--CCCeEEEEEccCCCCce----eeecc-CCCCC------CCCCcceE-EEEEe-------CCCCCeEEEE
Q 012535 243 SDGETFISA--DDLRINLWNLEISNQSF----NIVDV-KPANM------EDLTEVIT-SAEFH-------PTHCNMLAYS 301 (461)
Q Consensus 243 ~~~~~l~~~--~d~~i~iwd~~~~~~~~----~~~~~-~~~~~------~~~~~~v~-~v~~~-------p~~~~~l~~~ 301 (461)
|+++.|..+ ....|+.++.......+ .+... ....+ ...-.... .++.. +++ .++++=
T Consensus 319 p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD 397 (496)
T 3kya_A 319 PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVD 397 (496)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEE
Confidence 999965555 58899987765322111 11100 00000 00112234 44554 455 666666
Q ss_pred ecCCeEEEEECCCcccccccccccccccCC---------Ccc---ccccccccceeEEEEccC-CCEEEEec-CCeEEEE
Q 012535 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAP---------GTR---SFFTEIIASISDIKFARN-GRHILSRD-YMTLKLW 367 (461)
Q Consensus 302 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~h~~~v~~l~~s~~-g~~l~s~~-d~~i~vw 367 (461)
..+..|+.++. .+. +.++-+.... +.. ......-.....|+++++ |.+.++=. ...|+.+
T Consensus 398 ~~N~rIr~i~~-~G~-----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 398 RLNFCVRKVTP-EGI-----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp GGGTEEEEECT-TCB-----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEeC-CCC-----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 77889999984 443 3333322100 000 000011245788999997 65555433 3899999
Q ss_pred EccC
Q 012535 368 DINM 371 (461)
Q Consensus 368 d~~~ 371 (461)
++..
T Consensus 472 ~~~~ 475 (496)
T 3kya_A 472 SMEQ 475 (496)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9874
No 288
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.64 E-value=0.008 Score=53.34 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=95.2
Q ss_pred ceeeEEeCCCCCEEEEe-------------CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeC--CCC-CeE
Q 012535 235 HINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NML 298 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~-~~l 298 (461)
...+++..|+|..++++ .+|.|.++|.++.......+.+....+.........+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45567778887777665 58999999987433222222111000222334566777765 342 244
Q ss_pred EEEec--CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec----C-----------
Q 012535 299 AYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y----------- 361 (461)
Q Consensus 299 ~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~----d----------- 361 (461)
++-.. +.+|.+|++........++.++.+.. ....+.+.+.++|++.++.. |
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-----------~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC-----------CCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 44343 56788887765432222334444322 14688999999999888753 1
Q ss_pred -CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEe-cCCCeEEEEecCC
Q 012535 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSE 429 (461)
Q Consensus 362 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~ 429 (461)
..=++|.+.. ++......+-..+ ..++|+||++.|+.+ +..+.|+.|++..
T Consensus 200 ~~~g~vyr~d~-~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 200 LAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CCCEEEEEECT-TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCccEEEEEEC-CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1234444442 3322222222221 289999999877655 4678999999974
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.58 E-value=0.064 Score=52.00 Aligned_cols=228 Identities=8% Similarity=-0.002 Sum_probs=132.6
Q ss_pred EEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcE
Q 012535 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (461)
Q Consensus 128 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 207 (461)
+|+.+ ....|+..++++........... ...+. .++|++.+..+ +++-..++.|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~-------~~~~~-------~l~~d~~~~~l-----------ywtD~~~~~I 61 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTG-------VKEAS-------ALDFDVTDNRI-----------YWTDISLKTI 61 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCS-------CSCEE-------EEEEETTTTEE-----------EEEETTTTEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCC-------CCceE-------EEEEECCCCEE-----------EEEECCCCeE
Confidence 44443 55678888887655333222110 01122 67888876654 3455566777
Q ss_pred EeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcce
Q 012535 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (461)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (461)
..++ +. .... ..........+..+++++.+..|..+ ..+.|.+.+++... ...+. ...-...
T Consensus 62 ~r~~-~~---g~~~----~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~-------~~~l~~P 125 (628)
T 4a0p_A 62 SRAF-MN---GSAL----EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLV-------WKDLDSP 125 (628)
T ss_dssp EEEE-TT---SCSC----EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEE-------CSSCCCE
T ss_pred EEEE-CC---CCCc----EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEE-------eCCCCCc
Confidence 7666 22 1111 11112222457789998876666555 57899999987433 22211 1233457
Q ss_pred EEEEEeCCCCCeEEEEe--cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--C
Q 012535 286 TSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y 361 (461)
Q Consensus 286 ~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d 361 (461)
..++++|.. ..|+... ..+.|...++..... ..+... ......|+++++++.|+.++ .
T Consensus 126 ~~iavdp~~-G~lY~tD~g~~~~I~r~~~dG~~~-----~~l~~~------------~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 126 RALALDPAE-GFMYWTEWGGKPKIDRAAMDGSER-----TTLVPN------------VGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EEEEEETTT-TEEEEEECSSSCEEEEEETTSCSC-----EEEECS------------CSSEEEEEEETTTTEEEEEETTT
T ss_pred ccEEEccCC-CeEEEeCCCCCCEEEEEeCCCCce-----EEEECC------------CCCcceEEEccccCEEEEEECCC
Confidence 899999965 4555444 256788888765432 111111 14578999999888888765 3
Q ss_pred CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 362 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+.|..+|+.. ... ..+...-... ..+++.. +.++++-...+.|...|..+++..
T Consensus 188 ~~I~~~d~dG-~~~-~v~~~~l~~P---------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 188 NLIESSNMLG-LNR-EVIADDLPHP---------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp TEEEEEETTS-CSC-EEEEECCSCE---------------EEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred CEEEEEcCCC-Cce-EEeeccCCCc---------------eEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 8999999863 222 3333221111 3677764 455556566889999998877655
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.56 E-value=0.038 Score=48.80 Aligned_cols=160 Identities=8% Similarity=0.047 Sum_probs=88.8
Q ss_pred ccccceeeEEeCCCCCEEEEeCCCeEEE-EEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEE
Q 012535 231 AHDYHINSISNNSDGETFISADDLRINL-WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (461)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 309 (461)
.....+..+++.+++.+++.+.++.+.. +|- +....+... ......+..+++.+++ .++ .++.+|.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~ 229 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAF 229 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEE
Confidence 3445678899999999888885555443 332 122222110 1234567889999987 554 5566888877
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 389 (461)
.+...+... ..+.....+ +...+.++.+.+++..++++.++.| ++..+ .++....+.......
T Consensus 230 s~~D~G~tW----~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~D-gG~tW~~~~~~~~~~--- 292 (327)
T 2xbg_A 230 SDPDNSENW----GELLSPLRR--------NSVGFLDLAYRTPNEVWLAGGAGAL-LCSQD-GGQTWQQDVDVKKVP--- 292 (327)
T ss_dssp EETTEEEEE----CCCBCTTSS--------CCSCEEEEEESSSSCEEEEESTTCE-EEESS-TTSSCEECGGGTTSS---
T ss_pred ecCCCCCee----EeccCCccc--------CCcceEEEEecCCCEEEEEeCCCeE-EEeCC-CCcccEEcCccCCCC---
Confidence 643323321 111111000 0134788999998888888888776 34443 244444333211100
Q ss_pred cccccCCCccceeeEEEecCCCEEEEecCCCeEEEEec
Q 012535 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (461)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 427 (461)
. .+.++.|.+++. ++.++.+|.|.-++-
T Consensus 293 ------~---~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 293 ------S---NFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp ------S---CCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ------C---CeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 0 113788876555 555667888776653
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.55 E-value=0.047 Score=49.75 Aligned_cols=208 Identities=9% Similarity=-0.009 Sum_probs=110.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc----eeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..+..|+|.+. ++.++.+-...+.|..+++.... ...+.... ...|..+++.+.+..+
T Consensus 112 ~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---------------~~~p~glavD~~~~~l-- 173 (400)
T 3p5b_L 112 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------------IQAPDGLAVDWIHSNI-- 173 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEECSS---------------CSCEEEEEEETTTTEE--
T ss_pred CcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---------------CCCcccEEEEecCCce--
Confidence 44789999853 34444444567888888886522 12221110 0112266777644433
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--C-CCeEEEEEccCCC
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISN 265 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~iwd~~~~~ 265 (461)
+++-...+.|.+.+ + +... ..............|+++|.+..|..+ . .+.|...+++...
T Consensus 174 ---------Y~~d~~~~~I~~~~-~---~g~~----~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 174 ---------YWTDSVLGTVSVAD-T---KGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp ---------EEEETTTTEEEEEC-T---TTCS----EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred ---------EEEECCCCeEEEEe-C---CCCc----eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 24445567777766 2 2211 111122233457899999976655554 2 4788888887432
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
...+. ...-...+.|+++|++.++.++-...+.|..+|+..... ..+..... ......
T Consensus 237 -~~~~~-------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~~---------~l~~P~ 294 (400)
T 3p5b_L 237 -IYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK---------RLAHPF 294 (400)
T ss_dssp -CEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-----EEEEECSS---------TTSSEE
T ss_pred -cEEEE-------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-----EEEEeCCC---------CCCCCE
Confidence 22221 122356789999998734444445578899999875432 22211100 002345
Q ss_pred EEEEccCCCEEEEe-cC-CeEEEEEccCCCCCeeEEe
Q 012535 346 DIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 346 ~l~~s~~g~~l~s~-~d-~~i~vwd~~~~~~~~~~~~ 380 (461)
++++. +..|+.. .. +.|..+|..+ ++.+..+.
T Consensus 295 gl~v~--~~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 328 (400)
T 3p5b_L 295 SLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLLA 328 (400)
T ss_dssp EEEEE--TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred EEEEe--CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence 66663 3344443 33 8888888654 55555443
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.53 E-value=0.04 Score=48.36 Aligned_cols=205 Identities=7% Similarity=0.005 Sum_probs=113.9
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee-EEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
+..++|.+. ++.++.+-...+.|..+++.++... .+..... ..|..+++.+.+..+
T Consensus 37 ~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l---------------~~p~glavd~~~g~l------- 93 (318)
T 3sov_A 37 AAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---------------LSPDGLACDWLGEKL------- 93 (318)
T ss_dssp EEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCCCEEEEECC---------------SCCCEEEEETTTTEE-------
T ss_pred cEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCceEEEEcCCC---------------CCccEEEEEcCCCeE-------
Confidence 678899853 3445555567788999998766321 1111110 112267777655443
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--C-CCeEEEEEccCCCCceee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNI 270 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~ 270 (461)
+++-...+.|.+++ + +.... ..+..........++++|.+..|..+ . .+.|...+++... ...+
T Consensus 94 ----y~~d~~~~~I~~~~-~---dG~~~----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~ 160 (318)
T 3sov_A 94 ----YWTDSETNRIEVSN-L---DGSLR----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFII 160 (318)
T ss_dssp ----EEEETTTTEEEEEE-T---TSCSC----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEE
T ss_pred ----EEEECCCCEEEEEE-C---CCCcE----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEE
Confidence 24445567787777 2 22111 11122334567899999875555544 2 5788888876322 2221
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
. ...-...+.++++|++.++.++-...+.|..+|+..... ..+.... .....++++.
T Consensus 161 ~-------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~-----------~~~P~glav~ 217 (318)
T 3sov_A 161 I-------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----QAVVKGS-----------LPHPFALTLF 217 (318)
T ss_dssp E-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSC-----------CSCEEEEEEE
T ss_pred E-------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-----EEEecCC-----------CCCceEEEEe
Confidence 1 112345689999997634555555678899999875331 2221100 1345667775
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCeeEEe
Q 012535 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 351 ~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 380 (461)
.+ .++.+-. .+.|..++..+ ++....+.
T Consensus 218 ~~-~lywtd~~~~~V~~~~~~~-G~~~~~i~ 246 (318)
T 3sov_A 218 ED-ILYWTDWSTHSILACNKYT-GEGLREIH 246 (318)
T ss_dssp TT-EEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred CC-EEEEEecCCCeEEEEECCC-CCceEEEe
Confidence 33 3333322 38899999864 55554443
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.50 E-value=0.098 Score=52.05 Aligned_cols=207 Identities=9% Similarity=0.001 Sum_probs=112.8
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCc----eeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccc
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 188 (461)
..+..|+|.+. ++.++++-...+.|+.+++.... ...+.... ...|..+++.+.++.|
T Consensus 424 ~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~---------------l~~P~GLAvD~~~~~L-- 485 (791)
T 3m0c_C 424 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------------IQAPDGLAVDWIHSNI-- 485 (791)
T ss_dssp SSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSS---------------CSCCCEEEEETTTTEE--
T ss_pred CceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecC---------------CCCcceeeeeecCCcE--
Confidence 34788999842 34445555667888888887532 11211111 1122367887776554
Q ss_pred cccCCCCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--C-CCeEEEEEccCCC
Q 012535 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISN 265 (461)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~iwd~~~~~ 265 (461)
+++-...+.|.+.+ + +... .+.+..........|+++|....|..+ . .+.|...++.. .
T Consensus 486 ---------Y~tD~~~~~I~v~~-l---dG~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~ 547 (791)
T 3m0c_C 486 ---------YWTDSVLGTVSVAD-T---KGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V 547 (791)
T ss_dssp ---------EEEETTTTEEEEEE-T---TSSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred ---------EEEecCCCeEEEEe-C---CCCe----EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-C
Confidence 35556667888777 2 2211 122223333568899999985555554 3 37888888873 3
Q ss_pred CceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCcccccccccccee
Q 012535 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 345 (461)
....++ ...-...+.|++++.+.+++++-...+.|..+|+..... ..+..... ......
T Consensus 548 ~~~~lv-------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-----~~v~~~~~---------~l~~P~ 606 (791)
T 3m0c_C 548 DIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK---------RLAHPF 606 (791)
T ss_dssp CEEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECTT---------TTSSEE
T ss_pred ceEEEE-------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-----EEEecCCC---------ccCCCC
Confidence 222221 123356889999987734444444567899999865432 22211100 002234
Q ss_pred EEEEccCCCEEEEec-C-CeEEEEEccCCCCCeeEE
Q 012535 346 DIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATF 379 (461)
Q Consensus 346 ~l~~s~~g~~l~s~~-d-~~i~vwd~~~~~~~~~~~ 379 (461)
+|++. +.+|+.++ . +.|...|..+ ++.+..+
T Consensus 607 glav~--~~~lYwtD~~~~~I~~~dk~t-G~~~~~l 639 (791)
T 3m0c_C 607 SLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLL 639 (791)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEE
T ss_pred EEEEe--CCEEEEEECCCCEEEEEeCCC-CcceEEe
Confidence 56653 34666554 3 7888888664 5444444
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.46 E-value=0.039 Score=47.97 Aligned_cols=180 Identities=11% Similarity=0.081 Sum_probs=103.1
Q ss_pred cccccceeeEEeCCCCCEE-EEe-CCCeEEEEEccCCCCceeeeccCCCCCC--C-CCcceEEEEE---eCCCCCeEEEE
Q 012535 230 HAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANME--D-LTEVITSAEF---HPTHCNMLAYS 301 (461)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~-~~~~v~~v~~---~p~~~~~l~~~ 301 (461)
.....-..+++|++....| ++. ..++|..||...+ ....+ .+. .+. + ....+..+.| .|++ +++++.
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~-~~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~ 83 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ-SHFNV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVM 83 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTC-CEEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEE
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC-eEEEE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEE
Confidence 3444556688998754454 455 6999999998733 22222 111 111 1 1224579999 6887 777764
Q ss_pred ec-------------CCeEEEEECC---CcccccccccccccccCCCccccccc-cccceeEEEEccCCCEEEEec-C-C
Q 012535 302 SS-------------KGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRD-Y-M 362 (461)
Q Consensus 302 ~~-------------dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~g~~l~s~~-d-~ 362 (461)
.. +..|..||+. +++.... ..+...... .....+ -......++..++|+..++++ - +
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~--~dL~~~~~~--~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS--VNFEKVQDE--FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE--EESHHHHHH--HHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEE--ecCcccccc--ccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence 42 6789999998 6654211 111110000 000000 003488999999999888765 3 5
Q ss_pred eEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCC
Q 012535 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 363 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
.|...+. +++.+..+........ .......++++|+|+.|++....|.|.-+|+..
T Consensus 160 ~I~rV~p--dG~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSA--DGKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECT--TSCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eEEEEeC--CCCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 5554444 3554444432221100 001123899999999888877799999999883
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.44 E-value=0.0025 Score=62.79 Aligned_cols=208 Identities=10% Similarity=-0.021 Sum_probs=111.3
Q ss_pred cceEEEEEcCCCCEEEEee-cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhccccccccc
Q 012535 36 DIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (461)
..+..|+|++.+..|+.+. ..+.|+.+++.+...... ....+.... ..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-------------------~~~~i~~~~------------~~ 454 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------------YDTVISRDI------------QA 454 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-------------------CCCBCCSCC--------------
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-------------------eEEEEeCCC------------CC
Confidence 4466889998776666654 457888888765110000 000111000 12
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCC
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (461)
...|++.+. .+.++++-...+.|.+.++.......+..... ..|..+++.|.+..+
T Consensus 455 P~glavD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~---------------~~P~giavDp~~g~l-------- 510 (699)
T 1n7d_A 455 PDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---------------SKPRAIVVDPVHGFM-------- 510 (699)
T ss_dssp CCCEECCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSS---------------CCCCCEECCSSSSCC--------
T ss_pred cceEEEEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCC---------------CCcceEEEccCCCcE--------
Confidence 455666532 24445554667889999887665443322111 112267888866654
Q ss_pred CCccccccC-CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeee
Q 012535 195 NDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 271 (461)
Q Consensus 195 ~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~ 271 (461)
+++-.. .+.|..++ + +.... ..+....-...+.|+|+|++..|..+ ..+.|..+++.... ...++
T Consensus 511 ---y~td~~~~~~I~~~~-~---dG~~~----~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~ 578 (699)
T 1n7d_A 511 ---YWTDWGTPAKIKKGG-L---NGVDI----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL 578 (699)
T ss_dssp ---EECCCSSSCCEEBCC-S---SSCCC----CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEEC
T ss_pred ---EEcccCCCCeEEEEe-C---CCCCe----eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEE
Confidence 122222 25676655 2 21111 11111223456789999986666655 57899999987432 22221
Q ss_pred ccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 272 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
...........|++..+ .++++....+.|..+|..+++.
T Consensus 579 -----~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 579 -----EDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp -----CCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred -----ecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence 11111223445666553 4666667778999999877664
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.40 E-value=0.062 Score=47.42 Aligned_cols=118 Identities=7% Similarity=0.094 Sum_probs=67.6
Q ss_pred cccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
....+..+++.+++..++.+.+|.+++.+.+ .......+.. ..+ .....+.++++.+++ .+++++ .+|.| ++.
T Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~G~tW~~~~~--~~~-~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S 275 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-NSENWGELLS--PLR-RNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCS 275 (327)
T ss_dssp SSSCEEEEEECTTSCEEEEETTTEEEEEETT-EEEEECCCBC--TTS-SCCSCEEEEEESSSS-CEEEEE-STTCE-EEE
T ss_pred CCCccceeEECCCCCEEEEeCCceEEEecCC-CCCeeEeccC--Ccc-cCCcceEEEEecCCC-EEEEEe-CCCeE-EEe
Confidence 3456788889999988877778888776422 1112111000 001 122357899999876 555554 56766 344
Q ss_pred CCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEc
Q 012535 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (461)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~ 369 (461)
...++.- ..+..... +...+.++.|.++++++++|.+|.|.-++-
T Consensus 276 ~DgG~tW-~~~~~~~~------------~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 276 QDGGQTW-QQDVDVKK------------VPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp SSTTSSC-EECGGGTT------------SSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCCccc-EEcCccCC------------CCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 4444321 11111100 014578888887777777788888776654
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.32 E-value=0.069 Score=46.39 Aligned_cols=105 Identities=10% Similarity=0.115 Sum_probs=65.7
Q ss_pred CCeEEEEEcc---CCCCceeeeccCCCCCCC-------CCcceEEEEEeCCCCCeEEEEecC-CeEEEEECCCccccccc
Q 012535 253 DLRINLWNLE---ISNQSFNIVDVKPANMED-------LTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTH 321 (461)
Q Consensus 253 d~~i~iwd~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 321 (461)
+..|..+|+. +++....+ ++.. ...+ .......++..++| +..++++.. +.|..++......
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~-dL~~-~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~~---- 171 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSV-NFEK-VQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKTV---- 171 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEE-ESHH-HHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCCE----
T ss_pred CCEEEEEcCCcCCCCCEEEEe-cCcc-ccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCEE----
Confidence 5778889988 55544332 1100 0000 12347899999999 888888888 8888777765422
Q ss_pred ccccccccCCCccccccccccceeEEEEccCCCEEEEec-CCeEEEEEccC
Q 012535 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (461)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d~~i~vwd~~~ 371 (461)
..+...... .......+.++++|+|..|++.. .+.+..+|+..
T Consensus 172 -~~~~~~~~~------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 -STFAWESGN------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -EEEEECCCC------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -eeeeecCCC------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 111111000 00013478999999999888865 59999999874
No 298
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.26 E-value=0.051 Score=48.82 Aligned_cols=165 Identities=12% Similarity=0.136 Sum_probs=98.3
Q ss_pred EeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCC--CCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCccc
Q 012535 240 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (461)
Q Consensus 240 ~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (461)
....++..++.+.++.||.-++.... .++... .+. .-..|..+..+|+| .+||.. .+..|.|-.+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L~-----~~~~i~f~~i~qlvlSpsG-~lLAl~-g~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDS-LYHSLN-----FSRHLVLDDTFHVISSTSG-DLLCLF-NDNEIFVMEVPWGYS 98 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCS-SCEEEE-----CTTTCCCCTTCEEEECTTS-SEEEEE-CSSEEEEEECCTTCS
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCC-cceEEe-----cCcccccCceeEEEECCCC-CEEEEe-cCCeEEEEEecCccc
Confidence 34567778888877999988887433 444332 221 12357889999999 888876 456789988874321
Q ss_pred cccc--------ccccccccCCCccccccccccceeEEEEccC---CCEEEE-ecCCeEEEEEccCC-CCCeeEEeeccC
Q 012535 318 CDTH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS-RDYMTLKLWDINMD-SGPVATFQVHEH 384 (461)
Q Consensus 318 ~~~~--------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---g~~l~s-~~d~~i~vwd~~~~-~~~~~~~~~~~~ 384 (461)
.... .+.+..... ......+|..+.|+|- +..|++ -+|+.|++||+... .++. .+.....
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred cCcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 1100 011111100 0012367999999993 445555 67899999999852 2333 4432111
Q ss_pred ccccccccccCCCccceeeEEEecCCCEEEE--ecCCCeEEEE
Q 012535 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFRVF 425 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iw 425 (461)
.+.......+|.+++|..++-.|.. .+..|.|+-.
T Consensus 172 ------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 ------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1111233356679999998776665 4477877654
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.19 E-value=0.16 Score=49.10 Aligned_cols=158 Identities=12% Similarity=0.037 Sum_probs=95.0
Q ss_pred cceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec--CCeEEE
Q 012535 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRL 309 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~i 309 (461)
..+..+++++.+..|..+ ..+.|.+.+++... ...+. ...-.....|+++|.+ ..|+.... .+.|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~-------~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLF-------WQELDQPRAIALDPSS-GFMYWTDWGEVPKIER 154 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-------CSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEE-------eCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence 567899999976666655 58999999987432 22221 1233457899999976 44444442 467777
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCeeEEee-ccCcc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQV-HEHLR 386 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~~~~~~-~~~~~ 386 (461)
.++..... ..+.... ......|++++++..|+.++ .+.|...|+. +.....+.. .....
T Consensus 155 ~~~dG~~~-----~~l~~~~-----------~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~P 216 (619)
T 3s94_A 155 AGMDGSSR-----FIIINSE-----------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPHP 216 (619)
T ss_dssp EETTSCSC-----EEEECSS-----------CSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC---------C
T ss_pred EECCCCce-----EEEEeCC-----------CCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCCc
Confidence 77764321 1111111 14578999999877777765 3788888886 332222211 10000
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCccc
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 434 (461)
..+++..+ .++.+-...+.|...|..+++...
T Consensus 217 ---------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 217 ---------------FALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp ---------------CCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred ---------------eEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 26777655 455555567889999998886543
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.17 E-value=0.055 Score=47.98 Aligned_cols=174 Identities=8% Similarity=0.100 Sum_probs=94.0
Q ss_pred CCCcEEeeeeecccCccccceeeEee---ecccccceeeEEeCC--CCC--EEEEe-C--CCeEEEEEccCCCCceeeec
Q 012535 203 GVSSLRLPVVVTSQETNLVAGCRRIY---AHAHDYHINSISNNS--DGE--TFISA-D--DLRINLWNLEISNQSFNIVD 272 (461)
Q Consensus 203 ~~~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~--~~~--~l~~~-~--d~~i~iwd~~~~~~~~~~~~ 272 (461)
.+|.|.++| ....... ....... ..........+.+.+ ++. ++++- . +.+|.+|+++........+.
T Consensus 81 ~~G~I~~~d-~~~~~~~--~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 81 KSGKILLMD-LNEKEPA--VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp -CCEEEEEE-TTSSSCC--EEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEe-cCCCCCc--eEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence 688899988 4321111 1111110 011334667777655 343 44443 3 67889998875444333221
Q ss_pred cCCCCCCC-CCcceEEEEEeCCCCCeEEEEec-----------------CCeEEEEECCCcccccccccccccccCCCcc
Q 012535 273 VKPANMED-LTEVITSAEFHPTHCNMLAYSSS-----------------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (461)
Q Consensus 273 ~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (461)
++.+ .-...+.+++.++| .+.++... .|.|..+|. ++ +..+..
T Consensus 158 ----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-----~~~~~~------- 218 (355)
T 3sre_A 158 ----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-----VRVVAE------- 218 (355)
T ss_dssp ----EECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-----CEEEEE-------
T ss_pred ----ccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-----EEEeec-------
Confidence 1222 23457899999998 66665431 234444443 22 111111
Q ss_pred ccccccccceeEEEEccCCCEEEEec--CCeEEEEEccCCCCCe--eEEeeccCccccccccccCCCccceeeEEEec-C
Q 012535 335 SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-D 409 (461)
Q Consensus 335 ~~~~~h~~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~ 409 (461)
....-+.++|+||++.|+.++ .+.|+.|++...+... ..+.. .+.. -.++..+ +
T Consensus 219 -----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-~g~P---------------DGi~vD~e~ 277 (355)
T 3sre_A 219 -----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DTLV---------------DNISVDPVT 277 (355)
T ss_dssp -----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSEE---------------EEEEECTTT
T ss_pred -----CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-CCCC---------------ceEEEeCCC
Confidence 113578999999999888865 3899999997433321 12211 1111 1688888 5
Q ss_pred CCEEEEecCC
Q 012535 410 GGRVATGSYS 419 (461)
Q Consensus 410 ~~~l~s~~~d 419 (461)
|++.+++..+
T Consensus 278 G~lwva~~~~ 287 (355)
T 3sre_A 278 GDLWVGCHPN 287 (355)
T ss_dssp CCEEEEEESC
T ss_pred CcEEEEecCC
Confidence 8887766533
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.97 E-value=0.3 Score=47.29 Aligned_cols=195 Identities=7% Similarity=0.009 Sum_probs=111.9
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
.+..|+|.+. ++..+.+-..++.|..+++.......+..... ..|..+++.+.+..+
T Consensus 38 ~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~---------------~~P~GlAvD~~~~~L------- 94 (628)
T 4a0p_A 38 EASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHVVEFGL---------------DYPEGMAVDWLGKNL------- 94 (628)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCEEEEETTTTEE-------
T ss_pred ceEEEEEECC-CCEEEEEECCCCeEEEEECCCCCcEEEEeCCC---------------CCcceEEEEeCCCEE-------
Confidence 3789999953 34445555678899999987665443332210 112267777665543
Q ss_pred CCCccccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--C-CCeEEEEEccCCCCceee
Q 012535 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNI 270 (461)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~ 270 (461)
+++-...+.|.+.+ + +.... ..+....-.....|+++|....|..+ . .+.|...++.... ...+
T Consensus 95 ----Y~tD~~~~~I~v~~-~---dG~~~----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l 161 (628)
T 4a0p_A 95 ----YWADTGTNRIEVSK-L---DGQHR----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL 161 (628)
T ss_dssp ----EEEETTTTEEEEEE-T---TSTTC----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE
T ss_pred ----EEEECCCCEEEEEe-c---CCCcE----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE
Confidence 34445567777766 2 22111 11122333567899999865455444 2 6788888877433 2222
Q ss_pred eccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 271 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
. ..-.....+++++++.++.++-...+.|..+|+..... ..+...- ....++++.
T Consensus 162 ~--------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-----~v~~~~l------------~~P~glav~ 216 (628)
T 4a0p_A 162 V--------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-----EVIADDL------------PHPFGLTQY 216 (628)
T ss_dssp E--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECC------------SCEEEEEEE
T ss_pred E--------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-----EEeeccC------------CCceEEEEE
Confidence 1 13456789999998734445555678899999876432 1111110 234567775
Q ss_pred cCCCEEEEec--CCeEEEEEccC
Q 012535 351 RNGRHILSRD--YMTLKLWDINM 371 (461)
Q Consensus 351 ~~g~~l~s~~--d~~i~vwd~~~ 371 (461)
. ..|+.++ .+.|...|..+
T Consensus 217 ~--~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 217 Q--DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp T--TEEEEEETTTTEEEEEETTT
T ss_pred C--CEEEEecCCCCEEEEEECCC
Confidence 4 3455443 38888888654
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.92 E-value=0.21 Score=44.55 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=19.1
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 012535 115 INKIRWCQSANSALYLLSTNDKTIKLWK 142 (461)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vw~ 142 (461)
-..|+|. ++|+ ++++..++.|.+++
T Consensus 33 P~~ia~~--pdG~-l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 33 PWALAFL--PDGG-MLIAERPGRIRLFR 57 (352)
T ss_dssp EEEEEEC--TTSC-EEEEETTTEEEEEE
T ss_pred ceEEEEc--CCCe-EEEEeCCCeEEEEE
Confidence 6789998 5566 55566679999988
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.78 E-value=0.14 Score=44.21 Aligned_cols=148 Identities=10% Similarity=0.169 Sum_probs=99.9
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
+.+|.+.|+.......+ ..-..-+.-.+|.. +.+|.-. ..++.++|+.+.+. +..+...
T Consensus 48 ~~~VvIiDl~n~~~~~R-----------rpi~AdsAIMnP~~-~ViALra-g~~LQiFnletK~k----lks~~~~---- 106 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSK----MKAHTMT---- 106 (365)
T ss_dssp EEEEEEEETTSTTSCEE-----------EECCCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEE----EEEEECS----
T ss_pred CCEEEEEECCCCCCccc-----------cccccceeeeCCCc-cEEEEec-CCeEEEechHHhhh----hcceecC----
Confidence 34677888876554432 11222355678987 7777654 78999999998765 3333332
Q ss_pred ccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
..|.--.|-. .+.|+--.+..|+-|++.....+.+.+..|..... .-|..-..+++.++
T Consensus 107 ---------e~VvfWkWis-~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~-----------~QIInY~~d~~~kW 165 (365)
T 2xzh_A 107 ---------DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQKW 165 (365)
T ss_dssp ---------SCEEEEEECS-SSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTT-----------CEEEEEEECTTSCE
T ss_pred ---------CccEEEEecC-CCeEEEEcCCcEEEEcccCCCCCceeeecchhccc-----------ceEEEEEECCCCCE
Confidence 3577777764 45676667779999999866789999998876532 12346677888888
Q ss_pred EEEec-------CCCeEEEEecCCCCccceeeccCCCCC
Q 012535 413 VATGS-------YSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 413 l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
++..+ -.|.+.+|..+.+ ..+.+++|....
T Consensus 166 ~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F 202 (365)
T 2xzh_A 166 LLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASF 202 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEE
T ss_pred EEEEeEeccCCccceeEEEEeeccc--ccceeeeeeeee
Confidence 76544 2478899999854 556777775544
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.72 E-value=0.27 Score=43.13 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=66.0
Q ss_pred cccccCCCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe-CCCeEEEEEccCCC-CceeeeccCC
Q 012535 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKP 275 (461)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~ 275 (461)
+++...+|.+..|++..........+..+.+..+ ..+..+...+....|..+ ++.-|..++.+... ....++..-
T Consensus 146 afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~- 222 (355)
T 3amr_A 146 AMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA- 222 (355)
T ss_dssp EEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-
T ss_pred EEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-
Confidence 4788888999999933323333445555665333 567788899888888888 66656666644221 011111100
Q ss_pred CCCCCCCcceEEEEE--eCCCCCeEEEEe-cCCeEEEEECC
Q 012535 276 ANMEDLTEVITSAEF--HPTHCNMLAYSS-SKGSIRLIDMR 313 (461)
Q Consensus 276 ~~~~~~~~~v~~v~~--~p~~~~~l~~~~-~dg~i~iwd~~ 313 (461)
........+..|++ .+++..+|++++ .+.+..+||..
T Consensus 223 -~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 -DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 11222345777777 455522444444 67899999986
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.71 E-value=0.08 Score=47.25 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=60.9
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC---CCCeEEEEec---C---
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K--- 304 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~---d--- 304 (461)
.....++|.|+++++++-.++.|++++.. +. ..+..+. ...........|+++|+ +..+.++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45678999999987776666999999743 32 2221111 11122356789999997 4144443332 3
Q ss_pred -CeEEEEECCCcc--ccc-ccc-cccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 305 -GSIRLIDMRQSA--LCD-THS-KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 305 -g~i~iwd~~~~~--~~~-~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
..|..|+..... ... +.+ ..+... ..| ....++|.|||.+.++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~---------~~h--~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGA---------YIH--NGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECC---------SSC--CCCCEEECTTSCEEEE
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCC---------CCc--CCceEEECCCCcEEEE
Confidence 567777765431 100 000 111100 012 2467999999987777
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.71 E-value=0.48 Score=45.80 Aligned_cols=202 Identities=12% Similarity=0.014 Sum_probs=110.5
Q ss_pred ccceEEEEEcCCCCEEEEee-cCCcEEEEEcCCCCCCCCcccccccccccccCCccccccccccCCCcchhhcccccccc
Q 012535 35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (461)
......|+|++.+..|+.+. ..+.|..++..+.... ...+...- .
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~ 84 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L 84 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence 45578999999777666655 4577888887654210 01111111 2
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCC
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (461)
....|++.+. ++.++++-...+.|.+.+++......+..... ..|..+++.|.+..+
T Consensus 85 ~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~Iavdp~~g~l------- 141 (619)
T 3s94_A 85 SPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------------DQPRAIALDPSSGFM------- 141 (619)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCCEEEETTTTEE-------
T ss_pred CcCeEEEEec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------------CCCceEEEecCCCeE-------
Confidence 3678888742 34455555678999999988765433332111 122378888875553
Q ss_pred CCCccccccC--CCcEEeeeeecccCccccceeeEeeecccccceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCcee
Q 012535 194 SNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (461)
Q Consensus 194 ~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 269 (461)
+.... .+.|...+ .+.... ..+....-...+.|++++++..|..+ ..+.|...|+.... ...
T Consensus 142 -----y~tD~g~~~~I~r~~----~dG~~~----~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~ 207 (619)
T 3s94_A 142 -----YWTDWGEVPKIERAG----MDGSSR----FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQA 207 (619)
T ss_dssp -----EEEECSSSCEEEEEE----TTSCSC----EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC-
T ss_pred -----EEeccCCCCEEEEEE----CCCCce----EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEE
Confidence 33322 34444433 222111 11112233567899999987777766 57888888887322 211
Q ss_pred eeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcc
Q 012535 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (461)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (461)
+ ..+.......+++..+ .++.+-..++.|...|..+++
T Consensus 208 ~-------~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 208 V-------VKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp ---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred E-------EeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 1 1111223356677654 455555667889999987764
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.69 E-value=0.31 Score=43.40 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=22.9
Q ss_pred cceEEEEEcCCCCEEEEeecCCcEEEEEcC
Q 012535 36 DIISAIEFDKSGDHLATGDRGGRVVLFERT 65 (461)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~ 65 (461)
..-+.|+|.|+|+.|+++...|.|++++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 346899999999834455678999999853
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.66 E-value=0.068 Score=47.69 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=61.8
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC---CCCeEEEEecC-----C
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----G 305 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~d-----g 305 (461)
.....++|.|+|+++++-.++.|.+++ . +. ...+..+. ...........++++|+ +..+.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 456789999999977776669999998 3 22 11111111 11223456789999998 41444443332 6
Q ss_pred eEEEEECCCcccccc--cccccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 306 SIRLIDMRQSALCDT--HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 306 ~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
.|..|+......... .+..+.... -..| ....++|.|||.+.++
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~-------~~~h--~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARP-------HGLH--SGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCT-------TCCC--CCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCC-------CCCc--CCceEEECCCCCEEEE
Confidence 787888764321100 011111000 0112 2368999999977776
No 309
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.55 E-value=0.2 Score=40.58 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=64.7
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCC--CCCCcceEEEEEeCCCCCeEEEEecCCeEEEEE
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd 311 (461)
..+..++|+|++.+.++ .+|.+.-.+..+.... ..+.. ...+ .+-.. ..++.|.|+| .+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-NWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcc-ccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence 36779999999998777 7787666665432111 00000 0000 01111 4789999998 55555 779888777
Q ss_pred CCCcccccccccc--cccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEE
Q 012535 312 MRQSALCDTHSKL--FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 366 (461)
Q Consensus 312 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~v 366 (461)
-.+... ...+.. .-+... -..+..|.|.|+|.+-+.. ++.++-
T Consensus 114 pP~~~~-~~Wl~~a~~vg~~g----------w~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 114 PPQSDT-DNWIARATEVGSGG----------WSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CCCSTT-CCHHHHSEEEECSS----------GGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred CCcCCC-CceeccccEeccCC----------CCceEEEEECCCceEEEEe-CCcEEe
Confidence 533211 000111 000000 0358999999999988888 877543
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.54 E-value=0.38 Score=42.47 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=25.4
Q ss_pred ccceEEEEEcCCCCEEEEeecCCcEEEEEcCCC
Q 012535 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (461)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~ 67 (461)
-..-+.|+|.|||+++++--..|.|++++..++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 345689999999987777655899999875543
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.49 E-value=0.2 Score=44.16 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=62.7
Q ss_pred cceeeEEeCCCCCEEEEe-CCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC---CCCeEEEE---ecCCe
Q 012535 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYS---SSKGS 306 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~---~~dg~ 306 (461)
.....|+|.|+|.++++- ..|.|++++...+.. ..+..+ +............|+++|+ + ..|+.. ..++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~-~~v~~~g~~GllGia~~Pdf~~~-g~lYv~yt~~~~~~ 108 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEV-PGVSPSGEGGLLGIALSPDYASD-HMVYAYFTSASDNR 108 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEEC-TTCCCBTTBSEEEEEECTTHHHH-CEEEEEEECSSSEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeeccc-CceeecCCCCceeeEeccccccC-CEEEEEEecCCCCE
Confidence 467799999999988888 599999998653322 111111 1112234566789999995 3 344432 23455
Q ss_pred EEEEECCCcc----cccccccccccccCCCccccccccccceeEEEEccCCCEEEE
Q 012535 307 IRLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (461)
Q Consensus 307 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s 358 (461)
|.-|.+.... ........+..-. .-..| .-..|.|.|||.+.++
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p------~~~~H--~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIP------KGVIH--NGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEEC------CCSSC--CCCCEEECTTSCEEEE
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCC------CCCCc--cCccccCCCCCCEEEE
Confidence 6556655421 0000000111000 00122 3467999999987777
No 312
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.44 E-value=0.43 Score=41.91 Aligned_cols=149 Identities=7% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCeEEEEEccCCCCceeee-ccCCCCCCCCCcceEEEEE--eCCCCC-eEEEEecCCeEEEEECC---Cccccccccccc
Q 012535 253 DLRINLWNLEISNQSFNIV-DVKPANMEDLTEVITSAEF--HPTHCN-MLAYSSSKGSIRLIDMR---QSALCDTHSKLF 325 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~--~p~~~~-~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~ 325 (461)
+++|.+|++.........+ .+.. .+......+..+++ +|.... ++++...+|.+..|++. .+....+.+++|
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~-pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDH-PIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTS-CEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeecccccc-CcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 6899999774222222211 0000 00011145667777 775423 67788889999999883 333333335666
Q ss_pred ccccCCCccccccccccceeEEEEccCCCEEEEecC-CeEEEEEccCCC----CCeeEEeeccCccccccccccCCCccc
Q 012535 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFD 400 (461)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d-~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (461)
... +.+..+...+....|+.+.. ..|..++.+... +.+..+. ..... .+
T Consensus 177 ~lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~------------aD 230 (355)
T 3amr_A 177 KMN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLT------------RD 230 (355)
T ss_dssp ECS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBC------------SC
T ss_pred cCC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccc------------cC
Confidence 554 46888999988888888864 446666654211 1222211 11111 12
Q ss_pred eeeEEE--ecCCC-EEE-EecCCCeEEEEecC
Q 012535 401 KFECCL--SGDGG-RVA-TGSYSNLFRVFGCS 428 (461)
Q Consensus 401 v~~~~~--s~~~~-~l~-s~~~dg~i~iw~~~ 428 (461)
+-.+++ .++++ +|+ ++-.++.+.+||..
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 236666 45555 555 44467899999997
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.38 E-value=0.42 Score=41.32 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=124.9
Q ss_pred CCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeeec
Q 012535 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVT 214 (461)
Q Consensus 135 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 214 (461)
+..|.+-|+..+........... +.-.+|..+.+ +.-. ...++++| +.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad------------------sAIMnP~~~Vi------------ALra-g~~LQiFn-le 95 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD------------------SAIMNPASKVI------------ALKA-GKTLQIFN-IE 95 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS------------------EEEECSSSSEE------------EEEE-TTEEEEEE-TT
T ss_pred CCEEEEEECCCCCCccccccccc------------------eeeeCCCccEE------------EEec-CCeEEEec-hH
Confidence 34678888877543322222211 34556776654 3332 67899999 32
Q ss_pred ccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCC
Q 012535 215 SQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 294 (461)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 294 (461)
. ....+.+ .-...|.--.|-.+ +.|+--.+..|+-|++.....+.++++..+ .+. ...|..-..+++.
T Consensus 96 t------K~klks~--~~~e~VvfWkWis~-~~L~lVT~taVyHWs~~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~~ 163 (365)
T 2xzh_A 96 M------KSKMKAH--TMTDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAKQ 163 (365)
T ss_dssp T------TEEEEEE--ECSSCEEEEEECSS-SEEEEEESSEEEEEESSTTCCCEEEEECCG-GGT--TCEEEEEEECTTS
T ss_pred H------hhhhcce--ecCCccEEEEecCC-CeEEEEcCCcEEEEcccCCCCCceeeecch-hcc--cceEEEEEECCCC
Confidence 2 1122221 11234544455433 344444567899999986666666654332 332 4677788888988
Q ss_pred CCeEEEEec-------CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc--C-CCEEEEec---C
Q 012535 295 CNMLAYSSS-------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--N-GRHILSRD---Y 361 (461)
Q Consensus 295 ~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~-g~~l~s~~---d 361 (461)
++++..+- .|.+.+|..+.+. ...+++|. +....+.+.- . .++++-+. .
T Consensus 164 -kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGha------------a~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 164 -KWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHA------------ASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTTTE-----EEEECCSE------------EEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred -CEEEEEeEeccCCccceeEEEEeecccc-----cceeeeee------------eeeEEEecCCCCCCceEEEEEEecCC
Confidence 76654432 3678888887764 24455543 2222222211 1 11222232 2
Q ss_pred -CeEEEEEccCC--CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 362 -MTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 362 -~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
+.++|-++..+ +.+....+.-+ +. .+....+| ++ .++..++.-..+..-+.-|.|++||+.++.+.
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vd--i~-fppea~~D--FP-Vamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVD--VF-FPPEAQND--FP-VAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEE--EC-CCTTCTTC--CE-EEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred CcEEEEEEcCCCCCCCCCcccccce--ee-CCccccCC--ce-EEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 68999988542 22111100000 00 00001112 22 27888888888888888999999999999765
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.34 E-value=0.11 Score=46.75 Aligned_cols=125 Identities=11% Similarity=0.173 Sum_probs=79.1
Q ss_pred ceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCce-----------eeeccCCCCCCCCCcceEEEEEeCCCC--CeEEEE
Q 012535 235 HINSISNNSDGETFISADDLRINLWNLEISNQSF-----------NIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYS 301 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~~~ 301 (461)
.+..+..+|+|++||...+..|.|-.+..+.... ..+.+.+.+ ......|..+.|+|-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 5677999999999999888899999887322110 111121111 11357899999999653 489999
Q ss_pred ecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEE--ecC-CeEEE
Q 012535 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDY-MTLKL 366 (461)
Q Consensus 302 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s--~~d-~~i~v 366 (461)
..|+.|++||+...... +. .+.... ..-.+......|.+++|.+++-.|.. .++ |.|+-
T Consensus 146 tsD~~Ir~yDl~~s~~~--P~-~L~k~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEK--PI-VLNKPN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSC--CE-EESCCC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCC--Cc-chhccc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 99999999999873321 11 222110 00011223367899999998876665 334 77765
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.27 E-value=0.26 Score=45.64 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=35.9
Q ss_pred cceeeEEeCCCCCEEEEeC-CCeEEEEEccCCCCceeeeccCCCCC--CCCCcceEEEEEeCC
Q 012535 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPT 293 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~ 293 (461)
.....++|.|+|+++++-. .+.|++++...+. ...+..+.. .+ ......+..|+|+|+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-~~~~~~~~~-~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS-VKTVFQVPE-IVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTT-CCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-EeEEecCCc-cccccCCCCceeEEEECCC
Confidence 4567899999999888874 4578888764332 222211111 11 113456789999995
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.24 E-value=0.59 Score=41.57 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=36.0
Q ss_pred cceeEEEEc-------cCCCEEEEec-CCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEE
Q 012535 342 ASISDIKFA-------RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (461)
Q Consensus 342 ~~v~~l~~s-------~~g~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (461)
.....++|. .+|.++++.- .+.|...++...+........-.. ....+..+++.|||.++
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~------------~~~rp~~v~~~pDG~ly 326 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN------------VFGRLRDVVIDDDGGIL 326 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT------------TSCCEEEEEECTTSCEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC------------CCCCeeEEEECCCCcEE
Confidence 357788883 4676666643 378888887642222111110000 01123589999999877
Q ss_pred EEec
Q 012535 414 ATGS 417 (461)
Q Consensus 414 ~s~~ 417 (461)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.21 E-value=0.51 Score=42.61 Aligned_cols=148 Identities=10% Similarity=0.169 Sum_probs=99.1
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
+..|.+.|+.......+ ..-..-+.-.+|.. +.+|.-. ..++.|+|+.+... +..+...
T Consensus 47 ~~~vvIiDl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnle~K~k----lks~~~~---- 105 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSK----MKAHTMT---- 105 (494)
T ss_dssp CCEEEEEETTSTTSCEE-----------EECCCSEEEECSSS-SCEEEEE-TTEEEEEETTTTEE----EEEEECS----
T ss_pred CCeEEEEECCCCCccee-----------cccccceeeeCCCC-cEEEEec-CCeEEEEchHHhhh----hcceecC----
Confidence 44777778776554422 12223466788987 7777654 78999999998765 3333332
Q ss_pred ccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
..|.--.|-. .+.|+--.+..|+-|++.....+.+.|..|..... .-|..-..+++.++
T Consensus 106 ---------e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~-----------~QIInY~~d~~~kW 164 (494)
T 1bpo_A 106 ---------DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQKW 164 (494)
T ss_dssp ---------SCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTT-----------CEEEEEEECTTSSE
T ss_pred ---------CCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhccc-----------ceEEEEEECCCCCe
Confidence 3466666754 35677677789999999765789999998876532 12346777888888
Q ss_pred EEEec-------CCCeEEEEecCCCCccceeeccCCCCC
Q 012535 413 VATGS-------YSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 413 l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
++..| -.|.+.+|.++.+ ..+.+++|....
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F 201 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEE
T ss_pred EEEEeecccCCcccceEEEeecccc--ccchheeeeeee
Confidence 77443 2478899999855 556777765443
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.19 E-value=1.5 Score=45.75 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=28.7
Q ss_pred cceEEEEEeecCC----CcEEEEEeC-CCeEEEEEccCCcee
Q 012535 113 EKINKIRWCQSAN----SALYLLSTN-DKTIKLWKVQEKKVK 149 (461)
Q Consensus 113 ~~v~~v~~~p~~~----~~~l~~~~~-d~~i~vw~~~~~~~~ 149 (461)
..|.|+++.|.++ +.++++|.. |++|+|+++...+..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 4599999986443 468999986 999999999865444
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.08 E-value=0.78 Score=41.43 Aligned_cols=232 Identities=11% Similarity=0.059 Sum_probs=127.2
Q ss_pred CCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccCCCCCccccccCCCcEEeeeee
Q 012535 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV 213 (461)
Q Consensus 134 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~ 213 (461)
.+..|.|-|+..+........... +.-.+|..+.+ +.- ....+.++| +
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad------------------sAIMnP~~~ii------------ALr-ag~~lQiFn-l 93 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD------------------SAIMNPASKVI------------ALK-AGKTLQIFN-I 93 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS------------------EEEECSSSSCE------------EEE-ETTEEEEEE-T
T ss_pred CCCeEEEEECCCCCcceecccccc------------------eeeeCCCCcEE------------EEe-cCCeEEEEc-h
Confidence 334788888877554332222211 34556766654 332 367899999 3
Q ss_pred cccCccccceeeEeeecccccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC
Q 012535 214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (461)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 293 (461)
.. ....+.+ .-...|.--.|-. .+.|+...+..|+-|++.....+.++++..+ .+. ...|..-..+++
T Consensus 94 e~------K~klks~--~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~ 161 (494)
T 1bpo_A 94 EM------KSKMKAH--TMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAK 161 (494)
T ss_dssp TT------TEEEEEE--ECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCG-GGT--TCEEEEEEECTT
T ss_pred HH------hhhhcce--ecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecch-hcc--cceEEEEEECCC
Confidence 22 1112221 1123444444543 3345555678899999986556666654332 232 467788888999
Q ss_pred CCCeEEEEec-------CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccC---CCEEEEec---
Q 012535 294 HCNMLAYSSS-------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD--- 360 (461)
Q Consensus 294 ~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---g~~l~s~~--- 360 (461)
. ++++..+- .|.+.+|..+.+. ...+++|. +....+.+..+ ...++-+.
T Consensus 162 ~-kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGha------------a~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 162 Q-KWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHA------------ASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp S-SEEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSE------------EEEEEEECTTCSSEEEEEEEEECST
T ss_pred C-CeEEEEeecccCCcccceEEEeeccccc-----cchheeee------------eeeEEEecCCCCCCceEEEEEEecC
Confidence 8 77664432 4678888887764 24455553 33333333211 11222232
Q ss_pred -CCeEEEEEccCC--CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 361 -YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 361 -d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.+.+.|-++..+ +.+....+.-. +. .+..+.+| ++ .++..++.-..+..-+.-|.|++||+.++.+.
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vd--v~-fppe~~~D--FP-vamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVD--VF-FPPEAQND--FP-VAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEE--CC-CCTTSTTC--CE-EEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCcEEEEEEcCCCccCCCCccceeee--ee-CCcccccC--ce-eEEEecccCCEEEEEecCceEEEEecccceee
Confidence 278999998642 11111000000 00 00001112 22 27888988888888899999999999999765
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.02 E-value=0.32 Score=43.35 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=44.3
Q ss_pred cceeeEEeCCCCC-EEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCC---CCCeEEEEec------
Q 012535 234 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------ 303 (461)
Q Consensus 234 ~~v~~i~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~------ 303 (461)
.....|+|.|+++ ++++-..|.|++++.. +.....+..+. ............++++|+ +..+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4567899999999 7766667999999854 22111111110 011122345689999995 4144444332
Q ss_pred -CCeEEEEECCC
Q 012535 304 -KGSIRLIDMRQ 314 (461)
Q Consensus 304 -dg~i~iwd~~~ 314 (461)
...|..|++..
T Consensus 96 ~~~~v~r~~~~~ 107 (353)
T 2g8s_A 96 AGTAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEEEECT
T ss_pred ceeEEEEEEECC
Confidence 23566666543
No 321
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.58 E-value=4.1 Score=40.52 Aligned_cols=173 Identities=12% Similarity=0.027 Sum_probs=89.2
Q ss_pred cceeeEEeCCCCCEEEEeCCCeEEEEEccCCCC-ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEEC
Q 012535 234 YHINSISNNSDGETFISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~ 312 (461)
..|.++.-..+|.+-+...+| +..++..+... .+..+........-....|.++.-..++ . |..|+ ++-|..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-Q-LWIAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-C-EEEEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-C-EEEEe-CCcHhhcCc
Confidence 457888888888766655544 66666543211 1111110000000123468888888877 4 44455 457999998
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccC----CCCCe---eEEeeccCc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM----DSGPV---ATFQVHEHL 385 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~----~~~~~---~~~~~~~~~ 385 (461)
.+++. ..+....... .+ ....|.++...++|++.++...+-|.++|... ..... ..+....+.
T Consensus 400 ~~~~~-----~~~~~~~~~~---~~--~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 400 ATRQF-----IHYNIVDNTG---TY--NTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TTTEE-----EEEEEECCC-----C--BSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CCCcE-----EEeecCCCcC---CC--CCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 87653 1111100000 00 11458888888887766654456788888642 00111 011111110
Q ss_pred cccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEEecCCCC
Q 012535 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (461)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 431 (461)
.. ..|.++...++|++.+.++..+-|..+|..+++
T Consensus 470 --------~~---~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 470 --------SG---MFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp --------SC---SCEEEEEECTTSCEEEEETTCSSEEEEETTTTE
T ss_pred --------cc---ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc
Confidence 01 124578888888877633333457788887654
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.41 E-value=1 Score=36.54 Aligned_cols=114 Identities=11% Similarity=-0.110 Sum_probs=63.2
Q ss_pred ceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCe
Q 012535 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 363 (461)
Q Consensus 284 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~ 363 (461)
.+..++|+|++ .+.++ .+|.+.-.+..+... ...... ..+-. -.+- ....++.|.|+|.+.++ +||.
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-~~W~~s-~t~IG------~~Gw-~~F~a~~fD~~G~LYav-~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-DNWMGR-AKKIG------NGGW-NQFQFLFFDPNGYLYAV-SKDK 108 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-CCHHHH-CEEEE------CSCG-GGCSEEEECTTSCEEEE-ETTE
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-cccccc-ccEec------cccc-ccceEEEECCCCCEEEe-CCCE
Confidence 56799999988 65555 788776666544221 000000 00000 0000 12478999999988888 7798
Q ss_pred EEEEEccCCCCC--e--eEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 364 LKLWDINMDSGP--V--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 364 i~vwd~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
|+-++-.+.+.. + ...-+..++. ++..+.+.|+|.+.+.. |+.++-+
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~-------------~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWS-------------GFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGG-------------GEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCC-------------ceEEEEECCCceEEEEe--CCcEEec
Confidence 887775321111 0 0111111111 12488999999988777 7775433
No 323
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.19 E-value=3.4 Score=38.12 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=35.9
Q ss_pred cceeeEEeCCCCC--EEEEeCCCeEEEEEccCCCCceeeeccCCCCCC----CCCcceEEEEEeCC
Q 012535 234 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT 293 (461)
Q Consensus 234 ~~v~~i~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~ 293 (461)
.....|+|.|++. +|++-..|.|++++.........+.++...... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999985 666667899999975422111111111111111 12456789999996
No 324
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.69 E-value=3 Score=35.73 Aligned_cols=148 Identities=9% Similarity=0.075 Sum_probs=72.1
Q ss_pred CCCEEEEe-C-----CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-----CeEEEEEC
Q 012535 244 DGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 312 (461)
Q Consensus 244 ~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~ 312 (461)
++.+++.| . ...+.+||+.+..- .... .+.........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQW--SMLG----DMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEE--EEEE----ECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeE--EECC----CCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeC
Confidence 56666665 2 23678888764332 1111 11111111122222 45 788888765 45888998
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C-----CeEEEEEccCCCCCeeEEeeccCcc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
.+..-. .+..+.... .....+.+ ++++++.|+ + ..+.+||+.+ .....+.......
T Consensus 183 ~~~~W~--~~~~~p~~r------------~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~r 244 (301)
T 2vpj_A 183 HTGHWT--NVTPMATKR------------SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT--DSWTTVTSMTTPR 244 (301)
T ss_dssp TTTEEE--EECCCSSCC------------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEEECCCSSCC
T ss_pred CCCcEE--eCCCCCccc------------ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC--CcEEECCCCCCcc
Confidence 776421 111111110 11122222 566666653 2 5789999875 2222222111100
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEecCC-----CeEEEEecCCCCc
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSA 432 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~~ 432 (461)
. ...+..-++++++.|+.+ ..+.+||+++.+-
T Consensus 245 ~--------------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 245 C--------------YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp B--------------SCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred c--------------ceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 0 012222377788888765 4688899887643
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.60 E-value=3.1 Score=43.84 Aligned_cols=191 Identities=14% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCcEEeeeeecccCccccceeeEeeeccc--ccceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCC
Q 012535 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAH--DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (461)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (461)
...+.++| +..... +..| ...|.--.|-.. +.|+...+..|..|++.....+.++++.. ..+.
T Consensus 85 g~~lQiFn-l~~k~k----------lks~~~~e~VvfWkWis~-~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~-- 149 (1630)
T 1xi4_A 85 GKTLQIFN-IEMKSK----------MKAHTMTDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA-- 149 (1630)
T ss_pred CCeEEEee-hHHhhh----------hcccccCCCceEEEecCC-CeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--
Confidence 67899998 432211 1222 233444444433 34444466789999997544554443322 1222
Q ss_pred CcceEEEEEeCCCCCeEEEEe-------cCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc--cC
Q 012535 282 TEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--RN 352 (461)
Q Consensus 282 ~~~v~~v~~~p~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~ 352 (461)
...|..-..+++. ++++..+ -.|.+.+|....+. ...+++|. +....+... +.
T Consensus 150 ~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~-----sQ~iegha------------~~F~~~~~~~~~~ 211 (1630)
T 1xi4_A 150 GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHA------------ASFAQFKMEGNAE 211 (1630)
T ss_pred cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc-----chhhhHhH------------hhhheeccCCCCC
Confidence 4667777888888 6665433 35788888887654 24444443 222222221 11
Q ss_pred -CCEEEEec----CCeEEEEEccCC--CCCeeEEeeccCccccccccccCCCccceeeEEEecCCCEEEEecCCCeEEEE
Q 012535 353 -GRHILSRD----YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (461)
Q Consensus 353 -g~~l~s~~----d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (461)
...++-+. .+.+.|-++..+ +.+ .+......+. .+.-+.+|. +| ++..++.-..+..-+.-|.|++|
T Consensus 212 ~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~--~f~kk~~~~~-~~~~~~~Df--pv-~~~vs~k~g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPKKAVDVF-FPPEAQNDF--PV-AMQISEKHDVVFLITKYGYIHLY 285 (1630)
T ss_pred CceEEEEEEecCCCceEEEEecCCCccCCC--CCcccccccc-CCcccccCc--ce-EEEeccccCEEEEEecCceEEEE
Confidence 11222121 268888888542 111 1110000000 000011222 22 77788887888888889999999
Q ss_pred ecCCCCcc
Q 012535 426 GCSEGSAE 433 (461)
Q Consensus 426 ~~~~~~~~ 433 (461)
|+.++...
T Consensus 286 d~~t~~~i 293 (1630)
T 1xi4_A 286 DLETGTCI 293 (1630)
T ss_pred ecccchhh
Confidence 99998654
No 326
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.78 E-value=4.4 Score=34.95 Aligned_cols=136 Identities=7% Similarity=0.026 Sum_probs=71.5
Q ss_pred EeCCCCCEEEEeC---CC--eEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEec-CCeEEEEECC
Q 012535 240 SNNSDGETFISAD---DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR 313 (461)
Q Consensus 240 ~~~~~~~~l~~~~---d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~ 313 (461)
.|+++++.|+-.. ++ .|...++... ...++ ..+. + .+++|++ +.|+..+. ...|..-++.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~l--------t~~~--~--~~~~~~g-~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKI--------KNHY--L--FTCNTSD-RYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEE--------ESSC--C--CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEE--------eCCC--c--eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence 5677888877542 34 4444455422 22222 1121 1 4567888 66665554 6778888876
Q ss_pred CcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec--C-CeEEEEEccCCCCCeeEEeeccCcccccc
Q 012535 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (461)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~--d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 390 (461)
.+.. ...+.. ... ..+.|++.+|+-.+ + ..|..-++. +.....+....
T Consensus 176 g~~~----~~l~~~---------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~------- 226 (302)
T 3s25_A 176 SQSE----ALFYDC---------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN------- 226 (302)
T ss_dssp TTEE----EEEECS---------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC-------
T ss_pred CCCE----EEEeCC---------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC-------
Confidence 6542 111111 122 23569999888643 2 355555554 44444443211
Q ss_pred ccccCCCccceeeEEEecCCCEEEEec--CCCeEEEEecCCC
Q 012535 391 DLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSEG 430 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~ 430 (461)
...|+|++++|.-++ ..+.|..-+++..
T Consensus 227 ------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 227 ------------IEHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ------------EEEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred ------------cceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 233777787776542 3456666666644
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.66 E-value=1.7 Score=45.65 Aligned_cols=148 Identities=10% Similarity=0.169 Sum_probs=95.5
Q ss_pred CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCC
Q 012535 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (461)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (461)
..+|.|.|+..+....+ .+-..-+.-.+|.. +.+|.-. ..++.|+|+.+... +..+...
T Consensus 47 ~~~vvIidl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~k----lks~~~~---- 105 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSK----MKAHTMT---- 105 (1630)
T ss_pred CceEEEEECCCCCCccc-----------ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhh----hcccccC----
Confidence 44677777775544321 12223355678887 6666654 78999999988764 3333332
Q ss_pred ccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEecCCCE
Q 012535 333 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (461)
Q Consensus 333 ~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (461)
.+|.--.|-. .+.|+--++..|+-|++.....|.+.|..|....+ ..|..-.-+++.+|
T Consensus 106 ---------e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~-----------~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 106 ---------DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQKW 164 (1630)
T ss_pred ---------CCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhccc-----------CeeEEeeeCCCCCe
Confidence 3466667754 35666667779999999755678888887765432 11346677888888
Q ss_pred EEEec-------CCCeEEEEecCCCCccceeeccCCCCC
Q 012535 413 VATGS-------YSNLFRVFGCSEGSAESTTLEASKNPM 444 (461)
Q Consensus 413 l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~ 444 (461)
++..| -.|.+.+|.++.+ ..+.+++|....
T Consensus 165 ~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F 201 (1630)
T 1xi4_A 165 LLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASF 201 (1630)
T ss_pred EEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhh
Confidence 77443 3588999999854 445667665444
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=90.38 E-value=7.8 Score=33.11 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=17.9
Q ss_pred CCCEEEEecCCC-----eEEEEecCCCCc
Q 012535 409 DGGRVATGSYSN-----LFRVFGCSEGSA 432 (461)
Q Consensus 409 ~~~~l~s~~~dg-----~i~iw~~~~~~~ 432 (461)
++++++.|+.++ .+.+||+.+.+-
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 677888887653 489999987743
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.34 E-value=8.1 Score=33.24 Aligned_cols=106 Identities=9% Similarity=0.079 Sum_probs=57.9
Q ss_pred EEeCCCCCEEEEe-C-CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC--CeEEEEECCC
Q 012535 239 ISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQ 314 (461)
Q Consensus 239 i~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--g~i~iwd~~~ 314 (461)
.+++++++.|.-. . ...|..-++.... ...+. . +.. ...+.|++ ..|+....+ ..|..-++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l~-------~---~~~-~~~~~P~g-~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFY-------D---CNC-YKPVVLDD-TNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTE-EEEEE-------C---SCE-EEEEEEET-TEEEEEEGGGTTEEEEECSSS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCC-EEEEe-------C---CCc-cceeeecC-CEEEEEEcCCCcEEEEEECCC
Confidence 4567888888766 3 6777777776433 22221 1 111 23456888 677765544 3566666655
Q ss_pred cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecC---CeEEEEEccCCCCCeeEEe
Q 012535 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQ 380 (461)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d---~~i~vwd~~~~~~~~~~~~ 380 (461)
... ..+.. ..+ ..|+|++.+|.-+++ +.|..-++. +...+.+.
T Consensus 217 ~~~-----~~Lt~--------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l~ 262 (302)
T 3s25_A 217 PNP-----VVLTE--------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKELA 262 (302)
T ss_dssp CCC-----EECSC--------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEEE
T ss_pred CCe-----EEEeC--------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEee
Confidence 432 22221 123 347888998886533 555555554 54444443
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.66 E-value=17 Score=33.43 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=21.6
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCcee
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK 149 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~ 149 (461)
....|+|. ++|+++++-...+.|++++..+++..
T Consensus 28 ~P~~~a~~--pdG~l~V~e~~gg~I~~~~~~~g~~~ 61 (454)
T 1cru_A 28 KPHALLWG--PDNQIWLTERATGKILRVNPESGSVK 61 (454)
T ss_dssp SEEEEEEC--TTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred CceEEEEc--CCCcEEEEEcCCCEEEEEECCCCcEe
Confidence 36799998 56765555433347888876555543
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.97 E-value=5.4 Score=37.41 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=53.8
Q ss_pred cceeeEEeCCCCCEEEEe--CCCeEEEEEccCCCCcee--eeccCC--CCCCCCCcceEEEEEeCCCCCeEEEEecCCeE
Q 012535 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN--IVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (461)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~--~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 307 (461)
.....+.++|+|++++.+ -+.++.++|++.....+. +.+.+. .............+|.++| ....+...|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence 345678899999999887 599999999984221110 000000 0011134556889999998 666777789999
Q ss_pred EEEECCCc
Q 012535 308 RLIDMRQS 315 (461)
Q Consensus 308 ~iwd~~~~ 315 (461)
.-|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99998653
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.87 E-value=14 Score=31.58 Aligned_cols=24 Identities=0% Similarity=-0.067 Sum_probs=18.2
Q ss_pred CCCEEEEecCC-----CeEEEEecCCCCc
Q 012535 409 DGGRVATGSYS-----NLFRVFGCSEGSA 432 (461)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iw~~~~~~~ 432 (461)
++++++.|+.+ ..+.+||+.+.+-
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 67788888754 5789999987753
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.87 E-value=26 Score=34.71 Aligned_cols=208 Identities=9% Similarity=0.025 Sum_probs=101.6
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeeecCCCccCCCCCccccccccCcceeecCCCcccccccC
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (461)
..|.++.-. .++. |-.|+ ++-|..++.++++.......... .......+. ++....+|..
T Consensus 373 ~~v~~i~~d--~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~--~~~~~~~v~-------~i~~d~~g~l------- 432 (758)
T 3ott_A 373 NRIRHIYED--KEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNT--GTYNTNWTY-------YIFEDTAGQL------- 432 (758)
T ss_dssp SCEEEEEEC--TTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC----CBSSSEE-------EEEECTTSEE-------
T ss_pred CceEEEEEC--CCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCc--CCCCCceEE-------EEEEcCCCCE-------
Confidence 347777765 4454 44455 45688999888766543321110 000011122 2333334443
Q ss_pred CCCCccccccCCCcEEeeeeecccCccccceee--Eeee--cc-cccceeeEEeCCCCCEEEE-eCCCeEEEEEccCCCC
Q 012535 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCR--RIYA--HA-HDYHINSISNNSDGETFIS-ADDLRINLWNLEISNQ 266 (461)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~--~~-~~~~v~~i~~~~~~~~l~~-~~d~~i~iwd~~~~~~ 266 (461)
-.|+..+.+..++ ............. ..+. .+ ....|.++...++|++-+. +..+-|..+|..+..
T Consensus 433 ------WigT~~~Gl~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~- 504 (758)
T 3ott_A 433 ------WISTCLGGIFVVD-KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE- 504 (758)
T ss_dssp ------EEEESSSCEEEEE-HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTE-
T ss_pred ------EEEECCCceEEEc-cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc-
Confidence 5566666677776 2210000000000 0110 11 1235888888888887663 444457778876432
Q ss_pred ceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeE
Q 012535 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 346 (461)
..... . ..+. ....+.++....+| . |..|+.+ -+..||..+... ..+.....+ ...|.+
T Consensus 505 ~~~~~-~--~~~~-~~~~~~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~-----~~~~~~gl~---------~~~i~~ 563 (758)
T 3ott_A 505 VTKLF-A--DELT-GEKSPNYLLCDEDG-L-LWVGFHG-GVMRINPKDESQ-----QSISFGSFS---------NNEILS 563 (758)
T ss_dssp EEEEC-T--TTSC-GGGCEEEEEECTTS-C-EEEEETT-EEEEECC--CCC-----CBCCCCC------------CCEEE
T ss_pred eEEec-C--CCcC-CCcccceEEECCCC-C-EEEEecC-ceEEEecCCCce-----EEecccCCC---------ccceEE
Confidence 21110 0 0111 13467788888877 4 4445554 488888766542 112110000 145777
Q ss_pred EEEccCCCEEEEecCCeEEEEEccC
Q 012535 347 IKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 347 l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
+... +|.+.+++.. -|..+|..+
T Consensus 564 i~~~-~g~lWi~t~~-Gl~~~~~~~ 586 (758)
T 3ott_A 564 MTCV-KNSIWVSTTN-GLWIIDRKT 586 (758)
T ss_dssp EEEE-TTEEEEEESS-CEEEEETTT
T ss_pred EEEC-CCCEEEECCC-CeEEEcCCC
Confidence 7764 6766555544 477788764
No 334
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=86.10 E-value=15 Score=31.24 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=34.6
Q ss_pred CCCEEEEe-CC-----CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-----CeEEEEEC
Q 012535 244 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 312 (461)
Q Consensus 244 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~ 312 (461)
++++++.| .+ ..+.+||+.+.. ...+. .+.........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~----~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGH--WTNVT----PMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE--EEEEC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCc--EEeCC----CCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeC
Confidence 56666665 32 567888887442 22111 11111111122222 44 788888775 46889999
Q ss_pred CCcc
Q 012535 313 RQSA 316 (461)
Q Consensus 313 ~~~~ 316 (461)
.+.+
T Consensus 230 ~~~~ 233 (301)
T 2vpj_A 230 RTDS 233 (301)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8764
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=85.05 E-value=17 Score=31.04 Aligned_cols=148 Identities=9% Similarity=0.078 Sum_probs=71.9
Q ss_pred CCCEEEEe-C-----CCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-----CeEEEEEC
Q 012535 244 DGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 312 (461)
Q Consensus 244 ~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~ 312 (461)
++.+++.| . -..+.+||..+..- .... .+......-..+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEW--HLVA----PMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEE--EECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeE--eECC----CCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence 56666665 2 24677888874321 1111 11111111122223 45 788888765 45888998
Q ss_pred CCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C-----CeEEEEEccCCCCCeeEEeeccCcc
Q 012535 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
.+.+-. .+..+.... .....+.+ ++++++.|+ + ..+.+||+.+ .....+.......
T Consensus 192 ~~~~W~--~~~~~p~~r------------~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~r 253 (308)
T 1zgk_A 192 ERNEWR--MITAMNTIR------------SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET--ETWTFVAPMKHRR 253 (308)
T ss_dssp TTTEEE--ECCCCSSCC------------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECCCCSSCC
T ss_pred CCCeEe--eCCCCCCcc------------ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC--CcEEECCCCCCCc
Confidence 775421 111111110 11122222 566666653 2 5789999875 2222221111000
Q ss_pred ccccccccCCCccceeeEEEecCCCEEEEecCC-----CeEEEEecCCCCc
Q 012535 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSA 432 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~~ 432 (461)
. . ..++. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 254 ~----------~---~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 254 S----------A---LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp B----------S---CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred c----------c---eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 0 0 12332 367788888754 4688899887643
No 336
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.67 E-value=16 Score=33.65 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=23.3
Q ss_pred cceEEEEEeCCCCCeEEEEecCCeEEEEECC
Q 012535 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (461)
...+.|+|.|++...|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4468999999983145556788999999754
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=82.38 E-value=25 Score=30.79 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=20.3
Q ss_pred EecCCCEEEEecCCC------eEEEEecCCCCccceeeccC
Q 012535 406 LSGDGGRVATGSYSN------LFRVFGCSEGSAESTTLEAS 440 (461)
Q Consensus 406 ~s~~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~ 440 (461)
...++++++.|+.++ .|.++++++++......+.|
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 345788888888542 46667998887665444433
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.29 E-value=6.4 Score=36.95 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=51.3
Q ss_pred cceeEEEEccCCCEEEEec--CCeEEEEEccCC-----CCC---eeEEeeccCccccccccccCCCccceeeEEEecCCC
Q 012535 342 ASISDIKFARNGRHILSRD--YMTLKLWDINMD-----SGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~--d~~i~vwd~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (461)
.....+.++|||+|+++++ +.++.++|+++- .+. -..+.+..... ..-+..+|.++|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G------------lGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG------------LGPLHTTFDGRGN 390 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC------------SCEEEEEECSSSE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC------------CcccEEEECCCCc
Confidence 4567899999999999976 489999999741 111 11111111000 0114789999996
Q ss_pred EEEEecCCCeEEEEecCC
Q 012535 412 RVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 412 ~l~s~~~dg~i~iw~~~~ 429 (461)
...|---|..|.-|++..
T Consensus 391 aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEETTTTEEEEEEHHH
T ss_pred eEeeeeecceEEEEeccH
Confidence 666777899999999975
No 339
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=81.06 E-value=25 Score=29.93 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=19.2
Q ss_pred CcEEEEEeCC----CeEEEEEccCCceeEEe
Q 012535 126 SALYLLSTND----KTIKLWKVQEKKVKKVF 152 (461)
Q Consensus 126 ~~~l~~~~~d----~~i~vw~~~~~~~~~~~ 152 (461)
+..++.|+.+ ..+.+||..+++.....
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 5577777654 67888999888765553
No 340
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=79.98 E-value=27 Score=29.75 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=34.5
Q ss_pred CCCEEEEe-CC-----CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecC-----CeEEEEEC
Q 012535 244 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 312 (461)
Q Consensus 244 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~ 312 (461)
++.+++.| .+ ..+.+||+.+.. ..... .+.........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMIT----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCC----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 56666665 32 468888886432 21111 11111222222333 45 788888775 46889998
Q ss_pred CCcc
Q 012535 313 RQSA 316 (461)
Q Consensus 313 ~~~~ 316 (461)
.+.+
T Consensus 239 ~~~~ 242 (308)
T 1zgk_A 239 ETET 242 (308)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8764
No 341
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.67 E-value=36 Score=30.31 Aligned_cols=75 Identities=7% Similarity=0.045 Sum_probs=41.5
Q ss_pred cceeeEEeCCC----CCEEEEe--CCCeEEEEE---ccCCC--CceeeeccCCCCCCCCCcceEEEEEe-CCCCCeEEEE
Q 012535 234 YHINSISNNSD----GETFISA--DDLRINLWN---LEISN--QSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYS 301 (461)
Q Consensus 234 ~~v~~i~~~~~----~~~l~~~--~d~~i~iwd---~~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~ 301 (461)
..+..|+++|+ ++.|.-. ....+.--. ++... ..++.+ .-.+....-..+++. .+| .++++-
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-----G~kg~~s~~~~~~~D~~~G-~ly~~~ 293 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-----GNRGKYNDAIALAYDPKTK-VIFFAE 293 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-----EECCTTCCEEEEEECTTTC-EEEEEE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-----eecCCCCCcceEEEeCCCC-eEEEEe
Confidence 56889999998 6777665 333333222 11111 111110 001111233456676 566 777777
Q ss_pred ecCCeEEEEECCC
Q 012535 302 SSKGSIRLIDMRQ 314 (461)
Q Consensus 302 ~~dg~i~iwd~~~ 314 (461)
-....|..|+..+
T Consensus 294 ~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 294 ANTKQVSCWNTQK 306 (381)
T ss_dssp SSSSEEEEEETTS
T ss_pred ccCCeEEEEeCCC
Confidence 7888999999876
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.95 E-value=9.7 Score=33.33 Aligned_cols=108 Identities=12% Similarity=0.163 Sum_probs=60.8
Q ss_pred CeEEEEecCCeEEEEECCCcccccccccccccccCCCccccccccccceeEEE---EccCCCEEEEe--cCCeEEEEEcc
Q 012535 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSR--DYMTLKLWDIN 370 (461)
Q Consensus 296 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~s~~g~~l~s~--~d~~i~vwd~~ 370 (461)
.+++.++.||.|.-.|..+++..++. +.... .++.... ...++..++.. .||.|..++..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~----~~~~~-----------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSI----EPENF-----------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEE----CGGGS-----------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe----cCCcc-----------CCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 47888999999999999999875432 22100 0011000 00133344442 47889888877
Q ss_pred CCCCCeeEEeeccCccccccccccCCCccceeeEEEe-----------cCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-----------GDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
. +.....+.... .+. . .-+... ..+..+++|+.+|.++-.|+.+|+..
T Consensus 76 ~-G~~~~~~~~~~-lv~-~------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 76 Q-GLQKLPLSIRQ-LVS-T------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp T-EEEEEEEEHHH-HHT-T------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred C-CcEEeeecccc-cee-c------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 4 43322222111 000 0 011111 14567889999999999999999765
No 343
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=77.85 E-value=31 Score=29.21 Aligned_cols=64 Identities=8% Similarity=0.128 Sum_probs=34.1
Q ss_pred CCCEEEEe-CC-----CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC-----eEEEEEC
Q 012535 244 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLIDM 312 (461)
Q Consensus 244 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~iwd~ 312 (461)
++.+++.| .+ ..+.+||+.+.. ...+. .+....... +++.. ++ ++++.|+.++ .+.+||+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~----~~~~~r~~~-~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNA--WRQVA----DMNMCRRNA-GVCAV-NG-LLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTE--EEEEC----CCSSCCBSC-EEEEE-TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCC--EeeCC----CCCCccccC-eEEEE-CC-EEEEECCcCCCcccccEEEEcC
Confidence 56666666 32 468888887432 22111 111111111 22222 45 7888888664 4889998
Q ss_pred CCcc
Q 012535 313 RQSA 316 (461)
Q Consensus 313 ~~~~ 316 (461)
.+.+
T Consensus 275 ~~~~ 278 (302)
T 2xn4_A 275 TTDK 278 (302)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7764
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.09 E-value=53 Score=33.60 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=31.9
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeee
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 154 (461)
..+.+++.. .+..++++-+.|+++|+|++.++++......
T Consensus 236 ~~~~~~~~~--~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEE--TTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeec--CCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 346666666 5567899999999999999999988776554
No 345
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=75.84 E-value=43 Score=29.79 Aligned_cols=158 Identities=9% Similarity=0.068 Sum_probs=79.7
Q ss_pred eEEEEEccCCC-CceeeeccCCCCCCCCCcceEEEEEe---CC---CCCeEEEEe-cCCeEEEEECCCcccccccccccc
Q 012535 255 RINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT---HCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFE 326 (461)
Q Consensus 255 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~---p~---~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 326 (461)
+|.+||+.+.. +..+.+.+...... ....+..+++. |. +..++..+. ..+.|.+||+.+++.. +.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 46667777551 33333333221122 34567888887 32 113333333 4678999999988742 1111
Q ss_pred cccCCCccc--ccccc----ccceeEEEEccC----CCEEEEecCCeEEEEEccC----CCCCee--EEeeccCcccccc
Q 012535 327 EQEAPGTRS--FFTEI----IASISDIKFARN----GRHILSRDYMTLKLWDINM----DSGPVA--TFQVHEHLRPKLC 390 (461)
Q Consensus 327 ~~~~~~~~~--~~~~h----~~~v~~l~~s~~----g~~l~s~~d~~i~vwd~~~----~~~~~~--~~~~~~~~~~~~~ 390 (461)
..-.+.... ...|. ...+..++++|+ ++.|.-..-..-++|.+.+ ...... ...+..+..
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~---- 274 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKY---- 274 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTT----
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCC----
Confidence 110111000 11111 247899999998 7777765432334444432 111111 111111110
Q ss_pred ccccCCCccceeeEEEe-cCCCEEEEecCCCeEEEEecCC
Q 012535 391 DLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSE 429 (461)
Q Consensus 391 ~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~ 429 (461)
.+-..++.. .+|.++++--..+.|..|+...
T Consensus 275 --------s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 275 --------NDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp --------CCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred --------CCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 001245665 5677777778889999999875
No 346
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.38 E-value=48 Score=28.29 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=17.1
Q ss_pred CCCEEEEecCCC-----eEEEEecCCCC
Q 012535 409 DGGRVATGSYSN-----LFRVFGCSEGS 431 (461)
Q Consensus 409 ~~~~l~s~~~dg-----~i~iw~~~~~~ 431 (461)
++++++.|+.++ .+.+||+.+.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 677778877654 58889988764
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.91 E-value=35 Score=34.93 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=29.4
Q ss_pred ceeeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 400 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.+.+++..++..++++-+.|+++|+|++.++++.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 3457778888899999999999999999998765
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=68.38 E-value=92 Score=30.42 Aligned_cols=155 Identities=8% Similarity=0.082 Sum_probs=77.7
Q ss_pred CCCEEEEe-C-C-----CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC--eEEEEECCC
Q 012535 244 DGETFISA-D-D-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQ 314 (461)
Q Consensus 244 ~~~~l~~~-~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~~ 314 (461)
++.+++.| . . ..+.+||..+.. ..... .+...... .+++...++ ++++.|+.++ .+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~--W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTRE--WSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTE--EEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCc--EEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 66666665 2 2 357778877532 21110 12111111 233332355 7888888765 689999887
Q ss_pred cccccccccc---cccccCCCccccccccccceeEEEEccC-CCEEEEecC--------CeEEEEEccCCCCC-----ee
Q 012535 315 SALCDTHSKL---FEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY--------MTLKLWDINMDSGP-----VA 377 (461)
Q Consensus 315 ~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~s~~-g~~l~s~~d--------~~i~vwd~~~~~~~-----~~ 377 (461)
..- ..+.. +.... .....+.+..+ ++.++.|+. +.+.+||+.+ ... ..
T Consensus 523 ~~W--~~~~~~g~~p~~r------------~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~ 587 (695)
T 2zwa_A 523 EIF--KDVTPKDEFFQNS------------LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVI 587 (695)
T ss_dssp TEE--EECCCSSGGGGSC------------CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEE
T ss_pred Cce--EEccCCCCCCCcc------------cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEE
Confidence 642 11111 11111 12233455554 556665531 4688999986 331 22
Q ss_pred EEeeccCccccccccccCCCccceeeEEEecCCCEEEEecC--------CCeEEEEecCCCCcc
Q 012535 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--------SNLFRVFGCSEGSAE 433 (461)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--------dg~i~iw~~~~~~~~ 433 (461)
.+........ . . .+++...++++++.||. ...|.+||+.+.+-.
T Consensus 588 ~~~~~p~~~R-~---~--------~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 588 KKLQHPLFQR-Y---G--------SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECGGGCC-B---S--------CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EcCCCCCCCc-c---c--------ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 2222110000 0 0 13444444778888874 356899999877533
No 349
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.87 E-value=68 Score=31.29 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=30.5
Q ss_pred cceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeee
Q 012535 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (461)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 154 (461)
..|.++.+. ..++++-+.|+++|+|+++++++......
T Consensus 222 ~~Is~~~~~----~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH----ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET----TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC----CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346666553 56999999999999999999988877666
No 350
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.41 E-value=37 Score=35.61 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=30.9
Q ss_pred ceEEEEEeecCCCcEEEEEeCCCeEEEEEccCCceeEEeeee
Q 012535 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (461)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 155 (461)
.+.+++.. .+..++++-+.|+++|+|++.++.+.......
T Consensus 239 ~~vs~~~~--~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEE--TTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeecc--CCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 34455555 55678999999999999999999887776543
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.08 E-value=27 Score=36.55 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=28.2
Q ss_pred eeEEEecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
.+++..++..++++-+.|+++|||++.++++.
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 36777888899999999999999999999765
No 352
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.79 E-value=91 Score=30.44 Aligned_cols=27 Identities=0% Similarity=-0.155 Sum_probs=23.6
Q ss_pred ecCCCEEEEecCCCeEEEEecCCCCcc
Q 012535 407 SGDGGRVATGSYSNLFRVFGCSEGSAE 433 (461)
Q Consensus 407 s~~~~~l~s~~~dg~i~iw~~~~~~~~ 433 (461)
..+..+|++-+.|.++|+|+++++++.
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv 254 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLI 254 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceE
Confidence 445789999999999999999999755
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=55.67 E-value=1e+02 Score=26.80 Aligned_cols=29 Identities=0% Similarity=-0.002 Sum_probs=23.9
Q ss_pred cEEEEEeCCCeEEEEEccCCceeEEeeee
Q 012535 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (461)
Q Consensus 127 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 155 (461)
..+++++.||.|.-.|.++|+.+-.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 47899999999999999999877766543
No 354
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=51.74 E-value=1.1e+02 Score=25.94 Aligned_cols=23 Identities=0% Similarity=0.106 Sum_probs=15.9
Q ss_pred CCCCeEEEEecC------CeEEEEECCCcc
Q 012535 293 THCNMLAYSSSK------GSIRLIDMRQSA 316 (461)
Q Consensus 293 ~~~~~l~~~~~d------g~i~iwd~~~~~ 316 (461)
++ ++++.|+.+ ..+.+||+.+.+
T Consensus 158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 45 677777652 358899988764
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.08 E-value=42 Score=31.97 Aligned_cols=60 Identities=7% Similarity=0.157 Sum_probs=36.0
Q ss_pred ceEEEEEeCCCCCeEEEEecC------------CeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEcc
Q 012535 284 VITSAEFHPTHCNMLAYSSSK------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (461)
Q Consensus 284 ~v~~v~~~p~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 351 (461)
..-.|+|+|.| ++++.-..+ ..+.+.+..++++ .+-+..+. ...++.++|+|
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~----~rf~~~P~-----------gaE~TG~~fsp 540 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVGPI-----------GCEVTGISFSP 540 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE----EEEEECCT-----------TCEEEEEEECT
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeE----EEEEeCCC-----------CccCcCeeECC
Confidence 34678999998 655543322 1344455555543 11122221 16799999999
Q ss_pred CCCEEEEe
Q 012535 352 NGRHILSR 359 (461)
Q Consensus 352 ~g~~l~s~ 359 (461)
|++.|+..
T Consensus 541 Dg~tlfvn 548 (592)
T 3zwu_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99888764
No 356
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=50.91 E-value=1.1e+02 Score=25.82 Aligned_cols=64 Identities=3% Similarity=0.127 Sum_probs=34.1
Q ss_pred CCCEEEEe-C-C-----CeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCC-----eEEEEE
Q 012535 244 DGETFISA-D-D-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLID 311 (461)
Q Consensus 244 ~~~~l~~~-~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~iwd 311 (461)
++++++.| . + ..+.+||..+.. ..... .+.........+.+ ++ ++++.|+.++ .+.+||
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELA----PMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECC----CCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECC----CCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEE
Confidence 55566665 3 2 468888887442 21111 11111111122222 44 7888888765 588899
Q ss_pred CCCcc
Q 012535 312 MRQSA 316 (461)
Q Consensus 312 ~~~~~ 316 (461)
+.+.+
T Consensus 219 ~~~~~ 223 (315)
T 4asc_A 219 ITDNK 223 (315)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 87764
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.53 E-value=1e+02 Score=29.14 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=36.7
Q ss_pred cceeEEEEccCCCEEEEecC-------------CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 342 ASISDIKFARNGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
+....|.|+++|.+.++.+. +.+..++..+ ++....+.+.... .+..++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 56788999999988774221 1455555543 4444434332211 124899999
Q ss_pred CCCEEEEe
Q 012535 409 DGGRVATG 416 (461)
Q Consensus 409 ~~~~l~s~ 416 (461)
|++.|.++
T Consensus 541 D~ktLfV~ 548 (592)
T 4a9v_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99987764
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.83 E-value=87 Score=29.83 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=37.2
Q ss_pred cceeEEEEccCCCEEEEecC-------------CeEEEEEccCCCCCeeEEeeccCccccccccccCCCccceeeEEEec
Q 012535 342 ASISDIKFARNGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (461)
Q Consensus 342 ~~v~~l~~s~~g~~l~s~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (461)
...-.|+|+|.|.++++-+. +.+.+.+..+ ++....+.++.+. .++.++|+|
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~ga--------------E~TG~~fsp 540 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCc--------------cCcCeeECC
Confidence 34577999999997766321 2344444443 4554445544332 236899999
Q ss_pred CCCEEEEe
Q 012535 409 DGGRVATG 416 (461)
Q Consensus 409 ~~~~l~s~ 416 (461)
|++.|...
T Consensus 541 Dg~tlfvn 548 (592)
T 3zwu_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99987664
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.20 E-value=93 Score=29.44 Aligned_cols=61 Identities=7% Similarity=0.161 Sum_probs=37.0
Q ss_pred cceEEEEEeCCCCCeEEEEec------------CCeEEEEECCCcccccccccccccccCCCccccccccccceeEEEEc
Q 012535 283 EVITSAEFHPTHCNMLAYSSS------------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (461)
Q Consensus 283 ~~v~~v~~~p~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 350 (461)
.....|+|.++| .+.+.... ...+..++..++++ ...+.... ...++.++|+
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel----~~fl~~P~-----------~aEpnGiafS 539 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVGPI-----------GCEVTGISFS 539 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE----EEEEECCT-----------TCEEEEEEEC
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeE----EEEEeCCC-----------CccccCCEEC
Confidence 456789999998 55552211 12455566655553 11111111 1468999999
Q ss_pred cCCCEEEEe
Q 012535 351 RNGRHILSR 359 (461)
Q Consensus 351 ~~g~~l~s~ 359 (461)
||++.|+.+
T Consensus 540 PD~ktLfV~ 548 (592)
T 4a9v_A 540 PDQKTLFVG 548 (592)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998875
No 360
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=33.61 E-value=2.2e+02 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=16.1
Q ss_pred CCCEEEEecCC-----CeEEEEecCCCC
Q 012535 409 DGGRVATGSYS-----NLFRVFGCSEGS 431 (461)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iw~~~~~~ 431 (461)
++++++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 67777777643 357789988764
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=32.92 E-value=2.2e+02 Score=23.84 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=55.7
Q ss_pred ceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC
Q 012535 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (461)
.|..++....... +.. +|.|..|-.....+.-. .......|..++..... .++ -. ||.|..|-...
T Consensus 103 ~v~~ia~G~~hs~-al~-~G~v~~wG~n~~gqlg~--------~~~~~~~i~~i~~G~~~--~~~-l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 103 GVDAIAAGAWASY-ALK-DGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVYT--ALA-VK-NGGVIAWGDNY 168 (282)
T ss_dssp SEEEEEEETTEEE-EEE-TTEEEEEECCTTSTTSC--------CGGGGSSEEEEEECSSE--EEE-EE-TTEEEEEECCT
T ss_pred CeEEEECcCCEEE-EEe-CCeEEEecCCCCCcCCC--------CccCCCCeEEEEcccCE--EEE-EE-CCEEEEecCCC
Confidence 3444544433333 333 78888886654333210 00123456777665442 333 23 79999997654
Q ss_pred cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccCCC
Q 012535 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS 373 (461)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~~~ 373 (461)
...+. .+.. ....|..++...+. .++. .+|.|+.|-....+
T Consensus 169 ~gqlg-----~p~~-----------~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 169 FGQTT-----VPAE-----------AQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYK 209 (282)
T ss_dssp TSTTS-----CCGG-----------GGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTS
T ss_pred CCCCC-----Ccee-----------cCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCC
Confidence 32211 0000 01357777765443 3444 68999999876533
No 362
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=32.09 E-value=3.6e+02 Score=26.19 Aligned_cols=160 Identities=8% Similarity=0.047 Sum_probs=76.6
Q ss_pred CCCCEEEEe-CC----CeEEEEEccCCCCceeee-ccCCCCCCCCCcceEEEEEeC-CCCCeEEEEecCC------eEEE
Q 012535 243 SDGETFISA-DD----LRINLWNLEISNQSFNIV-DVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKG------SIRL 309 (461)
Q Consensus 243 ~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg------~i~i 309 (461)
.++.+++.| .+ ..+.+||..+..-. .+. ......+...... .+++..+ ++ ++++.|+.++ .+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~-~~~~~~p~~~~p~~R~~-hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKID-MKNIEVSSSEVPVARMC-HTFTTISRNN-QLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEE-EEECCCCCSCCCCCCBS-CEEEEETTTT-EEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEE-EeccCCCCCCCCccccc-eEEEEEccCC-EEEEEcCCCCCCCccccEEE
Confidence 355666665 32 45778887754321 111 0000011111122 2333343 55 7888887643 5788
Q ss_pred EECCCcccccccccccccccCCCccccccccccceeEEEEccCCCEEEEec-C--CeEEEEEccCCCCCeeEEeeccCcc
Q 012535 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--MTLKLWDINMDSGPVATFQVHEHLR 386 (461)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~-d--~~i~vwd~~~~~~~~~~~~~~~~~~ 386 (461)
||..+..- ..+..+... ..-.+++.-.+++.++.|+ + +.+.+||..+ .....+.......
T Consensus 473 yd~~t~~W--~~~~~~p~~-------------R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t--~~W~~~~~~g~~p 535 (695)
T 2zwa_A 473 FDMKTREW--SMIKSLSHT-------------RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE--EIFKDVTPKDEFF 535 (695)
T ss_dssp EETTTTEE--EECCCCSBC-------------CBSCEEEECTTSCEEEECCBCSSCSEEEEETTT--TEEEECCCSSGGG
T ss_pred EeCCCCcE--EECCCCCCC-------------cccceEEEEcCCEEEEECCCCCCCCEEEEECCC--CceEEccCCCCCC
Confidence 88877532 112111111 1112222323677777764 3 3789999875 2222222110000
Q ss_pred ccccccccCCCccceeeEEEecC-CCEEEEecC--C-----CeEEEEecCCCC
Q 012535 387 PKLCDLYENDSIFDKFECCLSGD-GGRVATGSY--S-----NLFRVFGCSEGS 431 (461)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~--d-----g~i~iw~~~~~~ 431 (461)
. . ......+.+..+ +++++.||. + +.+.+||+.+.+
T Consensus 536 ~--~-------r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 536 Q--N-------SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp G--S-------CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred C--c-------ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 0 0 000013555655 677777775 2 468999998876
No 363
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.64 E-value=1.4e+02 Score=20.67 Aligned_cols=25 Identities=8% Similarity=0.291 Sum_probs=14.4
Q ss_pred eEEEEccCCCEEEEecCCeEEEEEc
Q 012535 345 SDIKFARNGRHILSRDYMTLKLWDI 369 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~d~~i~vwd~ 369 (461)
..+.+..+|.+++...++...+|..
T Consensus 52 ~~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 52 CTLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp CEEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEEcCCCcEEEEeCCCCEEEEEe
Confidence 3466667777766644444446643
No 364
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=27.12 E-value=1.6e+02 Score=20.47 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=17.0
Q ss_pred eEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 345 SDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 345 ~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
..+.+..+|.+++...++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 45677778888776544444 787654
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=23.51 E-value=3.2e+02 Score=22.75 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=52.0
Q ss_pred ceeeEEeCCCCCEEEEeCCCeEEEEEccCCCCceeeeccCCCCCCCCCcceEEEEEeCCCCCeEEEEecCCeEEEEECCC
Q 012535 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (461)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (461)
.|..++...... ++.. ||.|..|-.....+.-. | . .....|..++..... .++. . ||.|..|-...
T Consensus 25 ~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~-----p--~-~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTM-----P--A-ATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSC-----C--G-GGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCC-----C--c-cCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCC
Confidence 455555443322 2223 78888887654433210 0 0 112356677766543 3343 4 88888887654
Q ss_pred cccccccccccccccCCCccccccccccceeEEEEccCCCEEEEecCCeEEEEEccC
Q 012535 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (461)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s~~d~~i~vwd~~~ 371 (461)
...+..+.. + ...|..++...+- .++.. +|.|+.|-...
T Consensus 91 ~Gqlg~P~~-~---------------~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 91 DGQTTVPAE-A---------------RSGVDAIAAGAWA-SYALK-DGKVIAWGDDS 129 (282)
T ss_dssp TSTTCCCGG-G---------------SSSEEEEEEETTE-EEEEE-TTEEEEEECCT
T ss_pred CCCCCCCcc-c---------------CCCeEEEECcCCE-EEEEe-CCeEEEecCCC
Confidence 322110000 0 1346666665433 23334 77788877654
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=20.08 E-value=6.2e+02 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=21.2
Q ss_pred eeEE-eCCCCCEEEEe------CCCeEEEEEccCCCC
Q 012535 237 NSIS-NNSDGETFISA------DDLRINLWNLEISNQ 266 (461)
Q Consensus 237 ~~i~-~~~~~~~l~~~------~d~~i~iwd~~~~~~ 266 (461)
..+. ++|+++.++.+ +-..++++|+.+++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~ 168 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDF 168 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCc
Confidence 3444 88999888764 235789999986643
Done!