BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012537
         (461 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5UQF0|YL484_MIMIV Putative ankyrin repeat protein L484 OS=Acanthamoeba polyphaga
            mimivirus GN=MIMI_L484 PE=1 SV=1
          Length = 1908

 Score = 34.7 bits (78), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 71   IDFSDHHPSTARLHRHSHRRRQLLHLTRVGTLGDDFFSGDDFDRSLYDPQ-FRRPLNGTP 129
            ID   +H +      ++H   QL++ T   T G++  +   F+R+L   Q F   L+  P
Sbjct: 987  IDIIKYHNNVIEF-LNTHSASQLINATNTAT-GNNITTTRVFNRNLIPIQIFPSTLSDNP 1044

Query: 130  -------VALSYSYTNVGFSSQIVDNG---IEVLKIVHSGVAFKTTGSFDRGEVDSDRDG 179
                   V  SYS   + + +   DN    I++  I  +   +  T SFDR  + S+   
Sbjct: 1045 NFTEIETVLRSYSIPEITYYADATDNTDILIDIFDIGSTLNLYHGTISFDRTGIISNSPN 1104

Query: 180  AVDNEQNNDKDNG 192
              DN Q N +++G
Sbjct: 1105 VTDNLQINIENDG 1117


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.141    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,604,367
Number of Sequences: 539616
Number of extensions: 6872366
Number of successful extensions: 27510
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27509
Number of HSP's gapped (non-prelim): 2
length of query: 461
length of database: 191,569,459
effective HSP length: 121
effective length of query: 340
effective length of database: 126,275,923
effective search space: 42933813820
effective search space used: 42933813820
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)