Query 012537
Match_columns 461
No_of_seqs 15 out of 17
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 11:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012537.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012537hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qmga1 a.100.1.2 (A:308-595) 18.8 47 0.0034 30.2 4.2 35 372-406 73-111 (288)
2 d1ofcx1 a.4.1.3 (X:799-850) SA 10.6 35 0.0026 24.1 0.7 21 198-218 4-25 (52)
3 d1nn7a_ d.42.1.2 (A:) Potassiu 9.5 37 0.0027 25.7 0.5 8 57-64 43-50 (105)
4 d3kvta_ d.42.1.2 (A:) akv3.1 v 7.8 48 0.0035 24.9 0.5 13 57-69 46-59 (103)
5 d3b45a1 f.51.1.1 (A:91-270) Gl 7.1 85 0.0062 24.4 1.7 40 274-313 45-85 (180)
6 d1t1da_ d.42.1.2 (A:) Shaker p 6.9 56 0.0041 24.5 0.5 15 56-70 44-59 (100)
7 d1w1we_ a.4.5.57 (E:) Sister c 6.4 1.1E+02 0.008 22.8 2.0 19 209-227 36-54 (79)
8 d1q90g_ f.23.26.1 (G:) PetG su 6.2 2E+02 0.014 18.4 2.8 27 392-418 2-28 (30)
9 d1ebda1 c.3.1.5 (A:7-154,A:272 6.0 2.9E+02 0.021 20.4 4.4 35 359-393 29-63 (223)
10 d2fbqa2 a.121.1.1 (A:81-214) T 5.2 5.7E+02 0.041 19.0 5.7 75 386-460 29-119 (134)
No 1
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=18.80 E-value=47 Score=30.19 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=27.5
Q ss_pred HhhhhHHHHhhhhhH---HHHHHHHHHhhcchhH-HHHH
Q 012537 372 VKEGCYLISTMMNQA---IQIKCLEAILCGSFTR-WALA 406 (461)
Q Consensus 372 vkeGcyLvS~M~~qA---~~iKc~EsilCGs~~R-w~l~ 406 (461)
=|.|+.-.+.-+.+. +.-||+|.|.+|+.+| |+++
T Consensus 73 ak~~~~~~~~~~~~~~kpvf~e~yddV~SG~eak~vi~a 111 (288)
T d1qmga1 73 GKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLA 111 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHc
Confidence 355666666666666 7789999999999997 7776
No 2
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=10.59 E-value=35 Score=24.09 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=15.2
Q ss_pred hhhhhhhhccccc-cccchHHH
Q 012537 198 IVDLQLFIKGLEL-GGRDAAAL 218 (461)
Q Consensus 198 ~vd~~~f~kglel-~rRDaaAl 218 (461)
.-|||-||+|++. ||.|...|
T Consensus 4 rrdF~~Fi~a~ekyGR~d~~~I 25 (52)
T d1ofcx1 4 KRDFNQFIKANEKYGRDDIDNI 25 (52)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 3489999999987 55565544
No 3
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.46 E-value=37 Score=25.68 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=7.3
Q ss_pred eccCCccH
Q 012537 57 FIDRDASL 64 (461)
Q Consensus 57 FiDrDPsL 64 (461)
|+||||.+
T Consensus 43 FiDRdp~~ 50 (105)
T d1nn7a_ 43 FFDRDPDI 50 (105)
T ss_dssp EECSCTTT
T ss_pred EEeCCHHH
Confidence 99999986
No 4
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=7.78 E-value=48 Score=24.86 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=9.2
Q ss_pred eccCCccH-HHhhh
Q 012537 57 FIDRDASL-KSLLS 69 (461)
Q Consensus 57 FiDrDPsL-rSLLs 69 (461)
||||||.+ +.+|.
T Consensus 46 fiDRdp~~F~~IL~ 59 (103)
T d3kvta_ 46 FFDRHPGVFAQIIN 59 (103)
T ss_dssp EECSCTTTHHHHHH
T ss_pred EecCCHHHHHHHHH
Confidence 89999986 33443
No 5
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=7.07 E-value=85 Score=24.36 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=33.9
Q ss_pred hhhhhhhHhHHHHHHHHHHHHhhhhhhh-ccchhhhHHhhh
Q 012537 274 LKRLTGFILMRWAVRDALTQLLGLWFFG-EIEDQYSFFKLF 313 (461)
Q Consensus 274 ~kRLtgf~llrwa~RDa~tqll~lwffg-eiedq~s~frLf 313 (461)
.-|+.--.++|--.=..+-+|+++|++| .+|.+..-.|..
T Consensus 45 ~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~ 85 (180)
T d3b45a1 45 FWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLI 85 (180)
T ss_dssp GGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhhe
Confidence 4588889999999999999999999997 899987766543
No 6
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=6.93 E-value=56 Score=24.53 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=10.3
Q ss_pred eeccCCccH-HHhhhc
Q 012537 56 SFIDRDASL-KSLLSR 70 (461)
Q Consensus 56 SFiDrDPsL-rSLLsR 70 (461)
=||||||.+ +.+|.=
T Consensus 44 ~FiDRdp~~F~~IL~f 59 (100)
T d1t1da_ 44 YFFDRNRPSFDAILYF 59 (100)
T ss_dssp EEECSCSTTHHHHHHH
T ss_pred EEEecCHHHHHHHHHH
Confidence 389999986 444443
No 7
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.43 E-value=1.1e+02 Score=22.85 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=14.1
Q ss_pred cccccchHHHHHHHHHHHH
Q 012537 209 ELGGRDAAALFFLVSFLSA 227 (461)
Q Consensus 209 el~rRDaaAl~fLls~LS~ 227 (461)
..+|++||..||-+-+|+.
T Consensus 36 ~~tR~~Aa~~Fy~~LvL~t 54 (79)
T d1w1we_ 36 NITKREASRGFFDILSLAT 54 (79)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc
Confidence 4689999999998888764
No 8
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.22 E-value=2e+02 Score=18.42 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=19.3
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHH
Q 012537 392 LEAILCGSFTRWALARVVGKSFAAMLQ 418 (461)
Q Consensus 392 ~EsilCGs~~Rw~l~~~~Gk~la~~l~ 418 (461)
.|..+||-.--.+=.+..|-|.++.+|
T Consensus 2 vE~ll~GivlGlipiTl~Glfv~AylQ 28 (30)
T d1q90g_ 2 VEPLLCGIVLGLVPVTIAGLFVTAYLQ 28 (30)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhHHHhhHHHHHHHHHHHHHHH
Confidence 377788877667777777777776665
No 9
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.04 E-value=2.9e+02 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=27.4
Q ss_pred EEEecCCCchhHHHhhhhHHHHhhhhhHHHHHHHH
Q 012537 359 IAIVDPRKTGREIVKEGCYLISTMMNQAIQIKCLE 393 (461)
Q Consensus 359 V~i~d~r~~Gre~vkeGcyLvS~M~~qA~~iKc~E 393 (461)
|+|+|....|-..+.+||.....|...+......|
T Consensus 29 V~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~ 63 (223)
T d1ebda1 29 VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAK 63 (223)
T ss_dssp EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcceeccccccccccccccchhhhhh
Confidence 78999888888899999988777777666555443
No 10
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.17 E-value=5.7e+02 Score=18.98 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhccccccCCcchh
Q 012537 386 AIQIKCLEAILCGSFT--RWALARVVGKSFAAMLQSVAE-------------VYFMVAWLIFFFVTRCREANLEGRRFGR 450 (461)
Q Consensus 386 A~~iKc~EsilCGs~~--Rw~l~~~~Gk~la~~l~S~~E-------------vYFmV~WLiFYf~ARcke~~~~grrFG~ 450 (461)
+.-+|.+--...-... |+++.+.++++...++.-+.+ ..|||.=+++|++.+=.-..+.+..++.
T Consensus 29 ~~f~rLl~R~~~ep~~~lr~~~~~~~~p~~~rf~~al~~alP~l~~~el~wr~~f~vga~~~~l~~~~~~~~l~~~~~~~ 108 (134)
T d2fbqa2 29 SIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNEAAPKLPPIELFWRVHFMLGAAAFSMSGIKALRAMAETDFGV 108 (134)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcchHHHHhcccccCC
Q ss_pred H-hHHHhhhhc
Q 012537 451 R-DLEGLIERN 460 (461)
Q Consensus 451 r-ele~lidg~ 460 (461)
. ++|.+++.+
T Consensus 109 ~~d~e~~~~~L 119 (134)
T d2fbqa2 109 NTSTEQVMHLM 119 (134)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Done!