BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012538
         (461 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 175 EDVVTGLTIQCRGWKSMYFKPNKPAFLGVAPVTLDIALVQMKRWSEGMFQIFLSKYCPFI 234
           ED  T L I  RGWKS+Y   ++    G+ P T    + Q  RW+ GM Q+ L K   F 
Sbjct: 342 EDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQMLLLKNPLFR 399

Query: 235 YGHGKIKFGAQMGYCNYLLWAPLSLPTLFYVIVPPLCLGHGISLFPKV--SSLWFIP--F 290
            G G      ++ Y N + +    L  + +++ P + L  GI +F       L ++P   
Sbjct: 400 RGLG---IAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYL 456

Query: 291 AYVFVAQNA 299
           A  F+ QNA
Sbjct: 457 AVSFLVQNA 465


>pdb|2Q18|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase
 pdb|2Q19|X Chain X, 2-keto-3-deoxy-d-arabinonate Dehydratase Apo Form
 pdb|2Q1A|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
           Magnesium And 2-Oxobutyrate
 pdb|2Q1C|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
           Calcium And 2- Oxobutyrate
 pdb|2Q1D|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
           Magnesium And 2,5-Dioxopentanoate
 pdb|3BQB|A Chain A, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
 pdb|3BQB|X Chain X, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
 pdb|3BQB|Z Chain Z, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
 pdb|3BQB|Y Chain Y, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
          Length = 293

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 260 PTLFYVIVPPLCLGHGISLFPKVSSLWFIPFAYVFVAQNA------YSICEALSC 308
           P +F+   P  C+GHG ++  +  S W +P   + V  ++      Y+I + +S 
Sbjct: 113 PEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSA 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,511,275
Number of Sequences: 62578
Number of extensions: 484770
Number of successful extensions: 1602
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 6
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)