BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012539
         (461 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/461 (79%), Positives = 411/461 (89%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAELG L  C +VF  I EPD+VCQTAM+SACAK GDV  ARK+FD+M  +DPIAWNAM
Sbjct: 155 MYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAM 214

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY QCG+SREAL LF+LMQ   VK+NEVSMVSVLSAC+HLGALDQGRWAH YIERN+L
Sbjct: 215 ISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKL 274

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +MT+TLGTAL+DMY+KCGNMNKAM+ FWGMKE+NVYTW+S IGGLAMNGAGEK LELFSL
Sbjct: 275 RMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSL 334

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MKQ  V+PNE+TFVSVLRGC VVGLVEEGR+HF+SM + YGIEP LEHYGC+VDLYGRAG
Sbjct: 335 MKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAG 394

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            LDEAL+ IN MP++PH GAWGALLNAC++Y+N EMGELASRK+VELE KNHGAYVLLSN
Sbjct: 395 HLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSN 454

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+SK+WDRV NVRQ M  KGV+K PGCSVIEV  EVHEFF GD++HPRY EI+VMLGE
Sbjct: 455 IYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGE 514

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ISRRLKL+GYVANTNPV +DIEEEEKED LC HSEK+AIAFGLISL   VPIRIVKNLRV
Sbjct: 515 ISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRV 574

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CWDCHD TKMISK FNREI+VRDRNRFHHF++G+CSCKGYW
Sbjct: 575 CWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/461 (73%), Positives = 407/461 (88%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAE+ CL  C +VF+ + +PD+VCQT M+SACAKCGD+  AR +FD MP+RD ++WNAM
Sbjct: 154 MYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAM 213

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ G+SREAL+LF LMQ+  VK+NEVSM+SV++ACTHLGALDQG+WAH YIE+N++
Sbjct: 214 IAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKI 273

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +MTV LGTALVDMY KCGN+++A+  FW M E+NVYTW++ IGGLAMNG G+K LELFS 
Sbjct: 274 QMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSF 333

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK  G+ PNE+TF+SVL+GC VVG V+EGR HFDSM+R++GIEP LEHYGC+VDLYGRAG
Sbjct: 334 MKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAG 393

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL+EAL+ IN MP+KPHAGAWGALLNACRMYKN E+GE ASRKL+E+E KNHGAYV LSN
Sbjct: 394 RLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSN 453

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA++ NWDRV NVRQ MKA+G+ KLPGCSV+EV+ EVHEFF+GD++HP Y+ IE M GE
Sbjct: 454 IYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGE 513

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           IS+RLKLAGYVA+TN V++DIEEEEKED LCKHSEK+AIAFGL SLKEG+PIRIVKNLR+
Sbjct: 514 ISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRI 573

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CWDCHDV+KMISK+F REIIVRDRNRFHHFK+G+CSCK +W
Sbjct: 574 CWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/461 (75%), Positives = 402/461 (87%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAELGCL  C  VFDG  EPD+V QTAM++ACAKCGD+D ARKMFDEMPERD + WNAM
Sbjct: 156 MYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAM 215

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQCG+SREAL +FHLMQ+  VKLNEVSMV VLSACTHL  LD GRW H Y+ER ++
Sbjct: 216 IAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKV 275

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +MTVTLGTALVDMY+KCGN+++AM  FWGMKERNVYTW+S IGGLAMNG GE+SL+LF+ 
Sbjct: 276 RMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFND 335

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+ GV+PN +TF+SVL+GC VVGLVEEGR+HFDSMR  YGI P LEHYG +VD+YGRAG
Sbjct: 336 MKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAG 395

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL EAL+ IN MPM+PH GAW ALL+ACRMYKN E+GE+A RK+VELE KN GAYVLLSN
Sbjct: 396 RLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSN 455

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+ KNW+ V ++RQ MKAKGVKKLPGCSVIEVD EVHEF  GD++HPRY+EIE+ L E
Sbjct: 456 IYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEE 515

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           IS+ L+L+GYVANTNPV++DIEEEEKED L KHSEKVAIAFGLISLK  VPIR+V NLR+
Sbjct: 516 ISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRI 575

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CWDCH+V KMISK+FNREIIVRDRNRFHHFK+G+CSCK YW
Sbjct: 576 CWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/461 (71%), Positives = 396/461 (85%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YAELGCL  C KVF+ I  PD VC+TAM++ACA+CGDV  ARK+F+ MPERDPIAWNAM
Sbjct: 152 LYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAM 211

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ G+SREAL++FHLMQ+  VK+N V+M+SVLSACT LGALDQGRWAH YIERN++
Sbjct: 212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKI 271

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K+TV L T LVD+Y+KCG+M KAM+ FWGM+E+NVYTW+S + GLAMNG GEK LELFSL
Sbjct: 272 KITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MKQ GV PN VTFVSVLRGC VVG V+EG+ HFDSMR E+GIEP LEHYGCLVDLY RAG
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL++A+ +I +MPMKPHA  W +LL+A RMYKN E+G LAS+K++ELET NHGAYVLLSN
Sbjct: 392 RLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSN 451

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+S +WD V +VRQ MK+KGV+K PGCSV+EV+ EVHEFF GD++HP+Y +I+ +  +
Sbjct: 452 IYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKD 511

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ISRRL+LAGY A+T PVM+DI+EEEKED LC HSEK AIAFG++SLKE VPIRIVKNLRV
Sbjct: 512 ISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRV 571

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V+ MISK+FNREIIVRDRNRFHHFK+G CSC G+W
Sbjct: 572 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/454 (71%), Positives = 393/454 (86%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YAELGCL  C KVF+ +  PD VC+TAM++ACA+CGDV  ARK+F+ MPE+DPIAWNAM
Sbjct: 160 LYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAM 219

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ G+SREAL+LFHLMQ+  VK+N VSM+SVLSACT LGALDQGRWAH YIERN++
Sbjct: 220 ISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKI 279

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K+TV LGT LVD+Y+KCG+M+KAM+ FWGM+E+NVYTW+S + GLAMNG GEK L+LFSL
Sbjct: 280 KITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSL 339

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MKQ GV PN VTFVSVLRGC VVG V+EG++HFDSMR E+GIEP L+HYGCLVDLY RAG
Sbjct: 340 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAG 399

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL++A+ +I +MPMK HA  W +LL+A RMYKN E+G LAS+K++ELET NHGAYVLLSN
Sbjct: 400 RLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSN 459

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+S +WD V +VRQ MK+KGV+K PGCSV+EV+ EVHEFF GD++HP+YNEI+ +  +
Sbjct: 460 IYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKD 519

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ISRRL+LAGY A+T PVM+DI+EEEKED LC HSEK AIAFG++SLK  VPIRIVKNLRV
Sbjct: 520 ISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRV 579

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGK 454
           C DCH V+ MISK+FNREIIVRDRNRFHHFK+G+
Sbjct: 580 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGR 613



 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 168/441 (38%), Positives = 271/441 (61%), Gaps = 1/441 (0%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            +V    A+++   K GD+  + K+F+++  ++ ++WN M+  + Q G + E L  F++ +
Sbjct: 671  EVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSR 730

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +K ++ + ++VL  C  +G +   +  H  I          + TAL+D+Y+K G + 
Sbjct: 731  WVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLE 790

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             +   F  +   +   WT+++   A +G G  +++ F LM   G+ P+ VTF  +L  C 
Sbjct: 791  DSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACS 850

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GLVEEGR +F++M + Y IEP L+HY C+VDL GR+G L +A  +I +MPM+P +G W
Sbjct: 851  HSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVW 910

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            GALL ACR+YK+T++G  A+++L ELE ++   Y++LSNIY+ S  W     +R +MK K
Sbjct: 911  GALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQK 970

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA-GYVANTNPVMYD 380
            G+ +  G S IE   ++H+F  GD +HP   +I+  L EI +++K   G+ + T  V++D
Sbjct: 971  GLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHD 1030

Query: 381  IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            ++E+ KE+ + +HSEK+A+AFGL+ +    PI I KNLR+C DCH+  K IS +  R II
Sbjct: 1031 VDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRII 1090

Query: 441  VRDRNRFHHFKEGKCSCKGYW 461
            +RD  RFHHF EG CSC+ YW
Sbjct: 1091 IRDSKRFHHFLEGSCSCRDYW 1111



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 122/249 (48%), Gaps = 23/249 (9%)

Query: 30  ISACAKCGDVDLA-RKMFD-EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           +  C  C  V +   K+F+ E+  RD   ++    G    GK  E L      ++   + 
Sbjct: 577 LRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGRGYLGKCFEVLSRMMRSEV-GFRP 635

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           NEV+ +S++SAC H G  ++G   H  + ++ +   V +  AL+++Y K G++  +   F
Sbjct: 636 NEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLF 695

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +  +N+ +W ++I     NG  E+ L  F++ +  G++P++ TF++VLR C  +G+V 
Sbjct: 696 EDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV- 754

Query: 208 EGREHFDSMRREYGIEPWLEHYG---------CLVDLYGRAGRLDEALDVINKMPMKPHA 258
                    R   GI   +   G          L+DLY + GRL+++  V  ++   P +
Sbjct: 755 ---------RLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT-SPDS 804

Query: 259 GAWGALLNA 267
            AW A+L A
Sbjct: 805 MAWTAMLAA 813


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 287/461 (62%), Positives = 359/461 (77%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA +G +G  +  F  I  PDVVC TAM+ A +  GDVD AR++FD MP+RD +AWNAM
Sbjct: 168 MYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAM 227

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L GY + G+SREAL LF  MQ   V ++EV++VSVL+AC  +GAL++G W H Y+    +
Sbjct: 228 LTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGM 287

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +++VTLGTALVDMYSKCG +  +M+ F  M+ERN+YTWTS + GLAMNG GE+ LELF  
Sbjct: 288 RVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKR 347

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ AG+ PN VTFV+VLRGC V GLVEEGR  FDSM+ ++ +EPWLEHYGC+VDLYGRAG
Sbjct: 348 MESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAG 407

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RLD+A+D IN MP++PH G WGALLNA R++ N ++G+ A  KL E+E+KN  A+VLLSN
Sbjct: 408 RLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSN 467

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAES NW  V  VR +MK+KGVKK+PGCS IEVD +VHEFF G ++HPRY +I+ ML E
Sbjct: 468 IYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAE 527

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +S RL+L GY ANT  V++DIEEEEKE  +  HSEK+A+AFGLI+L E   IRIVKNLRV
Sbjct: 528 MSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRV 587

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCHD TK+ISKVF+REI++RDRNRFHHFK G CSC+ YW
Sbjct: 588 CKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/461 (61%), Positives = 355/461 (77%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +G  +  F  I  PDVVC TAM+ A A  G+ D AR++FD MP+RD +AWNAM
Sbjct: 239 MYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAM 298

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY   G+SREAL LF  M+     + EV++VS L+AC  LGAL++G+W H       +
Sbjct: 299 IAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGM 358

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +++VTLGTAL+DMYSKCG +  AM+ F  M ERNVYTWTS + GLAMNG G   L LF  
Sbjct: 359 RLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR 418

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  GV PN VTFV VLRGC + GLV+EGR  FDSM+  +GI+PWLEHYGC+VDLYGRAG
Sbjct: 419 MESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAG 478

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RLD+A++ IN MP++PH G WGALLNA R++KN E+G+ A  KL+ +E+KN  A+VLLSN
Sbjct: 479 RLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSN 538

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+S+NW  V NVR +MKAKGVKK+PGCS IEV  +VHEFF G +THPR+ EIE+ML E
Sbjct: 539 IYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAE 598

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++RL+L GY+ANT  V++DIEEE+KED +  HSEK+AIAFGL++L E + IRIVKNLRV
Sbjct: 599 MNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRV 658

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCHD TKMISKVFNREI++RDRNRFHHFK+G CSCK YW
Sbjct: 659 CEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/461 (61%), Positives = 355/461 (77%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +G  +  F  I  PDVVC TAM+ A A  G+ D AR++FD MP+RD +AWNAM
Sbjct: 246 MYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAM 305

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY   G+SREAL LF  M+     + EV++VS L+AC  LGAL++G+W H       +
Sbjct: 306 IAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGM 365

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +++VTLGTAL+DMYSKCG +  AM+ F  M ERNVYTWTS + GLAMNG G   L LF  
Sbjct: 366 RLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR 425

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  GV PN VTFV VLRGC + GLV+EGR  FDSM+  +GI+PWLEHYGC+VDLYGRAG
Sbjct: 426 MESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAG 485

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RLD+A++ IN MP++PH G WGALLNA R++KN E+G+ A  KL+ +E+KN  A+VLLSN
Sbjct: 486 RLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSN 545

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+S+NW  V NVR +MKAKGVKK+PGCS IEV  +VHEFF G +THPR+ EIE+ML E
Sbjct: 546 IYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAE 605

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++RL+L GY+ANT  V++DIEEE+KED +  HSEK+AIAFGL++L E + IRIVKNLRV
Sbjct: 606 MNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRV 665

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCHD TKMISKVFNREI++RDRNRFHHFK+G CSCK YW
Sbjct: 666 CEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/461 (61%), Positives = 355/461 (77%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +G  +  F  I  PDVVC TAM+ A A  G+ D AR++FD MP+RD +AWNAM
Sbjct: 246 MYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAM 305

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY   G+SREAL LF  M+     + EV++VS L+AC  LGAL++G+W H       +
Sbjct: 306 IAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGM 365

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +++VTLGTAL+DMYSKCG +  AM+ F  M ERNVYTWTS + GLAMNG G   L LF  
Sbjct: 366 RLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR 425

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  GV PN VTFV VLRGC + GLV+EGR  FDSM+  +GI+PWLEHYGC+VDLYGRAG
Sbjct: 426 MESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAG 485

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RLD+A++ IN MP++PH G WGALLNA R++KN E+G+ A  KL+ +E+KN  A+VLLSN
Sbjct: 486 RLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSN 545

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+S+NW  V NVR +MKAKGVKK+PGCS IEV  +VHEFF G +THPR+ EIE+ML E
Sbjct: 546 IYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAE 605

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++RL+L GY+ANT  V++DIEEE+KED +  HSEK+AIAFGL++L E + IRIVKNLRV
Sbjct: 606 MNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRV 665

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCHD TKMISKVFNREI++RDRNRFHHFK+G CSCK YW
Sbjct: 666 CEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/461 (60%), Positives = 348/461 (75%), Gaps = 1/461 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA LG +   +  F  I  PDVVC TAM++A A  GDVD AR +FD MP+RD +AW+AM
Sbjct: 158 MYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAM 217

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY   G+SREAL LF  M      + E ++VSVL+AC  +G LD+G+W H Y+    +
Sbjct: 218 IAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGM 277

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +M++ LGTALVDMYSKCG +  AM+ F  M ERNVYTWTS + GLAMNG G + L+LF  
Sbjct: 278 QMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKR 337

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ AG++PN V+FV+VLRGC + GLV+EGR  FDSM + YG++PW EHYGC+VDLYGRAG
Sbjct: 338 MEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAG 396

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RLD+A+  IN MPM+PH G WGALLNA R++ + ++G+ A  KL+ +E++N  A+V LSN
Sbjct: 397 RLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSN 456

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAES+NW  V  VR +MKAKGVKK+PG S IEVD +VHEF+ G   HPRYNEIE+ML E
Sbjct: 457 IYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAE 516

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + RRL+L GY ANT  V++DIEEEEKE  +  HSEK+A+AFGLI L E V IRIVKNLRV
Sbjct: 517 MDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRV 576

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SKVFNREI++RDRNRFHHFK G+CSC+ YW
Sbjct: 577 CMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/461 (60%), Positives = 348/461 (75%), Gaps = 1/461 (0%)

Query: 1    MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            MYA LG +   +  F  I  PDVVC TAM++A A  GDVD AR +FD MP+RD +AW+AM
Sbjct: 1363 MYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAM 1422

Query: 61   LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
            +AGY   G+SREAL LF  M      + E ++VSVL+AC  +G LD+G+W H Y+    +
Sbjct: 1423 IAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGM 1482

Query: 121  KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            +M++ LGTALVDMYSKCG +  AM+ F  M ERNVYTWTS + GLAMNG G + L+LF  
Sbjct: 1483 QMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKR 1542

Query: 181  MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
            M+ AG++PN V+FV+VLRGC + GLV+EGR  FDSM + YG++PW EHYGC+VDLYGRAG
Sbjct: 1543 MEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAG 1601

Query: 241  RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            RLD+A+  IN MPM+PH G WGALLNA R++ + ++G+ A  KL+ +E++N  A+V LSN
Sbjct: 1602 RLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSN 1661

Query: 301  IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            IYAES+NW  V  VR +MKAKGVKK+PG S IEVD +VHEF+ G   HPRYNEIE+ML E
Sbjct: 1662 IYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAE 1721

Query: 361  ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
            + RRL+L GY ANT  V++DIEEEEKE  +  HSEK+A+AFGLI L E V IRIVKNLRV
Sbjct: 1722 MDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRV 1781

Query: 421  CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            C DCH   K++SKVFNREI++RDRNRFHHFK G+CSC+ YW
Sbjct: 1782 CMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/461 (54%), Positives = 335/461 (72%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G +   QK+F+G H  D +   +MIS C KCG V+ AR +FD MPE+D ++W+A+
Sbjct: 348 MYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAV 407

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ     E L LFH MQ+  ++ +E  +VSV+SACTHL ALDQG+W H YI +N L
Sbjct: 408 ISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGL 467

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K+ V LGT L+DMY KCG +  A++ F GM+E+ V +W ++I GLA+NG  E+SL++FS 
Sbjct: 468 KVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSE 527

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK  GV PNE+TF+ VL  C  +GLV+EGR HF SM  ++GIEP ++HYGC+VDL GRAG
Sbjct: 528 MKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAG 587

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA  +I  MPM P    WGALL AC+ + +TEMGE   RKL+EL+  + G +VLLSN
Sbjct: 588 LLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSN 647

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           I+A   +W+ V+ VR +MK +GV K PGCS+IE +  VHEF AGD+THP  N++E ML E
Sbjct: 648 IFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNE 707

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++RLK+ GY  +TN V  DI+EEEKE TL +HSEK+AIAFGL+++    PIRI+KNLR+
Sbjct: 708 MAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRI 767

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+ISK + REI+VRDR+RFH+FKEG CSC  YW
Sbjct: 768 CNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 153/295 (51%), Gaps = 33/295 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   + +FD + + ++V   +MI    K G V  A K+F+EM E+D ++W+A++
Sbjct: 217 YVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALI 276

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GY Q G   EAL +F  M  + ++L+EV +VSVLSAC HL  +  G+  H  + R  ++
Sbjct: 277 SGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIE 336

Query: 122 MTVTLGTALVDMYS-------------------------------KCGNMNKAMDFFWGM 150
             V L  AL+ MYS                               KCG++ KA   F  M
Sbjct: 337 SYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVM 396

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            E+++ +W++VI G A +    ++L LF  M+   +RP+E   VSV+  C  +  +++G+
Sbjct: 397 PEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGK 456

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                +R+  G++  +     L+D+Y + G ++ AL+V N M  K    +W AL+
Sbjct: 457 WVHAYIRKN-GLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG-VSSWNALI 509



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 41/249 (16%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  Q  +I+  A CG++  ARK+FDE P  D ++WN++LAGY + G   EA  +F  
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQ 232

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M                                   +RN     +    +++ +  K G 
Sbjct: 233 MP----------------------------------QRN-----IVASNSMIVLLGKMGQ 253

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  M E+++ +W+++I G   NG  E++L +F  M   G+R +EV  VSVL  
Sbjct: 254 VMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSA 313

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  + +V+ G+     +    GIE ++     L+ +Y  +G + +A  + N         
Sbjct: 314 CAHLSIVKTGK-MIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNG-SHNLDQI 371

Query: 260 AWGALLNAC 268
           +W ++++ C
Sbjct: 372 SWNSMISGC 380


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/461 (52%), Positives = 334/461 (72%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G       +F  ++  DVV  T+MI    KCGDV+ ARK+FD+MPE++ + W+ M
Sbjct: 163 MYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTM 222

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ     +A+ LF ++Q   V+ NE  MVSV+S+C HLGAL+ G  AH Y+ +N +
Sbjct: 223 ISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGM 282

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + LGTALVDMY++CG+++KA+  F  + ER+  +WT++I GLAM+G  E+SL+ F+ 
Sbjct: 283 TLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFAT 342

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +AG+ P ++TF +VL  C   GLVE G + F+SM+R++ +EP LEHYGC+VDL GRAG
Sbjct: 343 MVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAG 402

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L+EA   + KMP+KP+A  WGALL ACR++KN E+GE   + L++L  ++ G YVLLSN
Sbjct: 403 KLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSN 462

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +K W++V  +RQ+MKAKG+KK PG S+IE+D  VH+F  GD +HP  ++IE M  E
Sbjct: 463 IYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEE 522

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  R++ AGY  NT   ++DI+EEEKE  L +HSEK+AIAFG++  + G PIRIVKNLRV
Sbjct: 523 ILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRV 582

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  TK+ISKVF RE+IVRDRNRFHHF++G CSC  YW
Sbjct: 583 CEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 37/289 (12%)

Query: 22  DVVCQTAMISACAKCGD----VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           DV   + +I+ C         +D A ++F ++   +   +NAM+ G++      +A H +
Sbjct: 48  DVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFY 107

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYIERNRLKMTVTL 126
              Q   +  + ++   ++ +CT L  +  G  AH           VY++ + + M  T 
Sbjct: 108 VQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATF 167

Query: 127 G--------------------TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           G                    T+++  ++KCG++  A   F  M E+N+ TW+++I G A
Sbjct: 168 GDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYA 227

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            N   +K++ELF +++  GVR NE   VSV+  C  +G +E G    D + +  G+   L
Sbjct: 228 QNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKN-GMTLNL 286

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
                LVD+Y R G +D+A+ V   +P +    +W AL+    M+  +E
Sbjct: 287 ILGTALVDMYARCGSIDKAVWVFEDLPERD-TLSWTALIAGLAMHGYSE 334


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/461 (53%), Positives = 321/461 (69%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+    +   QK+F      D +   +MIS   KCG+++ AR +FD MP++D ++W+AM
Sbjct: 333 MYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAM 392

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ  +  E L LF  MQI   K +E  +VSV+SACTHL ALDQG+W H YI +N L
Sbjct: 393 ISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGL 452

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K+ + LGT L++MY K G +  A++ F G++E+ V TW ++I GLAMNG  +KSL+ FS 
Sbjct: 453 KINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSE 512

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+ GV PNE+TFV+VL  C  +GLV+EG  HF+SM +E+ I P ++HYGC+VDL GRAG
Sbjct: 513 MKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAG 572

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA ++I  MPM P    WGALL AC+ Y + E GE   RKLVEL   + G  VLLSN
Sbjct: 573 MLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSN 632

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA   NW  V+ VR +M+  GV K PGCS+IE    VHEF AGD+THP+   IE ML E
Sbjct: 633 IYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDE 692

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++++LKL GY  +T  V  DI+EEEKE TL +HSEK+AIAFGLI++    PIRIVKNLR+
Sbjct: 693 MAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRI 752

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+ISK FNREI+VRDR+RFHHFK+G CSC  YW
Sbjct: 753 CNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 33/295 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y  +G +   + V+D + E +V+   +MI    K G+V+ A K+F+EM ++D ++W+A++
Sbjct: 202 YVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALI 261

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + Y Q     EAL LF  M  + + ++EV ++SVLSAC+ L  +  G+  H  + +  ++
Sbjct: 262 SCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIE 321

Query: 122 MTVTLGTALVDMYS-------------------------------KCGNMNKAMDFFWGM 150
             V L  AL+ MYS                               KCG + KA   F  M
Sbjct: 322 TYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSM 381

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            +++  +W+++I G A      ++L LF  M+  G +P+E   VSV+  C  +  +++G+
Sbjct: 382 PDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGK 441

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               +  R+ G++  +     L+++Y + G +++AL+V   +  K     W AL+
Sbjct: 442 -WIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKG-VSTWNALI 494



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 40/218 (18%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  Q  +I+  A CG++  ARK+FD     D ++WN+MLAGY   G   EA  ++  
Sbjct: 158 DSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDR 217

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M                                   ERN     V    +++ ++ K GN
Sbjct: 218 MP----------------------------------ERN-----VIASNSMIVLFGKKGN 238

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  MK++++ +W+++I     N   E++L LF  M   G+  +EV  +SVL  
Sbjct: 239 VEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSA 298

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           C  + +V  G+     +  + GIE ++     L+ +Y 
Sbjct: 299 CSRLLVVITGK-LVHGLVVKVGIETYVNLQNALIHMYS 335



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 99/243 (40%), Gaps = 44/243 (18%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
           +++ + ++F  +   +    N M+ GY Q     +A+ ++  M   +V  +  +   +  
Sbjct: 75  NINQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
           +C+   A   G+    ++ +      V +   L++MY+ CGN++ A   F G    ++ +
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           W S++ G  +                                   VG VEE ++ +D M 
Sbjct: 195 WNSMLAGYVL-----------------------------------VGNVEEAKDVYDRMP 219

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
               I         ++ L+G+ G ++EA  + N+M  K    +W AL++    Y+  EM 
Sbjct: 220 ERNVIAS-----NSMIVLFGKKGNVEEACKLFNEMKQKDLV-SWSALISC---YEQNEMY 270

Query: 278 ELA 280
           E A
Sbjct: 271 EEA 273


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/461 (52%), Positives = 330/461 (71%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+ LG +     VF  I   DVV  T+M++   K GDV  ARK+FD+MPE++ + W+ M
Sbjct: 157 MYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVM 216

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+     +A+ L+ L+Q   V  NE  MVSV+++C HLGAL+ G  AH YI RN++
Sbjct: 217 ISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKM 276

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + LGTALVDMY++CG+++KA+  F  +  R+  +WT++I G AM+G  EK+LE FS 
Sbjct: 277 TVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSR 336

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++AG+ P E+TF +VL  C   GLVE G E F+SM+R+Y IEP LEHYGC+VDL GRAG
Sbjct: 337 MEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAG 396

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L EA   +N+MPMKP+A  WGALL ACR++KN+E+ E A + L+EL+ ++ G YVLLSN
Sbjct: 397 KLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSN 456

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  W+ V N+RQ+MK +GV K PG ++ E+D +VH+F  GD+THP   +IE M  E
Sbjct: 457 IYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEE 516

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  +++LAGY  N +  ++DI+EEEKE  + +HSEK+AIA+ ++  K   PIRIVKNLRV
Sbjct: 517 ILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRV 576

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  TK+ISKV+ RE+IVRDRNRFHHFK G CSC  YW
Sbjct: 577 CEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 35/286 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   + +IS       +D A ++F ++   +   +N+ + G++      ++ H +   +
Sbjct: 46  DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYIERNRLKMTVTLG--- 127
            + +  + ++   ++ ACT  G+LD G  AH           VY++ + + M  TLG   
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165

Query: 128 -----------------TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
                            T++V  Y K G++  A   F  M E+N+ TW+ +I G A N  
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSF 225

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHY 229
            +K++EL+ L++  GV  NE   VSV+  C  +G +E G R H   +R +  +   L   
Sbjct: 226 FDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILG-- 283

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
             LVD+Y R G +D+A+ V +++P +  A +W  L+    M+   E
Sbjct: 284 TALVDMYARCGSIDKAIWVFDQLPGRD-ALSWTTLIAGFAMHGYAE 328



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 112/234 (47%), Gaps = 14/234 (5%)

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           +S L +CT L  L   +  H ++ R      V   + L+ +      ++ A   F+ ++ 
Sbjct: 19  LSFLESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-RE 211
            N++ + S I G + +   +KS   +   K+ G+ P+ +T+  +++ C   G ++ G + 
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           H   +R  +  + ++++   LV +Y   G +  A  V  ++       +W +++      
Sbjct: 136 HGQIIRHGFDSDVYVQN--SLVTMYSTLGDIKSASYVFRRISCLD-VVSWTSMVAGY--- 189

Query: 272 KNTEMGELAS-RKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
              + G++ S RKL + +  KN   + ++ + YA++  +D+ I +  +++++GV
Sbjct: 190 --IKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGV 241


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 230/435 (52%), Positives = 315/435 (72%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T+++   AKCG VD AR++FD+M  RD +AW+AM++GY+Q  + REAL LFH MQ  ++ 
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            NE++MVS+LS+C  LGAL+ G+W H +I++ R+K+TVTLGTAL+D Y+KCG++  +++ 
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  +NV +WT +I GLA NG G+K+LE F LM +  V PN+VTF+ VL  C   GLV
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLV 443

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +EGR+ F SM R++GIEP +EHYGC+VD+ GRAG ++EA   I  MP++P+A  W  LL 
Sbjct: 444 DEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLA 503

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           +C+++KN E+GE + ++L+ LE  + G Y+LLSNIYA    W+  + VR  MK KG+KK 
Sbjct: 504 SCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKT 563

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS+IE+D  +HEFFA D  H +  EI   + ++ +++K AGYV NT     D EE++K
Sbjct: 564 PGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDK 623

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E ++  HSEK+AIAFGLI    G  IRI KNLRVC DCH+ TK++SKVFNREI+VRDR R
Sbjct: 624 ESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTR 683

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFKEG CSC  YW
Sbjct: 684 FHHFKEGSCSCNDYW 698



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 4/242 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +  +I   A CG+V++AR++FDEM ER+   WN+M AGY + G   E + LFH M   D+
Sbjct: 162 KNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDI 221

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + +EV++VSVL+AC  L  L+ G W + Y+E   LK   TL T+LVDMY+KCG ++ A  
Sbjct: 222 RFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARR 281

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  R+V  W+++I G +      ++L+LF  M++A + PNE+T VS+L  C V+G 
Sbjct: 282 LFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGA 341

Query: 206 VEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +E G+  HF   ++   +   L     L+D Y + G ++ +++V  KMP+K +  +W  L
Sbjct: 342 LETGKWVHFFIKKKRMKLTVTLG--TALMDFYAKCGSVESSIEVFGKMPVK-NVLSWTVL 398

Query: 265 LN 266
           + 
Sbjct: 399 IQ 400



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 2/228 (0%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +D A  +F ++ E D  A+N M+ G+       EA+ LF  M  + V+ +E +   +L  
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C+ L AL +G   H  I +        +   L+ MY+ CG +  A   F  M ERNV TW
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
            S+  G   +G  E+ ++LF  M +  +R +EVT VSVL  C  +  +E G E  +    
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYVE 252

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E G++        LVD+Y + G++D A  + ++M  +    AW A+++
Sbjct: 253 EKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRR-DVVAWSAMIS 299



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 37/234 (15%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA++   AKCG V+ + ++F +MP ++ ++W  ++ G A  G+ ++AL  F+LM  
Sbjct: 361 VTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLE 420

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
            +V+ N+V+ + VLSAC+H G +D+GR   V + R+                        
Sbjct: 421 KNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRD------------------------ 456

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
                +G++ R +  +  ++  L   G  E   E F  +K   ++PN V + ++L  C V
Sbjct: 457 -----FGIEPR-IEHYGCMVDILGRAGLIE---EAFQFIKNMPIQPNAVIWRTLLASCKV 507

Query: 203 VGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALDVINKMPMK 255
              VE G E   S+++   +EP     Y  L ++Y   GR ++AL V  +M  K
Sbjct: 508 HKNVEIGEE---SLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEK 558



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC--GNMNKAMDFFWGMKE 152
           +L  C  +  L++    H ++ + RL +   +   L++  +     +M+ A+  F  + E
Sbjct: 30  ILEQCKTIRDLNE---IHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDE 86

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
            +   +  +I G  +  +  +++ LF  M +  V+P+E TF  +L+ C  +  + EG + 
Sbjct: 87  PDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQI 146

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           H   M+  +G   ++++   L+ +Y   G ++ A  V ++M  + +   W ++ 
Sbjct: 147 HALIMKCGFGSHGFVKN--TLIHMYANCGEVEVARRVFDEMSER-NVRTWNSMF 197


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/462 (51%), Positives = 324/462 (70%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFD-GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           +Y+  G +   +++FD G    D++   +MIS   +CG +  A  +F  MPE+D ++W+A
Sbjct: 314 LYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSA 373

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M++GYAQ     EAL LF  MQ+H V+ +E ++VS +SACTHL  LD G+W H YI RN+
Sbjct: 374 MISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNK 433

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L++ V L T L+DMY KCG +  A++ F+ M+E+ V TW +VI GLAMNG+ E+SL +F+
Sbjct: 434 LQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFA 493

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK+ G  PNE+TF+ VL  C  +GLV +GR +F+SM  E+ IE  ++HYGC+VDL GRA
Sbjct: 494 DMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRA 553

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA ++I+ MPM P    WGALL ACR +++ EMGE   RKL++L+  + G +VLLS
Sbjct: 554 GLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLS 613

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA   NW  V+ +R IM   GV K PGCS+IE +  VHEF AGD+THP+ N+IE ML 
Sbjct: 614 NIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLD 673

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
            ++ +LK+ GYV  T+ V  DI+EEEKE  L +HSEK+A+AFGLI++    PIR+ KNLR
Sbjct: 674 VVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLR 733

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+ISK F+R+I+VRDR+RFHHFK G CSC  +W
Sbjct: 734 ICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 152/309 (49%), Gaps = 38/309 (12%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNA 59
           Y + G +   ++VF+G+ E + +   +MI+   + G V+ AR++F+ +   ERD ++W+A
Sbjct: 181 YVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M++ Y Q     EAL LF  M+   V ++EV +VS LSAC+ +  ++ GRW H    +  
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVG 300

Query: 120 LKMTVTLGTALVDMYS--------------------------------KCGNMNKAMDFF 147
           ++  V+L  AL+ +YS                                +CG++  A   F
Sbjct: 301 VEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLF 360

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
           + M E++V +W+++I G A +    ++L LF  M+  GVRP+E   VS +  C  +  ++
Sbjct: 361 YSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLD 420

Query: 208 EGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            G+  H    R +  +   L     L+D+Y + G ++ AL+V   M  K     W A++ 
Sbjct: 421 LGKWIHAYISRNKLQVNVILS--TTLIDMYMKCGCVENALEVFYAMEEKG-VSTWNAVIL 477

Query: 267 ACRMYKNTE 275
              M  + E
Sbjct: 478 GLAMNGSVE 486



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 55/315 (17%)

Query: 15  FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74
           FDG    DV  +  +++  A CG V  AR++F+E P  D ++WN +LAGY Q G+  EA 
Sbjct: 136 FDG----DVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAE 191

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
            +F  M                                   ERN +        +++ ++
Sbjct: 192 RVFEGMP----------------------------------ERNTIA-----SNSMIALF 212

Query: 135 SKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
            + G + KA   F G+  +ER++ +W++++     N  GE++L LF  MK +GV  +EV 
Sbjct: 213 GRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVV 272

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            VS L  C  V  VE GR     +  + G+E ++     L+ LY   G + +A  + +  
Sbjct: 273 VVSALSACSRVLNVEMGR-WVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDG 331

Query: 253 PMKPHAGAWGALLNA---CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
                  +W ++++    C   ++ EM          +  K+  ++  + + YA+ + + 
Sbjct: 332 GELLDLISWNSMISGYLRCGSIQDAEM------LFYSMPEKDVVSWSAMISGYAQHECFS 385

Query: 310 RVINVRQIMKAKGVK 324
             + + Q M+  GV+
Sbjct: 386 EALALFQEMQLHGVR 400



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 100/241 (41%), Gaps = 17/241 (7%)

Query: 44  KMFDEMPERDPIAWNAMLAG--YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           ++F+ +   +   WN ++    Y Q    +  LH + L      K +  +   +L  C  
Sbjct: 59  RIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLH-YKLFLASHAKPDSYTYPILLQCCAA 117

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
             +  +GR  H +   +     V +   L+++Y+ CG++  A   F      ++ +W ++
Sbjct: 118 RVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTL 177

Query: 162 IGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR-RE 219
           + G    G  E++  +F  M +   +  N +  +   +GC     VE+ R  F+ +R RE
Sbjct: 178 LAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGC-----VEKARRIFNGVRGRE 232

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNACRMYKNTEM 276
             +  W      +V  Y +    +EAL +  +M    +        + L+AC    N EM
Sbjct: 233 RDMVSW----SAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEM 288

Query: 277 G 277
           G
Sbjct: 289 G 289


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/461 (49%), Positives = 329/461 (71%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +     +F  ++  D++  T ++S     G++D+AR  FD+MPE+D ++W AM
Sbjct: 263 MYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAM 322

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY +  + +EAL LF  MQ  +VK +E +MVSVL+AC HLGAL+ G W   YI+RN++
Sbjct: 323 IDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKI 382

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K  + +  AL+DMY KCG+++KA   F  M +R+ +TWT++I GLA+NG GEK+L++FS 
Sbjct: 383 KNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSN 442

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +A + P+E+T++ VL  C   GLV++GR++F  M  ++GIEP + HYGCLVDL  RAG
Sbjct: 443 MLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAG 502

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL EA +VI  MP+K ++  WGALL  CR+Y+ ++M E+  ++++ELE  N   YVLL N
Sbjct: 503 RLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCN 562

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA  K W+ +  +RQ+M  KG+KK PGCS+IE++  VHEF AGD +HP+   I+  L +
Sbjct: 563 IYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDK 622

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++ LKLAGY  + + V  DI EE+KE+++ +HSEK+AIAFGLI+   GV IRI KNLR+
Sbjct: 623 MTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRM 682

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH++ K++SKV+NRE+IVRDR RFHHFK G CSCK YW
Sbjct: 683 CMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 10/318 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           +CQ +  G++   V+    M   C  + GD   AR++FDE+PE +   WN M+ GY++  
Sbjct: 38  HCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLD 97

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
             +  + L+  M    VK +  +   +    T   AL+ GR  H ++ ++ L+  V + T
Sbjct: 98  FPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHT 157

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALV MY  CG ++ A   F    + +V TW  +I      G  E+S  LF +M+   V P
Sbjct: 158 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 217

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
             VT V VL  C  +  +  G++   S  +   +E  L     ++D+Y   G +D AL +
Sbjct: 218 TTVTLVLVLSACSKLKDLRTGKK-VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 276

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAESK 306
              M  +    +W  +++       T +GE+  A     ++  K++ ++  + + Y  S 
Sbjct: 277 FRSMNNR-DIISWTTIVSGF-----TNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSN 330

Query: 307 NWDRVINVRQIMKAKGVK 324
            +   + + + M+A  VK
Sbjct: 331 RFKEALELFRNMQATNVK 348


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/461 (51%), Positives = 315/461 (68%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +     VFD   E D      MI    KCG    AR+MF+ MP+RD ++W+ M
Sbjct: 180 MYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVM 239

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q  + +E L LF  M    ++ NE  +V+ LSAC HLGA++QG+W   Y+ER  +
Sbjct: 240 INGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNV 299

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++TV LGTAL+DMYSKCG++ +A++ F  MKE+NV  W+++I GLA+NG G+ +L LFS 
Sbjct: 300 RLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQ 359

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  GV+PNEVTF+ +L  C    LV+EG   F SM   YG++P   H+ C+VDLYGRAG
Sbjct: 360 MEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAG 419

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            LD+A  VI  MP KP++  WGALLNACR++ +TE+GE   ++L+EL+  + G YVLLSN
Sbjct: 420 MLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSN 479

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    WDRV  +R++M+ + V K PGCS I++   +HEF AGD +HP+   I   LGE
Sbjct: 480 IYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGE 539

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +S+ LK AGY  +T  V+ D++EEEKE  LC HSEK+AIAFGLI    G  IRI KNLRV
Sbjct: 540 MSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRV 599

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  TK+ISK++NREIIVRDR RFHHF++G CSC  +W
Sbjct: 600 CADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 35/291 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAM-ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           + Q +  GI   + V    +  +A +  G +  AR +F  + + D    N ++  YA   
Sbjct: 55  HAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSP 114

Query: 69  KSREALHLFHLMQIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
              +A+  +  M    V   +V +   +L AC+ + +L  G   H ++ +      V++ 
Sbjct: 115 NPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVS 174

Query: 128 TALVDMYS-------------------------------KCGNMNKAMDFFWGMKERNVY 156
             LV MY+                               KCG    A   F  M +R+V 
Sbjct: 175 NFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVV 234

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W+ +I G       ++ L LF  M    + PNE   V+ L  C  +G +E+G+     M
Sbjct: 235 SWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYM 294

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            R+  +   +     L+D+Y + G ++ AL+V +KM  K +  AW A++N 
Sbjct: 295 ERK-NVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEK-NVLAWSAMING 343


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/463 (51%), Positives = 326/463 (70%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +++FD + E D+V  T M+   AK G+ D A+ +FD MP +D  AWNA+
Sbjct: 281 MYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNAL 340

Query: 61  LAGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y QCGK +EAL LFH +Q+    K +EV++VS LSAC  LGA+D G W HVYI++  
Sbjct: 341 ISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQG 400

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +K+   L T+L+DMY KCG++ KA+  F  ++ ++V+ W+++I GLAM+G G+ ++ LFS
Sbjct: 401 MKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFS 460

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++  V+PN VTF ++L  C  VGLVEEGR  F+ M   YG+ P ++HY C+VD+ GRA
Sbjct: 461 KMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRA 520

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L+EA+++I KMPM P A  WGALL AC +++N  + E A  +L+ELE  NHGAYVLLS
Sbjct: 521 GLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLS 580

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA++  WDRV  +R++M+  G+KK PGCS IEVD  VHEF  GD +HP   +I   L 
Sbjct: 581 NIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLD 640

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI  RL+  GYV N + ++  +EEE+ KE  L  HSEK+AIAFGLIS  +  PIRIVKNL
Sbjct: 641 EIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNL 700

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH V K++SK+++REI++RDR RFHHF+EG CSC  YW
Sbjct: 701 RVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 34/282 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++I   AKCG++ L  ++F  +P RD ++WN+M+  + Q G   EAL LF  M+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +VK N ++MV VLSAC      + GRW H YIERNR+  ++TL  A++DMY+KCG++ 
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVE 289

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLA-------------------------------MNGA 170
            A   F  M E+++ +WT+++ G A                                 G 
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGK 349

Query: 171 GEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
            +++LELF  L      +P+EVT VS L  C  +G ++ G      ++++ G++      
Sbjct: 350 PKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ-GMKLNCHLT 408

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
             L+D+Y + G L +AL V + +  K     W A++    M+
Sbjct: 409 TSLIDMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMH 449



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-- 77
           +P    +    +A +    +D A+++FD++P  +   WN ++  YA      ++L +F  
Sbjct: 66  DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLR 125

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            L Q  D   ++ +   ++ A + L  L  G+  H  + +  L   V +  +L+  Y+KC
Sbjct: 126 MLHQSPDFP-DKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC 184

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +      F  +  R+V +W S+I      G  E++LELF  M+   V+PN +T V VL
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVL 244

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             C      E GR     + R   I   L     ++D+Y + G +++A  + +KMP K
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNR-IGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK 301


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/461 (49%), Positives = 329/461 (71%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +     +F  ++  D++  T ++S     G++D+AR  FD+MPE+D ++W AM
Sbjct: 284 MYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAM 343

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY +  + +EAL LF  MQ  +VK +E +MVSVL+AC HLGAL+ G W   YI+RN++
Sbjct: 344 IDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKI 403

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K  + +  AL+DMY KCG+++KA   F  M +R+ +TWT++I GLA+NG GEK+L++FS 
Sbjct: 404 KNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSN 463

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +A + P+E+T++ VL  C   GLV++GR++F  M  ++GIEP + HYGCLVDL  RAG
Sbjct: 464 MLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAG 523

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL EA +VI  MP+K ++  WGALL  CR+Y+ ++M E+  ++++ELE  N   YVLL N
Sbjct: 524 RLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCN 583

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA  K W+ +  +RQ+M  KG+KK PGCS+IE++  VHEF AGD +HP+   I+  L +
Sbjct: 584 IYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDK 643

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++ LKLAGY  + + V  DI EE+KE+++ +HSEK+AIAFGLI+   GV IRI KNLR+
Sbjct: 644 MTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRM 703

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH++ K++SKV+NRE+IVRDR RFHHFK G CSCK YW
Sbjct: 704 CMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 10/318 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           +CQ +  G++   V+    M   C  + GD   AR++FDE+PE +   WN M+ GY++  
Sbjct: 59  HCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLD 118

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
             +  + L+  M    VK +  +   +    T   AL+ GR  H ++ ++ L+  V + T
Sbjct: 119 FPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHT 178

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALV MY  CG ++ A   F    + +V TW  +I      G  E+S  LF +M+   V P
Sbjct: 179 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 238

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
             VT V VL  C  +  +  G++   S  +   +E  L     ++D+Y   G +D AL +
Sbjct: 239 TTVTLVLVLSACSKLKDLRTGKK-VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 297

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAESK 306
              M  +    +W  +++       T +GE+  A     ++  K++ ++  + + Y  S 
Sbjct: 298 FRSMNNR-DIISWTTIVSGF-----TNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSN 351

Query: 307 NWDRVINVRQIMKAKGVK 324
            +   + + + M+A  VK
Sbjct: 352 RFKEALELFRNMQATNVK 369


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/465 (51%), Positives = 327/465 (70%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G LG+ ++VFD I +PD+    ++I+A  + G VD+AR +F  MPER+ I+W+ M
Sbjct: 108 MYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCM 167

Query: 61  LAGYAQCGKSREALHLFHLMQ---IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           + GY +CG+ +EAL LF  MQ   ++DV+ NE +M  VL+AC  LGAL+ G+WAH YI++
Sbjct: 168 INGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDK 227

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLE 176
             + + V LGTAL+DMY+KCG++ KA   F  +   ++V  W+++I GLAM+G  E+ + 
Sbjct: 228 CGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVG 287

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LFS M   GVRPN VTF++V   C   GLV EG+++   M  +Y I P ++HYGC+VDLY
Sbjct: 288 LFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLY 347

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAGR+ EA +V+  MPM+P    WGALL+  RM+ + E  ELA +KL+ELE  N GAYV
Sbjct: 348 GRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYV 407

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSN+YA+   W+ V +VR +M+  G+KK+PGCS+IEV   +HEFF GD++HP   +I +
Sbjct: 408 LLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHM 467

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
           ML EI  RLK+ GYV NT  V+ D++EE KE  L  HSEK+A+A+G +    G PIRIVK
Sbjct: 468 MLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVK 527

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH   KMISKVF+REIIVRD NRFHHF +G CSC+ YW
Sbjct: 528 NLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 40/265 (15%)

Query: 50  PERDPIAWNAMLAGYAQC-----GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           P  +   WN ++  + Q      G +   + +F  M+ H V+ +  +   +L +      
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM------------------------ 140
           L  GR  H  I R  L +   + T+L+ MYS CGN+                        
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139

Query: 141 -------NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG---VRPNE 190
                  + A + F  M ERNV +W+ +I G    G  +++L LF  M+  G   VRPNE
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T   VL  C  +G +E G+     + +  G+   +     L+D+Y + G +++A  V +
Sbjct: 200 FTMSGVLAACGRLGALEHGKWAHAYIDK-CGMPVDVVLGTALIDMYAKCGSVEKATWVFS 258

Query: 251 KMPMKPHAGAWGALLNACRMYKNTE 275
            +       AW A+++   M+   E
Sbjct: 259 NLGPNKDVMAWSAMISGLAMHGLAE 283


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/460 (51%), Positives = 320/460 (69%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y  +G +     +FD + E D+V    MI   A  GDV  A+K+FD   ERD I+W++M+
Sbjct: 181 YVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMI 240

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A YA+  +S EAL LFH MQ+ +V  ++V+MVSVLSAC  +GAL  G+  H  IERNR++
Sbjct: 241 AAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIE 300

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + + LGT+LVDMY+KCG+++ ++  F GM  R+V+ W+++I GLA +G GE +L+ FS M
Sbjct: 301 IDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM 360

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
               ++PN+VTF+ VL  C  +GLV+EG  +F SM + Y + P +EHYGC+VD+ GRAGR
Sbjct: 361 ISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGR 420

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L EA+++I  MP  P A  W ALL ACR+YKN E+ E A+  L+ELE    G YVLLSNI
Sbjct: 421 LQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNI 480

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           Y+++K WD+V+NVR++MK   ++K+PG S IEVD  VHEF AGD++HP   +I  ML EI
Sbjct: 481 YSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEI 540

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
           + RLK  GY   T  V+ D +E+EKE+ L  HSEK+AIAFGL+S   G  IRIVKNLRVC
Sbjct: 541 TARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVC 600

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K+IS+ + R IIVRDRNRFHHF  G CSCK YW
Sbjct: 601 DDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 131/312 (41%), Gaps = 68/312 (21%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNEV 90
           AC+   D+  AR +FDE+P  D   WN M+  Y      +E++ LF  M+  + + ++  
Sbjct: 47  ACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSY 106

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN----------- 139
           S+  V+ AC  L     G+  H  + +  L   + + TAL++MY+K G+           
Sbjct: 107 SLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEM 166

Query: 140 --------------------MNKAMDFFWGMKERNVYTWTSVIGGLAMNG---------- 169
                               +N A D F  M ER++ +W ++I G A  G          
Sbjct: 167 AHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFD 226

Query: 170 ---------------------AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
                                   ++L LF  M+ A V P++VT VSVL  C  VG +  
Sbjct: 227 RTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGM 286

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G+   + + R   IE  L+    LVD+Y + G +D +L V N M  +    AW A++   
Sbjct: 287 GKMIHECIERNR-IEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNR-DVFAWSAMIMGL 344

Query: 269 RMYKNTEMGELA 280
               N   GELA
Sbjct: 345 ---ANHGFGELA 353


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 313/435 (71%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA+I   AKCG++  AR++FD M  RD +AW+AM++GY Q  + REAL LF  MQ+ +V+
Sbjct: 259 TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVE 318

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N+V+MVSVLSAC  LGAL+ G+W H YI R RL +T+ LGTALVD Y+KCG ++ A++ 
Sbjct: 319 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEA 378

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  +N +TWT++I G+A NG G ++LELFS M++A + P +VTF+ VL  C    LV
Sbjct: 379 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLV 438

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEGR HFDSM ++YGI+P  EHYGC+VDL GRAG +DEA   I  MP++P+A  W ALL+
Sbjct: 439 EEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLS 498

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           +C ++KN E+GE A +++V L   + G Y+LLSNIYA    W     +R+ MK +G++K 
Sbjct: 499 SCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKT 558

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS+IE+D  V EFFA D  HP+  EI   + E+  R+K+AGY+ NT  V  +++E EK
Sbjct: 559 PGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEK 618

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E ++  HSEK+AIAFGL+ L  G  IR+ KNLRVC DCH  TK+ISKV+NREI+VRDRNR
Sbjct: 619 EVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNR 678

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  YW
Sbjct: 679 FHHFKDGTCSCNDYW 693



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 134/239 (56%), Gaps = 2/239 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +++I   A C DV  A+ +FD + E   + WNA++  Y + G   E + +F  M    V 
Sbjct: 158 SSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVA 217

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +E+++VSV++AC  +G    G+W   Y++   L     L TAL+DMY+KCG + KA   
Sbjct: 218 FDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRL 277

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F GM+ R+V  W+++I G        ++L LFS M+ A V PN+VT VSVL  C V+G +
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGAL 337

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           E G+     +RR+  +   +     LVD Y + G +D+A++    MP+K ++  W AL+
Sbjct: 338 ETGKWVHSYIRRKR-LSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALI 394



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 12/222 (5%)

Query: 52  RDPIA---WNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107
           R P++   +N ++      G   +ALHLF  ++ +  V  ++ ++   L +C+ +  LD 
Sbjct: 78  RPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDV 137

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           GR    Y  +  L     + ++L+ MY+ C ++  A   F  ++E  V  W ++I     
Sbjct: 138 GRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMK 197

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEP 224
           NG   + +E+F  M + GV  +E+T VSV+  C  +G  + G+   E+ D    E G+  
Sbjct: 198 NGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVD----EKGLVR 253

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
                  L+D+Y + G L +A  + + M  +    AW A+++
Sbjct: 254 NRNLMTALIDMYAKCGELGKARRLFDGMQSR-DVVAWSAMIS 294



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 19/166 (11%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           ++  TA++   AKCG +D A + F+ MP ++   W A++ G A  G+ REAL LF  M+ 
Sbjct: 356 IILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRK 415

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT--------ALVDMY 134
             ++  +V+ + VL AC+H   +++GR       R+   MT   G          +VD+ 
Sbjct: 416 ASIEPTDVTFIGVLMACSHSCLVEEGR-------RHFDSMTQDYGIKPRAEHYGCVVDLL 468

Query: 135 SKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG---AGEKSLE 176
            + G +++A  F   M  E N   W +++   A++     GE++L+
Sbjct: 469 GRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALK 514


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/461 (50%), Positives = 323/461 (70%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +     +FD +   DV+  TA+++     G V LAR  FD+MPERD ++W AM
Sbjct: 264 MYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAM 323

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q  + +E L LF  MQ  ++K +E +MVS+L+AC HLGAL+ G W   YI++N +
Sbjct: 324 IDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEI 383

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K+   +G AL+DMY  CGN+ KA+  F  M  R+  +WT+VI GLA+NG GE++L++FS 
Sbjct: 384 KIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQ 443

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +A + P+EVT + VL  C   G+V++G++ F  M  ++GIEP + HYGC+VDL GRAG
Sbjct: 444 MLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAG 503

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA +VI  MP+KP++  WG+LL ACR++++ EM E+A+++++ELE +N   YVLL N
Sbjct: 504 HLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCN 563

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    W+++  VR++M  +G+KK PGCS+IE++  VHEF AGD+ HP+  EI   L E
Sbjct: 564 IYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDE 623

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +S  LK AGY  +T+ V  DI EEEKE  + +HSEK+AIAFGLIS   GV IRIVKNLR+
Sbjct: 624 MSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRM 683

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V K++SKV+NRE+IVRDR RFHHF+ G CSCK YW
Sbjct: 684 CVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 144/278 (51%), Gaps = 39/278 (14%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V  Q A+I   +  G+V +AR +FD   + D + WN M++GY +  +  E++ LF  M+
Sbjct: 153 NVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEME 212

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  + +++VSVLSAC+ L  L+ G+  H Y++  +++    L  AL+DMY+ CG+M+
Sbjct: 213 RMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMD 272

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGA------------------------------- 170
            A+  F  MK R+V +WT+++ G    G                                
Sbjct: 273 TALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNR 332

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG---REHFDSMRREYGIEPWLE 227
            ++ L LF  M+ A ++P+E T VS+L  C  +G +E G   + + D  + E  I+ ++ 
Sbjct: 333 FKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYID--KNEIKIDSFVG 390

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +   L+D+Y   G +++A+ + N MP +    +W A++
Sbjct: 391 N--ALIDMYFNCGNVEKAIRIFNAMPHRDKI-SWTAVI 425



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 145/309 (46%), Gaps = 9/309 (2%)

Query: 18  IHEPDVVCQTAMISACAK--CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           I  P V  Q  +I+ C K   GD++ AR +FD MP  +   WN M+ GY++ G    A+ 
Sbjct: 48  ISNPIVPAQ--IIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVS 105

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           ++  M    V  +E +   +L   T   A+  GR  H +I +      V +  AL+ +YS
Sbjct: 106 MYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYS 165

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
             G ++ A   F    + +V TW  +I G   +   ++S++LF  M++  V P+ +T VS
Sbjct: 166 LSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVS 225

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C  +  +  G+       ++  IEP       L+D+Y   G +D AL + + M  +
Sbjct: 226 VLSACSKLKDLNVGKR-VHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR 284

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
               +W A++     + N     LA     ++  ++  ++  + + Y +   +  V+++ 
Sbjct: 285 -DVISWTAIVTG---FTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLF 340

Query: 316 QIMKAKGVK 324
           + M+A  +K
Sbjct: 341 REMQAANIK 349


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/463 (50%), Positives = 325/463 (70%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   +++FD + E D+V  T MI   AK GD D AR++FD MP  D  AWNA+
Sbjct: 276 MYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNAL 335

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y Q GK +EAL +F  +Q++ + K NEV++ S L+AC  LGA+D G W HVYI++  
Sbjct: 336 ISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQG 395

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +K+   + T+L+DMYSKCG++ KA++ F+ ++ R+V+ W+++I GLAM+G G  +++LFS
Sbjct: 396 IKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFS 455

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++  V+PN VTF ++L  C   GLV+EGR  F+ MR  YG+ P  +HY C+VD+ GRA
Sbjct: 456 KMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRA 515

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L+EA+++I KMP+ P A  WGALL ACR+Y N E+ E+A  +L+E ++ NHGAYVLLS
Sbjct: 516 GCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLS 575

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA++  WD V  +RQ MK  G++K PGCS IEV+  +HEF  GD +HP   EI   L 
Sbjct: 576 NIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLD 635

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI  R+K  GYV++ + ++  +EEE  KE  L  HSEK+AIA+GLI ++   PIRIVKNL
Sbjct: 636 EIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNL 695

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH V K+ISK++NR+I++RDR RFHHF  G CSC  YW
Sbjct: 696 RVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 144/282 (51%), Gaps = 34/282 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    ++I   +  GD+D A  +F ++ E+D ++WN+M++G+ Q G   EAL LF  M+
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           + + + N V+MV VLSAC     L+ GRWA  YIERN + + + L  A++DMY KCG++ 
Sbjct: 225 MENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLE 284

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLA-------------------------------MNGA 170
            A   F  M+E+++ +WT++I G A                                NG 
Sbjct: 285 DARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGK 344

Query: 171 GEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
            +++L +F  L      +PNEVT  S L  C  +G ++ G      ++++ GI+      
Sbjct: 345 PKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ-GIKLNFHIT 403

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
             L+D+Y + G L++AL+V   +  +     W A++    M+
Sbjct: 404 TSLIDMYSKCGHLEKALEVFYSVERR-DVFVWSAMIAGLAMH 444



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 6/238 (2%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D    T + +ACA      +D A K+FD++P  +   WN ++  +A   K  + L +F +
Sbjct: 61  DPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVF-I 119

Query: 80  MQIHDVK--LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             +H+ +   N  +   V+ A T + +L  G+  H  + +      + +  +L+  YS  
Sbjct: 120 QMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSL 179

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+++ A   F  + E+++ +W S+I G    G+ E++L+LF  MK    RPN VT V VL
Sbjct: 180 GDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVL 239

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             C     +E GR   D + R  GI+  L     ++D+Y + G L++A  + +KM  K
Sbjct: 240 SACAKRIDLEFGRWACDYIERN-GIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK 296


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/435 (53%), Positives = 311/435 (71%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++   AKCG++  AR++FD M  RD +AW+AM++GY Q  + REAL LF  MQ+  V+
Sbjct: 260 TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVE 319

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N+V+MVSVLSAC  LGAL+ G+W H Y+ R RL +T  LGTALVD Y+KCG ++ A++ 
Sbjct: 320 PNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEA 379

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  +N +TWT++I G+A NG G ++LELFS M++AG+ P +VTF+ VL  C    LV
Sbjct: 380 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLV 439

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEGR HFDSM R+YGI+P +EHYGC+VDL GRAG +DEA   I  MP++P+A  W ALL+
Sbjct: 440 EEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLS 499

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           +C +++N  +GE A ++++ L   + G YVLLSNIYA +  W     VR+ MK +G++K 
Sbjct: 500 SCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKT 559

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS+IE+D  V EFFA D  HP   EI   + E+  R+K+AGYV NT  V  ++EE EK
Sbjct: 560 PGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREK 619

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E ++  HSEK+AIAFGL+ L  G  IR+ KNLRVC DCH  TK+ISKV++REI+VRDRN 
Sbjct: 620 EVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNI 679

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  YW
Sbjct: 680 FHHFKDGTCSCNDYW 694



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 4/241 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +++I   A CGDV  AR +FD   E   + WNA++A Y + G   E + +F  M    V 
Sbjct: 159 SSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVA 218

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +EV++VSV++AC  +G    G+W   +++   L     L TAL+DMY+KCG + KA   
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRL 278

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F GM+ R+V  W+++I G        ++L LFS M+ A V PN+VT VSVL  C V+G +
Sbjct: 279 FDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGAL 338

Query: 207 EEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           E G+  H    R+   +   L     LVD Y + G +D+A++    MP+K ++  W AL+
Sbjct: 339 ETGKWVHSYVRRKRLSLTTILG--TALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALI 395

Query: 266 N 266
            
Sbjct: 396 K 396



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 13/223 (5%)

Query: 52  RDPIA---WNAMLAGYAQCGKSREALHLF--HLMQIHDVKLNEVSMVSVLSACTHLGALD 106
           R P++   +N ++  +   G   +ALHLF   L        ++ +    L +C+ + ALD
Sbjct: 78  RPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALD 137

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
            GR    Y  +  L     + ++L+ MY+ CG++  A   F   +E  V  W +++    
Sbjct: 138 VGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYL 197

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIE 223
            NG   + +E+F  M + GV  +EVT VSV+  C  +G  + G+    H D    E G+ 
Sbjct: 198 KNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVD----EEGLA 253

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
              +    L+D+Y + G + +A  + + M  +    AW A+++
Sbjct: 254 RNPKLVTALMDMYAKCGEIGKARRLFDGMQSR-DVVAWSAMIS 295


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/462 (51%), Positives = 322/462 (69%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA +G +   + VF  +   DVV  T MI+   +CGD   AR++FD MPER+ + W+ M
Sbjct: 161 MYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTM 220

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+     +A+  F  +Q   V  NE  MV V+S+C HLGAL  G  AH Y+ RN+L
Sbjct: 221 ISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKL 280

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + LGTA+VDMY++CGN+ KA+  F  + E++V  WT++I GLAM+G  EK+L  FS 
Sbjct: 281 SLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSE 340

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + G  P ++TF +VL  C   G+VE G E F+SM+R++G+EP LEHYGC+VDL GRAG
Sbjct: 341 MAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAG 400

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L +A   + KMP+KP+A  W ALL ACR++KN E+GE   + L+E++ +  G YVLLSN
Sbjct: 401 KLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSN 460

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  W  V  +RQ+MK KGV+K PG S+IE+D +VHEF  GD+THP   +IE +  +
Sbjct: 461 IYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWED 520

Query: 361 IS-RRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           I   ++KLAGYV NT   M+DI+EEEKE  L +HSEK+AIA+G++ ++   PIRIVKNLR
Sbjct: 521 IILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLR 580

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH  TK+ISKVF  E+IVRDRNRFHHFKEG CSC  YW
Sbjct: 581 VCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 115/288 (39%), Gaps = 37/288 (12%)

Query: 22  DVVCQTAMISAC--AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           DV   + +I+ C  +    +  A ++  ++   +   +NA++ G +       + H +  
Sbjct: 48  DVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIK 107

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
                +  + ++   ++ AC  L     G   H    ++  +    +  +LV MY+  G+
Sbjct: 108 ALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGD 167

Query: 140 MNKAMDFFWGMKERNVYTWT-------------------------------SVIGGLAMN 168
           +N A   F  M   +V +WT                               ++I G A N
Sbjct: 168 INAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARN 227

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLE 227
              EK++E F  ++  GV  NE   V V+  C  +G +  G + H   MR +  +   L 
Sbjct: 228 NCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILG 287

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
               +VD+Y R G +++A+ V  ++P K     W AL+    M+   E
Sbjct: 288 --TAVVDMYARCGNVEKAVMVFEQLPEK-DVLCWTALIAGLAMHGYAE 332


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/453 (50%), Positives = 321/453 (70%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +   +K+FD  +  D++   +MIS   KC  VD A+ +FD MPE+D ++W++M
Sbjct: 420 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 479

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ     E L LF  MQ+   K +E ++VSV+SAC  L AL+QG+W H YI+RN L
Sbjct: 480 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGL 539

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + V LGT L+DMY KCG +  A++ F+GM E+ + TW ++I GLAMNG  E SL++FS 
Sbjct: 540 TINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSN 599

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+  V PNE+TF+ VL  C  +GLV+EG+ HF SM  ++ I+P ++HYGC+VDL GRAG
Sbjct: 600 MKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAG 659

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L EA +++N+MPM P    WGALL AC+ + ++EMG    RKL+EL+  + G +VLLSN
Sbjct: 660 KLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSN 719

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    WD V+ +R +M    V K+PGCS+IE +  +HEF AGD+THP  + IE ML E
Sbjct: 720 IYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVE 779

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++ +LKL GY  + N V+ D++EEEKE TL +HSEK+AIAFGLI++    PIRI+KNLR+
Sbjct: 780 MAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRI 839

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEG 453
           C DCH   K+ISK F R+I+VRDR+RFHHF++G
Sbjct: 840 CNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 33/295 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y E+G +   + ++  + E  ++   +MI      G V  A K+FDEM E+D + W+A++
Sbjct: 289 YIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALI 348

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A + Q     EA+  F  M    V ++EV  VS LSAC +L  ++ G+  H    +   +
Sbjct: 349 ACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTE 408

Query: 122 MTVTLGTALVDMYSKCGNM-------------------------------NKAMDFFWGM 150
             + L  AL+ MYSKCG++                               + A   F  M
Sbjct: 409 SYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM 468

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            E++V +W+S+I G A N   +++L LF  M+ +G +P+E T VSV+  C  +  +E+G+
Sbjct: 469 PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 528

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                ++R  G+   +     L+D+Y + G ++ AL+V   M ++     W AL+
Sbjct: 529 WVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALI 581



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 135/314 (42%), Gaps = 62/314 (19%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  +  +I+  + C ++  A ++F+E    D ++WN++LAGY + G   EA H++H 
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 304

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M                                   ER     ++    +++ ++   G 
Sbjct: 305 MP----------------------------------ER-----SIIASNSMIVLFGMRGL 325

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  M E+++ TW+++I     N   E+++  F  M + GV  +EV  VS L  
Sbjct: 326 VVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSA 385

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL-------DEA--LDVIN 250
           C  + +V  G+    S+  + G E ++     L+ +Y + G +       DEA  LD+I 
Sbjct: 386 CANLLVVNMGKL-IHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI- 443

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
                    +W ++++    Y    + + A      +  K+  ++  + + YA++  +D 
Sbjct: 444 ---------SWNSMISG---YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 491

Query: 311 VINVRQIMKAKGVK 324
            + + Q M+  G K
Sbjct: 492 TLALFQEMQMSGFK 505


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/461 (49%), Positives = 320/461 (69%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G LG  +++F+G+ +  VV  TAMI+ C +   ++ AR +FD    RD + W AM
Sbjct: 271 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L+ YAQ     +A +LF  M+   V+  +V++VS+LS C   GALD G+W H YI++ R+
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERV 390

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   L TALVDMY+KCG++N A   F     R++  W ++I G AM+G GE++L++F+ 
Sbjct: 391 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 450

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ GV+PN++TF+ +L  C   GLV EG++ F+ M   +G+ P +EHYGC+VDL GRAG
Sbjct: 451 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 510

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            LDEA ++I  MP+KP+   WGAL+ ACR++KN ++GELA+ +L+E+E +N G  VL+SN
Sbjct: 511 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSN 570

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  W     VR+ MK  G+KK PG SVIEV+  VHEF  GD++HP+   I  ML E
Sbjct: 571 IYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAE 630

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + R+L  AGYV +T+ V+ +I+EEEKE  L  HSEK+A+AFGLIS     PIRIVKNLRV
Sbjct: 631 MRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRV 690

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  TK++SK++ R IIVRDRNRFHHF+EG CSC  YW
Sbjct: 691 CNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 125/260 (48%), Gaps = 40/260 (15%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A++    +C  V+ AR +FD+M ERD ++W+ M+   ++  +   AL L   M 
Sbjct: 158 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 217

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK--MTVTLGTALVDMYSKCGN 139
              V+ +EV+MVS+++       +  G+  H Y+ RN     M V   TAL+DMY+KCG+
Sbjct: 218 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 277

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGG-------------------------------LAMN 168
           +  A   F G+ ++ V +WT++I G                                A  
Sbjct: 278 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQA 337

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPW 225
              +++  LF  M+ +GVRP +VT VS+L  C V G ++ G+    + D  R E  ++  
Sbjct: 338 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE--VDCI 395

Query: 226 LEHYGCLVDLYGRAGRLDEA 245
           L     LVD+Y + G ++ A
Sbjct: 396 LN--TALVDMYAKCGDINAA 413



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 9/271 (3%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN ++  Y +  + R AL+++  ++  D +++     SVL AC  +     G+  H ++ 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           +  L   V +G AL+ MY +C  +  A   F  M ER+V +W+++I  L+ N   + +LE
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDL 235
           L   M    VRP+EV  VS++        +  G+  H   +R        +     L+D+
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA- 294
           Y + G L  A  + N +  K    +W A++  C      E     +R L +  T+N    
Sbjct: 272 YAKCGHLGLARQLFNGLTQKT-VVSWTAMIAGCIRSNRLE----EARALFD-STQNRDVM 325

Query: 295 -YVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
            +  + + YA++   D+  N+   M+  GV+
Sbjct: 326 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 356


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 304/441 (68%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      +I+A A+ G V  AR +FDEMPER+ ++W+AM+ GY Q G  REAL +F  MQ
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ ++  +V VL+AC  LGAL+QG+W H Y++ N ++MTV LGTALVDMY+KCG + 
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             M+ F GMK++NV  WT++I GLAM+G G  SL LFS M+ +GV+P+++ F+  L  C 
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV++GRE F+SM   YGI+P +EHYGC+VDL  R G L EA D++ KMPMKP A  W
Sbjct: 338 HTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIW 397

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GAL+  CR +KN E+ E   +  +ELE    GAYVLL NIY+ S        +R +M+ K
Sbjct: 398 GALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREK 457

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYD 380
           GV+K PGCS +E+   +H+F  GD +HPR  +I     EI  R++L  GYV +   V+ D
Sbjct: 458 GVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLD 517

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           IEEEE E  L +HSEK+AIAF LIS ++ +PIRIVKNLRVC DCH VTK+ISKV+ REII
Sbjct: 518 IEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREII 577

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDR RFH FK+G CSCK YW
Sbjct: 578 VRDRTRFHLFKDGTCSCKDYW 598


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/461 (50%), Positives = 315/461 (68%), Gaps = 3/461 (0%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDP--IAWNAM 60
           A+LG   +CQ +  G  E D++ QT ++   AK G V+ AR +FD M ER+   + WN M
Sbjct: 46  AQLGEAFHCQIMKMGF-EYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTM 104

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ Y QCG+   A+ +F  MQ  +VK  EV+MVS+LSAC HLGALD G W H YI   RL
Sbjct: 105 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL 164

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K+ V LG AL+DMY KCG +  A+D F G+  +N++ W S+I GL MNG GE+++  F +
Sbjct: 165 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 224

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ G++P+ VTFV +L GC   GL+  G+ +F  M   YG+EP +EHYGC+VDL GRAG
Sbjct: 225 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 284

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EAL++I  MPMKP++   G+LL AC+++K+T++GE  +++L+EL+  + G YV LSN
Sbjct: 285 YLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSN 344

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA    WD V   R++M  +GV K PGCS IEV+  VHEF AGD +HP++ +I   L E
Sbjct: 345 LYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDE 404

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I++ LK  G+V NT  V++DIEEEEKE  +  HSE++A+AFGL+S   G  IR+VKNLR 
Sbjct: 405 IAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRT 464

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+IS  F REIIVRDR RFHHF+ G CSC  YW
Sbjct: 465 CSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 5/193 (2%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G   + L  +  M  +DV  ++ S   +L +C   G    G   H  I +   +  + 
Sbjct: 7   ESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMI 66

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKER--NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           L T L+D Y+K G + +A + F  M ER  N  TW ++I      G    ++ +F  M+ 
Sbjct: 67  LQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQS 126

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRL 242
             V+P EVT VS+L  C  +G ++ G      +R +   I+  L +   L+D+Y + G L
Sbjct: 127 ENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGN--ALIDMYCKCGAL 184

Query: 243 DEALDVINKMPMK 255
           + A+DV + +  K
Sbjct: 185 EAAIDVFHGLSRK 197


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/440 (51%), Positives = 312/440 (70%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV+  TA+++     G VD ARK F +MPERD ++W AM+ GY +    +EAL LF  MQ
Sbjct: 196 DVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQ 255

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K +E +MVSVL+AC  LGAL+ G W   YI++N++K    +G AL+DMY KCGN+ 
Sbjct: 256 TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVE 315

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  + +R+ +TWT+++ GLA+NG GE++L +FS M +A V P+EVT+V VL  C 
Sbjct: 316 MALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACT 375

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G+V+EG++ F SM   +GIEP + HYGC+VDL G+AG L EA ++I  MPMKP++  W
Sbjct: 376 HTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVW 435

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACR++K+ EM E A  +++ELE  N   YVL  NIYA    WD++  +RQ+M  +
Sbjct: 436 GALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDR 495

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK PGCS+IE++  VHEF AGD++HP+  EI   L +++  LK+AGY  NT+ V  DI
Sbjct: 496 GIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDI 555

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EE+KE+ + +HSEK+AIAFGLI+   GV IRIVKNLR+C DCH V K++SKV++RE+IV
Sbjct: 556 AEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIV 615

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR RFHHF+ G CSCK YW
Sbjct: 616 RDRTRFHHFRHGSCSCKDYW 635



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 58/295 (19%)

Query: 24  VCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           + Q  ++S C   + GD+  AR++FD +PE    +WN M  GY++    +  + L+  M 
Sbjct: 47  IIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEML 106

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC---- 137
             +VK +  +   +    T   AL  GR  H ++ +  L   V    AL++MYS C    
Sbjct: 107 ERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLID 166

Query: 138 --------------------------------------------GNMNKAMDFFWGMKER 153
                                                       G ++ A  +F  M ER
Sbjct: 167 MARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPER 226

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG---R 210
           +  +WT++I G       +++L LF  M+ + ++P+E T VSVL  C  +G +E G   R
Sbjct: 227 DHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIR 286

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + D  + +   + ++ +   L+D+Y + G ++ AL + N +P +     W A++
Sbjct: 287 TYID--KNKVKNDTFVGN--ALIDMYFKCGNVEMALSIFNTLPQRDKF-TWTAMV 336


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/461 (48%), Positives = 326/461 (70%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+A  G +   Q VFD +   DV+  T++++  A  G +DLARK FD++PERD ++W AM
Sbjct: 252 MFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAM 311

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY +  +  EAL LF  MQ+ +VK +E +MVS+L+AC HLGAL+ G W   YI++N +
Sbjct: 312 IDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSI 371

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K    +G AL+DMY KCGN+ KA   F  M  ++ +TWT++I GLA+NG GE++L +FS 
Sbjct: 372 KNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSN 431

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +A + P+E+T++ VL  C   G+VE+G+  F SM  ++GI+P + HYGC+VDL GRAG
Sbjct: 432 MIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAG 491

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL+EA +VI  MP+KP++  WG+LL ACR++KN ++ E+A+++++ELE +N   YVLL N
Sbjct: 492 RLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCN 551

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA  K W+ +  VR++M  +G+KK PGCS++E++  V+EF AGD++HP+  EI   L  
Sbjct: 552 IYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLEN 611

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + + L  AGY  +T+ V  D+ EE+KE  L +HSEK+AIA+ LIS   G+ IRIVKNLR+
Sbjct: 612 MMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRM 671

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH + K++S+ +NRE+IVRD+ RFHHF+ G CSC  +W
Sbjct: 672 CVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 33/277 (11%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + ++  Q A I   + C  VDLARK+FD     + + WN ML+GY +  + +++  LF  
Sbjct: 139 DSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIE 198

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V  N V++V +LSAC+ L  L+ G+  + YI    ++  + L   L+DM++ CG 
Sbjct: 199 MEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGE 258

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE--------------------------- 172
           M++A   F  MK R+V +WTS++ G A  G  +                           
Sbjct: 259 MDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRM 318

Query: 173 ----KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
               ++L LF  M+ + V+P+E T VS+L  C  +G +E G E   +   +  I+     
Sbjct: 319 NRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYIDKNSIKNDTFV 377

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              L+D+Y + G + +A  V  +M  K     W A++
Sbjct: 378 GNALIDMYFKCGNVGKAKKVFKEMHHKDKF-TWTAMI 413



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 137/305 (44%), Gaps = 7/305 (2%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D + Q  +I+ C   + G +  AR++FD +P+     WN M+ GY++    +  + ++ L
Sbjct: 38  DPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLL 97

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   ++K +  +   +L   T   AL  G+    +  ++     + +  A + M+S C  
Sbjct: 98  MLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRL 157

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F       V TW  ++ G       +KS  LF  M++ GV PN VT V +L  
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  +E G+  +  +     +E  L     L+D++   G +DEA  V + M  +    
Sbjct: 218 CSKLKDLEGGKHIYKYINGGI-VERNLILENVLIDMFAACGEMDEAQSVFDNMKNRD-VI 275

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           +W +++     + N    +LA +   ++  +++ ++  + + Y     +   + + + M+
Sbjct: 276 SWTSIVTG---FANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQ 332

Query: 320 AKGVK 324
              VK
Sbjct: 333 MSNVK 337


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/461 (50%), Positives = 321/461 (69%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAE G +     +F+G+    +   T++IS   + G VD AR +FD MPERD IAW AM
Sbjct: 205 MYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAM 264

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G+ R+AL  F  MQI  V+ +E +MVSV++AC  LGAL+ G WA +Y+ R  +
Sbjct: 265 IDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGI 324

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           KM V +G AL+DMYSKCG++ +A+D F  M  R+ +TWT++I GLA+NG GE+++++F  
Sbjct: 325 KMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYR 384

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +A   P+EVTFV VL  C   GLV++GRE F SM   Y I P + HYGCL+D+ GRAG
Sbjct: 385 MLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAG 444

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L EALD I+KMPMKP++  WG LL +CR+Y N+E+GELA+ +L+EL+  N  AY+LLSN
Sbjct: 445 KLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSN 504

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA+S  W  V  +RQI+  KG+KK PGCS+IE++  +HEF A D +HP   EI   L  
Sbjct: 505 MYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLEN 564

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L+ AGYV +   V+ ++ EEEK+  L  HSEK+A+ F L++ +  V IRIVKNLR+
Sbjct: 565 VLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIRIVKNLRM 624

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+  K+ISK++ RE+IVRDR RFHHF+ G CSCK YW
Sbjct: 625 CLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 32/274 (11%)

Query: 54  PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
           P+ WNA+++G+ + G+   +   F  M         V+ VSVLSAC     L  G   H 
Sbjct: 126 PVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHK 185

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
            +  + +     +  ALVDMY++CG+M+ A   F GM+ R++ +WTSVI GL  +G  ++
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDR 245

Query: 174 -------------------------------SLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
                                          +LE F  M+   VR +E T VSV+  C  
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQ 305

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
           +G +E G      M R  GI+  +     L+D+Y + G ++ ALDV   M  +       
Sbjct: 306 LGALETGEWARIYMGR-LGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTA 364

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            +L      +  E  ++  R L  L+T +   +V
Sbjct: 365 IILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFV 398


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/461 (49%), Positives = 313/461 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAE   +G   KVFDG+    VV  T+++S  A+ G VD AR +FD MPERD ++W AM
Sbjct: 167 MYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAM 226

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY    + REAL +F  MQ  +V  +E +MVSV++AC  LGAL+ G W  VY+ R  +
Sbjct: 227 IDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGI 286

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           KM   +G AL+DMYSKCG++ +A+D F GM  R+ +TWT++I GLA+NG  E+++E+F  
Sbjct: 287 KMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHR 346

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +    P+EVTF+ VL  C   GLV++GRE F SM   Y I P + HYGC++DL GRAG
Sbjct: 347 MIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAG 406

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           ++ EALD I++MPM P++  WG LL ACR++ N+E+GEL + +L+EL+ +N   Y+LLSN
Sbjct: 407 KITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSN 466

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+   W+ V  +R  +  KG+KK PGCS+IE+D  +HEF AGD++HP   EI   L  
Sbjct: 467 IYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLES 526

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I   L   GY  +   V  ++ E+EK+  L  HSEK+AIAF L+S K    IRIVKNLR+
Sbjct: 527 IISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRM 586

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+  K+IS+++ RE++VRDR RFHHF+ G CSCK YW
Sbjct: 587 CLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 35/232 (15%)

Query: 54  PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD--QGRWA 111
           P+AWNA+++G+ + G+  E+   F  M         V+ VSVLSAC   G  D   G   
Sbjct: 87  PVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK-GTRDVLLGMQV 145

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  +  + +   + +  ALVDMY++C +M  A   F GM+ R+V +WTS++ GLA  G  
Sbjct: 146 HGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQV 205

Query: 172 E-------------------------------KSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           +                               ++LE+F  M+ + V  +E T VSV+  C
Sbjct: 206 DEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITAC 265

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             +G +E G      M R+ GI+        L+D+Y + G ++ ALDV   M
Sbjct: 266 AQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKGM 316


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/462 (50%), Positives = 323/462 (69%), Gaps = 5/462 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQ-TAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           Y   G +   +++F+G+ +  ++    AMIS  ++CG V++AR+ FDEM ERD I+W+AM
Sbjct: 214 YLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAM 273

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G   EAL +FH MQ   ++  +  + SVLSAC +LGALDQGRW H Y +RN +
Sbjct: 274 IDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI 333

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   LGT+LVDMY+KCG ++ A + F  M  + V +W ++IGGLAM+G  E +++LFS 
Sbjct: 334 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSK 393

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M    + PNE+TFV VL  C   GLV++G   F+SMR+EYG+EP +EHYGC+VDL GRAG
Sbjct: 394 MD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 450

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA  V++ +P +P    WGALL ACR + N E+GE   + L+ELE +N G Y LLSN
Sbjct: 451 LLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSN 510

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDR-EVHEFFAGDETHPRYNEIEVMLG 359
           IYA++  W+ V  VR++MK +G+K  PG S+I++ R EVH+F  GD +HP+  +I  ML 
Sbjct: 511 IYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLD 570

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++  RL++ GY  + + V++DI+EEEKE  + +HSEK+AI FGLI+   G  IRIVKNLR
Sbjct: 571 KVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLR 630

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH  TK+IS+V+NREIIVRDR R+HHF+ G CSCK +W
Sbjct: 631 VCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 37/297 (12%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYAQCG 68
           +VFD + +P+V     MI  C +  +   A  ++ EM       +   + A+L   +  G
Sbjct: 92  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 151

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL--------DQG------------ 108
              E + +   +  H +  +   + S +      G L        D+G            
Sbjct: 152 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 211

Query: 109 ----RWAHVYIERNRL-----KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
               R+  V   R        +  ++   A++  +S+CG +  A +FF  MKER+  +W+
Sbjct: 212 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWS 271

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRR 218
           ++I G    G   ++LE+F  M++  +RP +    SVL  C  +G +++GR  H  + R 
Sbjct: 272 AMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRN 331

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
              ++  L     LVD+Y + GR+D A +V  KM  K    +W A++    M+   E
Sbjct: 332 SIQLDGVLG--TSLVDMYAKCGRIDLAWEVFEKMSNK-EVSSWNAMIGGLAMHGRAE 385


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/439 (52%), Positives = 313/439 (71%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
            V  +A++    KCG   LAR +F++MPE++   WN M+ G+ +     EAL LF+ MQ+
Sbjct: 273 TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQL 332

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             VK ++V+M S+L ACTHLGAL+ G+W HVYIE+ ++++ V LGTALVDMY+KCG++  
Sbjct: 333 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 392

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           AM  F  M E++V TWT++I GLAM G G K+LELF  M+ + V+P+ +TFV VL  C  
Sbjct: 393 AMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 452

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            GLV EG  +F+SM  +YGI+P +EHYGC+VD+ GRAGR+ EA D+I  MPM P      
Sbjct: 453 AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV 512

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
            LL+ACR++ N  + E A+++L+EL+ KN G YVLLSNIY+  KNW+    +R++M  + 
Sbjct: 513 GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERN 572

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           +KK PGCS IEV   VHEF  GD +HP+ +EI   L ++ RRLK AGYV + + V++D++
Sbjct: 573 IKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMD 632

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           E+EKE+ L  HSEK+AIAFGL+S   G PIR+VKNLRVC DCH   K IS+V+NREIIVR
Sbjct: 633 EKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVR 692

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           DRNRFHHF +G CSC+ +W
Sbjct: 693 DRNRFHHFTKGSCSCRDFW 711



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   Q  +++  + CG +  ARK+FD+M  +  ++W  M+  YAQ     EA+ LF  M+
Sbjct: 171 DAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRME 230

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           I  VK NE+++V+VL+AC     L+  +  H YI+   +     L +AL+D+Y KCG   
Sbjct: 231 IASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYP 290

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A D F  M E+N++ W  +I G   +   E++L LF+ M+ +GV+ ++VT  S+L  C 
Sbjct: 291 LARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACT 350

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +E G+     + +E  IE  +     LVD+Y + G ++ A+ V  +MP K     W
Sbjct: 351 HLGALELGKWLHVYIEKE-KIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK-DVMTW 408

Query: 262 GALL 265
            AL+
Sbjct: 409 TALI 412



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D    + +++ CA    G +  AR +F+++P       N+++ GY      R+A+  + L
Sbjct: 71  DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 130

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +  +  +  S+  +C   G L +G+  H +  +        +   L++MYS CG 
Sbjct: 131 MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 187

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M  ++V +W ++IG  A      ++++LF  M+ A V+PNE+T V+VL  
Sbjct: 188 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA 247

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C     +E  ++    +  E GI         L+D+Y + G    A D+ NKMP K +  
Sbjct: 248 CARSRDLETAKQVHKYI-DETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEK-NLF 305

Query: 260 AWGALLN 266
            W  ++N
Sbjct: 306 CWNIMIN 312



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 32/151 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +    +VF  + E DV+  TA+I   A C                        
Sbjct: 383 MYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC------------------------ 418

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                  G+  +AL LFH MQ+ +VK + ++ V VL+AC+H G +++G  + +    +  
Sbjct: 419 -------GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYG 471

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           ++ ++     +VDM  + G + +A D    M
Sbjct: 472 IQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM 502


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/462 (50%), Positives = 323/462 (69%), Gaps = 5/462 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQ-TAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           Y   G +   +++F+G+ +  ++    AMIS  ++CG V++AR+ FDEM ERD I+W+AM
Sbjct: 215 YLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAM 274

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G   EAL +FH MQ   ++  +  + SVLSAC +LGALDQGRW H Y +RN +
Sbjct: 275 IDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI 334

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   LGT+LVDMY+KCG ++ A + F  M  + V +W ++IGGLAM+G  E +++LFS 
Sbjct: 335 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSK 394

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M    + PNE+TFV VL  C   GLV++G   F+SMR+EYG+EP +EHYGC+VDL GRAG
Sbjct: 395 MD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 451

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA  V++ +P +P    WGALL ACR + N E+GE   + L+ELE +N G Y LLSN
Sbjct: 452 LLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSN 511

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDR-EVHEFFAGDETHPRYNEIEVMLG 359
           IYA++  W+ V  VR++MK +G+K  PG S+I++ R EVH+F  GD +HP+  +I  ML 
Sbjct: 512 IYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLD 571

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++  RL++ GY  + + V++DI+EEEKE  + +HSEK+AI FGLI+   G  IRIVKNLR
Sbjct: 572 KVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLR 631

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH  TK+IS+V+NREIIVRDR R+HHF+ G CSCK +W
Sbjct: 632 VCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 37/297 (12%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM----PERDPIAWNAMLAGYAQCG 68
           +VFD + +P+V     MI  C +  +   A  ++ EM       +   + A+L   +  G
Sbjct: 93  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSG 152

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL--------DQG------------ 108
              E + +   +  H +  +   + S +      G L        D+G            
Sbjct: 153 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 212

Query: 109 ----RWAHVYIERNRL-----KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
               R+  V   R        +  ++   A++  +S+CG +  A +FF  MKER+  +W+
Sbjct: 213 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWS 272

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRR 218
           ++I G    G   ++LE+F  M++  +RP +    SVL  C  +G +++GR  H  + R 
Sbjct: 273 AMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRN 332

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
              ++  L     LVD+Y + GR+D A +V  KM  K    +W A++    M+   E
Sbjct: 333 SIQLDGVLG--TSLVDMYAKCGRIDLAWEVFEKMSNK-EVSSWNAMIGGLAMHGRAE 386


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/461 (50%), Positives = 323/461 (70%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA +G +   +++FD + E ++V   +M++   KCG+V+ A  +F EMP RD ++WN+ML
Sbjct: 302 YAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSML 361

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A YAQCGK  EAL LF  M+   VK  E ++VS+LSAC HLGALD+G   H YI  NR++
Sbjct: 362 ACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIE 421

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           +   +GTALVDMY+KCG ++ A   F  M+ ++V  W ++I G+A++G  +++ +LF  M
Sbjct: 422 VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEM 481

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K+AGV PN++TFV++L  C   G+V+EG++  D M   YGIEP +EHYGC++DL  RAG 
Sbjct: 482 KEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGF 541

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA+++I  MPM+P+  A GALL  CR++ N E+GE+  ++L+ L+  + G Y+LLSNI
Sbjct: 542 LEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNI 601

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA +K WD    VR +MK  G+ K+PG SVIE+   VH F AGD +HP  N+I   L EI
Sbjct: 602 YAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEI 661

Query: 362 SRRLKLA-GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
             RLK A GY A+T  V+ D+EEE+KE  L  HSEK+AIA+GL+ L     IRIVKNLRV
Sbjct: 662 HTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRV 721

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V K+ISKV+ REIIVRDRNRFHHF++G+CSC  +W
Sbjct: 722 CRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 13/283 (4%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
            G L +   V  G  E D    +++I   A   D+  A+++F+    RD ++WNAM+ GY
Sbjct: 213 FGLLVHTHVVKSGF-ECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGY 271

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMT 123
            +  +   A  +F  M   DV    +S  ++++    +G +D+  R      ERN +   
Sbjct: 272 VKHVEMGHARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWN 327

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             L       + KCGN+  A   F  M  R+V +W S++   A  G   ++L LF  M+ 
Sbjct: 328 SMLAG-----FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRA 382

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV+P E T VS+L  C  +G +++G  H  +   +  IE        LVD+Y + G++ 
Sbjct: 383 VGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 441

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
            A  V N M  K    AW  ++    ++ N +  +   +++ E
Sbjct: 442 LATQVFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 483



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A+ +F  +    P  +N+++   +      EAL L+H M    +K + ++   V+ AC  
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
                 G   H ++ ++  +    + ++L+ +Y+   ++  A   F     R+V +W ++
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I G   +     +  +F  M    V  + +++ +++ G  +VG ++E +  FD M     
Sbjct: 268 IDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMP---- 319

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            E  L  +  ++  + + G +++A  + ++MP +    +W ++L AC
Sbjct: 320 -ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSML-AC 363


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/436 (52%), Positives = 304/436 (69%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+I   +KCGD+D AR +F+ + E+D I+WN M+ GY+     +EAL LF  MQ  +V+
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-LGTALVDMYSKCGNMNKAMD 145
            N+V+ VS+L AC +LGALD G+W H YI++  L +T T L T+L+DMY+KCGN+  A  
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F GMK +++ +W ++I GLAM+G    +LELF  M+  G  P+++TFV VL  C   GL
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           VE GR+ F SM  +Y I P L+HYGC++DL GRAG  DEA  ++  M MKP    WG+LL
Sbjct: 483 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++ N E+GE A++ L ELE +N GAYVLLSNIYA +  WD V  +R  +  KG+KK
Sbjct: 543 GACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PGCS IEVD  VHEF  GD+ H +  +I  ML EI + L+ AG+V +T+ V+YD++EE 
Sbjct: 603 VPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEW 662

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE +L  HSEK+AIAFGLIS K    IRIVKNLRVC +CH   K+ISK+FNREII RDRN
Sbjct: 663 KEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRN 722

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSC  YW
Sbjct: 723 RFHHFKDGSCSCMDYW 738



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/278 (38%), Positives = 168/278 (60%), Gaps = 3/278 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G LGY + VF      D V  TA+I+     G +D AR++F+E+P RD ++WNAM
Sbjct: 176 MYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAM 235

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ G+  EAL  F  M+  +V  NE +MV+VLSAC   G+L+ G W   +IE + L
Sbjct: 236 IAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGL 295

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L  AL+DMYSKCG+++KA D F G+ E+++ +W  +IGG +   + +++L LF  
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK 355

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+Q+ V PN+VTFVS+L  C  +G ++ G+     + +++        +  L+D+Y + G
Sbjct: 356 MQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCG 415

Query: 241 RLDEALDVINKMPMKPHA-GAWGALLNACRMYKNTEMG 277
            ++ A  V     MKP + G+W A+++   M+ +  M 
Sbjct: 416 NIEAAKQVFAG--MKPKSLGSWNAMISGLAMHGHANMA 451



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 35/273 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           + Q +  G+H       + +I  CA    G++  A  +F+ + + +   WN M+ G +  
Sbjct: 52  HSQIIKTGLHNTQFAL-SKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLS 110

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
                A+  +  M +  V+ N  +   +L +C  +GA  +G+  H ++ +  L+    + 
Sbjct: 111 SSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVH 170

Query: 128 TALVDMYSKCGN-------------------------------MNKAMDFFWGMKERNVY 156
           T+L++MY++ G                                ++ A   F  +  R+  
Sbjct: 171 TSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAV 230

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W ++I G A +G  E++L  F  MK+A V PNE T V+VL  C   G +E G     S 
Sbjct: 231 SWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN-WVRSW 289

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
             ++G+   L     L+D+Y + G LD+A D+ 
Sbjct: 290 IEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF 322


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/435 (52%), Positives = 305/435 (70%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++   AKCG++D AR++FD M  RD +AW+AM++GY Q  + REAL +F+ MQ  +V 
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N+V+MVSVLSAC  LGAL+ G+W H YI R  L +TV LGTALVD Y+KCG +  A+  
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKA 430

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  RN +TWT++I G+A NG   ++LELFS M +A + P +VTF+ VL  C    LV
Sbjct: 431 FESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLV 490

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEGR HF SM ++YGI P +EHYGC+VDL GRAG +DEA   I  MP++P+A  W ALL+
Sbjct: 491 EEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLS 550

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           AC ++KN E+GE A +++V L+  + G Y+LLSN YA    W     VR+ MK KGV+K+
Sbjct: 551 ACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKI 610

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS+IE++  + EFFA D  HP+  EI   + E+   +K+ GY+ NT     D++E EK
Sbjct: 611 PGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEK 670

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           + ++  HSEK+AIAFGL+  + G  IR+ KNLRVC DCH  TK+ISKV+NREIIVRDRNR
Sbjct: 671 QVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNR 730

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  YW
Sbjct: 731 FHHFKDGLCSCNDYW 745



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 4/245 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     ++I   A CGDV  A  +F  +  +  IAWNAM+AGY + G  +E + +F  M 
Sbjct: 205 DQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGML 264

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 +EV+++SV +AC  LG  + G+W   Y E   +  +  L TALVDMY+KCG ++
Sbjct: 265 EVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELD 324

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA   F  M  R+V  W+++I G   +    ++L +F+ M+   V PN+VT VSVL  C 
Sbjct: 325 KARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
           V+G +E G+     +RR+    P     G  LVD Y + G + +A+     MP++ +   
Sbjct: 385 VLGALETGKWVHSYIRRKD--LPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR-NTWT 441

Query: 261 WGALL 265
           W AL+
Sbjct: 442 WTALI 446



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 3/218 (1%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           P R   ++N ++  + + G   +ALHLF  ++    V  ++ ++ + + +C+ +  L  G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           R    Y  +    +   +  +L+ MY+ CG++  A   F  ++ + V  W ++I G   N
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G  ++ +E+F  M +     +EVT +SV   C  +G    G +       E G+      
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRNL 309

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
              LVD+Y + G LD+A  + ++M  +    AW A+++
Sbjct: 310 ATALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMIS 346



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 20/175 (11%)

Query: 3   AELGCLGYCQKVFDGIHEPD----VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A LG L   + V   I   D    V+  TA++   AKCG +  A K F+ MP R+   W 
Sbjct: 384 AVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWT 443

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           A++ G A  G+SREAL LF  M   +++  +V+ + VL AC+H   +++GR       R+
Sbjct: 444 ALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGR-------RH 496

Query: 119 RLKMTVTLGT--------ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
              MT   G          +VD+  + G +++A  F   M  E N   W +++  
Sbjct: 497 FTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/460 (48%), Positives = 320/460 (69%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G L   + +F  +   ++     MI+  AK G++  ARK+FDEM ERD I+W++M+
Sbjct: 207 YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMV 266

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GY   G+ +EAL +F  MQ  + +     + SVL+AC+++GA+DQGRW H Y++RN +K
Sbjct: 267 DGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIK 326

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           +   LGTAL+DMY+KCG ++   + F  MKER ++TW ++IGGLA++G  E +LELFS +
Sbjct: 327 LDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKL 386

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           ++  ++PN +T V VL  C   G V++G   F +MR  YG++P LEHYGC+VDL GR+G 
Sbjct: 387 QEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGL 446

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
             EA D+IN MPMKP+A  WGALL ACR++ N ++ E   + L+ELE +N G YVLLSNI
Sbjct: 447 FSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNI 506

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA+   +D V  +R++MK +G+K +PG S+++++  VHEF  GD +HP+  EI   L  I
Sbjct: 507 YAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKII 566

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             RL++AG+  +T+ V++DI+EEEKE  +  HSEK+AIAFGLI+   G  I IVKNLRVC
Sbjct: 567 KERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVC 626

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH  TK+IS++F+REIIVRDR R+HHFK G CSCK +W
Sbjct: 627 DDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 128/318 (40%), Gaps = 66/318 (20%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
           + D A K+F  +P  +   WN ++ G  +  K  +A++ +  M I D + N+ +  ++  
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFK 140

Query: 98  ACTHLGALDQGRWAH-----------VYIERNRLKMTVTLG------------------- 127
           AC+   A+ +GR  H           V+I+   ++M  + G                   
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCW 200

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG------------------ 169
             ++D Y KCG +  A   F  M  +N+ +W  +I GLA  G                  
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 170 -----------AG--EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDS 215
                      AG  +++LE+F  M++   RP      SVL  C  +G +++GR  H   
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            R    ++  L     L+D+Y + GRLD   +V  +M  +     W A++    ++   E
Sbjct: 321 KRNSIKLDAVLG--TALLDMYAKCGRLDMGWEVFEEMKER-EIFTWNAMIGGLAIHGRAE 377

Query: 276 MGELASRKLVELETKNHG 293
                  KL E   K +G
Sbjct: 378 DALELFSKLQEGRMKPNG 395


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/460 (48%), Positives = 320/460 (69%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G L   + +F  +   ++     MI+  AK G++  ARK+FDEM ERD I+W++M+
Sbjct: 207 YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMV 266

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GY   G+ +EAL +F  MQ  + +     + SVL+AC+++GA+DQGRW H Y++RN +K
Sbjct: 267 DGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIK 326

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           +   LGTAL+DMY+KCG ++   + F  MKER ++TW ++IGGLA++G  E +LELFS +
Sbjct: 327 LDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKL 386

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           ++  ++PN +T V VL  C   G V++G   F +MR  YG++P LEHYGC+VDL GR+G 
Sbjct: 387 QEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGL 446

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
             EA D+IN MPMKP+A  WGALL ACR++ N ++ E   + L+ELE +N G YVLLSNI
Sbjct: 447 FSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNI 506

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA+   +D V  +R++MK +G+K +PG S+++++  VHEF  GD +HP+  EI   L  I
Sbjct: 507 YAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKII 566

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             RL++AG+  +T+ V++DI+EEEKE  +  HSEK+AIAFGLI+   G  I IVKNLRVC
Sbjct: 567 KERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVC 626

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH  TK+IS++F+REIIVRDR R+HHFK G CSCK +W
Sbjct: 627 DDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 127/318 (39%), Gaps = 66/318 (20%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
           + D A K+F  +P  +   WN ++ G  +  K  +A++ +  M I D + N+ +  ++  
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFK 140

Query: 98  ACTHLGALDQGRWAH-----------VYIERNRLKMTVTLG------------------- 127
           AC+   A+ +GR  H           V+I+   + M  + G                   
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCW 200

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG------------------ 169
             ++D Y KCG +  A   F  M  +N+ +W  +I GLA  G                  
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 170 -----------AG--EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDS 215
                      AG  +++LE+F  M++   RP      SVL  C  +G +++GR  H   
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            R    ++  L     L+D+Y + GRLD   +V  +M  +     W A++    ++   E
Sbjct: 321 KRNSIKLDAVLG--TALLDMYAKCGRLDMGWEVFEEMKER-EIFTWNAMIGGLAIHGRAE 377

Query: 276 MGELASRKLVELETKNHG 293
                  KL E   K +G
Sbjct: 378 DALELFSKLQEGRMKPNG 395


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/444 (52%), Positives = 312/444 (70%), Gaps = 4/444 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   QT++IS  +  G VD+AR +F  MPER+ I+W+ M+ GY +CG+ +EAL LF  MQ
Sbjct: 98  DPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQ 157

Query: 82  ---IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
              ++DV+ NE +M  VL+AC  LGAL+ G+WAH YI++  + + V LGTAL+DMY+KCG
Sbjct: 158 MLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCG 217

Query: 139 NMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           ++ KA   F  +   ++V  W+++I GLAM+G  E+ + LFS M   GVRPN VTF++V 
Sbjct: 218 SVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVF 277

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLV EG+++   M  +Y I P ++HYGC+VDLYGRAGR+ EA +V+  MPM+P 
Sbjct: 278 CACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPD 337

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              WGALL+  RM+ + E  ELA +KL+ELE  N GAYVLLSN+YA+   W+ V +VR +
Sbjct: 338 VLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDL 397

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M+  G+KK+PGCS+IEV   +HEFF GD++HP   +I +ML EI  RLK+ GYV NT  V
Sbjct: 398 METMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEV 457

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           + D++EE KE  L  HSEK+A+A+G +    G PIRIVKNLR+C DCH   KMISKVF+R
Sbjct: 458 LLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDR 517

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EIIVRD NRFHHF +G CSC+ YW
Sbjct: 518 EIIVRDCNRFHHFTQGLCSCRDYW 541



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 9/234 (3%)

Query: 50  PERDPIAWNAMLAGYAQC-----GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           P  +   WN ++  + Q      G +   + +F  M+ H V+ +  +   +L +      
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           L  GR  H  I R  L +   + T+L+ MYS  G ++ A + F  M ERNV +W+ +I G
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139

Query: 165 LAMNGAGEKSLELFSLMKQAG---VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
               G  +++L LF  M+  G   VRPNE T   VL  C  +G +E G+     + +  G
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDK-CG 198

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           +   +     L+D+Y + G +++A  V + +       AW A+++   M+   E
Sbjct: 199 MPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAE 252


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/462 (51%), Positives = 318/462 (68%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNA 59
           MY+  GCL   +KVFD +    VV    MI A A+      A K+F  M    +   WN 
Sbjct: 119 MYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNI 178

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ G+ +     EAL LF+ MQ+  VK ++V+M S+L ACTHLGAL+ G+W HVYIE+ +
Sbjct: 179 MINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEK 238

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++ V LGTALVDMY+KCG++  AM  F  M E++V TWT++I GLAM G G K+LELF 
Sbjct: 239 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH 298

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+ + V+P+ +TFV VL  C   GLV EG  +F+SM  +YGI+P +EHYGC+VD+ GRA
Sbjct: 299 EMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRA 358

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           GR+ EA D+I  MPM P       LL+ACR++ N  + E A+++L+EL+ KN G YVLLS
Sbjct: 359 GRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLS 418

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIY+  KNW+    +R++M  + +KK PGCS IEV   VHEF  GD +HP+ +EI   L 
Sbjct: 419 NIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLD 478

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++ RRLK AGYV + + V++D++E+EKE+ L  HSEK+AIAFGL+S   G PIR+VKNLR
Sbjct: 479 DMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLR 538

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH   K IS+V+NREIIVRDRNRFHHF +G CSC+ +W
Sbjct: 539 VCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 39/278 (14%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D    + +++ CA    G +  AR +F+++P       N+++ GY      R+A+  + L
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +  +  +  S+  +C   G L +G+  H +  +        +   L++MYS CG 
Sbjct: 69  MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 125

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLA---------------------------MNGAGE 172
           +  A   F  M  ++V +W ++IG  A                           +NG  E
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185

Query: 173 KS-----LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
            S     L LF+ M+ +GV+ ++VT  S+L  C  +G +E G+     + +E  IE  + 
Sbjct: 186 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE-KIEVDVA 244

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               LVD+Y + G ++ A+ V  +MP K     W AL+
Sbjct: 245 LGTALVDMYAKCGSIESAMRVFQEMPEK-DVMTWTALI 281


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/441 (51%), Positives = 304/441 (68%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      +I+A A+ G +  AR +FDEMP R+ ++W+AM+ GY Q G  REAL +F  MQ
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             DV+ ++  +V VL+AC   GAL+QG+W H Y++ + +K+ +  GTALVDMYSKCG + 
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQ 261

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            AMD F  M+ +NV  WT++I GLAM+G G +++ LF+ M+ +G+RP+++ F+ VL  C 
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACT 321

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV++GRE FDSM R+YGI+P +EHYGC+VDL  R G L EA ++I KMPM+P A  W
Sbjct: 322 HAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIW 381

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GAL+  CR +KN E  E  ++  + LE    GAYVLLSNIYA S        +R +M+ K
Sbjct: 382 GALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREK 441

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYD 380
           GV K PGCS +EV+  +H+F  GD +HPR  +I     EI  R++L  GY+ +   V+ D
Sbjct: 442 GVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLD 501

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           IEEEEKE  L +HSEK+AIAF LIS+ + +PIRI KNLRVC DCH VTK+ISKV+ REI+
Sbjct: 502 IEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIV 561

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDR RFH FKEG CSCK YW
Sbjct: 562 VRDRTRFHLFKEGTCSCKDYW 582


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/463 (48%), Positives = 324/463 (69%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   QK+FD + E DV   T M+   AK GD D AR +F+ MP ++  AWN +
Sbjct: 271 MYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVL 330

Query: 61  LAGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y Q GK +EAL +F+ +Q+  + K +EV++VS LSAC  LGA+D G W HVYI+R  
Sbjct: 331 ISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREG 390

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           + +   L ++LVDMY+KCG++ KA++ F+ ++ER+VY W+++I GL M+G G+ +++LF 
Sbjct: 391 IVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFF 450

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++A V+PN VTF +VL  C   GLV+EGR  F  M   YG+ P ++HY C+VD+ GRA
Sbjct: 451 EMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRA 510

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L+EA+++IN+M   P A  WGALL AC ++ N E+GELAS +L++LE +NHGA VLLS
Sbjct: 511 GFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLS 570

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA++  W++V  +R++M+   +KK PGCS IE +  VHEF  GD THP  + I   L 
Sbjct: 571 NIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLE 630

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI+ +LK  GY  N + ++  IEE++ KE  L  HSEK+AIAFGL++L    PIR+VKNL
Sbjct: 631 EIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNL 690

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH   K++S+V++R+I++RDR RFHHF++G CSC  YW
Sbjct: 691 RICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 146/282 (51%), Gaps = 34/282 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    +++     CGD+ +A ++F  +  +D ++WN+M++ +AQ     +AL LF  M+
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +V  N V+MV VLSAC     L+ GRW   YIER  +K+ +TL  A++DMY+KCG+++
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLA-------------------------------MNGA 170
            A   F  M ER+V++WT ++ G A                                NG 
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGK 339

Query: 171 GEKSLELFSLMKQAGV-RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
            +++L +F+ ++ + + +P+EVT VS L  C  +G ++ G      ++RE GI       
Sbjct: 340 PKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLI 398

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
             LVD+Y + G L++AL+V   +  +     W A++    M+
Sbjct: 399 SSLVDMYAKCGSLEKALEVFYSVEER-DVYVWSAMIAGLGMH 439



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 137/289 (47%), Gaps = 10/289 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-H 78
           +P    +    SA +    +D AR +FD++P+ +   WN ++  YA      ++  +F  
Sbjct: 56  DPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLD 115

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           L+   +   N+ +   V+ A + L A   G   H    +    M + +  +LV  Y  CG
Sbjct: 116 LLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACG 175

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +++ A   F G+  ++V +W S+I   A     E +LELF  M++  V PN VT V VL 
Sbjct: 176 DLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLS 235

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C     +E GR     + R+ GI+  L     ++D+Y + G +D+A  + ++MP +   
Sbjct: 236 ACAKKLDLEFGRWVCSYIERK-GIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPER-DV 293

Query: 259 GAWGALLNACRMYKNTEMGELASRKLV--ELETKNHGAYVLLSNIYAES 305
            +W  +L+        +MG+  + +LV   +  K   A+ +L + Y ++
Sbjct: 294 FSWTIMLDG-----YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQN 337


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/464 (49%), Positives = 315/464 (67%), Gaps = 4/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G   + ++ FD I +PD+    A+I A AK G + +ARK+FD+MPE++ I+W+ M
Sbjct: 104 MYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCM 163

Query: 61  LAGYAQCGKSREALHLFHLMQI---HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           + GY  CG+ + AL LF  +Q      ++ NE +M SVLSAC  LGAL  G+W H YI++
Sbjct: 164 IHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDK 223

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLE 176
             +K+ V LGT+L+DMY+KCG++ +A   F  +  E++V  W+++I   +M+G  E+ LE
Sbjct: 224 TGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLE 283

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF+ M   GVRPN VTFV+VL  C   GLV EG E+F  M  EYG+ P ++HYGC+VDLY
Sbjct: 284 LFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLY 343

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            RAGR+++A +V+  MPM+P    WGALLN  R++ + E  E+A  KL+EL+  N  AYV
Sbjct: 344 SRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYV 403

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSN+YA+   W  V ++R +M+ +G+KKLPGCS++EVD  + EFFAGD +HP    + V
Sbjct: 404 LLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYV 463

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
           ML EI +RL+  GY  NT  V+ D++EE KE  L  HSEK+AIA+  +    G  IRIVK
Sbjct: 464 MLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVK 523

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           NLR+C DCH   K+ISK FNREIIVRD NRFHHFK G CSCK Y
Sbjct: 524 NLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/458 (50%), Positives = 313/458 (68%), Gaps = 1/458 (0%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   +C  +  G  E +V   TA+++    C  V  AR++FDE+P+R+ ++WNA++ G
Sbjct: 159 ELGKAIHCCIIQMGF-ESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITG 217

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y      R+ + +F  MQI   K  EV+MV VL AC HLGAL+QGRW   YI+ NRL++ 
Sbjct: 218 YNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLN 277

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V +GTAL+DMY+KCG +++A   F  M+ +NVYTW  +I G AMNG GE +L+ FS M  
Sbjct: 278 VFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIM 337

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
              +P+EVTF+ VL  CC  GLV EGR +F SM+ E+G+ P +EHYGC+VDL GRAG LD
Sbjct: 338 EKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLD 397

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           EA  +I  M M+P    W  LL ACR++ N ++GE A +KL+ELE  N   YVLL+N+YA
Sbjct: 398 EAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYA 457

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
             + WD+V  VR++M  + V+K+PGCS IE+D  V+EF   +   P + E+  +L ++++
Sbjct: 458 RDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNK 517

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           +LKLAGYVA+T    YDIEEEEKE +L  HSEK+A+AFGL+    G+ +RIVKNLR+C D
Sbjct: 518 KLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQD 577

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH   K++SKV+ R+I VRDRNRFHHF  G CSCK YW
Sbjct: 578 CHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 8/231 (3%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+  Y    K   ++ ++  M  + +  +  +  +VL +   L   + G+  H  I +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
              +  V + TALV+MY  C +++ A   F  + +RN+ +W ++I G   N    K +++
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPWLEHYGCLVD 234
           F  M+ AG +P EVT V VL  C  +G + +GR   ++ D  R    +         L+D
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVG----TALID 286

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285
           +Y + G +DEA  +   M +K +   W  L++   M    E    A  +++
Sbjct: 287 MYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMI 336


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/435 (51%), Positives = 303/435 (69%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+I   +KCGD+  AR++FD+M ERD I+WN M+ GY      +EAL LF  M    V+
Sbjct: 300 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
             E++ +S+L +C HLGA+D G+W H YI +N   ++ +L T+L+D+Y+KCGN+  A   
Sbjct: 360 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQV 419

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F GMK +++ +W ++I GLAM+G  +K+ ELFS M   G+ PNE+TFV +L  C   GLV
Sbjct: 420 FDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLV 479

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           + G++ F SM ++Y I P  +HYGC++DL GRAG  +EA  ++  M +KP    WG+LL 
Sbjct: 480 DLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLG 539

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR +   E+GEL + +L ELE  N GAYVLLSNIYA +  WD V  +R  +  +G+KK+
Sbjct: 540 ACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKV 599

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGC+ IEVD  VHEF  GD+ HP+  +I  ML E+  +LK+ G+VA+T+ V+YD++EE K
Sbjct: 600 PGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWK 659

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSEK+AIAFGLIS K G PIRI+KNLRVC +CH  TK+ISK+FNREII RDRNR
Sbjct: 660 EGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNR 719

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  YW
Sbjct: 720 FHHFKDGSCSCNDYW 734



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 2/275 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   Q VFD  +  D +  TA+I+  A  G +D AR++FDEMP +D ++WNAM
Sbjct: 173 MYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAM 232

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ G+S+EAL LF  M+  +V  NE ++VSVLSAC    ALD G     +IE   L
Sbjct: 233 IAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGL 292

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L  AL+DMYSKCG++  A + F  M ER+V +W  +IGG     + +++L LF  
Sbjct: 293 CSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFRE 352

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M  +GV P E+TF+S+L  C  +G ++ G+     + + +           L+DLY + G
Sbjct: 353 MLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS-TSLSTSLIDLYAKCG 411

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            +  A  V + M +K  A +W A++    M+   +
Sbjct: 412 NIVAARQVFDGMKIKSLA-SWNAMICGLAMHGQAD 445



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 38/257 (14%)

Query: 30  ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
            SA ++ GD+  A  +F+ + E +   WN+M+ G +       AL  F  M    V+ N 
Sbjct: 70  FSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNS 129

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF-- 147
            +   +L +C  L +  +G+  H ++ +      V + T+L++MY++ G MN A   F  
Sbjct: 130 YTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQ 189

Query: 148 ------------------WGMKER-----------NVYTWTSVIGGLAMNGAGEKSLELF 178
                             WG  +R           +V +W ++I G A  G  +++L LF
Sbjct: 190 SNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLF 249

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR---REYGIEPWLEHYGCLVDL 235
             M++A V PNE T VSVL  C     ++ G    +SMR    + G+   L+    L+D+
Sbjct: 250 EDMRKANVPPNESTIVSVLSACAQSNALDLG----NSMRSWIEDRGLCSNLKLVNALIDM 305

Query: 236 YGRAGRLDEALDVINKM 252
           Y + G L  A ++ + M
Sbjct: 306 YSKCGDLQTARELFDDM 322


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/461 (49%), Positives = 320/461 (69%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY     L   ++VFD + + DVV  T++I+  ++ G VD AR++F+ MPER+ ++WNAM
Sbjct: 164 MYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAM 223

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A Y Q  +  EA  LF  M++ +V L++    S+LSACT LGAL+QG+W H YIE++ +
Sbjct: 224 IAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGI 283

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   L T ++DMY KCG + KA + F  + ++ + +W  +IGGLAM+G GE ++ELF  
Sbjct: 284 ELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKE 343

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++  V P+ +TFV+VL  C   GLVEEG+ +F  M    G++P +EH+GC+VDL GRAG
Sbjct: 344 MEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAG 403

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA  +IN+MP+ P AG  GAL+ ACR++ NTE+GE   +K++ELE  N G YVLL+N
Sbjct: 404 LLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLAN 463

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA +  W+ V  VR++M  +GVKK PG S+IE +  V EF AG   HP+  EI   L E
Sbjct: 464 LYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDE 523

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I   ++  GYV +T+ V++DI+EEEKE+ L  HSEK+AIAFGL+  K G  +RI KNLR+
Sbjct: 524 ILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRI 583

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  +K+ISKV++REII+RDRNRFHHF+ G CSCK YW
Sbjct: 584 CRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 133/298 (44%), Gaps = 36/298 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D + +     A +K GD++ A ++FD++P  D   +N +  GY +   +R  + ++  M 
Sbjct: 53  DAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRML 112

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER-----------NRLKMTVTLG--- 127
              V  N+ +   ++ AC    A+++G+  H ++ +           N + M V      
Sbjct: 113 HKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLE 172

Query: 128 -----------------TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
                            T+L+  YS+ G ++KA + F  M ERN  +W ++I     +  
Sbjct: 173 QARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNR 232

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
             ++  LF  M+   V  ++    S+L  C  +G +E+G+     + +  GIE   +   
Sbjct: 233 LHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS-GIELDSKLAT 291

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
            ++D+Y + G L++A +V N++P K    +W  ++    M+     GE A     E+E
Sbjct: 292 TVIDMYCKCGCLEKASEVFNELPQKG-ISSWNCMIGGLAMHGK---GEAAIELFKEME 345


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/435 (51%), Positives = 304/435 (69%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T++I   AKCG VD ARK+FDEM +RD +AW+AM++GYAQ  + +EAL+LFH MQ  +V 
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY 320

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            NEV+MVSVL +C  LGA + G+W H YI++ ++K+TVTLGT L+D Y+KCG ++++++ 
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  +NV+TWT++I GLA NG G+ +LE FS M +  V+PN+VTF+ VL  C    LV
Sbjct: 381 FKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLV 440

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           ++GR  F+SMRR++ IEP +EHYGC+VD+ GRAG L+EA   I+ MP  P+A  W  LL 
Sbjct: 441 DQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLA 500

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           +CR +KN EM E +   +  LE  + G Y+LLSN YA     +  I VR ++K K +KK+
Sbjct: 501 SCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKI 560

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS+IE+D  VHEFF+ D  H    EI   L ++ +++K  GYV NT+    + EEE K
Sbjct: 561 PGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESK 620

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E ++  HSEK+AIA+GLI       IRI KNLR+C DCH+ TK IS+VF R IIVRDRNR
Sbjct: 621 ETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNR 680

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  YW
Sbjct: 681 FHHFKDGLCSCNDYW 695



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 4/242 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +  +I   A CG + +AR +FD MPER  +AWN+ML+GY + G   E + LF  +    +
Sbjct: 159 ENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRI 218

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + ++V+M+SVL AC  L  L+ G     YI    L+   TL T+L+DMY+KCG ++ A  
Sbjct: 219 EFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARK 278

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M +R+V  W+++I G A     +++L LF  M++  V PNEVT VSVL  C ++G 
Sbjct: 279 LFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGA 338

Query: 206 VEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
            E G+  HF   +++  +   L     L+D Y + G +D +++V  +M  K +   W AL
Sbjct: 339 YETGKWVHFYIKKKKMKLTVTLGTQ--LIDFYAKCGYIDRSVEVFKEMSFK-NVFTWTAL 395

Query: 265 LN 266
           + 
Sbjct: 396 IQ 397



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 11/249 (4%)

Query: 23  VVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++ +  + SA     D +D A  +F+ + + +  A+N M+ G A       AL LF  M 
Sbjct: 54  IITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMH 113

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ ++ +  SVL AC+ + AL +G   H  I ++  K    +   L+ MY+ CG + 
Sbjct: 114 EKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIG 173

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F GM ER++  W S++ G   NG  ++ ++LF  + +  +  ++VT +SVL  C 
Sbjct: 174 VARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACG 233

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLDEALDVINKMPMKPH 257
            +  +E G      +  EY +   L         L+D+Y + G++D A  + ++M  K  
Sbjct: 234 RLANLEIGE-----LIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD-KRD 287

Query: 258 AGAWGALLN 266
             AW A+++
Sbjct: 288 VVAWSAMIS 296



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   T +I   AKCG +D + ++F EM  ++   W A++ G A  G+ + AL  F  M  
Sbjct: 358 VTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLE 417

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMN 141
           +DVK N+V+ + VLSAC+H   +DQGR     + R+  ++  +     +VD+  + G + 
Sbjct: 418 NDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLE 477

Query: 142 KAMDFFWGMK-ERNVYTWTSVIGGLAMNG---AGEKSLELFSLMKQA 184
           +A  F   M    N   W +++     +      EKSLE  + ++ A
Sbjct: 478 EAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPA 524


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/461 (49%), Positives = 309/461 (67%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAM 60
           Y +LG +   + +FD     DVV   A+I    K   +  A+++F  M   R+ + WN M
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTM 176

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ Y QCG+   A+ +F  MQ  +VK  EV+MVS+LSAC HLGALD G W H YI   RL
Sbjct: 177 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL 236

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K+ V LG AL+DMY KCG +  A+D F G+  +N++ W S+I GL MNG GE+++  F +
Sbjct: 237 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 296

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ G++P+ VTFV +L GC   GL+  G+ +F  M   YG+EP +EHYGC+VDL GRAG
Sbjct: 297 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 356

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EAL++I  MPMKP++   G+LL AC+++K+T++GE  +++L+EL+  + G YV LSN
Sbjct: 357 YLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSN 416

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA    WD V   R++M  +GV K PGCS IEV+  VHEF AGD +HP++ +I   L E
Sbjct: 417 LYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDE 476

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I++ LK  G+V NT  V++DIEEEEKE  +  HSE++A+AFGL+S   G  IR+VKNLR 
Sbjct: 477 IAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRT 536

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+IS  F REIIVRDR RFHHF+ G CSC  YW
Sbjct: 537 CSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 13/255 (5%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           A+LG   +CQ +  G  E D++ QT ++   AK GD+  A+++F  MP RD +A NAM++
Sbjct: 26  AQLGEAFHCQIMKMGF-EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMIS 84

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
             ++ G   EA +LF  M     + N  S  S+++    LG ++  R   +  + N +K 
Sbjct: 85  ALSKHGYVEEARNLFDNM----TERNSCSWNSMITCYCKLGDINSAR---LMFDCNPVKD 137

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
            V+   A++D Y K   +  A + F  M   RN  TW ++I      G    ++ +F  M
Sbjct: 138 VVSW-NAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQM 196

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAG 240
           +   V+P EVT VS+L  C  +G ++ G      +R +   I+  L +   L+D+Y + G
Sbjct: 197 QSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGN--ALIDMYCKCG 254

Query: 241 RLDEALDVINKMPMK 255
            L+ A+DV + +  K
Sbjct: 255 ALEAAIDVFHGLSRK 269



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
           +DV  ++ S   +L +C   G    G   H  I +   +  + L T L+D Y+K G++  
Sbjct: 4   NDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKC 63

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F GM  R+V    ++I  L+ +G  E++  LF  M +     N  ++ S++   C 
Sbjct: 64  AKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITCYCK 119

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
           +G +   R  FD    +  +  W      ++D Y ++ +L  A ++   M    ++  W 
Sbjct: 120 LGDINSARLMFDCNPVK-DVVSW----NAIIDGYCKSKQLVAAQELFLLMGSARNSVTWN 174

Query: 263 ALLNA 267
            +++A
Sbjct: 175 TMISA 179


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/442 (50%), Positives = 305/442 (69%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E + V   A+++  AKCG+V+ A K+F+ MP+++ +AWNA+++GY+Q G   EAL LF  
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIE 413

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +K +  ++VSVL AC H  AL+QG+  H Y  R+  +  V +GT LVD+Y+KCGN
Sbjct: 414 MQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGN 473

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A   F  M E++V +WT++I    ++G GE +L LFS M++ G + + + F ++L  
Sbjct: 474 VNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTA 533

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV++G ++F  M+ +YG+ P LEHY CLVDL GRAG LDEA  +I  M ++P A 
Sbjct: 534 CSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDAN 593

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL ACR++ N E+GE A++ L EL+  N G YVLLSNIYAE++ W+ V  +R++MK
Sbjct: 594 VWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMK 653

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KGVKK PGCSV+ V R+V  F  GD THP+  +I  ML  +  +++ AGYV NTN  + 
Sbjct: 654 EKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQ 713

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEE KE+ L  HSEK+AI+FG+I+   G+PIRI+KNLRVC DCH+ TK ISK+  REI
Sbjct: 714 DVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREI 773

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHH K G CSC  YW
Sbjct: 774 IVRDANRFHHVKNGFCSCGDYW 795



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/248 (38%), Positives = 155/248 (62%), Gaps = 4/248 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV+  TA+ S   KCG ++ AR++FD MP+RD ++WNA++AGY+Q G+  EAL LF  
Sbjct: 152 ESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSE 211

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ++ +K N  ++VSV+  C HL AL+QG+  H Y  R+ ++  V +   LV+MY+KCGN
Sbjct: 212 MQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGN 271

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A   F  M  R+V +W ++IGG ++N    ++L  F+ M+  G++PN +T VSVL  
Sbjct: 272 VNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPA 331

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  +E+G++ H  ++R   G E        LV++Y + G ++ A  +  +MP K + 
Sbjct: 332 CAHLFALEQGQQIHGYAIRS--GFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNV 388

Query: 259 GAWGALLN 266
            AW A+++
Sbjct: 389 VAWNAIIS 396



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 176/319 (55%), Gaps = 6/319 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           E G   +C  +  GI E DV+    +++  AKCG+V+ A K+F+ MP RD  +WNA++ G
Sbjct: 238 EQGKQIHCYAIRSGI-ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGG 296

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y+   +  EAL  F+ MQ+  +K N ++MVSVL AC HL AL+QG+  H Y  R+  +  
Sbjct: 297 YSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESN 356

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             +G ALV+MY+KCGN+N A   F  M ++NV  W ++I G + +G   ++L LF  M+ 
Sbjct: 357 DVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQA 416

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            G++P+    VSVL  C     +E+G++ H  ++R   G E  +     LVD+Y + G +
Sbjct: 417 QGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS--GFESNVVVGTGLVDIYAKCGNV 474

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLLSNI 301
           + A  +  +MP +    +W  ++ A  ++ + E       K+ E  TK +H A+  +   
Sbjct: 475 NTAQKLFERMP-EQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTA 533

Query: 302 YAESKNWDRVINVRQIMKA 320
            + +   D+ +   Q MK+
Sbjct: 534 CSHAGLVDQGLQYFQCMKS 552



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 12/244 (4%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERD-PIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V  T  +SACA        +  F +   R+  + W   + GY + G   +AL L++ MQ 
Sbjct: 61  VKTTREVSACAN-------QTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQR 113

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +  +++  +SV+ AC     L  GR  H  I     +  V +GTAL  MY+KCG++  
Sbjct: 114 TGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLEN 173

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  M +R+V +W ++I G + NG   ++L LFS M+  G++PN  T VSV+  C  
Sbjct: 174 ARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAH 233

Query: 203 VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           +  +E+G++ H  ++R   GIE  +     LV++Y + G ++ A  +  +MP++  A +W
Sbjct: 234 LLALEQGKQIHCYAIRS--GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVA-SW 290

Query: 262 GALL 265
            A++
Sbjct: 291 NAII 294



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G +   QK+F+ + E DVV  T MI A                            
Sbjct: 467 IYAKCGNVNTAQKLFERMPEQDVVSWTTMILA---------------------------- 498

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
              Y   G   +AL LF  MQ    KL+ ++  ++L+AC+H G +DQG ++         
Sbjct: 499 ---YGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYG 555

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           L   +     LVD+  + G++++A      M  E +   W +++G 
Sbjct: 556 LAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGA 601


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/439 (51%), Positives = 303/439 (69%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           VV  T ++    KCG V LAR +FD+  E++  +WN M+ G+ +     EAL LF  MQ 
Sbjct: 222 VVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQT 281

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K ++V+M S+L ACTHLGAL+ G+W H YI++ R+ + V LGTALVDMY+KCG++  
Sbjct: 282 KGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIET 341

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A+  F  M E++V TWT++I GLAM G  E +L+ F  M   GV+P+ +TFV VL  C  
Sbjct: 342 AIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSH 401

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            G V+EG  HF+SM   YGI+P +EHYG LVD+ GRAGR+ EA ++I  MPM P     G
Sbjct: 402 AGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLG 461

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
            LL ACR++ N E  E A+++L+E++  + G YVLLSNIY  SK W+     R++M  +G
Sbjct: 462 GLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERG 521

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           ++K PGCS IEV   VHEF  GD +H + +EI  ML ++  +LK AGYV + + V++D+ 
Sbjct: 522 MRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMA 581

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           EEEKE  L  HSEK+AIAFGL+S   G PIR+VKNLR+C DCH  TK+ISK++NREIIVR
Sbjct: 582 EEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVR 641

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           DRNRFHHFK+G CSC+G+W
Sbjct: 642 DRNRFHHFKDGTCSCRGFW 660



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 138/245 (56%), Gaps = 3/245 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLM 80
           D   Q  +++  + CG +  ARK+FD+M ++  ++W  M+  +AQ  +  EA+ LF  +M
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  +VK NEV++V+VL+AC     L   +  H YI+ +     V L T L+D+Y KCG +
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A D F   +E+N+++W  +I G   +   E++L LF  M+  G++ ++VT  S+L  C
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             +G +E G+     ++++  I+  +     LVD+Y + G ++ A+ V ++MP K     
Sbjct: 299 THLGALELGKWLHAYIKKQR-IDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKD-VMT 356

Query: 261 WGALL 265
           W AL+
Sbjct: 357 WTALI 361



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   TA++   AKCG ++ A ++F EMPE+D + W A++ G A CG++  AL  F  M 
Sbjct: 322 DVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMH 381

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           I  VK + ++ V VL+AC+H G +D+G    +   +   ++ T+     LVD+  + G +
Sbjct: 382 IKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRI 441

Query: 141 NKAMDFFWGM 150
            +A +    M
Sbjct: 442 AEAEELIKSM 451



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 15/275 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P    +     +  + G +  AR +F ++P       N+++ G       +EAL  +  
Sbjct: 19  DPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQE 78

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +  +  +  S+  +C +     +G+  H +  +            L++MYS CG 
Sbjct: 79  MMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGC 135

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLR 198
           +  A   F  M+++ V +W ++IG  A      +++ LF  +MK   V+PNEVT V+VL 
Sbjct: 136 LVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLT 195

Query: 199 GCCV---VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C     + +V+   E+ D    E+G    +     L+D+Y + G +  A D+ +K   K
Sbjct: 196 ACARARDLAMVKRIHEYID----EHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEK 251

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
            +  +W  ++N      N E   L  R   E++TK
Sbjct: 252 -NLFSWNIMINGHVEDSNYEEALLLFR---EMQTK 282


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/443 (48%), Positives = 310/443 (69%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISA-CAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           + D+  Q  M+   C   G ++ ARK+FDEMP+ DP+ W AM+ GYA+ G+S  A+ LF 
Sbjct: 141 DDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFR 200

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQI  V  ++V+MVSVLSACT LGAL+ G+W   YIE+ R+  TV L  ALVDM++KCG
Sbjct: 201 KMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCG 260

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +++KA+  F  M +R + +WTSVI GLAM+G G +++ LF  MK +G+ P ++ F+ +L 
Sbjct: 261 DVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLS 320

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVE GR++F  M R++GI P +EHYGC+VDL  RAG + EAL+ + +MP++P+ 
Sbjct: 321 ACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNP 380

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  L++ACR++   ++GE  S++L+  E  +   YVLLSNIY +  +W++   +R  M
Sbjct: 381 IIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAM 440

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
             KG++K+PG ++IE+D E+HEF  GD +H +YNEI  M+ E+ R +K AGY   T  V 
Sbjct: 441 GKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVF 500

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            DI+EE+KED L +HSEK+AIAF L++   G PIRI KNLRVC DCH  +K ISK++NRE
Sbjct: 501 LDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNRE 560

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I++RDR+RFHHF++G+CSC  +W
Sbjct: 561 IVMRDRSRFHHFRDGQCSCGDFW 583



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 4/221 (1%)

Query: 53  DPIAWNAMLAGYAQCGKSR-EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111
           D   ++ ++  YA+  +S+  A+  ++LM  + +  N+ +   VL AC  L  L+ G+  
Sbjct: 72  DAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAV 131

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKC-GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
           H  + +      + +   +V MY  C G M  A   F  M + +  TWT++IGG A  G 
Sbjct: 132 HGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQ 191

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
              ++ LF  M+ AGV P++VT VSVL  C  +G +E G+     + +E  ++  +E   
Sbjct: 192 SAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKT-VELSN 250

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            LVD++ + G +D+AL +   M  K    +W +++    M+
Sbjct: 251 ALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMH 290


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/453 (49%), Positives = 322/453 (71%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+A  G +   + VFD +   DV+  T++++  A    +DLARK FD+MPERD ++W AM
Sbjct: 284 MFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAM 343

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY +  + +E L LF  MQ+ +VK +E +MVS+L+AC HLGAL+ G WA  YI++N++
Sbjct: 344 IDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKI 403

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K    +G AL+DMY KCGN+ KA   F  M++++ +TWT++I GLA NG GE++L +FS 
Sbjct: 404 KNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSY 463

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +A V P+E+T++ V+  C  VGLV +G+  F +M  ++GI+P L HYGC+VDL GRAG
Sbjct: 464 MLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAG 523

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EAL+VI  MP+KP++  WG+LL ACR++KN ++ E+A+ +++ELE +N   YVLL N
Sbjct: 524 HLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCN 583

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA  K W  + NVR++M  +G+KK+PGCS++E++  V+EF AGD++HP+  EI   L  
Sbjct: 584 IYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLEN 643

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + + L  AGY  +T+ V  D+ EE+KE  L  HSEK+AIA+ LIS  +GV IRIVKNLR+
Sbjct: 644 MKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRM 703

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEG 453
           C DCH +  ++SKV+NRE+IVRD+ RFHHF+ G
Sbjct: 704 CVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 146/320 (45%), Gaps = 10/320 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAK-CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           + Q +  G+    +     +I  C K  GDV  ARK+FDE+P+     WN M+ GY++  
Sbjct: 55  HSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRIN 114

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--WAHVYIERNRLKMTVTL 126
            S   + L+ LM +H++K +  +   +L   T   AL  G+    H  I    L   + +
Sbjct: 115 CSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVI-HGFLDSNLFV 173

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-- 184
               + ++S CG +N A   F       V TW  V+ G       E+S  LF  M++   
Sbjct: 174 QKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCE 233

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            V PN VT V +L  C  +  +  G+  ++   +E  +EP L     L+D++   G +D 
Sbjct: 234 CVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDA 293

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           A  V ++M  +    +W +++     + NT   +LA +   ++  +++ ++  + + Y  
Sbjct: 294 ARGVFDEMKTRD-VISWTSIVTG---FANTCRIDLARKYFDQMPERDYVSWTAMIDGYLR 349

Query: 305 SKNWDRVINVRQIMKAKGVK 324
              +  V+ + + M+   VK
Sbjct: 350 MNRFKEVLTLFRDMQMSNVK 369


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/462 (50%), Positives = 315/462 (68%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA    LG  +++F+     DVV   AMI    K  ++  AR +FD M  RD I+WN M
Sbjct: 210 LYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTM 269

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYA CGK  EAL LF  M+   VK  E ++VS+LSAC HLGALD+G   H YI  NR+
Sbjct: 270 INGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRI 329

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   +GTALVDMY+KCG ++ A   F  M+ ++V  W ++I G+A++G  +++ +LF  
Sbjct: 330 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKE 389

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+AGV PN++TFV++L  C   G+V+EG++  D M   YGIEP +EHYGC++DL  RAG
Sbjct: 390 MKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAG 449

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA+++I  MPM+P+  A GALL  CR++ N E+GE+  ++L+ L+  + G Y+LLSN
Sbjct: 450 FLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSN 509

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +K WD    VR +MK  G+ K+PG SVIE+   VH F AGD +HP  N+I   L E
Sbjct: 510 IYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNE 569

Query: 361 ISRRLKLA-GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           I  RLK A GY A+T  V+ D+EEE+KE  L  HSEK+AIA+GL+ L     IRIVKNLR
Sbjct: 570 IHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLR 629

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K+ISKV+ REIIVRDRNRFHHF++G+CSC  +W
Sbjct: 630 VCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 33/276 (11%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A+ +F  +    P  +N+++   +      EAL L+H M    +K + ++   V+ AC  
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF----------WG-- 149
                 G   H ++ ++  +    + ++L+ +Y+   ++  A   F          W   
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238

Query: 150 -------------------MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
                              M  R+V +W ++I G A+ G   ++L LF  M+  GV+P E
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTE 298

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T VS+L  C  +G +++G  H  +   +  IE        LVD+Y + G++  A  V N
Sbjct: 299 ATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 357

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
            M  K    AW  ++    ++ N +  +   +++ E
Sbjct: 358 AMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 392


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/453 (50%), Positives = 316/453 (69%), Gaps = 1/453 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA +G +   +++FD + E ++V   +M+S   KCG+V+ A  +F EMP RD ++WN+ML
Sbjct: 107 YAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSML 166

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A YAQCGK  EAL LF  M+   VK  E ++VS+LSAC HLGALD+G   H YI  NR++
Sbjct: 167 ACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIE 226

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           +   +GTALVDMY+KCG ++ A   F  M+ ++V  W ++I G+A++G  +++ +LF  M
Sbjct: 227 VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEM 286

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K+A V PN++TFV++L  C   G+V+EG++  D M   YGIEP +EHY C++DL  RAG 
Sbjct: 287 KEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGL 346

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA+++I  MPM+P+  A GALL  CR++ N E+GE+  ++L+ L+  + G Y+LLSNI
Sbjct: 347 LEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNI 406

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA +K WD    VR +MK  G+ K+PG SVIE+   VH F AGD +HP  N+I   L EI
Sbjct: 407 YAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEI 466

Query: 362 SRRLKLA-GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
             RLK A GY A+T  V+ D+EEE+KE  L  HSEK+AIA+GL+ L     IRIVKNLRV
Sbjct: 467 HTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRV 526

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEG 453
           C DCH VTK+ISKV+ REIIVRDRNRFHHF++G
Sbjct: 527 CRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 13/262 (4%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
            G L +   V  G  E D     ++I   A   D+  A+++F    +RD ++WNAM+ GY
Sbjct: 18  FGLLVHTHVVKSGF-ECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGY 76

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMT 123
            + G+      +F  M   DV    +S  ++++    +G +D+  R      ERN +   
Sbjct: 77  VKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSW- 131

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
                +++  + KCGN+ +A   F  M  R+V +W S++   A  G   ++L LF  M+ 
Sbjct: 132 ----NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRA 187

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV+P E T VS+L  C  +G +++G  H  +   +  IE        LVD+Y + G++ 
Sbjct: 188 VGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 246

Query: 244 EALDVINKMPMKPHAGAWGALL 265
            A  V N M  K    AW  ++
Sbjct: 247 LATQVFNAMESK-DVLAWNTII 267


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 210/425 (49%), Positives = 311/425 (73%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G ++ ARK+FDEM + D ++W+AM+ GY + G+S +A++LF  MQI  V  +E++MVSVL
Sbjct: 63  GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
           SACT LGAL+ G+W   Y+E+ R++  V L  AL+DM++KCG+++KA + F  M+ERN+ 
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIV 182

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +WTSVIGGLAM+G G +++ +F  M ++GV P++V F+ +L  C   GLV++G+ +FDSM
Sbjct: 183 SWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSM 242

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
           R+++ I P +EHYGC+VD+  RAG + EAL  + +MP+ P+   W  L+NACR +   ++
Sbjct: 243 RKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKL 302

Query: 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDR 336
           GE  +R+L+  E  +   YVLLSNIYA+  +W++   +R+ M  KG+KK+PG ++IE+D 
Sbjct: 303 GEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDN 362

Query: 337 EVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEK 396
           E++EF AGD++H +  EI  M+ E+ + +K AGY+  T  V+ DI++E+KEDTL +HSEK
Sbjct: 363 EIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEK 422

Query: 397 VAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCS 456
           +AIAF L++   G  IRIVKNLRVC DCH  +K ISK++NREI+VRDRNRFHHFK G CS
Sbjct: 423 LAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCS 482

Query: 457 CKGYW 461
           C+ +W
Sbjct: 483 CRDFW 487



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 6/188 (3%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC----GNMNKA 143
           N+ +   VL AC  +G L+ G+  H  + +      V +   LV MY  C    G +  A
Sbjct: 9   NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFA 68

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M + +  +W+++IGG    G    ++ LF  M+  GV P+E+T VSVL  C  +
Sbjct: 69  RKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGL 128

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G +E G+   +S   +  ++  +E    L+D++ + G +D+A ++   M  + +  +W +
Sbjct: 129 GALELGK-WVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER-NIVSWTS 186

Query: 264 LLNACRMY 271
           ++    M+
Sbjct: 187 VIGGLAMH 194


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/468 (50%), Positives = 323/468 (69%), Gaps = 7/468 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGD---VDLARKMFDEMPERDPIAW 57
           MYA  G +   +K+FD     D V   ++++   K GD   V  A K+F+EM E+D ++W
Sbjct: 173 MYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSW 232

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           +A+++GY Q G   EAL +F  M  + ++L+EV +VSVLSAC HL  +  G+  H  + R
Sbjct: 233 SALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR 292

Query: 118 NRLKMTVTLGTALV----DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
             ++  V L  AL+    DMY KCG +  A++ F GM+E+ V +W ++I GLA+NG  E+
Sbjct: 293 MGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVER 352

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           SL++FS MK  GV PNE+TF+ VL  C  +GLV+EGR HF SM  ++GIEP ++HYGC+V
Sbjct: 353 SLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMV 412

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           DL GRAG L+EA  +I  MPM P    WGALL AC+ + +TEMGE   RKL+EL+  + G
Sbjct: 413 DLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDG 472

Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
            +VLLSNI+A   +W+ V+ VR +MK +GV K PGCS+IE +  VHEF AGD+THP  N+
Sbjct: 473 FHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINK 532

Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
           +E ML E+++RLK+ GY  +TN V  DI+EEEKE TL +HSEK+AIAFGL+++    PIR
Sbjct: 533 VEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIR 592

Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           I+KNLR+C DCH   K+ISK + REI+VRDR+RFH+FKEG CSC  YW
Sbjct: 593 IMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 40/265 (15%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +D + ++FD +   +   WN M+  Y Q   + +AL L+ LM  ++V  +  +   V+ A
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF----------W 148
           C        G+  H ++ +      V +   L++MY+ CGNM  A   F          W
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 198

Query: 149 G------------------------MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
                                    M E+++ +W+++I G   NG  E++L +F  M   
Sbjct: 199 NSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN 258

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV----DLYGRAG 240
           G+R +EV  VSVL  C  + +V+ G+     +    GIE ++     L+    D+Y + G
Sbjct: 259 GMRLDEVVVVSVLSACAHLSIVKTGK-MIHGLVIRMGIESYVNLQNALIHMYSDMYMKCG 317

Query: 241 RLDEALDVINKMPMKPHAGAWGALL 265
            ++ AL+V N M  K    +W AL+
Sbjct: 318 CVENALEVFNGMEEKG-VSSWNALI 341



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ ++  F  ++  N + W +++     + + EK+L L+ LM +  V P+  T+  V++ 
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C V  L   G+E  D + +  G +  +     L+++Y   G + +A  + ++ P+     
Sbjct: 139 CAVRLLEFGGKEIHDHVLK-VGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSV- 196

Query: 260 AWGALLNACRMYKNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           +W ++L      K  +MG++  A +   E++ K+  ++  L + Y ++  ++  + +   
Sbjct: 197 SWNSILAG--YVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 254

Query: 318 MKAKGVK 324
           M A G++
Sbjct: 255 MNANGMR 261


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/461 (48%), Positives = 311/461 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAE   +    K+FDG+    VV  T+++S   + G VD AR +F  MPERD ++W AM
Sbjct: 189 MYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAM 248

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q  + REAL +F  MQ  +V  +E +MVSV++AC  LGAL+ G W  VY+ R  +
Sbjct: 249 IDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGI 308

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           KM   +G AL+DMYSKCG++ +A+D F  M  R+ +TWT++I GLA+NG GE+++E+F  
Sbjct: 309 KMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHR 368

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M      P+EVTF+ VL  C   GLV++GRE F SMR  Y I P + HYGC++DL+GRAG
Sbjct: 369 MIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAG 428

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           ++ EALD I++MPM P++  WG LL ACR++ N+E+GEL + +L++++ +N   Y LLSN
Sbjct: 429 KITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSN 488

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+   W+ V  +R  +  KG+KK PGCS+IE++  +HEF AGD++HP   EI   L  
Sbjct: 489 IYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLES 548

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I   L   GY  +   V  ++ EEEK+  L  HSEK+AIAF L+S +    IRIVKNLR+
Sbjct: 549 IINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRM 608

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+  K+IS+++ RE++VRDR RFHHF+ G CSCK YW
Sbjct: 609 CLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 34/235 (14%)

Query: 51  ERD-PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH-LGALDQG 108
           ERD P+ WNA+++G+ +C +  EA   F  M         V+ VSVLSAC    G +  G
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
              H  +  + +   + +  ALVDMY++C +M  A   F GM+ R+V +WTS++ GL   
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224

Query: 169 GAGE-------------------------------KSLELFSLMKQAGVRPNEVTFVSVL 197
           G  +                               ++LE+F  M+ + V  +E T VSV+
Sbjct: 225 GRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVI 284

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             C  +G +E G      M R+ GI+        L+D+Y + G ++ ALDV   M
Sbjct: 285 TACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/435 (50%), Positives = 302/435 (69%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++    KC D+  AR +FD    RD + W AML+ YAQ     +A +LF  M+   V+
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
             +V++VS+LS C   GALD G+W H YI++ R+++   L TALVDMY+KCG++N A   
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F     R++  W ++I G AM+G GE++L++F+ M++ GV+PN++TF+ +L  C   GLV
Sbjct: 457 FIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLV 516

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EG++ F+ M   +G+ P +EHYGC+VDL GRAG LDEA ++I  MP+KP+   WGAL+ 
Sbjct: 517 TEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVA 576

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++KN ++GELA+ +L+E+E +N G  VL+SNIYA +  W     VR+ MK  G+KK 
Sbjct: 577 ACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKE 636

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PG SVIEV+  VHEF  GD++HP+   I  ML E+ R+L  AGYV +T+ V+ +I+EEEK
Sbjct: 637 PGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEK 696

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSEK+A+AFGLIS     PIRIVKNLRVC DCH  TK++SK++ R IIVRDRNR
Sbjct: 697 ETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNR 756

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF+EG CSC  YW
Sbjct: 757 FHHFREGYCSCGDYW 771



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 131/249 (52%), Gaps = 6/249 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A++    +C  V+ AR +FD+M ERD ++W+ M+   ++  +   AL L   M 
Sbjct: 128 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 187

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK--MTVTLGTALVDMYSKCGN 139
              V+ +EV+MVS+++       +  G+  H Y+ RN     M V   TAL+DMY+KCG+
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 247

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F G+ ++ V +WT++I G   +   E+  +LF  M++  + PNE+T +S++  
Sbjct: 248 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVE 307

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C   G ++ G++ H   +R  + +   L     LVD+YG+   +  A  + +    +   
Sbjct: 308 CGFTGALQLGKQLHAYILRNGFSVS--LALATALVDMYGKCSDIRNARALFDSTQNR-DV 364

Query: 259 GAWGALLNA 267
             W A+L+A
Sbjct: 365 MIWTAMLSA 373



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 16/154 (10%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D +  TA++   AKCGD++ A ++F E   RD   WNA++ G+A  G   EAL +F  
Sbjct: 431 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 490

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA--------LV 131
           M+   VK N+++ + +L AC+H G + +G+       +   KM  T G          +V
Sbjct: 491 MERQGVKPNDITFIGLLHACSHAGLVTEGK-------KLFEKMVHTFGLVPQIEHYGCMV 543

Query: 132 DMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           D+  + G +++A +    M  + N   W +++  
Sbjct: 544 DLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 577



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 2/176 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           SVL AC  +     G+  H ++ +  L   V +G AL+ MY +C  +  A   F  M ER
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           +V +W+++I  L+ N   + +LEL   M    VRP+EV  VS++        +  G+  H
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
              +R        +     L+D+Y + G L  A  + N +  K    +W A++  C
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKT-VVSWTAMIAGC 273


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/461 (50%), Positives = 307/461 (66%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +G  + +F+ + + DVV    MI+   K GD + A  +F  MPER+  +W +M
Sbjct: 172 LYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSM 231

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY QCGK++EA+HLF  M+   VK NEV++V+VL+AC  LGALD G   H Y  R+  
Sbjct: 232 IAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF 291

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K  V +   L+DMY KCG + +A   F  M+ER V +W+++IGGLAM+G  E++L LFS 
Sbjct: 292 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 351

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M Q G+ PN VTF+ +L  C  +GL+ EGR  F SM R+YGI P +EHYGC+VDL  RAG
Sbjct: 352 MSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAG 411

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA + I  MPMKP+   WGALL ACR++KN EM E A + L+EL+  N G YV+LSN
Sbjct: 412 LLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSN 471

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAE+  W+    VR+ MK + VKK PG S I VD  VHEF AG+E+HP   +I     E
Sbjct: 472 IYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEE 531

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   ++L GYV NT+ V+ DIEE EK   + +HSEK+A+ FGL++     PIRI+KNLR+
Sbjct: 532 LLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRI 591

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+IS + NREI+VRDRNRFH F +  CSC+ YW
Sbjct: 592 CEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 131/277 (47%), Gaps = 37/277 (13%)

Query: 33  CAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
           CA       A+++F  + ++ P    WN+ L   A+     +A+ LF+ ++ +DV  +  
Sbjct: 70  CAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTF 129

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK-------- 142
           +  SVL AC +L  L  GR  H  +E+   +  + L   +V +Y+ CG M +        
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM 189

Query: 143 -----------------------AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                                  A D F  M ERNV +WTS+I G    G  ++++ LF+
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M++AGV+ NEVT V+VL  C  +G ++ G R H  S R  +G +  +     L+D+Y +
Sbjct: 250 KMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR--HGFKRNVRISNTLIDMYVK 307

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            G L+EA  V  +M  +    +W A++    M+   E
Sbjct: 308 CGCLEEACKVFEEMEERT-VVSWSAMIGGLAMHGRAE 343


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/461 (50%), Positives = 307/461 (66%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +   Q++FD + E  +V  TAM++  AK G++D AR +FD M ERD + WN M
Sbjct: 168 VYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVM 227

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G   EAL LF  M     K NEV+++SVLSAC  LGAL+ GRW H YIE N +
Sbjct: 228 IDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI 287

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  V +GTALVDMYSKCG++  A   F  + +++V  W S+I G AM+G  +++L+LF  
Sbjct: 288 QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKS 347

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + G+ P  +TF+ +L  C   G V EG + F+ M+ EYGIEP +EHYGC+V+L GRAG
Sbjct: 348 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 407

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            +++A +++  M ++P    WG LL ACR++    +GE     LV+    N G Y+LLSN
Sbjct: 408 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSN 467

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA   NWD V  +R +MK  GVKK PGCS IEV+ +VHEF AG   HP+  EI +ML E
Sbjct: 468 IYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEE 527

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I+  LK  GY   T+ V++DI E EKE +L  HSEK+AIAFGLI+ + G  I+IVKNLRV
Sbjct: 528 INGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRV 587

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+VTK+ISK+  R+I+VRDRNRFHHF  G CSC  YW
Sbjct: 588 CADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 29/265 (10%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           A  G +D +  +F          W A++ G+A  G   +AL+ +  M    V+ N  +  
Sbjct: 73  ASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFS 132

Query: 94  SVLSACT-------HLGALDQGRWAHVYIERNRLKMTVTLG------------------- 127
           S+L  C        H  A+  G  + +Y+    L +    G                   
Sbjct: 133 SILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVS 192

Query: 128 -TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            TA++  Y+K G ++ A   F GM+ER+   W  +I G   NG   ++L LF  M +A  
Sbjct: 193 LTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA 252

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           +PNEVT +SVL  C  +G +E GR    S     GI+  +     LVD+Y + G L++A 
Sbjct: 253 KPNEVTVLSVLSACGQLGALESGRW-VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 311

Query: 247 DVINKMPMKPHAGAWGALLNACRMY 271
            V +K+  K    AW +++    M+
Sbjct: 312 LVFDKIDDKD-VVAWNSMIVGYAMH 335



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R+ L     L   L   Y+  G ++ ++  F   +  +V+ WT++I G A+ G  
Sbjct: 50  HAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLH 109

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
           E++L  ++ M   GV PN  TF S+L+ C     +E G+    S   + G +  L     
Sbjct: 110 EQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKA-LHSQAVKLGFDSDLYVRTG 164

Query: 232 LVDLYGRAGRLDEALDVINKMPMK 255
           L+D+Y R G +  A  + + MP K
Sbjct: 165 LLDVYARGGDVVSAQQLFDTMPEK 188


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/441 (47%), Positives = 317/441 (71%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKC-GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D+  Q  M+   + C G ++ ARK+FDEMP+ D + W+AM+ GYA+ G+S EA+ LF  M
Sbjct: 166 DIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREM 225

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q+ +V  +E++MVS+LSACT LGAL+ G+W   YIER+ +   V +  AL+DM++KCG++
Sbjct: 226 QMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDI 285

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           +KA+  F  M E+ + +WTSVI G+AM+G G+++  LF  M  +GV P++V F+ +L  C
Sbjct: 286 SKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSAC 345

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLVE GRE+F SM ++Y + P +EHYGC+VD+Y R G + EAL+ +  MP++P+   
Sbjct: 346 SHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVI 405

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
              L++ACR +   ++GE  ++ L++ E  +   YVLLSNIYA++ +W++   +R++M+ 
Sbjct: 406 LRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEV 465

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           KG+KK+PG ++IE+D E++EF AGD++H ++ EI  M+ E+ R +K +GY  +T+ V+ D
Sbjct: 466 KGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLD 525

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           I EE+KED+L +HSEK+AIAFGL+    G PIRIVKNLRVC DCH  +K ISK+++REII
Sbjct: 526 INEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREII 585

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RDRNRFHHFK G+CSC  +W
Sbjct: 586 MRDRNRFHHFKSGQCSCGDFW 606



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 8/242 (3%)

Query: 17  GIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSRE- 72
           G+H  P V+ + A IS+     D   +     E   R  D   +N ++  YAQ G S++ 
Sbjct: 56  GLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDK 115

Query: 73  ALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           AL L+ +M +HD  L N+ +   VL AC  L  L+ G+  H  + +      + +   +V
Sbjct: 116 ALALYGIM-LHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMV 174

Query: 132 DMYSKC-GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
            MYS C G +N A   F  M + +  TW+++IGG A  G   +++ LF  M+ A V P+E
Sbjct: 175 HMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDE 234

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           +T VS+L  C  +G +E G+   ++    + I   +E    L+D++ + G + +AL +  
Sbjct: 235 ITMVSMLSACTDLGALELGK-WIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFR 293

Query: 251 KM 252
            M
Sbjct: 294 AM 295


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/463 (47%), Positives = 312/463 (67%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDG-IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           MYA  G     + +FD  + +P VV  TAM++  A  G +D AR +FD +P +D + WNA
Sbjct: 430 MYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNA 489

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY Q G+  EAL LF  M    V+ +EV++V VLSA   LG ++ G+W H Y++ +R
Sbjct: 490 MIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSR 549

Query: 120 -LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            ++++V +GTAL+DMY KCG++  A+D F G+ ++++  W ++I G AM+G   K+LE+F
Sbjct: 550 RVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF 609

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
              ++ G+ P ++TF+ +L  C   G+VEEGRE F SM REYGI+P +EHYGC+VDL GR
Sbjct: 610 VQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGR 669

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG + EA  ++  M + P A  W +LL ACR++KN  +G+  +  LV     N G Y+LL
Sbjct: 670 AGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILL 729

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA   NW  V  VR +MKA G++K PGCS IE+DREV+EF AGD +HPR +EI VML
Sbjct: 730 SNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVML 789

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            +++  +K  G+V  T  V++D++E  KE  L  HSEK+A+AFGLIS + G  I+IVKNL
Sbjct: 790 DKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNL 849

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R C DCH V K+IS++  R+I+ RDRNRFHHF +G CSC  YW
Sbjct: 850 RACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 43/292 (14%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A A  G +DL+  +     +   I + + +  ++  G    AL L   M    +     +
Sbjct: 332 AYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHT 391

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN------------ 139
           + + L AC     L  GR  H Y  +  L     + TAL+ MY++ G+            
Sbjct: 392 LSASLPACR---GLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDML 448

Query: 140 --------------------MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                               ++ A   F G+  ++   W ++I G   +G   ++L LF 
Sbjct: 449 PDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFR 508

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  +GV P+EVT V VL     +G VE G+     ++    ++  +     L+D+Y + 
Sbjct: 509 RMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKC 568

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           G L +A+DV + +  K     W A++N   M+ +       SRK +E+  ++
Sbjct: 569 GSLGDAVDVFHGIGDKDIV-VWNAMINGYAMHGD-------SRKALEMFVQS 612


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/446 (49%), Positives = 310/446 (69%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +   +K+FD  +  D++   +MIS   KC  VD A+ +FD MPE+D ++W++M
Sbjct: 285 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 344

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ     E L LF  MQ+   K +E ++VSV+SAC  L AL+QG+W H YI+RN L
Sbjct: 345 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGL 404

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + V LGT L+DMY KCG +  A++ F+GM E+ + TW ++I GLAMNG  E SL++FS 
Sbjct: 405 TINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSN 464

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+  V PNE+TF+ VL  C  +GLV+EG+ HF SM  ++ I+P ++HYGC+VDL GRAG
Sbjct: 465 MKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAG 524

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L EA +++N+MPM P    WGALL AC+ + ++EMG    RKL+EL+  + G +VLLSN
Sbjct: 525 KLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSN 584

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    WD V+ +R +M    V K+PGCS+IE +  +HEF AGD+THP  + IE ML E
Sbjct: 585 IYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVE 644

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++ +LKL GY  + N V+ D++EEEKE TL +HSEK+AIAFGLI++    PIRI+KNLR+
Sbjct: 645 MAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRI 704

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNR 446
           C DCH   K+ISK F R+I+   R +
Sbjct: 705 CNDCHTAAKLISKAFCRKIVFLFRGQ 730



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 33/295 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y E+G +   + ++  + E  ++   +MI      G V  A K+FDEM E+D + W+A++
Sbjct: 154 YIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALI 213

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A + Q     EA+  F  M    V ++EV  VS LSAC +L  ++ G+  H    +   +
Sbjct: 214 ACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTE 273

Query: 122 MTVTLGTALVDMYSKCGNM-------------------------------NKAMDFFWGM 150
             + L  AL+ MYSKCG++                               + A   F  M
Sbjct: 274 SYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM 333

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            E++V +W+S+I G A N   +++L LF  M+ +G +P+E T VSV+  C  +  +E+G+
Sbjct: 334 PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 393

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                ++R  G+   +     L+D+Y + G ++ AL+V   M ++     W AL+
Sbjct: 394 WVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALI 446



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 135/314 (42%), Gaps = 62/314 (19%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  +  +I+  + C ++  A ++F+E    D ++WN++LAGY + G   EA H++H 
Sbjct: 110 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 169

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M                                   ER     ++    +++ ++   G 
Sbjct: 170 MP----------------------------------ER-----SIIASNSMIVLFGMRGL 190

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  M E+++ TW+++I     N   E+++  F  M + GV  +EV  VS L  
Sbjct: 191 VVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSA 250

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL-------DEA--LDVIN 250
           C  + +V  G+    S+  + G E ++     L+ +Y + G +       DEA  LD+I 
Sbjct: 251 CANLLVVNMGKL-IHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI- 308

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
                    +W ++++    Y    + + A      +  K+  ++  + + YA++  +D 
Sbjct: 309 ---------SWNSMISG---YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 356

Query: 311 VINVRQIMKAKGVK 324
            + + Q M+  G K
Sbjct: 357 TLALFQEMQMSGFK 370



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 116/278 (41%), Gaps = 15/278 (5%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +D  R++F+ +   +   WN M+  Y Q      A  L+  M  + +  +  +   ++ A
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C+   +  + +  H ++ +      V +   L++ +S C NM  A   F      +  +W
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
            S++ G    G  E++  ++  M +  +  +      VL G  + GLV E  + FD M  
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI--VLFG--MRGLVVEACKLFDEM-L 202

Query: 219 EYGIEPWLEHYGCLV--DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
           E  +  W     C    ++Y  A R    +  I  M  +  A    + L+AC       M
Sbjct: 203 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVA---VSALSACANLLVVNM 259

Query: 277 GELASRKLVELETKNHGAYVLLSN--IYAESKNWDRVI 312
           G+L     +++ T+   +Y+ L N  IY  SK  D ++
Sbjct: 260 GKLIHSLSLKIGTE---SYINLQNALIYMYSKCGDIMV 294


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/435 (49%), Positives = 305/435 (70%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++    KCG++  AR +FD M  +D + W AM++ YAQ      A  LF  M+ + V+
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVR 330

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            NE++MVS+LS C   GALD G+W H YI++  +++ V L TAL+DMY+KCG+++ A   
Sbjct: 331 PNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL 390

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F    +R++ TW  ++ G  M+G GEK+L+LF+ M+  GV+PN++TF+  L  C   GLV
Sbjct: 391 FSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLV 450

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EG+  F+ M  ++G+ P +EHYGC+VDL GRAG LDEA  +I  MP+ P+   WGA+L 
Sbjct: 451 VEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLA 510

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           AC+++KN+ MGELA+R+L+ LE +N G  VL+SNIYA +  W+ V  +R+ +K  G+KK 
Sbjct: 511 ACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKE 570

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PG S IEV+  VH+F  GD  HP   +I  ML E+S++LK AGY+ +T+ V+++I+EEEK
Sbjct: 571 PGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEK 630

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSEK+A+AFGLIS   G PIR+VKNLR+C DCH VTK++SK++ R IIVRDRNR
Sbjct: 631 ETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNR 690

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF+EG CSC GYW
Sbjct: 691 FHHFREGSCSCGGYW 705



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 14/289 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+E G L   + +FD + E DVV  + MI A            +F    +R  ++W AM
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYGFSQRSIVSWTAM 203

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY +C    E   LF  M   +V  N+++M+S++ +C  +GA+  G+  H YI RN  
Sbjct: 204 IAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGF 263

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            M++ L TALVDMY KCG +  A   F  MK ++V TWT++I   A     + + +LF  
Sbjct: 264 GMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQ 323

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  GVRPNE+T VS+L  C V G ++ G+  F +   + G+E  +     L+D+Y + G
Sbjct: 324 MRDNGVRPNELTMVSLLSLCAVNGALDMGK-WFHAYIDKQGVEVDVILKTALIDMYAKCG 382

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
            +  A  + ++  +      W  ++    M+     GE A +   E+ET
Sbjct: 383 DISGAQRLFSE-AIDRDICTWNVMMAGYGMHG---YGEKALKLFTEMET 427



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 26/220 (11%)

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           R AL+ +  M+  D++++   + SVL AC+ +     G+  H +  +N L   V +  AL
Sbjct: 91  RYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNAL 150

Query: 131 VDMYSKCGNMNKA----------------------MDFFWGMKERNVYTWTSVIGGLAMN 168
           + MYS+CG++  A                      +  F+G  +R++ +WT++I G    
Sbjct: 151 MQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRC 210

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLE 227
              E+   LF  M +  V PN++T +S++  C  VG V+ G R H   +R  +G+   L 
Sbjct: 211 NDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMS--LA 268

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
               LVD+YG+ G +  A  + + M  K     W A+++A
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNK-DVMTWTAMISA 307



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV+ +TA+I   AKCGD+  A+++F E  +RD   WN M+AGY   G   +AL LF  
Sbjct: 365 EVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTE 424

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   VK N+++ +  L AC+H G + +G+      I    L   V     +VD+  + G
Sbjct: 425 METLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAG 484

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            +++A      M    N+  W +++  
Sbjct: 485 LLDEAYKMIESMPVTPNIAIWGAMLAA 511


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/461 (50%), Positives = 306/461 (66%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +   Q++FD + E  +V  TAM++  AK G++D AR +FD M ERD + WN M
Sbjct: 115 VYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVM 174

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G   EAL LF  M     K NEV+++SVLSAC  LGAL+ GRW H YIE N +
Sbjct: 175 IDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI 234

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  V +GTALVDMYSKCG++  A   F  + +++V  W S+I G AM G  +++L+LF  
Sbjct: 235 QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKS 294

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + G+ P  +TF+ +L  C   G V EG + F+ M+ EYGIEP +EHYGC+V+L GRAG
Sbjct: 295 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 354

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            +++A +++  M ++P    WG LL ACR++    +GE     LV+    N G Y+LLSN
Sbjct: 355 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSN 414

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA   NWD V  +R +MK  GVKK PGCS IEV+ +VHEF AG   HP+  EI +ML E
Sbjct: 415 IYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEE 474

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I+  LK  GY   T+ V++DI E EKE +L  HSEK+AIAFGLI+ + G  I+IVKNLRV
Sbjct: 475 INGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRV 534

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+VTK+ISK+  R+I+VRDRNRFHHF  G CSC  YW
Sbjct: 535 CADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 29/272 (10%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P  V    +  + A  G +D +  +F          W A++ G+A  G   +AL+ +  M
Sbjct: 7   PAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQM 66

Query: 81  QIHDVKLNEVSMVSVLSACT-------HLGALDQGRWAHVYIERNRLKMTVTLG------ 127
               V+ N  +  S+L  C        H  A+  G  + +Y+    L +    G      
Sbjct: 67  LTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQ 126

Query: 128 --------------TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
                         TA++  Y+K G ++ A   F GM+ER+   W  +I G   NG   +
Sbjct: 127 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 186

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           +L LF  M +A  +PNEVT +SVL  C  +G +E GR    S     GI+  +     LV
Sbjct: 187 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR-WVHSYIENNGIQFNVHVGTALV 245

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           D+Y + G L++A  V +K+  K    AW +++
Sbjct: 246 DMYSKCGSLEDARLVFDKIDDK-DVVAWNSMI 276


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/461 (48%), Positives = 312/461 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +   +++FD + E  +V  T M++  +K G++D AR +F+ M ERD + WN M
Sbjct: 185 VYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVM 244

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYAQ G   E+L LF  M +     NEV++++VLSAC  LGAL+ GRW H YIE   +
Sbjct: 245 IGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGI 304

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++ V +GTAL+DMYSKCG++  A   F  +++++V  W S+I G AM+G  + +L+LF  
Sbjct: 305 QINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEE 364

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + G +P ++TF+ +L  C   GLVEEGR  F  MR +YGIEP +EHYGC+V+L GRAG
Sbjct: 365 MTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAG 424

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA  ++  M +      WG LL  CR++ N ++GE  ++ LV+ +  N G YVLLSN
Sbjct: 425 HLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSN 484

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA + NW+ V  +R +MK  G++K  GCS IEVD +VHEF AG+  HP+  EI VML E
Sbjct: 485 MYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNE 544

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I+  LK  GY   T+ V++D+ EE+KE +L  HSEK+AIAFGLIS K G  ++IVKNLRV
Sbjct: 545 INSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRV 604

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V KMIS++  R+I++RDRNRFHHF++G CSC  YW
Sbjct: 605 CSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 37/269 (13%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           A  G +D +  +F+   E +  +++A++  + Q      A   +  M    V+ N  +  
Sbjct: 90  AALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFS 149

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM-------------------- 133
           SVL +C+    L+ G+  H    +  L   + + T LVD+                    
Sbjct: 150 SVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPER 205

Query: 134 -----------YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
                      YSK G ++KA   F GMKER+V  W  +IGG A +G   +SL+LF  M 
Sbjct: 206 SLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRML 265

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            A   PNEVT ++VL  C  +G +E GR    S     GI+  +     L+D+Y + G L
Sbjct: 266 VAKAIPNEVTVLAVLSACGQLGALESGR-WIHSYIENKGIQINVHVGTALIDMYSKCGSL 324

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMY 271
           ++A  V +++  K    AW +++    M+
Sbjct: 325 EDARLVFDRIRDKD-VVAWNSMIVGYAMH 352



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 16/178 (8%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R  L     L   L   Y+  G ++ ++  F    E NV++++++I     +   
Sbjct: 67  HASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLF 126

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYG 230
           +++   +S M   GV PN  TF SVL+ C     +E G+  H  +++   G + ++    
Sbjct: 127 DRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVR--T 180

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK-NTEMGEL-ASRKLVE 286
            LVD+Y R G +  A  + +KMP +       +L++   M    ++MGEL  +R L E
Sbjct: 181 GLVDVYARGGDVVCARQLFDKMPER-------SLVSLTTMLTCYSKMGELDKARSLFE 231


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/463 (47%), Positives = 314/463 (67%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + GC+   + +F+ + E D+V  T M+   AK G+ D A  +FD MP +   AWNA+
Sbjct: 318 MYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNAL 377

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y Q GK R AL LFH MQ+  D K +EV+++  L A   LGA+D G W HVYI+++ 
Sbjct: 378 ISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHD 437

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           + +   L T+L+DMY+KCGN+NKAM+ F  ++ ++VY W+++IG LAM G G+ +L+LFS
Sbjct: 438 INLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFS 497

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M +A ++PN VTF ++L  C   GLV EG + F+ M   YGI P ++HY C+VD++GRA
Sbjct: 498 SMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRA 557

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L++A   I KMP+ P A  WGALL AC  + N E+ ELA + L+ELE  NHGA+VLLS
Sbjct: 558 GLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLS 617

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA++ +W++V N+R++M+   VKK P CS I+V+  VHEF  GD +HP   +I   L 
Sbjct: 618 NIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLD 677

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EIS + K  GY  + + ++   EE+   E +L  HSEK+AIAFGLIS     PIRIVKN+
Sbjct: 678 EISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNI 737

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH   K++S++++R+I++RDR RFHHF+ GKCSC  YW
Sbjct: 738 RICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 36/283 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    ++I+     G  DLA ++F  MP +D ++WNAM+  +A  G   +AL LF  M+
Sbjct: 207 DLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEME 266

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           + DVK N ++MVSVLSAC     L+ GRW   YIE N     + L  A++DMY KCG +N
Sbjct: 267 MKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCIN 326

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLA-------------------------------MNGA 170
            A D F  M E+++ +WT+++ G A                                NG 
Sbjct: 327 DAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGK 386

Query: 171 GEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEH 228
              +L LF  M+ +   +P+EVT +  L     +G ++ G   H    + +  +   L  
Sbjct: 387 PRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLA- 445

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
              L+D+Y + G L++A++V + +  K     W A++ A  MY
Sbjct: 446 -TSLLDMYAKCGNLNKAMEVFHAVERK-DVYVWSAMIGALAMY 486



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 115/248 (46%), Gaps = 3/248 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-H 78
           +P    +     A + C  +  A+ +F+++P+ +   WN ++ GYA      ++  +F H
Sbjct: 103 DPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLH 162

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           ++       N+ +   +  A + L  L  G   H  + +  L   + +  +L++ Y   G
Sbjct: 163 MLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSG 222

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
             + A   F  M  ++V +W ++I   A+ G  +K+L LF  M+   V+PN +T VSVL 
Sbjct: 223 APDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLS 282

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C     +E GR    S     G    L     ++D+Y + G +++A D+ NKM  K   
Sbjct: 283 ACAKKIDLEFGR-WICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIV 341

Query: 259 GAWGALLN 266
            +W  +L+
Sbjct: 342 -SWTTMLD 348


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/464 (48%), Positives = 312/464 (67%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + GCLG   +VFD + + DV+  T++I A AK G+++ A ++FD +P +D +AW AM
Sbjct: 184 MYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAM 243

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYAQ  + REAL +F  MQ   VK +EV++V V+SAC  LGA     W     E++  
Sbjct: 244 VTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGF 303

Query: 121 KMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             T  V +G+AL+DMY+KCG++  A   F  M+ERNVY+++S+I G AM+G    ++ELF
Sbjct: 304 GPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELF 363

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M +  ++PN VTF+ VL  C   G+VE+G++ F  M   +G+ P  +HY C+VDL GR
Sbjct: 364 DEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGR 423

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL+EAL+++  MPM PH G WGALL ACR++ N +M ++A+  L ELE    G Y+LL
Sbjct: 424 AGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILL 483

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDRE-VHEFFAGDETHPRYNEIEVM 357
           SNIYA +  WD V  VR++M+AKG+KK PGCS +E  +  +HEFFAGD +HP+  EI+  
Sbjct: 484 SNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQA 543

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++  RLK  GY  N + V YDI +EEK+  L  HSEK+A+AFGL++   G  IRIVKN
Sbjct: 544 LEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKN 603

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR+C DCH V    S++  REI+VRD  RFHHF++G+CSC  +W
Sbjct: 604 LRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           R +F ++   +P  W A++ GYA  G   E++ L++ M+   +     +  ++L AC+  
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 103 GALDQGRWAH------------VYIERNRLKMTVTLG--------------------TAL 130
             ++ GR  H            +Y+    + M V  G                    T+L
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  Y+K GNM  A + F G+  +++  WT+++ G A N    ++LE+F  M+ AGV+ +E
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           VT V V+  C  +G  +      D   +  +G    +     L+D+Y + G +++A  V 
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 250 NKM 252
            +M
Sbjct: 333 ERM 335



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 17/270 (6%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +L   + C    ++   F + Q  + K+ E  +VSVL  CTH+   +Q +  H +I R  
Sbjct: 12  ILPKTSYCQLQTQSFIPFSVRQ--EQKILESRLVSVLHGCTHI---NQVKQVHAHIFRKG 66

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMD-----FFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           L+    +   L+   +K   ++  MD      F  ++  N + WT++I G A+ G   +S
Sbjct: 67  LEQCCFVLAKLLRTLTK---LDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMES 123

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           + L++ M++ G+ P   TF ++L+ C     V  GR+         G    L     L+D
Sbjct: 124 VLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLID 183

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           +Y + G L     V ++M +     +W +L+ A   Y      E AS     L  K+  A
Sbjct: 184 MYVKCGCLGCGHRVFDEM-LDRDVISWTSLIVA---YAKVGNMEAASELFDGLPMKDMVA 239

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           +  +   YA++      + V + M+A GVK
Sbjct: 240 WTAMVTGYAQNARPREALEVFERMQAAGVK 269


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/476 (48%), Positives = 317/476 (66%), Gaps = 15/476 (3%)

Query: 1   MYAELGCLGYCQKVF---------DGIHEP------DVVCQTAMISACAKCGDVDLARKM 45
           MY   G +    ++F         DGI +       DVV    MI    + G++++AR +
Sbjct: 156 MYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNL 215

Query: 46  FDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105
           FDEMP+R  ++WN M+AGYAQ G  +EA+ +F  MQ+ +V  N V++VSVL A + LGAL
Sbjct: 216 FDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGAL 275

Query: 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGL 165
           + G+W H+Y  RN + +   LG+AL+DMY+KCG++ KA+  F G+ +RNV TW+++I GL
Sbjct: 276 ELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGL 335

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
           AM+G  + +L+ F  M++AGV P++VT++ +L  C   GLV EGR  FD M R  G+EP 
Sbjct: 336 AMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPR 395

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285
           +EHYGC+VDL GRAG L+E+ ++I  MP+KP    W ALL AC+M+ N EMG+  +  L+
Sbjct: 396 IEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLM 455

Query: 286 ELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGD 345
           EL   + G+YV LSNIYA   NW+ V  VR +MK   V+K PGCS IE+D  +HEF   D
Sbjct: 456 ELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVED 515

Query: 346 ETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLIS 405
           ++HP+  +I  ML E+SR L L GY  NT  V+ +++EE+KE +L  HSEK+AIAFGLIS
Sbjct: 516 DSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLIS 575

Query: 406 LKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            +   P+RI KNLR+C DCH   K+ISK++ R+IIVRDR RFHHF  G CSC  YW
Sbjct: 576 TQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 132/281 (46%), Gaps = 20/281 (7%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN--AMLAGYA 65
           L Y +K+F  +H P+      +I A ++  D   A  +F EM E   +  N     + + 
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120

Query: 66  QCGKS---REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR---WAHVYIE--- 116
            CG++   RE   +  L     +  +E  + +V+      G ++      +  V+++   
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180

Query: 117 -----RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
                + R+   V L   ++D Y + G +  A + F  M +R+V +W  +I G A +G  
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYG 230
           ++++E+F  M+ A V PN VT VSVL     +G +E G+  H  ++R   G++  L    
Sbjct: 241 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG--S 298

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            L+D+Y + G +++AL V   +P K +   W  ++    M+
Sbjct: 299 ALIDMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMH 338


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/460 (49%), Positives = 316/460 (68%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +++F  + + +V     M+S  AKCG ++ AR++F+EM E++ I+W+AM+
Sbjct: 206 YLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMI 265

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GY + G  +EAL +F++MQ  +++  +  + SVL+AC +LGALDQGRW H Y+  N   
Sbjct: 266 DGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNS 325

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
               LGTALVDMY+KCG ++ A D F  M+++ V+TW ++I GL M+G  E ++ELF  M
Sbjct: 326 FDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKM 385

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           ++   RPN +T + VL  C   G+V+EG   F+SM   YGIEP +EHYGC+VDL GRAG 
Sbjct: 386 QKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGL 445

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L EA +V+  MPM+P A  WGALL ACR + + E+GE   + L+ELE +N G Y LLSNI
Sbjct: 446 LGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNI 505

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA +  WD V NVR++MK +GVK   G S+I+ D  VHEF  GD +HP+   I +ML  +
Sbjct: 506 YARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNM 565

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
            +RLK+ G+  NT+ V++DIEEEEKE  L  HSEK+AIAFGLI+ K G  I +VKNLR+C
Sbjct: 566 IKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMC 625

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K+IS+V++REIIVRDR R+HHFK G CSCK +W
Sbjct: 626 EDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 114/267 (42%), Gaps = 67/267 (25%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV  ++A I      G+V+ AR+M  E    D I +NAM+ GY +CG+   A  LF  M+
Sbjct: 164 DVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSME 223

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +V                      G W                   +V   +KCG + 
Sbjct: 224 DKNV----------------------GSW-----------------NVMVSGMAKCGMIE 244

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F  MKE+N  +W+++I G    G  +++LE+F++M++  +RP +    SVL  C 
Sbjct: 245 EARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACA 304

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHY-------------GCLVDLYGRAGRLDEALDV 248
            +G +++GR              W+  Y               LVD+Y + GRLD A DV
Sbjct: 305 NLGALDQGR--------------WIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDV 350

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTE 275
             KM  K     W A++    M+   E
Sbjct: 351 FEKME-KKEVFTWNAMICGLGMHGRAE 376


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/451 (50%), Positives = 302/451 (66%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            Q++FD + E  +V  TAM++  AK G++D AR +FD M ERD + WN M+ GY Q G  
Sbjct: 112 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 171

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL LF  M     K NEV+++SVLSAC  LGAL+ GRW H YIE N ++  V +GTAL
Sbjct: 172 NEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 231

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           VDMYSKCG++  A   F  + +++V  W S+I G AM+G  +++L+LF  M + G+ P  
Sbjct: 232 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 291

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           +TF+ +L  C   G V EG + F+ M+ EYGIEP +EHYGC+V+L GRAG +++A +++ 
Sbjct: 292 ITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVK 351

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            M ++P    WG LL ACR++    +GE     LV+    N G Y+LLSNIYA   NWD 
Sbjct: 352 NMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDG 411

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V  +R +MK  GVKK PGCS IEV+ +VHEF AG   HP+  EI +ML EI+  LK  GY
Sbjct: 412 VARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGY 471

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
              T+ V++DI E EKE +L  HSEK+AIAFGLI+ + G  I+IVKNLRVC DCH+VTK+
Sbjct: 472 TPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKL 531

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ISK+  R+I+VRDRNRFHHF  G CSC  YW
Sbjct: 532 ISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 17/185 (9%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R+ L     L   L   Y+  G ++ ++  F   +  +V+ WT++I G A+ G  
Sbjct: 50  HAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDV 109

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
             + +LF  M +  +    V+  ++L      G ++  R  FD M    G+      +  
Sbjct: 110 VSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGV-----CWNV 160

Query: 232 LVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           ++D Y + G  +EAL +  +M     KP+     ++L+AC      ++G L S + V   
Sbjct: 161 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC-----GQLGALESGRWVHSY 215

Query: 289 TKNHG 293
            +N+G
Sbjct: 216 IENNG 220


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/462 (47%), Positives = 313/462 (67%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           MYA+ G  G+ Q+VFD +   P      A+I    K G VD+AR +FDEM  RD I +N+
Sbjct: 283 MYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNS 342

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY   G+ REAL LF  M+ HD++++  ++V++L+AC  LGAL QGR  H  IE+  
Sbjct: 343 MMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRL 402

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           ++  + LGTAL+DMY KCG +++A   F  M +R+V+TWT++I GLA NG G+ +LE F 
Sbjct: 403 VEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFY 462

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+  G +PN V++++VL  C    L+ EGR +FD MR  Y I P +EHYGC++DL GR+
Sbjct: 463 QMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRS 522

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G LDEA+D++  MP++P+A  W ++L+ACR++K+ ++ + A+  L++LE    G YV L 
Sbjct: 523 GLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLY 582

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIY +S+ W+    +R +M+ + VKK  G S I V  +VH+F   D++HPR  EI  ML 
Sbjct: 583 NIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLE 642

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           EIS RLK  GY   T+ +  D++EEEKE  L  HSEK+AIAFGLI+L   +P+ I KNLR
Sbjct: 643 EISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLR 702

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH   K+IS+++NREIIVRDR+RFHHF+EG CSC  +W
Sbjct: 703 VCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 34/297 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY  LG     ++ FD IH  D V  T +IS  AK G +   + +  + P RD I+W ++
Sbjct: 151 MYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSL 210

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A Y++  ++REA+  F  M  H +  +EV++++VLSAC  L  L+ GR  H+ +E   +
Sbjct: 211 IAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGM 270

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
             +  L  AL+DMY+KCG+   A   F           W                     
Sbjct: 271 PTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFD 330

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M+ R++ T+ S++ G   +G   ++L LF  M++  +R +  T V++L  C  +G +++
Sbjct: 331 EMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQ 390

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           GR     + +   +E  +     L+D+Y + GR+DEA  V  +M  K     W A++
Sbjct: 391 GRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTAMI 445



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T L+   +K G +            R+V +WTS+I   +      +++  F  M   G+ 
Sbjct: 177 TMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIA 236

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+EVT ++VL  C  +  +E GR     +  E G+         L+D+Y + G    A  
Sbjct: 237 PDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQ 295

Query: 248 VINKMPMKPHAGAWGALLN 266
           V + +   P   +W A+++
Sbjct: 296 VFDALGRGPRPQSWNAIID 314


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/461 (46%), Positives = 309/461 (67%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G       +FD I EPD V   ++I    K G +D+A  +F +M E++ I+W  M+
Sbjct: 160 YAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMI 219

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GY Q   ++EAL LFH MQ  DV+ + VS+ + LSAC  LGAL+QG+W H Y+ + R++
Sbjct: 220 SGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIR 279

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           M   LG  L+DMY+KCG M +A++ F  +K+++V  WT++I G A +G G +++  F  M
Sbjct: 280 MDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEM 339

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           ++ G++PN +TF +VL  C   GLVEEG+  F SM R+Y ++P +EHYGC+VDL GRAG 
Sbjct: 340 QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGL 399

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEA   I +MP+KP+A  WGALL ACR++KN E+GE     L+ ++  + G YV  +NI
Sbjct: 400 LDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANI 459

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           +A  K WD+    R++MK +GV K+PGCS I ++   HEF AGD +HP   +I+     +
Sbjct: 460 HAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIM 519

Query: 362 SRRLKLAGYVANTNPVMYD-IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
            R+L+  GYV     ++ D ++++E+E  + +HSEK+AI +GLI  K G  IRI+KNLRV
Sbjct: 520 RRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRV 579

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH VTK+ISK++ R+I++RDR RFHHF++GKCSC  YW
Sbjct: 580 CKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 137/345 (39%), Gaps = 75/345 (21%)

Query: 1   MYAELGCLGYC--QKVFDGIHE--------PDVVCQTAMISACAKCGDVDL---ARKMFD 47
           +Y  + CL  C  Q+    IH          D    T  +S C      D    A+ +FD
Sbjct: 14  LYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFD 73

Query: 48  EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107
                D   WN M+ G++   +   +L L+  M       N  +  S+L AC++L A ++
Sbjct: 74  GFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEE 133

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYS-------------------------------K 136
               H  I +   +  V    +L++ Y+                               K
Sbjct: 134 TTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 193

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G M+ A+  F  M E+N  +WT++I G       +++L+LF  M+ + V P+ V+  + 
Sbjct: 194 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANA 253

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY------------GC-LVDLYGRAGRLD 243
           L  C  +G +E+G+              W+  Y            GC L+D+Y + G ++
Sbjct: 254 LSACAQLGALEQGK--------------WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEME 299

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           EAL+V   +  K    AW AL++    Y     G  A  K +E++
Sbjct: 300 EALEVFKNIK-KKSVQAWTALISG---YAYHGHGREAISKFMEMQ 340


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/426 (52%), Positives = 300/426 (70%), Gaps = 1/426 (0%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G  D A  +F EMP RD ++WN+MLA YAQCGK  EAL LF  M+   VK  E ++VS+L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
           SAC HLGALD+G   H YI  NR+++   +GTALVDMY+KCG ++ A   F  M+ ++V 
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
            W ++I G+A++G  +++  LF  MK+AGV PN++TFV++L  C   G+V+EG++  D M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
              YGIEP +EHYGC++DL  RAG L+EA+++I  MPM+P+  A GALL  CR++ N E+
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401

Query: 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDR 336
           GE+  ++L+ L+  + G Y+LLSNIYA +K WD    VR +MK  G+ K+PG SVIE+  
Sbjct: 402 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 461

Query: 337 EVHEFFAGDETHPRYNEIEVMLGEISRRLKLA-GYVANTNPVMYDIEEEEKEDTLCKHSE 395
            VH F AGD +HP  N+I   L EI  RLK A G+ A+T  V+ D+EEE+KE  L  HSE
Sbjct: 462 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSE 521

Query: 396 KVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKC 455
           K+AIA+GL+ L     IRIVKNLRVC DCH VTK+ISKV+ REIIVRDRNRFHHF++G+C
Sbjct: 522 KLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGEC 581

Query: 456 SCKGYW 461
           SC  +W
Sbjct: 582 SCLDFW 587



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 37/234 (15%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E + +  TA++   AKCG + LA ++F+ M  +D +AWN ++AG A  G  +EA  LF  
Sbjct: 246 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKE 305

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V+ N+++ V++LSAC+H G +D+G+                    L+D  S    
Sbjct: 306 MKEAGVEPNDITFVAMLSACSHAGMVDEGQ-------------------KLLDCMSSS-- 344

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
                   +G+ E  V  +  VI  LA  G  E+++EL   M    + PN     ++L G
Sbjct: 345 --------YGI-EPKVEHYGCVIDLLARAGLLEEAMELIGTMP---MEPNPCALGALLGG 392

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALDVINKM 252
           C + G  E G       +R   ++P     Y  L ++Y  A + D+A  V N M
Sbjct: 393 CRIHGNFELGEM---VGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLM 443


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/440 (50%), Positives = 296/440 (67%), Gaps = 6/440 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A++   +KCG++  ARK+FD M ++D I WN M+ GY       EAL LF +M   +V 
Sbjct: 298 NALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVT 357

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-----VTLGTALVDMYSKCGNMN 141
            N+V+ ++VL AC  LGALD G+W H YI++N LK T     V+L T+++ MY+KCG + 
Sbjct: 358 PNDVTFLAVLPACASLGALDLGKWVHAYIDKN-LKGTGNVNNVSLWTSIIVMYAKCGCVE 416

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  R++ +W ++I GLAMNG  E++L LF  M   G +P+++TFV VL  C 
Sbjct: 417 VAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACT 476

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G VE G  +F SM ++YGI P L+HYGC++DL  R+G+ DEA  ++  M M+P    W
Sbjct: 477 QAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIW 536

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           G+LLNACR++   E GE  + +L ELE +N GAYVLLSNIYA +  WD V  +R  +  K
Sbjct: 537 GSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDK 596

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK+PGC+ IE+D  VHEF  GD+ HP+   I  ML E+ R L+  G+V +T+ V+YD+
Sbjct: 597 GMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDM 656

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +EE KE  L +HSEK+AIAFGLIS K G  IRIVKNLRVC +CH  TK+ISK+FNREII 
Sbjct: 657 DEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIA 716

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDRNRFHHFK+G CSC   W
Sbjct: 717 RDRNRFHHFKDGFCSCNDRW 736



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 158/278 (56%), Gaps = 4/278 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+++G L + + VFD     D V  TA+I+     G VD AR++FDE+P +D ++WNAM
Sbjct: 171 MYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAM 230

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY Q G+  EAL  F  MQ  DV  N+ +MVSVLSAC HL +L+ G+W   ++     
Sbjct: 231 IAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGF 290

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L  ALVDMYSKCG +  A   F GM++++V  W ++IGG       E++L LF +
Sbjct: 291 GKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEV 350

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPWLEHYGCLVDLYG 237
           M +  V PN+VTF++VL  C  +G ++ G+    + D   +  G    +  +  ++ +Y 
Sbjct: 351 MLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYA 410

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           + G ++ A  V   M  +  A +W A+++   M  + E
Sbjct: 411 KCGCVEVAEQVFRSMGSRSLA-SWNAMISGLAMNGHAE 447



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 114/271 (42%), Gaps = 37/271 (13%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDL--ARKMFDEMPERDP--IAWNAMLAGYAQCGKSRE 72
           G+H   +  Q+ +I  CA     DL  A  +F  +  + P    WN ++  ++       
Sbjct: 52  GLHN-TLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTS 110

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           +LHLF  M    +  N  +  S+  +C    A  + +  H +  +  L +   + T+L+ 
Sbjct: 111 SLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIH 170

Query: 133 MYSKCGNM-------------------------------NKAMDFFWGMKERNVYTWTSV 161
           MYS+ G +                               + A   F  +  ++V +W ++
Sbjct: 171 MYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAM 230

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I G   +G  E++L  F+ M++A V PN+ T VSVL  C  +  +E G+    S  R+ G
Sbjct: 231 IAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKW-IGSWVRDRG 289

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
               L+    LVD+Y + G +  A  + + M
Sbjct: 290 FGKNLQLVNALVDMYSKCGEIGTARKLFDGM 320


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/457 (48%), Positives = 316/457 (69%), Gaps = 3/457 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   + VFDG+ E ++V  + MIS  A+ G+++ AR++F+ MP R+ ++WNAM+
Sbjct: 203 YCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMI 262

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           AGYAQ  K  +A+ LF  MQ H+  L  N+V++VSVLSAC HLGALD G+W H +I RN+
Sbjct: 263 AGYAQNEKYADAIELFRQMQ-HEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNK 321

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++ + LG AL DMY+KCG + +A   F  M ER+V +W+ +I GLAM G   ++   F+
Sbjct: 322 IEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFA 381

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M + G+ PN+++F+ +L  C   GLV++G E+FD M + YGI P +EHYGC+VDL  RA
Sbjct: 382 EMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRA 441

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           GRLD+A  +IN MPM+P+   WGALL  CR+YK+ E GE    +++EL++ + G+ V L+
Sbjct: 442 GRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLA 501

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA     D   + R  M+     K PGCS IE++  V+EFF GD +HP+   I  M+ 
Sbjct: 502 NVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIR 561

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++K+AGY   T+ V+++I+EEEKED L  HSEK+A+AFGLI+  EG  IRIVKNLR
Sbjct: 562 ELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLR 621

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCS 456
           VC DCHD  K+ISK+  REI+VRDR+RFHHFK+GKCS
Sbjct: 622 VCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
            A+NA+L  ++Q       +  F+  L+  +    +E +  SVL AC  L  + +G+  H
Sbjct: 91  FAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVH 150

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
            ++ +   +  + +  +LVD+Y K G    A   F  M  R+V +W ++I G   +G  +
Sbjct: 151 CFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVD 210

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           K+  +F  M    +  N V++ +++ G   VG +EE R+ F++M     +  W      +
Sbjct: 211 KARMVFDGM----MEKNLVSWSTMISGYARVGNLEEARQLFENMPMR-NVVSW----NAM 261

Query: 233 VDLYGRAGRLDEALDVINKMP----MKPHAGAWGALLNACRMYKNTEMGELASR 282
           +  Y +  +  +A+++  +M     + P+     ++L+AC      ++G+   R
Sbjct: 262 IAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHR 315



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 33/175 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+   + VF  +HE DV                               I+W+ +
Sbjct: 335 MYAKCGCVLEAKGVFHEMHERDV-------------------------------ISWSII 363

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           + G A  G + EA + F  M    ++ N++S + +L+ACTH G +D+G  +  +  +   
Sbjct: 364 IMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYG 423

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEK 173
           +   +     +VD+ S+ G +++A      M  + NV  W +++GG  +    E+
Sbjct: 424 ITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAER 478


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/463 (46%), Positives = 316/463 (68%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +++FD + E D V  T M+   A   D + AR++ + MP++D +AWNA+
Sbjct: 278 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNAL 337

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y Q GK  EAL +FH +Q+  ++KLN++++VS LSAC  +GAL+ GRW H YI++N 
Sbjct: 338 ISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNG 397

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +KM   + +AL+ MYSKCG++ KA + F  +++R+V+ W+++IGGLAM+G G +++++F 
Sbjct: 398 IKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFY 457

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++A V+PN VTF +V   C   GLV+E    F  M   YGI P  +HY C+VD+ GR+
Sbjct: 458 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRS 517

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L++A+  I  MP+ P    WGALL AC+++ N  + E+A  +L+ELE +N GA+VLLS
Sbjct: 518 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLS 577

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA+S  WD V  +R+ M+  G+KK PGCS IE+D  +HEF +GD  HP   ++   L 
Sbjct: 578 NIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 637

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           E+  +LK  GY    + V+  IEEEE KE +L  HSEK+AI +GLIS +    IR++KNL
Sbjct: 638 EVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNL 697

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH V K+IS+++NREIIVRDR RFHHF+ G+CSC  +W
Sbjct: 698 RMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 155/313 (49%), Gaps = 36/313 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++I     CGD+D A K+F  + E+D ++WN+M+ G+ Q G   +AL LF  M+
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             DVK + V+MV VLSAC  +  L+ GR    YIE NR+ + +TL  A++DMY+KCG++ 
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAM-------------------------------NGA 170
            A   F  M+E++  TWT+++ G A+                               NG 
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGK 346

Query: 171 GEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
             ++L +F  L  Q  ++ N++T VS L  C  VG +E GR    S  ++ GI+      
Sbjct: 347 PNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR-WIHSYIKKNGIKMNFYVT 405

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
             L+ +Y + G L++A +V N +  K     W A++    M+           K+ E   
Sbjct: 406 SALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANV 464

Query: 290 KNHGAYVLLSNIY 302
           K +G  V  +N++
Sbjct: 465 KPNG--VTFTNVF 475



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 156/337 (46%), Gaps = 19/337 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P    +   I+A +    ++ ARK+FDE+P+ +   WN ++  YA       ++  F  
Sbjct: 62  DPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLD 121

Query: 80  MQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           M   + +   N+ +   ++ A   + +L  G+  H    ++ +   V +  +L+  Y  C
Sbjct: 122 MVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSC 181

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+++ A   F  +KE++V +W S+I G    G+ +K+LELF  M+   V+ + VT V VL
Sbjct: 182 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  +  +E GR    S   E  +   L     ++D+Y + G +++A  + + M  K +
Sbjct: 242 SACAKIRDLEFGRR-VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 300

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES-KNWDRVINVRQ 316
              W  +L+    Y  +E  E A   L  +  K+  A+  L + Y ++ K  + ++   +
Sbjct: 301 V-TWTTMLDG---YAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHE 356

Query: 317 IMKAKGVK--------KLPGCS---VIEVDREVHEFF 342
           +   K +K         L  C+    +E+ R +H + 
Sbjct: 357 LQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYI 393


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/461 (48%), Positives = 309/461 (67%), Gaps = 4/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G +G  Q++F+ +  P  V  T+M++   + GDV+ AR++F+EMPERD ++WNAM+
Sbjct: 87  YAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMI 146

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +G        EAL LF  M       N  ++VSVLSACT  GAL+ G+W HV++E+ RL+
Sbjct: 147 SGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLR 206

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
               LGTALVDMY+KCG +  A++ F G++ RN  TW ++I GLAMNG   K+L++F  M
Sbjct: 207 WDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQM 266

Query: 182 KQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           +  G V P+EVTFV VL  C   G V+ G+EHF ++ ++YG+E  LEHY C+VDL  R+G
Sbjct: 267 ELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSG 326

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA  +I +MPMKP    W ALL  CR++KN +M E     + E+E    G +VLLSN
Sbjct: 327 HLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATCSGDHVLLSN 383

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA    W+ V +VR+ M++KG++K+PGCS +E+D  +HEF +GD++HP Y++I   L E
Sbjct: 384 LYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIE 443

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  R++  GYV  T  V YDIE+EEKE  L  HSEK+AIAFGLI       IRIVKNLR 
Sbjct: 444 IGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRF 503

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SK+++REI+VRDR RFHHF+ G CSC  +W
Sbjct: 504 CTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 47/248 (18%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
             A I      G V  AR++FD MP RD +++N+M+ GYA  G    A  LF        
Sbjct: 49  NNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLF-------- 100

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
                                         ER      VT  T++V  + + G++  A  
Sbjct: 101 ------------------------------ERVLAPTPVTW-TSMVAGFCRAGDVESARR 129

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++ +W ++I G   N    ++L LF  M + G  PN  T VSVL  C   G 
Sbjct: 130 VFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGA 189

Query: 206 VEEGR--EHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
           +E G+    F   +R      W E  G  LVD+Y + G ++ AL+V   +  + +   W 
Sbjct: 190 LETGKWVHVFVEKKRLR----WDEFLGTALVDMYAKCGAVELALEVFTGLRAR-NTCTWN 244

Query: 263 ALLNACRM 270
           A++N   M
Sbjct: 245 AMINGLAM 252


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/464 (48%), Positives = 311/464 (67%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+ + G +   + +FD + + DVV  T +I   AK  +  +AR +FD MP +D  AWN +
Sbjct: 387 MFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVL 446

Query: 61  LAGYAQCGKSREALHLFHLMQI--HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           ++GY Q G+ +EAL +F  +Q+     + ++V+++S LSAC  LGA+D G W H YI++ 
Sbjct: 447 ISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKE 506

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
           R+++   L T+L+DMYSK G++ KA++ F  +  ++V+ W+++I GLAM+G GE ++ELF
Sbjct: 507 RIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELF 566

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M++  V+PN VTF ++L  C   GLV+EG+  FD M R YG+ P  +HY C+VD+ GR
Sbjct: 567 LDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGR 626

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG L+EAL  I  MP+ P A  WGALL AC ++ N E+ E A  +L+E+E  NHGAYVLL
Sbjct: 627 AGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLL 686

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SN+YA++ +W+ V  +RQ M+  G+KK  GCS IE+D  VHEF  GD  HP   +I   L
Sbjct: 687 SNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKL 746

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            EI  RL+  GYVANT  ++  +EEEE KE  L  HSEK+AIAFGLI       IRIVKN
Sbjct: 747 DEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKN 806

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH V KM+SKV+ R+I++RDR RFHHF  G CSC+ YW
Sbjct: 807 LRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 156/316 (49%), Gaps = 41/316 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           DV    ++I   A CG +DLA  +F+  E   +D ++WN+M+ G+ Q G   +AL LF  
Sbjct: 274 DVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFER 333

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V  N V+MVSV+SAC     L  GR    YI+RN + M + +  A +DM+ KCG 
Sbjct: 334 MRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGE 393

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLA-------------------------------MN 168
           +  A   F  M++R+V +WT++I G A                                +
Sbjct: 394 VEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQS 453

Query: 169 GAGEKSLELFSLMK--QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
           G  +++L +F  ++  ++G RP++VT +S L  C  +G ++ G      +++E  I+   
Sbjct: 454 GRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKER-IQLNR 512

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
                L+D+Y ++G +++A++V + +  K     W A++    M+     GE A    ++
Sbjct: 513 NLATSLIDMYSKSGDVEKAIEVFHSIGNK-DVFVWSAMIAGLAMHGR---GEAAIELFLD 568

Query: 287 L-ETKNHGAYVLLSNI 301
           + ET+     V  +N+
Sbjct: 569 MQETQVKPNSVTFTNL 584



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 135/329 (41%), Gaps = 53/329 (16%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           +H+P    +    +A +    +D ARK+FD++P+ +  +WN ++   A      +++ +F
Sbjct: 168 LHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVF 227

Query: 78  HLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
             M +HD     N+ +   ++ A         G+  H    +      V +  +L+  Y+
Sbjct: 228 IRM-LHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYA 286

Query: 136 KCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
            CG+++ A   F  ++   +++ +W S++ G    G  +K+L+LF  M+  GV PN VT 
Sbjct: 287 SCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTM 346

Query: 194 VSVLRGCCVV-----------------------------------GLVEEGREHFDSMRR 218
           VSV+  C                                      G VE  R  FD+M +
Sbjct: 347 VSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEK 406

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
              +      +  ++D Y +      A D+ + MP K    AW  L++    Y+ +   +
Sbjct: 407 RDVVS-----WTTIIDGYAKMSEHGIARDIFDSMPRK-DIPAWNVLISG---YEQSGRPK 457

Query: 279 LASRKLVELETKNHGA----YVLLSNIYA 303
            A     EL+    GA      LLS + A
Sbjct: 458 EALAIFRELQLTKSGARPDQVTLLSTLSA 486


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/440 (50%), Positives = 303/440 (68%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T+++   AKCG+++ AR +FD MPE+D ++W AM+ GYA  G  +EA+ LF  MQ
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQ 306

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +VK +  ++V VLSAC  LGAL+ G W    ++RN       LGTAL+D+Y+KCG+M+
Sbjct: 307 RENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMS 366

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F GMKE++   W ++I GLAMNG  + S  LF  +++ G++P+  TF+ +L GC 
Sbjct: 367 RAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCT 426

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EGR +F+SM R + + P +EHYGC+VDL GRAG LDEA  +I  MPM+ +A  W
Sbjct: 427 HAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVW 486

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACR++++T++ ELA ++L+ELE  N G YVLLSNIY+ +  WD    VR  M  K
Sbjct: 487 GALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEK 546

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            ++K PGCS IEVD  VHEF  GD+ HP   +I   L E+++++K+AGYV  T+ V++DI
Sbjct: 547 RIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDI 606

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  L  HSEK+AIAFGLIS      IR+VKNLRVC DCH   K+IS +  REI V
Sbjct: 607 EEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITV 666

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F+EG CSC  YW
Sbjct: 667 RDNNRFHCFREGSCSCNDYW 686



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 151/259 (58%), Gaps = 6/259 (2%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V  G  + DV  +T+++   AKCG ++ A K+FD++P+++ ++W A+++GY   GK REA
Sbjct: 138 VVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREA 197

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + +F  +   ++  +  ++V VLSACT LG L+ G W H  I    +   V +GT+LVDM
Sbjct: 198 IDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDM 257

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+KCGNM KA   F GM E+++ +W ++I G A+NG  +++++LF  M++  V+P+  T 
Sbjct: 258 YAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTV 317

Query: 194 VSVLRGCCVVGLVEEGREHFDSM--RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           V VL  C  +G +E G E    +  R E+   P L     L+DLY + G +  A +V   
Sbjct: 318 VGVLSACARLGALELG-EWVSGLVDRNEFLYNPVLGT--ALIDLYAKCGSMSRAWEVFKG 374

Query: 252 MPMKPHAGAWGALLNACRM 270
           M  K     W A+++   M
Sbjct: 375 MKEKDRV-VWNAIISGLAM 392



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 29  MISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           MI  C+    D +  R +F ++ + +   WN M+ G        +A+  + LM+      
Sbjct: 51  MILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLP 110

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  +   VL AC  L  L  G   H  + +      V + T+LV +Y+KCG +  A   F
Sbjct: 111 NNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVF 170

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + ++NV +WT++I G    G   +++++F  + +  + P+  T V VL  C  +G + 
Sbjct: 171 DDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLN 230

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            G E       E G+   +     LVD+Y + G +++A  V + MP K    +WGA++  
Sbjct: 231 SG-EWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIV-SWGAMIQG 288


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/453 (49%), Positives = 305/453 (67%), Gaps = 13/453 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK------------ 69
           D   Q ++++  AK G + ++R +FD++ E D   WN MLA YAQ               
Sbjct: 139 DPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDAD 198

Query: 70  -SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            S EALHLF  MQ+  +K NEV++V+++SAC++LGAL QG WAH Y+ RN LK+   +GT
Sbjct: 199 MSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGT 258

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALVDMYSKCG +N A   F  + +R+ + + ++IGG A++G G ++LEL+  MK   + P
Sbjct: 259 ALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVP 318

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           +  T V  +  C   GLVEEG E F+SM+  +G+EP LEHYGCL+DL GRAGRL EA + 
Sbjct: 319 DGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEER 378

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           +  MPMKP+A  W +LL A +++ N EMGE A + L+ELE +  G YVLLSN+YA    W
Sbjct: 379 LQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRW 438

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
           + V  VR +MK  GV KLPG S++E++  +HEF  GD+ HP   EI   +GEI+RRL   
Sbjct: 439 NDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEY 498

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           G+   T+ V++D+EEE+KED L  HSE++AIAF LI+    +PIRI+KNLRVC DCH +T
Sbjct: 499 GHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAIT 558

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+IS  + R+IIVRDRNRFHHFK+G CSC  YW
Sbjct: 559 KLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 307/442 (69%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  V  Q  ++   A CG  + A K+F+ M ER+ + WN+++ GYA  G+  EAL LF  
Sbjct: 172 ESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFRE 231

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  V+ +  +MVS+LSAC  LGAL  GR AHVY+ +  L   +  G AL+D+Y+KCG+
Sbjct: 232 MGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGS 291

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  M+E++V +WTS+I GLA+NG G+++LELF  +++ G+ P+E+TFV VL  
Sbjct: 292 IRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYA 351

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+V+EG ++F  M+ EYGI P +EHYGC+VDL GRAG + +A + I  MPM+P+A 
Sbjct: 352 CSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAV 411

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL AC ++ +  +GE+A  +L++LE K+ G YVLLSN+YA  + W  V  VR+ M 
Sbjct: 412 VWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTML 471

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +GVKK PG S++E+   +HEF  GD +HP+  EI V L EI++ LKL GYV + + V+ 
Sbjct: 472 REGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLA 531

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DIEEEEKE  L  HSEK+AIAF LI+   G+PIR+VKNLRVC DCH   K+ISKVF+REI
Sbjct: 532 DIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREI 591

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRDR+RFHHFK+G CSCK YW
Sbjct: 592 VVRDRSRFHHFKDGHCSCKDYW 613



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 2/230 (0%)

Query: 36  CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSV 95
           C  +  A ++F ++   +   WN M+ GYA+      AL L+  M +  ++ +  +   +
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           L A   L  + +G   H    RN  +  V +   LV MY+ CG+   A   F  M ERN+
Sbjct: 147 LKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNL 206

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            TW SVI G A+NG   ++L LF  M   GV P+  T VS+L  C  +G +  GR     
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           M +  G++  L     L+DLY + G + +A  V ++M  K    +W +L+
Sbjct: 267 MVK-VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKS-VVSWTSLI 314



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 4/160 (2%)

Query: 109 RWAHVYIERNRLKMT-VTLGTALV-DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           R  H +  R+ + +T   +G  L+  + S C  M+ A   F  ++  N++TW ++I G A
Sbjct: 57  RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYA 116

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            +     +LEL+  M  + + P+  T+  +L+    +  V EG E   S+    G E  +
Sbjct: 117 ESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREG-EKVHSIAIRNGFESLV 175

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
                LV +Y   G  + A  +   M  + +   W +++N
Sbjct: 176 FVQNTLVHMYAACGHAESAHKLFELMAER-NLVTWNSVIN 214


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/463 (48%), Positives = 315/463 (68%), Gaps = 3/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y ++GC    QK+FD +   DVV    +IS     G VD AR +FD M E++ ++W+ M
Sbjct: 171 LYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTM 230

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           ++GYA+  K  +A+ LF  MQ H+  L  N+V++VSVLSAC HLGALD G+W H +I RN
Sbjct: 231 ISGYARNEKYADAIELFRQMQ-HEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRN 289

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
           ++++ + LG AL DMY+KCG + +A   F  M ER+V +W+ +I GLAM G   ++   F
Sbjct: 290 KIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFF 349

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
           + M + G+ PN+++F+ +L  C   GLV++G E+FD M + YGI P +EHYGC+VDL  R
Sbjct: 350 AEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSR 409

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRLD+A  +IN MPM+P+   WGALL  CR+YK+ E GE    +++EL++ + G+ V L
Sbjct: 410 AGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYL 469

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           +N+YA     D   + R  M+     K PGCS IE++  V+EFF GD +HP+   I  M+
Sbjct: 470 ANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMI 529

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+  ++K+AGY   T+ V+++I+EEEKED L  HSEK+A+AFGLI+  EG  IRIVKNL
Sbjct: 530 RELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNL 589

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCHD  K+ISK+  REI+VRDR+RFHHFK+GKCSC  YW
Sbjct: 590 RVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 38/287 (13%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPI-AWNAMLAGYAQCGKSREALHLFH 78
           +P+++     I   +  G++  +  +F+       I A+NA+L  ++Q       +  F+
Sbjct: 56  DPNIIA-VKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFN 114

Query: 79  --LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
             L+  +    +E +  SVL AC  L  + +G+  H ++ +   +  + +  +LVD+Y K
Sbjct: 115 NQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFK 174

Query: 137 -------------------------------CGNMNKAMDFFWGMKERNVYTWTSVIGGL 165
                                           G ++KA   F GM E+N+ +W+++I G 
Sbjct: 175 VGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGY 234

Query: 166 AMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
           A N     ++ELF  M+ + G+ PN+VT VSVL  C  +G ++ G+     +RR   IE 
Sbjct: 235 ARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRN-KIEV 293

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            L     L D+Y + G + EA  V ++M  +    +W  ++    MY
Sbjct: 294 GLFLGNALADMYAKCGCVLEAKGVFHEMHERD-VISWSIIIMGLAMY 339


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/461 (47%), Positives = 320/461 (69%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G +   + +FD + + D V   +MI    KCG++++A ++F+ MPER+ I+W +M
Sbjct: 162 VYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSM 221

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G    GK +EAL+LFH MQ   +KL+ V++VS L AC  LG LDQG+W H YI+++ +
Sbjct: 222 ISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEI 281

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   LG  L+DMY+KCG++ +A++ F  M+E+ V  WT++I G A++G G ++LE F  
Sbjct: 282 EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMK 341

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ AGV PN++TF  +L  C   GLV E +  F+SM R +G +P +EHYGC+VDL GRAG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA ++I  MP+KP+A  WGALLNAC ++ N E+G+   + L++++  + G Y+ L++
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLAS 461

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           I+A +  W++   VR+ MK +GV KLPGCSVI V+   HEF AGDE+HP+  EI+ ML +
Sbjct: 462 IHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQ 521

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  RL+  GY      ++ D+E++EKE  +  HSEK+A+ FGLIS K G+ IRIVKNLRV
Sbjct: 522 IVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRV 581

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V K+ISKV+ REI++RDR RFH FK+G C+C  YW
Sbjct: 582 CEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 39/281 (13%)

Query: 22  DVVCQTAMISACAK--CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D +  + +++ CA    G +  AR +FD +   +   WN M+ GY+   +  EAL L+H 
Sbjct: 49  DEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHH 108

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYIERNRLKMTVTLG- 127
           M  H V  N  +   +L AC+ + A ++ +  H           +Y   + L +    G 
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 128 -------------------TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
                               +++D Y+KCG +  A + F  M ERN+ +WTS+I G    
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLE 227
           G  +++L LF  M+ AG++ + V  VS L+ C  +G++++G+  H    + E  I+P L 
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL- 287

Query: 228 HYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             GC L+D+Y + G L+EA++V  KM  K     W A+++ 
Sbjct: 288 --GCVLIDMYAKCGDLEEAIEVFRKMEEKG-VSVWTAMISG 325


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/461 (47%), Positives = 320/461 (69%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G +   + +FD + + D V   +MI    KCG++++A ++F+ MPER+ I+W +M
Sbjct: 162 VYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSM 221

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G    GK +EAL+LFH MQ   +KL+ V++VS L AC  LG LDQG+W H YI+++ +
Sbjct: 222 ISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEI 281

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   LG  L+DMY+KCG++ +A++ F  M+E+ V  WT++I G A++G G ++LE F  
Sbjct: 282 EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMK 341

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ AGV PN++TF  +L  C   GLV E +  F+SM R +G +P +EHYGC+VDL GRAG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA ++I  MP+KP+A  WGALLNAC ++ N E+G+   + L++++  + G Y+ L++
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLAS 461

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           I+A +  W++   VR+ MK +GV KLPGCSVI V+   HEF AGDE+HP+  EI+ ML +
Sbjct: 462 IHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQ 521

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  RL+  GY      ++ D+E++EKE  +  HSEK+A+ FGLIS K G+ IRIVKNLRV
Sbjct: 522 IVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRV 581

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V K+ISKV+ REI++RDR RFH FK+G C+C  YW
Sbjct: 582 CEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 39/281 (13%)

Query: 22  DVVCQTAMISACAK--CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D +  + +++ CA    G +  AR +FD +   +   WN M+ GY+   +  EAL L+H 
Sbjct: 49  DEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHH 108

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYIERNRLKMTVTLG- 127
           M  H V  N  +   +L AC+ + AL++ +  H           +Y   + L +    G 
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 128 -------------------TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
                               +++D Y+KCG +  A + F  M ERN+ +WTS+I G    
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLE 227
           G  +++L LF  M+ AG++ + V  VS L+ C  +G++++G+  H    + E  I+P L 
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL- 287

Query: 228 HYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             GC L+D+Y + G L+EA++V  KM  K     W A+++ 
Sbjct: 288 --GCVLIDMYAKCGDLEEAIEVFRKMEEKG-VSVWTAMISG 325


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/465 (48%), Positives = 310/465 (66%), Gaps = 5/465 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +   ++VFD   + D+     MI      G++  A++MFDEM ERD ++W  +
Sbjct: 161 MYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTI 220

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY Q G  +EAL LFH M       NE ++ S L+AC +L ALDQGRW HVYI+++ +
Sbjct: 221 IAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEI 280

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF---WGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           KM   L  +L+DMY+KCG ++ A   F   +G+K + V+ W ++IGG AM+G  +++++L
Sbjct: 281 KMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDL 339

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  MK   V PN+VTFV++L  C    LVEEGR +F SM   YGIEP +EHYGC+VDL G
Sbjct: 340 FEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLG 399

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G L EA + +  MPM P A  WGALL ACR++K+ E G+   + + EL++ + G +VL
Sbjct: 400 RSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVL 459

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+N+Y+ S  WD    VRQ ++  G KK PGCS IE++   H+F  GD +HP+  ++ + 
Sbjct: 460 LANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLF 519

Query: 358 LGEISRRLKLAGYVANTNPVMYDI-EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
           L E++ +LK AGYV     V+ DI +EE+KE  L KHSEK+AIAFGLI+   G  IRIVK
Sbjct: 520 LDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVK 579

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLRVC DCH+ TK ISKV+ REIIVRDR R+HHFK+G CSCK YW
Sbjct: 580 NLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 140/318 (44%), Gaps = 25/318 (7%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDL-ARKMFDEMPERDPIAWN--A 59
           +  G L Y  ++FD I +PDV     MI A A        + ++F  M        N   
Sbjct: 60  SSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYT 119

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL----GALDQGR----WA 111
            +  +  CG     L     +++H +K+   S + V +A   +    G +D+ R    W+
Sbjct: 120 FVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS 178

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
              ++++     + +G      Y   G + +A + F  M ER+V +WT++I G    G  
Sbjct: 179 ---LDQDLYSWNIMIGG-----YVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCF 230

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYG 230
           +++L+LF  M Q G  PNE T  S L  C  +  +++GR  H    + E  +   L    
Sbjct: 231 KEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERL--LA 288

Query: 231 CLVDLYGRAGRLDEALDVI-NKMPMKPHAGAWGALLNACRMY-KNTEMGELASRKLVELE 288
            L+D+Y + G +D A  V  ++  +K     W A++    M+ K+ E  +L  +  VE  
Sbjct: 289 SLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKV 348

Query: 289 TKNHGAYVLLSNIYAESK 306
           + N   +V L N  +  K
Sbjct: 349 SPNKVTFVALLNACSHGK 366


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/464 (46%), Positives = 312/464 (67%), Gaps = 5/464 (1%)

Query: 1   MYAELGCLGYCQKVFDGI---HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           MYA+ G +G   +VFD +     P      AMI    K G VD+AR +FD+M +RD + +
Sbjct: 281 MYAKCGDIGRAWEVFDALGRGRRPQ--SWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTF 338

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+++ GY   G+ REAL LF  M+ HD++ +  +MVS+L+AC  LGAL QGR  H  IE+
Sbjct: 339 NSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQ 398

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             +++ + LGTAL+DMY KCG + +A   F  M  R+V+TW+++I GLA NG G+ +LE 
Sbjct: 399 RLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEY 458

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  MK  G +PN VT++++L  C    L++EGR +F+ MR  + I P +EHYGC++DL G
Sbjct: 459 FFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLG 518

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G LDEA+D++  MPM+P+A  W ++L+ACR++K+  +   A+  L++LE      YV 
Sbjct: 519 RSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQ 578

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L NIY +S+ W+    +R++M+ +GVKK  G S I V  +VH+F   D THP+  EI  M
Sbjct: 579 LYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAM 638

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + EI+RRLK  GY   T+ +  D++EEEKE  L  HSEK+AIAFGLISL   +P+ I+KN
Sbjct: 639 MEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKN 698

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   K+IS+++NREIIVRDR+RFHHF++G CSC  +W
Sbjct: 699 LRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 36/298 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY ELG  G  ++ FD I   D V  T +IS  AK G +D A  +    P R+ I+W  +
Sbjct: 149 MYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY++ G++ EA+  F+ M    ++ +EV+++ +LSAC  L  L  GR  H  +    +
Sbjct: 209 ISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGM 268

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
            M+  L  AL+DMY+KCG++ +A + F           W                     
Sbjct: 269 LMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFD 328

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M++R++ T+ S+I G    G   ++L LF  M++  +R +  T VS+L  C  +G + +
Sbjct: 329 QMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQ 388

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           GR  H    +R   ++ +L     L+D+Y + GR++EA  V   M ++     W A++
Sbjct: 389 GRALHACIEQRLVEVDIYLG--TALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMI 443



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T ++   +K G ++ A         RNV +WT +I G +  G   ++++ F+ M   G+ 
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+EVT + +L  C  +  +  GR     +  E G+    +    L+D+Y + G +  A +
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRS-LHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWE 293

Query: 248 VINKMPMKPHAGAWGALLN 266
           V + +       +W A+++
Sbjct: 294 VFDALGRGRRPQSWNAMID 312


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/462 (45%), Positives = 307/462 (66%), Gaps = 2/462 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERD-PIAWNAM 60
           YA  G   +   +FD I EPD V   ++I    K G++D+A  +F +MPE++  I+W  M
Sbjct: 155 YAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTM 214

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY Q G ++EAL LFH MQ  +V  + VS+ S LSAC+ LGAL+QG+W H Y  + R 
Sbjct: 215 ISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRT 274

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   L   L+DMY+KCG M +A+  F  MK ++V  WT++I G A +G G +++  F  
Sbjct: 275 RIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLE 334

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  GV+PN +TF +VL  C   GLVEEG+  F+++ R+Y ++P +EHYGC+VDL GRAG
Sbjct: 335 MQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAG 394

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA   I KMP+KP+A  WG+LL AC+++KN E+GE     L+E+++ + G YV ++N
Sbjct: 395 LLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMAN 454

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           I+A  K WD+    R++M+ +GV K+PGCS I ++   HEF AGD +H    EI      
Sbjct: 455 IHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRF 514

Query: 361 ISRRLKLAGYVANTNPVMYD-IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           + R+L+  GYV     ++ D +++EEKE  + +HSEK+AI +GL+  K G  IRI+KNLR
Sbjct: 515 VRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLR 574

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V  +ISK++ R+I++RDR RFHHFK+GKCSC  YW
Sbjct: 575 VCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 118/279 (42%), Gaps = 43/279 (15%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
            F+     D   WN M+ G +   +   +L L+H M       N  +   +L AC++L A
Sbjct: 66  FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYS----------------------------- 135
             +    H +I +      +    +L++ Y+                             
Sbjct: 126 FQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKG 185

Query: 136 --KCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
             K G M+ A+  F  M E+ N  +WT++I G    G  +++L+LF  M+ + V P+ V+
Sbjct: 186 YVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVS 245

Query: 193 FVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVI 249
             S L  C  +G +E+G+  H  + +    I+  L    C  L+D+Y + G ++EAL V 
Sbjct: 246 LASALSACSQLGALEQGKWIHSYANKTRTRIDSVL----CCVLIDMYAKCGEMEEALGVF 301

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
             M  K     W AL++    Y    +G  A  K +E++
Sbjct: 302 KNMKTKS-VQVWTALISG---YAYHGLGREAISKFLEMQ 336


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/436 (49%), Positives = 295/436 (67%), Gaps = 2/436 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            +I    KCGD++ A  +F+++ +++ ++WN M+ GY      +EAL LF  M   ++  
Sbjct: 301 GLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDP 360

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERN--RLKMTVTLGTALVDMYSKCGNMNKAMD 145
           N+V+ +S+L AC +LGALD G+W H Y+++N   +K TV L T+L+DMY+KCG++  A  
Sbjct: 361 NDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKR 420

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  +++ TW ++I G AM+G  + +L LFS M   G  P+++TFV VL  C   GL
Sbjct: 421 IFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGL 480

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +  GR +F SM ++Y + P L HYGC++DL+GRAG  DEA  ++  M MKP    W +LL
Sbjct: 481 LSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLL 540

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR+++  E+ E  ++ L ELE +N  AYVLLSNIYA +  W+ V  +R  +    +KK
Sbjct: 541 GACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKK 600

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PGCS IEVD  VHEF  GD+ HP+ NEI  ML EI  RL+ AG+V +T+ V+YD++EE 
Sbjct: 601 VPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEW 660

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSEK+AIAFGLIS K G  IRI+KNLRVC +CH  TK+ISK+FNREII RDRN
Sbjct: 661 KEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRN 720

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSCK YW
Sbjct: 721 RFHHFKDGSCSCKDYW 736



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 158/283 (55%), Gaps = 15/283 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   + VFD     D V  TA+I+  A  G +D AR++FDE+P RD ++WNAM
Sbjct: 172 MYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAM 231

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVYIERNR 119
           ++GYAQ G+  EA+  F  M+   V  N  +M+SVLSAC   G +L  G W   +IE   
Sbjct: 232 ISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRG 291

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L   + L   L+DMY KCG++ +A + F  ++++NV +W  +IGG       +++L LF 
Sbjct: 292 LGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFR 351

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-------EHFDSMRREYGIEPWLEHYGCL 232
            M Q+ + PN+VTF+S+L  C  +G ++ G+       ++  SM+    +      +  L
Sbjct: 352 RMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVAL------WTSL 405

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           +D+Y + G L  A  + + M  K  A  W A+++   M+ +T+
Sbjct: 406 IDMYAKCGDLAVAKRIFDCMNTKSLA-TWNAMISGFAMHGHTD 447



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 127/298 (42%), Gaps = 53/298 (17%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKC--GDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           + Q +  G+H       + +I  CA    GD+  A  +F  +   + + WN M+ G +  
Sbjct: 48  HSQIIKTGLHNTHFAL-SKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSS 106

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
                AL  +  M     + NE +  S+  +CT +    +G+  H ++ +  L+    + 
Sbjct: 107 ESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVH 166

Query: 128 TALVDMYSKCGN-------------------------------MNKAMDFFWGMKERNVY 156
           T+L++MY++ G                                +++A + F  +  R+V 
Sbjct: 167 TSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVV 226

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W ++I G A +G  E+++  F  M++A V PN  T +SVL  C   G          S+
Sbjct: 227 SWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSG---------SSL 277

Query: 217 RREYGIEPWLEHYGC---------LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +    +  W+E  G          L+D+Y + G L+EA ++  K+  K +  +W  ++
Sbjct: 278 QLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDK-NVVSWNVMI 334



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   T++I   AKCGD+ +A+++FD M  +    WNAM++G+A  G +  AL LF  M  
Sbjct: 399 VALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTS 458

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                ++++ V VL+AC H G L  G R+    I+  ++   +     ++D++ + G  +
Sbjct: 459 EGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFD 518

Query: 142 KAMDFFWGMKER-NVYTWTSVIGG 164
           +A      M+ + +   W S++G 
Sbjct: 519 EAETLVKNMEMKPDGAIWCSLLGA 542


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/463 (47%), Positives = 314/463 (67%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G +   QKVFD + E  +V  TAMI+  AK G+V+ AR +FD M ERD ++WN M
Sbjct: 170 VYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVM 229

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           + GYAQ G   +AL LF  L+     K +E+++V+ LSAC+ +GAL+ GRW HV+++ +R
Sbjct: 230 IDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSR 289

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++ V + T L+DMYSKCG++ +A+  F     +++  W ++I G AM+G  + +L LF+
Sbjct: 290 IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFN 349

Query: 180 LMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M+   G++P ++TF+  L+ C   GLV EG   F+SM +EYGI+P +EHYGCLV L GR
Sbjct: 350 EMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGR 409

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG+L  A + I  M M   +  W ++L +C+++ +  +G+  +  L+ L  KN G YVLL
Sbjct: 410 AGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA   +++ V  VR +MK KG+ K PG S IE++ +VHEF AGD  H +  EI  ML
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            +IS R+K  GYV NTN V+ D+EE EKE +L  HSE++AIA+GLIS K G P++I KNL
Sbjct: 530 RKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH VTK+ISK+  R+I++RDRNRFHHF +G CSC  +W
Sbjct: 590 RVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 38/272 (13%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A A  G +  +  +F +  + D   + A +   +  G   +A  L+  +   ++  NE +
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC-------------- 137
             S+L +C+       G+  H ++ +  L +   + T LVD+Y+K               
Sbjct: 133 FSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 138 -----------------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS- 179
                            GN+  A   F  M ER++ +W  +I G A +G    +L LF  
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           L+ +   +P+E+T V+ L  C  +G +E GR       +   I   ++    L+D+Y + 
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGR-WIHVFVKSSRIRLNVKVCTGLIDMYSKC 307

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G L+EA+ V N  P K    AW A++    M+
Sbjct: 308 GSLEEAVLVFNDTPRKDIV-AWNAMIAGYAMH 338



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 10/154 (6%)

Query: 104 ALDQGRWAHVYIERNRLKM---TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           ++D+    H  I R+ L +      L   L   Y+  G +  ++  F    + +++ +T+
Sbjct: 41  SVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 100

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRRE 219
            I   ++NG  +++  L+  +  + + PNE TF S+L+ C      + G+  H   ++  
Sbjct: 101 AINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFG 156

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            GI+P++     LVD+Y + G +  A  V ++MP
Sbjct: 157 LGIDPYVA--TGLVDVYAKGGDVVSAQKVFDRMP 188


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/465 (48%), Positives = 310/465 (66%), Gaps = 5/465 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +   ++VFD   + D+     MI      G++  A++MFDEM ERD ++W  +
Sbjct: 76  MYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTI 135

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY Q G  +EAL LFH M       NE ++ S L+AC +L ALDQGRW HVYI+++ +
Sbjct: 136 IAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEI 195

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF---WGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           KM   L  +L+DMY+KCG ++ A   F   +G+K + V+ W ++IGG AM+G  +++++L
Sbjct: 196 KMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDL 254

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  MK   V PN+VTFV++L  C    LVEEGR +F SM   YGIEP +EHYGC+VDL G
Sbjct: 255 FEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLG 314

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G L EA + +  MPM P A  WGALL ACR++K+ E G+   + + EL++ + G +VL
Sbjct: 315 RSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVL 374

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+N+Y+ S  WD    VRQ ++  G KK PGCS IE++   H+F  GD +HP+  ++ + 
Sbjct: 375 LANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLF 434

Query: 358 LGEISRRLKLAGYVANTNPVMYDI-EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
           L E++ +LK AGYV     V+ DI +EE+KE  L KHSEK+AIAFGLI+   G  IRIVK
Sbjct: 435 LDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVK 494

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLRVC DCH+ TK ISKV+ REIIVRDR R+HHFK+G CSCK YW
Sbjct: 495 NLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 37/272 (13%)

Query: 70  SREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           S  ++ +F  ++++     N  + V V  AC +   + +G    V+  +  L+  + +  
Sbjct: 12  SHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTN 71

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG------------------- 169
           A++ MY+  G +++A   F    ++++Y+W  +IGG   +G                   
Sbjct: 72  AMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVS 131

Query: 170 -----AG-------EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSM 216
                AG       +++L+LF  M Q G  PNE T  S L  C  +  +++GR  H    
Sbjct: 132 WTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYID 191

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGAWGALLNACRMY-KNT 274
           + E  +   L     L+D+Y + G +D A  V  ++  +K     W A++    M+ K+ 
Sbjct: 192 KSEIKMNERL--LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSK 249

Query: 275 EMGELASRKLVELETKNHGAYVLLSNIYAESK 306
           E  +L  +  VE  + N   +V L N  +  K
Sbjct: 250 EAIDLFEQMKVEKVSPNKVTFVALLNACSHGK 281


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/461 (47%), Positives = 311/461 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G      KVF+ +    VV   ++I+   + GD++LA ++FDEM ERD ++WN M
Sbjct: 376 MYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTM 435

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +    Q     EA+ LF  MQ   +  + V+MV + SAC +LGALD  +W   YIE+N +
Sbjct: 436 IGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDI 495

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + LGTALVDM+S+CG+ + AM  F  M++R+V  WT+ IG +AM G  E ++ELF+ 
Sbjct: 496 HVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNE 555

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +  V+P++V FV++L  C   G V++GR+ F SM + +GI P + HYGC+VDL GRAG
Sbjct: 556 MLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAG 615

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA+D+I  MP++P+   WG+LL ACR +KN E+   A+ KL +L  +  G +VLLSN
Sbjct: 616 LLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSN 675

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  W  V  VR  MK KGV+K+PG S IEV   +HEF +GDE+H     I +ML E
Sbjct: 676 IYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEE 735

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I+ RL  AGYV +T  V+ D++E+EKE  L +HSEK+A+A+GLI+  +G+PIR+VKNLR+
Sbjct: 736 INCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRM 795

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SK++NREI VRD NR+H FKEG CSC+ YW
Sbjct: 796 CSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 159/315 (50%), Gaps = 8/315 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    ++I   A+CG VDL RK+FD M ER+ ++W +++ GY+    S+EA+ LF  
Sbjct: 162 EGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQ 221

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+ N V+MV V+SAC  L  L+ G+    YI    ++++  +  ALVDMY KCG+
Sbjct: 222 MGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGD 281

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F     +N+  + +++     +      L +   M Q G RP++VT +S +  
Sbjct: 282 ICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAA 341

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +G +  G+     + R  G+E W      ++D+Y + G+ + A  V   MP K    
Sbjct: 342 CAQLGDLSVGKSSHAYVLRN-GLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVV- 399

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +L+    + ++ +M ELA R   E+  ++  ++  +     +   ++  I + + M+
Sbjct: 400 TWNSLIAG--LVRDGDM-ELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQ 456

Query: 320 AKGVKKLPGCSVIEV 334
            +G+   PG  V  V
Sbjct: 457 NQGI---PGDRVTMV 468



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 29  MISACAKCG---DVDLARKMF--DEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +I++  + G    +D AR  F  D+        +N ++ GYA  G   +A+ L+  M + 
Sbjct: 65  LIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVM 124

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            +  ++ +   +LSAC+ + AL +G   H  + +  L+  + +  +L+  Y++CG ++  
Sbjct: 125 GIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLG 184

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F GM ERNV +WTS+I G +     ++++ LF  M +AGV PN VT V V+  C  +
Sbjct: 185 RKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKL 244

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
             +E G++   S   E G+E        LVD+Y + G +  A  + ++
Sbjct: 245 KDLELGKK-VCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDE 291


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/468 (47%), Positives = 315/468 (67%), Gaps = 7/468 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G L   Q+VFD     D+    ++++A AK G +D ARK+FDEMPER+ I+W+ +
Sbjct: 106 MYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-----VKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           + GY  CGK +EAL LF  MQ+       V+ NE +M +VLSAC  LGAL+QG+W H YI
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKS 174
           ++  +++ + LGTAL+DMY+KCG++ +A   F  +  +++V  ++++I  LAM G  ++ 
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285

Query: 175 LELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
            +LFS M  +  + PN VTFV +L  C   GL+ EG+ +F  M  E+GI P ++HYGC+V
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           DLYGR+G + EA   I  MPM+P    WG+LL+  RM  + +  E A ++L+EL+  N G
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 405

Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
           AYVLLSN+YA++  W  V  +R  M+ KG+ K+PGCS +EV+  VHEF  GDE+      
Sbjct: 406 AYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESER 465

Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
           I  ML EI +RL+ AGYV +T  V+ D+ E++KE  L  HSEK+AIAF L+  + G P+R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525

Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           I+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF++G CSC+ +W
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/452 (50%), Positives = 304/452 (67%), Gaps = 10/452 (2%)

Query: 20  EP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ--------CGK 69
           EP  D   Q A+++  AKCG V   R +F+++ + D  +WN++L+ Y             
Sbjct: 139 EPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSL 198

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           S E L LF  MQ   +K NEV++V+++SAC  LGAL QG WAHVY+ ++ LK+   +GTA
Sbjct: 199 SLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTA 258

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMYSKCG ++ A   F  +  R+   + ++IGG A++G G ++L+LF  M   G+ P+
Sbjct: 259 LIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPD 318

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           +VT V  +  C  VGLVEEG + F+SM+  YG+EP LEHYGCLVDL GRAGRL EA + +
Sbjct: 319 DVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERV 378

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
             MPMKP+A  W +LL A R++ N E+GE+  + L++LE +  G YVLLSN+YA    WD
Sbjct: 379 LNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWD 438

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  VR++MK  G+ K+PG S++EV   +HEF  GD+THPR  EI + L E+SRRL   G
Sbjct: 439 DVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYG 498

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           +   T  V++DIEEEEKED L  HSE++AIAF LI+     PIRI+KNLRVC DCH  +K
Sbjct: 499 HKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSK 558

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +ISK++ REIIVRDRNRFHHFKEG CSC  YW
Sbjct: 559 LISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/437 (49%), Positives = 297/437 (67%), Gaps = 2/437 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+I    KCG+ D+AR++FD + E+D I+WN M+ GY+      EAL LF +M   +VK
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMD 145
            N+V+ + +L AC  LGALD G+W H YI++N R     +L T+L+DMY+KCG +  A  
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAER 421

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLRGCCVVG 204
            F  M  RN+ +W +++ G AM+G  E++L LFS M   G+ RP+++TFV VL  C   G
Sbjct: 422 VFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAG 481

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           LV+ G ++F SM ++YGI P L+HYGC++DL  RA + +EA  ++  M M+P    WG+L
Sbjct: 482 LVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSL 541

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L+AC+ +   E GE  + +L +LE +N GA+VLLSNIYA +  WD V  +R  +  KG+K
Sbjct: 542 LSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMK 601

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGC+ IE+D +VHEF  GD+ HP  N I  ML E+ + L+  G+V NT+ V+YD++EE
Sbjct: 602 KVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEE 661

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L +HSEK+AI+FGLI  K G  IRIVKNLRVC +CH  TK+ISK+FNREII RDR
Sbjct: 662 WKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 721

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFHHFK+G CSC   W
Sbjct: 722 NRFHHFKDGFCSCNDCW 738



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 161/279 (57%), Gaps = 9/279 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA +G + + + VFD     D V  TA+I+     G +D AR++FDE+P +D ++WNAM
Sbjct: 175 MYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAM 234

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY Q G+  EA+  F+ MQ  +V  N+ +MV VLSAC H  + + G+W   ++  N  
Sbjct: 235 ISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGF 294

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L  AL+DMY KCG  + A + F G++E++V +W ++IGG +     E++L LF +
Sbjct: 295 GSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEV 354

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFD-SMRREYGIEPWLEHYGCLVDLY 236
           M ++ V+PN+VTF+ +L  C  +G ++ G+    + D ++R       W      L+D+Y
Sbjct: 355 MLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTS----LIDMY 410

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            + G ++ A  V   M  + +  +W A+L+   M+ + E
Sbjct: 411 AKCGCIEAAERVFRSMHSR-NLASWNAMLSGFAMHGHAE 448



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 37/269 (13%)

Query: 23  VVCQTAMISACA--KCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLF 77
           V  Q+ +I  CA    GD+  A  +F+E  +    +   WN+++ GY+       +LHLF
Sbjct: 60  VFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLF 119

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M  + V+ N  +   +  +CT   A  +G+  H +  +  L     + T+++ MY+  
Sbjct: 120 SRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASV 179

Query: 138 GNM-------------------------------NKAMDFFWGMKERNVYTWTSVIGGLA 166
           G M                               + A   F  +  ++V +W ++I G  
Sbjct: 180 GEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYV 239

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            +G  E+++  F  M++A V PN+ T V VL  C      E G+    S  R+ G    L
Sbjct: 240 QSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGK-WIGSWVRDNGFGSNL 298

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +    L+D+Y + G  D A ++ + +  K
Sbjct: 299 QLTNALIDMYCKCGETDIARELFDGIEEK 327



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 71/255 (27%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+   ++VF  +H  ++    AM+S  A  G  + A  +F EM  +        
Sbjct: 409 MYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKG------- 461

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                          LF        + ++++ V VLSACT  G +D G   H Y      
Sbjct: 462 ---------------LF--------RPDDITFVGVLSACTQAGLVDLG---HQYF----- 490

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                                ++M   +G+  + +  +  +I  LA     EK  E   L
Sbjct: 491 ---------------------RSMIQDYGISPK-LQHYGCMIDLLA---RAEKFEEAEIL 525

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV---DLYG 237
           MK   + P+   + S+L  C   G VE G        R + +EP  E+ G  V   ++Y 
Sbjct: 526 MKNMEMEPDGAIWGSLLSACKAHGRVEFGEY---VAERLFQLEP--ENAGAFVLLSNIYA 580

Query: 238 RAGRLDEALDVINKM 252
            AGR D+   +  ++
Sbjct: 581 GAGRWDDVARIRTRL 595


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/462 (47%), Positives = 317/462 (68%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +    ++F  +   DVV  T+M++   KCG V+ AR+MFDEMP R+   W+ M
Sbjct: 163 MYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIM 222

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYA+     +A+ LF LM+   V  NE  MVSV+S+C HLGAL+ G  AH Y+ ++ +
Sbjct: 223 INGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHM 282

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + LGTALVDMY +CG + KA+  F  + +++  +W+S+I GLA++G   K++  FS 
Sbjct: 283 TVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQ 342

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + G  P ++T  +VL  C   GLV++G E +++M+R+YGIEP LEHYGC+VD+ GRAG
Sbjct: 343 MVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAG 402

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L EA + I KMP+KP+A   GALL AC++YKNTE+ E     L+E++ ++ G YVLLSN
Sbjct: 403 KLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSN 462

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG-DETHPRYNEIEVMLG 359
           IYA +  W+++ ++R IMK K VKK PG S+IE+D ++++F  G D+ HP   +I+ +  
Sbjct: 463 IYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWE 522

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           EI  +++L GY  NT    +D++EEEKE  +  HSEK+AIA+G++  K G  IRIVKNLR
Sbjct: 523 EILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLR 582

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH  TK+IS+V+ RE IVRDRNRFHHF+ G CSC+ YW
Sbjct: 583 VCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 35/256 (13%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F ++   +   +N ++  ++   +  +A   +  M    +  + ++   ++ A T 
Sbjct: 72  AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS-------------------------- 135
           +  +  G   H  I R   +  V +  +LV MY+                          
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSM 191

Query: 136 -----KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
                KCG +  A + F  M  RN++TW+ +I G A N   EK+++LF LMK+ GV  NE
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANE 251

Query: 191 VTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
              VSV+  C  +G +E G R H   ++    +   L     LVD+Y R G +++A+ V 
Sbjct: 252 TVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILG--TALVDMYWRCGEIEKAIRVF 309

Query: 250 NKMPMKPHAGAWGALL 265
            ++P K  + +W +++
Sbjct: 310 EELPDKD-SLSWSSII 324


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/464 (48%), Positives = 308/464 (66%), Gaps = 4/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+    +   ++VFD + + DV+  T+++   A  G++  AR++FD MP R+ ++W  M
Sbjct: 201 MYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVM 260

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY       EAL  F+ M  HD VK NE  +VS+LSAC HLGALDQG+W HVYI++NR
Sbjct: 261 VAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNR 320

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           + ++  + TAL+DMY+KCG ++ A   F G+ +R++ TWTS+I GL+M+G G + L  FS
Sbjct: 321 ILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFS 380

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G +P+++T + VL GC   GLVEEG   F  M   +GI P LEHYGCL+DL GRA
Sbjct: 381 EMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRA 440

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH-GAYVLL 298
           GRL+ A + I  MPM+P   AW ALL+ACR++ + ++GE     + EL   +H G YVLL
Sbjct: 441 GRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLL 500

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SN+YA    W+ V  VR+ M  +G +  PGCS IE+D  VHEF A D+ HPR +EI   L
Sbjct: 501 SNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKL 560

Query: 359 GEISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            E+ RR+ +  GYV +T  V++D+ EE+KE  +  HSEK+A+AFGL+S +EG  IRI KN
Sbjct: 561 NEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQEGT-IRITKN 619

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR C DCH   K IS VFNREI+VRDR+RFH F+ G CSC  YW
Sbjct: 620 LRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 44/282 (15%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDP-IAWNAMLAGYAQCGKSREALHLFHLMQIH--DV 85
           +I +   C ++  AR +FD+ P   P I WN M+  Y++   S+E+L+LFH M  H    
Sbjct: 93  LIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPT 152

Query: 86  KLNEVSMVSVLSACT-HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
             ++ +   V +AC+ H      G   H  + ++  +  + +G +LV+MYS    M  A 
Sbjct: 153 SADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAK 212

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ----------AG--------- 185
             F  M +R+V TWTSV+ G AM G   ++ ELF +M            AG         
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNE 272

Query: 186 -------------VRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPWLEHY 229
                        V+PNE   VS+L  C  +G +++G+    + D  R    I       
Sbjct: 273 ALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNR----ILLSSNIS 328

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
             L+D+Y + GR+D A  V + +  K     W ++++   M+
Sbjct: 329 TALIDMYAKCGRIDCARRVFDGL-HKRDLLTWTSMISGLSMH 369


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/461 (48%), Positives = 309/461 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +G  +KVFD + + DV+    MI+   K GD + A K+F EMPER+  +W +M
Sbjct: 157 LYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSM 216

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYAQCGKS+EA+ LF  M+   +  NEV++V+VL AC  +G L  GR  H +  R+  
Sbjct: 217 IGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY 276

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  + +   L+DMY KCG +  A   F  M+ER V +W+++I GLA +G  E +L LF+ 
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   GV+PN VTF+ +L  C  +G+VE+GR++F SM R+YGI P +EHYGC+VDL+ RAG
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAG 396

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA + I  MP+ P+   WGALL  C+++KN ++ E A+R L +L+  N G YV+LSN
Sbjct: 397 LLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSN 456

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAE+  W+ V  VR++M+ +GVKK PG S I V+  V+ F AGD+THP+  EI     +
Sbjct: 457 IYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEK 516

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + +R+KL GYV NT+ V+ D+EE++KE  L +HSEK+A+ FGLI    G  IRI+KNLRV
Sbjct: 517 LLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRV 576

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+IS V  REI+VRDRNRFH FK G CSC  YW
Sbjct: 577 CEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 33/266 (12%)

Query: 31  SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
           S CA       A+ +F  +   +   WN  L  +A+     +A+ LF+ ++  D+  +  
Sbjct: 55  SVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHY 114

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +   VL AC+ L  +  G+  H Y+E+  L+  + L   +V +Y+ CG +  A   F  M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174

Query: 151 KERNVYT-------------------------------WTSVIGGLAMNGAGEKSLELFS 179
            +R+V T                               WTS+IGG A  G  +++++LF 
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+ AG+ PNEVT V+VL  C  +G +  GR   D   R  G E  +     L+D+Y + 
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS-GYEKNIRVCNTLIDMYVKC 293

Query: 240 GRLDEALDVINKMPMKPHAGAWGALL 265
           G L++A  + + M  +    +W A++
Sbjct: 294 GCLEDACRIFDNMEERT-VVSWSAMI 318


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 315/463 (68%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +++FD + E D V  T M+   A   D + AR++ + MP++D +AWNA+
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y Q GK  EAL +FH +Q+  ++KLN++++VS LSAC  +GAL+ GRW H YI+++ 
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           ++M   + +AL+ MYSKCG++ K+ + F  +++R+V+ W+++IGGLAM+G G +++++F 
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++A V+PN VTF +V   C   GLV+E    F  M   YGI P  +HY C+VD+ GR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L++A+  I  MP+ P    WGALL AC+++ N  + E+A  +L+ELE +N GA+VLLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA+   W+ V  +R+ M+  G+KK PGCS IE+D  +HEF +GD  HP   ++   L 
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           E+  +LK  GY    + V+  IEEEE KE +L  HSEK+AI +GLIS +    IR++KNL
Sbjct: 636 EVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNL 695

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH V K+IS++++REIIVRDR RFHHF+ G+CSC  +W
Sbjct: 696 RVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 155/313 (49%), Gaps = 36/313 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++I     CGD+D A K+F  + E+D ++WN+M+ G+ Q G   +AL LF  M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             DVK + V+MV VLSAC  +  L+ GR    YIE NR+ + +TL  A++DMY+KCG++ 
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV--------------R 187
            A   F  M+E++  TWT+++ G A++   E + E+ + M Q  +              +
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344

Query: 188 PNE------------------VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
           PNE                  +T VS L  C  VG +E GR    S  +++GI       
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR-WIHSYIKKHGIRMNFHVT 403

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
             L+ +Y + G L+++ +V N +  K     W A++    M+           K+ E   
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANV 462

Query: 290 KNHGAYVLLSNIY 302
           K +G  V  +N++
Sbjct: 463 KPNG--VTFTNVF 473



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 157/336 (46%), Gaps = 18/336 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-H 78
           +P    +   ++A +    ++ ARK+FDE+P+ +  AWN ++  YA       ++  F  
Sbjct: 61  DPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLD 120

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           ++       N+ +   ++ A   + +L  G+  H    ++ +   V +  +L+  Y  CG
Sbjct: 121 MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG 180

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +++ A   F  +KE++V +W S+I G    G+ +K+LELF  M+   V+ + VT V VL 
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +  +E GR+   S   E  +   L     ++D+Y + G +++A  + + M  K + 
Sbjct: 241 ACAKIRNLEFGRQ-VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES-KNWDRVINVRQI 317
             W  +L+    Y  +E  E A   L  +  K+  A+  L + Y ++ K  + +I   ++
Sbjct: 300 -TWTTMLDG---YAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHEL 355

Query: 318 MKAKGVK--------KLPGCS---VIEVDREVHEFF 342
              K +K         L  C+    +E+ R +H + 
Sbjct: 356 QLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYI 391


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/426 (50%), Positives = 299/426 (70%), Gaps = 2/426 (0%)

Query: 38  DVDLARKMFDEMPERD--PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSV 95
            ++ AR++FD MP+RD   ++WNAM+A Y Q  +  EA  LF  M++ +V L++    S+
Sbjct: 144 SLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASM 203

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           LSACT LGAL+QG+W H YIE++ +++   L T ++DMY KCG + KA + F  + ++ +
Sbjct: 204 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGI 263

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W  +IGGLAM+G GE ++ELF  M++  V P+ +TFV+VL  C   GLVEEG+ +F  
Sbjct: 264 SSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQY 323

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           M    G++P +EH+GC+VDL GRAG L+EA  +IN+MP+ P AG  GAL+ ACR++ NTE
Sbjct: 324 MTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTE 383

Query: 276 MGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD 335
           +GE   +K++ELE  N G YVLL+N+YA +  W+ V  VR++M  +GVKK PG S+IE +
Sbjct: 384 LGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESE 443

Query: 336 REVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSE 395
             V EF AG   HP+  EI   L EI   ++  GYV +T+ V++DI+EEEKE+ L  HSE
Sbjct: 444 SGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSE 503

Query: 396 KVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKC 455
           K+AIAFGL+  K G  +RI KNLR+C DCH  +K+ISKV++REII+RDRNRFHHF+ G C
Sbjct: 504 KLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGC 563

Query: 456 SCKGYW 461
           SCK YW
Sbjct: 564 SCKDYW 569



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GY +K   GI E D    T +I    KCG ++ A ++F+E+P++   +WN M+ G A  G
Sbjct: 221 GYIEK--SGI-ELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHG 277

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLG 127
           K   A+ LF  M+   V  + ++ V+VLSAC H G +++G+    Y+ E   LK  +   
Sbjct: 278 KGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF 337

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGL 165
             +VD+  + G + +A      + E  V     V+G L
Sbjct: 338 GCMVDLLGRAGLLEEARKL---INEMPVNPDAGVLGAL 372



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 104/229 (45%), Gaps = 7/229 (3%)

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GY +   +R  + ++  M    V  N+ +   ++ AC    A+++G+  H ++ +    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                   L+ MY    ++ +A   F  M  ++RN  +W ++I     +    ++  LF 
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+   V  ++    S+L  C  +G +E+G+     + +  GIE   +    ++D+Y + 
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKC 245

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           G L++A +V N++P K    +W  ++    M+     GE A     E+E
Sbjct: 246 GCLEKASEVFNELPQKG-ISSWNCMIGGLAMHGK---GEAAIELFKEME 290


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/464 (46%), Positives = 309/464 (66%), Gaps = 5/464 (1%)

Query: 1   MYAELGCLGYCQKVFDGI---HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           MYA+ G +   Q VFD +    +P+     A+I    K G VD+AR +FD+M  RD I +
Sbjct: 281 MYAKCGDIAQAQAVFDAVGRGQKPEP--WNAIIDGYCKLGHVDVARSLFDQMGARDVITF 338

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+ GY   G+ R+AL LF  M+ H ++ +  ++VS+L+AC  LGAL  GR  H  IE+
Sbjct: 339 NSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQ 398

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             ++  V LGTAL+DMY KCG +++A   F  M ER+V+TWT++I GLA NG G+ +LE 
Sbjct: 399 RIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALES 458

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  MK+ G +P  VT+++VL  C    L++EGR HF+ MR  + + P +EHYGC++DL  
Sbjct: 459 FCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLA 518

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G LDEA+ ++  MPM+P+A  WG++L+ACR++KN ++   A+  L++L  +    YV 
Sbjct: 519 RSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQ 578

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L NIY +S+ W     VR +M+ +GVKK  G S I V  +VH+F A D++HP   EI  M
Sbjct: 579 LYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAM 638

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + EI+ RLK  GY   T+ +  D++EEEKE  L  HSEK+AIAFGLISL   +PI IVKN
Sbjct: 639 MEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKN 698

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   K++S+++NREIIVRDR+RFHHF++G CSC  +W
Sbjct: 699 LRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 147/284 (51%), Gaps = 33/284 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA +G     ++ FD I   D V    +I    + G +D AR++  + PER+ ++W ++
Sbjct: 149 MYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY++ G+  +A++ F+ M    V  +EV+++  LSAC+ L  LD GR  H+ + + R+
Sbjct: 209 IAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRI 268

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
           +MT  L  AL+DMY+KCG++ +A   F           W                     
Sbjct: 269 RMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFD 328

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R+V T+ S+I G   +G    +L+LF  M++ G+R +  T VS+L  C  +G +  
Sbjct: 329 QMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPH 388

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           GR    S+ +   +E  +     L+D+Y + GR+DEA  V ++M
Sbjct: 389 GRALHASIEQRI-VEEDVYLGTALLDMYMKCGRVDEATAVFHRM 431



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +++A        ERNV +WTS+I G +  G    ++  F+ M   GV P+EV  +  L
Sbjct: 185 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGAL 244

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  +  ++ GR     + ++  I         L+D+Y + G + +A  V + +     
Sbjct: 245 SACSKLKNLDLGRLLHLLVGQKR-IRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQK 303

Query: 258 AGAWGALLNA-CRM 270
              W A+++  C++
Sbjct: 304 PEPWNAIIDGYCKL 317


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/463 (46%), Positives = 314/463 (67%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G +   QKVFD + E  +V  TAMI+  AK G+V+ AR +FD M ERD ++WN M
Sbjct: 168 IYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVM 227

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           + GY+Q G   +AL LF  L+     K +E+++V+ LSAC+ +GAL+ GRW HV++  +R
Sbjct: 228 IDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSR 287

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++ V + TAL+DMYSKCG++ +A+  F     +++  W ++I G AM+G  + +L LF 
Sbjct: 288 IRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFD 347

Query: 180 LMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M+   G++P ++TF+  L+ C   GLV EG + F+SM +EYGI+P +EHYGCLV L GR
Sbjct: 348 EMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGR 407

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG+L  A ++I  M M+  +  W ++L +C+++    +G+  +  L+     N G YVLL
Sbjct: 408 AGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLL 467

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA   +++ V  VR +MK KG+ K PG S IE+D +VHEF AGD  H +  EI  ML
Sbjct: 468 SNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTML 527

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            ++S R+K  GYV NTN V++D+EE EKE +L  HSE++AIA+GLIS K G P++I KNL
Sbjct: 528 RKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNL 587

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH VTK+ISK+  R+I++RDRNRFHHF +G CSC  +W
Sbjct: 588 RVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 44/289 (15%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           IH    V    +  A A  G +  +  +F +  + D   + A +   +  G   +A  L+
Sbjct: 57  IHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLY 116

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             +    +  NE +  S+L +C+       G+  H ++ +  L +   + T LVD+Y+K 
Sbjct: 117 VQLLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKG 172

Query: 138 -------------------------------GNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
                                          GN+  A   F  M ER++ +W  +I G +
Sbjct: 173 GDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYS 232

Query: 167 MNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGI 222
            +G    +L LF  L+     +P+E+T V+ L  C  +G +E GR      +S R    +
Sbjct: 233 QHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNV 292

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +        L+D+Y + G L+EA+ V N  P K    AW A++    M+
Sbjct: 293 KVCT----ALIDMYSKCGSLEEAVLVFNDTPRKDIV-AWNAMITGYAMH 336



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 10/154 (6%)

Query: 104 ALDQGRWAHVYIERNRLKM---TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           ++D+    H  I R+ L +      L   L   Y+  G +  ++  F    + +++ +T+
Sbjct: 39  SVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 98

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRRE 219
            I   ++NG  +++  L+  +  + + PNE TF S+L+ C      + G+  H   ++  
Sbjct: 99  AINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVLKFG 154

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            G++P++     LVD+Y + G +  A  V ++MP
Sbjct: 155 LGLDPYVA--TGLVDIYAKGGDVVSAQKVFDRMP 186


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/462 (46%), Positives = 306/462 (66%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G     + +FD + +P VV  TAM++  A  G +D AR++FD +P +D I WNAM
Sbjct: 163 MYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAM 222

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           + GY Q GK  EAL LF  M     + +EV++V VLSA   LG ++ G+W H Y++ +R 
Sbjct: 223 IDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRC 282

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++ V + TALVDMY KCG++  A+  F G+  +++  W ++I G AM+G   K+LE+F 
Sbjct: 283 VQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFV 342

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            ++  G+ P ++TF+ +L  C   GLVEEGR  F SM  EYGI+P +EHYGC+VDL GRA
Sbjct: 343 QLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRA 402

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G ++EA  ++  + + P A  W +LL ACR++KN  +G+  +  LV     N G Y+LLS
Sbjct: 403 GLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLS 462

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA    W+ V  VR +MKA G++K PGCS IE+DR+V+EF AGD +HP  +EI  ML 
Sbjct: 463 NIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLD 522

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           +++  +K  G+V  T  V++D++E  KE  L  HSEK+A+AFGLIS + G  I+IVKNLR
Sbjct: 523 KMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLR 582

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            C DCH V K+ISK+ +R+I+ RDRNRFHHF +G C+C  YW
Sbjct: 583 ACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 42/287 (14%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A A  G +D +  +     +   I + + +  ++  G     L L   M    +     +
Sbjct: 65  AYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHT 124

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM------------------ 133
           + + L AC     L  GR  H Y  +  L     + TAL+ M                  
Sbjct: 125 LSASLPACR---GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMP 181

Query: 134 -------------YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                        Y+  G ++ A   F G+  ++   W ++I G   +G   ++L+LF  
Sbjct: 182 DPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRR 241

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M ++   P+EVT V VL     +G VE G+     ++    ++  +     LVD+Y + G
Sbjct: 242 MLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCG 301

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
            L++A+ V + +  K     W A++N   M+ +       SRK +E+
Sbjct: 302 SLEDAVAVFHGIGNKDIV-VWNAMINGYAMHGD-------SRKALEM 340


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/461 (45%), Positives = 309/461 (67%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G       +FD I +PD V   ++I   AK G +D+A  +F +M E++ I+W  M+
Sbjct: 189 YAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMI 248

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GY Q G  +EAL LFH MQ  DV+ + VS+ + LSAC  LGAL+QG+W H Y+ + R++
Sbjct: 249 SGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIR 308

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           M   LG  L+DMY+KCG+M +A++ F  ++ ++V  WT++I G A +G G +++  F  M
Sbjct: 309 MDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEM 368

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           ++ G++PN +TF +VL  C   GLVEEG+  F +M R+Y ++P +EHYGC+VDL  RAG 
Sbjct: 369 QKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGL 428

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEA   I +MP+KP+A  WGALL ACR++KN E+GE     L+ ++  + G YV  +NI
Sbjct: 429 LDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANI 488

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           +A  K WD+    R++MK +GV K+PGCS I ++   HEF AGD +HP   +I+     +
Sbjct: 489 HAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIM 548

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLC-KHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
            R+L+  GYV     ++ D+ ++++ +T+  +HSEK+AI +GLI  K G  IRI+KNLRV
Sbjct: 549 RRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRV 608

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH VTK+ISK++ R+I++RDR RFHHF++GKCSC  YW
Sbjct: 609 CKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 43/303 (14%)

Query: 22  DVVCQTAMISACAKCGDVDL---ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           D    T  +S C      D    A+ +FD     D   WN M+ G++   +   +L L+ 
Sbjct: 74  DSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQ 133

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M       N  +  S+L AC++L AL++    H  I +   +  V    +L++ Y+  G
Sbjct: 134 RMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATG 193

Query: 139 N-------------------------------MNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           N                               M+ A+  F  M E+N  +WT++I G   
Sbjct: 194 NFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQ 253

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWL 226
            G  +++L+LF  M+ + V P+ V+  + L  C  +G +E+G+  H    +    ++  L
Sbjct: 254 AGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVL 313

Query: 227 EHYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285
              GC L+D+Y + G + EAL+V   +  K    AW AL++    Y     G  A  K +
Sbjct: 314 ---GCVLIDMYAKCGDMGEALEVFKNIQRKS-VQAWTALISG---YAYHGHGREAISKFM 366

Query: 286 ELE 288
           E++
Sbjct: 367 EMQ 369


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/461 (48%), Positives = 300/461 (65%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L     VFD + E       AMI+  A+  D+  A K+F EM ERD ++W A+
Sbjct: 54  MYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAV 113

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ G   E+L++F+ M+   +K +   M SVLSAC  L AL+ GR  H Y+ ++  
Sbjct: 114 IAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGF 173

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + +G+ALVDMY+K G+M  A   F  M +RN  +W S+I G A +G G  ++ LF  
Sbjct: 174 ALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQ 233

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M QAG++PNE++FV VL  C   GLV EGR +F+ M + YGI P + HY C++DL GRAG
Sbjct: 234 MLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAG 293

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            LDEA + IN MP++P    WGALL ACR++ NTE+ +  +  L+ +E +  G YVLLSN
Sbjct: 294 CLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSN 353

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  WD    VR++MK +GV K PG S IEV   +H F AG+ +HP+  EI   L  
Sbjct: 354 IYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLES 413

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +SR++K AGYV N N V+ D+E++EKE +L  HSEK+AIAFG+I+   G  IR+ KNLRV
Sbjct: 414 LSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRV 473

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V K IS  F R+I+VRD NRFHHFK+G+CSC  YW
Sbjct: 474 CGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 33/218 (15%)

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG------ 138
           VK N+ ++ +V+ AC  + +L+QG+ AH YI +   +  V + TALV MY++CG      
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 139 -------------------------NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
                                    +M KA+  F+ M ER+V +WT+VI G A NG G++
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           SL +F+ M++ G++ +     SVL  C  +  +E GR+ F +   + G    +     LV
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVVGSALV 184

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           D+Y ++G +++A  V +KMP +    +W +++  C  +
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEV-SWNSIITGCAQH 221



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           GV+PN+ T  +V++ C  +  +E+G++  + + +  G E  +     LV +Y R G L++
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIK-MGFESDVVVQTALVHMYARCGSLED 63

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           A  V +KM  +     W A++      +N +M + A +   E+  ++  ++  +   YA+
Sbjct: 64  AGHVFDKMSERS-TRTWNAMITG--HAQNRDMKK-ALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 305 SKNWDRVINVRQIMKAKGVKK--------LPGC---SVIEVDREVHEF 341
           +   D  +NV   M+  G+K         L  C   + +E+ R+ H +
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAY 167


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/466 (47%), Positives = 310/466 (66%), Gaps = 9/466 (1%)

Query: 1   MYAELGCLGYCQKVFDGI-----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPI 55
           MYA+ G  G  ++VFD +      +P      AMI    K G VD+AR +FD+M + D I
Sbjct: 281 MYAKCGDTGRAREVFDALGRGRGPQP----WNAMIDGYCKVGHVDIARSLFDQMEDHDVI 336

Query: 56  AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
            +N+++ GY   G+ REAL LF  M+ H +  +  +MV +L+A   LGAL QGR  H  I
Sbjct: 337 TFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACI 396

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           E+  ++  V LGTAL+DMY KCG + +AM  F  M  R+V+TW+++IGGLA NG G+ +L
Sbjct: 397 EQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAAL 456

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           E F  MK  G   N VT+++VL  C    L++EGR +FD MR  + I P +EHYGC++DL
Sbjct: 457 EHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDL 516

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
            GR+G LDEA+D++  MPM+P+A  W ++L+ACR++KN ++ + A+  L++LE      Y
Sbjct: 517 LGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVY 576

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
           V + NIY +S+ W+    +R++M+ +GVKK  G S I V  +VH+F  GD +HP+  EI 
Sbjct: 577 VQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIV 636

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
           VM+ EI RRLK AGY   T+ +  D++EEEKE  L  HSEK+AIAFGL+SL   +P+ I+
Sbjct: 637 VMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHII 696

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH   K+IS+++NREIIVRDR+RFHHF+ G CSC  +W
Sbjct: 697 KNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 148/297 (49%), Gaps = 34/297 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAELG  G  ++ FD     DVV  T +IS  AK G +D AR++    P R+ + W  +
Sbjct: 149 MYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY++ G++ EA+  F+ M    +  +EV+++ +LSAC  L  L+ G   H+ +   R+
Sbjct: 209 ISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRM 268

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
            M+  L  AL+DMY+KCG+  +A + F           W                     
Sbjct: 269 LMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFD 328

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M++ +V T+ S+I G    G   ++L LF+ M++ G+  +  T V +L     +G + +
Sbjct: 329 QMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQ 388

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           GR     + +   +E  +     L+D+Y + GR++EA+    +M ++     W A++
Sbjct: 389 GRALHACIEQRL-VERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSAMI 443



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 109/306 (35%), Gaps = 75/306 (24%)

Query: 18  IHEPDVVCQTAMISACAKCGD---VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74
           +H P        +++C    D   +  A  +FD MP    +   A+ A +         +
Sbjct: 29  LHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPCSTFLFDTALRACFRASSGPDRPI 88

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTL-GTALVD 132
            L+  M   DV  +  +   +   C   GA +  GR  H    R  L   V L  + ++ 
Sbjct: 89  ILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIH 148

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA-------------------------- 166
           MY++ G    A   F     ++V  WT+VI GLA                          
Sbjct: 149 MYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGL 208

Query: 167 -----MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC--------------------- 200
                  G   ++++ F+ M   G+ P+EVT + +L  C                     
Sbjct: 209 ISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRM 268

Query: 201 -----CVVGLVE---------EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
                 VV L++           RE FD++ R  G +PW      ++D Y + G +D A 
Sbjct: 269 LMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPW----NAMIDGYCKVGHVDIAR 324

Query: 247 DVINKM 252
            + ++M
Sbjct: 325 SLFDQM 330


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/462 (46%), Positives = 302/462 (65%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G     + +FD + +P VV  TAM++  AK G +D AR++FD MP +D I WNAM
Sbjct: 174 MYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAM 233

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           + GY Q G+  EAL LF  M    V  +EV+++  LSA   LG  + GRW H Y++ +R 
Sbjct: 234 IDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRR 293

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++   +GTAL+DMY KCG++  A+  F  + ++++  W ++I G AM+G   K+LE+FS
Sbjct: 294 VQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFS 353

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            ++  G+ P ++TF+ +L  C   GLV+EG + F SM  EY I P +EHYGC+VDL GRA
Sbjct: 354 QLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRA 413

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G ++EA  ++  M + P    W +LL ACR++KN  +G+  +  LV     N G Y+LLS
Sbjct: 414 GLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLS 473

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA   NW+ V  VR +MKA G++K PGCS IEV R+V+EF AGD +HPR +EI  ML 
Sbjct: 474 NIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLE 533

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           +++  +K  G+V  T  V++D++E  KE  L  HSEK+A+AFGLIS   G  I+IVKNLR
Sbjct: 534 KMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLR 593

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            C DCH V K+ISK+  R+I+ RDRNRFHHF +G C+C  YW
Sbjct: 594 ACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 116/290 (40%), Gaps = 42/290 (14%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A A    +DL   +    P+   + + + +  ++  G    AL L   M    +     +
Sbjct: 76  AYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHT 135

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM------------------ 133
           + S L AC     L  GR  H Y  +  L     + TAL+ M                  
Sbjct: 136 LSSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMP 192

Query: 134 -------------YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                        Y+K G ++ A + F GM  ++   W ++I G   +G   ++L LF  
Sbjct: 193 DPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRW 252

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M ++GV P+EV  +  L     +G  E GR     ++    ++        L+D+Y + G
Sbjct: 253 MLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCG 312

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
            L++A+ V N +  K     W A++N   M+ +       SRK +E+ ++
Sbjct: 313 SLEDAVSVFNSIGDKDIV-VWNAMINGYAMHGD-------SRKALEMFSQ 354


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/462 (46%), Positives = 302/462 (65%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G     + +FD + +P VV  TAM++  AK G +D AR++FD MP +D I WNAM
Sbjct: 173 MYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAM 232

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           + GY Q G+  EAL LF  M    V  +EV+++  LSA   LG  + GRW H Y++ +R 
Sbjct: 233 IDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRR 292

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++   +GTAL+DMY KCG++  A+  F  + ++++  W ++I G AM+G   K+LE+FS
Sbjct: 293 VQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFS 352

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            ++  G+ P ++TF+ +L  C   GLV+EG + F SM  EY I P +EHYGC+VDL GRA
Sbjct: 353 QLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRA 412

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G ++EA  ++  M + P    W +LL ACR++KN  +G+  +  LV     N G Y+LLS
Sbjct: 413 GLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLS 472

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA   NW+ V  VR +MKA G++K PGCS IEV R+V+EF AGD +HPR +EI  ML 
Sbjct: 473 NIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLE 532

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           +++  +K  G+V  T  V++D++E  KE  L  HSEK+A+AFGLIS   G  I+IVKNLR
Sbjct: 533 KMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLR 592

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            C DCH V K+ISK+  R+I+ RDRNRFHHF +G C+C  YW
Sbjct: 593 ACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 116/290 (40%), Gaps = 42/290 (14%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A A    +DL   +    P+   + + + +  ++  G    AL L   M    +     +
Sbjct: 75  AYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHT 134

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM------------------ 133
           + S L AC     L  GR  H Y  +  L     + TAL+ M                  
Sbjct: 135 LSSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMP 191

Query: 134 -------------YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                        Y+K G ++ A + F GM  ++   W ++I G   +G   ++L LF  
Sbjct: 192 DPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRW 251

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M ++GV P+EV  +  L     +G  E GR     ++    ++        L+D+Y + G
Sbjct: 252 MLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCG 311

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
            L++A+ V N +  K     W A++N   M+ +       SRK +E+ ++
Sbjct: 312 SLEDAVSVFNSIGDKDIV-VWNAMINGYAMHGD-------SRKALEMFSQ 353


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/465 (46%), Positives = 311/465 (66%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDL----ARKMFDEMPERDPIA 56
           M  ELG   +   V  G  E   V  T +   C  C D       A+K+FDE P +D + 
Sbjct: 241 MRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVT 300

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W+AM+ GYA+ G S  A+ LF  MQ+  V  +E++MVSVLSAC  LGAL+ G+W   YIE
Sbjct: 301 WSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIE 360

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R  +  +V L  AL+DM++KCG++++A+  F  MK R + +WTS+I GLAM+G G +++ 
Sbjct: 361 RKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVL 420

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F  M + GV P++V F+ VL  C   GLV++G  +F++M   + I P +EHYGC+VD+ 
Sbjct: 421 VFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDML 480

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            RAGR++EAL+ +  MP++P+   W +++ AC      ++GE  +++L+  E  +   YV
Sbjct: 481 SRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYV 540

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSNIYA+   W++   VR++M  KG++K+PG ++IE++ E++EF AGD++H +Y EI  
Sbjct: 541 LLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYE 600

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
           M+ E+ R +K AGYV  T+ V+ DI+EE+KED L +HSEK+AIAF L+S   G PIRIVK
Sbjct: 601 MVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVK 660

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLRVC DCH  TK ISKV+NREI+VRDRNRFHHFK G CSC  +W
Sbjct: 661 NLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 12/263 (4%)

Query: 19  HEPDVVCQTAMIS----ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR-EA 73
           H P V+ + A  S    A      V          P  D   +N ++  +AQ   S+  A
Sbjct: 152 HNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRAFAQTTHSKPHA 211

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L  ++ M+ H V  N+ +   VL AC  +  L+ G   H  + +   +    +   LV M
Sbjct: 212 LRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHM 271

Query: 134 YSKC-----GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           Y  C          A   F     ++  TW+++IGG A  G   +++ LF  M+  GV P
Sbjct: 272 YCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCP 331

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           +E+T VSVL  C  +G +E G+   +S      I   +E    L+D++ + G +D A+ V
Sbjct: 332 DEITMVSVLSACADLGALELGK-WLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKV 390

Query: 249 INKMPMKPHAGAWGALLNACRMY 271
             +M ++    +W +++    M+
Sbjct: 391 FREMKVRTIV-SWTSMIVGLAMH 412


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/462 (47%), Positives = 317/462 (68%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +    ++F  +   DVV  T+M++   KCG V+ AR+MFDEMP R+   W+ M
Sbjct: 161 MYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIM 220

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYA+     +A+ LF  M+   V  NE  MVSV+S+C HLGAL+ G  A+ Y+ ++ +
Sbjct: 221 INGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + LGTALVDM+ +CG++ KA+  F G+ E +  +W+S+I GLA++G   K++  FS 
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   G  P +VTF +VL  C   GLVE+G E +++M++++GIEP LEHYGC+VD+ GRAG
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L EA + I KM +KP+A   GALL AC++YKNTE+ E     L++++ ++ G YVLLSN
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSN 460

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG-DETHPRYNEIEVMLG 359
           IYA +  WD++ ++R +MK K VKK PG S+IE+D ++++F  G D+ HP   +I     
Sbjct: 461 IYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWE 520

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           EI  +++L GY  NT    +D++EEEKE ++  HSEK+AIA+G++  K G  IRIVKNLR
Sbjct: 521 EILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLR 580

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH VTK+IS+V+ RE+IVRDRNRFHHF+ G CSC+ YW
Sbjct: 581 VCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 113/255 (44%), Gaps = 33/255 (12%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F ++   +   +N ++  ++   +  +A   +  M    +  + ++   ++ A + 
Sbjct: 70  AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS-------------------------- 135
           +  +  G   H  I R   +  V +  +LV MY+                          
Sbjct: 130 MECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189

Query: 136 -----KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
                KCG +  A + F  M  RN++TW+ +I G A N   EK+++LF  MK+ GV  NE
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANE 249

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
              VSV+  C  +G +E G   ++ + + + +   L     LVD++ R G +++A+ V  
Sbjct: 250 TVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFE 308

Query: 251 KMPMKPHAGAWGALL 265
            +P +  + +W +++
Sbjct: 309 GLP-ETDSLSWSSII 322


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 292/442 (66%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  +V  TAMI+  AK G +D AR +FD + ERD I WN M+ GYAQ G   E L LF  
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+ NEV++++VLSAC   GAL+ GRW H YIE N + + V +GT+L+DMYSKCG+
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  +  ++V  W S++ G AM+G  + +L LF  M   G +P ++TF+ VL  
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNA 182

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV EG + F SM+ EYGIEP +EHYGC+V+L GRAG L+EA +++  M +     
Sbjct: 183 CSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPV 242

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WG LL ACR++ N  +GE  +  LV     N G YVLLSNIYA + NW+ V  VR +MK
Sbjct: 243 LWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMK 302

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G +K PGCS IEV+ +VHEF AGD  HP+  EI  ML EI+  LK  GY   T+ V++
Sbjct: 303 ESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLH 362

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+ +KE +L  HSEK+A+AFGLI+ K G  I+IVKNLRVC DCH VTK+ISK+  R++
Sbjct: 363 DLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKV 422

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RDRNRFHHF  G CSC  YW
Sbjct: 423 VMRDRNRFHHFVNGLCSCGDYW 444


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/460 (46%), Positives = 311/460 (67%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   ++VFDG+ E D+V    MI   A  G+VDLAR++F+ M +RD  +W++M+
Sbjct: 116 YVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMM 175

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + Y +  +S++AL L+  M+   V  +  +MVSVLSAC+ +GAL  G   H ++E N ++
Sbjct: 176 SAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVE 235

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + V LGTAL+DMY+KCG++  ++  F  M  ++V TW+S+I GLA +G G  +L LFS M
Sbjct: 236 LDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRM 295

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
              G++PNEVTF+ VL  C  +GLV +G+++F SM   +G+ P ++HYGC+VDL GR+G 
Sbjct: 296 LSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGH 355

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           ++EA  +I  MP +P A  W ALL ACR+YKN E+ E A  KL  L+    G YVLLSNI
Sbjct: 356 IEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNI 415

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA++ +W+ V  +R+ ++ + ++++PG S IE    +HEF +GD +HPR  EI  MLGE+
Sbjct: 416 YAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEM 475

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             RL+ AGY   T  V+ DI+E+ KE  L +HSEK+A+AFGL++   G  +RI KNLR C
Sbjct: 476 MDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRAC 535

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K+I+ ++ R++I+RDRNRFHHF EG+CSCK YW
Sbjct: 536 EDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 63/190 (33%)

Query: 128 TALVDMYSKCGNMN-------------------------------KAMDFFWGMKERNVY 156
           TALV+ Y+K G  +                               +A   F GM+ER++ 
Sbjct: 79  TALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMV 138

Query: 157 TWTSVIGGLAMNG----------------------------AGEKS---LELFSLMKQAG 185
           +W ++I G A+NG                             G +S   LEL+  M+ A 
Sbjct: 139 SWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAAC 198

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           V P+  T VSVL  C  +G +  G E         G+E  ++    L+D+Y + G ++ +
Sbjct: 199 VNPDCTTMVSVLSACSDMGALAVGAE-VHQFVESNGVELDVKLGTALIDMYAKCGDIENS 257

Query: 246 LDVINKMPMK 255
           + V + MP+K
Sbjct: 258 VRVFHSMPVK 267


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/461 (47%), Positives = 303/461 (65%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            Y+  G L   + VFD   E DVV   +MI  C + G++  A  +F +M ER+ I+WN M
Sbjct: 136 FYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMM 195

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYAQ G+ +EAL LF  MQ+ D + N   +VSVLSAC+ LGALD G W H YI +  +
Sbjct: 196 ISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCV 255

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   L  AL+DMY+KCG+++ AM  F   ++R+V  +T+ I GLAMNG  E++L+LF  
Sbjct: 256 RVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQ 315

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK  G+ P+ V++++VL  C   G VE+G  +F SM   +GI P L+HY C+VDL GRAG
Sbjct: 316 MKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAG 375

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA   +  MP+KP    WGALL ACR+Y N EMG+     LVE +  + G Y+LLSN
Sbjct: 376 LLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSN 435

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAES   +    VR+ M+ + V ++PGCS+IEV   VHEFF+GD +H +  EI +M  E
Sbjct: 436 IYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEE 495

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I + +K  GY   T  V++D+EEEEKE  +  HSEK+A+AFG +  K G  +RIVKN+R+
Sbjct: 496 IVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRI 555

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SKVF R+I +RDR  FHHF+EG CSCK YW
Sbjct: 556 CSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 121/301 (40%), Gaps = 43/301 (14%)

Query: 9   GYCQKVFDGI-HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPI-AWNAMLAGYAQ 66
            + Q + +G+ H P  +      SA    GD+D A  +         +  +N  + G+++
Sbjct: 7   AHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSR 66

Query: 67  C---GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
               G    ++ LF  M +  +  N  +   +   C++  A D GR  H  + +N  +M 
Sbjct: 67  ARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMD 126

Query: 124 VTLGTALVDMYSKCGNMN-------------------------------KAMDFFWGMKE 152
           V +  +++  YS CG +N                               +A+  F  M E
Sbjct: 127 VFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTE 186

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-RE 211
           RN  +W  +I G A NG  +++L LF  M+     PN    VSVL  C  +G ++ G   
Sbjct: 187 RNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWV 246

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD---EALDVINKMPMKPHAGAWGAL-LNA 267
           H    ++   ++  L     L+D+Y + G +D   +A     K  +  +  A   L +N 
Sbjct: 247 HCYIGKKCVRVDSILS--AALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNG 304

Query: 268 C 268
           C
Sbjct: 305 C 305


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/422 (48%), Positives = 293/422 (69%)

Query: 40  DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
           + A K+FD+ P+ D + W+AM+AG+ + G S  A+ LF  MQ+  V  +E++MVSVLSAC
Sbjct: 179 EFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSAC 238

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
             LGAL+ G+W   Y+E+  +  +V L  AL+DM++KCGN++KA+  F  M  R + +WT
Sbjct: 239 ADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWT 298

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           SVI GLAM+G G  ++ LF  M + G+ P++V F+ VL  C   GLV++GR +F SM R 
Sbjct: 299 SVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERN 358

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGEL 279
           + I P +EHYGC+VDL  R G + EA + + KMP +P+   W  ++ AC      ++GE 
Sbjct: 359 FSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGES 418

Query: 280 ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVH 339
            S++L++ E  +   YVLLSNIYA+ + W++   VR++M  +G+KK+PG ++IEV+ E++
Sbjct: 419 ISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMY 478

Query: 340 EFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAI 399
           EF AGD++H +Y EI  M+ E+ R +K AGYV  T+ V+ DI+EE+KED L +HSEK+AI
Sbjct: 479 EFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAI 538

Query: 400 AFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKG 459
           AF L++   G  IRIVKNLRVC DCH  TK ISKV+NREI+VRDRNRFHHFK G CSC+ 
Sbjct: 539 AFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRD 598

Query: 460 YW 461
           +W
Sbjct: 599 FW 600



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           P  D   +N ++  Y+Q   S+    LF+  M  + V  N+ +   VL  C  +G+L  G
Sbjct: 85  PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGN--MNKAMDFFWGMKERNVYTWTSVIGGLA 166
           +  H  + +   +  V +   L+ MY   G      A   F    + +  TW+++I G  
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFV 204

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
             G   ++++LF  M+  GV P+E+T VSVL  C  +G +E G+   +S   +  I   +
Sbjct: 205 RLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGK-WVESYVEKKNIPKSV 263

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           E    L+D++ + G +D+A+ +  +M  +    +W +++    M+
Sbjct: 264 ELCNALIDMFAKCGNVDKAIKLFRQMDSRTIV-SWTSVIAGLAMH 307


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/468 (46%), Positives = 315/468 (67%), Gaps = 7/468 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G L    ++FD     D+    ++++A AK G ++ ARK+FDEMPER+ I+W+ +
Sbjct: 105 MYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCL 164

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-----VKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           + GY  CGK +EAL LF  MQ+       V  N+ +M +VLSAC  LGAL+QG+W H YI
Sbjct: 165 INGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYI 224

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKS 174
           ++  +++ + LGTAL+DMY+KCG++ +A   F  +  +++V  ++++I  LAM G  ++ 
Sbjct: 225 DKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDEC 284

Query: 175 LELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
            ++FS M  +  + PN VTFV +L  C   GL+ +G+ +F  M  E+GI P ++HYGC+V
Sbjct: 285 FQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMV 344

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           DLYGR+G + EA   I  MPM+P    WG+LL+  RM  + +  E A ++L+EL+  N G
Sbjct: 345 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 404

Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
           AYVLLSN+YA++  W  V  +R  M+ KG+KK+PGCS +EV+  VHEF  GDE+      
Sbjct: 405 AYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESER 464

Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
           I  ML EI +RL+ AGYV++T  V+ D+EE++KE  L  HSEK+AIAF L+  + G P+R
Sbjct: 465 IYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVR 524

Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           I+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF +G CSC+ +W
Sbjct: 525 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/464 (45%), Positives = 316/464 (68%), Gaps = 5/464 (1%)

Query: 3   AELGCLGYCQKVFDGIHEPDV----VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           AEL  LG   K+   I E D+    V  +A+++  AKCGD+  AR++FD++ ++D  AW+
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWS 250

Query: 59  AMLAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           A++ GY +  +S EAL LF  +    +++ NEV++++V+SAC  LG L+ GRW H YI R
Sbjct: 251 ALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
            +   +V+L  +L+DM+SKCG+++ A   F  M  +++ +W S++ GLA++G G ++L  
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQ 370

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F LM+   ++P+E+TF+ VL  C   GLV+EG++ F  +   YG+    EHYGC+VDL  
Sbjct: 371 FHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLC 430

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG L EA + I  MP++P    WG++L ACR+Y N E+GE A+R L+ELE  N G Y+L
Sbjct: 431 RAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYIL 490

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           LSNIYA  K W+ V  VR++M  KG++K PGCS + +D   H F AGD +HP   EI +M
Sbjct: 491 LSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIM 550

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++  +LKL GYVA+T+ V+ +I++ +KE+++ +HSEK+A+ +GL+  + G  I I+KN
Sbjct: 551 LRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKN 610

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH + K++SK++ R+I +RDRNRFHHFK+G CSC+ YW
Sbjct: 611 LRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 141/252 (55%), Gaps = 5/252 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  +T +++  A CGD+  AR +F+ M  R+ + W +M++GY +     EAL L+  M+
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 +EV+M +++SAC  L  L  G   H +I    +K+   LG+ALV+MY+KCG++ 
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGC 200
            A   F  + +++VY W+++I G   N    ++L+LF  +   + +RPNEVT ++V+  C
Sbjct: 233 TARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISAC 292

Query: 201 CVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             +G +E GR   D + R + G    L +   L+D++ + G +D A  + + M  K    
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNN--SLIDMFSKCGDIDAAKRIFDSMSYKDLI- 349

Query: 260 AWGALLNACRMY 271
           +W +++N   ++
Sbjct: 350 SWNSMVNGLALH 361



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+P +    A + +    G V  A  +F      D + WN+ML  +      R AL  + 
Sbjct: 9   HKPSLNKLIAHVLSMGSLG-VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYT 67

Query: 79  LMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M      + +  +  S+L  C  L     G+  H  + +  L   + + T L++MY+ C
Sbjct: 68  EMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAAC 127

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A   F  M  RN   WTS+I G   N    ++L L+  M++ G  P+EVT  +++
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLV 187

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  +  +  G +   S  RE  ++        LV++Y + G L  A  V +++  K  
Sbjct: 188 SACAELKDLGVGMK-LHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKD- 245

Query: 258 AGAWGALL 265
             AW AL+
Sbjct: 246 VYAWSALI 253


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/445 (47%), Positives = 300/445 (67%), Gaps = 4/445 (0%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I +P V   TA+ +   +  +V  AR++FDE PE+   +WNAM++GY Q G +  A+ LF
Sbjct: 347 ILQPSV--STALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M +  +  N V++ S+LSAC  LGAL  G+W H  I+  RL+  V + TALVDMY+KC
Sbjct: 405 QEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++ +A   F  M ++NV TW ++I G  ++G G+++L+LF  M Q+G+ P  VTF+S+L
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSIL 523

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLV EG E F SM   YG +P  EHY C+VD+ GRAG+L  AL+ I +MP++P 
Sbjct: 524 YACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPG 583

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              WGALL AC ++KNTEM  +AS++L +L+ +N G YVLLSNIY+  +N+ +  +VRQ+
Sbjct: 584 PAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQV 643

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT-NP 376
           +K + + K PGC++IE+D + + F +GD +HP+   I  ML +++ +++ AGY A T   
Sbjct: 644 VKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTT 703

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            ++D+E+EEKE  +  HSEK+AIAFGLIS K G  IRI+KNLRVC DCH  TK ISK+  
Sbjct: 704 ALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITE 763

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R I+VRD NRFHHFK G CSC  YW
Sbjct: 764 RVIVVRDANRFHHFKNGICSCGDYW 788



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 121/262 (46%), Gaps = 3/262 (1%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           +G L +   + DG+   ++   +A++    K    +LARK+FD MPERD + WN M++G+
Sbjct: 131 VGVLLHAHSIVDGV-ASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           ++     +++ +F  M    +  +  ++ +VL+A   L     G        +  L   V
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            + T L+ +YSKCG   K    F  + + ++ ++ ++I G   N   E ++ LF  +  +
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G R N  T V ++        ++  R    ++  + GI         L  +Y R   +  
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRL-IQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 245 ALDVINKMPMKPHAGAWGALLN 266
           A  + ++ P K  A +W A+++
Sbjct: 369 ARQLFDESPEKSLA-SWNAMIS 389



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 124/278 (44%), Gaps = 8/278 (2%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            Q +  GIH  D+   T +       G V   R++F+++ + D   +N ++ G++  G  
Sbjct: 35  AQLILHGIHY-DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLP 93

Query: 71  REALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + ++ L+ HL +  +++ +  +    +SA + L     G   H +   + +   + +G+A
Sbjct: 94  KSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSA 153

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           +VD+Y K      A   F  M ER+   W ++I G + N   E S+ +F  M   G+  +
Sbjct: 154 IVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFD 213

Query: 190 EVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
             T  +VL     V  ++E R       +  + G+   +     L+ LY + G+  +   
Sbjct: 214 STTLATVLTA---VAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRI 270

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285
           + +++  +P   ++ A+++       TE      R+L+
Sbjct: 271 LFDQID-QPDLISYNAMISGYTFNHETESAVTLFRELL 307



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 36/254 (14%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +FD I +PD++   AMIS                               GY    ++  A
Sbjct: 271 LFDQIDQPDLISYNAMIS-------------------------------GYTFNHETESA 299

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  +     ++N  ++V ++        L   R       +  + +  ++ TAL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVT 192
           Y +   +  A   F    E+++ +W ++I G   NG  ++++ LF  +M Q  + PN VT
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVT 417

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             S+L  C  +G +  G+     ++ E  +E  +     LVD+Y + G + EA  + + M
Sbjct: 418 VTSILSACAQLGALSIGKWVHGLIKSER-LESNVYVSTALVDMYAKCGSIVEARQLFDLM 476

Query: 253 PMKPHAGAWGALLN 266
             K +   W A++ 
Sbjct: 477 VDK-NVVTWNAMIT 489


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/450 (46%), Positives = 305/450 (67%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           QK+F  I   ++V  TAMIS  ++ G V+ AR +FD+M E+D + W+AM++GYA+  K +
Sbjct: 3   QKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQ 62

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EAL+LF  MQ+  +K ++V+++SV+SAC  LG LD+ +W H+Y+++N L   + +  AL+
Sbjct: 63  EALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALI 122

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DMY+KCGN+  A   F  M+ RNV +WTS+I   A++G    +L+ F  MK   ++PN V
Sbjct: 123 DMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGV 182

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TFV VL  C   GLVEEGR  F SM  E+ I P  EHYGC+VDL+GRA  L +AL+++  
Sbjct: 183 TFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVET 242

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP+ P+   WG+L+ AC+++   E+GE A+++++ELE  + GA V LSNIYA+ + W  V
Sbjct: 243 MPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDV 302

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             +R +MK +G+ K  GCS IE++ +V+EF   D+ H + ++I   L E+ + LKL GY 
Sbjct: 303 GELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYT 362

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            NT  V+ D+EEE K++ +  HSEK+A+ +GL+   +G  IRIVKNLRVC DCH   K++
Sbjct: 363 PNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLV 422

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SKV+  EIIVRDR RFHH+K G CSC  YW
Sbjct: 423 SKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/445 (47%), Positives = 300/445 (67%), Gaps = 4/445 (0%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I +P V   TA+ +   +  +V  AR++FDE PE+   +WNAM++GY Q G +  A+ LF
Sbjct: 347 ILQPSV--STALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M +  +  N V++ S+LSAC  LGAL  G+W H  I+  RL+  V + TALVDMY+KC
Sbjct: 405 QEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++ +A   F  M ++NV TW ++I G  ++G G+++L+LF  M Q+G+ P  VTF+S+L
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSIL 523

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLV EG E F SM   YG +P  EHY C+VD+ GRAG+L  AL+ I +MP++P 
Sbjct: 524 YACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPG 583

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              WGALL AC ++KNTEM  +AS++L +L+ +N G YVLLSNIY+  +N+ +  +VRQ+
Sbjct: 584 PAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQV 643

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT-NP 376
           +K + + K PGC++IE+D + + F +GD +HP+   I  ML +++ +++ AGY A T   
Sbjct: 644 VKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTT 703

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            ++D+E+EEKE  +  HSEK+AIAFGLIS K G  IRI+KNLRVC DCH  TK ISK+  
Sbjct: 704 ALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITE 763

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R I+VRD NRFHHFK G CSC  YW
Sbjct: 764 RVIVVRDANRFHHFKNGICSCGDYW 788



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 121/262 (46%), Gaps = 3/262 (1%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           +G L +   + DG+   ++   +A++    K    +LARK+FD MPERD + WN M++G+
Sbjct: 131 VGVLLHAHSIVDGV-ASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           ++     +++ +F  M    +  +  ++ +VL+A   L     G        +  L   V
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            + T L+ +YSKCG   K    F  + + ++ ++ ++I G   N   E ++ LF  +  +
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G R N  T V ++        ++  R    ++  + GI         L  +Y R   +  
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRL-IQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 245 ALDVINKMPMKPHAGAWGALLN 266
           A  + ++ P K  A +W A+++
Sbjct: 369 ARQLFDESPEKSLA-SWNAMIS 389



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 124/278 (44%), Gaps = 8/278 (2%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            Q +  GIH  D+   T +       G V   R++F+++ + D   +N ++ G++  G  
Sbjct: 35  AQLILHGIHY-DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLP 93

Query: 71  REALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + ++ L+ HL +  +++ +  +    +SA + L     G   H +   + +   + +G+A
Sbjct: 94  KSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSA 153

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           +VD+Y K      A   F  M ER+   W ++I G + N   E S+ +F  M   G+  +
Sbjct: 154 IVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFD 213

Query: 190 EVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
             T  +VL     V  ++E R       +  + G+   +     L+ LY + G+  +   
Sbjct: 214 STTLATVLTA---VAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRI 270

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285
           + +++  +P   ++ A+++       TE      R+L+
Sbjct: 271 LFDQID-QPDLISYNAMISGYTFNHETESAVTLFRELL 307



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 36/254 (14%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +FD I +PD++   AMIS                               GY    ++  A
Sbjct: 271 LFDQIDQPDLISYNAMIS-------------------------------GYTFNHETESA 299

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  +     ++N  ++V ++        L   R       +  + +  ++ TAL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVT 192
           Y +   +  A   F    E+++ +W ++I G   NG  ++++ LF  +M Q  + PN VT
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVT 417

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             S+L  C  +G +  G+     ++ E  +E  +     LVD+Y + G + EA  + + M
Sbjct: 418 VTSILSACAQLGALSIGKWVHGLIKSER-LESNVYVSTALVDMYAKCGSIVEARQLFDLM 476

Query: 253 PMKPHAGAWGALLN 266
             K +   W A++ 
Sbjct: 477 VDK-NVVTWNAMIT 489


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/464 (46%), Positives = 309/464 (66%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G LG  +KVFD + E DVV  T +I A AK GD++ A  +FD++P +D +AW AM
Sbjct: 187 LYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAM 246

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYAQ G+ +EAL  F  MQ   ++ +EV++  V+SAC  LGA+    W     ER+  
Sbjct: 247 VTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGF 306

Query: 121 KMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             +  V +G+AL+DMYSKCG+ ++A   F  MKERNV++++S+I G AM+G    +L+LF
Sbjct: 307 GPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLF 366

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M +  +RPN+VTF+ +L  C   GLVE+GR+ F  M + +G+ P  +HY C+VDL GR
Sbjct: 367 HDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGR 426

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG L+EALD++  MPM+P+ G WGALL ACR++ N ++ ++A+ +L +LE    G Y+LL
Sbjct: 427 AGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILL 486

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE-VDREVHEFFAGDETHPRYNEIEVM 357
           SNIYA +  W+ V  +R++++ KG KK PGCS  E  + E+H+FFAGD THPR +EI   
Sbjct: 487 SNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQA 546

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++  RL+  GY  N     YD+ ++EKE  L  HSEK+A+A+GL+  + G  I+I+KN
Sbjct: 547 LKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKN 606

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +R+C DCH+V    S++  REIIVRD  RFHHF  G CSC  +W
Sbjct: 607 IRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 33/241 (13%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +F ++   +P  W AM+ GYA  G   E+ + +  M+   V     +  ++  AC     
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 105 LDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI- 162
           +D G+  H   I        + +G +++D+Y KCG +  A   F  M ER+V +WT +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 163 ------------------------------GGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
                                          G A NG  +++LE F  M+  G+  +EVT
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
              V+  C  +G V+      D   R  +G    +     L+D+Y + G  DEA  V   
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 252 M 252
           M
Sbjct: 338 M 338


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/464 (44%), Positives = 317/464 (68%), Gaps = 5/464 (1%)

Query: 3   AELGCLGYCQKVFDGIHEPDV----VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           AEL  LG   K+   I E D+    V  +A+++  AKCGD+  AR++FD++ ++D  AW+
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWS 250

Query: 59  AMLAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           A++ GY +  +S EAL LF  +    +++ NEV++++V+SAC  LG L+ GRW H YI R
Sbjct: 251 ALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
            +   +V+L  +L+DM+SKCG+++ A   F  M  +++ +W S++ G A++G G ++L  
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQ 370

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F LM+   ++P+E+TF+ VL  C   GLV+EG++ F  +   YG+    EHYGC+VDL  
Sbjct: 371 FRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLC 430

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG L EA + I  MP++P    WG++L ACR+Y N E+GE A+R L++LE  N G Y+L
Sbjct: 431 RAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYIL 490

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           LSNIYA+ K W+ V  VR++M  KG++K PGCS + +D   H F AGD +HP   EI +M
Sbjct: 491 LSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIM 550

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++  +LKLAGYVA+T+ V+ +I++ +KE+++ +HSEK+A+ +GL+  + G  I I+KN
Sbjct: 551 LRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKN 610

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH + K++SK++ R+I +RDRNRFHHFK+G CSC+ YW
Sbjct: 611 LRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 141/252 (55%), Gaps = 5/252 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  +T +++  A CGD+  AR +F+ M  R+ + W +M++GY +     EAL L+  M+
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 +EV+M +++SAC  L  L  G   H +I    +K+   LG+ALV+MY+KCG++ 
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGC 200
            A   F  + +++VY W+++I G   N    ++L+LF  +   + +RPNEVT ++V+  C
Sbjct: 233 TARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISAC 292

Query: 201 CVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             +G +E GR   D + R + G    L +   L+D++ + G +D A  + + M  K    
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNN--SLIDMFSKCGDIDAAKRIFDSMSYKDLI- 349

Query: 260 AWGALLNACRMY 271
           +W +++N   ++
Sbjct: 350 SWNSMVNGFALH 361



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+P +    A + +    G V  A  +F    E D + WN+ML  +      R AL  + 
Sbjct: 9   HKPSLNKLIAHVLSMGSLG-VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYT 67

Query: 79  LMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M      + +  +  S+L  C  L     G+  H  + +  L   + + T L++MY+ C
Sbjct: 68  EMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAAC 127

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A   F  M  RN   WTS+I G   N    ++L L+  M++ G  P+EVT  +++
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLV 187

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  +  +  G +   S  RE  ++        LV++Y + G L  A  V +K+  K  
Sbjct: 188 SACAELKDLGVGMK-LHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKD- 245

Query: 258 AGAWGALL 265
             AW AL+
Sbjct: 246 VYAWSALI 253


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/443 (47%), Positives = 301/443 (67%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH- 78
           E +VV    M+   A+ G++  AR++FD M +R  ++WN M++GYAQ G  +EA+ +FH 
Sbjct: 196 EFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHR 255

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           +MQ+ DV  N V++VSVL A + LG L+ G+W H+Y E+N++++   LG+ALVDMY+KCG
Sbjct: 256 MMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCG 315

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++ KA+  F  + + NV TW +VIGGLAM+G         S M++ G+ P++VT++++L 
Sbjct: 316 SIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILS 375

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EGR  F+ M    G++P +EHYGC+VDL GRAG L+EA ++I  MPMKP  
Sbjct: 376 ACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDD 435

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W ALL A +M+KN ++G  A+  L+++   + GAYV LSN+YA S NWD V  VR +M
Sbjct: 436 VIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMM 495

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K   ++K PGCS IE+D  +HEF   D++H R  +I  ML EIS +L L G++ +T  V+
Sbjct: 496 KDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVL 555

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++E+ KE  L  HSEK+A+AFGLIS     P+ IVKNLR+C DCH   K+ISK++ R+
Sbjct: 556 LKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERK 615

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I++RDR RFHHF+ G CSC  YW
Sbjct: 616 IVIRDRKRFHHFEHGSCSCMDYW 638



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 142/304 (46%), Gaps = 54/304 (17%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLF 77
           H+  +  +   +SA +   D+  A  +FD++PER+  AWN ++   A+   +  +AL +F
Sbjct: 45  HDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVF 104

Query: 78  -HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYIERNRLKMTVT 125
             ++    V+ N+ +  SVL AC  +  L +G+  H            ++  N L+M V 
Sbjct: 105 CQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVM 164

Query: 126 LGT------------------------------------ALVDMYSKCGNMNKAMDFFWG 149
            G+                                     +VD Y++ GN+  A + F  
Sbjct: 165 CGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDR 224

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEE 208
           M +R+V +W  +I G A NG  ++++E+F  M Q G V PN VT VSVL     +G++E 
Sbjct: 225 MAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLEL 284

Query: 209 GR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G+  H  + + +  I+  L     LVD+Y + G +++A+ V  ++P + +   W A++  
Sbjct: 285 GKWVHLYAEKNKIRIDDVLG--SALVDMYAKCGSIEKAIQVFERLP-QNNVITWNAVIGG 341

Query: 268 CRMY 271
             M+
Sbjct: 342 LAMH 345



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 33/170 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +    +VF                               + +P+ + I WNA+
Sbjct: 310 MYAKCGSIEKAIQVF-------------------------------ERLPQNNVITWNAV 338

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNR 119
           + G A  GK+ +  +    M+   +  ++V+ +++LSAC+H G +D+GR + +  +    
Sbjct: 339 IGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVG 398

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMN 168
           LK  +     +VD+  + G + +A +    M  + +   W +++G   M+
Sbjct: 399 LKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMH 448


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/420 (51%), Positives = 288/420 (68%), Gaps = 1/420 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      +I+A A+ G V  AR +FDEMP R+ ++W+AM+ GY Q G  REAL LF  MQ
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ ++  +V VL+AC  LG L+QG+W H Y++ N +++TV LGTALVDMY+KCG M 
Sbjct: 336 ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            AM+ F  MKE+NV  WT++I GLAM+G G ++LELFS M++ GV+P+++ F+  L  C 
Sbjct: 396 LAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACT 455

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV++GRE FDSM R+YGI+P +EHYGC+VDL  R G L+EA +++ KMPMKP A  W
Sbjct: 456 HTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIW 515

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GAL+  CR +KN E+ E   +  +ELE    GAYVLL NIYA S        +R +M+ K
Sbjct: 516 GALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREK 575

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYD 380
           GV K PGCS +E+   +H+F  GD +HP   EI     EI  R++L  GYV +   V+ D
Sbjct: 576 GVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLD 635

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           IEEEEKE+ L +HSEK+AIAF LI+  + +PIRIVKNLRVC DCH VTK+ISKVF+  ++
Sbjct: 636 IEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/454 (46%), Positives = 299/454 (65%), Gaps = 1/454 (0%)

Query: 9   GYCQKVFDG-IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           G CQ   D    + +VV    MI    + GD+  A+ +FDEMP R  ++WN M++GYAQ 
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQN 248

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G   EA++LF  MQ  ++  N V++VSVL A   +GAL+ G+W H+Y  +N++++   LG
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG 308

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           +ALVDMYSKCG+++KA+  F  + +RN  TW+++IG  AM+G  E ++  F LM +AGV 
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           PN+V ++ +L  C   GLVEEGR  F  M +  G++P +EHYGC+VDL GRAG L+EA +
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
           +I  MP++P    W ALL AC+M+KN +MGE  +  L+EL   + G+YV LSN+YA   N
Sbjct: 429 LIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGN 488

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL 367
           W+ V  VR  MK   ++K PGCS IE+   +HEF   D++H +  EI+ MLGE+S +L+ 
Sbjct: 489 WEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRS 548

Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDV 427
            GY  NT  V  + +E+E+   L  HSEK+A+AFGLIS     P++IVKNLR+C DCH  
Sbjct: 549 NGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHAS 608

Query: 428 TKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            K+IS ++ R+IIVRDR RFH F+ G CSC  YW
Sbjct: 609 LKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 130/307 (42%), Gaps = 56/307 (18%)

Query: 22  DVVCQTAMISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK---SREALHLF 77
           D +    +I  CA    D+D AR +F +MPE +   WN +L   A+        EAL LF
Sbjct: 50  DPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLF 109

Query: 78  HLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYIERNRLKM--- 122
             M     VK N  +  SVL AC     L +G+  H            ++  N ++M   
Sbjct: 110 SAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVM 169

Query: 123 ---------------------------------TVTLGTALVDMYSKCGNMNKAMDFFWG 149
                                             V L   ++D   + G++  A + F  
Sbjct: 170 CAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDE 229

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M  R+V +W  +I G A NG   +++ LF  M+ + + PN VT VSVL     +G +E G
Sbjct: 230 MPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289

Query: 210 R-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           +  H  + + +  I+  L     LVD+Y + G +D+AL V   +P K +A  W A++ A 
Sbjct: 290 KWIHLYAGKNKVEIDDVLG--SALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAF 346

Query: 269 RMYKNTE 275
            M+   E
Sbjct: 347 AMHGRAE 353


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/454 (46%), Positives = 300/454 (66%), Gaps = 1/454 (0%)

Query: 9   GYCQKVFDG-IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           G CQ   D    + +VV    MI    + GD+  A+ +FDEMP+R  ++WN M++GYAQ 
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQN 248

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G   EA++LF  MQ  ++  N V++VSVL A   +GAL+ G+W H+Y  +N++++   LG
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG 308

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           +ALVDMYSKCG++++A+  F  + +RN  TW+++IG  AM+G  E ++  F LM +AGV 
Sbjct: 309 SALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           PN+V ++ +L  C   GLVEEGR  F  M +  G++P +EHYGC+VDL GRAG L+EA +
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
           +I  MP++P    W ALL AC+M+KN +MGE  +  L+EL   + G+YV LSN+YA   N
Sbjct: 429 LIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGN 488

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL 367
           W+ V  VR  MK   ++K PGCS IE+   +HEF   D++H +  EI+ MLGE+S +L+ 
Sbjct: 489 WEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRS 548

Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDV 427
            GY  NT  V  + +E+E+   L  HSEK+A+AFGLIS     P++IVKNLR+C DCH  
Sbjct: 549 NGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHAS 608

Query: 428 TKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            K+IS ++ R+IIVRDR RFH F+ G CSC  YW
Sbjct: 609 LKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 131/307 (42%), Gaps = 56/307 (18%)

Query: 22  DVVCQTAMISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK---SREALHLF 77
           D +    +I  CA    D+D AR +F +MPE +   WN +L   A+        EAL LF
Sbjct: 50  DPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLF 109

Query: 78  HLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYIERNRLKM--- 122
             M     VK N  +  SVL AC     L +G+  H            ++  N ++M   
Sbjct: 110 SAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVM 169

Query: 123 ---------------------------------TVTLGTALVDMYSKCGNMNKAMDFFWG 149
                                             V L   ++D   + G++  A + F  
Sbjct: 170 CAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDE 229

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M +R+V +W  +I G A NG   +++ LF  M+ + + PN VT VSVL     +G +E G
Sbjct: 230 MPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289

Query: 210 R-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           +  H  + + +  I+  L     LVD+Y + G +DEAL V   +P K +A  W A++ A 
Sbjct: 290 KWIHLYAGKNKIEIDDVLG--SALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAF 346

Query: 269 RMYKNTE 275
            M+   E
Sbjct: 347 AMHGRAE 353



 Score = 41.6 bits (96), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG--- 169
           ++I+  +++  +T    +        +++ A   F  M E N + W +++  LA      
Sbjct: 41  IFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEH 100

Query: 170 AGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGRE 211
              ++L LFS M   G V+PN  TF SVL+ C     + EG++
Sbjct: 101 LQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQ 143


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 306/437 (70%), Gaps = 1/437 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
             A++    KC D++ A+++F+ + E+D ++W +ML+G A+ G  +EAL LF  MQ++ +
Sbjct: 251 NNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKI 310

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           +L+E+++V VLSAC   GALDQG++ H+ I++  +   + L TALVDMY+KCG+++ A+ 
Sbjct: 311 ELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQ 370

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M+ RNV+TW ++IGGLAM+G GE ++ LF  M+   + P++VTF+++L  C   GL
Sbjct: 371 VFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGL 430

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V+EG   F +M+ ++ IEP +EHYGC+VDL  RA ++D+AL  I  MP+K ++  W  LL
Sbjct: 431 VDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 490

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR   + ++ E   R+++ELE  + G YV+LSN+YA    WD  + +R+ MK KG++K
Sbjct: 491 GACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEK 550

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYDIEEE 384
            PGCS IE++  +H+F AGD +H +  +I  M+ E++RR+ L  G+V  T  V++DIEEE
Sbjct: 551 TPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEE 610

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE +L  HSEK+AIA GLIS   G PIRIVKNLRVC DCH   K+ SKV+NREI+ RDR
Sbjct: 611 EKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDR 670

Query: 445 NRFHHFKEGKCSCKGYW 461
           +RFHHFKEG CSC  +W
Sbjct: 671 SRFHHFKEGSCSCMDFW 687



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 149/273 (54%), Gaps = 4/273 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG   +C+ + +G    D+    A+I     CG    A  +FDE   RD + WN M+  
Sbjct: 128 KLGRRFHCEVLKNGFGS-DLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA 186

Query: 64  YAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           +   G S +A  L   M ++ +++ +EV+MVS++ AC  LG L++G++ H Y +   L  
Sbjct: 187 HLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDE 246

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
            + +  A++DMY KC ++  A + F  ++E++V +WTS++ GLA +G  +++L LF  M+
Sbjct: 247 NLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQ 306

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
              +  +E+T V VL  C   G +++G+ +   +  ++ I   L     LVD+Y + G +
Sbjct: 307 LNKIELDEITLVGVLSACAQTGALDQGK-YIHLLIDKFEINCDLVLETALVDMYAKCGSI 365

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           D AL V  +M ++ +   W AL+    M+ + E
Sbjct: 366 DLALQVFRRMRVR-NVFTWNALIGGLAMHGHGE 397



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 125/251 (49%), Gaps = 3/251 (1%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           +H P    +     A +  GD++ ARK+F +M   DP   N M+ GYA+     EA+ L+
Sbjct: 40  LHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLY 99

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           + M    V ++  +   VL+AC  LGA+  GR  H  + +N     + +  AL+  Y  C
Sbjct: 100 YFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNC 159

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSV 196
           G+   A D F     R+V TW  +I      G  EK+ +L   M K   +RP+EVT VS+
Sbjct: 160 GSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSL 219

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           +  C  +G +E G+    S  +E G++  L     ++D+Y +   ++ A +V N++  K 
Sbjct: 220 VPACAQLGNLERGK-FLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKD 278

Query: 257 HAGAWGALLNA 267
              +W ++L+ 
Sbjct: 279 -VLSWTSMLSG 288



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 4/151 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+V +TA++   AKCG +DLA ++F  M  R+   WNA++ G A  G   +A+ LF  M+
Sbjct: 348 DLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQME 407

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSKCGN 139
              +  ++V+ +++L AC+H G +D+G  A     +N+ ++   +     +VD+  +   
Sbjct: 408 HDKLMPDDVTFIALLCACSHAGLVDEG-LAMFQAMKNKFQIEPRMEHYGCVVDLLCRARK 466

Query: 140 MNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           ++ A+ F   M  + N   W +++G     G
Sbjct: 467 VDDALAFIENMPIKANSVLWATLLGACRSGG 497


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/464 (46%), Positives = 309/464 (66%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G LG  +KVFD + E DVV  T +I A AK GD++ A  +FD++P +D +AW AM
Sbjct: 187 LYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAM 246

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYAQ G+ +EAL  F  MQ   ++ +EV++  V+SAC  LGA+    W     ER+  
Sbjct: 247 VTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGF 306

Query: 121 KMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             +  V +G+AL+DMYSKCG+ ++A   F  MKERNV++++S+I G AM+G    +L+LF
Sbjct: 307 GPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLF 366

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M +  +RPN+VTF+ +L  C   GLVE+GR+ F  M + +G+ P  +HY C+VDL GR
Sbjct: 367 HDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGR 426

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG L+EALD++  MPM+P+ G WGALL ACR++ N ++ ++A+ +L +LE    G Y+LL
Sbjct: 427 AGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILL 486

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE-VDREVHEFFAGDETHPRYNEIEVM 357
           SNIYA +  W+ V  +R++++ KG KK PGCS  E  + E+H+FFAGD THPR +EI   
Sbjct: 487 SNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQA 546

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++  RL+  GY  N     YD+ ++EKE  L  HSEK+A+A+GL+  + G  I+I+KN
Sbjct: 547 LKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKN 606

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +R+C DCH+V    S++  REIIVRD  RFHHF  G CSC  +W
Sbjct: 607 IRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 33/241 (13%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +F ++   +P  W AM+ GYA  G   E+ + +  M+   V     +  ++  AC     
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 105 LDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI- 162
           +D G+  H   I        + +G +++D+Y KCG +  A   F  M ER+V +WT +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 163 ------------------------------GGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
                                          G A NG  +++LE F  M+  G+  +EVT
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
              V+  C  +G V+      D   R  +G    +     L+D+Y + G  DEA  V   
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 252 M 252
           M
Sbjct: 338 M 338


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/420 (51%), Positives = 288/420 (68%), Gaps = 1/420 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      +I+A A+ G V  AR +FDEMP R+ ++W+AM+ GY Q G  REAL LF  MQ
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ ++  +V VL+AC  LG L+QG+W H Y++ N +++TV LGTALVDMY+KCG M 
Sbjct: 336 ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            AM+ F  MKE+NV  WT++I GLAM+G G ++LELFS M++ GV+P+++ F+  L  C 
Sbjct: 396 LAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACT 455

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV++GRE FDSM R+YGI+P +EHYGC+VDL  R G L+EA +++ KMPMKP A  W
Sbjct: 456 HTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIW 515

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GAL+  CR +KN E+ E   +  +ELE    GAYVLL NIYA S        +R +M+ K
Sbjct: 516 GALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREK 575

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYD 380
           GV K PGCS +E+   +H+F  GD +HP   EI     EI  R++L  GYV +   V+ D
Sbjct: 576 GVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLD 635

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           IEEEEKE+ L +HSEK+AIAF LI+  + +PIRIVKNLRVC DCH VTK+ISKVF+  ++
Sbjct: 636 IEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/465 (45%), Positives = 313/465 (67%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGI-HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           MYA+ G +   ++VF  +         ++M+   A+CG++++ARK+F+ M ERD I+W A
Sbjct: 258 MYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTA 317

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERN 118
           M++GY+Q G+  EAL LF  M+   +K +EV++V+VLSAC  LGA D G R  H YIE  
Sbjct: 318 MISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENG 377

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
                  L  A++DMY+KCG+++ A++ F   G   +  + + S+I GLA +G GE ++ 
Sbjct: 378 VFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAIT 437

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F  +   G++P+EVTFV VL  C   GL+EEG++ F+SM   YGI+P +EHYGC+VDL 
Sbjct: 438 VFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLL 497

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GR G L+EA D++ KMP + ++  W ALL+ACR + N ++GE+A +KL+E+E ++   YV
Sbjct: 498 GRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYV 557

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSNI A++  W+    VR++M+  G++K PG S IE+   +H F A D++HP+  EIE+
Sbjct: 558 LLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIEL 617

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
           ML +++ RLK AGYV NT  VM+DI+EEEKE  +  HSEK+A+AFGL+       IRIVK
Sbjct: 618 MLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVK 677

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH   K++S+++ REI VRD  RFHHF+ G CSC  +W
Sbjct: 678 NLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 157/321 (48%), Gaps = 11/321 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGD---VDLARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q + +G+H   +   + +IS  +  G    +D +R +F ++   +   WN M+ GY++
Sbjct: 29  HAQTIVNGLHH-QIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSR 87

Query: 67  CGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
               REA+ L+  M    +   N  +   +L++C  L +L+ G   H +I ++  +  + 
Sbjct: 88  SDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLF 147

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           +  AL+ +YS  GN+N A   F     R++ ++ ++I G A     E +L LF  M+ +G
Sbjct: 148 VRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSG 207

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           + P+E TFV++   C V+     G++ H    +    I+  +     +VD+Y + G ++ 
Sbjct: 208 ILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINI 267

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE-LETKNHGAYVLLSNIYA 303
           A  V + M     A AW +++  C   +  E+    +RKL   +  ++  ++  + + Y+
Sbjct: 268 AERVFSTMGTSKSAAAWSSMV--CGYARCGEIN--VARKLFNHMHERDVISWTAMISGYS 323

Query: 304 ESKNWDRVINVRQIMKAKGVK 324
           ++      + + + M+A G+K
Sbjct: 324 QAGQCSEALELFKEMEALGIK 344



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 65/286 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y+  G L   + +FD     D+V                               ++N M
Sbjct: 155 LYSVFGNLNLARTLFDESLVRDLV-------------------------------SYNTM 183

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-- 118
           + GYA+  +   AL LF  MQ   +  +E + V++ S C+ L   + G+  H  + +N  
Sbjct: 184 IKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLR 243

Query: 119 RLKMTVTLGTALVDMYSK--------------------------------CGNMNKAMDF 146
            +   + L +A+VDMY+K                                CG +N A   
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M ER+V +WT++I G +  G   ++LELF  M+  G++P+EVT V+VL  C  +G  
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF 363

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           + G+  +                  ++D+Y + G +D AL++  ++
Sbjct: 364 DLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/464 (46%), Positives = 306/464 (65%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY  L  +   +KVFD     D+     M+S  A+ G +D AR++FDEMPE+D ++W  M
Sbjct: 146 MYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTM 205

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G  Q G   EAL +FH M    +  NE ++ S L+AC +L ALDQGRW HVYI++N +
Sbjct: 206 ISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNI 265

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELF 178
           +M   L   L+DMY+KCG +  A   F      +R V+ W ++IGG A++G  ++++E+F
Sbjct: 266 QMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVF 325

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             MK   V PN+VTFV++L  C     VEEGR +F+SM   Y ++P LEHYGCLVDL GR
Sbjct: 326 EQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGR 385

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL EA ++I+ M + P    WGALL+AC+++K+ EMGE   + + EL+  + G +VLL
Sbjct: 386 AGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLL 445

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           +NIY+ + NW+    +R+ +   G KK PGCS IE++   H+F  GD +HP+  ++ + L
Sbjct: 446 ANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFL 505

Query: 359 GEISRRLKLAGYVANTNPVMYDIEE-EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            E+  +LK+AGY+  +  V+ DI++ E++E  L KHSEK+AIAFGL++     PIRIVKN
Sbjct: 506 DEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKN 565

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   K ISKV++REIIVRDR R+HHFK+G CSC  YW
Sbjct: 566 LRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 118/301 (39%), Gaps = 44/301 (14%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLA--GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           +  A  +FD  P+ D   +N ++    ++    +        L++   +  N+ S     
Sbjct: 50  ISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAF 109

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
             C     + +G    V+  +  L+  + +  AL+ MY     +  A   F     R++Y
Sbjct: 110 KGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMY 169

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W  ++ G A  G  +++ +LF  M +  V    V++ +++ GC  VG   E  + F +M
Sbjct: 170 SWNIMLSGYARLGKMDEARQLFDEMPEKDV----VSWTTMISGCLQVGYFMEALDIFHNM 225

Query: 217 RREYGIEP----------------------WLEHY-------------GCLVDLYGRAGR 241
             + G+ P                      W+  Y               L+D+Y + G 
Sbjct: 226 LAK-GMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGE 284

Query: 242 LDEALDVINKMP-MKPHAGAWGALLNACRMY-KNTEMGELASRKLVELETKNHGAYVLLS 299
           L+ A  + N  P +K     W A++    ++ K+ E  E+  +  +E  + N   +V L 
Sbjct: 285 LEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALL 344

Query: 300 N 300
           N
Sbjct: 345 N 345


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/460 (47%), Positives = 307/460 (66%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y     +   +KVFDG+   D+V    MI   A  G+V LAR++FD   +RD  +W++M+
Sbjct: 33  YVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMI 92

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + YA+  +S+EAL L+  M    +  + +++VSV+SAC+ LGAL  G   H ++E NR++
Sbjct: 93  SAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIE 152

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + + LGTAL+DMY+KCG++  A   F  M E++V TW+S+I GLA +G G +SL LFS M
Sbjct: 153 LDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKM 212

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
              G++PN VTFV VL  C  VGLV EG+++F SM   +GIEP +EHYGC+VDL GR+G 
Sbjct: 213 ISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGH 272

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           ++EA  +I  M  +P    W ALL ACR++KN E+ E A  KL  L+    G YVLLSNI
Sbjct: 273 VEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNI 332

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA++ +W+ V  +R+ ++   ++++PG S IE D ++HEF +GD  HPR  EI  +L E+
Sbjct: 333 YAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEM 392

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             RLK AGY   T  V+ DI+E+ KE +L +HSEK+AIAF L++      IRI KNLR C
Sbjct: 393 MDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRAC 452

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K+IS V++R++IVRDRNRFHHF EG+CSCK YW
Sbjct: 453 EDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/440 (47%), Positives = 298/440 (67%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   TA++     C  +  A ++FDEMPER+ + WNA++ GY    K  +A+  F  M 
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + +E ++V VLSAC+HLGA +QG+W H +I  NRL++ V +GTAL+DMY+KCG + 
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +    F  ++E+NVYTW  +I G AMNG G+ +L+ FS M     +P+EVTF+ VL  CC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EGR  F SM++++G++P +EHYGC+VDL GRAG L+EAL++I  M ++P    W
Sbjct: 303 HQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIW 362

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL ACR++ NT++GE   ++L+ELE  N   YVLLSNIY+  + W  V  +R +M  +
Sbjct: 363 RALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLR 422

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K+PGCS IE++  V+EF A ++  P +  I   L  + ++LK  GYV  T+  +YDI
Sbjct: 423 GIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDI 482

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           E+EEKE ++  HSEK+A+AFGL++      +RIVKNLR+C DCH+  K++S V+ R I+V
Sbjct: 483 EKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVV 542

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDRNRFHHF EG CSC+ YW
Sbjct: 543 RDRNRFHHFYEGFCSCRDYW 562



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 13/235 (5%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+  Y    K   +L++F LM    +  +  +  +VL A   L     G+  H  + +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                 V   TALV +Y  C +++ A   F  M ERN  TW ++I G   N    K+++ 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-----EHFDSMRREYGIEPWLEHYGCL 232
           F  M   G +P+E T V VL  C  +G   +G+      + + +R    +         L
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGT------AL 231

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA-SRKLVE 286
           +D+Y + G + E   V  ++  K +   W  L++   M    +    A SR L+E
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLME 285


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/443 (46%), Positives = 308/443 (69%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + ++    A++    KC D++ A+++F+ + E+D ++W +ML+G A+ G  +E+L LF  
Sbjct: 43  DENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRK 102

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ+H ++ +E+++V VLSAC   GALDQG++ H+ I++  +   + L TALVDMY+KCG+
Sbjct: 103 MQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGS 162

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F  M+ RNV+TW ++IGGLAM+G GE ++ LF  M+   + P++VTF+++L  
Sbjct: 163 IDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCA 222

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG   F +M+ ++ IEP +EHYGC+VDL  RA ++D+AL  I  MP+K ++ 
Sbjct: 223 CSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSV 282

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL ACR   + ++ E   R+++ELE  + G YV+LSN+YA    WD  + +R+ MK
Sbjct: 283 LWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMK 342

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVM 378
            KG++K PGCS IE++  +H+F AGD +H +  +I  M+ E++RR+ L  G+V  T  V+
Sbjct: 343 NKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVL 402

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +DIEEEEKE +L  HSEK+AIA GLIS   G PIRIVKNLRVC DCH   K+ SKV+NRE
Sbjct: 403 FDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNRE 462

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+ RDR+RFHHFKEG CSC  +W
Sbjct: 463 IVARDRSRFHHFKEGSCSCMDFW 485



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 116/197 (58%), Gaps = 2/197 (1%)

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           + ++ +++ +EV+MVS++ AC  LG L++G+  H Y +   L   +++  A++DMY KC 
Sbjct: 1   MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCD 60

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A + F  ++E++V +WTS++ GLA +G  ++SL LF  M+   + P+E+T V VL 
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   G +++G+ +   +  ++ I   L     LVD+Y + G +D AL V  +M ++ + 
Sbjct: 121 ACAQTGALDQGK-YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NV 178

Query: 259 GAWGALLNACRMYKNTE 275
             W A++    M+ + E
Sbjct: 179 FTWNAMIGGLAMHGHGE 195


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/440 (47%), Positives = 298/440 (67%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   TA++     C  +  A ++FDEMPER+ + WNA++ GY    K  +A+  F  M 
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + +E ++V VLSAC+HLGA +QG+W H +I  NRL++ V +GTAL+DMY+KCG + 
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +    F  ++E+NVYTW  +I G AMNG G+ +L+ FS M     +P+EVTF+ VL  CC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EGR  F SM++++G++P +EHYGC+VDL GRAG L+EAL++I  M ++P    W
Sbjct: 303 HQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIW 362

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL ACR++ NT++GE   ++L+ELE  N   YVLLSNIY+  + W  V  +R +M  +
Sbjct: 363 RALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLR 422

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K+PGCS IE++  V+EF A ++  P +  I   L  + ++LK  GYV  T+  +YDI
Sbjct: 423 GIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDI 482

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           E+EEKE ++  HSEK+A+AFGL++      +RIVKNLR+C DCH+  K++S V+ R I+V
Sbjct: 483 EKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVV 542

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDRNRFHHF EG CSC+ YW
Sbjct: 543 RDRNRFHHFYEGFCSCRDYW 562



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 13/235 (5%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+  Y    K   +L++F LM    +  +  +  +VL A   L     G+  H  + +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                 V   TALV +Y  C +++ A   F  M ERN  TW ++I G   N    K+++ 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-----EHFDSMRREYGIEPWLEHYGCL 232
           F  M   G +P+E T V VL  C  +G   +G+      + + +R    +         L
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGT------AL 231

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA-SRKLVE 286
           +D+Y + G + E   V  ++  K +   W  L++   M    +    A SR L+E
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLME 285


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 306/468 (65%), Gaps = 7/468 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISA---CAKCGD-VDLARK---MFDEMPERD 53
           +Y + G +    KVFD I E +V   TA+IS      KC + +D+ R+   +FD M E+D
Sbjct: 152 LYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKD 211

Query: 54  PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
            ++W++M+ GYA  G  +EAL LF  M     + +  +MV VL AC  LGAL+ G WA  
Sbjct: 212 IVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASN 271

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
            ++RN       LGTAL+DMY+KCG M+ A + F GM+++++  W + I GLAM+G  + 
Sbjct: 272 LMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKA 331

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           +  LF  M+++G+ P+  TFV +L  C   GLV+EGR++F+SM R + + P +EHYGC+V
Sbjct: 332 AFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMV 391

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           DL GRAG LDEA  ++  MPM+ +A  WGALL  CR++++T++ E   ++L+ LE  N G
Sbjct: 392 DLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSG 451

Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
            YVLLSNIY+ S  W+    +R IM  +G+KK+PG S IEVD  VHEF  GD +HP   +
Sbjct: 452 NYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEK 511

Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
           I   LGE+ + LK +GYV  T+ V++DIEEEEKE  +  HSEK+AIAFGLIS      IR
Sbjct: 512 IYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIR 571

Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +VKNLRVC DCH+  K IS+   REIIVRD NRFH F +G CSCK YW
Sbjct: 572 VVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 116/273 (42%), Gaps = 42/273 (15%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G+ + + ++F +  E +   +N M+ G       +E++ ++H M+   +  +  +   +L
Sbjct: 56  GNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLL 115

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF--------- 147
            AC  L     G   H  + +   +    + T+LV +Y KCG ++ A   F         
Sbjct: 116 KACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVA 175

Query: 148 -W----------------------------GMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            W                            GM E+++ +W+S+I G A NG  +++L+LF
Sbjct: 176 AWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLF 235

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYG 237
             M   G RP+    V VL  C  +G +E G    + M R E+   P L     L+D+Y 
Sbjct: 236 FKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMYA 293

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           + GR+D A +V   M  K     W A ++   M
Sbjct: 294 KCGRMDSAWEVFRGMRKKDIV-VWNAAISGLAM 325


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/460 (46%), Positives = 309/460 (67%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   +KVFDG+   D+V    MI   A  GDV +AR++FD   +RD  +W++M+
Sbjct: 126 YVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMI 185

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + YA+   S+EAL L+  M++  V  + +SMVSVLSAC+ +GAL  G   H ++E NR++
Sbjct: 186 SAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVE 245

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + + LGTALVDMY+KCG++  ++  F  M  ++V TW+S+I GLA +G G  +L LFS M
Sbjct: 246 VDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEM 305

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
              G++PNE+TF+ VL  C  VGLV +G+++F SM   +G+ P +EHYGC+VDL GRAG 
Sbjct: 306 ISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGH 365

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           ++EA+++I  M  KP    W  LL ACR++KN E+ E A  KL  L+    G YVLLSNI
Sbjct: 366 VEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNI 425

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA++ +W+ V  +R+ ++ + ++++PG S IE +  VHEF +GD +HPR  EI  ML E+
Sbjct: 426 YAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEM 485

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             RL+ AGY   T+ V+ DI+E+ K+  L +HSEK+AIAFGL+       +RI KNLR C
Sbjct: 486 MDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRAC 545

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K+IS  ++R++IVRDRNRFHHF EG+CSCK YW
Sbjct: 546 EDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/461 (46%), Positives = 310/461 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y   G +G    +F+ + + D V    +I+  AK GD+D A   F  MP ++  +W +M
Sbjct: 54  LYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSM 113

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G+ QCGK  EA+ LF  ++   V+ NEV++VSVL+AC  LG LD GR  H Y  ++  
Sbjct: 114 ISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGF 173

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K  V +   L+DMY KCG +  A   F+ M+ER V +W+++I GLAM+G  E++L LFS 
Sbjct: 174 KRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSE 233

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + GV+PN VTF+ +L  C  +GL++EGR  F SM  +YG+ P +EHYGC+VDL+ RAG
Sbjct: 234 MIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAG 293

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA + I  MP+KP+   WGALL  C+++KN ++ E A + L EL+  N G YV++SN
Sbjct: 294 LLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISN 353

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAE++ W+    VR++MK +GVKK  G S I V+  VHEF AGD+THP+  +I  +  +
Sbjct: 354 IYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDK 413

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  ++K  GY   T+ V+ D+EE+EKE  L +HSEK+A+ FGL++  EG PIRI+KNLRV
Sbjct: 414 LLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRV 473

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+IS + +REIIVRDRNRFH F++G+CSC+ +W
Sbjct: 474 CEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 41/249 (16%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++ DV  +  +   VL AC  L  +  G+  H   ++      + L   ++++Y  CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 140 MNKAM-------------------------------DFFWGMKERNVYTWTSVIGGLAMN 168
           M  AM                                FF  M  +NV +WTS+I G    
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G   ++++LF  ++   VRPNEVT VSVL  C  +G ++ GR     +  EY  +   + 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGR-----IVHEYSTKSGFKR 175

Query: 229 Y----GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
                  L+D+Y + G L+ A  V  +M  +    +W A++    M+   E       ++
Sbjct: 176 NVHVCNTLIDMYVKCGCLENARRVFYEMEERTVV-SWSAMIAGLAMHGQAEEALCLFSEM 234

Query: 285 VELETKNHG 293
           ++L  K +G
Sbjct: 235 IKLGVKPNG 243


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/441 (49%), Positives = 291/441 (65%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD    ++++ AC    D+   R +   + +    +W +M+AGY QCGK++EA+HLF  M
Sbjct: 159 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKM 218

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   VK NEV++V+VL+AC  LGALD G   H Y  R+  K  V +   L+DMY KCG +
Sbjct: 219 EEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCL 278

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A   F  M+ER V +W+++IGGLAM+G  E++L LFS M Q G+ PN VTF+ +L  C
Sbjct: 279 EEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHAC 338

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             +GL+ EGR  F SM R+YGI P +EHYGC+VDL  RAG L EA + I  MPMKP+   
Sbjct: 339 SHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVV 398

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL ACR++KN EM E A + L+EL+  N G YV+LSNIYAE+  W+    VR+ MK 
Sbjct: 399 WGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKD 458

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + VKK PG S I VD  VHEF AG+E+HP   +I     E+   ++L GYV NT+ V+ D
Sbjct: 459 RQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLD 518

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           IEE EK   + +HSEK+A+ FGL++     PIRI+KNLR+C DCH   K+IS + NREI+
Sbjct: 519 IEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIV 578

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDRNRFH F +  CSC+ YW
Sbjct: 579 VRDRNRFHCFNDNSCSCRDYW 599



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 41/246 (16%)

Query: 33  CAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
           CA       A+++F  + ++ P    WN+ L   A+     +A+ LF+ ++ +DV  +  
Sbjct: 103 CAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTF 162

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +  SVL AC +L  L  GR  H  +E    K+     T+++  Y +CG   +A       
Sbjct: 163 TCSSVLRACLNLLDLSNGRILHGVVE----KVGFRSWTSMIAGYVQCGKAKEA------- 211

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG- 209
                                   + LF+ M++AGV+ NEVT V+VL  C  +G ++ G 
Sbjct: 212 ------------------------IHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGM 247

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
           R H  S R  +G +  +     L+D+Y + G L+EA  V  +M  +    +W A++    
Sbjct: 248 RIHEYSNR--HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERT-VVSWSAMIGGLA 304

Query: 270 MYKNTE 275
           M+   E
Sbjct: 305 MHGRAE 310


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/435 (47%), Positives = 292/435 (67%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA+ +  ++  +++ AR +FDE  E+   +WNAM++GYAQ G + +A+ LF  MQ  +V+
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVR 406

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N V++ S+LSAC  LGAL  G+W H  I R   +  + + TAL+DMY+KCG++ +A   
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRL 466

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M E+N  TW ++I G  ++G G ++L LF+ M  + V P  VTF+SVL  C   GLV
Sbjct: 467 FSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLV 526

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EG E F SM  ++G EP  EHY C+VDL GRAG LD+ALD I KMP++P    WGALL 
Sbjct: 527 REGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLG 586

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           AC ++K+  +  LAS KL EL+ +N G YVLLSNIY+  +N+    +VR ++K + + K 
Sbjct: 587 ACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKT 646

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGC++IEV   +H F +GD++HP+   I  ML +++ +++ AG+   T   ++D+EEEEK
Sbjct: 647 PGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEK 706

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  +  HSEK+AIAFGLI+ + G  IRI+KNLRVC DCH+ TK ISK+  R I+VRD NR
Sbjct: 707 ELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANR 766

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  YW
Sbjct: 767 FHHFKDGICSCGDYW 781



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 126/233 (54%), Gaps = 2/233 (0%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           +KCG+++ AR +F ++ + D +++NAM++GY    ++  ++ LF  + +   K+N  S+V
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            ++      G L   R  H +  ++ +    ++ TAL  +YS+   +  A   F    E+
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           ++ +W ++I G A NG  EK++ LF  M++  VRPN VT  S+L  C  +G +  G+   
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH 432

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           D + RE   E  +     L+D+Y + G + EA  + + MP K +A  W A+++
Sbjct: 433 DLINRE-SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTWNAMIS 483



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 5/191 (2%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q + +G+H  D+V  T +    +    +D A  +F  +P  D   +N ++  ++    
Sbjct: 30  HAQIILNGLHN-DLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNS 88

Query: 70  SREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
              A+ L+ HL +   ++ +  +   V+S  + LG         +          + +G+
Sbjct: 89  PSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAG---FGSDLFVGS 145

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           A+V  Y K   +  A   F GM ER+   W +++ GL  N   ++++ +F  M + G+  
Sbjct: 146 AIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF 205

Query: 189 NEVTFVSVLRG 199
           +  T  +VL G
Sbjct: 206 DSTTVAAVLPG 216


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/467 (47%), Positives = 307/467 (65%), Gaps = 6/467 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY     L   ++VF  I  PD V  T++IS  +K G +D A  +F  MP+++  +WNAM
Sbjct: 166 MYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAM 225

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +A Y Q  +  EA  LF  M+  +   L++    ++LSACT LGALDQG+W H YI+RN 
Sbjct: 226 MAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNG 285

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLEL 177
           +++   L TA+VDMY KCG + KA+  F  +    R + +W  +IGGLAM+G GE +++L
Sbjct: 286 IELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQL 345

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M++  V P+++TF+++L  C   GLVEEGR +F  M R YGIEP +EH+GC+VDL G
Sbjct: 346 FKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLG 405

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG + EA  +I++MP+ P     G LL AC+ ++N E+GE   R+++ELE  N G YVL
Sbjct: 406 RAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVL 465

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+N+YA +  W+    VR++M  +GVKK PG S+IE+   VHEF AG+  HP+  E+   
Sbjct: 466 LANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAK 525

Query: 358 LGEISRRLKLAGYVANTNPVM--YDIEEEEK-EDTLCKHSEKVAIAFGLISLKEGVPIRI 414
           + E+   LK  GYVA+TN V+  +D +EEE  E+ L  HSEK+AIAFGL   K G  +RI
Sbjct: 526 VYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRI 585

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +KNLR+C DCH   K+IS VF+REIIVRDR RFH FK G+CSC+ YW
Sbjct: 586 LKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/440 (47%), Positives = 295/440 (67%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T+++    KCG+++ A  +F  MPE+D ++W+ M+ GYA  G  ++AL LF  MQ
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++K +  +MV VLSAC  LGALD G WA   ++RN       LGTAL+DMYSKCG++ 
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVT 368

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F  MK+++   W +++ GL+MNG  +    LFSL+++ G+RP+E TF+ +L GC 
Sbjct: 369 QAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G V EGR+ F++M+R + + P +EHYGC+VDL GRAG L+EA  +IN MPMKP+A  W
Sbjct: 429 HGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVW 488

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL  C+++K+T + E   +KL+ELE  N G YV LSNIY+ +  W+    +R  MK +
Sbjct: 489 GALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            ++K+  CS IE+D  VHEF  GD++H    +I   L E+ R LK  G+V  T  V++DI
Sbjct: 549 QIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDI 608

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  L  HSEK+A+AFGLI+      IR+VKNLRVC DCHD  K+ISK+  REII+
Sbjct: 609 EEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIII 668

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F +G CSC+ YW
Sbjct: 669 RDTNRFHTFIDGSCSCRDYW 688



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 139/253 (54%), Gaps = 4/253 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV  +T+++S   KC + D A K+FD++P+++ ++W A++ GY   G  REA+  F 
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +    +K +  S+V VL+AC  LG    G W   YI  + +   V + T+L+DMY KCG
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG 264

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+ +A   F  M E+++ +W+++I G A NG  +++L+LF  M+   ++P+  T V VL 
Sbjct: 265 NLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLS 324

Query: 199 GCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +G ++ G      M R E+   P L     L+D+Y + G + +A ++   M  K  
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMKKKDR 382

Query: 258 AGAWGALLNACRM 270
              W A++    M
Sbjct: 383 V-VWNAMMVGLSM 394



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 6/264 (2%)

Query: 29  MISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           +I  CA   G  + ++ +F ++ E +   WN M+ G        +A+HL+  M+      
Sbjct: 53  LILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLP 112

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  ++  VL AC     +  G   H  + +      V + T+L+ +Y KC N + A+  F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + ++NV +WT++I G   +G   +++  F  + + G++P+  + V VL  C  +G   
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            G E  D    + G+   +     L+D+Y + G L+ A  + + MP K    +W  ++  
Sbjct: 233 SG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIV-SWSTMIQG 290

Query: 268 CRMYKNTEMGELASRKLVELETKN 291
              Y    + + A     +++++N
Sbjct: 291 ---YAFNGLPQQALDLFFQMQSEN 311


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/440 (47%), Positives = 294/440 (66%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T+++    KCG+++ A  +F  MPE+D ++W+ M+ GYA  G  ++AL LF  MQ
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++K +  +MV VLSAC  LGALD G WA   ++RN       LGTAL+DMYSKCG++ 
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVT 368

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F  MK ++   W +++ GL+MNG  +    LFSL+++ G+RP+E TF+ +L GC 
Sbjct: 369 QAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G V EGR+ F++M+R + + P +EHYGC+VDL GRAG L+EA  +IN MPMKP+A  W
Sbjct: 429 HGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVW 488

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL  C+++K+T + E   +KL+ELE  N G YV LSNIY+ +  W+    +R  MK +
Sbjct: 489 GALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            ++K+  CS IE+D  VHEF  GD++H    +I   L E+ R LK  G+V  T  V++DI
Sbjct: 549 QIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDI 608

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  L  HSEK+A+AFGLI+      IR+VKNLRVC DCHD  K+ISK+  REII+
Sbjct: 609 EEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIII 668

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F +G CSC+ YW
Sbjct: 669 RDTNRFHTFIDGSCSCRDYW 688



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 139/253 (54%), Gaps = 4/253 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV  +T+++S   KC + D A K+FD++P+++ ++W A++ GY   G  REA+  F 
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +    +K +  S+V VL+AC  LG    G W   YI  + +   V + T+L+DMY KCG
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG 264

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+ +A   F  M E+++ +W+++I G A NG  +++L+LF  M+   ++P+  T V VL 
Sbjct: 265 NLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLS 324

Query: 199 GCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +G ++ G      M R E+   P L     L+D+Y + G + +A ++   M  K  
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMKRKDR 382

Query: 258 AGAWGALLNACRM 270
              W A++    M
Sbjct: 383 V-VWNAMMVGLSM 394



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 6/264 (2%)

Query: 29  MISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           +I  CA   G  + ++ +F ++ E +   WN M+ G        +A+HL+  M+      
Sbjct: 53  LILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLP 112

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  ++  VL AC     +  G   H  + +      V + T+L+ +Y KC N + A+  F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + ++NV +WT++I G   +G   +++  F  + + G++P+  + V VL  C  +G   
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            G E  D    + G+   +     L+D+Y + G L+ A  + + MP K    +W  ++  
Sbjct: 233 SG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIV-SWSTMIQG 290

Query: 268 CRMYKNTEMGELASRKLVELETKN 291
              Y    + + A     +++++N
Sbjct: 291 ---YAFNGLPQQALDLFFQMQSEN 311


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/457 (45%), Positives = 310/457 (67%), Gaps = 1/457 (0%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           +G L +   + +G+H  + VC T ++   AKCG +D A+++FD MP++D +    M+AGY
Sbjct: 119 MGRLIHSTVLKNGLHLDNFVCST-LVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGY 177

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           A+CGK  E+  LF  M+      ++V+MV++++AC  LGA+++ R  H Y+   R  + V
Sbjct: 178 AECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDV 237

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            LGTA++DMY+KCG+++ + + F  M+++NV +W+++IG    +G G ++LELF +M  +
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNS 297

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G+ PN +TF+S+L  C   GLV++G + F  M   YG+ P ++HY C+VDL GRAGRLD+
Sbjct: 298 GIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQ 357

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           AL +I  M ++   G W A L ACR+++  ++ E A++ L+ L+T+N G Y+LLSNIYA 
Sbjct: 358 ALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYAN 417

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
           +  W  V  +R +M  + +KK+PG + IEVD  ++ F AGD +H R NEI  ML  +S++
Sbjct: 418 AGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQK 477

Query: 365 LKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDC 424
           L+ AGYV +TN V++D++EE K   L  HSEK+AIAFGLI+  +G PIRI KNLRVC DC
Sbjct: 478 LESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDC 537

Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           H   K++S +  R+IIVRD NRFHHFKEG CSC  YW
Sbjct: 538 HSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 129/247 (52%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++    ++  CAK  D+  A  +F++M ERDP++W+ M+ G+ + G        F  + 
Sbjct: 34  DLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELI 93

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K +  S+  V+ AC     L  GR  H  + +N L +   + + LVDMY+KCG ++
Sbjct: 94  RAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMID 153

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M ++++ T T +I G A  G   +S  LF  M++ G  P++V  V+++  C 
Sbjct: 154 NAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACA 213

Query: 202 VVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +G + + R   D +  R Y ++  +E    ++D+Y + G +D + ++ ++M  K +  +
Sbjct: 214 KLGAMNKARLVHDYVCARRYSLD--VELGTAMIDMYAKCGSIDSSREIFDRMEQK-NVIS 270

Query: 261 WGALLNA 267
           W A++ A
Sbjct: 271 WSAMIGA 277



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
            +S L  C ++  + Q    H  +    +   + +   L+ M +K  ++  A   F  M+
Sbjct: 6   FISTLFKCRNIFQIKQ---VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKME 62

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC-CVVGLVEEGR 210
           ER+  +W+ +IGG   NG  E+  + F  + +AG +P+  +   V++ C   +GL+    
Sbjct: 63  ERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRL 122

Query: 211 EHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMK 255
            H   ++   G+   L+++ C  LVD+Y + G +D A  + ++MP K
Sbjct: 123 IHSTVLKN--GLH--LDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK 165


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/443 (47%), Positives = 302/443 (68%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +VV    MI    + GD+  +R++FD MP +  ++WN M++G AQ G  +EA+ +FH 
Sbjct: 187 EGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHD 246

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ+ DV  N V++VSVL A + LGA++ G+W H++ E+N +++   LG+AL+DMYSKCG+
Sbjct: 247 MQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGS 306

Query: 140 MNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++KA+  F G++ ++N  TW+++IGGLAM+G    +L+ F  M+QAGV P++V ++ VL 
Sbjct: 307 IDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLS 366

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVEEGR  +  M    G+ P +EHYGC+VDL GRAG L+EA  +I  MP+KP  
Sbjct: 367 ACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDD 426

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
               ALL AC+M+ N EMGE  ++ L+     + G+YV LSN++A   NW+ V+ VR  M
Sbjct: 427 VILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKM 486

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K   ++K PGCS IE+D  +HEF   D++HPR   I  ML E+S RL+  GY  NT  V+
Sbjct: 487 KELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVL 546

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            +++E+EK+  L  HSEK+AIAFGLIS +   P++IVKNLRVC DCH   K++SK++NR+
Sbjct: 547 LNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRK 606

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRDR RFHHF+ G CSC  YW
Sbjct: 607 IIVRDRKRFHHFENGSCSCMDYW 629



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 43/295 (14%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG-------KS 70
           IH P    +       +   ++  ARK F ++   +  +WN ++   A           S
Sbjct: 44  IHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNS 103

Query: 71  REALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW------------------- 110
            EAL  F H++    V+ N+ +   VL AC  L  +++G+                    
Sbjct: 104 LEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSN 163

Query: 111 -------------AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
                        AHV   + RL+  V L   ++D Y + G++  + + F  M  ++V +
Sbjct: 164 LVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVS 223

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSM 216
           W  +I G A NG  ++++E+F  M+   V PN VT VSVL     +G +E G+  H  + 
Sbjct: 224 WNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAE 283

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           + E  I+  L     L+D+Y + G +D+A+ V   +  K +   W A++    M+
Sbjct: 284 KNEIEIDDVLG--SALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMH 336


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 295/434 (67%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            +I   A CG +D A  MFDEMPE D  +W+ M++GYAQ G++ EAL LF  MQ  +V  
Sbjct: 147 GLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSS 206

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  ++ SV+  C  LGALD G+W H Y+++  +K+ V LGTALV MYSKCG+++ A+  F
Sbjct: 207 DAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 266

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
            GM ER+V  W+++I G A++G GEK+L+LF  MK++   PN VTF SVL  C   GLVE
Sbjct: 267 QGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVE 326

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +G + F++M  EY I P ++HYGC+VDL+ RAG +  A   I  MP++P+   W  LL A
Sbjct: 327 KGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGA 386

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           C+ +   ++GE  SRK+++L+  +   YVL+SN+YA    W  V  VR +MK K  KK  
Sbjct: 387 CKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQH 446

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           G S IE++  VH+F  GDE+HP   +I  ML +++R+LK  G+V +T  V++DI+EEEKE
Sbjct: 447 GWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKE 506

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L  HSE++AIA+GL+    G PIRIVKNLRVC DCH+V K+IS+V+NREIIVRDR RF
Sbjct: 507 YALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRF 566

Query: 448 HHFKEGKCSCKGYW 461
           HHF+E  CSC  YW
Sbjct: 567 HHFRERGCSCNDYW 580



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 112/245 (45%), Gaps = 2/245 (0%)

Query: 31  SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
           SA    G V  A ++F      +   WN ++ GY+       A+ L+  M +  +  N  
Sbjct: 49  SAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSY 108

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +   VL AC  L  L +G+  H  I +  L     L   L+ +Y+ CG M+ A   F  M
Sbjct: 109 TFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEM 168

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            E +  +W++++ G A NG   ++L+LF  M+   V  +  T  SV+  C  +G ++ G+
Sbjct: 169 PEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGK 228

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
                M +E G++  +     LV +Y + G LD AL V   M  +    AW  ++    +
Sbjct: 229 WVHSYMDKE-GVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERD-VTAWSTMIAGYAI 286

Query: 271 YKNTE 275
           + + E
Sbjct: 287 HGHGE 291



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 8/153 (5%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  TA++   +KCG +D A K+F  M ERD  AW+ M+AGYA  G   +AL LF  M+
Sbjct: 242 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMK 301

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT----ALVDMYSKC 137
                 N V+  SVLSAC+H G +++G   H   E    +  +T        +VD++ + 
Sbjct: 302 RSKTIPNCVTFTSVLSACSHSGLVEKG---HQIFETMWTEYKITPQIKHYGCMVDLFCRA 358

Query: 138 GNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           G +  A  F   M  E NV  W +++G    +G
Sbjct: 359 GMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 391


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/431 (49%), Positives = 299/431 (69%), Gaps = 4/431 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+++ A  +F+ +  +D I+WN ++ GYA     +EAL +F  M       
Sbjct: 250 ALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETP 309

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT---LGTALVDMYSKCGNMNKAM 144
           N+V+M+S+L AC HLGA+D GRW HVYI++ +LK  +T   L T+L+DMY+KCGN+  A 
Sbjct: 310 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-KLKGIITNTSLQTSLIDMYAKCGNIEAAN 368

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +  +++ +  ++I G AM+G  + + +L S MK+ G+ P+++TFV +L  C   G
Sbjct: 369 QVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAG 428

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L + GR+ F SM  +Y IEP LEHYGC++DL GR+G   EA ++IN M M+P    WG+L
Sbjct: 429 LSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSL 488

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+++KN E+GEL ++KL+++E KN G+YVLLSNIYA S  WD V  VR ++  KG+K
Sbjct: 489 LKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLK 548

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HP+  EI  ML EI   L   G+V++T+ V+ ++EEE
Sbjct: 549 KVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEE 608

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K G  +RIVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 609 LKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDR 668

Query: 445 NRFHHFKEGKC 455
           +RFHHFK+G C
Sbjct: 669 SRFHHFKDGMC 679



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/253 (38%), Positives = 153/253 (60%), Gaps = 1/253 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +    KVFD     DVV  TAMI+  A  G++D A+KMFDE+P +D ++WNAM
Sbjct: 122 MYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAM 181

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G+ +EAL LF+ M   DVK +E +M +VLS CTH G ++ GR  H +I+ +  
Sbjct: 182 ISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGF 241

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L  AL+D+YSKCG M +A   F G++ ++V +W ++IGG A     +++L +F  
Sbjct: 242 GSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQE 301

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M + G  PN+VT +S+L  C  +G ++ GR  H    ++  GI         L+D+Y + 
Sbjct: 302 MLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKC 361

Query: 240 GRLDEALDVINKM 252
           G ++ A  V + +
Sbjct: 362 GNIEAANQVFDTI 374



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 34/282 (12%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F  + E + ++WN M+ G+A       AL+L+  M    +  N  +   +  +C  
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC------------------------ 137
             A  +G+  H  I +  L + + + T+L+ MY++                         
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 138 -------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
                  GNM+KA   F  +  ++V +W ++I G A  G  +++LELF+ M +  V+P+E
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T  +VL  C   G VE GR+   S    +G    L+    L+DLY + G ++ A  +  
Sbjct: 211 STMATVLSTCTHSGNVELGRQ-IHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL-ETKN 291
            +  K    +W  L+       + +   L  +++++L ET N
Sbjct: 270 GLQYKD-VISWNTLIGGYAYINHHKEALLVFQEMLKLGETPN 310



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   GI   +   QT++I   AKCG+++ A ++FD +  +   + NAM+ G+A  G+
Sbjct: 336 YIDKKLKGI-ITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGR 394

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGT 128
           +  A  L   M+   ++ ++++ V +LSAC+H G  D GR     +  + R++  +    
Sbjct: 395 ADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYG 454

Query: 129 ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
            ++D+  + G   +A +    M  E +   W S++    ++    K+LEL  L+ Q
Sbjct: 455 CMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIH----KNLELGELIAQ 506


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/468 (47%), Positives = 307/468 (65%), Gaps = 8/468 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  GC+    + F  +   ++   TAM+S  +K G +D AR +FD+   +D + W  M
Sbjct: 259 MYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTM 318

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ YA+    +EAL +F  M    +K + V+M+SV+SAC +LG LD+ +W H Y   N L
Sbjct: 319 ISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGL 378

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  + +  AL++MY+KCG ++ A D F  M  RNV +W+S+I   AM+G    SL LF+ 
Sbjct: 379 ESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQ 438

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MKQ  V PNEVTFV VL GC   GLVEEG++ F SM  EY I P +EHYGC+VDL+GRA 
Sbjct: 439 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRAN 498

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EAL+VI  MPM P+   WG+L++ACR++   E+GELA++++++LE  + GA VL+SN
Sbjct: 499 LLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSN 558

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    WD V  +R IM+ K V K  G S I+++ + HEF  GD+ H + NEI   L E
Sbjct: 559 IYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYE 618

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKE-------GVPIR 413
           +  +LKLAGYV +   V+ D+EEEEK+D +  HSEK+A+ FGL++ ++       GV IR
Sbjct: 619 VVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGV-IR 677

Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           IVKNLRVC DCH   K++SKV+  EIIVRDR RFH +K+G CSC+ YW
Sbjct: 678 IVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 142/286 (49%), Gaps = 43/286 (15%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   +T ++   A CG ++ AR +FDEM +RD + WN M+  Y + G   EA  LF  M+
Sbjct: 148 DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMK 207

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +V  +E+ + +++SAC   G +   R  + ++  N ++M   L TALV MY+  G M+
Sbjct: 208 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMD 267

Query: 142 KAMDFFWGMKERNVYT-------------------------------WTSVIGGLAMNGA 170
            AM+FF  M  RN++                                WT++I   A +  
Sbjct: 268 MAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDH 327

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-----EHFDSMRREYGIEPW 225
            +++L +F  M  +G++P+ VT +SV+  C  +G +++ +      H +      G+E  
Sbjct: 328 PQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLN------GLESV 381

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           L     L+++Y + G LD A DV  KMP + +  +W +++NA  M+
Sbjct: 382 LPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSSMINAFAMH 426



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 129/277 (46%), Gaps = 9/277 (3%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P  + I +N++L   ++ G+ R  +  +  ++    + + +S   +L A + + AL +G 
Sbjct: 75  PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
             H +  +        + T L+DMY+ CG +N A + F  M +R+V TW ++I      G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
             +++ +LF  MK + V P+E+   +++  C   G +   R  +D +  E  +       
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFL-IENDVRMDTHLL 253

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV--EL 287
             LV +Y  AG +D A++   KM ++         ++   +   ++ G L   +++  + 
Sbjct: 254 TALVTMYAGAGCMDMAMEFFRKMSVR------NLFVSTAMVSGYSKAGRLDDARVIFDQT 307

Query: 288 ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           E K+   +  + + YAES +    + V + M   G+K
Sbjct: 308 EMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIK 344


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/464 (45%), Positives = 311/464 (67%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +   +++FD I E D V    MI    K GDV  A  +F +MP ++ ++W ++
Sbjct: 132 VYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSL 191

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G  + G+S EAL L + MQ    +L+ V++ S+L+AC +LGALDQGRW H Y+  N +
Sbjct: 192 ISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGV 251

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELF 178
            +   +G ALV+MY KCG+M +A+  F  +K  +++VY WT++I G A++G G ++LE F
Sbjct: 252 DVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWF 311

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
           + M++ G+RPN +TF +VLR C   GLVEEG+E F SM+  Y + P +EHYGC+VDL GR
Sbjct: 312 NRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGR 371

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           +GRLDEA ++I KMPMKP A  WGALL AC ++++  +G      LVE+++ + G Y+ L
Sbjct: 372 SGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQL 431

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           + I A    W     VR  MK+ GV   PG S + ++  VHEF AG + HP+  +I++ L
Sbjct: 432 ATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKL 491

Query: 359 GEISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            +I+ RL+   GY   T  ++ D+E EEKE  + +HSEK+AIAFGLI+ K G  IR++KN
Sbjct: 492 KQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKN 551

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR+C DCH V K++S++++REII+RDR RFHHF++G CSCK YW
Sbjct: 552 LRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 114/268 (42%), Gaps = 36/268 (13%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I EP +  +   +      GD+  A+++F+ +   +   WNA++  Y+   +   A   +
Sbjct: 17  ITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSY 76

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M    V  N  +   +L AC +L A+ +    H  + +      V    AL+ +Y+ C
Sbjct: 77  QQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALC 136

Query: 138 GNMNKAMDFFWGMKER-------------------------------NVYTWTSVIGGLA 166
           G ++ A   F  + ER                               NV +WTS+I GL 
Sbjct: 137 GEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLV 196

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPW 225
             G   ++L L   M+ AG   + V   S+L  C  +G +++GR  HF  +     ++  
Sbjct: 197 EAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRV 256

Query: 226 LEHYGC-LVDLYGRAGRLDEALDVINKM 252
           +   GC LV++Y + G ++EAL V  K+
Sbjct: 257 I---GCALVNMYVKCGDMEEALSVFGKL 281


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/440 (47%), Positives = 296/440 (67%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++V    MI    + GD   AR +FD+M +R  ++WN M++GY+  G  ++A+ +F  M+
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D++ N V++VSVL A + LG+L+ G W H+Y E + +++   LG+AL+DMYSKCG + 
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA+  F  +   NV TW+++I G A++G    +++ F  M+QAGVRP++V ++++L  C 
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEGR +F  M    G+EP +EHYGC+VDL GR+G LDEA + I  MP+KP    W
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 446

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL ACRM  N EMG+  +  L+++   + GAYV LSN+YA   NW  V  +R  MK K
Sbjct: 447 KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEK 506

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            ++K PGCS+I++D  +HEF   D++HP+  EI  ML EIS +L+LAGY   T  V+ ++
Sbjct: 507 DIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNL 566

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE+KE+ L  HSEK+A AFGLIS   G PIRIVKNLR+C DCH   K+ISKV+ R+I V
Sbjct: 567 EEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITV 626

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR RFHHF++G CSC  YW
Sbjct: 627 RDRKRFHHFQDGSCSCMDYW 646



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 140/298 (46%), Gaps = 54/298 (18%)

Query: 22  DVVCQTAMISACAKCG----DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE--ALH 75
           D +    ++  CA       D+D A K+F++MP+R+  +WN ++ G+++  + +   A+ 
Sbjct: 54  DTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAIT 113

Query: 76  LFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH--------------------VY 114
           LF+ +M    V+ N  +  SVL AC   G + +G+  H                    +Y
Sbjct: 114 LFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMY 173

Query: 115 -----------------IERNRLKMT--------VTLGTALVDMYSKCGNMNKAMDFFWG 149
                            IE++ + MT        + L   ++D Y + G+   A   F  
Sbjct: 174 VMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDK 233

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M++R+V +W ++I G ++NG  + ++E+F  MK+  +RPN VT VSVL     +G +E G
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            E       + GI         L+D+Y + G +++A+ V  ++P + +   W A++N 
Sbjct: 294 -EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMING 349


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/441 (49%), Positives = 301/441 (68%), Gaps = 2/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  T +I A AKCGD+D A+++FDE+P RD  AWNA++AG AQ  KS EAL LF+ M+
Sbjct: 134 DILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMR 193

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K+NE+S++  L+AC+ LGAL  G   H  + +  L + V +  A++DMY+KCG  +
Sbjct: 194 AEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFAD 253

Query: 142 KAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           K    F  M   ++V TW ++I   AM+G G ++LELF  M +  V  + VT+++VL  C
Sbjct: 254 KGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCAC 313

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLVEEG   FD M    G+   ++HYG +VDL GRAGRL EA  +IN MP+ P    
Sbjct: 314 NHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVL 372

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W +LL AC+ Y N EM E+ASRKLVE+ + + G +VLLSN+YA  + W+ V  VR+ MK+
Sbjct: 373 WQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKS 432

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + V+K+PG S IEV+  +H+F  GD++HP + EI   L EI  R+K  GYVA T+ V++D
Sbjct: 433 RDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLHD 492

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           I EE+KE+ LC HSEK+A+AFGLIS  EG PIR+ KNLR+C DCH V K+ISK++++EII
Sbjct: 493 IGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEII 552

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDR RFH FK+G CSC+ YW
Sbjct: 553 VRDRARFHRFKDGSCSCRDYW 573



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 115/256 (44%), Gaps = 9/256 (3%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           +P      +NA+L G A+      AL     +   D      S+++   A     AL + 
Sbjct: 64  IPHPSTNDFNALLRGLARGPHPTHALTFLSTILHPDALTFSFSLIASARAL----ALSET 119

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
              H ++ R      + LGT L+D Y+KCG+++ A   F  +  R+V  W ++I GLA  
Sbjct: 120 SQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQG 179

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
               ++L LF+ M+  G + NE++ +  L  C  +G +  G E   +  R+  ++  ++ 
Sbjct: 180 SKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAG-EGVHACVRKMDLDINVQV 238

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY----KNTEMGELASRKL 284
              ++D+Y + G  D+   V + M        W  ++ A  M+    +  E+ E   +  
Sbjct: 239 CNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQ 298

Query: 285 VELETKNHGAYVLLSN 300
           VE+++  + A +   N
Sbjct: 299 VEMDSVTYLAVLCACN 314


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/464 (46%), Positives = 305/464 (65%), Gaps = 26/464 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVV----CQTAMISACAKCGDVDLARKMFDEMPERDPIA 56
           MY E  C+ Y + VFD + E DVV      TA++   AKCG + LAR++F+ + ++  ++
Sbjct: 203 MYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 262

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W AM+AG  +  +  E   LF  MQ  ++  NE++M++                      
Sbjct: 263 WTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN---------------------- 300

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           + R+++   L TALVDMY+KCG++N A   F     R++  W ++I G AM+G GE++L+
Sbjct: 301 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 360

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F+ M++ GV+PN++TF+ +L  C   GLV EG++ F+ M   +G+ P +EHYGC+VDL 
Sbjct: 361 IFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLL 420

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG LDEA ++I  MP+KP+   WGAL+ ACR++KN ++GELA+ +L+E+E +N G  V
Sbjct: 421 GRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNV 480

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           L+SNIYA +  W     VR+ MK  G+KK PG SVIEV+  VHEF  GD++HP+   I  
Sbjct: 481 LMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINE 540

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
           ML E+ R+L  AGYV +T+ V+ +I+EEEKE  L  HSEK+A+AFGLIS     PIRIVK
Sbjct: 541 MLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVK 600

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           NLRVC DCH  TK++SK++ R IIVRDRNRFHHF+EG CSC  Y
Sbjct: 601 NLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/455 (45%), Positives = 305/455 (67%), Gaps = 3/455 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  G    D++   A++   AK   ++ A++MFD MP RD ++WN ++ GY Q G 
Sbjct: 294 HCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGL 353

Query: 70  SREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           + EA+H++  MQ H+ +K  + + VSVL A +HLGAL QG   H    +  L + V +GT
Sbjct: 354 ASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGT 413

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
            ++D+Y+KCG +++AM  F     R+   W +VI G+ ++G G K+L LFS M+Q G+ P
Sbjct: 414 CVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISP 473

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           + VTFVS+L  C   GLV++GR  F+ M+  YGI+P  +HY C+VD++GRAG+LD+A D 
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDF 533

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I  MP+KP +  WGALL ACR++ N EMG++AS+ L EL+ KN G YVL+SN+YA+   W
Sbjct: 534 IRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKW 593

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE--THPRYNEIEVMLGEISRRLK 366
           D V  VR +++ + ++K PG S IEV R V+ F++G++   HP++ EI+  L ++  +++
Sbjct: 594 DGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIR 653

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
             GYV + + V+ D+EE+EKE  L  HSE++AIAFG+I+     P+ I KNLRVC DCH+
Sbjct: 654 SLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHN 713

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            TK ISK+  REIIVRD NRFHHFK+G CSC  +W
Sbjct: 714 ATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 127/252 (50%), Gaps = 3/252 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+   D     A++ A  + G V  A + FDEM  RD  AWNAML+G  +  ++ EA+ L
Sbjct: 98  GLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGL 157

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M +  V  + V++ SVL  C  LG        H+Y  ++ L   + +  A++D+Y K
Sbjct: 158 FGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGK 217

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G + +    F GM  R++ TW S+I G    G    ++E+F  M+ +GV P+ +T +S+
Sbjct: 218 LGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSL 277

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
                  G +  GR  H   +RR + +   +     +VD+Y +  +++ A  + + MP++
Sbjct: 278 ASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAG-NAIVDMYAKLSKIEAAQRMFDSMPVR 336

Query: 256 PHAGAWGALLNA 267
             A +W  L+  
Sbjct: 337 -DAVSWNTLITG 347


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/467 (47%), Positives = 305/467 (65%), Gaps = 7/467 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G +   QK+FD + E  +V  TAM++  AK G +  AR +F+ M  +D + WN M+
Sbjct: 162 YARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMI 221

Query: 62  AGYAQCGKSREALHLFH-------LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
            GYAQ G   EAL  F              V+ NE+++V+VLS+C  +GAL+ G+W H Y
Sbjct: 222 DGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSY 281

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           +E N +K+ V +GTALVDMY KCG++  A   F  M+ ++V  W S+I G  ++G  +++
Sbjct: 282 VENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEA 341

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           L+LF  M   GV+P+++TFV+VL  C   GLV +G E FDSM+  YG+EP +EHYGC+V+
Sbjct: 342 LQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVN 401

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           L GRAGR+ EA D++  M ++P    WG LL ACR++ N  +GE  +  LV     + G 
Sbjct: 402 LLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGT 461

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEI 354
           YVLLSN+YA ++NW  V  VR +MK  GV+K PGCS IEV   VHEF AGD  HPR  +I
Sbjct: 462 YVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDI 521

Query: 355 EVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
             ML +++  LK   Y   T+ V++DI E+EKE +L  HSEK+A+AFGLIS   G  I+I
Sbjct: 522 YSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKI 581

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VKNLRVC DCH V K++SK+  R+II+RDRNRFHHF+ G CSC+ YW
Sbjct: 582 VKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 110/270 (40%), Gaps = 44/270 (16%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           A  G +  +  +F   P  +   W  ++  +A       AL  +  M  H ++ N  ++ 
Sbjct: 66  ASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLS 125

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L ACT    L   R  H +  +  L   + + T LVD Y++ G++  A   F  M ER
Sbjct: 126 SLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPER 181

Query: 154 NV--YT-----------------------------WTSVIGGLAMNGAGEKSLELF---- 178
           ++  YT                             W  +I G A +G   ++L  F    
Sbjct: 182 SLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMM 241

Query: 179 ---SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
                     VRPNE+T V+VL  C  VG +E G+    S     GI+  +     LVD+
Sbjct: 242 MMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKW-VHSYVENNGIKVNVRVGTALVDM 300

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           Y + G L++A  V + M  K    AW +++
Sbjct: 301 YCKCGSLEDARKVFDVMEGKD-VVAWNSMI 329



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R  L     L   L   Y+  G+++ ++  F      NV+ WT +I   A     
Sbjct: 43  HAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLF 102

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
             +L  +S M    ++PN  T  S+L+ C +            S   ++G+   L     
Sbjct: 103 HHALSYYSQMLTHPIQPNAFTLSSLLKACTL-----HPARAVHSHAIKFGLSSHLYVSTG 157

Query: 232 LVDLYGRAGRLDEALDVINKMP 253
           LVD Y R G +  A  + + MP
Sbjct: 158 LVDAYARGGDVASAQKLFDAMP 179


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 197/430 (45%), Positives = 300/430 (69%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           +C   G +  AR +FD MP+   + W+AM+ GY + G S +A+ LF  MQ + V+ +EV+
Sbjct: 173 SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVT 232

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           ++ VL+A T LGAL+  RW   ++ER  +  +VTL  AL+D  +KCG+++ A+  F GM+
Sbjct: 233 VIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQ 292

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           +R+V +WTSVI  LAM G G++++ +F  MK AGV P++V F+ VL  C   G+V+EG  
Sbjct: 293 QRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCG 352

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +FD+M+ EYGIEP +EHYGC+VD++GRAG ++ A++ +  MP++P+   W +L++ACR +
Sbjct: 353 YFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAH 412

Query: 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSV 331
              E+GE  +R L+     +   Y++LSN++A ++ W     +R+ M  +G+KK+PGCS+
Sbjct: 413 GRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSI 472

Query: 332 IEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLC 391
           +E+D EVHEF AGDE+HP+Y +I  M+ E++R L+  G++A T+ V+ D++EE+KE  L 
Sbjct: 473 VELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQ 532

Query: 392 KHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451
            HSEK+AIAF L+    G  +R+VKNLRVC DCH   K IS+V+ REI+VRDR+RFH FK
Sbjct: 533 WHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFK 592

Query: 452 EGKCSCKGYW 461
           +G CSCK +W
Sbjct: 593 DGSCSCKDFW 602



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 5/157 (3%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +GI +   +C  A+I   AKCGDVD A  +F+ M +R  ++W +++   A  G+ +EA+ 
Sbjct: 259 EGIGKSVTLCN-ALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVR 317

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ--GRWAHVYIERNRLKMTVTLGTALVDM 133
           +F  M++  V  ++V+ + VL+AC+H G +D+  G +  + +E   ++  +     +VDM
Sbjct: 318 VFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYG-IEPKIEHYGCMVDM 376

Query: 134 YSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           + + G + +AM+F   M  + N   W S++     +G
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/461 (44%), Positives = 306/461 (66%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +   +K++DG+    ++  TAM+S  AK G V  AR +FD+M ERD + W+AM
Sbjct: 266 MYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAM 325

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+  + +EAL LF  M       ++++M+SV+SAC+H+GAL Q  W H Y++R+  
Sbjct: 326 ISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGF 385

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              +++  AL+DMY+KCGN+ KA + F  M  +NV +W+S+I   AM+G  + +++LF  
Sbjct: 386 GRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRR 445

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+  + PN VTF+ VL  C   GLVEEG + F SM  E+GI P  EHYGC+VDLY RA 
Sbjct: 446 MKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRAN 505

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L +A+++I  MP  P+   WG+L++AC+++   E+GE A+++L+ELE  + GA V+LSN
Sbjct: 506 FLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSN 565

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+ K W+ V  +R+ M  KG+ K    S IE++ +VH F   D  H + +EI   L E
Sbjct: 566 IYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDE 625

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  +LKL GY  +T+ ++ D+EEE+K++ +  HSEK+A+ +GLIS +    IRIVKNLR+
Sbjct: 626 VVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRI 685

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SKV+  EI+VRDR RFHH   G CSC+ YW
Sbjct: 686 CEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 33/303 (10%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   QT +I+  A C  +  AR +FD+M   D +AWN ++ GY Q G   +AL LF  M+
Sbjct: 155 DPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMR 214

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D+K + V + +VLSAC H G L  GR  H +++ N   +   L TAL++MY+ CG M+
Sbjct: 215 SSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMD 274

Query: 142 KAMDFFWG-------------------------------MKERNVYTWTSVIGGLAMNGA 170
            A   + G                               M ER++  W+++I G A +  
Sbjct: 275 LARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQ 334

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
            +++L+LF  M Q    P+++T +SV+  C  VG + +       + R  G    L    
Sbjct: 335 PQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRS-GFGRALSVNN 393

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
            L+D+Y + G L +A +V   MP K +  +W +++NA  M+ N +      R++ E+  +
Sbjct: 394 ALIDMYAKCGNLVKAREVFENMPRK-NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIE 452

Query: 291 NHG 293
            +G
Sbjct: 453 PNG 455


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/469 (46%), Positives = 298/469 (63%), Gaps = 8/469 (1%)

Query: 1   MYAELGCLGYCQKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           MYA  G     + +FDG+  +P VV  TAM+S  AK G +D AR +FD +P +D + WNA
Sbjct: 165 MYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNA 224

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI---- 115
           M+ GY Q G+  EAL LF  M    V+ +EVS+V  LSA   LG  + GRW H ++    
Sbjct: 225 MMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGG 284

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF---WGMKERNVYTWTSVIGGLAMNGAGE 172
            R R+++   +GTALVDMY KCG++ +A+  F    G  +R+V  W ++I G AM+G   
Sbjct: 285 RRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSR 344

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           ++LE F  ++  G+ P ++TF+ VL  C   GLV+EGR  F +M  EYGI P +EHYGC+
Sbjct: 345 EALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCM 404

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292
           VDL GRAGR++EA D++  M  KP A  W +LL ACR++KN  +G+  +  LV     N 
Sbjct: 405 VDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANS 464

Query: 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN 352
           G YVLLSN+YA +  W  V  VR +M+A GV+K PGCS +EV R V EF AGD +HPR  
Sbjct: 465 GTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSA 524

Query: 353 EIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPI 412
           EI   L E++   +  G+V +T  V++D+++  KE  L  HSEK+A+AFGLIS      I
Sbjct: 525 EIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGI 584

Query: 413 RIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +IVKNLR C DCH V K++S+   R+I+ RDRNRFHHF +G CSC  YW
Sbjct: 585 KIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 42/282 (14%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH--LMQIHDVKLNE 89
           A A  G +DLA  +    P+   + + + +  ++  G  R AL L    L+  H +    
Sbjct: 65  AYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTA 124

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM---------------- 133
            ++ + L AC   G L  GR  H Y  +  L     + TAL+ M                
Sbjct: 125 HTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDG 181

Query: 134 ----------------YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                           Y+K G ++ A   F  +  +++  W +++ G   +G   ++L L
Sbjct: 182 MRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRL 241

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPWLEHYGCLVD 234
           F  M ++GV P+EV+ V  L     +G  E GR       +  R   +         LVD
Sbjct: 242 FRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVD 301

Query: 235 LYGRAGRLDEALDVINKMPMKPHAG--AWGALLNACRMYKNT 274
           +Y + G L+EA+ V   +         AW A++N   M+  +
Sbjct: 302 MYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRS 343


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/430 (45%), Positives = 300/430 (69%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           +C   G +  AR +FD MP+   + W+AM+ GY + G S +A+ LF  MQ + V+ +EV+
Sbjct: 173 SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVT 232

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           ++ VL+A T LGAL+  RW   ++ER  +  +VTL  AL+D  +KCG+++ A+  F GM+
Sbjct: 233 VIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQ 292

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           +R+V +WTSVI  LAM G G++++ +F  MK AGV P++V F+ VL  C   G+V+EG  
Sbjct: 293 QRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCG 352

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +FD+M+ EYGIEP +EHYGC+VD++GRAG ++ A++ +  MP++P+   W +L++ACR +
Sbjct: 353 YFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAH 412

Query: 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSV 331
              E+GE  +R L+     +   Y++LSN++A ++ W     +R+ M  +G+KK+PGCS+
Sbjct: 413 GRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSI 472

Query: 332 IEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLC 391
           +E+D EVHEF AGDE+HP+Y +I  M+ E++R L+  G++A T+ V+ D++EE+KE  L 
Sbjct: 473 VELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQ 532

Query: 392 KHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451
            HSEK+AIAF L+    G  +R+VKNLRVC DCH   K IS+V+ REI+VRDR+RFH FK
Sbjct: 533 WHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFK 592

Query: 452 EGKCSCKGYW 461
           +G CSCK +W
Sbjct: 593 DGSCSCKDFW 602



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 5/157 (3%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +GI +   +C  A+I   AKCGDVD A  +F+ M +R  ++W +++   A  G+ +EA+ 
Sbjct: 259 EGIGKSVTLCN-ALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVR 317

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ--GRWAHVYIERNRLKMTVTLGTALVDM 133
           +F  M++  V  ++V+ + VL+AC+H G +D+  G +  + +E   ++  +     +VDM
Sbjct: 318 VFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYG-IEPKIEHYGCMVDM 376

Query: 134 YSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           + + G + +AM+F   M  + N   W S++     +G
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/460 (45%), Positives = 300/460 (65%), Gaps = 1/460 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   +   +++FD +   +      M++  A+CG++D A+ +FDEMP+RD I+W AM+
Sbjct: 318 YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMI 377

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GYAQ G+S EALHLF  M+     LN  ++   LS+C  + AL+ G+  H  + +   +
Sbjct: 378 SGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQ 437

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
                G AL+ MY KCG++ +A D F  + E+++ +W ++I G A +G G+++L LF  M
Sbjct: 438 TGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM 497

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K   ++P++VT V VL  C   GLV++G E+F+SM + YGI    +HY C++DL GRAGR
Sbjct: 498 KMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGR 556

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEAL+++  MP  P A  WGALL A R++ +TE+GE A+ K+ E+E  N G YVLLSN+
Sbjct: 557 LDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNL 616

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W  V  +R  M+ KGVKK+PG S +E+  + H F  GD +HP    I   L E+
Sbjct: 617 YAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEEL 676

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
              LK  G+V++T  V++D+EEEEKE  L  HSEK+A+AFG++S+  G PIR++KNLRVC
Sbjct: 677 DLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVC 736

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH+  K ISK+  R+IIVRD NRFHHF EG CSC  YW
Sbjct: 737 EDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 138/284 (48%), Gaps = 41/284 (14%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +KVF+ + + D++    M+S   K G++  AR +F++MPE+D ++WNAML+G+AQ G  
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--------WAHV--------Y 114
            EA  +F  M +     NE+S   +LSA    G ++  R        W  V        Y
Sbjct: 170 EEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 115 IERNRLKMTVTL-----------GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
           + + RL    +L              ++  Y++ G +++A   F  +  R+V+ WT+++ 
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223
           G   NG  +++  +F  M +     NEV++ +++ G      +E+ RE FD M       
Sbjct: 286 GFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRN--- 338

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
                +  +V  Y + G +D+A  + ++MP +    +W A+++ 
Sbjct: 339 --TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCI-SWAAMISG 379



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 52/304 (17%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I + D+V     ISA  + G  + A  +F+ M  R  + +NAM++GY    K   A  +F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M   D+    +S   +LS                                    Y K 
Sbjct: 115 EKMPDRDL----ISWNVMLSG-----------------------------------YVKN 135

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           GN++ A   F  M E++V +W +++ G A NG  E++ ++F  M    +  NE+++  +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLL 191

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
                 G +E+ R  FDS + ++ I  W     CL+  Y R  RLD+A  + ++MP++  
Sbjct: 192 SAYVQNGRIEDARRLFDS-KMDWEIVSW----NCLMGGYVRKKRLDDARSLFDRMPVRDK 246

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
             +W  ++     Y    +   A R   EL  ++  A+  + + + ++   D    + + 
Sbjct: 247 I-SWNIMITG---YAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEE 302

Query: 318 MKAK 321
           M  K
Sbjct: 303 MPEK 306


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/453 (45%), Positives = 299/453 (66%), Gaps = 3/453 (0%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G+C K    I  P V   TA  +   K  ++DLAR +FDE PE+  +AWNAM++GY Q G
Sbjct: 334 GFCVKS-GIILNPTV--STAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNG 390

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            +  A+ LF  M   +   N V++ ++LSAC  LG+L  G+W H  I+   L+  + + T
Sbjct: 391 STETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVST 450

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALVDMY+KCGN+++A   F  M E+N  TW ++I G  ++G G ++L+L++ M   G  P
Sbjct: 451 ALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNP 510

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           + VTF+SVL  C   GLV EG E F +M  +Y IEP +EHY C+VD+ GR+G+L++AL+ 
Sbjct: 511 SAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEF 570

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I KMP++P    WG LL AC ++K+T++  LAS +L EL+  + G YVLLSNIY+  +N+
Sbjct: 571 IKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNF 630

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
            +  ++RQ++K + + K PGC++IEV+   H F +GD +H    +I   L +++ +++  
Sbjct: 631 PKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREM 690

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GY A T P ++D+EEEEKE  +  HSEK+AIAFGLI+ + G  IRI+KNLRVC DCH  T
Sbjct: 691 GYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTAT 750

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K ISK+  R I+VRD NRFHHFK+G CSC  YW
Sbjct: 751 KFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 12/248 (4%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
            G+C  V  G           +IS  +KCGDV+ AR +F  +   D IA+NAM++G+   
Sbjct: 240 FGFCDYVLTG-----------LISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTAN 288

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G +  ++ LF  +     +++  ++V ++   +  G L      H +  ++ + +  T+ 
Sbjct: 289 GGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVS 348

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           TA   +Y+K   ++ A   F    E+ V  W ++I G   NG+ E ++ LF  M +    
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT 408

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           PN VT  ++L  C  +G +  G+     ++ E  +EP +     LVD+Y + G + EA  
Sbjct: 409 PNAVTITTILSACAQLGSLSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQ 467

Query: 248 VINKMPMK 255
           + + M  K
Sbjct: 468 LFDSMSEK 475



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 126/282 (44%), Gaps = 5/282 (1%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           L +   + DG +  +V   +A++    K   V  ARK+FD MPERD + WN M+ G  + 
Sbjct: 129 LLHAHSIIDG-YGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKN 187

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
               +++ LF  M    V+++  ++ +VL A   L  L  G        +        + 
Sbjct: 188 CCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVL 247

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T L+ +YSKCG++N A   F  +   ++  + ++I G   NG  E S++LF  +  +G R
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGER 307

Query: 188 PNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
            +  T V ++      G +      H   ++    + P +        +Y +   +D A 
Sbjct: 308 VSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVS--TAFTAIYNKLNEIDLAR 365

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
            + ++ P K    AW A+++      +TE      +++++ E
Sbjct: 366 HLFDESPEKT-VVAWNAMISGYTQNGSTETAISLFKEMMKTE 406



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 116/249 (46%), Gaps = 14/249 (5%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACT 100
           AR +F  +P+ D   +N ++ G++       ++ L+ HL +  ++  +  +    ++AC+
Sbjct: 63  ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS 122

Query: 101 ---HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
              HL  L     AH  I+       V +G+ALVD+Y K   +  A   F GM ER+   
Sbjct: 123 NDKHLMLLH----AHSIIDG--YGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVL 176

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSM 216
           W ++I GL  N   + S++LF  M   GVR +  T  +VL     +  ++ G      ++
Sbjct: 177 WNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLAL 236

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
           +  +G   ++     L+ LY + G ++ A  +  ++  +P   A+ A+++       TE 
Sbjct: 237 KIGFGFCDYV--LTGLISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISGFTANGGTEC 293

Query: 277 GELASRKLV 285
                R+L+
Sbjct: 294 SVKLFRELL 302


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/461 (46%), Positives = 297/461 (64%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G      +VFD +     V   ++I+   + GD++ A K+F  MP+ D ++WN M
Sbjct: 385 MYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTM 444

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +    Q    +EA+ LF +MQ   +  ++V+MV V SAC +LGALD  +W H YI++  +
Sbjct: 445 IGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDI 504

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + LGTALVDM+++CG+   AM  F  M +R+V  WT+ IG +AM G G  ++ELF  
Sbjct: 505 HFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDE 564

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M Q G++P+ V FV++L      GLVE+G   F SM+  YGI P   HYGC+VDL GRAG
Sbjct: 565 MLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAG 624

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EAL +IN M M+P+   WG+LL ACR++KN ++   A+ ++ EL+ +  G +VLLSN
Sbjct: 625 LLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSN 684

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  WD V  VR  +K KG  K+PG S IE++ ++ EF  GDE+HP    IE ML E
Sbjct: 685 IYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKE 744

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  RL+  GYV +   V+ D+ E+EKE  L +HSEK+AIAF LIS  +G+PIR+ KNLR+
Sbjct: 745 ICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRI 804

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SK ++REIIVRD NRFH F++G CSC  YW
Sbjct: 805 CSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 153/304 (50%), Gaps = 5/304 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+  + ++I    +CG++D  R++FD+M ER+ ++W +++ GYA+ G  +EA+ LF  
Sbjct: 171 ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFE 230

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    ++ N V+MV V+SAC  L  L  G      I    L++   +  ALVDMY KCG 
Sbjct: 231 MVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGA 290

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++KA   F    ++N+  + +++      G   + L +   M + G RP+ +T +S +  
Sbjct: 291 IDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSA 350

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  V  G+     + R  G+E W      ++++Y + G+ + A  V ++M  K    
Sbjct: 351 CSELDDVSCGKWCHGYVLRN-GLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV- 408

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           +W +L+      +N +M E A +    +   +  ++  +     +   +   I + ++M+
Sbjct: 409 SWNSLIAG--FVRNGDM-ESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQ 465

Query: 320 AKGV 323
           ++G+
Sbjct: 466 SEGI 469



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 11/241 (4%)

Query: 19  HEPDVVCQTAMISACAKCG---DVDLARKMFDEMPERDPIA-----WNAMLAGYAQCGKS 70
           H P  +  T +IS+C + G    ++ A+K  +   E + I      +++++ G++ CG  
Sbjct: 63  HHP--LSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLG 120

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            +A+ +F  +       +  +   VLSACT   AL +G   H  I +   +  + +  +L
Sbjct: 121 YKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSL 180

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  Y +CG ++     F  M ERNV +WTS+IGG A  G  ++++ LF  M + G+RPN 
Sbjct: 181 IHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNS 240

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VT V V+  C  +  ++ G E   +   E  +E        LVD+Y + G +D+A  + +
Sbjct: 241 VTMVGVISACAKLQDLQLG-EQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFD 299

Query: 251 K 251
           +
Sbjct: 300 E 300



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 18/237 (7%)

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH----VYIERNR 119
           + +C    E   L   +  + +  + +S+ +++S+CT +G  +   +A     ++IE N 
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFF-----WGMKERNVYTWTSVIGGLAMNGAGEKS 174
           +  T  + ++L+  +S CG   KA+  F      G    N +T+  V+     + A  + 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDN-FTFPFVLSACTKSAALTEG 158

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
            ++   + + G   +     S++      G ++  R  FD M  E  +  W      L+ 
Sbjct: 159 FQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMS-ERNVVSWTS----LIG 213

Query: 235 LYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
            Y + G   EA+ +  +M    ++P++     +++AC   ++ ++GE     + ELE
Sbjct: 214 GYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE 270


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/468 (46%), Positives = 309/468 (66%), Gaps = 8/468 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  GC+   ++ F  +   ++   TAM+S  +KCG +D A+ +FD+  ++D + W  M
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTM 315

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ Y +    +EAL +F  M    +K + VSM SV+SAC +LG LD+ +W H  I  N L
Sbjct: 316 ISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGL 375

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  +++  AL++MY+KCG ++   D F  M  RNV +W+S+I  L+M+G    +L LF+ 
Sbjct: 376 ESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFAR 435

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MKQ  V PNEVTFV VL GC   GLVEEG++ F SM  EY I P LEHYGC+VDL+GRA 
Sbjct: 436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRAN 495

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EAL+VI  MP+  +   WG+L++ACR++   E+G+ A+++++ELE  + GA VL+SN
Sbjct: 496 LLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSN 555

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA  + W+ V N+R++M+ K V K  G S I+ + + HEF  GD+ H + NEI   L E
Sbjct: 556 IYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDE 615

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKE-------GVPIR 413
           +  +LKLAGYV +   V+ D+EEEEK+D +  HSEK+A+ FGL++ ++       GV IR
Sbjct: 616 VVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IR 674

Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           IVKNLRVC DCH   K++SKV+ REIIVRDR RFH +K G CSC+ YW
Sbjct: 675 IVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 33/281 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   +T  +   A CG ++ AR +FDEM  RD + WN M+  Y + G   EA  LF  M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +V  +E+ + +++SAC   G +   R  + ++  N ++M   L TALV MY+  G M+
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264

Query: 142 KAMDFFWGMKERNVYT-------------------------------WTSVIGGLAMNGA 170
            A +FF  M  RN++                                WT++I     +  
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
            +++L +F  M  +G++P+ V+  SV+  C  +G++++ +    S     G+E  L    
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAK-WVHSCIHVNGLESELSINN 383

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            L+++Y + G LD   DV  KMP + +  +W +++NA  M+
Sbjct: 384 ALINMYAKCGGLDATRDVFEKMPRR-NVVSWSSMINALSMH 423


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/440 (48%), Positives = 295/440 (67%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   TA++    KCG+++ AR +FD M E++ ++W++M+ GYA  G  +EAL LF  M 
Sbjct: 243 NVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKML 302

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K +  +MV VL +C  LGAL+ G WA   I  N       LGTAL+DMY+KCG M+
Sbjct: 303 NEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMD 362

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F GM++++   W + I GLAM+G  + +L LF  M+++G++P+  TFV +L  C 
Sbjct: 363 RAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACT 422

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEGR +F+SM   + + P +EHYGC+VDL GRAG LDEA  +I  MPM+ +A  W
Sbjct: 423 HAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVW 482

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL  CR++++T++ E+  +KL+ LE  + G YVLLSNIYA S  W+    +R IM  +
Sbjct: 483 GALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSER 542

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK+PG S IEVD  VH+F  GD +HP   +I   LGE+++ LK AGYV  T+ V++DI
Sbjct: 543 GVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDI 602

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  +  HSEK+A+AFGLIS      I +VKNLRVC DCH+  K IS++  REIIV
Sbjct: 603 EEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIV 662

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F +G CSCK YW
Sbjct: 663 RDNNRFHCFTDGLCSCKDYW 682



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/254 (35%), Positives = 137/254 (53%), Gaps = 8/254 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D   + ++I+   KCG +D A K+FD++P+++  +W A ++GY   GK REA+ +F  
Sbjct: 140 EADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRR 199

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +    ++ +  S+V VLSAC   G L  G W   YI  N +   V + TALVD Y KCGN
Sbjct: 200 LLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGN 259

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M +A   F GM E+N+ +W+S+I G A NG  +++L+LF  M   G++P+    V VL  
Sbjct: 260 MERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCS 319

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDVINKMPMKP 256
           C  +G +E G    D          +L++      L+D+Y + GR+D A +V   M  K 
Sbjct: 320 CARLGALELG----DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKD 375

Query: 257 HAGAWGALLNACRM 270
               W A ++   M
Sbjct: 376 RV-VWNAAISGLAM 388



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 112/231 (48%), Gaps = 2/231 (0%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G+ + + ++ D+  E +   +N M+ G       +E++ ++H M+   +  +  +   VL
Sbjct: 56  GNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVL 115

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            AC  +   + G   H  + +   +    +  +L+++Y+KCG ++ A   F  + ++N  
Sbjct: 116 KACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFA 175

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +WT+ I G    G   +++++F  + + G+RP+  + V VL  C   G +  G E  D  
Sbjct: 176 SWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG-EWIDEY 234

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             E G+   +     LVD YG+ G ++ A  V + M ++ +  +W +++  
Sbjct: 235 ITENGMVRNVFVATALVDFYGKCGNMERARSVFDGM-LEKNIVSWSSMIQG 284


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/466 (47%), Positives = 312/466 (66%), Gaps = 6/466 (1%)

Query: 1   MYAELGCLGYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           +Y  LG L   ++V + G    DVV    M+S   K GD+  AR++F  MPER+ ++W+A
Sbjct: 122 LYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSA 181

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+    + G+  EAL +F  M   + + + V +VSVL AC HLGA+++GRW H Y+E   
Sbjct: 182 MVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGS 241

Query: 120 L---KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
               +  + L TALVDMY KCG M  A   F G+  R+V  W ++IGGLAMNG GE++LE
Sbjct: 242 FGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALE 301

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M Q G  PNE TF++VL  C   G V+EG+  F SM+ +YGI+P  EHYGCL DL 
Sbjct: 302 LFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ-DYGIKPQREHYGCLADLL 360

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG ++EA  ++  MPM+PHA  WGAL+++C+M+ +  +GE   ++L+ELE  + G YV
Sbjct: 361 GRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYV 420

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           +L N+YA +  W+    +RQ+M+ +G KK  G S IE++  VHEF +GD  HP   +I  
Sbjct: 421 VLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYA 480

Query: 357 MLGEISRRLKLAGYVANTNPVMYDI-EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
           +L +I RRL+L GYV +T+ V+ D+ +EE+K   L  HSE++A+AFG++++ +GVPIRIV
Sbjct: 481 LLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIV 540

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH  +K++SK++ REIIVRDR+RFH F++G CSC  YW
Sbjct: 541 KNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/453 (46%), Positives = 299/453 (66%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           +  K+ D +    DV    ++IS  +KC  VD+A ++F+ +  +  ++WNAM+ GYAQ G
Sbjct: 398 FVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNG 457

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           +  EA+  F  MQ+ ++K +  +MVSV+ A   L  L Q +W H  + R  L   V + T
Sbjct: 458 RINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVAT 517

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALVDMY+KCG ++ A   F  M ER+V TW ++I G   +G G+ +LELF  MK+  ++P
Sbjct: 518 ALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKP 577

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           NEVTF+ VL  C   GLVEEG ++F SM+++YG+EP ++HYG +VDL GRA RL+EA D 
Sbjct: 578 NEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDF 637

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I KMP++P    +GA+L ACR++KN E+GE A+ ++ +L+  + G +VLL+NIYA +  W
Sbjct: 638 IQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMW 697

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
           D+V  VR  M+ KG++K PG SV+E+  EVH F++G  +HP+  +I   L  +  R+K A
Sbjct: 698 DKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAA 757

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GY+ +TN V +D+E+  KE  L  HSEK+AIAF L++   G  I + KNLRVC DCH+ T
Sbjct: 758 GYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNAT 816

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K IS V  REIIVRD  RFHHFK+G CSC  YW
Sbjct: 817 KYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 133/256 (51%), Gaps = 3/256 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ + +G    +V   T +++  AKC  V+ A KMFD MPERD + WN +++GYAQ G 
Sbjct: 198 HCQLIVNGF-ASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGF 256

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
            + AL L   MQ    + + +++VS+L A   +G+L  GR  H Y  R   +  V + TA
Sbjct: 257 GKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTA 316

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LVDMYSKCG++  A   F  M  + V +W S+I G   NG    ++E+F  M    V   
Sbjct: 317 LVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMT 376

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            VT +  L  C  +G VE+GR     +  +  +   +     L+ +Y +  R+D A ++ 
Sbjct: 377 NVTVMGALHACADLGDVEQGR-FVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIF 435

Query: 250 NKMPMKPHAGAWGALL 265
             +  K    +W A++
Sbjct: 436 ENLQHKTLV-SWNAMI 450



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 131/248 (52%), Gaps = 2/248 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  V   TA++   +KCG V  AR +FD M  +  ++WN+M+ GY Q G    A+ +F  
Sbjct: 308 ESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQK 367

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V++  V+++  L AC  LG ++QGR+ H  +++  L   V++  +L+ MYSKC  
Sbjct: 368 MMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKR 427

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A + F  ++ + + +W ++I G A NG   ++++ F  M+   ++P+  T VSV+  
Sbjct: 428 VDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
              + ++ + +     + R   ++  +     LVD+Y + G +  A  + + M  + H  
Sbjct: 488 LAELSVLPQAKWIHGLVIRT-CLDKNVFVATALVDMYAKCGAVHTARKLFDMMDER-HVT 545

Query: 260 AWGALLNA 267
            W A+++ 
Sbjct: 546 TWNAMIDG 553



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 4/243 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT ++S   K G +  A ++F  + ++    ++ ML GYA+     +A+  F  M+   V
Sbjct: 112 QTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGV 171

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           +    +   +L  C     L +G+  H  +  N     V   T +V+MY+KC  + +A  
Sbjct: 172 RPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYK 231

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++  W ++I G A NG G+ +LEL   M++ G RP+ +T VS+L     VG 
Sbjct: 232 MFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGS 291

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  GR  H  SMR   G E ++     LVD+Y + G +  A  + ++M  K    +W ++
Sbjct: 292 LRIGRSIHGYSMRA--GFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKT-VVSWNSM 348

Query: 265 LNA 267
           ++ 
Sbjct: 349 IDG 351



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  CT +  L Q       I +N L       T LV ++ K G++++A   F  ++++ 
Sbjct: 83  LLELCTSMKELHQ---FIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKI 139

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
              + +++ G A N + + ++  F  M+  GVRP    F  +L+ C     + +G+E   
Sbjct: 140 DELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHC 199

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            +    G    +     +V++Y +   ++EA  + ++MP
Sbjct: 200 QLIVN-GFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMP 237


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/445 (46%), Positives = 295/445 (66%), Gaps = 1/445 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+     VC  A++    KC +++ AR +FD+MPERD + W  M+ GYA+CG + E+L L
Sbjct: 262 GLDLDHFVC-AALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVL 320

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M+   V  ++V+MV+V+ AC  LGA+ + R    YI+R + ++ V LGTA++DM++K
Sbjct: 321 FDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 380

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A + F  M+E+NV +W+++I     +G G K+L+LF +M ++G+ PN++T VS+
Sbjct: 381 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 440

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLVEEG   F  M  +Y +   ++HY C+VDL GRAGRLDEAL +I  M ++ 
Sbjct: 441 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEK 500

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
             G WGA L ACR +K+  + E A+  L+EL+ +N G Y+LLSNIYA +  W+ V   R 
Sbjct: 501 DEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRD 560

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  + +KK+PG + IEVD + H+F  GD THPR  EI  ML  +  +L+L GYV +TN 
Sbjct: 561 LMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 620

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V++D++EE K   L  HSEK+AIAFGLI+  E  PIRI+KNLRVC DCH   K++S +  
Sbjct: 621 VLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITG 680

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R IIVRD NRFHHFKEG CSC  YW
Sbjct: 681 RVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 151/239 (63%), Gaps = 6/239 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+     VC  A++    KC +++ AR +FD+M ERD + W  M+ GYA+CGK+ E+L L
Sbjct: 60  GLDLDHFVC-AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL 118

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M+   V  ++V+MV+V+ AC  LGA+ + R    YI+R + ++ V LGTA++DMY+K
Sbjct: 119 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 178

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A + F  M+E+NV +W+++I     +G G K+L+LF +M  +G+ P+++T  S+
Sbjct: 179 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASL 238

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMP 253
           L  C  +  ++ GR     +  ++G++  L+H+ C  LVD+YG+   +++A  + +KMP
Sbjct: 239 LYACSDLKNLQMGRL-IHHIVYKFGLD--LDHFVCAALVDMYGKCREIEDARFLFDKMP 294



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 155/270 (57%), Gaps = 8/270 (2%)

Query: 3   AELGCLGYCQKVFDGIH----EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+LG +   + + D I     + DV+  TAMI   AKCG V+ AR++FD M E++ I+W+
Sbjct: 142 AKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWS 201

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+A Y   G+ R+AL LF +M    +  +++++ S+L AC+ L  L  GR  H  + + 
Sbjct: 202 AMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKF 261

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L +   +  ALVDMY KC  +  A   F  M ER++ TWT +IGG A  G   +SL LF
Sbjct: 262 GLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLF 321

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYG 237
             M++ GV P++V  V+V+  C  +G + + R   D + R+++ ++  L     ++D++ 
Sbjct: 322 DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG--TAMIDMHA 379

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           + G ++ A ++ ++M  K +  +W A++ A
Sbjct: 380 KCGCVESAREIFDRMEEK-NVISWSAMIAA 408



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 109/209 (52%), Gaps = 4/209 (1%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ G+A+ G        F  +     + +  ++  V+ AC  L  L  GR  H  + +  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L +   +  ALVDMY KC  +  A   F  M+ER++ TWT +IGG A  G   +SL LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGR 238
            M++ GV P++V  V+V+  C  +G + + R   D + R+++ ++  L     ++D+Y +
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG--TAMIDMYAK 178

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNA 267
            G ++ A ++ ++M  K +  +W A++ A
Sbjct: 179 CGCVESAREIFDRMEEK-NVISWSAMIAA 206


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/460 (45%), Positives = 299/460 (65%), Gaps = 1/460 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   +   +++FD +   +      M++  A+CG++D A+ +FDEMP+RD I+W AM+
Sbjct: 318 YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMI 377

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GYAQ G+S EALHLF  M+     LN  ++   LS+C  + AL+ G+  H  + +   +
Sbjct: 378 SGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQ 437

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
                G AL+ MY KCG++ +A D F  + E+++ +W ++I G A +G G+++L LF  M
Sbjct: 438 TGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM 497

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K   ++P++VT V VL  C   G V++G E+F+SM + YGI    +HY C++DL GRAGR
Sbjct: 498 KMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGR 556

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEAL+++  MP  P A  WGALL A R++ +TE+GE A+ K+ E+E  N G YVLLSN+
Sbjct: 557 LDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNL 616

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W  V  +R  M+ KGVKK+PG S +E+  + H F  GD +HP    I   L E+
Sbjct: 617 YAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEEL 676

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
              LK  G+V++T  V++D+EEEEKE  L  HSEK+A+AFG++S+  G PIR++KNLRVC
Sbjct: 677 DLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVC 736

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH+  K ISK+  R+IIVRD NRFHHF EG CSC  YW
Sbjct: 737 EDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 138/284 (48%), Gaps = 41/284 (14%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +KVF+ + + D++    M+S   K G++  AR +F++MPE+D ++WNAML+G+AQ G  
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--------WAHV--------Y 114
            EA  +F  M +     NE+S   +LSA    G ++  R        W  V        Y
Sbjct: 170 EEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 115 IERNRLKMTVTL-----------GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
           + + RL    +L              ++  Y++ G +++A   F  +  R+V+ WT+++ 
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223
           G   NG  +++  +F  M +     NEV++ +++ G      +E+ RE FD M       
Sbjct: 286 GFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRN--- 338

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
                +  +V  Y + G +D+A  + ++MP +    +W A+++ 
Sbjct: 339 --TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCI-SWAAMISG 379



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 52/304 (17%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I + D+V     ISA  + G  + A  +F+ M  R  + +NAM++GY    K   A  +F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M   D+    +S   +LS                                    Y K 
Sbjct: 115 EKMPDRDL----ISWNVMLSG-----------------------------------YVKN 135

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           GN++ A   F  M E++V +W +++ G A NG  E++ ++F  M    +  NE+++  +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLL 191

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
                 G +E+ R  FDS + ++ I  W     CL+  Y R  RLD+A  + ++MP++  
Sbjct: 192 SAYVQNGRIEDARRLFDS-KMDWEIVSW----NCLMGGYVRKKRLDDARSLFDRMPVRDK 246

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
             +W  ++     Y    +   A R   EL  ++  A+  + + + ++   D    + + 
Sbjct: 247 I-SWNIMITG---YAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEE 302

Query: 318 MKAK 321
           M  K
Sbjct: 303 MPEK 306


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/436 (48%), Positives = 292/436 (66%), Gaps = 13/436 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++I   AKCG++ L  ++F   P RD ++WN+M+  + Q G   EAL LF  M+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +VK N ++MV VLSAC      + GRW H YIERNR+  ++TL  A++DMY+KCG++ 
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVE 289

Query: 142 KAMDFFWGMKERNVYTWTSVI------------GGLAMNGAGEKSLELFSLMKQAGVRPN 189
            A   F  M E+++ +WT+++             GLAM+G G+ ++ LFS M++  V+PN
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPN 349

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            VTF ++L  C  VGLVEEGR  F+ M   YG+ P ++HY C+VD+ GRAG L+EA+++I
Sbjct: 350 AVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELI 409

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            KMPM P A  WGALL AC +++N  + E A  +L+ELE  NHGAYVLLSNIYA++  WD
Sbjct: 410 EKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWD 469

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
           RV  +R++M+  G+KK PGCS IEVD  VHEF  GD +HP   +I   L EI  RL+  G
Sbjct: 470 RVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIG 529

Query: 370 YVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV N + ++  +EEE+ KE  L  HSEK+AIAFGLIS  +  PIRIVKNLRVC DCH V 
Sbjct: 530 YVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVA 589

Query: 429 KMISKVFNREIIVRDR 444
           K++SK+++REI++RDR
Sbjct: 590 KLVSKLYDREILLRDR 605



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-- 77
           +P    +    +A +    +D A+++FD++P  +   WN ++  YA      ++L +F  
Sbjct: 66  DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLR 125

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            L Q  D   ++ +   ++ A + L  L  G+  H  + +  L   V +  +L+  Y+KC
Sbjct: 126 MLHQSPDFP-DKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC 184

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +      F     R+V +W S+I      G  E++LELF  M+   V+PN +T V VL
Sbjct: 185 GELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVL 244

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             C      E GR     + R   I   L     ++D+Y + G +++A  + +KMP K
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNR-IXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK 301



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 27/169 (15%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +++FD + E D+V  T M+   AK G+ D A+                 
Sbjct: 281 MYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ----------------- 323

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             G A  G  ++A+ LF  MQ   VK N V+  ++L AC+H+G +++GR    +  +  L
Sbjct: 324 --GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR---TFFNQMEL 378

Query: 121 KMTVTLGTA----LVDMYSKCGNMNKAMDFFWGMKERNVYT-WTSVIGG 164
              V  G      +VD+  + G + +A++    M      + W +++G 
Sbjct: 379 VYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGA 427


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/458 (48%), Positives = 303/458 (66%), Gaps = 6/458 (1%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           +G L    K+FD +   D V    MI+A       + A K+F+ MPE+D +AWN+++ G+
Sbjct: 28  VGDLNLACKLFDEMPHKDTVTLDTMITAY-----FESAYKVFELMPEKDIVAWNSVINGF 82

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           A  GK  EAL L+  M    V+ +  +MVS+LSAC  L  L  GR AHVY+ +  L   +
Sbjct: 83  ALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNL 142

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
               AL+D+Y+KCG +++A   F  M  ERNV +WTS+I GLA+NG G+++LE F  M++
Sbjct: 143 HANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMER 202

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            G+ P+E+TFV VL  C   G+V EG E+F  M+ +Y I P +EHYGC+VDL GRAG L 
Sbjct: 203 EGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLK 262

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           EA D I  MP++P+A  W  LL AC ++ +  +G  A  +L++LE K+ G YVLLSN+YA
Sbjct: 263 EAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYA 322

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
             + W  V  VR+ M ++GV+K PG S++E+   VHEF  GD THP+   I  ML E++ 
Sbjct: 323 SEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAM 382

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           +LKLAGYV +T  V+ DIEEEEKE  L  HSEK+AIAF LI+   G PIRI+KNLRVC D
Sbjct: 383 KLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPIRIIKNLRVCAD 442

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH   K+ISKVF R+I+VRD +RFHHF++G CSC+ YW
Sbjct: 443 CHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/441 (49%), Positives = 300/441 (68%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   Q A++S  AK G V +ARK+FD+MPE+  +AWN+M++GY Q G  +EA+ LF LMQ
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK +  + VS+LSAC  +GA+  G W H YI RN   + V LGTAL++MYS+CGN++
Sbjct: 212 DLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVS 271

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA + F  M+E+N+  WT++I G  M+G G +++ELF+ M   G RPN VTFV+VL  C 
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACA 331

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGA 260
             GLV+EGR+ F +M++EYG+ P +EH  C+VD+ GRAG L+EA   I N  P +P    
Sbjct: 332 HAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAV 391

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W A+L AC+M+KN ++G   +  L+ +E +N G YV+LSNIYA +   DRV  +R IM  
Sbjct: 392 WTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIR 451

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
             +KK  G S I+VD +V+ F  GD++HP+ N+I + L E+  R + AGY+  +  VM++
Sbjct: 452 NRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHE 511

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EEEE+E  L  HSEK+AIAFGL+    GV IRIVKNLR+C DCH   K IS + NREI 
Sbjct: 512 VEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREIN 571

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDR RFHHFK+G CSC+ YW
Sbjct: 572 VRDRLRFHHFKDGSCSCQDYW 592



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 43/275 (15%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A A    +   R++F  +P+ D   +++++   ++    +E+L  +  M + ++  +  +
Sbjct: 61  AYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYT 120

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
             +V+ +   L A   G   H ++      +   +  ALV  Y+K G++  A   F  M 
Sbjct: 121 FSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMP 180

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL------ 205
           E+ V  W S+I G   NG G++++ELF LM+  GV+P+  TFVS+L  C  VG       
Sbjct: 181 EKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFW 240

Query: 206 -----------------------------VEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
                                        V + RE FDSM  E  I  W      ++  Y
Sbjct: 241 VHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSM-EEKNIVAWT----AMISGY 295

Query: 237 GRAGRLDEALDVINKMPM---KPHAGAWGALLNAC 268
           G  G   +A+++ N+M     +P+   + A+L+AC
Sbjct: 296 GMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSAC 330



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 71/255 (27%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G +   ++VFD + E ++V  TAMIS                             
Sbjct: 263 MYSRCGNVSKAREVFDSMEEKNIVAWTAMIS----------------------------- 293

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
             GY   G   +A+ LF+ M     + N V+ V+VLSAC H G +D+GR     +++   
Sbjct: 294 --GYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYG 351

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLEL 177
           L  +V     +VDM  + G++N+A  F      KE     WT+++G   M+    K+ +L
Sbjct: 352 LVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMH----KNFDL 407

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
                  GV                     E  EH  S+  E    P   HY  L ++Y 
Sbjct: 408 -------GV---------------------EVAEHLLSIEPE---NPG--HYVMLSNIYA 434

Query: 238 RAGRLDEALDVINKM 252
            AGR+D    + N M
Sbjct: 435 LAGRMDRVEKIRNIM 449


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/391 (52%), Positives = 278/391 (71%), Gaps = 4/391 (1%)

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EAL +FH MQ   ++  +  + SVLSAC +LGALDQGRW H Y +RN +++   LGT+LV
Sbjct: 237 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 296

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DMY+KCG ++ A + F  M  + V +W ++IGGLAM+G  E +++LFS M    + PNE+
Sbjct: 297 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEI 353

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TFV VL  C   GLV++G   F+SMR+EYG+EP +EHYGC+VDL GRAG L EA  V++ 
Sbjct: 354 TFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSS 413

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           +P +P    WGALL ACR + N E+GE   + L+ELE +N G Y LLSNIYA++  W+ V
Sbjct: 414 IPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEV 473

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDR-EVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
             VR++MK +G+K  PG S+I++ R EVH+F  GD +HP+  +I  ML ++  RL++ GY
Sbjct: 474 GEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGY 533

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
             + + V++DI+EEEKE  + +HSEK+AI FGLI+   G  IRIVKNLRVC DCH  TK+
Sbjct: 534 EPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKL 593

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           IS+V+NREIIVRDR R+HHF+ G CSCK +W
Sbjct: 594 ISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 15/236 (6%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
           ++FD + + +   WN M+    +  +  +A+ L++ M +   + N+ +  +VL AC+  G
Sbjct: 113 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 172

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
            + +G   H ++ ++ L     + ++ + MY+  G + +A         R +      + 
Sbjct: 173 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEA--------RRILDDKGGEVD 224

Query: 164 GLAM---NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRRE 219
            + M    G   ++LE+F  M++  +RP +    SVL  C  +G +++GR  H  + R  
Sbjct: 225 AVCMPDRKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNS 284

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
             ++  L     LVD+Y + GR+D A +V  KM  K    +W A++    M+   E
Sbjct: 285 IQLDGVLG--TSLVDMYAKCGRIDLAWEVFEKMSNK-EVSSWNAMIGGLAMHGRAE 337


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/458 (46%), Positives = 299/458 (65%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ++G L     +F+ + E +     ++I+   + GD+D AR++F +MPE++ ++W  M+ G
Sbjct: 220 KVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMING 279

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           ++Q G   +AL +F  M    V+ N++++VS L ACT +GAL  G   H Y+  N  ++ 
Sbjct: 280 FSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLN 339

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             +GTALVDMY+KCGN+  A   F   K +++ TW+ +I G A++G  +++L+ F  MK 
Sbjct: 340 RGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKS 399

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           AG+ P+EV F+++L  C   G V++G   F+SMR +Y IEP ++HY  +VDL GRAGRLD
Sbjct: 400 AGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLD 459

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           EAL  I  MP+ P    WGAL  ACR +KN EM EL + KL++LE K+ G+YV LSN+YA
Sbjct: 460 EALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYA 519

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
               W+ V  VR +MK +GV+K PG S IEV+ +VH F AGD  H R  EI + L EI+ 
Sbjct: 520 AVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITA 579

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
             K  GY+  T  V+++IEEEEKED L  HSEK+A+AFGLIS   G  IRIVKNLRVC D
Sbjct: 580 SAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGD 639

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH + K  SK+  REII+RD  RFHHFK+G CSC  YW
Sbjct: 640 CHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 111/289 (38%), Gaps = 67/289 (23%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +IS+      +D A  +F      +   +NA++ G A+  +   ++  F LM    ++
Sbjct: 76  TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY------------ 134
            + +++  VL +   L  +  GR  H  + +  L+    +  +LVDMY            
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQL 195

Query: 135 -----------------------SKCGNMNKAMDFFWGMKERNVYT-------------- 157
                                   K G+++KA   F  M ERN  +              
Sbjct: 196 FDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDL 255

Query: 158 -----------------WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
                            WT++I G + NG  EK+L +F  M + GVRPN++T VS L  C
Sbjct: 256 DRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLAC 315

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
             +G ++ G E   +     G +        LVD+Y + G +  A  V 
Sbjct: 316 TKIGALQVG-ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 363



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 34/250 (13%)

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           E   + ++ A   L  L Q    H  I  + L     + T L+       +++ A+  F 
Sbjct: 40  ETHFIPLIHASNTLPQLHQ---IHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFR 96

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR---------- 198
                N++ + ++I GLA N   E S+  F LM +  +RP+ +T   VL+          
Sbjct: 97  CFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGL 156

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           G C+ G V +    FDS  R             LVD+Y + G L   L + ++ P +  A
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRV-----------SLVDMYVKIGELGFGLQLFDESPQRNKA 205

Query: 259 GA---WGALLNACRMYKNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
            +   W  L+N C      ++G+L  A+     +  +N G++  L N +  + + DR   
Sbjct: 206 ESILLWNVLINGC-----CKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARE 260

Query: 314 VRQIMKAKGV 323
           +   M  K V
Sbjct: 261 LFVQMPEKNV 270


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/437 (47%), Positives = 296/437 (67%), Gaps = 4/437 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A I   +KCGDV++A  +F+ +  +D ++WN ++ GY      +EAL LF  M       
Sbjct: 256 AFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 315

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+SVL AC HLGA+D GRW HVYI++ RLK       L T+L+DMY+KCG++  A 
Sbjct: 316 NDVTMLSVLPACAHLGAIDIGRWIHVYIDK-RLKGVTNGSALRTSLIDMYAKCGDIEAAH 374

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  +++ +W ++I G AM+G    + +LFS M++ G+ P+++T V +L  C   G
Sbjct: 375 QVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSG 434

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L++ GR  F S+ ++Y I P LEHYGC++DL G AG   EA ++I+ MPM+P    W +L
Sbjct: 435 LLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSL 494

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+ E  ++KL+E+E +N G+YVLLSNIYA +  W+ V  +R+++  KG+K
Sbjct: 495 LKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMK 554

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HP+  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 555 KVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEE 614

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K G  + +VKNLRVC +CH+ TK+ISK++ REI+ RDR
Sbjct: 615 WKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDR 674

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHF++G CSC  YW
Sbjct: 675 TRFHHFRDGVCSCCDYW 691



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 152/273 (55%), Gaps = 3/273 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L   +KVFD   + DVV  TA+I+  A  GDV  ARK+FD + ERD ++WNAM
Sbjct: 127 MYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAM 186

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           + GY +     EAL LF  M   +V+ +E ++VSVLSAC   G+++ GR  H  ++ +  
Sbjct: 187 ITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHG 246

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
              ++ +  A + +YSKCG++  A   F G+  ++V +W ++IGG       +++L LF 
Sbjct: 247 FGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQ 306

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M ++G  PN+VT +SVL  C  +G ++ GR  H    +R  G+         L+D+Y +
Sbjct: 307 EMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAK 366

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            G ++ A  V N M M     +W A++    M+
Sbjct: 367 CGDIEAAHQVFNSM-MHKSLSSWNAMIFGFAMH 398



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 36/290 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q V  G+H  +    + ++  C      D    A  +F+   E + + WN ML G A 
Sbjct: 2   HAQMVKTGLHNTNYAL-SKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-------------- 112
                  L ++  M       N  +   +L +C      ++GR  H              
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 113 ------VYIERNRL-----------KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
                 +Y    RL           +  V   TAL+  Y+  G++  A   F  + ER+V
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W ++I G   N   E++LELF  M +  VRP+E T VSVL  C   G +E GRE    
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +   +G    L+     + LY + G ++ A  +   +  K    +W  L+
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKD-VVSWNTLI 289



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 86/164 (52%), Gaps = 7/164 (4%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     + +T++I   AKCGD++ A ++F+ M  +   +WNAM+ G+A  G+
Sbjct: 342 YIDKRLKGVTNGSAL-RTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGR 400

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY---IERNRLKMTVTL 126
           +  A  LF  M+ + ++ +++++V +LSAC+H G LD GR  H++    +   +   +  
Sbjct: 401 ANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGR--HIFKSVTQDYNITPKLEH 458

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
              ++D+    G   +A +    M  E +   W S++    M+G
Sbjct: 459 YGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHG 502


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/440 (47%), Positives = 301/440 (68%), Gaps = 1/440 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +  Q +++   A CGDV  A K+FD+MPE+D +AWN+++ G+A+ GK  EAL L+  M +
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDL 215

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K +  ++VS+LSAC  +GAL  G+  HVY+ +  L   +     L+D+Y++CG + +
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCC 201
           A   F  M ++N  +WTS+I GLA+NG G++++ELF  M+ + G+ P E+TFV +L  C 
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACS 335

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G+V+EG E+F  M  EY IEP +EH+GC+VDL  RAG++ +A + I KMPM+P+   W
Sbjct: 336 HCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIW 395

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL AC ++ ++++ ELA  K+++LE  + G YVLLSN+YA  + W  V  +R+ M   
Sbjct: 396 RTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GV+K+PG S++EV   VHEF  GD++HP+ + I   L E++ RL+L GYV   + V  D+
Sbjct: 456 GVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDV 515

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE+ L  HSEK+AIAF LIS  E  PIR+VKNL+VC DCH   K++SKV+NREI+V
Sbjct: 516 EEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVV 575

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR+RFHHFK G CSC+ YW
Sbjct: 576 RDRSRFHHFKNGSCSCQDYW 595



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 14/249 (5%)

Query: 42  ARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSAC 99
           A K+F ++ +  +   WN ++ GYA+ G S  A+ L+  M+    V+ +  +   +L A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
             +  +  G   H  + R+     + +  +L+ +Y+ CG++  A   F  M E+++  W 
Sbjct: 132 GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           SVI G A NG  E++L L++ M   G++P+  T VS+L  C  +G +  G+  F     +
Sbjct: 192 SVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKR-FHVYMIK 250

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL----------NACR 269
            G+   L     L+DLY R GR++EA  + ++M  K ++ +W +L+           A  
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLIVGLAVNGLGKEAIE 309

Query: 270 MYKNTEMGE 278
           ++KN E  E
Sbjct: 310 LFKNMESKE 318



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 41/218 (18%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAK---------------------------------- 35
           Y +    GI +PD     +++SACAK                                  
Sbjct: 210 YTEMDLKGI-KPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 36  -CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN-EVSMV 93
            CG V+ A+ +FDEM +++ ++W +++ G A  G  +EA+ LF  M+  +  L  E++ V
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFV 328

Query: 94  SVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK- 151
            +L AC+H G + +G  +     E  +++  +     +VD+ ++ G + KA ++   M  
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPM 388

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           + NV  W +++G   ++  G+  L   + MK   + PN
Sbjct: 389 QPNVVIWRTLLGACTVH--GDSDLAELARMKILQLEPN 424


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 296/442 (66%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  V  Q +++   A CGD + A K+F+ M ERD +AWN+M+ G+A  G+  EAL LF  
Sbjct: 150 ESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFRE 209

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  V+ +  ++VS+LSA   LGAL+ GR  HVY+ +  L     +  +L+D+Y+KCG 
Sbjct: 210 MSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGA 269

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  M ERN  +WTS+I GLA+NG GE++LELF  M+  G+ P+E+TFV VL  
Sbjct: 270 IREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYA 329

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+++EG E+F  M+ E GI P +EHYGC+VDL  RAG + +A + I  MP++P+A 
Sbjct: 330 CSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAV 389

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL AC ++ +  +GE+A   L+ LE K+ G YVLLSN+YA  + W  V  +R+ M 
Sbjct: 390 IWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSML 449

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             GVKK PG S++E+   V+EF  GD +HP+  ++  +L +I+  LKL GYV +T  V+ 
Sbjct: 450 KDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLA 509

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DIEEEEKE  L  HSEKVAIAF L++   G PIR++KNLRVC DCH   K+I+K+++REI
Sbjct: 510 DIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREI 569

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RDR+RFHHF+ G CSCK YW
Sbjct: 570 VIRDRSRFHHFRGGSCSCKDYW 591



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 5/250 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
            ++ PD+  +  + +  +    +  A  +F  +   +   WN ++ GYA+      A   
Sbjct: 47  SLNNPDM-GKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLF 105

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           +  M +  V+ +  +   +L A +    + +G   H    RN  +  V +  +L+ +Y+ 
Sbjct: 106 YRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAA 165

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG+   A   F  MKER++  W S+I G A+NG   ++L LF  M   GV P+  T VS+
Sbjct: 166 CGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSL 225

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L     +G +E GR  H   ++   G+         L+DLY + G + EA  V ++M  +
Sbjct: 226 LSASAELGALELGRRVHVYLLK--VGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSER 283

Query: 256 PHAGAWGALL 265
            +A +W +L+
Sbjct: 284 -NAVSWTSLI 292


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/442 (46%), Positives = 296/442 (66%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+  + A++S    CGD+  A  +F++MPERD ++WN ++AG+ Q G+++ A   F +
Sbjct: 540 ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKM 599

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   VK ++++   +L+AC    AL +GR  H  I    L   V +GT L+ MY+KCG+
Sbjct: 600 MQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGS 659

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  + ++NVY+WTS+I G A +G G+++LELF  M+Q GV+P+ +TFV  L  
Sbjct: 660 IDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSA 719

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL++EG  HF+SM+ ++ IEP +EHYGC+VDL+GRAG L EA++ INKM +KP + 
Sbjct: 720 CAHAGLIKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSR 778

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL AC+++ + E+ E  ++K +EL+  + G YV+LSNIYA +  W  V  +R++M 
Sbjct: 779 LWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVML 838

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +GV K PG S IEVD  VH F + D+THP+  EI   LG +   +K  GYV +T  V++
Sbjct: 839 DRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLH 898

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+ EKE  LC HSE++AIA+GL+      PI I KNLRVC DCH  TK+ISK+  R+I
Sbjct: 899 DVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQI 958

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I RD NRFHHFK+G CSC  +W
Sbjct: 959 IARDSNRFHHFKDGVCSCGDFW 980



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 150/249 (60%), Gaps = 4/249 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+   TA+I+   KCG VD A K+F+ +P RD I W +M+ G A+  + ++A +LF +
Sbjct: 237 DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQV 296

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V+ ++V+ VS+L AC H  AL+QG+  H  ++   L   + +GTAL+ MY+KCG+
Sbjct: 297 MEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGS 356

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A++ F  +K RNV +WT++I G A +G  E++   F+ M ++G+ PN VTF+S+L  
Sbjct: 357 MEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGA 416

Query: 200 CCVVGLVEEGREHFDS-MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     +++GR+  D  ++  Y  +  +     L+ +Y + G L +A +V  ++  K + 
Sbjct: 417 CSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSLMDARNVFERIS-KQNV 473

Query: 259 GAWGALLNA 267
            AW A++ A
Sbjct: 474 VAWNAMITA 482



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 150/267 (56%), Gaps = 2/267 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +PD+     +IS  AKCG+ + A+++FDEMP++D  +WN +L GY Q  +  EA  L   
Sbjct: 136 QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ 195

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    VK ++ + V +L+AC     +D+G      I        + +GTAL++M+ KCG 
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGG 255

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F  +  R++ TWTS+I GLA +   +++  LF +M++ GV+P++V FVS+L+ 
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKA 315

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C     +E+G+     M +E G++  +     L+ +Y + G +++AL+V N +  + +  
Sbjct: 316 CNHPEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR-NVV 373

Query: 260 AWGALLNACRMYKNTEMGELASRKLVE 286
           +W A++     +   E   L   K++E
Sbjct: 374 SWTAMIAGFAQHGRMEEAFLFFNKMIE 400



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 132/242 (54%), Gaps = 2/242 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +TA++S  AKCG +  AR +F+ + +++ +AWNAM+  Y Q  K   A+  F  +    +
Sbjct: 445 RTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGI 504

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           K +  +  S+L+ C    AL+ G+W    I R   +  + +  ALV M+  CG++  AM+
Sbjct: 505 KPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMN 564

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++ +W ++I G   +G  + + + F +M+++GV+P+++TF  +L  C     
Sbjct: 565 LFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEA 624

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           + EGR    ++  E  ++  +     L+ +Y + G +D+A  V + +P K +  +W +++
Sbjct: 625 LTEGRR-LHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMI 682

Query: 266 NA 267
             
Sbjct: 683 TG 684



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 38/302 (12%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           NA L   ++ G+  EA+ +   +    ++++  +  S+L  C     L  G   H +I+ 
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           ++++  + +   L+ MY+KCGN N A   F  M +++VY+W  ++GG   +   E++  L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
              M Q GV+P++ TFV +L  C     V++G E F S+    G +  L     L++++ 
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF-SLILNAGWDTDLFVGTALINMHI 251

Query: 238 RAGRLDEALDVINKMP----------------------------------MKPHAGAWGA 263
           + G +D+AL V N +P                                  ++P   A+ +
Sbjct: 252 KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311

Query: 264 LLNACRMYKNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           LL AC   +  E G+   A  K V L+T+ +    LLS +Y +  + +  + V  ++K +
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLS-MYTKCGSMEDALEVFNLVKGR 370

Query: 322 GV 323
            V
Sbjct: 371 NV 372


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/460 (44%), Positives = 292/460 (63%), Gaps = 4/460 (0%)

Query: 6    GCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
             CL   +KV   I    +E D     A+ISA +K G +  ARK+FD+MP RD ++WN M+
Sbjct: 702  ACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMI 761

Query: 62   AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            AGYAQ G    AL   + MQ   V LN+ S VS+L+AC+   AL++G+  H  I + +++
Sbjct: 762  AGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQ 821

Query: 122  MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
              V +G AL+ MY+KCG++ +A + F    E+NV TW ++I   A +G   K+L+ F+ M
Sbjct: 822  GDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCM 881

Query: 182  KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             + G++P+  TF S+L  C   GLV EG   F S+  ++G+ P +EHYGCLV L GRAGR
Sbjct: 882  DKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGR 941

Query: 242  LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
              EA  +IN+MP  P A  W  LL ACR++ N  + E A+   ++L  +N   YVLLSN+
Sbjct: 942  FQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNV 1001

Query: 302  YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
            YA +  WD V  +R++M+ +G++K PG S IEVD  +HEF A D +HP   EI   L  +
Sbjct: 1002 YAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRL 1061

Query: 362  SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
            S  ++ AGY  +T  V++++++E +E +LC HSE++AIA+GL+    G PIRI KNLR+C
Sbjct: 1062 SLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRIC 1121

Query: 422  WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
             DCH  +K ISK+  REII RD NRFH FK GKCSC+ +W
Sbjct: 1122 GDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 148/247 (59%), Gaps = 2/247 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  DV    ++IS  A+CGD+  AR++F+ MP+RD I+WNA++AGYA+     EA+ L+ 
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYK 475

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ   VK   V+ + +LSACT+  A   G+  H  I R+ +K    L  AL++MY +CG
Sbjct: 476 QMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCG 535

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++ +A + F G + R++ +W S+I G A +G+ E + +LF  MK+ G+ P+++TF SVL 
Sbjct: 536 SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLV 595

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           GC     +E GR+    +  E G++  +     L+++Y R G L +A +V + +  + + 
Sbjct: 596 GCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NV 653

Query: 259 GAWGALL 265
            +W A++
Sbjct: 654 MSWTAMI 660



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 1/227 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+++   +CG +  A+ +F+    RD I+WN+M+AG+AQ G    A  LF  M+   ++
Sbjct: 525 NALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLE 584

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            ++++  SVL  C +  AL+ GR  H+ I  + L++ V LG AL++MY +CG++  A + 
Sbjct: 585 PDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEV 644

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++ RNV +WT++IGG A  G   K+ ELF  M+  G +P + TF S+L+ C     +
Sbjct: 645 FHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACL 704

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           +EG++    +    G E        L+  Y ++G + +A  V +KMP
Sbjct: 705 DEGKKVIAHILNS-GYELDTGVGNALISAYSKSGSMTDARKVFDKMP 750



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I+   +CG +  A ++F  +  R+ ++W AM+ G+A  G+ R+A  LF  MQ
Sbjct: 621 DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K  + +  S+L AC     LD+G+    +I  +  ++   +G AL+  YSK G+M 
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMT 740

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  R++ +W  +I G A NG G  +L+    M++ GV  N+ +FVS+L  C 
Sbjct: 741 DARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACS 800

Query: 202 VVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
               +EEG R H + ++R+  ++  +     L+ +Y + G L+EA +V +    K +   
Sbjct: 801 SFSALEEGKRVHAEIVKRK--MQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEK-NVVT 857

Query: 261 WGALLNA 267
           W A++NA
Sbjct: 858 WNAMINA 864



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 123/229 (53%), Gaps = 3/229 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   TA+ +   +CGDV  A++  +   +RD + +NA++A  AQ G   EA   ++ M+
Sbjct: 318 DIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMR 377

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V +N  + +SVL+AC+   AL  G   H +I        V +G +L+ MY++CG++ 
Sbjct: 378 SDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLP 437

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F  M +R++ +W ++I G A      ++++L+  M+  GV+P  VTF+ +L  C 
Sbjct: 438 RARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACT 497

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
                 +G+  H D +R   GI+        L+++Y R G + EA +V 
Sbjct: 498 NSSAYSDGKMIHEDILRS--GIKSNGHLANALMNMYRRCGSIMEAQNVF 544



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 2/253 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           K+ +  ++ D   Q ++++   KC D+  AR++F  +  RD +++N ML  YAQ     E
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEE 267

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
            + LF  M    +  ++V+ +++L A T    LD+G+  H       L   + +GTAL  
Sbjct: 268 CIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALAT 327

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           M+ +CG++  A        +R+V  + ++I  LA +G  E++ E +  M+  GV  N  T
Sbjct: 328 MFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTT 387

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           ++SVL  C     +  G E   S   E G    ++    L+ +Y R G L  A ++ N M
Sbjct: 388 YLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTM 446

Query: 253 PMKPHAGAWGALL 265
           P K    +W A++
Sbjct: 447 P-KRDLISWNAII 458



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 104/190 (54%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD+     +I+   KC  V  A ++F +MP RD I+WN++++ YAQ G  ++A  LF  M
Sbjct: 115 PDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 174

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q      ++++ +S+L+AC     L+ G+  H  I     +    +  +L++MY KC ++
Sbjct: 175 QTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDL 234

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F G+  R+V ++ +++G  A     E+ + LF  M   G+ P++VT++++L   
Sbjct: 235 PSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAF 294

Query: 201 CVVGLVEEGR 210
               +++EG+
Sbjct: 295 TTPSMLDEGK 304



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 5/184 (2%)

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G  RE L   +  Q    + N  + V ++  CT   +L + +  H  +    +   + L 
Sbjct: 63  GSEREDLS--NAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLS 120

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
             L++MY KC +++ A   F  M  R+V +W S+I   A  G  +K+ +LF  M+ AG  
Sbjct: 121 NLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI 180

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P+++T++S+L  CC    +E G++ H   +   Y  +P +++   L+++YG+   L  A 
Sbjct: 181 PSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPSAR 238

Query: 247 DVIN 250
            V +
Sbjct: 239 QVFS 242


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/453 (45%), Positives = 296/453 (65%), Gaps = 3/453 (0%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G+C K    I +P V   TA+ +  ++  ++DLAR++FDE  E+   AWNAM++GYAQ G
Sbjct: 329 GFCVKS-GTILQPSV--STALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSG 385

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            +  A+ LF  M   +   N V++ S+LSAC  LGAL  G+  H  I+   L+  + + T
Sbjct: 386 LTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVST 445

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL+DMY+KCGN+++A   F    E+N  TW ++I G  ++G G+++L+LF+ M   G +P
Sbjct: 446 ALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQP 505

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           + VTF+SVL  C   GLV EG E F +M  +Y IEP  EHY C+VD+ GRAG+L++AL+ 
Sbjct: 506 SSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEF 565

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I KMP++P    WG LL AC ++K+T +  +AS +L EL+  N G YVLLSNIY+  +N+
Sbjct: 566 IRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNF 625

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
            +  +VR+ +K + + K PGC++IEV+   H F  GD +H +   I   L E++ +++  
Sbjct: 626 PKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREM 685

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GY + T   ++D+EEEEKE     HSEK+AIAFGLI+ + G  IRI+KNLRVC DCH  T
Sbjct: 686 GYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAAT 745

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K ISK+  R I+VRD NRFHHFK+G CSC  YW
Sbjct: 746 KFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 150/333 (45%), Gaps = 26/333 (7%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG   +   V DG  + ++   +A++    K   V  ARK+FD+MP+RD + WN M+ G 
Sbjct: 121 LGMCLHAHAVVDGF-DSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGL 179

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            +     +++ +F  M    V+L+  ++ +VL A   +  +  G        +       
Sbjct: 180 VRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDD 239

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            + T L+ ++SKC +++ A   F  +++ ++ ++ ++I G + NG  E +++ F  +  +
Sbjct: 240 YVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVS 299

Query: 185 GVRPNEVTFVSVLR----------GCCVVGL-VEEGREHFDSMRREYGIEPWLEHYGCLV 233
           G R +  T V ++            CC+ G  V+ G            ++P +     L 
Sbjct: 300 GQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTI----------LQPSVS--TALT 347

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE-TKNH 292
            +Y R   +D A  + ++   K  A AW A+++       TEM     ++++  E T N 
Sbjct: 348 TIYSRLNEIDLARQLFDESSEKTVA-AWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNP 406

Query: 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
                + +  A+        +V Q++K+K +++
Sbjct: 407 VTITSILSACAQLGALSFGKSVHQLIKSKNLEQ 439


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 310/461 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +     +F+ +   ++V  TAM++  +K G ++ AR +F++M ++D + W+AM
Sbjct: 267 MYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAM 326

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+    +EAL+LF+ MQ   +K ++V+M+SV++AC HLGALDQ +W H+++++N  
Sbjct: 327 ISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGF 386

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL++MY+KCG++ +A   F  M  +NV +WT +I   AM+G    +L  F  
Sbjct: 387 GGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQ 446

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+   + PN +TFV VL  C   GLVEEGR+ F SM  E+ I P   HYGC+VDL+GRA 
Sbjct: 447 MEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRAN 506

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EAL+++  MP+ P+   WG+L+ ACR++   E+GE A+++L+EL+  + GA+V LSN
Sbjct: 507 LLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSN 566

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+++ W+ V  VR++MK KG+ K  GCS  E++ E+HEF   D +H   +EI   L E
Sbjct: 567 IYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYE 626

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  +LKL GY  NT  ++ D+EEEEK++ +  HSEK+A+ +GL+    G  IRI+KNLRV
Sbjct: 627 VVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRV 686

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+ SKV+ REI+VRDR RFHH+K+G CSCK YW
Sbjct: 687 CEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 147/284 (51%), Gaps = 35/284 (12%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D   QT ++   A CG +  AR MFD+M  RD + W+ M+ GY Q G   +AL LF  
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+ ++V+ +E+ + +VLSAC   G L  G+  H +I  N + +   L +ALV MY+ CG+
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273

Query: 140 MNKAMDFFWGMKERNVYT-------------------------------WTSVIGGLAMN 168
           M+ A++ F  M  +N+                                 W+++I G A +
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLE 227
            + +++L LF+ M+  G++P++VT +SV+  C  +G +++ +  H    +  +G    L 
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFG--GALP 391

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
               L+++Y + G L+ A  + +KMP K +  +W  +++A  M+
Sbjct: 392 INNALIEMYAKCGSLERARRIFDKMPRK-NVISWTCMISAFAMH 434


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/461 (45%), Positives = 300/461 (65%), Gaps = 1/461 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G      +VFD +    VV   ++ +   + GDV+ A ++F+++PER+ + WN M
Sbjct: 377 MYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTM 436

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G  Q     +A+ LF  MQ   +K + V+M+ + SAC +LGA +  +W H YIE+N +
Sbjct: 437 ISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGI 496

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L TALVDM+++CG+   AM  F  M ER+V  WT+ IG +AM G GE +  LF+ 
Sbjct: 497 PCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQ 556

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   GV+P+ V FV VL  C   G VE+G  H  S+  ++GI P +EHYGC+VDL GRAG
Sbjct: 557 MLIQGVKPDVVLFVQVLTACSHGGQVEQGL-HIFSLMEDHGISPQIEHYGCMVDLLGRAG 615

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA D+I  MPM+P+   WG+LL ACR++KN EM   A+ ++ EL  +  G +VLLSN
Sbjct: 616 LLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSN 675

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  W  V  VR  ++ KGV+K+PG S ++V+  +HEF +GDE+HP    I +ML E
Sbjct: 676 IYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQE 735

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++ R   AG++ + + V+ D++E+EKE  L +HSEK+AIAFGLI+    +PIR+VKNLR+
Sbjct: 736 MNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRM 795

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   KM S ++NREIIVRD NRFH F++G CSC  YW
Sbjct: 796 CSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 2/245 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV  Q  +I   A+CG +D   K+F+ M ER+ ++W +++ GYA+  + +EA+ LF  
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    ++ + V+MV V+SAC  L  LD G     YI    LK+   +  ALVDMY KCG 
Sbjct: 223 MVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGA 282

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F    +RN+  + +++   A  G   ++L +   M Q G RP+ VT +S +  
Sbjct: 283 IDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
              +  +  G+     + R  G+E W      ++D+Y + G+ + A  V + M  K    
Sbjct: 343 SAQLVDLFYGKVCHGYVIRN-GLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVV- 400

Query: 260 AWGAL 264
           +W +L
Sbjct: 401 SWNSL 405



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 33/280 (11%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A++    KCG +D A+++FDE  +R+ + +N +L+ YA+ G +REAL +   M     +
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 330

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC--------- 137
            + V+M+S +SA   L  L  G+  H Y+ RN L+   ++G  ++DMY KC         
Sbjct: 331 PDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRV 390

Query: 138 ----------------------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
                                 G++  A + F  + ERN   W ++I GL      E ++
Sbjct: 391 FDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAI 450

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           ELF  M+  G++ + VT + +   C  +G  E  +     + +  GI   +     LVD+
Sbjct: 451 ELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKN-GIPCDMRLNTALVDM 509

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           + R G    A+ V NKM  +    AW A +    M  N E
Sbjct: 510 FARCGDPQSAMQVFNKMTER-DVSAWTAAIGTMAMEGNGE 548



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 12/245 (4%)

Query: 10  YCQKVFDGIHE-PDVVCQTAMISACAKCGD---VDLARKMFDEMPE--RDPIAW---NAM 60
           +CQ   +G+ + P  +  T +++A A+      +D ARK F+   E  R   A    N++
Sbjct: 45  HCQITKNGLDQIPSTL--TKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSL 102

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY+  G  REA+ L+  M +  V  N  +   VLS CT + A  +G   H  + +  L
Sbjct: 103 IRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGL 162

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  V +   L+  Y++CG+M+     F GM ERNV +WTS+I G A     ++++ LF  
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +AG+RP+ VT V V+  C  +  ++ G E   +   E G++        LVD+Y + G
Sbjct: 223 MVEAGIRPSSVTMVCVISACAKLRDLDMG-ERVCAYIGELGLKLNKVMVNALVDMYMKCG 281

Query: 241 RLDEA 245
            +D A
Sbjct: 282 AIDAA 286



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 10/170 (5%)

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN---MNKAMDFFWGMKER-----NV 155
            L+Q +  H  I +N L    +  T LV+  ++  +   ++ A   F   KE       +
Sbjct: 37  TLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDAL 96

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
           +   S+I G +  G G +++ L+  M   GV PN  TF  VL GC  +    EG +   S
Sbjct: 97  FMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGS 156

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           + +  G+E  +    CL+  Y   G +D    V   M  + +  +W +L+
Sbjct: 157 VVK-MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER-NVVSWTSLI 204


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/434 (47%), Positives = 288/434 (66%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I+   KCG +  ARK+F ++P RD + W AM+ GYAQ G   EA+ LF  MQ   +K 
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKP 397

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           ++++  S L++C+    L +G+  H  +      + V L +ALV MY+KCG+M+ A   F
Sbjct: 398 DKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVF 457

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M ERNV  WT++I G A +G   ++LE F  MK+ G++P++VTF SVL  C  VGLVE
Sbjct: 458 NQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVE 517

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EGR+HF SM  +YGI+P +EHY C VDL GRAG L+EA +VI  MP +P    WGALL+A
Sbjct: 518 EGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSA 577

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR++ + E GE A+  +++L+  + GAYV LSNIYA +  ++    VRQ+M+ + V K P
Sbjct: 578 CRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEP 637

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           G S IEVD +VH F   D++HP   EI   LG+++ ++K  GYV +T  V++D++EE+K 
Sbjct: 638 GQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKV 697

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
            TLC HSE++AI +GL+    G PIRIVKNLRVC DCH  +K ISKV  REII RD +RF
Sbjct: 698 QTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRF 757

Query: 448 HHFKEGKCSCKGYW 461
           HHF +G CSC  +W
Sbjct: 758 HHFVDGVCSCGDFW 771



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 145/250 (58%), Gaps = 6/250 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EP V   T+++   AKCGD+  A+ +FD++PE++ + W  ++AGYAQ G+   AL L   
Sbjct: 231 EPRV--GTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEK 288

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ  +V  N+++  S+L  CT   AL+ G+  H YI ++     + +  AL+ MY KCG 
Sbjct: 289 MQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGG 348

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  +  R+V TWT+++ G A  G  +++++LF  M+Q G++P+++TF S L  
Sbjct: 349 LKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTS 408

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     ++EG+  H   +   Y ++ +L+    LV +Y + G +D+A  V N+M  + + 
Sbjct: 409 CSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDARLVFNQMSER-NV 465

Query: 259 GAWGALLNAC 268
            AW A++  C
Sbjct: 466 VAWTAMITGC 475



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 143/249 (57%), Gaps = 4/249 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P+   +  ++S  AKCG +  AR++FD + +R+ ++W AM+  +    ++ EA   +  
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++   K ++V+ VS+L+A T+   L  G+  H+ I +  L++   +GT+LV MY+KCG+
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGD 247

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++KA   F  + E+NV TWT +I G A  G  + +LEL   M+QA V PN++T+ S+L+G
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQG 307

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     +E G++ H   ++  YG E W+     L+ +Y + G L EA  +   +P +   
Sbjct: 308 CTTPLALEHGKKVHRYIIQSGYGREIWV--VNALITMYCKCGGLKEARKLFGDLPHR-DV 364

Query: 259 GAWGALLNA 267
             W A++  
Sbjct: 365 VTWTAMVTG 373



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 87/141 (61%), Gaps = 3/141 (2%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q++    +  DV  Q+A++S  AKCG +D AR +F++M ER+ +AW AM+ G AQ G+ R
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCR 482

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--WAHVYIERNRLKMTVTLGTA 129
           EAL  F  M+   +K ++V+  SVLSACTH+G +++GR  +  +Y++   +K  V   + 
Sbjct: 483 EALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYG-IKPMVEHYSC 541

Query: 130 LVDMYSKCGNMNKAMDFFWGM 150
            VD+  + G++ +A +    M
Sbjct: 542 FVDLLGRAGHLEEAENVILTM 562



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 108/204 (52%), Gaps = 3/204 (1%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
           D +A +  ++   + G+ +EAL + + M +   ++       +L  C  L +L+QGR  H
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
             I ++ ++    L   L+ MY+KCG++  A   F G+++RN+ +WT++I          
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC 231
           ++ + +  MK AG +P++VTFVS+L       L++ G++ H +  +    +EP +     
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TS 237

Query: 232 LVDLYGRAGRLDEALDVINKMPMK 255
           LV +Y + G + +A  + +K+P K
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLPEK 261


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/469 (46%), Positives = 306/469 (65%), Gaps = 21/469 (4%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           L + Q  FD         Q ++++  AK G + ++R +FD + E D   WN +L  YA+ 
Sbjct: 278 LKFLQPPFDNF------VQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARS 331

Query: 68  GK-------------SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
                          S E+L+LF  MQ+  ++ NEV++V+++SAC++LGA+ QG W H +
Sbjct: 332 SSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCF 391

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGE 172
           + RN++KM   +GTA VDMYSKCG +N A   F  M E  R+ + +T++IGG A++G G 
Sbjct: 392 VLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGN 451

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           ++LEL+  MK  G+ P+  TFV  +  C  VGLVEEG E F SM+  +G+EP LEHYGCL
Sbjct: 452 QALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCL 511

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292
           +DL GRAGRL EA + +  MPMKP+A  W +LL A R++ N  +GE+A  KL+ELE +  
Sbjct: 512 IDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETS 571

Query: 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN 352
           G YVLLSN+YA     + V  VR++MK  GV KLPG S++E+   +HEF  GD +HP   
Sbjct: 572 GNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSK 631

Query: 353 EIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPI 412
           EI + + EI+ RL+  G+ A T+  ++D+EEE+KE  L  HSE++AIAF LI+    + I
Sbjct: 632 EIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAI 691

Query: 413 RIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RI+KNLRVC DCH  TK+IS  ++REIIVRDRNRFHHFK+G CSC  YW
Sbjct: 692 RIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/441 (46%), Positives = 299/441 (67%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  Q A+I+  AK  D+ +A+K+FD MP+R  IAWN++++GY Q G  +E++ LFHLM 
Sbjct: 223 DMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMM 282

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + +  ++VS+LS+C+ LGALD G W H Y + N   + V LGT+L++MY++CGN++
Sbjct: 283 ESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 342

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA + F  MKERNV TWT++I G  M+G G +++ELF+ M+  G RPN +TFV+VL  C 
Sbjct: 343 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 402

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK-MPMKPHAGA 260
             GL+++GR  F SM+  YG+ P +EH  C+VD++GRAG L++A   I K +P +P    
Sbjct: 403 HSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAV 462

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W ++L ACRM++N ++G   +  ++ +E +N G YV+LSNIYA +   DRV  VR +M  
Sbjct: 463 WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTR 522

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + +KK  G S IE++R+ + F  GD++HP+ N I   L E+  R   +GYV     +M+D
Sbjct: 523 RRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHD 582

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EEEE++  L  HSEK+A+AFGL+   +G  IRIVKNLR+C DCH   K IS + +REII
Sbjct: 583 LEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREII 642

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD+ RFHHFK+G CSC  YW
Sbjct: 643 VRDKFRFHHFKDGSCSCLDYW 663



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H +I  + L  + +L T L+ +    G++  A   F  +   + + + S++   +  G  
Sbjct: 111 HAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFS 170

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYG 230
             ++  +  M  +G   +  TF SV++ C  +  +  G+E H   M   YG + +++   
Sbjct: 171 IDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ--A 228

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            L+ LY +A  +  A  V + MP +    AW +L++ 
Sbjct: 229 ALIALYAKASDMKVAKKVFDAMPQRTII-AWNSLISG 264


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/464 (46%), Positives = 303/464 (65%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +G  QKVF    + D+     +I+A    G++ LA+++FD M ERD ++W+ +
Sbjct: 159 MYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTI 218

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY Q G   EAL  FH M     K NE ++VS L+AC++L ALDQG+W H YI +  +
Sbjct: 219 IAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEI 278

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           KM   L  +++DMY+KCG +  A   F+  K ++ V+ W ++IGG AM+G   +++ +F 
Sbjct: 279 KMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFE 338

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK   + PN+VTF+++L  C    +VEEG+ +F  M  +Y I P +EHYGC+VDL  R+
Sbjct: 339 QMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRS 398

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I+ MPM P    WGALLNACR+YK+ E G    R +  ++  + G +VLLS
Sbjct: 399 GLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLS 458

Query: 300 NIYAESKNWDRVINVRQIMK-AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           NIY+ S  W+    +R+  + ++  KK+PGCS IE+    H+F  GD++HP+  EI   L
Sbjct: 459 NIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFL 518

Query: 359 GEISRRLKLAGYVANTNPVMYDI-EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            E++ +LK AGYV     +++DI +EE+KE  L  HSEK+AIAFGL++   G PIRIVKN
Sbjct: 519 DEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKN 578

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH  TK ISKV+NR IIVRDR R+HHF++G CSCK YW
Sbjct: 579 LRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 125/278 (44%), Gaps = 17/278 (6%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACA----KCGDVDLARKMFDEMPERDPIAWN 58
           A    L Y  K+FD I +PD+     MI A +     C +  +  +   +     P  ++
Sbjct: 58  AACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYS 117

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
            + A ++ CG     +     ++IH VK+   + V V++A   +     G+W  V   + 
Sbjct: 118 FVFA-FSACGNGL-GVQEGEQVRIHAVKVGLENNVFVVNALIGM----YGKWGLVGESQK 171

Query: 119 RLKMTVTLG----TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
             +  V         L+  Y   GNM+ A + F GM+ER+V +W+++I G    G   ++
Sbjct: 172 VFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEA 231

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLV 233
           L+ F  M Q G +PNE T VS L  C  +  +++G+  H    + E  +   L     ++
Sbjct: 232 LDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERL--LASII 289

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           D+Y + G ++ A  V  +  +K     W A++    M+
Sbjct: 290 DMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMH 327


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/441 (46%), Positives = 299/441 (67%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  Q A+I+  AK  D+ +A+K+FD MP+R  IAWN++++GY Q G  +E++ LFHLM 
Sbjct: 159 DMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMM 218

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + +  ++VS+LS+C+ LGALD G W H Y + N   + V LGT+L++MY++CGN++
Sbjct: 219 ESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 278

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA + F  MKERNV TWT++I G  M+G G +++ELF+ M+  G RPN +TFV+VL  C 
Sbjct: 279 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 338

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK-MPMKPHAGA 260
             GL+++GR  F SM+  YG+ P +EH  C+VD++GRAG L++A   I K +P +P    
Sbjct: 339 HSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAV 398

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W ++L ACRM++N ++G   +  ++ +E +N G YV+LSNIYA +   DRV  VR +M  
Sbjct: 399 WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTR 458

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + +KK  G S IE++R+ + F  GD++HP+ N I   L E+  R   +GYV     +M+D
Sbjct: 459 RRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHD 518

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EEEE++  L  HSEK+A+AFGL+   +G  IRIVKNLR+C DCH   K IS + +REII
Sbjct: 519 LEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREII 578

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD+ RFHHFK+G CSC  YW
Sbjct: 579 VRDKFRFHHFKDGSCSCLDYW 599



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H +I  + L  + +L T L+ +    G++  A   F  +   + + + S++   +  G  
Sbjct: 47  HAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFS 106

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYG 230
             ++  +  M  +G   +  TF SV++ C  +  +  G+E H   M   YG + +++   
Sbjct: 107 IDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ--A 164

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            L+ LY +A  +  A  V + MP +    AW +L++ 
Sbjct: 165 ALIALYAKASDMKVAKKVFDAMPQRT-IIAWNSLISG 200


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/445 (46%), Positives = 294/445 (66%), Gaps = 1/445 (0%)

Query: 17   GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
            G+     VC  A++    KC +++ AR +FD+M ERD + W  M+ GYA+CG + E+L L
Sbjct: 866  GLDLDHFVC-AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVL 924

Query: 77   FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            F  M+   V  ++V+MV+V+ AC  LGA+ + R    YI+R + ++ V LGTA++DM++K
Sbjct: 925  FDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 984

Query: 137  CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            CG +  A + F  M+E+NV +W+++I     +G G K+L+LF +M ++G+ PN++T VS+
Sbjct: 985  CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 1044

Query: 197  LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            L  C   GLVEEG   F  M  +Y +   ++HY C+VDL GRAGRLDEAL +I  M  + 
Sbjct: 1045 LYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEK 1104

Query: 257  HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
              G WGA L ACR +K+  + E A+  L+EL+ +N G Y+LLSNIYA +  W+ V  +R 
Sbjct: 1105 DEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRD 1164

Query: 317  IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
            +M  + +KK+PG + IEVD + H+F  GD THPR  EI  ML  +  +L+L GYV +TN 
Sbjct: 1165 LMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 1224

Query: 377  VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            V++D++EE K   L  HSEK+AIAFGLI+  E  PIRI+KNLRVC DCH   K++S +  
Sbjct: 1225 VLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITG 1284

Query: 437  REIIVRDRNRFHHFKEGKCSCKGYW 461
            R IIVRD NRFHHFKEG CSC  YW
Sbjct: 1285 RVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/403 (45%), Positives = 266/403 (66%), Gaps = 1/403 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+     VC  A++    KC +++ AR +FD+M ERD + W  M+ GYA+CGK+ E+L L
Sbjct: 190 GLDLDHFVC-AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL 248

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M+   V  ++V+MV+V+ AC  LGA+ + R    YI+R + ++ V LGTA++DMY+K
Sbjct: 249 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 308

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A + F  M+E+NV +W+++I     +G G K+L+LF +M  +G+ P+++T  S+
Sbjct: 309 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASL 368

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLVEEG   F SM  +Y +   ++HY C+VDL GRAGRLDEAL +I  M ++ 
Sbjct: 369 LYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEK 428

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
             G WGA L ACR +K+  + E A+  L+EL+++N G YVLLSNIYA +  W+ V  +R 
Sbjct: 429 DEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRD 488

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  + +KK PG + IEVD + H+F  GD THPR  EI  ML  +S +L+L GYV +TN 
Sbjct: 489 LMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNF 548

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           V++D++EE K   L  HSEK+AIAFGLI+  E  PIRI+KNLR
Sbjct: 549 VLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +D A  +FD M  RD ++W+ M+ G+A+ G        F  +     + +  ++  V+ A
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C  L  L  GR  H  + +  L +   +  ALVDMY KC  +  A   F  M+ER++ TW
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 229

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM-R 217
           T +IGG A  G   +SL LF  M++ GV P++V  V+V+  C  +G + + R   D + R
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 289

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +++ ++  L     ++D+Y + G ++ A ++ ++M  K +  +W A++ A
Sbjct: 290 KKFQLDVILG--TAMIDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAA 336



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 39   VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
            +D A  +FD M  RD ++W+ M+ G+A+ G        F  +     + +  ++  V+ A
Sbjct: 786  LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRA 845

Query: 99   CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
            C  L  L  GR  H  + +  L +   +  ALVDMY KC  +  A   F  M ER++ TW
Sbjct: 846  CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTW 905

Query: 159  TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM-R 217
            T +IGG A  G   +SL LF  M++ GV P++V  V+V+  C  +G + + R   D + R
Sbjct: 906  TVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 965

Query: 218  REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            +++ ++  L     ++D++ + G ++ A ++ ++M  K +  +W A++ A
Sbjct: 966  KKFQLDVILG--TAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAA 1012



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           FH +Q    +LN    +S L  C +L    Q R  H     + +   + +   L+  YS 
Sbjct: 54  FHFLQ----RLNPKFYISALVNCRNL---TQVRQVHAQASVHGMLENIVVANKLIYFYSY 106

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
              ++ A   F GM  R+  +W+ ++GG A  G        F  + + G RP+  T   V
Sbjct: 107 YRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFV 166

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKM 252
           +R C  +  ++ GR     +  ++G++  L+H+ C  LVD+Y +   +++A  + +KM
Sbjct: 167 IRACRDLKNLQMGRL-IHHIVYKFGLD--LDHFVCAALVDMYVKCREIEDARFLFDKM 221



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           L Q R  H     + +   + +   LV  YS    ++ A   F GM  R+  +W+ ++GG
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
            A  G        F  + + G RP+  T   V+R C  +  ++ GR     +  ++G++ 
Sbjct: 811 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRL-IHHIVYKFGLD- 868

Query: 225 WLEHYGC--LVDLYGRAGRLDEALDVINKM 252
            L+H+ C  LVD+YG+   +++A  + +KM
Sbjct: 869 -LDHFVCAALVDMYGKCREIEDARFLFDKM 897



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+   +++FD + E +V+  +AMI+A                            
Sbjct: 305 MYAKCGCVESAREIFDRMEEKNVISWSAMIAA---------------------------- 336

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
              Y   G+ R+AL LF +M    +  +++++ S+L AC+H G +++G R+     E   
Sbjct: 337 ---YGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYS 393

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           ++  V   T +VD+  + G +++A+     M  E++   W + +G 
Sbjct: 394 VRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGA 439


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/451 (47%), Positives = 305/451 (67%), Gaps = 5/451 (1%)

Query: 12   QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            +K FDG     +     ++ A AKCG   +++K+FD M E+D I+WN+M+A YAQ G S 
Sbjct: 1279 KKGFDG----SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334

Query: 72   EALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL +FH M  H  V+ N V++ +VL AC H GAL  G+  H  + +  L+  V +GT++
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 1394

Query: 131  VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
            +DMY KCG +  A   F  MKE+NV +WT+++ G  M+G  +++L++F  M +AGV+PN 
Sbjct: 1395 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 1454

Query: 191  VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            +TFVSVL  C   GLVEEG   F++M+ +Y IEP +EHYGC+VDL+GRAG L+EA ++I 
Sbjct: 1455 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 1514

Query: 251  KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            +M MKP    WG+LL ACR++KN ++GE+A++KL EL+  N G YVLLSN+YA++  W  
Sbjct: 1515 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 1574

Query: 311  VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
            V  +R +MK + + K PG S++E+   VH F  GD+ HP +  I   L +++  L+  GY
Sbjct: 1575 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGY 1634

Query: 371  VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
            V N   V++D++EEEKE  L  HSEK+A+AFG+++   G  I I+KNLRVC DCH V K+
Sbjct: 1635 VPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKL 1694

Query: 431  ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ISK+ +R+ +VRD  RFHHFK+G CSC  YW
Sbjct: 1695 ISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 155/246 (63%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            Y + G   +  KVF+ +   +VV  T +IS    CGD+  AR++FDE+P ++ ++W AM
Sbjct: 169 FYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAM 228

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY +  +  EAL LF  MQ  ++  NE +MVS++ ACT +G L  GR  H Y  +N +
Sbjct: 229 INGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCI 288

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++ V LGTAL+DMYSKCG++  A++ F  M  +++ TW S+I  L ++G G+++L LFS 
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE 348

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++  V+P+ +TF+ VL  C  +  V+EG  +F  M + YGI P  EHY C+ +LY R+ 
Sbjct: 349 MERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSN 408

Query: 241 RLDEAL 246
            LDEA 
Sbjct: 409 NLDEAF 414



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 52/304 (17%)

Query: 12   QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            Q+ F    E D+   +A+I   +KCG +  AR +FDE+P R+ ++W +M+ GY Q  ++ 
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 1225

Query: 72   EALHLF--------HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
             AL LF         +   ++V L+ V MVSVLSAC+ +         H ++ +     +
Sbjct: 1226 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 1285

Query: 124  VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMK 182
            + +G  L+D Y+KCG    +   F  M+E++  +W S+I   A +G   ++LE+F  +++
Sbjct: 1286 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 1345

Query: 183  QAGVRPNEVTFVSVLRGC-----------------------------------CVVGLVE 207
              GVR N VT  +VL  C                                   C  G VE
Sbjct: 1346 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 1405

Query: 208  EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGAL 264
              ++ FD M +E  ++ W      +V  YG  GR  EALD+  KM    +KP+   + ++
Sbjct: 1406 MAKKTFDRM-KEKNVKSWT----AMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 1460

Query: 265  LNAC 268
            L AC
Sbjct: 1461 LAAC 1464



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 44/290 (15%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G +  A  +F ++       WN ++      G S +AL L+  M    +  ++ +   V+
Sbjct: 73  GRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVI 132

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            ACT+  ++D G+  H  + +      V +   L+D Y KCG+   A+  F  M+ RNV 
Sbjct: 133 KACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVV 192

Query: 157 TWTSVIGGL-------------------------AM------NGAGEKSLELFSLMKQAG 185
           +WT+VI GL                         AM      N   E++LELF  M+   
Sbjct: 193 SWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE---HYG-CLVDLYGRAGR 241
           + PNE T VS+++ C  +G++  GR   D     Y I+  +E   + G  L+D+Y + G 
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           + +A++V   MP K     W +++ +  ++    +G+ A     E+E  N
Sbjct: 308 IKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSEMERVN 353



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 13/212 (6%)

Query: 40   DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
            +LA   +  + + +  +WN+++A  A+ G S EAL  F  ++   +     S    + +C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 100  THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
            + L  L  GR +H        +  + + +AL+DMYSKCG +  A   F  +  RNV +WT
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 1212

Query: 160  SVIGGLAMNGAGEKSLELFSLMKQA--------GVRPNEVTFVSVLRGCCVVG--LVEEG 209
            S+I G   N   + +L LF    +          V  + V  VSVL  C  V    + EG
Sbjct: 1213 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 1272

Query: 210  REHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
               F   +   G +  +     L+D Y + G+
Sbjct: 1273 VHGFVVKK---GFDGSIGVGNTLMDAYAKCGQ 1301



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 9/217 (4%)

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           R  H  I R+ L     L   L+ +YS  G +  A+  F+ ++    +TW  +I    +N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G  E++L L+  M   G+  ++ TF  V++ C     ++ G+    S+ + YG    +  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDVFV 162

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGEL--ASRKLVE 286
              L+D Y + G    AL V  KM ++ +  +W  +++          G+L  A R   E
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGL-----ISCGDLQEARRIFDE 216

Query: 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           + +KN  ++  + N Y  ++  +  + + + M+A+ +
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 141  NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            N A  F+  + + NV++W SVI  LA  G   ++L  FS +++ G+ P   +F   ++ C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 201  CVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
              +  +  GR  H  +    +G E  L     L+D+Y + G+L +A  + +++P++ +  
Sbjct: 1153 SALCDLVSGRMSHQQAF--VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVV 1209

Query: 260  AWGALLNACRMYKNTEMGELASRKLVELETK 290
            +W +++      +  +   L  +  +E ET+
Sbjct: 1210 SWTSMITGYVQNEQADNALLLFKDFLEEETE 1240


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/462 (45%), Positives = 303/462 (65%), Gaps = 2/462 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +G  +KVFD + E DV+  T+++ A  + GD+  A ++F   P +D +AW AM+
Sbjct: 187 YVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMV 246

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GYAQ     +AL +F  M    + ++EVS+   +SAC  LGAL +  W     ER    
Sbjct: 247 TGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFG 306

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-L 180
             V +G+ LVDMY+KCG +++A   F+GM+E+NVYT++S+I GLA +G   +++ LF  +
Sbjct: 307 NNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEM 366

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           + +A V PN VTF+ VL  C   G+V EGR +F  M+ +YGI P  +HY C+VDL GRAG
Sbjct: 367 VNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAG 426

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            +DEALD++  M + PH G WGALL ACR++  +E+ ++ +  L +LE ++ G YVLLSN
Sbjct: 427 LVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSN 486

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE-VDREVHEFFAGDETHPRYNEIEVMLG 359
           I A +  W+ V  VR +M+ + +KK P  S+ E  D  VH+FFAGD  HPR +EI+  L 
Sbjct: 487 ILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALL 546

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  +LKL GYV   + ++YD+ +EEKE  L  HSEK+A++FGL++L  G  IRI+KNLR
Sbjct: 547 ELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLR 606

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH   +++S+V + EIIVRD  RFHHFK G+CSC G+W
Sbjct: 607 ICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/452 (47%), Positives = 294/452 (65%), Gaps = 1/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + + V DG+   DV    A+I+  +K G +  AR++FD MP+RD ++W A++ GYA CG+
Sbjct: 370 HARAVKDGL-VSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQ 428

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             E+   F  M    V+ N+++ + VL AC++  AL  G+  H  + +  +   + +  A
Sbjct: 429 VVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANA 488

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ MY KCG++  A+    GM  R+V TW ++IGGLA NG G ++L+ F +MK   +RPN
Sbjct: 489 LMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPN 548

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
             TFV+V+  C V  LVEEGR  F SMR++YGI P  +HY C+VD+  RAG L EA DVI
Sbjct: 549 ATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVI 608

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
             MP KP A  WGALL ACR + N E+GE A+ + ++LE +N G YV LS IYA +  W 
Sbjct: 609 LTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWR 668

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  +R++MK +GVKK PG S IEV  EVH F AGD++HPR  EI   L  +++++K  G
Sbjct: 669 DVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLG 728

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +T  VM+D+++E KE  +C HSEK+AIA+GLIS     PIR+ KNLRVC DCH  TK
Sbjct: 729 YVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATK 788

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ISK+  REII RD +RFHHFK G+CSC  YW
Sbjct: 789 FISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 139/247 (56%), Gaps = 4/247 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P+V     ++     CG V+ AR++FD+   +  ++WN M++GYA  G  +EA +LF L
Sbjct: 76  KPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTL 135

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   ++ ++ + VS+LSAC+   AL+ GR  HV +    L    T+G AL+ MY+KCG+
Sbjct: 136 MQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGS 195

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M  R+  +WT++ G  A +G  ++SL+ +  M Q GVRP+ +T+++VL  
Sbjct: 196 VRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSA 255

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  +E+G++ H   +  E+  +  +     L  +Y + G + +A +V   +P +   
Sbjct: 256 CGSLAALEKGKQIHAQIVESEHHSDVRVS--TALTKMYIKCGAVKDAREVFECLPNR-DV 312

Query: 259 GAWGALL 265
            AW  ++
Sbjct: 313 IAWNTMI 319



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 135/239 (56%), Gaps = 4/239 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+IS  AKCG V  AR++FD M  RD ++W  +   YA+ G ++E+L  +H M    V+ 
Sbjct: 185 ALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRP 244

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           + ++ ++VLSAC  L AL++G+  H  I  +     V + TAL  MY KCG +  A + F
Sbjct: 245 SRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVF 304

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +  R+V  W ++IGGL  +G  E++  +F  M +  V P+ VT++++L  C   G + 
Sbjct: 305 ECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLA 364

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            G+E H  +++   G+   +     L+++Y +AG + +A  V ++MP K    +W AL+
Sbjct: 365 CGKEIHARAVKD--GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALV 420



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 130/244 (53%), Gaps = 3/244 (1%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++ +  H  DV   TA+     KCG V  AR++F+ +P RD IAWN M+ G    G+  E
Sbjct: 271 QIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEE 330

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A  +FH M    V  + V+ +++LSAC   G L  G+  H    ++ L   V  G AL++
Sbjct: 331 AHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALIN 390

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MYSK G+M  A   F  M +R+V +WT+++GG A  G   +S   F  M Q GV  N++T
Sbjct: 391 MYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKIT 450

Query: 193 FVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           ++ VL+ C     ++ G+E H + ++   GI   L     L+ +Y + G +++A+ V   
Sbjct: 451 YMCVLKACSNPVALKWGKEIHAEVVKA--GIFADLAVANALMSMYFKCGSVEDAIRVSEG 508

Query: 252 MPMK 255
           M  +
Sbjct: 509 MSTR 512



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 4/183 (2%)

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           +++    V +L +C     L  G+  H +I R  +K  V +   L+ +Y  CG++N+A  
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARR 100

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F     ++V +W  +I G A  G G+++  LF+LM+Q G+ P++ TFVS+L  C     
Sbjct: 101 LFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAA 160

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  GRE H   M  E G+         L+ +Y + G + +A  V + M  +    +W  L
Sbjct: 161 LNWGREVHVRVM--EAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV-SWTTL 217

Query: 265 LNA 267
             A
Sbjct: 218 TGA 220


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/464 (45%), Positives = 305/464 (65%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   +KVFD +   DV+  T +ISA  K G+++ A ++FD +P +D +AW  M
Sbjct: 191 MYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVM 250

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G+AQ  K REA+  F  MQ   V+ +E++++ V+SAC  LGA     W     E++  
Sbjct: 251 VSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEF 310

Query: 121 --KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             K +V +G+AL+DMYSKCG++  A   F GMKERNVY+++S+I G AM+G    +++LF
Sbjct: 311 GGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLF 370

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M +  ++PN VTF+ VL  C   G+VE+G + F+ M + YGI+P  +HY C+VDL GR
Sbjct: 371 DEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGR 430

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL EA +++  MP++PH G WGALL ACR++K+ ++  +A+  L ELE    G Y+LL
Sbjct: 431 AGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILL 490

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDRE-VHEFFAGDETHPRYNEIEVM 357
           +NIYA    W+ V  VR++M+ +G++K P  S IE ++  VHEFF+GD THPR  EI+  
Sbjct: 491 ANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQA 550

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++  RL+  GY  + + V YD+ +E+K   L  HSEK+A+AFGLIS   G  IRIVKN
Sbjct: 551 LEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKN 610

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR+C DCH V    S++  REIIVRD  RFHHF +G CSC  +W
Sbjct: 611 LRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 103/242 (42%), Gaps = 33/242 (13%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
            +F+++   +P  +NA++ GY    + +E+   + LM+   V     +  ++  AC    
Sbjct: 101 SIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKM 160

Query: 104 ALDQGRWAH------------VYIERNRLKMTVTLG--------------------TALV 131
            +  GR  H            +++  + + M +  G                    T L+
Sbjct: 161 DVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELI 220

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
             Y K GNM  A + F G+  +++  WT ++ G A N    +++  F  M++ GV  +E+
Sbjct: 221 SAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEI 280

Query: 192 TFVSVLRGCCVVGLVEEGREHFD-SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T + V+  C  +G  +      D + + E+G +  +     L+D+Y + G + +A  V  
Sbjct: 281 TLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQ 340

Query: 251 KM 252
            M
Sbjct: 341 GM 342



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD--- 145
           E  +V+ L  C +L  + Q    H  I  N L  +  +   L+   +K   +N  +D   
Sbjct: 46  ESQIVTTLDGCKNLTQIKQ---VHARILLNGLDQSCYVLAKLIRTLTK---LNIPVDPYP 99

Query: 146 --FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  +   N + + ++I G  +    ++S E +SLM++ GV P   TF ++ + C   
Sbjct: 100 LSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAK 159

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
             V  GR+         G    L     ++D+Y + G L+    V ++MP +    +W  
Sbjct: 160 MDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNR-DVISWTE 218

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           L++A   Y  +   E A      L  K+  A+ ++ + +A++      I   + M+  GV
Sbjct: 219 LISA---YVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGV 275

Query: 324 K 324
           +
Sbjct: 276 E 276


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/494 (44%), Positives = 309/494 (62%), Gaps = 33/494 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVD-------------------- 40
           MYAE G  G  ++VFD + EP+VV   A+++A  +CGDV+                    
Sbjct: 147 MYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGM 206

Query: 41  -----------LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
                      LAR++F EMP RD ++W+ M+ G+A  G   EA   F  +   +++ NE
Sbjct: 207 LAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNE 266

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
           VS+  VLSAC   GA + G+  H ++E+       ++  AL+D YSKCGN+  A   F  
Sbjct: 267 VSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQN 326

Query: 150 MK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M   R++ +WTS+I GLAM+G GE++++LF  M+++GVRP+ +TF+S+L  C   GLVEE
Sbjct: 327 MPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEE 386

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G   F  M+  YGIEP +EHYGC+VDLYGRA RL +A + I +MP+ P+A  W  LL AC
Sbjct: 387 GCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGAC 446

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
            ++ N EM EL   +L E++  N G +VLLSN+YA +  W  V ++R+ M    +KK PG
Sbjct: 447 SIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPG 506

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYDIEEEEKE 387
            S+IE+D+ ++ F AG++ +    E    L EI  RL+  AGY      V++DIEEEEKE
Sbjct: 507 WSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKE 566

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
           D++ KHSEK+A AFG+  L +G  +RIVKNLRVC DCH V K+ISKV+  EIIVRDR+RF
Sbjct: 567 DSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRF 626

Query: 448 HHFKEGKCSCKGYW 461
           H FK+G CSC+ YW
Sbjct: 627 HSFKDGFCSCRDYW 640



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 104/268 (38%), Gaps = 14/268 (5%)

Query: 17  GIHEPDVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           G+H   +V    ++       D +  A ++F   P  D    N ++   +       +LH
Sbjct: 29  GLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLH 88

Query: 76  LF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
            F  L +   +  +  +    L A  +   L  G   H    R+     + +GT L+ MY
Sbjct: 89  PFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMY 148

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           ++CG+   A   F  M E NV TW +V+      G  E + ++F  M    VR N  ++ 
Sbjct: 149 AECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMP---VR-NLTSWN 204

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-- 252
            +L G    G +   R  F  M     +      +  ++  +   G  DEA     ++  
Sbjct: 205 GMLAGYAKAGELGLARRVFYEMPLRDEVS-----WSTMIVGFAHNGCFDEAFGFFRELLR 259

Query: 253 -PMKPHAGAWGALLNACRMYKNTEMGEL 279
             ++ +  +   +L+AC      E G++
Sbjct: 260 EEIRTNEVSLTGVLSACAQAGAFEFGKI 287


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/451 (47%), Positives = 305/451 (67%), Gaps = 5/451 (1%)

Query: 12   QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            +K FDG     +     ++ A AKCG   +++K+FD M E+D I+WN+M+A YAQ G S 
Sbjct: 2152 KKGFDG----SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 72   EALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL +FH M  H  V+ N V++ +VL AC H GAL  G+  H  + +  L+  V +GT++
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267

Query: 131  VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
            +DMY KCG +  A   F  MKE+NV +WT+++ G  M+G  +++L++F  M +AGV+PN 
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 2327

Query: 191  VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            +TFVSVL  C   GLVEEG   F++M+ +Y IEP +EHYGC+VDL+GRAG L+EA ++I 
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387

Query: 251  KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            +M MKP    WG+LL ACR++KN ++GE+A++KL EL+  N G YVLLSN+YA++  W  
Sbjct: 2388 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 2447

Query: 311  VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
            V  +R +MK + + K PG S++E+   VH F  GD+ HP +  I   L +++  L+  GY
Sbjct: 2448 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGY 2507

Query: 371  VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
            V N   V++D++EEEKE  L  HSEK+A+AFG+++   G  I I+KNLRVC DCH V K+
Sbjct: 2508 VPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKL 2567

Query: 431  ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ISK+ +R+ +VRD  RFHHFK+G CSC  YW
Sbjct: 2568 ISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 155/246 (63%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            Y + G   +  KVF+ +   +VV  T +IS    CGD+  AR++FDE+P ++ ++W AM
Sbjct: 169 FYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAM 228

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY +  +  EAL LF  MQ  ++  NE +MVS++ ACT +G L  GR  H Y  +N +
Sbjct: 229 INGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCI 288

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++ V LGTAL+DMYSKCG++  A++ F  M  +++ TW S+I  L ++G G+++L LFS 
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE 348

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++  V+P+ +TF+ VL  C  +  V+EG  +F  M + YGI P  EHY C+ +LY R+ 
Sbjct: 349 MERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSN 408

Query: 241 RLDEAL 246
            LDEA 
Sbjct: 409 NLDEAF 414



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 52/304 (17%)

Query: 12   QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            Q+ F    E D+   +A+I   +KCG +  AR +FDE+P R+ ++W +M+ GY Q  ++ 
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098

Query: 72   EALHLF--------HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
             AL LF         +   ++V L+ V MVSVLSAC+ +         H ++ +     +
Sbjct: 2099 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 2158

Query: 124  VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMK 182
            + +G  L+D Y+KCG    +   F  M+E++  +W S+I   A +G   ++LE+F  +++
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 2218

Query: 183  QAGVRPNEVTFVSVLRGC-----------------------------------CVVGLVE 207
              GVR N VT  +VL  C                                   C  G VE
Sbjct: 2219 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 2278

Query: 208  EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGAL 264
              ++ FD M +E  ++ W      +V  YG  GR  EALD+  KM    +KP+   + ++
Sbjct: 2279 MAKKTFDRM-KEKNVKSWT----AMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 2333

Query: 265  LNAC 268
            L AC
Sbjct: 2334 LAAC 2337



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 44/305 (14%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D +    +I   +  G +  A  +F ++       WN ++      G S +AL L+  M 
Sbjct: 58  DQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  ++ +   V+ ACT+  ++D G+  H  + +      V +   L+D Y KCG+  
Sbjct: 118 CQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 142 KAMDFFWGMKERNVYTWTSVIGGL-------------------------AM------NGA 170
            A+  F  M+ RNV +WT+VI GL                         AM      N  
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE--- 227
            E++LELF  M+   + PNE T VS+++ C  +G++  GR   D     Y I+  +E   
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIEIGV 292

Query: 228 HYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           + G  L+D+Y + G + +A++V   MP K     W +++ +  ++    +G+ A     E
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVFETMPRKS-LPTWNSMITSLGVHG---LGQEALNLFSE 348

Query: 287 LETKN 291
           +E  N
Sbjct: 349 MERVN 353



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 56   AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
            +WN+++A  A+ G S EAL  F  ++   +     S    + +C+ L  L  GR +H   
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041

Query: 116  ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
                 +  + + +AL+DMYSKCG +  A   F  +  RNV +WTS+I G   N   + +L
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 2101

Query: 176  ELFSLMKQA--------GVRPNEVTFVSVLRGCCVVG 204
             LF    +          V  + V  VSVL  C  V 
Sbjct: 2102 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVS 2138



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C +   L   R  H  I R+ L     L   L+ +YS  G +  A+  F+ ++   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
            +TW  +I    +NG  E++L L+  M   G+  ++ TF  V++ C     ++ G+    
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274
           S+ + YG    +     L+D Y + G    AL V  KM ++ +  +W  +++        
Sbjct: 150 SLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGL-----I 202

Query: 275 EMGEL--ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
             G+L  A R   E+ +KN  ++  + N Y  ++  +  + + + M+A+ +
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 141  NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            N A  F+  + + NV++W SVI  LA  G   ++L  FS +++ G+ P   +F   ++ C
Sbjct: 1966 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 2025

Query: 201  CVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
              +  +  GR  H  +    +G E  L     L+D+Y + G+L +A  + +++P++ +  
Sbjct: 2026 SALCDLVSGRMSHQQAF--VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVV 2082

Query: 260  AWGALLNACRMYKNTEMGELASRKLVELETK 290
            +W +++      +  +   L  +  +E ET+
Sbjct: 2083 SWTSMITGYVQNEQADNALLLFKDFLEEETE 2113


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 306/442 (69%), Gaps = 4/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV+ QT ++ A AK GD+DLA+K+FDEMP+ D  +WNA++AG+AQ  +  +A+  F  M+
Sbjct: 137 DVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMK 196

Query: 82  IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  +++ N V++   L AC+ LGAL +G   H YI   +L   V +   ++DMY+KCG+M
Sbjct: 197 VDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSM 256

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +KA   F  M+ ++++ TW ++I   AM+G G K+L+LF  + ++G+ P+ V++++VL  
Sbjct: 257 DKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCA 316

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVE+G + F+SM +  G+EP ++HYG +VDL GRAGRL EA D+++ +P  P+  
Sbjct: 317 CNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMV 374

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL ACR Y + EM ELASRKLVE+   + G +VLLSN+YA  + WD V  VR  M+
Sbjct: 375 LWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMR 434

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            + VKK PG S IE+  ++++F  GD++H    EI   L EI+ R+K  GY A+T+ V++
Sbjct: 435 RRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLH 494

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DI +E+KE+ LC HSEK+A+AFGL   +EG PI+++KNLR+C DCH V K+ISK++ REI
Sbjct: 495 DIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREI 554

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRDR RFH FKEG CSCK YW
Sbjct: 555 IVRDRTRFHRFKEGLCSCKDYW 576



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 6/251 (2%)

Query: 26  QTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +T ++  CA    GD+  A  +F  +P      WNA++ G A       A+  +  M   
Sbjct: 36  RTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAAS 95

Query: 84  DV--KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +   +++ ++    L AC    A  +    H  + R      V L T L+D Y+K G+++
Sbjct: 96  NGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLD 155

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGC 200
            A   F  M + ++ +W ++I G A       ++  F  MK  G +RPN VT    L  C
Sbjct: 156 LAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLAC 215

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             +G ++EG E       E  ++  ++    ++D+Y + G +D+A  V   M        
Sbjct: 216 SQLGALKEG-ESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLIT 274

Query: 261 WGALLNACRMY 271
           W  ++ A  M+
Sbjct: 275 WNTMIMAFAMH 285


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/440 (46%), Positives = 296/440 (67%), Gaps = 1/440 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +  Q +++   A CGDV  A K+FD+MPE+D +AWN+++ G+A+ GK  EAL L+  M  
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K +  ++VS+LSAC  +GAL  G+  HVY+ +  L   +     L+D+Y++CG + +
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCC 201
           A   F  M ++N  +WTS+I GLA+NG G++++ELF  M+   G+ P E+TFV +L  C 
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G+V+EG E+F  MR EY IEP +EH+GC+VDL  RAG++ +A + I  MPM+P+   W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL AC ++ ++++ E A  ++++LE  + G YVLLSN+YA  + W  V  +R+ M   
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK+PG S++EV   VHEF  GD++HP+ + I   L E++ RL+  GYV   + V  D+
Sbjct: 456 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 515

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE+ +  HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SKV+NREI+V
Sbjct: 516 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 575

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR+RFHHFK G CSC+ YW
Sbjct: 576 RDRSRFHHFKNGSCSCQDYW 595



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 42  ARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLS 97
           A K+F ++    PI    WN ++ GYA+ G S  A  L+  M++   V+ +  +   ++ 
Sbjct: 72  AHKVFSKI--EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
           A T +  +  G   H  + R+     + +  +L+ +Y+ CG++  A   F  M E+++  
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           W SVI G A NG  E++L L++ M   G++P+  T VS+L  C  +G +  G+     M 
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +  G+   L     L+DLY R GR++EA  + ++M  K ++ +W +L+
Sbjct: 250 K-VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLI 295


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/462 (46%), Positives = 296/462 (64%), Gaps = 13/462 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAML--AGYAQCGK 69
            +F+ I  P +     +IS+ A       +A  ++  +     +  N     + +  CG 
Sbjct: 61  SIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGS 120

Query: 70  S----------REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
                      +  L LF  MQ   +K NEV++V+++SAC  LGAL QG WAHVY+ ++ 
Sbjct: 121 QPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHN 180

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           LK+   +GTAL+DMYSKCG ++ A   F  +  R+   + ++IGG A++G G ++L+LF 
Sbjct: 181 LKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFK 240

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G+ P++VT V  +  C  VGLVEEG + F+SM+  YG+EP LEHYGCLVDL GRA
Sbjct: 241 KMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRA 300

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           GRL EA + +  MPMKP+A  W +LL A R++ N E+GE+  + L++LE +  G YVLLS
Sbjct: 301 GRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLS 360

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA    WD V  VR++MK  G+ K+PG S++EV   +HEF  GD+THPR  EI + L 
Sbjct: 361 NMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLE 420

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+SRRL   G+   T  V++DIEEEEKED L  HSE++AIAF LI+     PIRI+KNLR
Sbjct: 421 EMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLR 480

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH  +K+ISK++ REIIVRDRNRFHHFKEG CSC  YW
Sbjct: 481 VCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 306/442 (69%), Gaps = 4/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV+ QT ++ A AK GD+DLA+K+FDEMP+ D  +WNA++AG+AQ  +  +A+  F  M+
Sbjct: 137 DVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMK 196

Query: 82  IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  +++ N V++   L AC+ LGAL +G   H YI   +L   V +   ++DMY+KCG+M
Sbjct: 197 VDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSM 256

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +KA   F  M+ ++++ TW ++I   AM+G G K+L+LF  + ++G+ P+ V++++VL  
Sbjct: 257 DKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCA 316

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVE+G + F+SM +  G+EP ++HYG +VDL GRAGRL EA D+++ +P  P+  
Sbjct: 317 CNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMV 374

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL ACR Y + EM ELASRKLVE+   + G +VLLSN+YA  + WD V  VR  M+
Sbjct: 375 LWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMR 434

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            + VKK PG S IE+  ++++F  GD++H    EI   L EI+ R+K  GY A+T+ V++
Sbjct: 435 RRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLH 494

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DI +E+KE+ LC HSEK+A+AFGL   +EG PI+++KNLR+C DCH V K+ISK++ REI
Sbjct: 495 DIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREI 554

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRDR RFH FKEG CSCK YW
Sbjct: 555 IVRDRTRFHRFKEGLCSCKDYW 576



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 6/251 (2%)

Query: 26  QTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +T ++  CA    GD+  A  +F  +P      WNA++ G A       A+  +  M   
Sbjct: 36  RTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAAS 95

Query: 84  DV--KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +   +++ ++    L AC    A  +    H  + R      V L T L+D Y+K G+++
Sbjct: 96  NGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLD 155

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGC 200
            A   F  M + ++ +W ++I G A       ++  F  MK  G +RPN VT    L  C
Sbjct: 156 LAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLAC 215

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             +G ++EG E       E  +   ++    ++D+Y + G +D+A  V   M        
Sbjct: 216 SQLGALKEG-ESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLIT 274

Query: 261 WGALLNACRMY 271
           W  ++ A  M+
Sbjct: 275 WNTMIMAFAMH 285


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/446 (47%), Positives = 300/446 (67%), Gaps = 1/446 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           MYA+ G  G+ Q+VFD +   P      A+I    K G VD+AR +FDEM  RD I +N+
Sbjct: 283 MYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNS 342

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY   G+ REAL LF  M+ HD++++  ++V++L+AC  LGAL QGR  H  IE+  
Sbjct: 343 MMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRL 402

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           ++  + LGTAL+DMY KCG +++A   F  M +R+V+TWT++I GLA NG G+ +LE F 
Sbjct: 403 VEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFY 462

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+  G +PN V++++VL  C    L+ EGR +FD MR  Y I P +EHYGC++DL GR+
Sbjct: 463 QMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRS 522

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G LDEA+D++  MP++P+A  W ++L+ACR++K+ ++ + A+  L++LE    G YV L 
Sbjct: 523 GLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLY 582

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIY +S+ W+    +R +M+ + VKK  G S I V  +VH+F   D++HPR  EI  ML 
Sbjct: 583 NIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLE 642

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           EIS RLK  GY   T+ +  D++EEEKE  L  HSEK+AIAFGLI+L   +P+ I KNLR
Sbjct: 643 EISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLR 702

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRN 445
           VC DCH   K+IS+++NREIIVRDR+
Sbjct: 703 VCEDCHSAIKLISRLWNREIIVRDRS 728



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 33/284 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY  LG     ++ FD IH  D V  T +IS  AK G +   + +  + P RD I+W ++
Sbjct: 151 MYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSL 210

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A Y++  ++REA+  F  M  H +  +EV++++VLSAC  L  L+ GR  H+ +E   +
Sbjct: 211 IAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGM 270

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
             +  L  AL+DMY+KCG+   A   F           W                     
Sbjct: 271 PTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFD 330

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M+ R++ T+ S++ G   +G   ++L LF  M++  +R +  T V++L  C  +G +++
Sbjct: 331 EMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQ 390

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           GR     + +   +E  +     L+D+Y + GR+DEA  V  +M
Sbjct: 391 GRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRM 433



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T L+   +K G +            R+V +WTS+I   +      +++  F  M   G+ 
Sbjct: 177 TMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIA 236

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+EVT ++VL  C  +  +E GR     +  E G+         L+D+Y + G    A  
Sbjct: 237 PDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQ 295

Query: 248 VINKMPMKPHAGAWGALLN 266
           V + +   P   +W A+++
Sbjct: 296 VFDALGRGPRPQSWNAIID 314


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/443 (47%), Positives = 291/443 (65%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  Q  +I     CG +D A K+F+EMPERD ++W++M+A +A+ G   EAL LF  
Sbjct: 116 DSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQR 175

Query: 80  MQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ +  VK +EV ++SV+SA + LG L+ G+W   +I RN L+ TV+LGTALVDM+S+CG
Sbjct: 176 MQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + ++M  F  M ERNV TWT++I GLA++G   ++L +F  M+  G +P+ VTF  VL 
Sbjct: 236 CIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV EG   F+S+R EYG+EP  EHYGC+VDL GRAG L+EA   ++ MP++P++
Sbjct: 296 ACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS 355

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL AC  +   E+ E    K+ EL++ + G YVLLSN+Y     W     VR  M
Sbjct: 356 IIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSM 415

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + K + K PGCS+I V+  +HEF AGD  HP++  I   L  +   LK+ GY  + + V+
Sbjct: 416 REKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVL 475

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +DIEEEEKE TL  HSEK+A+AF L+  K+   IR++KNLR+C DCH   K  S VF RE
Sbjct: 476 FDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           II+RDRNRFHHF +G CSC+ YW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 14/268 (5%)

Query: 29  MISACAKCGDVDL--ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           ++ +CA      L  AR +FD +   D  A+N ++  +A    S         M +  V 
Sbjct: 26  LLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MAMAGVS 84

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   VL AC     L  G   H  + +      V +   L+  Y  CG ++ A+  
Sbjct: 85  PDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKV 141

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGL 205
           F  M ER++ +W+S+I   A NG G ++L LF  M+  G V+P+EV  +SV+    ++G 
Sbjct: 142 FEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGD 201

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +E G+     + R  G+E  +     LVD++ R G ++E++ V ++M  + +   W AL+
Sbjct: 202 LELGKWIRGFISRN-GLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGER-NVLTWTALI 259

Query: 266 NACRMYKNTEMGELASRKLVELETKNHG 293
           N   ++     G  A    +  E +NHG
Sbjct: 260 NGLAVH-----GRSAEALRMFYEMRNHG 282


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 307/437 (70%), Gaps = 5/437 (1%)

Query: 29  MISACAKCG--DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI--HD 84
           M+ + AK G  D+++ARK+FD M ERD ++WN+M+A YAQ G S EA+ L+  M      
Sbjct: 238 MLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 296

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           +K N V++ +VL AC H GA+  G+  H  + R  L+  V +GT++VDMYSKCG +  A 
Sbjct: 297 IKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMAS 356

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +KE+N+ +W+++I G  M+G G+++LE+F+ MK++G+RPN +TF+SVL  C   G
Sbjct: 357 RAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAG 416

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L++EGR  +++M++E+GIE  +EHYGC+VDL GRAG LDEA  +I +M +KP A  WGAL
Sbjct: 417 LLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGAL 476

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L+ACR++KN E+ E++ ++L EL+  N G YVLLSNIYAE++ W  V  +R ++K + ++
Sbjct: 477 LSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIE 536

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PG S  E+  +++ F+ GD++HP++ EI   L ++  R++ AGYV NT  V++D++EE
Sbjct: 537 KPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEE 596

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  L  HSEK+A+AF L++      I I+KNLRVC DCH   K I+K+  REII+RD 
Sbjct: 597 EKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDL 656

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHFK+G CSC+ YW
Sbjct: 657 QRFHHFKDGLCSCRDYW 673



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            G+   D    +A++     C     AR+ FDE+P+ +P+   AM +GY +      +L 
Sbjct: 122 SGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLE 181

Query: 76  LFHLMQIHDVK--LNEVSMVSVLSACTHLGALDQGRWA--HVYIERNRLKMTVTLGTALV 131
           LF  M   D    ++E + +   SA   +   D+G  A  H  I +   +    +   ++
Sbjct: 182 LFRAMIASDSASVVDEAAALVAFSASARVP--DRGVTASLHALIAKIGFERNAGVVNTML 239

Query: 132 DMYSKCG--NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ--AGVR 187
           D Y+K G  ++  A   F  M ER+V +W S+I   A NG   +++ L+S M     G++
Sbjct: 240 DSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIK 298

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            N V   +VL  C   G ++ G+   + + R  G+E  +     +VD+Y + GR++ A  
Sbjct: 299 CNAVALSAVLLACAHAGAIQTGKRIHNQVVR-MGLEENVYVGTSIVDMYSKCGRVEMASR 357

Query: 248 VINKMPMKPHAGAWGALLNACRMY 271
              K+  K +  +W A++    M+
Sbjct: 358 AFRKIKEK-NILSWSAMITGYGMH 380



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 85/147 (57%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +V   T+++   +KCG V++A + F ++ E++ ++W+AM+ GY   G+ +EAL +F  
Sbjct: 333 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTE 392

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   ++ N ++ +SVL+AC+H G LD+GR W +   +   ++  V     +VD+  + G
Sbjct: 393 MKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAG 452

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGG 164
            +++A      MK + +   W +++  
Sbjct: 453 CLDEAYSLIKEMKVKPDAAIWGALLSA 479


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/463 (47%), Positives = 300/463 (64%), Gaps = 3/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+ + G +   + VFD   + D      MI A    G++ LA+++FDEM ERD ++W+ +
Sbjct: 322 MFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTI 381

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY Q G   EAL  FH M   +VK NE +MVS L+AC++L ALDQG+W HVYI R+ +
Sbjct: 382 IAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNI 441

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           KM   L  +L+DMY+KCG ++ A   F   K +R V+ W ++IGG AM+G  E+++ +F 
Sbjct: 442 KMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFE 501

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK   V PN+VTF+++L  C    +V+EG+ +F+ M  +YGI P +EHYGC+VDL  R+
Sbjct: 502 KMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRS 561

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L ++ ++I  MPM P    WGALLNACR+YK+ E G    R + E++  + G  VLL 
Sbjct: 562 GHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLG 621

Query: 300 NIYAESKNWDRVINVRQIMKAKG-VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           NIY+ S  W+    VR+  +     KK+PG S IE++   HEF  GD +HP+  EI   L
Sbjct: 622 NIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFL 681

Query: 359 GEISRRLKLAGYVANTNPVMYDI-EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            E+  +LK+AGYV     V+ D  +EE+KE  L  HSEK+AIAFGL++   G PIRIVKN
Sbjct: 682 DEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKN 741

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           LRVC DCH  TK ISKV++R IIVRDR R+HHFK+G CSCK Y
Sbjct: 742 LRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 134/312 (42%), Gaps = 30/312 (9%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMI-----SACAKCGDVDLARKMFDE---MPERDPIA 56
           L  L Y  K+FD I +PD+     MI     S  +    + + R +  +    P R    
Sbjct: 223 LASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNR---- 278

Query: 57  WNAMLAGYAQCGKS---REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
             + +  +  CG     RE   +F     H VK+     V V++A   +     G+W  V
Sbjct: 279 -YSFVFAFGACGNGMCVREGEQVF----THAVKVGLDGNVFVVNALIGMF----GKWGRV 329

Query: 114 YIERNRLKMTVTLG----TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
              RN     V         ++  Y   GNM  A + F  M ER+V +W+++I G    G
Sbjct: 330 EDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVG 389

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
              ++L+ F  M Q+ V+PNE T VS L  C  +  +++G+     +RR+  I+      
Sbjct: 390 CFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRD-NIKMNDRLL 448

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY-KNTEMGELASRKLVELE 288
             L+D+Y + G +D A  V ++  +K     W A++    M+ K  E   +  +  VE  
Sbjct: 449 ASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKV 508

Query: 289 TKNHGAYVLLSN 300
           + N   ++ L N
Sbjct: 509 SPNKVTFIALLN 520


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/428 (47%), Positives = 298/428 (69%), Gaps = 4/428 (0%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           A CG++D A+ +FD M  RD ++W AM+ GY +      AL LF  MQ+ +VK +E +MV
Sbjct: 227 AACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMV 286

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L AC  LGAL+ G W    I++N  K    +G ALVDMY KCGN+ KA   F  M ++
Sbjct: 287 SILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQK 346

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           + +TWT++I GLA+NG GE++L +FS M +A V P+E+T++ VL  C    +V++G+  F
Sbjct: 347 DKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFF 402

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            +M  ++GI+P + HYGC+VDL G  G L+EAL+VI  MP+KP++  WG+ L ACR++KN
Sbjct: 403 TNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKN 462

Query: 274 TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE 333
            ++ ++A+++++ELE +N   YVLL NIYA SK W+ +  VR++M  +G+KK PGCS++E
Sbjct: 463 VQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLME 522

Query: 334 VDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKH 393
           ++  V+EF AGD++HP+  EI   L  + + L  AGY  +T+ V  D+ EE+KE  L +H
Sbjct: 523 LNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRH 582

Query: 394 SEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEG 453
           SEK+AIA+ LIS   GV IRIVKNLR+C DCH + K++S+ +NRE+IV+D+ RFHHF+ G
Sbjct: 583 SEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHG 642

Query: 454 KCSCKGYW 461
            CSC  +W
Sbjct: 643 SCSCNNFW 650



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 30/237 (12%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + ++  Q A I   + CG VDLA K+FD     + + WN ML+GY +             
Sbjct: 139 DSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNR------------- 185

Query: 80  MQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
                VK  ++S M+ VLSAC+ L  L+ G+    YI           G  +  M++ CG
Sbjct: 186 -----VKQFKISKMLLVLSACSKLKDLEWGKHIFKYIN----------GGIVEHMFAACG 230

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M++A   F  MK R+V +WT++I G         +L LF  M+ + V+P+E T VS+L 
Sbjct: 231 EMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILI 290

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C ++G +E G      + +             LVD+Y + G + +A  V  +M  K
Sbjct: 291 ACALLGALELGEWVKTCIDKNSNKNDSFVG-NALVDMYFKCGNVRKAKKVFKEMYQK 346



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A++    KCG+V  A+K+F EM ++D   W  M+ G A  G   EAL +F  M 
Sbjct: 316 DSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMI 375

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE-RNRLKMTVTLGTALVDMYSKCGNM 140
              V  +E++ + VL AC     +D+G+     +  ++ +K TVT    +VD+    G +
Sbjct: 376 EASVTPDEITYIGVLCACM----VDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCL 431

Query: 141 NKAMDFFWGMKER-NVYTWTSVIGG 164
            +A++    M  + N   W S +G 
Sbjct: 432 EEALEVIVNMPVKPNSIVWGSPLGA 456



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 18/270 (6%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D + +  +I+ C   + G+++ A ++FD +P      WN M+ GY++       + ++ L
Sbjct: 38  DPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLL 97

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   ++K +  +    L   T   AL  G+    +  ++     + +  A + M+S CG 
Sbjct: 98  MLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGI 157

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE--VTFVSVL 197
           ++ A   F       V TW  ++ G       + S  L  L   + ++  E        +
Sbjct: 158 VDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYI 217

Query: 198 RGCCV------VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            G  V       G ++E +  FD+M+    +  W      ++D Y R      AL +  +
Sbjct: 218 NGGIVEHMFAACGEMDEAQGVFDNMKTR-DVVSWT----AMIDGYLRMNHFIGALALFRE 272

Query: 252 MPM---KPHAGAWGALLNACRMYKNTEMGE 278
           M M   KP      ++L AC +    E+GE
Sbjct: 273 MQMSNVKPDEFTMVSILIACALLGALELGE 302


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/489 (45%), Positives = 306/489 (62%), Gaps = 32/489 (6%)

Query: 3   AELGCLGYCQKVFDGIH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDP 54
           A + C G  +K  +GIH        E +   Q A+I   ++ GD+  ++++FD M +RD 
Sbjct: 328 AYVRCEGISRK--EGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDI 385

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQ------IHD----------VKLNEVSMVSVLSA 98
           ++WN ++  Y  CG+S +AL L H MQ       +D           K N +++++VL  
Sbjct: 386 VSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPG 445

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C  L AL +G+  H Y  RN L   VT+G+ALVDMY+KCG +N A   F  M  RNV TW
Sbjct: 446 CASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITW 505

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAG-----VRPNEVTFVSVLRGCCVVGLVEEGREHF 213
             +I    M+G G++SLELF  M   G     V+P EVTF+++   C   G+V+EG   F
Sbjct: 506 NVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLF 565

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK-PHAGAWGALLNACRMYK 272
             M+ E+GIEP  +HY C+VDL GRAG+++EA  ++N MP      GAW +LL ACR+Y 
Sbjct: 566 HKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYH 625

Query: 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVI 332
           N E+GE+A+  L++L+      YVLLSNIY+ +  WD+ +N+R+ MKA GVKK PGCS I
Sbjct: 626 NIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWI 685

Query: 333 EVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCK 392
           E   EVH+F AGD +HP+  ++   L  +S RLK  GYV +T  V++DI+EEEKE  LC 
Sbjct: 686 EYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCG 745

Query: 393 HSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
           HSEK+AIAFG+++   G  IR+ KNLRVC DCH  +K ISK+ +REII+RD  RFHHFK+
Sbjct: 746 HSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKD 805

Query: 453 GKCSCKGYW 461
           G CSC  YW
Sbjct: 806 GTCSCGDYW 814



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 148/322 (45%), Gaps = 19/322 (5%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
             A+++  AK G +D A+ +     +RD + WN+M++ ++Q  +  EAL    LM +  V
Sbjct: 153 NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGV 212

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAM 144
           K + V+  SVL AC+HL  L  G+  H Y  R + +     +G+ALVDMY  CG +    
Sbjct: 213 KPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGR 272

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVV 203
             F  + +R +  W ++I G A +   EK+L LF  M+  AG+  N  T  S++      
Sbjct: 273 LVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRC 332

Query: 204 -GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            G+  +   H   ++R      +L++   L+D+Y R G +  +  + + M  +    +W 
Sbjct: 333 EGISRKEGIHGYVIKRGLETNRYLQN--ALIDMYSRMGDIKTSKRIFDSMEDRDIV-SWN 389

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
            ++ +  +   +    L   ++  +E K+          Y + K      N   +M    
Sbjct: 390 TIITSYVICGRSSDALLLLHEMQRIEEKS-----TYDGDYNDEKQVPFKPNSITLMTV-- 442

Query: 323 VKKLPGC---SVIEVDREVHEF 341
              LPGC   S +   +E+H +
Sbjct: 443 ---LPGCASLSALAKGKEIHAY 461



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 132/271 (48%), Gaps = 10/271 (3%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V     +++   KCG +  A K+FD + ERD ++WN++++   +  +   A+  F LM +
Sbjct: 47  VTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLM 106

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQ---GRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
              + +  ++VS+  AC++L   D    G+  H    R     T +   AL+ MY+K G 
Sbjct: 107 EGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGR 165

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A       ++R++ TW S+I   + N    ++L    LM   GV+P+ VTF SVL  
Sbjct: 166 LDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPA 225

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  + L+  G+E H  ++R +  IE        LVD+Y   G+++    V + + +    
Sbjct: 226 CSHLDLLRTGKEIHAYALRTDDVIENSFVG-SALVDMYCNCGQVESGRLVFDSV-LDRKI 283

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELET 289
           G W A++     Y  +E  E A    +E+E 
Sbjct: 284 GLWNAMIAG---YAQSEHDEKALMLFIEMEA 311



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 132/305 (43%), Gaps = 53/305 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY   G +   + VFD +                      L RK+           WNAM
Sbjct: 261 MYCNCGQVESGRLVFDSV----------------------LDRKIG---------LWNAM 289

Query: 61  LAGYAQCGKSREALHLFHLMQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGYAQ     +AL LF  M+    +  N  +M S++ A      + +    H Y+ +  
Sbjct: 290 IAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRG 349

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L+    L  AL+DMYS+ G++  +   F  M++R++ +W ++I    + G    +L L  
Sbjct: 350 LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLH 409

Query: 180 LM----------------KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGI 222
            M                KQ   +PN +T ++VL GC  +  + +G+E H  ++R     
Sbjct: 410 EMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLAS 469

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY-KNTEMGELAS 281
           +  +     LVD+Y + G L+ A  V ++MP++ +   W  ++ A  M+ K  E  EL  
Sbjct: 470 QVTVG--SALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGKGKESLELFE 526

Query: 282 RKLVE 286
             + E
Sbjct: 527 DMVAE 531



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDMYSKCGNMNKAMD 145
           +  +  +VL A   +  L  G+  H ++ +       +VT+   LV+MY KCG +  A  
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  + ER+  +W S+I  L      E +++ F LM   G  P+  T VS+   C     
Sbjct: 69  VFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALAC----- 123

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGC--------------LVDLYGRAGRLDEA 245
                    ++R+  G+    + +GC              L+ +Y + GRLD+A
Sbjct: 124 --------SNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDA 169


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/460 (44%), Positives = 291/460 (63%), Gaps = 4/460 (0%)

Query: 6    GCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
             CL   +KV   I    +E D     A+ISA +K G +  AR++FD+MP RD ++WN ++
Sbjct: 647  ACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKII 706

Query: 62   AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            AGYAQ G  + A+   + MQ  DV  N+ S VS+L+AC+   AL++G+  H  I + +L+
Sbjct: 707  AGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQ 766

Query: 122  MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
              V +G AL+ MY+KCG+  +A + F  + E+NV TW ++I   A +G   K+L  F+ M
Sbjct: 767  GDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCM 826

Query: 182  KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
            ++ G++P+  TF S+L  C   GLV EG + F SM  EYG+ P +EHYGCLV L GRA R
Sbjct: 827  EKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARR 886

Query: 242  LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
              EA  +IN+MP  P A  W  LL ACR++ N  + E A+   ++L  +N   Y+LLSN+
Sbjct: 887  FQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNV 946

Query: 302  YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
            YA +  WD V  +R++M+ +G++K PG S IEVD  +HEF A D +HP   EI   L  +
Sbjct: 947  YAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRL 1006

Query: 362  SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
            S  ++ AGY  +T  V++D+ +  +E +LC HSE++AIA+GLI    G PIRI KNLR+C
Sbjct: 1007 SVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRIC 1066

Query: 422  WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
             DCH  +K ISK+  REII RD NRFH FK GKCSC+ YW
Sbjct: 1067 GDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 149/265 (56%), Gaps = 3/265 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           E G L +     DG H  DV    A+IS  A+CGD+  AR++F  MP+RD I+WNA++AG
Sbjct: 347 EAGKLIHSHISEDG-HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YA+     EA+ L+  MQ   VK   V+ + +LSAC +  A   G+  H  I R+ +K  
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             L  AL++MY +CG++ +A + F G + R+V +W S+I G A +G+ E + +LF  M+ 
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQN 525

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
             + P+ +TF SVL GC     +E G++    +  E G++  +     L+++Y R G L 
Sbjct: 526 EELEPDNITFASVLSGCKNPEALELGKQIHGRI-TESGLQLDVNLGNALINMYIRCGSLQ 584

Query: 244 EALDVINKMPMKPHAGAWGALLNAC 268
           +A +V + +  +    +W A++  C
Sbjct: 585 DARNVFHSLQHR-DVMSWTAMIGGC 608



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 132/229 (57%), Gaps = 1/229 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+++   +CG +  A+ +F+    RD I+WN+M+AG+AQ G    A  LF  MQ  +++
Sbjct: 470 NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            + ++  SVLS C +  AL+ G+  H  I  + L++ V LG AL++MY +CG++  A + 
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNV 589

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++ R+V +WT++IGG A  G   K++ELF  M+  G RP + TF S+L+ C     +
Sbjct: 590 FHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACL 649

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +EG++    +    G E        L+  Y ++G + +A +V +KMP +
Sbjct: 650 DEGKKVIAYILNS-GYELDTGVGNALISAYSKSGSMTDAREVFDKMPSR 697



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 130/229 (56%), Gaps = 3/229 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   TA+++ C +CGDVD A++ F    +RD + +NA++A  AQ G + EA   ++ M+
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V LN  + +S+L+AC+   AL+ G+  H +I  +     V +G AL+ MY++CG++ 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA + F+ M +R++ +W ++I G A      +++ L+  M+  GV+P  VTF+ +L  C 
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
                 +G+  H D +R   GI+        L+++Y R G L EA +V 
Sbjct: 443 NSSAYADGKMIHEDILRS--GIKSNGHLANALMNMYRRCGSLMEAQNVF 489



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 132/247 (53%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I+   +CG +  AR +F  +  RD ++W AM+ G A  G+  +A+ LF  MQ
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +  + +  S+L  CT    LD+G+    YI  +  ++   +G AL+  YSK G+M 
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMT 685

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  M  R++ +W  +I G A NG G+ ++E    M++  V PN+ +FVS+L  C 
Sbjct: 686 DAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACS 745

Query: 202 VVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
               +EEG R H + ++R+  ++  +     L+ +Y + G   EA +V + + ++ +   
Sbjct: 746 SFSALEEGKRVHAEIVKRK--LQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVT 802

Query: 261 WGALLNA 267
           W A++NA
Sbjct: 803 WNAMINA 809



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 12/273 (4%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++    ++ D   Q +++S   KCGD+  AR++F  +  RD +++N ML  YAQ    +E
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKE 212

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
            L LF  M    +  ++V+ +++L A T    LD+G+  H       L   + +GTALV 
Sbjct: 213 CLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVT 272

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           M  +CG+++ A   F G  +R+V  + ++I  LA +G   ++ E +  M+  GV  N  T
Sbjct: 273 MCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTT 332

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           ++S+L  C     +E G+    S   E G    ++    L+ +Y R G L +A ++   M
Sbjct: 333 YLSILNACSTSKALEAGK-LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 253 PMKPHAGAWGALL----------NACRMYKNTE 275
           P K    +W A++           A R+YK  +
Sbjct: 392 P-KRDLISWNAIIAGYARREDRGEAMRLYKQMQ 423



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 1/225 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD+     +I+   KC  V  A ++F EMP RD I+WN++++ YAQ G  ++A  LF  M
Sbjct: 60  PDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 119

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q      N+++ +S+L+AC     L+ G+  H  I +   +    +  +L+ MY KCG++
Sbjct: 120 QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDL 179

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A   F G+  R+V ++ +++G  A     ++ L LF  M   G+ P++VT++++L   
Sbjct: 180 PRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAF 239

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
               +++EG+     +  E G+   +     LV +  R G +D A
Sbjct: 240 TTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 5/185 (2%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
            CG  RE +   H  Q    +    + V++L  CT    L + +  H  +    +   + 
Sbjct: 6   HCGPDREDVSNTH--QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIF 63

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L   L++MY KC ++  A   F  M  R+V +W S+I   A  G  +K+ +LF  M+ AG
Sbjct: 64  LSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG 123

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
             PN++T++S+L  C     +E G++ H   ++  Y  +P +++   L+ +YG+ G L  
Sbjct: 124 FIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPR 181

Query: 245 ALDVI 249
           A  V 
Sbjct: 182 ARQVF 186



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 31/108 (28%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G  G  Q+VFD I E +VV   AMI+A                            
Sbjct: 778 MYAKCGSQGEAQEVFDNIIEKNVVTWNAMINA---------------------------- 809

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
              YAQ G + +AL  F+ M+   +K +  +  S+LSAC H G + +G
Sbjct: 810 ---YAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEG 854


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/463 (47%), Positives = 301/463 (65%), Gaps = 6/463 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           +A  G +   +++F+ +  P  V  T+M++   + GDV  AR++F+EMP RD ++WNAM+
Sbjct: 85  HAMSGDVVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMM 144

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +G A   +  EAL LF  M       N  +++S L+AC   GAL+ G+W H ++ER RL 
Sbjct: 145 SGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLF 204

Query: 122 M--TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                 LGTAL+DMY+KCG +  A+D F  ++ RN  TW ++I GLAMNG   K+L++F 
Sbjct: 205 RWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFR 264

Query: 180 LMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M+    V P+EVTFV VL  C   G V+ GREHF  + ++YGI   LEHY C+VDL  R
Sbjct: 265 KMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLAR 324

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           +G L EA  +I  MPMKP A  W ALL  CR++K+ +M E A   + E+E    G +VLL
Sbjct: 325 SGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETA---ISEMEATCSGDHVLL 381

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SN+YA    W  V +VR+ M++KG++K+PGCS IE++  +HEF +GD++HP YN+I   L
Sbjct: 382 SNLYAAVGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKL 441

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            EIS R++  GYV  T  V YD+EEEEKE  L  HSEK+AIAFGLI     V IRIVKNL
Sbjct: 442 AEISARMQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNL 501

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R C DCH   K++S++++ EI+VRDR RFHHF EG CSC  +W
Sbjct: 502 RFCADCHKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + +  L+    +  AL+  Y+  G ++ A   F GM  R+  ++ S+I   AM+G  
Sbjct: 32  HALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGDV 91

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
             +  LF  +      P  VT+ S++ G C  G V   R  F+ M
Sbjct: 92  VSARRLFERVPS----PTPVTWTSMVAGLCRAGDVAAARRLFEEM 132


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/458 (45%), Positives = 297/458 (64%), Gaps = 1/458 (0%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG L +   + +G     +V  TA I    KCGDV  AR +FD    +D + W+AM++ 
Sbjct: 345 ELGKLLHAFTLRNGF-TLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISS 403

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ     EA  +F  M    ++ NE +MVS+L  C   G+L+ G+W H YI++  +K  
Sbjct: 404 YAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGD 463

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           + L T+ VDMY+ CG+++ A   F    +R++  W ++I G AM+G GE +LELF  M+ 
Sbjct: 464 MILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEA 523

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV PN++TF+  L  C   GL++EG+  F  M  E+G  P +EHYGC+VDL GRAG LD
Sbjct: 524 LGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLD 583

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           EA ++I  MPM+P+   +G+ L AC+++KN ++GE A+++ + LE    G  VL+SNIYA
Sbjct: 584 EAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYA 643

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            +  W  V  +R+ MK +G+ K PG S IEV+  +HEF  GD  HP   ++  M+ E+  
Sbjct: 644 SANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMRE 703

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           +L+ AGY  + + V+++I++E+K   L  HSEK+A+A+GLIS   GVPIRIVKNLRVC D
Sbjct: 704 KLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDD 763

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH+ TK++SK++ REIIVRDRNRFHHFKEG CSC  YW
Sbjct: 764 CHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 5/263 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA+I    KC ++  AR++FD + +   I+W AM+A Y  C    E + LF  M    + 
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            NE++M+S++  C   GAL+ G+  H +  RN   +++ L TA +DMY KCG++  A   
Sbjct: 326 PNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSV 385

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F   K +++  W+++I   A N   +++ ++F  M   G+RPNE T VS+L  C   G +
Sbjct: 386 FDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSL 445

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E G+     + ++ GI+  +      VD+Y   G +D A  +  +   +     W A+++
Sbjct: 446 EMGKWIHSYIDKQ-GIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRD-ISMWNAMIS 503

Query: 267 ACRMYKNTEMGELASRKLVELET 289
              M+ +   GE A     E+E 
Sbjct: 504 GFAMHGH---GEAALELFEEMEA 523



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 7/257 (2%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V +G H    VC  A+I   ++ G + LAR +FD++  +D ++W+ M+  Y + G   EA
Sbjct: 151 VKNGFHGDVFVCN-ALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEA 209

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL--KMTVTLGTALV 131
           L L   M +  VK +E+ M+S+      L  L  G+  H Y+ RN    K  V L TAL+
Sbjct: 210 LDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALI 269

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DMY KC N+  A   F G+ + ++ +WT++I          + + LF  M   G+ PNE+
Sbjct: 270 DMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEI 329

Query: 192 TFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T +S+++ C   G +E G+  H  ++R  + +   L      +D+YG+ G +  A  V +
Sbjct: 330 TMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLA--TAFIDMYGKCGDVRSARSVFD 387

Query: 251 KMPMKPHAGAWGALLNA 267
               K     W A++++
Sbjct: 388 SFKSKD-LMMWSAMISS 403



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 100/209 (47%), Gaps = 2/209 (0%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++  Y +     +A  ++  M+  D +++   + SVL AC  + +   G+  H ++ +N 
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               V +  AL+ MYS+ G++  A   F  ++ ++V +W+++I     +G  +++L+L  
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M    V+P+E+  +S+      +  ++ G+  H   MR     +  +     L+D+Y +
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNA 267
              L  A  V + +  K    +W A++ A
Sbjct: 275 CENLAYARRVFDGLS-KASIISWTAMIAA 302


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/463 (45%), Positives = 297/463 (64%), Gaps = 5/463 (1%)

Query: 3   AELGCL---GYCQKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+LG L    +  K  D ++   D+    ++IS  +KC  VD+A  +F+ +  R  ++WN
Sbjct: 360 ADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWN 419

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GYAQ G+  EAL+ F  M+   +K +  +MVSV+ A   L      +W H  I R+
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L   + + TALVDMYSKCG ++ A   F  + +R+V TW ++I G   +G G  +L+LF
Sbjct: 480 CLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLF 539

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             MK+  V PN++T++SV+  C   GLV+EG  HF SM+++YG+EP ++HYG +VDL GR
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGR 599

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGR+ EA D I  MP+ P    +GA+L AC+++KN E+GE A++KL EL     G +VLL
Sbjct: 600 AGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLL 659

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           +NIYA +  W +V  VR+ M+ KG+KK PGCSV+E+  EVH F++G  THP+   I   L
Sbjct: 660 ANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFL 719

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+   +K AGYV +TN ++ D+E++ +E  L  HSEK+AIAFGL++   G  I + KNL
Sbjct: 720 EELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNL 778

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH+ TK IS V  REIIVRD  RFHHFK G CSC  YW
Sbjct: 779 RVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 133/244 (54%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T +++  AKC  +D A KMFD MPERD ++WN ++AG++Q G +++AL L   MQ
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + + +++V+VL A   +G L  G+  H Y  R      V + TAL DMYSKCG++ 
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F GM ++ V +W S++ G   NG  EK++ +F  M + G+ P  VT +  L  C 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +E G+        +  +   +     L+ +Y +  R+D A D+ N +  + H  +W
Sbjct: 361 DLGDLERGK-FVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV-SW 418

Query: 262 GALL 265
            A++
Sbjct: 419 NAMI 422



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 138/284 (48%), Gaps = 43/284 (15%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA+    +KCG V+ AR +FD M ++  ++WN+M+ GY Q G+  +A+ +F  M  
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +    V+++  L AC  LG L++G++ H ++++  L   +++  +L+ MYSKC  ++ 
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV------ 196
           A D F  +  R   +W ++I G A NG   ++L  FS MK  G++P+  T VSV      
Sbjct: 403 ASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAE 462

Query: 197 --------------LRGC---------------CVVGLVEEGREHFDSMRREYGIEPWLE 227
                         +R C                  G +   R+ FD +   + I     
Sbjct: 463 LSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT---- 518

Query: 228 HYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
            +  ++D YG  G    ALD+ +KM    ++P+   + ++++AC
Sbjct: 519 -WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 4/242 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT ++S  +K G ++ A ++F+ + ++    ++ ML GYA+      AL     M+  DV
Sbjct: 84  QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           K    +   +L  C     L +G+  H  +  N     V   T +V+MY+KC  ++ A  
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++ +W ++I G + NG  +K+LEL   M+  G RP+ +T V+VL     VGL
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  G+  H  ++R   G    +     L D+Y + G ++ A  + + M  K    +W ++
Sbjct: 264 LMVGKSIHGYAIRA--GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKT-VVSWNSM 320

Query: 265 LN 266
           ++
Sbjct: 321 MD 322


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/443 (47%), Positives = 290/443 (65%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  Q  +I     CG +D A K F+EMPERD ++W++M+A +A+ G   EAL LF  
Sbjct: 116 DSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQR 175

Query: 80  MQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ +  VK +EV ++SV+SA + LG L+ G+W   +I RN L+ TV+LGTALVDM+S+CG
Sbjct: 176 MQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + ++M  F  M ERNV TWT++I GLA++G   ++L +F  M+  G +P+ VTF  VL 
Sbjct: 236 CIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV EG   F+S+R EYG+EP  EHYGC+VDL GRAG L+EA   ++ MP++P++
Sbjct: 296 ACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNS 355

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL AC  +   E+ E    K+ EL++ + G YVLLSN+Y     W     VR  M
Sbjct: 356 IIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSM 415

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + K + K PGCS+I V+  +HEF AGD  HP++  I   L  +   LK+ GY  + + V+
Sbjct: 416 REKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVL 475

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +DIEEEEKE TL  HSEK+A+AF L+  K+   IR++KNLR+C DCH   K  S VF RE
Sbjct: 476 FDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           II+RDRNRFHHF +G CSC+ YW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 14/268 (5%)

Query: 29  MISACAKCGDVDL--ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           ++ +CA      L  AR +FD +   D  A+N ++  +A    S         M +  V 
Sbjct: 26  LLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MTMAGVS 84

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   VL AC     L  G   H  + +      V +   L+  Y  CG ++ A+  
Sbjct: 85  PDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKA 141

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGL 205
           F  M ER++ +W+S+I   A NG G ++L LF  M+  G V+P+EV  +SV+    ++G 
Sbjct: 142 FEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGD 201

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +E G+     + R  G+E  +     LVD++ R G ++E++ V ++M  + +   W AL+
Sbjct: 202 LELGKWIRGFISRN-GLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGER-NVLTWTALI 259

Query: 266 NACRMYKNTEMGELASRKLVELETKNHG 293
           N   ++     G  A    +  E +NHG
Sbjct: 260 NGLAVH-----GRSAEALRMFYEMRNHG 282


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/440 (46%), Positives = 296/440 (67%), Gaps = 1/440 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +  Q +++   A CGDV  A K+FD+MPE+D +AWN+++ G+A+ GK  EAL L+  M  
Sbjct: 23  IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 82

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K +  ++VS+LSAC  +GAL  G+  HVY+ +  L   +     L+D+Y++CG + +
Sbjct: 83  KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 142

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCC 201
           A   F  M ++N  +WTS+I GLA+NG G++++ELF  M+   G+ P E+TFV +L  C 
Sbjct: 143 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 202

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G+V+EG E+F  MR EY IEP +EH+GC+VDL  RAG++ +A + I  MPM+P+   W
Sbjct: 203 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 262

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL AC ++ ++++ E A  ++++LE  + G YVLLSN+YA  + W  V  +R+ M   
Sbjct: 263 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 322

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK+PG S++EV   VHEF  GD++HP+ + I   L E++ RL+  GYV   + V  D+
Sbjct: 323 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 382

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE+ +  HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SKV+NREI+V
Sbjct: 383 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 442

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR+RFHHFK G CSC+ YW
Sbjct: 443 RDRSRFHHFKNGSCSCQDYW 462



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           G   H  + R+     + +  +L+ +Y+ CG++  A   F  M E+++  W SVI G A 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
           NG  E++L L++ M   G++P+  T VS+L  C  +G +  G+     M +  G+   L 
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VGLTRNLH 125

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               L+DLY R GR++EA  + ++M  K ++ +W +L+
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLI 162


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 307/437 (70%), Gaps = 5/437 (1%)

Query: 29  MISACAKCG--DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI--HD 84
           M+ + AK G  D+++ARK+FD M ERD ++WN+M+A YAQ G S EA+ L+  M      
Sbjct: 239 MLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 297

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           +K N V++ +VL AC H GA+  G+  H  + R  L+  V +GT++VDMYSKCG +  A 
Sbjct: 298 IKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMAS 357

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +KE+N+ +W+++I G  M+G G+++LE+F+ MK++G+RPN +TF+SVL  C   G
Sbjct: 358 RAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAG 417

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L++EGR  +++M++E+GIE  +EHYGC+VDL GRAG LDEA  +I +M +KP A  WGAL
Sbjct: 418 LLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGAL 477

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L+ACR++KN E+ E++ ++L EL+  N G YVLLSNIYAE++ W  V  +R ++K + ++
Sbjct: 478 LSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIE 537

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PG S  E+  +++ F+ GD++HP++ EI   L ++  R++ AGYV NT  V++D++EE
Sbjct: 538 KPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEE 597

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  L  HSEK+A+AF L++      I I+KNLRVC DCH   K I+K+  REII+RD 
Sbjct: 598 EKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDL 657

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHFK+G CSC+ YW
Sbjct: 658 QRFHHFKDGLCSCRDYW 674



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 79/133 (59%), Gaps = 1/133 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +V   T+++   +KCG V++A + F ++ E++ ++W+AM+ GY   G+ +EAL +F  
Sbjct: 334 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTE 393

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   ++ N ++ +SVL+AC+H G LD+GR W +   +   ++  V     +VD+  + G
Sbjct: 394 MKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAG 453

Query: 139 NMNKAMDFFWGMK 151
            +++A      MK
Sbjct: 454 CLDEAYSLIKEMK 466


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/453 (45%), Positives = 305/453 (67%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  +  G+ E   VC T +I+    C ++D AR++FD++ E   + +NAM+ GYA+  +
Sbjct: 144 HCLAIKLGLSENVYVCPT-LINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSR 202

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  +Q  ++K  +V+M+SVLS+C  LGALD G+W H Y+++N     V + TA
Sbjct: 203 PNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTA 262

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMY+KCG+++ A+  F  M  R+   W+++I   A++G G K++ LF  M++AG  P+
Sbjct: 263 LIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPD 322

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+TF+ +L  C   GLVEEG E+F  MR +YG+ P ++HYGC+VDL GRAGRL+EA + I
Sbjct: 323 EITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFI 382

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
             +P++P    W  LL+AC  + N E+G+    ++ EL+  + G Y++LSN+ A +  W+
Sbjct: 383 VGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWE 442

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  VR++M  +GV K+PGCS +EV+  VHEFF+GD  H    ++   L E+ + LKL G
Sbjct: 443 DVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVG 502

Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV NT+ V + D+E+EEKE TL  HSEK+AI FGL++   G  IR+VKNLRVC DCH   
Sbjct: 503 YVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAA 562

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+IS +F+R+II+RD  RFHHFK+GKCSC+ YW
Sbjct: 563 KLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 125/249 (50%), Gaps = 5/249 (2%)

Query: 22  DVVCQTAMISACA---KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           D+   T  I+ C+       +  A  +FD++P+ D + +N M  GYA+      A  LF 
Sbjct: 51  DLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFT 110

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +    +  ++ +  S+L AC    AL++GR  H    +  L   V +   L++MY+ C 
Sbjct: 111 QILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACN 170

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M+ A   F  + E  V T+ ++I G A      ++L LF  ++   ++P +VT +SVL 
Sbjct: 171 EMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLS 230

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C ++G ++ G+   + +++  G   +++    L+D+Y + G LD+A+ V   M ++   
Sbjct: 231 SCALLGALDLGKWMHEYVKKN-GFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVR-DT 288

Query: 259 GAWGALLNA 267
            AW A++ A
Sbjct: 289 QAWSAMIMA 297



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 39/227 (17%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS---KCGNMNKAM 144
           N    +S+L  CT L  L Q      +  +  L   +++ T  ++  S      +M  A 
Sbjct: 19  NTTHPLSLLPKCTSLRELKQ---LQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAH 75

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  + + ++  + ++  G A      ++  LF+ +  +G+ P++ TF S+L+ C    
Sbjct: 76  HLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCK 135

Query: 205 LVEEGRE----------------------------HFDSMRREYGI--EPWLEHYGCLVD 234
            +EEGR+                              D  RR +    EP +  Y  ++ 
Sbjct: 136 ALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMIT 195

Query: 235 LYGRAGRLDEALDVINKMP---MKPHAGAWGALLNACRMYKNTEMGE 278
            Y R  R +EAL +  ++    +KP      ++L++C +    ++G+
Sbjct: 196 GYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGK 242


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/441 (45%), Positives = 298/441 (67%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  Q A+I     CG +++A K+FDEM ERD ++W+ ++A +   G + EAL LF  MQ
Sbjct: 118 DIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177

Query: 82  IHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           + D V  +EV+M+SV+SA +HLG L+ GRW   +I R    ++V LGTAL+DM+S+CG++
Sbjct: 178 LEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSI 237

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           ++++  F  M  RNV TWT++I GL ++G   ++L +F  M+++GV+P+ VTF  VL  C
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVAC 297

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV+EG + F+S+R+ YG++P L+HYGC+VD+ GRAG L+EA D + +MPMKP++  
Sbjct: 298 SHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSII 357

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W  LL AC  + N  + E    K+ ++ +  +G  VLLSN+Y  +  W    ++R  M+ 
Sbjct: 358 WRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMRE 417

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           K + K PGCS I VD+ +HEF +GD +HP+  +I   L  I   L+  GY+  T  V++D
Sbjct: 418 KRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHD 477

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           IEEEE+E +L  HSEK+A+AF ++S+K+   IRI+KNLR+C+DCH   K IS  F R+II
Sbjct: 478 IEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKII 537

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RDRNRFHHF++G CSC  YW
Sbjct: 538 IRDRNRFHHFEKGLCSCHDYW 558



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 12/246 (4%)

Query: 26  QTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           +T ++S  A   + +  AR +F  +P  D IA+N ++  +++   S  +L  F  M+ + 
Sbjct: 24  RTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFPS-HSLSYFFSMRSNG 82

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           + L+  +   VL AC+ L         H  I +  L   + +  AL+ +Y  CG++  A+
Sbjct: 83  IPLDNFTFPFVLKACSRL---QINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAV 139

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVV 203
             F  M ER+  +W++VI     NG   ++L+LF  M+ +  V P+EVT +SV+     +
Sbjct: 140 KVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHL 199

Query: 204 GLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           G +E GR    F   R  +G+   L     L+D++ R G +DE++ V  KM ++ +   W
Sbjct: 200 GDLELGRWVRAFIG-RLGFGVSVALG--TALIDMFSRCGSIDESIVVFEKMAVR-NVLTW 255

Query: 262 GALLNA 267
            AL+N 
Sbjct: 256 TALING 261


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/460 (45%), Positives = 292/460 (63%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G L    + F       V+  TAMI+   K G V+LA ++F EM  R  + WNAM+
Sbjct: 176 YVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMI 235

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGY + G++ + L LF  M    VK N +S+ SVL  C++L AL  G+  H  + +  L 
Sbjct: 236 AGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLS 295

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
              T GT+LV MYSKCG++  A + F  +  ++V  W ++I G A +GAG+K+L LF  M
Sbjct: 296 SDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEM 355

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K+ G++P+ +TFV+VL  C   GLV+ G ++F++MRR++GIE   EHY C+VDL GRAG+
Sbjct: 356 KKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGK 415

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L EA+D+I  MP KPH   +G LL ACR++KN  + E A++ L+EL+      YV L+N+
Sbjct: 416 LSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANV 475

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA    WD V ++R+ MK   V K+PG S IE++  VH F + D  HP    I   L ++
Sbjct: 476 YAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDL 535

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
            +++KLAGYV +   V++D+ EE KE  L  HSEK+AIAFGL+ +  GVPIR+ KNLRVC
Sbjct: 536 EKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVC 595

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH  TK IS +  REIIVRD  RFHHFK+G CSC+ YW
Sbjct: 596 GDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 60/322 (18%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA-QCGKSREALHLF--- 77
           +V+    +I++  +CGD+D A ++F++M  +  + WN++LA +A + G    A  LF   
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI 99

Query: 78  ----------------HLMQIHDVK-------LNEV-SMVSVLSACTHLGALDQGR---- 109
                           H + +HD +       L +V S  +++SA   +G + + R    
Sbjct: 100 PQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFS 159

Query: 110 ---------WAHV---YIERNRLKM-----------TVTLGTALVDMYSKCGNMNKAMDF 146
                    W+ +   Y+    L             +V   TA++  Y K G +  A   
Sbjct: 160 AMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERL 219

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  R + TW ++I G   NG  E  L LF  M + GV+PN ++  SVL GC  +  +
Sbjct: 220 FQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSAL 279

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           + G++    +  +  +         LV +Y + G L +A ++  ++P K     W A+++
Sbjct: 280 QLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK-DVVCWNAMIS 337

Query: 267 ACRMYKNTEMGELASRKLVELE 288
               Y     G+ A R   E++
Sbjct: 338 G---YAQHGAGKKALRLFDEMK 356


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/437 (47%), Positives = 302/437 (69%), Gaps = 5/437 (1%)

Query: 29  MISACAKCGDVDL--ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI--HD 84
           +I A AK G  DL  ARK+FD M +RD ++WN M+A YAQ G S EAL L+  M I   D
Sbjct: 233 IIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGD 291

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V+ N V++ +VL AC H GA+  G+  H  + R  L+  V +GT++VDMYSKCG +  A 
Sbjct: 292 VRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAW 351

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +K +N+ +W+++I G  M+G G+++L +F+ M+++G++PN +TF++VL  C   G
Sbjct: 352 KAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAG 411

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L+ EGR  +++M+ E+GIEP +EHYGC+VDL GRAG LDEA  +I +M +KP A  WGAL
Sbjct: 412 LLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGAL 471

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L+ACR+YKN E+ ++ + +L EL+  N G YVLLSNIYAE+  W  V  +R ++K +G++
Sbjct: 472 LSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIE 531

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PG S +E+  + H F+ GD++HP+Y EI   L ++  R+  AGYV NT  V++D++ E
Sbjct: 532 KPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVE 591

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           E+E  L  HSEK+A+AF L++  +G  I ++KNLRVC DCH   K+I+K+  REII+RD 
Sbjct: 592 ERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDL 651

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHFK+G CSC  YW
Sbjct: 652 KRFHHFKDGLCSCGDYW 668



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +V   T+++   +KCG V++A K F ++  ++ ++W+AM+AGY   G  +EALH+F  
Sbjct: 328 EDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTD 387

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   +K N ++ ++VL+AC+H G L +GR W +       ++  V     +VD+  + G
Sbjct: 388 MRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAG 447

Query: 139 NMNKAMDFFWGMK 151
            +++A      MK
Sbjct: 448 CLDEAYGLIKEMK 460



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 9/262 (3%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            G+   D  C +A++     C     AR+ FDE+P  +P+   AM +G  +       L 
Sbjct: 117 SGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLS 176

Query: 76  LFHLMQIHDVK--LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           +F  M        ++E + +  LSA   +         H  + +  L     +   ++D 
Sbjct: 177 IFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTIIDA 236

Query: 134 YSKCG--NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPN 189
           Y+K G  ++  A   F  M +R+V +W ++I   A NG   ++L L+S M   G  VR N
Sbjct: 237 YAKGGGHDLGAARKLF-DMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCN 295

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            VT  +VL  C   G ++ G+   + + R  G+E  +     +VD+Y + G+++ A    
Sbjct: 296 AVTLSAVLLACAHAGAIQTGKRIHNQVVR-MGLEDNVYVGTSVVDMYSKCGKVEMAWKAF 354

Query: 250 NKMPMKPHAGAWGALLNACRMY 271
            K+  K +  +W A++    M+
Sbjct: 355 QKIKGK-NILSWSAMIAGYGMH 375


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/430 (47%), Positives = 296/430 (68%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           +C   G +  AR +F+ MP    + W+AM+ GY + G S +A+ LF  MQ+  V+ +EV+
Sbjct: 182 SCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVT 241

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           ++ VL+A   LGAL+  RW   ++ER  +  +VTL  AL+D  +KCG+++ A+  F GM+
Sbjct: 242 VIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGME 301

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           ER V +WTSVI  LAM G G++++ +F  MK  GV P++V F+ VL  C   G+V+EGR 
Sbjct: 302 ERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRG 361

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +FDSM+ EYGIEP +EHYGC+VD++GRAG +++ L+ +  MPMKP+   W  L+ ACR +
Sbjct: 362 YFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAH 421

Query: 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSV 331
              E+GE  +R L+     +   YV+LSN+YA ++ W     +R+ M  +G+KK+PGCS+
Sbjct: 422 GRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSL 481

Query: 332 IEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLC 391
           +E+D EVHEF AGDE+HP+Y EI  M+ E+SR L+  G++A T+ V+ D++EE+KE  L 
Sbjct: 482 VELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQ 541

Query: 392 KHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451
            HSEK+AIAF L+    G  +R+VKNLRVC DCH   K IS+V+NREI+VRDR+RFH FK
Sbjct: 542 WHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFK 601

Query: 452 EGKCSCKGYW 461
           +G CSCK +W
Sbjct: 602 DGSCSCKDFW 611



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 9/159 (5%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +GI +   +C  A+I   AKCGDVD A  +F+ M ER  ++W +++   A  G+ +EA+ 
Sbjct: 268 EGIGKSVTLCN-ALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVG 326

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT----ALV 131
           +F  M+   V  ++V+ + VL+AC+H G +D+GR    Y +  + +  +         +V
Sbjct: 327 VFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRG---YFDSMKTEYGIEPKIEHYGCMV 383

Query: 132 DMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNG 169
           DM+ + G + + ++F   M  + N   W +++     +G
Sbjct: 384 DMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHG 422


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/443 (46%), Positives = 296/443 (66%), Gaps = 3/443 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++   AM+   AK   +D A+K+FD +P+RD ++WN ++ GY Q G + EA+ +++ M 
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMH 363

Query: 82  IHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            H+ +K  + + VSVL A ++LG L QG   H    +  L + V + T L+D+Y+KCG +
Sbjct: 364 NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKL 423

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +AM  F  M  R+   W ++I GL ++G G K+L LFS M+Q  ++P+ VTFVS+L  C
Sbjct: 424 VEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAAC 483

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV++GR  FD M+  YGI P  +HY C+VD+ GRAG+LDEA + I  MP+KP +  
Sbjct: 484 SHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAV 543

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL ACR++ N EMG++AS+ L EL+ +N G YVL+SN+YA+   WD V  VR +++ 
Sbjct: 544 WGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRR 603

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDET--HPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + ++K PG S +EV   V  F++G +T  HP++ EI+  L ++  ++K AGYV + + V+
Sbjct: 604 QNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVL 663

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+EE+EKE  L  HSE++AIAFG+I+   G P+ I KNLRVC DCH  TK ISK+  RE
Sbjct: 664 QDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITERE 723

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHFK+G CSC  +W
Sbjct: 724 IIVRDANRFHHFKDGHCSCGDFW 746



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 122/239 (51%), Gaps = 4/239 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+  P+V    +++ A  + G V  A ++FDEMPERD  AWNAML+G  +  ++ +A+ L
Sbjct: 96  GLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTL 155

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
              M    V  + V++ SVL  C  LG        HVY  ++ L   + +  AL+D+Y K
Sbjct: 156 LGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGK 215

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G + +A   F GM  R++ TW S+I      G    ++ELF  M ++GV P+ +T VS+
Sbjct: 216 LGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSL 275

Query: 197 LRGCCVVGLVEEGRE--HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
                  G  E G +  H    RR + +   +     +VD+Y +  ++D A  V + +P
Sbjct: 276 ASAVAQCG-DELGAKSVHCYVRRRGWDVGDIIAG-NAMVDMYAKMSKIDAAQKVFDNLP 332


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 297/437 (67%), Gaps = 4/437 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+++ A  +F  +  +D I+WN ++ GY      +EAL LF  M     K 
Sbjct: 275 ALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKP 334

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+S+LSAC HLGA+D GRW HVYI++ RLK      +L T+L+DMY+KCG++  A 
Sbjct: 335 NDVTMLSILSACAHLGAIDIGRWIHVYIDK-RLKGVTNASSLRTSLIDMYAKCGDIEAAQ 393

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  R++ +W ++I G AM+G    + ++FS M++ G+ P+++TFV +L  C   G
Sbjct: 394 QVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSG 453

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F SM R+Y + P LEHYGC++DL G +G   EA  +IN M M+P    W +L
Sbjct: 454 MLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSL 513

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+GE  ++ L+++E +N G+YVLLSNIYA ++ W+ V   R ++  KG+K
Sbjct: 514 LKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMK 573

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 574 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 634 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 693

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHF++G+CSC  YW
Sbjct: 694 TRFHHFRDGECSCNDYW 710



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 154/272 (56%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   QKV D     DVV  TA+I+  A  G ++ A KMFDE+P +D ++WNA 
Sbjct: 147 MYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAX 206

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  +EAL LF  M   +V+ +E +MV+VLSAC   G+++ GR  H +I  +  
Sbjct: 207 ISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGF 266

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+YSKCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 267 GXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQD 326

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G +PN+VT +S+L  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 327 MLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKC 386

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V + M +     +W A++    M+
Sbjct: 387 GDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMH 417



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 37/290 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q +  G+H  +    + ++  C      D    A  +FD + E   + WN M  G+A 
Sbjct: 22  HAQMIKTGLHNTNYAL-SKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHAL 80

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYI 115
                 AL L+  M    +  N  +   +L +C    A  +G+  H           +YI
Sbjct: 81  SSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYI 140

Query: 116 ERNRLKMTVTLG--------------------TALVDMYSKCGNMNKAMDFFWGMKERNV 155
             + + M V  G                    TAL+  Y+  G +  A   F  +  ++V
Sbjct: 141 HTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDV 200

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W + I G A  G  +++LELF  M +  VRP+E T V+VL  C   G +E GR+   S
Sbjct: 201 VSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQ-VHS 259

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              ++G    L+    L+DLY + G L+ A  +   +  K    +W  L+
Sbjct: 260 WINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKD-VISWNTLI 308



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     + +T++I   AKCGD++ A+++FD M  R   +WNAM+ G+A  G+
Sbjct: 361 YIDKRLKGVTNASSL-RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGR 419

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGT 128
           +  A  +F  M+ + ++ ++++ V +LSAC+H G LD GR     + R+ +L   +    
Sbjct: 420 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYG 479

Query: 129 ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGE 172
            ++D+    G   +A      M+ E +   W S++    M+G  E
Sbjct: 480 CMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVE 524


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/467 (47%), Positives = 309/467 (66%), Gaps = 7/467 (1%)

Query: 1   MYAELGCLGYCQKVFD--GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           +Y  LG L   ++VFD  G    DVV    M+S   KCGD++ AR++F  MPER  ++W+
Sbjct: 125 LYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWS 184

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+    + G+  EAL +F  M  +  K + V +VSVL  C HLGAL++GRW H +++  
Sbjct: 185 AMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAE 244

Query: 119 RL---KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           RL      V L TALVDMY KCG MN+A   F G++  +V  W ++IGGLAMNG G+++L
Sbjct: 245 RLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRAL 304

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           ELF  M   G  PNE TFV  L  C   G V+EG + F SMR ++GIEP  EHYGCL DL
Sbjct: 305 ELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMR-DHGIEPRREHYGCLADL 363

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
            GRAG L+EA  V+  MPM+PHA  WGAL+++C M+ N  +GE   +KL+ELE  + G Y
Sbjct: 364 LGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRY 423

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
           V L N+YA +  W+    +R++M+ +G KK  G S IE +  VHEF +GD  HP+   I 
Sbjct: 424 VALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRLIY 483

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIE-EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
            +L ++ +RL+L GYV +T+ V+ D++ EE+K +TL  HSE++A+AFG++++   +PIRI
Sbjct: 484 ALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLALAFGILNIPHDMPIRI 543

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VKNLRVC DCH   K++SK++ REIIVRDR+RFH F++G CSC  +W
Sbjct: 544 VKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCNDFW 590


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/443 (45%), Positives = 299/443 (67%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+  Q A+I     CG +++A K+FDEM ERD ++W+ ++A +   G + EAL LF  
Sbjct: 116 DSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEK 175

Query: 80  MQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ+ D V  +EV+M+SV+SA +HLG L+ GRW   +I R  L ++V LGTAL+DM+S+CG
Sbjct: 176 MQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCG 235

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++++++  F  M  RNV TWT++I GL ++G   ++L +F  M+++GV+P+ VTF  VL 
Sbjct: 236 SIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLV 295

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG + F+S+R+ Y ++P L+HYGC+VD+ GRAG L+EA D + +MPMKP++
Sbjct: 296 ACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNS 355

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL AC  + N  + E    K+ ++ +  +G  VLLSN+Y  +  W    ++R  M
Sbjct: 356 IIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKM 415

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + K + K PGCS I VD+ +HEF +GD +HP+  +I   L  I   L+  GY+  T  V+
Sbjct: 416 REKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVL 475

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +DIEEEE+E +L  HSEK+A+AF ++S+K+   IRI+KNLR+C+DCH   K IS  F R+
Sbjct: 476 HDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERK 535

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           II+RDRNRFHHF++G CSC  YW
Sbjct: 536 IIIRDRNRFHHFEKGLCSCHDYW 558



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 8/244 (3%)

Query: 26  QTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           +T ++S  A   + +  AR +F  +P  D IA+N ++  +++   S    + F  M+ + 
Sbjct: 24  RTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFPSHSLFYFFS-MRSNG 82

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           + L+  +   VL AC+ L         H  I +  L   + +  AL+ +Y  CG++  A+
Sbjct: 83  IPLDNFTFPFVLKACSRLQI---NLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAV 139

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVV 203
             F  M ER+  +W++VI     NG   ++L+LF  M+ +  V P+EVT +SV+     +
Sbjct: 140 KVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHL 199

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G +E GR     + R  G+   +     L+D++ R G +DE++ V  KM ++ +   W A
Sbjct: 200 GDLELGRWVRAFIGR-LGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTA 257

Query: 264 LLNA 267
           L+N 
Sbjct: 258 LING 261


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/451 (44%), Positives = 299/451 (66%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +++FD +   +V     MI+  A+CG +  A+ +FD+MP+RDP++W AM+AGY+Q G S
Sbjct: 326 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 385

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL LF LM+    +LN  S  S LS C  + AL+ G+  H  + +   +    +G AL
Sbjct: 386 YEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNAL 445

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + MY KCG++ +A D F  M  +++ +W ++I G + +G GE++L  F  MK+ G++P++
Sbjct: 446 LLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDD 505

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T V+VL  C   GLV++GR++F +M ++YG+ P  +HY C+VDL GRAG L+EA +++ 
Sbjct: 506 ATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMK 565

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            MP +P A  WG LL A R++ NTE+ E A+ K+  +E +N G YVLLSN+YA S  W  
Sbjct: 566 NMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGD 625

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V  +R  M+ KGVKK+PG S IE+  + H F  GDE HP  +EI   L ++  R+K AGY
Sbjct: 626 VGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGY 685

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
           V+ T+ V++D+EEEEKE  +  HSE++A+A+G++ +  G PIR++KNLRVC DCH+  K 
Sbjct: 686 VSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKY 745

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ++KV  R II+RD NRFHHFK+G CSC  YW
Sbjct: 746 MAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 131/258 (50%), Gaps = 18/258 (6%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           LG  +++F+ + E DV     ++S  A+ G VD AR++FD MPE++ ++WNA+L+ Y Q 
Sbjct: 137 LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQN 196

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
            K  EA  LF   +   +    VS   +L        + + R    + +  +++  V+  
Sbjct: 197 SKLEEACVLFGSRENWAL----VSWNCLLGGFVKKKKIVEAR---QFFDSMKVRDVVSWN 249

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T ++  Y++ G +++A   F      +V+TWT+++ G   N   E++ ELF  M +    
Sbjct: 250 T-IITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER--- 305

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            NEV++ ++L G      VE  +E FD M     +  W      ++  Y + G++ EA +
Sbjct: 306 -NEVSWNAMLAGYVQGERVEMAKELFDVMPCR-NVSTW----NTMITGYAQCGKISEAKN 359

Query: 248 VINKMPMKPHAGAWGALL 265
           + +KMP K    +W A++
Sbjct: 360 LFDKMP-KRDPVSWAAMI 376


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/440 (46%), Positives = 286/440 (65%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++IS  +KC  VD+A  +F  +  +  + WNAM+ GYAQ G   EAL+LF  MQ
Sbjct: 378 DVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQ 437

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            HD+K +  ++VSV++A   L    Q +W H    R  +   V + TAL+D ++KCG + 
Sbjct: 438 SHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQ 497

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M+ER+V TW ++I G   NG G ++L+LF+ M+   V+PNE+TF+SV+  C 
Sbjct: 498 TARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS 557

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG  +F+SM+  YG+EP ++HYG +VDL GRAGRLD+A   I  MP+KP     
Sbjct: 558 HSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVL 617

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GA+L ACR++KN E+GE  + +L +L+  + G +VLL+N+YA +  WD+V  VR  M+ K
Sbjct: 618 GAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKK 677

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K PGCS++E+  EVH F++G   HP+   I   L  +   +K AGYV +TN + +D+
Sbjct: 678 GIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDV 736

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EE+ KE  L  HSE++AIAFGL++ + G  I I KNLRVC DCH+ TK IS V  REIIV
Sbjct: 737 EEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIV 796

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK G CSC  YW
Sbjct: 797 RDLRRFHHFKNGICSCGDYW 816



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + ++   TA+++  AKC  ++ A KMF+ MP+RD ++WN ++AGYAQ G +R A+ +   
Sbjct: 174 QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQ 233

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ    K + +++VSVL A   L AL  GR  H Y  R   +  V + TA++D Y KCG+
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGS 293

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F GM  RNV +W ++I G A NG  E++   F  M   GV P  V+ +  L  
Sbjct: 294 VRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHA 353

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +G +E GR +   +  E  I   +     L+ +Y +  R+D A  V   +  K    
Sbjct: 354 CANLGDLERGR-YVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKT-VV 411

Query: 260 AWGALL 265
            W A++
Sbjct: 412 TWNAMI 417



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 43/280 (15%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TAM+    KCG V  AR +F  M  R+ ++WN M+ GYAQ G+S EA   F  M    V+
Sbjct: 282 TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVE 341

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
              VSM+  L AC +LG L++GR+ H  ++  ++   V++  +L+ MYSKC  ++ A   
Sbjct: 342 PTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASV 401

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG------- 199
           F  +K + V TW ++I G A NG   ++L LF  M+   ++P+  T VSV+         
Sbjct: 402 FGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVT 461

Query: 200 ---------------------CCVV-------GLVEEGREHFDSMRREYGIEPWLEHYGC 231
                                C  +       G ++  R+ FD M+  + I      +  
Sbjct: 462 RQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNA 516

Query: 232 LVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
           ++D YG  G   EALD+ N+M    +KP+   + +++ AC
Sbjct: 517 MIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAAC 556



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 116/243 (47%), Gaps = 4/243 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT +IS   K   +  A ++F+ +  +  + ++ ML GYA+    R+A+  +  M+  +V
Sbjct: 79  QTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEV 138

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
                    +L        L +GR  H  +  N  +  +   TA+V++Y+KC  +  A  
Sbjct: 139 MPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYK 198

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M +R++ +W +V+ G A NG   +++++   M++AG +P+ +T VSVL     +  
Sbjct: 199 MFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKA 258

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  GR  H  + R   G E  +     ++D Y + G +  A  V   M  + +  +W  +
Sbjct: 259 LRIGRSIHGYAFRA--GFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSR-NVVSWNTM 315

Query: 265 LNA 267
           ++ 
Sbjct: 316 IDG 318


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/442 (46%), Positives = 299/442 (67%), Gaps = 3/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EPD++   ++ +  AKCG V +AR  FD+M   + + WNAM++GYA+ G + EA+ LF  
Sbjct: 304 EPDLL--ISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQE 361

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   +++ + +++ S + AC  +G+LD  +W   YI +   +  V + TAL+DM++KCG+
Sbjct: 362 MISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGS 421

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A + F    +++V  W+++I G  ++G G+ +++LF  MKQAGV PN+VTFV +L  
Sbjct: 422 VDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTA 481

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVEEG E F SM+  YGIE   +HY C+VDL GR+G L+EA D I  MP++P   
Sbjct: 482 CNHSGLVEEGWELFHSMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVS 540

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL AC++Y++  +GE A+ +L  L+  N G YV LSN+YA S+ WD V  VR +M+
Sbjct: 541 VWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMR 600

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K  G S+IE++ ++  F  GD++HPR+ EI   L  + RRLK AG++ +   V++
Sbjct: 601 EKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLH 660

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+ +EEKE+TLC HSE++AIA+GLIS   G  +RI KNLR C +CH  TK+ISK+ NREI
Sbjct: 661 DLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREI 720

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHFK G CSC+ YW
Sbjct: 721 VVRDANRFHHFKNGVCSCRDYW 742



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 138/254 (54%), Gaps = 4/254 (1%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++F    E DV  Q  +++  AKCG V+ AR +F+ + +R+ ++W +M++GY Q G   E
Sbjct: 194 QIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL +F  M+  +VK + +++VSVL A T +  L+QG+  H  + +  L+    L  +L  
Sbjct: 254 ALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTA 313

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+KCG +  A  FF  M+  NV  W ++I G A NG   +++ LF  M    +R + +T
Sbjct: 314 MYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSIT 373

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRR-EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
             S +  C  VG ++  +   D + + EY  + ++     L+D++ + G +D A +V ++
Sbjct: 374 VRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVN--TALIDMFAKCGSVDLAREVFDR 431

Query: 252 MPMKPHAGAWGALL 265
             +      W A++
Sbjct: 432 T-LDKDVVVWSAMI 444



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 139/271 (51%), Gaps = 7/271 (2%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q V  G+ E   +  T  ++A    G++  ARK+FDE PE     WNA++ GY+    
Sbjct: 91  HAQLVVSGLVESGFLV-TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNF 149

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             +A+ ++  MQ   V  +  ++  VL AC+ +  L+ G+  H  I R   +  V +   
Sbjct: 150 FGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNG 209

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV +Y+KCG + +A   F G+ +RN+ +WTS+I G   NG   ++L +F  M+Q  V+P+
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 190 EVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            +  VSVLR    V  +E+G+  H   ++     EP L     L  +Y + G++  A   
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDL--LISLTAMYAKCGQVMVARSF 327

Query: 249 INKMPMKPHAGAWGALLN--ACRMYKNTEMG 277
            ++M + P+   W A+++  A   Y N  +G
Sbjct: 328 FDQMEI-PNVMMWNAMISGYAKNGYTNEAVG 357


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/443 (45%), Positives = 298/443 (67%), Gaps = 3/443 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++   A++   AK  +++ A++MFD MP +D ++WN ++ GY Q G + EA+  +  MQ
Sbjct: 305 DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ 364

Query: 82  IHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            H+ +K  + + VSVL A +HLGAL QG   H    +  L + V +GT L+D+Y+KCG +
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKL 424

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +AM  F  M  R+   W ++I GL ++G G ++L LFS M+Q G++P+ VTFVS+L  C
Sbjct: 425 AEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAAC 484

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV++GR  FD M+  Y I P  +HY C+ D+ GRAG+LDEA + I  MP+KP +  
Sbjct: 485 SHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAV 544

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL ACR++ N EMG++AS+ L EL+ +N G YVL+SN+YA+   WD V  VR +++ 
Sbjct: 545 WGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRR 604

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDET--HPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + ++K PG S IEV R V+ F++G++T  HP++ EI+  L  +  +++  GYV++ + V+
Sbjct: 605 QNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVL 664

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+E++EKE  L  HSE++AIAFG+I+     P+ I KNLRVC DCH+ TK IS++  RE
Sbjct: 665 QDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITERE 724

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHFK+G CSC  +W
Sbjct: 725 IIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 9/254 (3%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+  P V    +++ A  + G +  A K+FDEM ERD  AWNAML+G  +  ++ EA+ L
Sbjct: 97  GLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGL 156

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M    V  + V++ SVL  C  LG        HVY  ++ L   + +  AL+D+Y K
Sbjct: 157 FGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGK 216

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G + +A   F GM+ R++ TW S+I G    G    +L++F  M+ +GV P+ +T VS+
Sbjct: 217 LGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSL 276

Query: 197 LRGCCVVGLVEEGRE----HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
                  G   +GR     H   MRR + ++  +     +VD+Y +   ++ A  + + M
Sbjct: 277 ASAIAQGG---DGRSAKSLHCYVMRRGWDVDDIIAG-NAIVDMYAKLSNIEAAQRMFDSM 332

Query: 253 PMKPHAGAWGALLN 266
           P++    +W  L+ 
Sbjct: 333 PVQDSV-SWNTLIT 345


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/436 (48%), Positives = 292/436 (66%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           Q +++   +  G +  A ++F+ M  RD +AWN+++ G+A  G   EAL L+  M    V
Sbjct: 174 QNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGV 233

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + +  +MVS+LSAC  LGAL  G   H+Y+ +  L        AL+D+YSKCGN   A  
Sbjct: 234 EPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQK 293

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M+ER+V +WTS+I GLA+NG G ++L+LF  +++ G++P+E+TFV VL  C   G+
Sbjct: 294 VFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGM 353

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++EG  +F  M+ EYGI P +EH+GC+VDL  RAG++ +A D I  MP+ P+A  W  LL
Sbjct: 354 LDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLL 413

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            AC ++ + E+GE+A  ++  LE ++ G +VLLSN+YA  + W  V NVR+IM  KGVKK
Sbjct: 414 GACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKK 473

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG S++E+   V+EF  GD +HP+  E   ML +I++ LK+ GYV  T  V+ DIEEEE
Sbjct: 474 TPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEE 533

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  H+EKVAIAF L++   G PIRI+KNLRVC DCH   K+ISKVF REIIVRDR+
Sbjct: 534 KETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRS 593

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSCK YW
Sbjct: 594 RFHHFKDGSCSCKDYW 609



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 6/239 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++S  A    +  A ++F+++   +   WN M+ G+A+      A+ LF  M      L
Sbjct: 77  ALVSLSAP---MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL 133

Query: 88  NEVSMVSVL-SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +      L  A   L  +  G   H  + RN       +  +LV MYS  G++  A   
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQV 193

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  R+   W SVI G A+NG   ++L L+  M   GV P+  T VS+L  C  +G +
Sbjct: 194 FEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGAL 253

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             G E       + G+         L+DLY + G   +A  V ++M  +    +W +L+
Sbjct: 254 ALG-ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERS-VVSWTSLI 310



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 46/206 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISAC--------------------------- 33
           +Y E+G  G          EPD     +++SAC                           
Sbjct: 224 LYREMGSEGV---------EPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHA 274

Query: 34  --------AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
                   +KCG+   A+K+FDEM ER  ++W +++ G A  G   EAL LF  ++   +
Sbjct: 275 SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGL 334

Query: 86  KLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           K +E++ V VL AC+H G LD+G  +     E   +   +     +VD+  + G +  A 
Sbjct: 335 KPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAY 394

Query: 145 DFFWGMK-ERNVYTWTSVIGGLAMNG 169
           D+   M    N   W +++G   ++G
Sbjct: 395 DYIRNMPVPPNAVIWRTLLGACTIHG 420


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/439 (45%), Positives = 298/439 (67%), Gaps = 1/439 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DVV   A+++  AK G ++ A  +FD++P +D I+WN ++ GY Q G + EA+  +++
Sbjct: 356 DKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNM 415

Query: 80  MQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   D   N+ + VS++ A +H+GAL QG   H  + +N L + V + T L+D+Y KCG
Sbjct: 416 MEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCG 475

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  AM  F+ +       W ++I  L ++G GE++L+LF  M    V+ + +TFVS+L 
Sbjct: 476 RLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLS 535

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG++ FD M++EYGI+P L+HYGC+VDL GRAG L++A +++  MP++P A
Sbjct: 536 ACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDA 595

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL+AC++Y N E+G LAS +L+E++++N G YVLLSNIYA ++ W+ VI VR + 
Sbjct: 596 SIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLA 655

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G++K PG S + V  +   F+ G++THP+Y EI   L  +S ++K  GYV + + V 
Sbjct: 656 RDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVY 715

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            DIEE+EKE  L  HSE++AIAFG+IS     PIRI KNLRVC DCH+ TK IS++  RE
Sbjct: 716 QDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISERE 775

Query: 439 IIVRDRNRFHHFKEGKCSC 457
           I+VRD NRFHHFK+G CSC
Sbjct: 776 IVVRDSNRFHHFKDGICSC 794



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 152/283 (53%), Gaps = 7/283 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV    A+I+  +K G +  A+ +FD+M  RD ++WN+++A Y Q      AL  F  
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCG 138
           MQ+  ++ + +++VS+ S  + L      R    + I R  L   V +G ALV+MY+K G
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVL 197
            MN A   F  +  ++  +W +++ G   NG   ++++ +++M++     PN+ T+VS++
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSII 433

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                VG +++G + H   ++    ++ ++    CL+DLYG+ GRL++A+ +  ++P + 
Sbjct: 434 PAYSHVGALQQGMKIHAKLIKNSLYLDVFVA--TCLIDLYGKCGRLEDAMSLFYEIP-RD 490

Query: 257 HAGAWGALLNACRMY-KNTEMGELASRKLVELETKNHGAYVLL 298
            +  W A++ +  ++ +  E  +L    L E    +H  +V L
Sbjct: 491 TSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSL 533



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 11/258 (4%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    E DV    +++   ++ G +D+A K+F +MP +D  +WNAM++G+ Q G +  A
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L + + M+   VK++ +++ S+L  C     +  G   H+++ ++ L   V +  AL++M
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINM 266

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           YSK G +  A   F  M+ R++ +W S+I     N     +L  F  M+  G+RP+ +T 
Sbjct: 267 YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV 326

Query: 194 VSVLRGCCVVGLVEEGREHFD-SMRREYGIEPWLEHY----GCLVDLYGRAGRLDEALDV 248
           VS+      +      R      +RRE     WL+        LV++Y + G ++ A  V
Sbjct: 327 VSLTSIFSQLSDQRISRSILGFVIRRE-----WLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 249 INKMPMKPHAGAWGALLN 266
            +++P K    +W  L+ 
Sbjct: 382 FDQLPRK-DTISWNTLVT 398



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 134/271 (49%), Gaps = 21/271 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH----LF 77
           ++V  T +I+     GD+ L+R  FD + +++  +WN++++ Y + GK  EA++    LF
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLF 112

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +     ++ +  +   +L AC    +L  G+  H  + +   +  V +  +LV +YS+ 
Sbjct: 113 SMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRY 169

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G ++ A   F  M  ++V +W ++I G   NG    +L + + MK  GV+ + +T  S+L
Sbjct: 170 GVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASIL 229

Query: 198 RGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C     V  G   H   ++  +G++  +     L+++Y + GRL +A  V ++M ++ 
Sbjct: 230 PVCAQSDDVINGVLIHLHVLK--HGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRD 287

Query: 257 HAGAWGALL----------NACRMYKNTEMG 277
              +W +++           A R +K  ++G
Sbjct: 288 LV-SWNSIIAAYEQNNDPSTALRFFKGMQLG 317


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/439 (47%), Positives = 306/439 (69%), Gaps = 5/439 (1%)

Query: 27  TAMISACAKCG--DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI-- 82
             M+ + AK G  D+++ARK+FD M ERD ++WN+M+A YAQ G S EA+ L+  M    
Sbjct: 91  NTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVG 149

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K N V++ +VL AC H GA+  G+  H  + R  L+  V +GT++VDMYSKCG +  
Sbjct: 150 GGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEM 209

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  +KE+N+ +W+++I G  M+G G+++LE+F+ MK++G+RPN +TF+SVL  C  
Sbjct: 210 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSH 269

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            GL++EGR  +++M++E+GIE  +EHYGC+VDL GRAG LDEA  +I +M +KP A  WG
Sbjct: 270 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 329

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           ALL+ACR++KN E+ E++ ++L EL+  N G YVLLSNIYAE+  W  V  +R ++K + 
Sbjct: 330 ALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRR 389

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           ++K PG S  E+  +++ F+ GD++HP++ EI   L ++  R++ AGYV NT  V++D++
Sbjct: 390 IEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLD 449

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           EEEKE  L  HSEK+A+AF L++      I I+KNLRVC DCH   K I+K+  REII+R
Sbjct: 450 EEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIR 509

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           D  RFHHFK+G CSC+ YW
Sbjct: 510 DLQRFHHFKDGLCSCRDYW 528



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 79/133 (59%), Gaps = 1/133 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +V   T+++   +KCG V++A + F ++ E++ ++W+AM+ GY   G+ +EAL +F  
Sbjct: 188 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTE 247

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   ++ N ++ +SVL+AC+H G LD+GR W +   +   ++  V     +VD+  + G
Sbjct: 248 MKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAG 307

Query: 139 NMNKAMDFFWGMK 151
            +++A      MK
Sbjct: 308 CLDEAYSLIKEMK 320



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK--LNEVSMVSVLSAC 99
           AR+ FDE+P+ +P+   AM +GY +      +L LF  M   D    ++E + +   SA 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 100 THLGALDQGRWA--HVYIERNRLKMTVTLGTALVDMYSKCG--NMNKAMDFFWGMKERNV 155
             +   D+G  A  H  I +   +    +   ++D Y+K G  ++  A   F  M ER+V
Sbjct: 63  ARVP--DRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDV 119

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQ--AGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
            +W S+I   A NG   +++ L+S M     G++ N V   +VL  C   G ++ G+ H 
Sbjct: 120 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGK-HI 178

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            +     G+E  +     +VD+Y + GR++ A     K+  K +  +W A++    M+
Sbjct: 179 HNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEK-NILSWSAMITGYGMH 235


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/453 (45%), Positives = 299/453 (66%), Gaps = 3/453 (0%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G+C K+  GI     V  TA+ +   +  ++  AR++FDE  E+   +WNAM++G  Q G
Sbjct: 156 GFCVKL--GIVSHSSV-STALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNG 212

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            +  A+ LF  MQ ++V  N V++ S+LSAC  +GAL  G W H  I+ NR +  V + T
Sbjct: 213 LTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVST 272

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL+DMY+KCG++  A + F  M E+N  TW ++I G  ++G G+++L+LF  M  + V+P
Sbjct: 273 ALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKP 332

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
             +TF+SVL  C   GLV+EG   F +M  ++G EP  EHY C+VD+ GRAG+L +AL+ 
Sbjct: 333 TGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEF 392

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I  MP++P    WGALL AC ++K+T +  +AS KL EL+ +N G YVL+SNIY+  + +
Sbjct: 393 IKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKY 452

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
            +  +VRQ+ K K + K PGC++IE+ +  H F +GD++HP+   I   L +++ ++  A
Sbjct: 453 PQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEA 512

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           G+   T  V++D+EEEEKE T+  HSEK+AIAFGLIS + G  IRI+KNLRVC DCH+ T
Sbjct: 513 GFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWT 572

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K +SK+  R I+VRD NRFHHFK+G CSC  YW
Sbjct: 573 KFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 122/241 (50%), Gaps = 2/241 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +IS  +KCG+V++AR +F E+ ++D I+ NAM++G+   G++ +++ LF  +     +
Sbjct: 70  TGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGER 129

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  ++V ++   +  G        H +  +  +    ++ TAL  +Y +   M  A   
Sbjct: 130 VSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQL 189

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F    E+ + +W ++I G   NG  + ++ LF  M++  V PN VT  S+L  C  +G +
Sbjct: 190 FDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGAL 249

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G E   S+ +    E  +     L+D+Y + G +  A ++ + MP K     W A+++
Sbjct: 250 SLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEV-TWNAMIS 307

Query: 267 A 267
            
Sbjct: 308 G 308



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 60  MLAGYAQCGKSREALHLFHLMQI-HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           M++G+ +     +++ +F  M + +  + +  ++++VL A   L  L  G        + 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
                V+L T L+ ++SKCG +  A   F  ++++++ +  ++I G   NG  E S+ LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 179 SLMKQAGVRPNEVTFVSVL 197
             +  +G R +  T V ++
Sbjct: 121 KELLSSGERVSSSTIVGLI 139


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/462 (45%), Positives = 305/462 (66%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G L   + +FD I   ++V  T+MI+   +  D   A ++FD M ERD I+WN++
Sbjct: 120 MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSI 179

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +A YAQ G S E++ +FH M +  ++  N V++ +VL AC H G+   G+  H  + +  
Sbjct: 180 IAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMG 239

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L+  V +GT+++DMY KCG +  A   F  M+E+NV +W++++ G  M+G  +++LE+F 
Sbjct: 240 LESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFY 299

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AGV+PN +TFVSVL  C   GL+EEG   F +M  E+ +EP +EHYGC+VDL GRA
Sbjct: 300 EMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRA 359

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I  M ++P    WGALL ACRM+KN ++GE+++RKL EL+ KN G YVLLS
Sbjct: 360 GYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLS 419

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA++  W+ V  +R +MK  G+ K PG S++++   VH F  GD  HP++ +I   L 
Sbjct: 420 NIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLE 479

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++S +L+  GYV +   V++D+  EEKE  L  HSEK+A+AFG+++   G  I I+KNLR
Sbjct: 480 KLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLR 539

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH   K ISK+ +REI+VRD  RFHHF++G CSC  YW
Sbjct: 540 VCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 118/284 (41%), Gaps = 75/284 (26%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
            +WN+++A  A+ G S EAL  F  M+   +K N  +    + +C+ L  L  GR AH  
Sbjct: 42  FSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQ 101

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNM-------------------------------NKA 143
                 +  + + +ALVDMYSKCG +                               ++A
Sbjct: 102 ALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRA 161

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGC-- 200
           +  F GM ER+V +W S+I   A NG   +S+E+F  M + G +  N VT  +VL  C  
Sbjct: 162 LRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAH 221

Query: 201 ---------------------------------CVVGLVEEGREHFDSMRREYGIEPWLE 227
                                            C  G VE  R+ FD M RE  ++ W  
Sbjct: 222 SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM-REKNVKSW-- 278

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPM---KPHAGAWGALLNAC 268
               +V  YG  G   EAL+V  +M M   KP+   + ++L AC
Sbjct: 279 --SAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAAC 320



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           YS   N+    + +  + + NV++W SVI  LA +G   ++L  FS M++  ++PN  TF
Sbjct: 22  YSNNPNLTTLFNKY--VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTF 79

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
              ++ C  +  +  GR+ H  ++   +G EP L     LVD+Y + G L +A  + +++
Sbjct: 80  PCAIKSCSALLDLHSGRQAHQQALI--FGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 137

Query: 253 PMKPHAGAWGALLNA 267
             + +  +W +++  
Sbjct: 138 SHR-NIVSWTSMITG 151


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/442 (45%), Positives = 293/442 (66%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    A++S    CGD+  A+ +F++MP+RD ++WN ++AG+ Q GK++ A   F +
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKM 605

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +K ++++   +L+AC    AL +GR  H  I        V +GT L+ MY+KCG+
Sbjct: 606 MQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGS 665

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + ++NVY+WTS+I G A +G G+++LELF  M+Q GV+P+ +TFV  L  
Sbjct: 666 IEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSA 725

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+EEG  HF SM+ E+ IEP +EHYGC+VDL+GRAG L+EA++ I KM ++P + 
Sbjct: 726 CAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSR 784

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL AC+++ N E+ E A++K +EL+  ++G +V+LSNIYA +  W  V  +R++M 
Sbjct: 785 VWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVML 844

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +GV K PG S IEVD +VH F++ D+THP+  EI   L  +   ++  GYV +T  V++
Sbjct: 845 DRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLH 904

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+ EKE  L  HSE++AI +GL+      PI I KNLRVC DCH  TK ISK+  R+I
Sbjct: 905 DVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQI 964

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I RD NRFHHFK+G CSC  +W
Sbjct: 965 IARDSNRFHHFKDGVCSCGDFW 986



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 147/249 (59%), Gaps = 4/249 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+   TA+I+   KCGD+  A K+FD +P RD + W +M+ G A+ G+ ++A +LF  
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V+ ++V+ VS+L AC H  AL+QG+  H  ++       + +GTA++ MY+KCG+
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGS 362

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A++ F  +K RNV +WT++I G A +G  +++   F+ M ++G+ PN VTF+S+L  
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGA 422

Query: 200 CCVVGLVEEGREHFDS-MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     ++ G++  D  +   YG +  +     L+ +Y + G L +A  V  K+  K + 
Sbjct: 423 CSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 259 GAWGALLNA 267
            AW A++ A
Sbjct: 480 VAWNAMITA 488



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 160/283 (56%), Gaps = 6/283 (2%)

Query: 8   LGYCQKVFDGIH----EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           LG  +++++ I     +PD+  +  +I+  AKCG+   A+++FD+M E+D  +WN +L G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y Q G   EA  L   M    VK ++ + VS+L+AC     +D+GR  +  I +      
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           + +GTAL++M+ KCG++  A   F  +  R++ TWTS+I GLA +G  +++  LF  M++
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV+P++V FVS+LR C     +E+G++    M +E G +  +     ++ +Y + G ++
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           +AL+V + +  + +  +W A++     +   +   L   K++E
Sbjct: 365 DALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 141/258 (54%), Gaps = 6/258 (2%)

Query: 12  QKVFDGIHE----PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           Q++ D I E     D   +TA++S  AKCG +  A ++F+++ +++ +AWNAM+  Y Q 
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQH 492

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
            +   AL  F  +    +K N  +  S+L+ C    +L+ G+W H  I +  L+  + + 
Sbjct: 493 EQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVS 552

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            ALV M+  CG++  A + F  M +R++ +W ++I G   +G  + + + F +M+++G++
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK 612

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+++TF  +L  C     + EGR    ++  E   +  +     L+ +Y + G +++A  
Sbjct: 613 PDKITFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671

Query: 248 VINKMPMKPHAGAWGALL 265
           V +K+P K +  +W +++
Sbjct: 672 VFHKLP-KKNVYSWTSMI 688



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 52  RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111
           +D    NA+L   ++ G+  EA+ +   +    +++   +  ++L  C     L  G   
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           + +I+++ ++  + +   L++MY+KCGN   A   F  M+E++VY+W  ++GG   +G  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
           E++ +L   M Q  V+P++ TFVS+L  C     V++GRE ++ + +  G +  L     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTA 251

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN----------ACRMYKNTE 275
           L++++ + G + +A  V + +P +     W +++           AC +++  E
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLV-TWTSMITGLARHGRFKQACNLFQRME 304


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 294/436 (67%), Gaps = 2/436 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCGDV+ A  +F+ +  +D ++WN ++ GY      +EAL LF  M       
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECP 299

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALVDMYSKCGNMNKAMD 145
           N+V+++SVL AC HLGA+D GRW HVYI++    +T   +L T+L+DMY+KCG++  A  
Sbjct: 300 NDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQ 359

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  R++ +W ++I G AM+G    + +LFS M+   V P+++TFV +L  C   GL
Sbjct: 360 VFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGL 419

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++ GR+ F SM ++Y + P LEHYGC++DL G +G   EA ++I+ MPM+P    W +LL
Sbjct: 420 LDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLL 479

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            AC+ + N E+ E  ++KL+++E +N G+YVLLSNIYA +  W+ V  VR ++  KG+KK
Sbjct: 480 KACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKK 539

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PGCS IEVD  VHEF  GD+ HPR  EI  ML E+  +L+ AG+  +T+ V+ ++EEE 
Sbjct: 540 VPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEW 599

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REI+ RDR 
Sbjct: 600 KEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRT 659

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHF++G CSC  YW
Sbjct: 660 RFHHFRDGVCSCCDYW 675



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 156/276 (56%), Gaps = 6/276 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L   +KVFD     DVV  TA+I+  A  GD   ARK+FDE+ ERD ++WNAM
Sbjct: 108 MYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAM 167

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI----E 116
           + GY + G+  EAL LF  M   +V+ +E ++VSV+SAC   G+++ GR  H ++    +
Sbjct: 168 ITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDD 227

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
            +    ++ +  AL+D+YSKCG++  A   F G+  ++V +W ++IGG       +++L 
Sbjct: 228 DHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALL 287

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDL 235
           LF  M ++G  PN+VT +SVL  C  +G ++ GR  H    ++  G+         L+D+
Sbjct: 288 LFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDM 347

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           Y + G ++ A  V N M  +    +W A++    M+
Sbjct: 348 YAKCGDIEAAHQVFNSMLYRS-LSSWNAMIFGFAMH 382



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 112/292 (38%), Gaps = 66/292 (22%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           L Y   VF+ I EP++                               + WN ML G+A  
Sbjct: 14  LPYAISVFETIQEPNL-------------------------------LIWNTMLRGHASS 42

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV-----------YIE 116
                AL ++  M       N  S   +L +C    A ++GR  H            Y+ 
Sbjct: 43  SDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVH 102

Query: 117 RNRLKMTVTLG--------------------TALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            + + M    G                    TAL+  Y+  G+   A   F  + ER+V 
Sbjct: 103 TSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVV 162

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD-- 214
           +W ++I G   NG  E++LELF  M +  VRP+E T VSV+  C   G +E GR+     
Sbjct: 163 SWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWV 222

Query: 215 -SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                ++G    L+    L+DLY + G ++ A  +   +  K    +W  L+
Sbjct: 223 DDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKD-VVSWNTLI 273



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+   +   +T++I   AKCGD++ A ++F+ M  R   +WNAM+ G+A  G+
Sbjct: 326 YIDKKLKGVTN-ETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGR 384

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           +  A  LF  M+ + V+ ++++ V +LSAC+H G LD GR
Sbjct: 385 ANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGR 424


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/441 (48%), Positives = 295/441 (66%), Gaps = 2/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D +  T ++   AK G++D A K+FDEM +RD  +WNA+++G+AQ  K  EAL LF  M+
Sbjct: 139 DALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRME 198

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           I   K NE+S++  LSAC  LG   +G   H YI+  R  M   +   ++DMY+KCG ++
Sbjct: 199 IDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVD 258

Query: 142 KAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           KA   F  M   +++ TW ++I   AM+G G K+LELF  M Q+GV P++V++++VL  C
Sbjct: 259 KAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCAC 318

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLVEEG   F+SM    G++P ++HYG +VDL GRAGRL EA D++N MP  P    
Sbjct: 319 NHGGLVEEGFRLFNSME-NCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVL 377

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W  LL A R ++N E+ E  SRKLVE+ + + G +VLLSN+YA  + W  V  VR+ MK 
Sbjct: 378 WQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKN 437

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + VKK+PG S IE +  +H+F+  D++H  + EI   L EI  R+K  GYVA T+ V++D
Sbjct: 438 RDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHD 497

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           I EE+KE+ L  HSEK+A+AFGLIS  EG PI+++KNLR+C DCH V K+ISK+++REII
Sbjct: 498 IGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREII 557

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDR RFH FKEG CSC+ YW
Sbjct: 558 VRDRVRFHRFKEGFCSCRDYW 578



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 1/235 (0%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G++  A   F ++       WNA++ G+ Q      A   +  M     K++ ++   VL
Sbjct: 53  GNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVL 112

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            AC  + A  +    H +I R        LGT L+D+Y+K G ++ A   F  M +R++ 
Sbjct: 113 KACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIA 172

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W ++I G A      ++L LF  M+  G +PNE++ +  L  C  +G  +EG +    +
Sbjct: 173 SWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYI 232

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           + E   +   +    ++D+Y + G +D+A  V   M  +     W  ++ A  M+
Sbjct: 233 KVER-FDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMH 286


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/460 (44%), Positives = 298/460 (64%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   +   +++F+ +   +V     MI+  A+ GD+  AR  FD MP+RD I+W A++
Sbjct: 307 YVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAII 366

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGYAQ G   EALHLF  M+    +LN  +  S LS C  + AL+ G+  H  + +  L+
Sbjct: 367 AGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 426

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
               +G AL+ MY KCGN++ A   F G++E+ V +W ++I G A +G G+++L LF  M
Sbjct: 427 SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESM 486

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K+ G+ P++VT V VL  C   GLV++G E+F SM ++YGI    +HY C++DL GRAGR
Sbjct: 487 KKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGR 546

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LD+A +++  MP +P A  WGALL A R++ NTE+GE A++ + E+E  N G YVLLSN+
Sbjct: 547 LDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNL 606

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W  V  +R  M+ +GVKK+PG S +EV  ++H F  GD  HP  + I   L E+
Sbjct: 607 YAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEEL 666

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             ++K  GYV++T  V++D+EEEEK   L  HSEK+A+AFG++++  G PIR++KNLRVC
Sbjct: 667 DLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVC 726

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH+  K ISK+  R II+RD +RFHHF  G+CSC  YW
Sbjct: 727 EDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 32/275 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +++F+   + +++    M+    K   +  AR +FD MPERD ++WN M+
Sbjct: 183 YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 242

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR------------ 109
           +GYAQ G+  EA  LF    + DV     +  +++S     G LD+ R            
Sbjct: 243 SGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 298

Query: 110 -WAHV---YIERNRLK-----------MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
            W  +   Y++  R+              V+    ++  Y++ G++ +A +FF  M +R+
Sbjct: 299 SWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRD 358

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
             +W ++I G A +G GE++L LF  MK+ G R N  TF S L  C  +  +E G++   
Sbjct: 359 SISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHG 418

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            + +  G+E        L+ +Y + G +D+A  V 
Sbjct: 419 RVVKA-GLESGCYVGNALLVMYCKCGNIDDAYIVF 452



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 151/316 (47%), Gaps = 51/316 (16%)

Query: 6   GCLG-----YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           GCL        +++F+ +   D+V    MIS C +  ++  AR +FD+MPERD ++WNAM
Sbjct: 89  GCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAM 148

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--------WAH 112
           L+GYAQ G  +EA  +F  M       N +S   +L+A    G ++  R        W  
Sbjct: 149 LSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFESKADWEL 204

Query: 113 V--------YIERNRL------------KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           +        Y++RNRL            +  V+  T ++  Y++ G + +A   F     
Sbjct: 205 ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT-MISGYAQNGELLEAQRLFEESPV 263

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           R+V+TWT+++ G   NG  +++  +F  M +     N V++ +++ G      +++ RE 
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYVQCKRMDQAREL 319

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
           F++M  +  +  W      ++  Y + G + +A +  ++MP +    +W A++     Y 
Sbjct: 320 FEAMPCQ-NVSSW----NTMITGYAQNGDIAQARNFFDRMPQRDSI-SWAAIIAG---YA 370

Query: 273 NTEMGELASRKLVELE 288
            +  GE A    VE++
Sbjct: 371 QSGYGEEALHLFVEMK 386



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 59/265 (22%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+V     I+   + G  D A ++F+ MP R  I+WNAM++G     K   A  LF  
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   D+    VS   ++S C                                    +  N
Sbjct: 106 MPTRDL----VSWNVMISGCV-----------------------------------RYRN 126

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M ER+V +W +++ G A NG  +++ E+F  M       N +++  +L  
Sbjct: 127 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAA 182

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
               G +E+ R  F+S + ++ +  W     C++  Y +  RL +A  + ++MP +    
Sbjct: 183 YVQNGRIEDARRLFES-KADWELISW----NCMMGGYVKRNRLVDARGIFDRMPERDEV- 236

Query: 260 AW----------GALLNACRMYKNT 274
           +W          G LL A R+++ +
Sbjct: 237 SWNTMISGYAQNGELLEAQRLFEES 261


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/444 (45%), Positives = 299/444 (67%), Gaps = 2/444 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  +   ++++   AK G +  AR++FD +PERD ++  A+++GYAQ G   EAL LF  
Sbjct: 143 ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 202

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +Q   ++ N V+  SVL+A + L ALD GR  H ++ R +L   V L  +L+DMYSKCG+
Sbjct: 203 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 262

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLR 198
           +  +   F  M ER V +W +++ G + +G G +++ELF LMK+   V+P+ VTF++VL 
Sbjct: 263 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 322

Query: 199 GCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           GC   G+ + G E F  M  ++ G EP +EHYGC+VDL+GRAGR++EA + I KMP +P 
Sbjct: 323 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 382

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           A  WG+LL ACR+++N  +GE  +R+L+E+E++N G YV+LSN+YA +  WD V  VR++
Sbjct: 383 AAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 442

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           MK K V K PG S IE+D+ +H F A D +HPR  E+   + E+S ++K AGYV   + V
Sbjct: 443 MKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCV 502

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           +YD+++E+KE  L  HSEK+A+AFGLI    G P+RI+KNLR+C DCH+  K +S+V+ R
Sbjct: 503 LYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGR 562

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           E+ +RD+NRFHH   G CSC  YW
Sbjct: 563 EVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 142/248 (57%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +EP V  +T +I    KC  +  AR++ DEMPER+ ++W AM++GY+Q G + EALHLF 
Sbjct: 41  YEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFV 100

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M +     NE +  +VL++CT       GR  H  + +   +  + +G++L+DMY+K G
Sbjct: 101 EMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAG 160

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + +A   F G+ ER+V + T++I G A  G  E++L+LF  +++ G+R N VT+ SVL 
Sbjct: 161 KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLT 220

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               +  ++ GR+ H   +R +      L++   L+D+Y + G L  +  + + MP +  
Sbjct: 221 ALSGLAALDHGRQVHSHVLRAKLPFYVVLQN--SLIDMYSKCGSLTYSRRIFDSMPERT- 277

Query: 258 AGAWGALL 265
             +W A+L
Sbjct: 278 VISWNAML 285



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           SVL+ C    A+ +G+  H ++ +   +  V L T L+ +Y+KC  +  A      M ER
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           NV +WT++I G +  G   ++L LF  M  +G  PNE TF +VL  C      + GR+  
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-I 133

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            S+  +   E  +     L+D+Y +AG++ EA  V + +P
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/460 (45%), Positives = 294/460 (63%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y E G L   +++F+      VV  TAMI+   K G ++LA K F+EMP ++ + WNAM+
Sbjct: 140 YVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMI 199

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGY +  ++   L LF  M     + N  S+ SVL  C++L AL  G+  H  I ++ + 
Sbjct: 200 AGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVS 259

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             +T GT+L+ MY KCG++  A   F  M +++V TW ++I G A +GAGEK+L LF  M
Sbjct: 260 WNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKM 319

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           +  G++P+ +TFV+VL  C   G V+ G E+F+SM R+YG+E   +HY C+VDL GR G+
Sbjct: 320 RDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGK 379

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L EA+D+I KMP KPH+  +G LL ACR++KN E+ E A++ L+ L+ ++   YV L+N+
Sbjct: 380 LVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANV 439

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA    WD V  VR+ MK   V K PG S IEV   VHEF +GD  HP    I   L E+
Sbjct: 440 YAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNEL 499

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
            R+++LAGYV +    ++D+ EE+K+  L +HSEK+AIA+GLI +  G PIR+ KNLRVC
Sbjct: 500 ERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVC 559

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH  TK IS +  R IIVRD  RFHHF++G+CSC  YW
Sbjct: 560 GDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 10/261 (3%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G +   +++FD I EPD+     M++      DV+ AR  FD+MP +D  +WN M++G++
Sbjct: 51  GKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFS 110

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q G   +A  LF +M +     N VS  +++S     G LD    A    E   ++ +V 
Sbjct: 111 QNGMMDQARELFLVMPVR----NSVSWNAMISGYVESGDLDL---AKQLFEVAPVR-SVV 162

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
             TA++  + K G +  A  +F  M  +N+ TW ++I G   N   E  L+LF  M ++G
Sbjct: 163 AWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESG 222

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            RPN  +  SVL GC  +  ++ G++    + +   +   +     L+ +Y + G L++A
Sbjct: 223 FRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKS-PVSWNITAGTSLLSMYCKCGDLEDA 281

Query: 246 LDVINKMPMKPHAGAWGALLN 266
             +   MP K     W A+++
Sbjct: 282 WKLFLVMPQK-DVVTWNAMIS 301


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/436 (48%), Positives = 292/436 (66%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           Q +++   +  G  + A ++F+ M  RD +AWN+++ G+A  G   EAL L+  M    V
Sbjct: 174 QNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGV 233

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + +  +MVS+LSAC  LGAL  G   H+Y+ +  L        AL+D+YSKCGN   A  
Sbjct: 234 EPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQK 293

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M+ER+V +WTS+I GLA+NG G ++L+LF  +++ G++P+E+TFV VL  C   G+
Sbjct: 294 VFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGM 353

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++EG  +F  M+ EYGI P +EH+GC+VDL  RAG++ +A D I  MP+ P+A  W  LL
Sbjct: 354 LDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLL 413

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            AC ++ + E+GE+A  ++  LE ++ G +VLLSN+YA  + W  V NVR+IM  KGVKK
Sbjct: 414 GACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKK 473

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG S++E+   V+EF  GD +HP+  E   ML +I++ LK+ GYV  T  V+ DIEEEE
Sbjct: 474 TPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEE 533

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  H+EKVAIAF L++   G PIRI+KNLRVC DCH   K+ISKVF REIIVRDR+
Sbjct: 534 KETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRS 593

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSCK YW
Sbjct: 594 RFHHFKDGSCSCKDYW 609



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 6/239 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++S  A    +  A ++F+++   +   WN M+ G+A+      A+ LF  M      L
Sbjct: 77  ALVSLSAP---MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL 133

Query: 88  NEVSMVSVL-SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +      L  A   L  +  G   H  + RN       +  +LV MYS  G    A   
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQV 193

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  R+   W SVI G A+NG   ++L L+  M   GV P+  T VS+L  C  +G +
Sbjct: 194 FEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGAL 253

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             G E       + G+         L+DLY + G   +A  V ++M  +    +W +L+
Sbjct: 254 ALG-ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERS-VVSWTSLI 310



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 46/206 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISAC--------------------------- 33
           +Y E+G  G          EPD     +++SAC                           
Sbjct: 224 LYREMGSEGV---------EPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHA 274

Query: 34  --------AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
                   +KCG+   A+K+FDEM ER  ++W +++ G A  G   EAL LF  ++   +
Sbjct: 275 SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGL 334

Query: 86  KLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           K +E++ V VL AC+H G LD+G  +     E   +   +     +VD+  + G +  A 
Sbjct: 335 KPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAY 394

Query: 145 DFFWGMK-ERNVYTWTSVIGGLAMNG 169
           D+   M    N   W +++G   ++G
Sbjct: 395 DYIRNMPVPPNAVIWRTLLGACTIHG 420


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/437 (48%), Positives = 294/437 (67%), Gaps = 3/437 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAMLAGYAQCGKSREALHLF 77
           E ++  + ++I    K G + LAR +FDEM   +R+ + WNAM+AGYAQ  K  +A+ +F
Sbjct: 124 ESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVF 183

Query: 78  HLMQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            +MQ    V  N+V++VSVL AC HLGALD G+W   +I R  + + + LG AL DMY+K
Sbjct: 184 RMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAK 243

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG + +A   F  M+ER+V +W+ +I GLAM G  +++   F  M   G +PN+V F+ +
Sbjct: 244 CGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGL 303

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLV++G   F++M +EYG+ P +EHYGC+VDL  RAG LD+A D+I+ MPMKP
Sbjct: 304 LTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKP 363

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
           +   WGALL  CR+Y+++  G+   + ++EL++ + G+YV L+N+Y+     D     R 
Sbjct: 364 NVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRL 423

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
            M+  GV K PGCS IEVD  VHEFF GD +HP  N+I  M+ E+  ++KLAGY   T+ 
Sbjct: 424 RMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDL 483

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V++ I+EEEKED L  HSEK+AIAFGLIS  EG  IR+VKNLR+C DCHD  K+IS +  
Sbjct: 484 VVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVK 543

Query: 437 REIIVRDRNRFHHFKEG 453
           REIIVRDR+RFHHFK+G
Sbjct: 544 REIIVRDRSRFHHFKDG 560



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 24/269 (8%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P+++    +I ACA   +V  A  +F  +   +  A NA L   AQ        H FH 
Sbjct: 22  DPNLIA-VKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNS------HWFHA 74

Query: 80  MQIHDVKL--------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           +Q  + ++        +E +  SVL AC  L  +  G+  H  + +   +  + +  +L+
Sbjct: 75  IQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLI 134

Query: 132 DMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRP 188
           DMY K G +  A   F  M  ++RNV  W ++I G A N     ++E+F +M+Q  GV P
Sbjct: 135 DMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVP 194

Query: 189 NEVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           N+VT VSVL  C  +G ++ G+  + F S RRE  +  +L +   L D+Y + G + EA 
Sbjct: 195 NDVTLVSVLPACAHLGALDLGKWIDGFIS-RREMALGLFLGN--ALADMYAKCGCITEAR 251

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTE 275
            V NKM  +    +W  ++    MY + +
Sbjct: 252 RVFNKMEERD-VISWSIIICGLAMYGHAD 279



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+   ++VF+ + E DV                               I+W+ +
Sbjct: 240 MYAKCGCITEARRVFNKMEERDV-------------------------------ISWSII 268

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           + G A  G + EA   F+ M     K N+V  + +L+ACTH G + +G      +++   
Sbjct: 269 ICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYG 328

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGG 164
           +   V     +VD+ S+ G ++KA D    M  + NV  W +++GG
Sbjct: 329 VSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGG 374


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/442 (45%), Positives = 293/442 (66%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    A++S    CGD+  A+ +F++MP+RD ++WN ++AG+ Q GK++ A   F +
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKM 605

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +K ++++   +L+AC    AL +GR  H  I        V +GT L+ MY+KCG+
Sbjct: 606 MQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGS 665

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + ++NVY+WTS+I G A +G G+++LELF  M+Q GV+P+ +TFV  L  
Sbjct: 666 IEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSA 725

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+EEG  HF SM+ E+ IEP +EHYGC+VDL+GRAG L+EA++ I KM ++P + 
Sbjct: 726 CAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSR 784

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL AC+++ N E+ E A++K +EL+  ++G +V+LSNIYA +  W  V  +R++M 
Sbjct: 785 VWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVML 844

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +GV K PG S IEVD +VH F++ D+THP+  EI   L  +   ++  GYV +T  V++
Sbjct: 845 DRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLH 904

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+ EKE  L  HSE++AI +GL+      PI I KNLRVC DCH  TK ISK+  R+I
Sbjct: 905 DVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQI 964

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I RD NRFHHFK+G CSC  +W
Sbjct: 965 IARDSNRFHHFKDGVCSCGDFW 986



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 147/249 (59%), Gaps = 4/249 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+   TA+I+   KCGD+  A K+FD +P RD + W +M+ G A+ G+ ++A +LF  
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V+ ++V+ VS+L AC H  AL+QG+  H  ++       + +GTA++ MY+KCG+
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGS 362

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A++ F  +K RNV +WT++I G A +G  +++   F+ M ++G+ PN VTF+S+L  
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGA 422

Query: 200 CCVVGLVEEGREHFDS-MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     ++ G++  D  +   YG +  +     L+ +Y + G L +A  V  K+  K + 
Sbjct: 423 CSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 259 GAWGALLNA 267
            AW A++ A
Sbjct: 480 VAWNAMITA 488



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 159/283 (56%), Gaps = 6/283 (2%)

Query: 8   LGYCQKVFDGIH----EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           LG  +++++ I     +PD+     +I+  AKCG+   A+++FD+M E+D  +WN +L G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y Q G   EA  L   M    VK ++ + VS+L+AC     +D+GR  +  I +      
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           + +GTAL++M+ KCG++  A   F  +  R++ TWTS+I GLA +G  +++  LF  M++
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV+P++V FVS+LR C     +E+G++    M +E G +  +     ++ +Y + G ++
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           +AL+V + +  + +  +W A++     +   +   L   K++E
Sbjct: 365 DALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 141/260 (54%), Gaps = 6/260 (2%)

Query: 12  QKVFDGIHE----PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           Q++ D I E     D   +TA++S  AKCG +  A ++F+++ +++ +AWNAM+  Y Q 
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQH 492

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
            +   AL  F  +    +K N  +  S+L+ C    +L+ G+W H  I +  L+  + + 
Sbjct: 493 EQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVS 552

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            ALV M+  CG++  A + F  M +R++ +W ++I G   +G  + + + F +M+++G++
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK 612

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+++TF  +L  C     + EGR    ++  E   +  +     L+ +Y + G +++A  
Sbjct: 613 PDKITFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671

Query: 248 VINKMPMKPHAGAWGALLNA 267
           V +K+P K +  +W +++  
Sbjct: 672 VFHKLP-KKNVYSWTSMITG 690



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 52  RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111
           +D    NA+L   ++ G+  EA+ +   +    +++   +  ++L  C     L  G   
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           + +I+++ ++  + +   L++MY+KCGN   A   F  M+E++VY+W  ++GG   +G  
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
           E++ +L   M Q  V+P++ TFVS+L  C     V++GRE ++ + +  G +  L     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTA 251

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN----------ACRMYKNTE 275
           L++++ + G + +A  V + +P +     W +++           AC +++  E
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLV-TWTSMITGLARHGRFKQACNLFQRME 304


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/453 (45%), Positives = 299/453 (66%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  G+ +   VC T +I+    C DVD AR++FD++ E   +A+NA++   A+  +
Sbjct: 158 HCLAVKLGVGDNMYVCPT-LINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSR 216

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  +Q   +K  +V+M+  LS+C  LGALD GRW H Y+++N     V + TA
Sbjct: 217 PNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTA 276

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMY+KCG+++ A+  F  M  R+   W+++I   A +G G +++ +   MK+A V+P+
Sbjct: 277 LIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPD 336

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+TF+ +L  C   GLVEEG E+F SM  EYGI P ++HYGC++DL GRAGRL+EA   I
Sbjct: 337 EITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFI 396

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           +++P+KP    W  LL++C  + N EM +L  +++ EL+  + G YV+LSN+ A +  WD
Sbjct: 397 DELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWD 456

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V ++R++M  KG  K+PGCS IEV+  VHEFF+GD  H     +   L E+ + LKLAG
Sbjct: 457 DVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAG 516

Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV +T+ V Y DIE+EEKE  L  HSEK+AI +GL++   G  IR+VKNLRVC DCH+  
Sbjct: 517 YVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAA 576

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K IS +F R+II+RD  RFHHFK+GKCSC  YW
Sbjct: 577 KFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 131/252 (51%), Gaps = 5/252 (1%)

Query: 19  HEPDVVCQTAMISACAK---CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           H+ +    T +I+ C        +D A +MFD++P+ D + +N M  GYA+      A+ 
Sbjct: 62  HQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAIL 121

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           L   +    +  ++ +  S+L AC  L AL++G+  H    +  +   + +   L++MY+
Sbjct: 122 LCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYT 181

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
            C +++ A   F  + E  V  + ++I   A N    ++L LF  ++++G++P +VT + 
Sbjct: 182 ACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLV 241

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            L  C ++G ++ GR   + +++  G + +++    L+D+Y + G LD+A+ V   MP +
Sbjct: 242 ALSSCALLGALDLGRWIHEYVKKN-GFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRR 300

Query: 256 PHAGAWGALLNA 267
               AW A++ A
Sbjct: 301 -DTQAWSAMIVA 311


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/459 (44%), Positives = 305/459 (66%), Gaps = 9/459 (1%)

Query: 12  QKVFDGIH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           + + +G+H        E D+  +  ++ A AKCG++ ++R++FD M ERD I+WN+++A 
Sbjct: 277 KSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAV 336

Query: 64  YAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           YAQ G S E++ +FH M +  ++  N V++ +VL AC H G+   G+  H  + +  L+ 
Sbjct: 337 YAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES 396

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
            V +GT+++DMY KCG +  A   F  M+E+NV +W++++ G  M+G  +++LE+F  M 
Sbjct: 397 NVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMN 456

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            AGV+PN +TFVSVL  C   GL+EEG   F +M  E+ +EP +EHYGC+VDL GRAG L
Sbjct: 457 MAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYL 516

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302
            EA D+I  M ++P    WGALL ACRM+KN ++GE+++RKL EL+ KN G YVLLSNIY
Sbjct: 517 KEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIY 576

Query: 303 AESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEIS 362
           A++  W+ V  +R +MK  G+ K PG S++++   VH F  GD  HP++ +I   L ++S
Sbjct: 577 ADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLS 636

Query: 363 RRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCW 422
            +L+  GYV +   V++D+  EEKE  L  HSEK+A+AFG+++   G  I I+KNLRVC 
Sbjct: 637 MKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCG 696

Query: 423 DCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           DCH   K ISK+ +REI+VRD  RFHHF++G CSC  YW
Sbjct: 697 DCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 52/296 (17%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EPD+   +A++   +KCG++  AR +FDE+  R+ ++W +M+ GY Q   +  AL LF  
Sbjct: 184 EPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKE 243

Query: 80  MQIHD--------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
             + +        V ++ ++MVSVLSAC+ +         H ++ +   +  + +   L+
Sbjct: 244 FLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLM 303

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNE 190
           D Y+KCG +  +   F GM ER+V +W S+I   A NG   +S+E+F  M + G +  N 
Sbjct: 304 DAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 363

Query: 191 VTFVSVLRGC-----------------------------------CVVGLVEEGREHFDS 215
           VT  +VL  C                                   C  G VE  R+ FD 
Sbjct: 364 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 423

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM---KPHAGAWGALLNAC 268
           M RE  ++ W      +V  YG  G   EAL+V  +M M   KP+   + ++L AC
Sbjct: 424 M-REKNVKSW----SAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAAC 474



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 18/294 (6%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
            +WN+++A  A+ G S EAL  F  M+   +K N  +    + +C+ L  L  GR AH  
Sbjct: 118 FSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQ 177

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
                 +  + + +ALVDMYSKCG +  A   F  +  RN+ +WTS+I G   N    ++
Sbjct: 178 ALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRA 237

Query: 175 LELFS--LMKQAG------VRPNEVTFVSVLRGCCVVG--LVEEGREHFDSMRREYGIEP 224
           L LF   L++++G      V  + +  VSVL  C  V    + EG   F   R   G E 
Sbjct: 238 LLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKR---GFEG 294

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA-CRMYKNTEMGELASRK 283
            L     L+D Y + G L  +  V + M  +    +W +++    +   +TE  E+  R 
Sbjct: 295 DLGVENTLMDAYAKCGELGVSRRVFDGMAERD-VISWNSIIAVYAQNGMSTESMEIFHRM 353

Query: 284 LVELETKNHG---AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEV 334
           + + E   +    + VLL+  ++ S+   + I+ + I          G S+I++
Sbjct: 354 VKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDM 407



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 76/148 (51%), Gaps = 6/148 (4%)

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           + ++  G  L   YS   N+    + +  + + NV++W SVI  LA +G   ++L  FS 
Sbjct: 85  RRSICAGAVLRRRYSNNPNLTTLFNKY--VDKTNVFSWNSVIAELARSGDSVEALRAFSS 142

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M++  ++PN  TF   ++ C  +  +  GR+ H  ++   +G EP L     LVD+Y + 
Sbjct: 143 MRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALI--FGFEPDLFVSSALVDMYSKC 200

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNA 267
           G L +A  + +++  + +  +W +++  
Sbjct: 201 GELRDARTLFDEISHR-NIVSWTSMITG 227


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/460 (44%), Positives = 298/460 (64%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   +   +++F+ +   +V     MI+  A+ GD+  AR  FD MP+RD I+W A++
Sbjct: 226 YVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAII 285

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGYAQ G   EALHLF  M+    +LN  +  S LS C  + AL+ G+  H  + +  L+
Sbjct: 286 AGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 345

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
               +G AL+ MY KCGN++ A   F G++E+ V +W ++I G A +G G+++L LF  M
Sbjct: 346 SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESM 405

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K+ G+ P++VT V VL  C   GLV++G E+F SM ++YGI    +HY C++DL GRAGR
Sbjct: 406 KKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGR 465

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LD+A +++  MP +P A  WGALL A R++ NTE+GE A++ + E+E  N G YVLLSN+
Sbjct: 466 LDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNL 525

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W  V  +R  M+ +GVKK+PG S +EV  ++H F  GD  HP  + I   L E+
Sbjct: 526 YAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEEL 585

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             ++K  GYV++T  V++D+EEEEK   L  HSEK+A+AFG++++  G PIR++KNLRVC
Sbjct: 586 DLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVC 645

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH+  K ISK+  R II+RD +RFHHF  G+CSC  YW
Sbjct: 646 EDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 32/281 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +++F+   + +++    M+    K   +  AR +FD MPERD ++WN M+
Sbjct: 102 YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 161

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR------------ 109
           +GYAQ G+  EA  LF    + DV     +  +++S     G LD+ R            
Sbjct: 162 SGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 217

Query: 110 -WAHV---YIERNRLK-----------MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
            W  +   Y++  R+              V+    ++  Y++ G++ +A +FF  M +R+
Sbjct: 218 SWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRD 277

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
             +W ++I G A +G GE++L LF  MK+ G R N  TF S L  C  +  +E G++   
Sbjct: 278 SISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHG 337

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            + +  G+E        L+ +Y + G +D+A  V   +  K
Sbjct: 338 RVVKA-GLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 377



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 137/287 (47%), Gaps = 46/287 (16%)

Query: 30  ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
           +  C +  ++  AR +FD+MPERD ++WNAML+GYAQ G  +EA  +F  M       N 
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NS 92

Query: 90  VSMVSVLSACTHLGALDQGR--------WAHV--------YIERNRL------------K 121
           +S   +L+A    G ++  R        W  +        Y++RNRL            +
Sbjct: 93  ISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER 152

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V+  T ++  Y++ G + +A   F     R+V+TWT+++ G   NG  +++  +F  M
Sbjct: 153 DEVSWNT-MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 211

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
            +     N V++ +++ G      +++ RE F++M  +  +  W      ++  Y + G 
Sbjct: 212 PE----KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSW----NTMITGYAQNGD 262

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           + +A +  ++MP +    +W A++     Y  +  GE A    VE++
Sbjct: 263 IAQARNFFDRMPQRDSI-SWAAIIAG---YAQSGYGEEALHLFVEMK 305


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/444 (45%), Positives = 299/444 (67%), Gaps = 2/444 (0%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            E  +   ++++   AK G +  AR++FD +PERD ++  A+++GYAQ G   EAL LF  
Sbjct: 610  ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 669

Query: 80   MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            +Q   ++ N V+  SVL+A + L ALD GR  H ++ R +L   V L  +L+DMYSKCG+
Sbjct: 670  LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 729

Query: 140  MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLR 198
            +  +   F  M ER V +W +++ G + +G G +++ELF LMK+   V+P+ VTF++VL 
Sbjct: 730  LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 789

Query: 199  GCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            GC   G+ + G E F  M  ++ G EP +EHYGC+VDL+GRAGR++EA + I KMP +P 
Sbjct: 790  GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 849

Query: 258  AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
            A  WG+LL ACR+++N  +GE  +R+L+E+E++N G YV+LSN+YA +  WD V  VR++
Sbjct: 850  AAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 909

Query: 318  MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
            MK K V K PG S IE+D+ +H F A D +HPR  E+   + E+S ++K AGYV   + V
Sbjct: 910  MKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCV 969

Query: 378  MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
            +YD+++E+KE  L  HSEK+A+AFGLI    G P+RI+KNLR+C DCH+  K +S+V+ R
Sbjct: 970  LYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGR 1029

Query: 438  EIIVRDRNRFHHFKEGKCSCKGYW 461
            E+ +RD+NRFHH   G CSC  YW
Sbjct: 1030 EVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 142/248 (57%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +EP V  +T +I    KC  +  AR++ DEMPER+ ++W AM++GY+Q G + EALHLF 
Sbjct: 508 YEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFV 567

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M +     NE +  +VL++CT       GR  H  + +   +  + +G++L+DMY+K G
Sbjct: 568 EMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAG 627

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + +A   F G+ ER+V + T++I G A  G  E++L+LF  +++ G+R N VT+ SVL 
Sbjct: 628 KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLT 687

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               +  ++ GR+ H   +R +      L++   L+D+Y + G L  +  + + MP +  
Sbjct: 688 ALSGLAALDHGRQVHSHVLRAKLPFYVVLQN--SLIDMYSKCGSLTYSRRIFDSMPERT- 744

Query: 258 AGAWGALL 265
             +W A+L
Sbjct: 745 VISWNAML 752



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           SVL+ C    A+ +G+  H ++ +   +  V L T L+ +Y+KC  +  A      M ER
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           NV +WT++I G +  G   ++L LF  M  +G  PNE TF +VL  C      + GR+  
Sbjct: 542 NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-I 600

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            S+  +   E  +     L+D+Y +AG++ EA  V + +P
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/436 (47%), Positives = 295/436 (67%), Gaps = 1/436 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +TA+++  AKC D+ LA K+FDE+ +R+ +AW+ M++GYA+ G   EAL LF  MQ   V
Sbjct: 130 ETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGV 189

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             +EV+MVSV+SAC   GALD G+W H YI +  ++  + L TALV+MY+KCG + +A +
Sbjct: 190 VPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKE 249

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  ++   W+S+I GLA+NG  E +LE F  M++A V+PN VTF+ VL  C   GL
Sbjct: 250 VFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGL 309

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V EGR ++ SM  E+GI P +E YGC+VDL  RA  +++A  ++  MP+ P+   W  LL
Sbjct: 310 VSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 368

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
             C+  KN +  E+ +++L+ELE  N   Y+LLSN+YA    W+++  VR+ MK  G+K 
Sbjct: 369 VGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKA 428

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PGCS IEVD  VHEF  GD +HP   E+  +L +IS+R+   G+    + V++++ +EE
Sbjct: 429 VPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEE 488

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE+ LC+HSE++AIA+GL+  K  + IRIVKNLRVC DCH+VTK+IS  + REIIVRDR 
Sbjct: 489 KENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRV 548

Query: 446 RFHHFKEGKCSCKGYW 461
           RFH F  G CSC+ +W
Sbjct: 549 RFHKFVNGSCSCRDFW 564



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 135/244 (55%), Gaps = 4/244 (1%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLFHLMQI 82
           +C+     A +  GD+D ARK+F ++   +  +WN+M+ G +Q    S+E + LF  M  
Sbjct: 25  LCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVR 84

Query: 83  HDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 N  +M  VL AC+ + AL++G+  H  + ++    +  + TALV+ Y+KC ++ 
Sbjct: 85  RGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIV 144

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +RN+  W+++I G A  G   ++L LF  M++AGV P+EVT VSV+  C 
Sbjct: 145 LASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACA 204

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G ++ G+     + ++  IE  LE    LV++Y + G ++ A +V + MP+K    AW
Sbjct: 205 ASGALDTGKWVHAYINKQL-IETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAW 262

Query: 262 GALL 265
            +++
Sbjct: 263 SSMI 266



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 57/90 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+   TA+++  AKCG ++ A+++FD MP +D  AW++M+ G A  G + +AL  F  
Sbjct: 225 ETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFR 284

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           M+   VK N V+ + VLSAC H G + +GR
Sbjct: 285 MEEAKVKPNHVTFIGVLSACAHSGLVSEGR 314


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 295/463 (63%), Gaps = 5/463 (1%)

Query: 3   AELGCL---GYCQKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+LG L    +  K  D ++   D+    ++IS  +KC  VD+A  +F+ +  R  ++WN
Sbjct: 360 ADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWN 419

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GYAQ G+  EAL+ F  M+   +K +  +MVSV+ A   L      +W H  I R+
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L   + + TALVDMYSKCG ++ A   F  + +R+V TW ++I G   +G G  +L+LF
Sbjct: 480 CLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLF 539

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             MK+  V PN++T++SV+  C   GLV+EG  HF SM+++YG+EP ++HYG +VDL GR
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGR 599

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGR+ EA D I  MP+ P    +GA   AC+++KN E+GE A++KL EL     G +VLL
Sbjct: 600 AGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLL 659

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           +NIYA +  W +V  VR+ M+ KG+KK PGCSV+E+  EVH F++G  THP+   I   L
Sbjct: 660 ANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFL 719

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+   +K AGYV +TN ++ D+E++ +E  L  HSEK+AIAFGL++   G  I + KNL
Sbjct: 720 EELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNL 778

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH+ TK IS V  REIIVRD  RFHHFK G CSC  YW
Sbjct: 779 RVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 133/244 (54%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T +++  AKC  +D A KMFD MPERD ++WN ++AG++Q G +++AL L   MQ
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + + +++V+VL A   +G L  G+  H Y  R      V + TAL DMYSKCG++ 
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F GM ++ V +W S++ G   NG  EK++ +F  M + G+ P  VT +  L  C 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +E G+        +  +   +     L+ +Y +  R+D A D+ N +  + H  +W
Sbjct: 361 DLGDLERGK-FVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV-SW 418

Query: 262 GALL 265
            A++
Sbjct: 419 NAMI 422



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 138/284 (48%), Gaps = 43/284 (15%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA+    +KCG V+ AR +FD M ++  ++WN+M+ GY Q G+  +A+ +F  M  
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +    V+++  L AC  LG L++G++ H ++++  L   +++  +L+ MYSKC  ++ 
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV------ 196
           A D F  +  R   +W ++I G A NG   ++L  FS MK  G++P+  T VSV      
Sbjct: 403 ASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAE 462

Query: 197 --------------LRGC---------------CVVGLVEEGREHFDSMRREYGIEPWLE 227
                         +R C                  G +   R+ FD +   + I     
Sbjct: 463 LSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT---- 518

Query: 228 HYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
            +  ++D YG  G    ALD+ +KM    ++P+   + ++++AC
Sbjct: 519 -WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 4/242 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT ++S  +K G ++ A ++F+ + ++    ++ ML GYA+      AL     M+  DV
Sbjct: 84  QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           K    +   +L  C     L +G+  H  +  N     V   T +V+MY+KC  ++ A  
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++ +W ++I G + NG  +K+LEL   M+  G RP+ +T V+VL     VGL
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  G+  H  ++R   G    +     L D+Y + G ++ A  + + M  K    +W ++
Sbjct: 264 LMVGKSIHGYAIRA--GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKT-VVSWNSM 320

Query: 265 LN 266
           ++
Sbjct: 321 MD 322


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/435 (47%), Positives = 290/435 (66%), Gaps = 1/435 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++I+   KCG ++ ARK+F ++P RD + W AM+ GYAQ G   EA++LF  MQ   +K 
Sbjct: 289 SLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKP 348

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           ++++  SVL++C+    L +G+  H  +      + V L +ALV MY+KCG+M+ A   F
Sbjct: 349 DKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVF 408

Query: 148 WGMKERNVYTWTSVIGGL-AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
             M ERNV  WT++I G  A +G   ++LE F  MK+ G++P++VTF SVL  C  VGLV
Sbjct: 409 NQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLV 468

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEGR+HF SM  +YGI+P +EHY C VDL GRAG L+EA +VI  MP  P    WGALL+
Sbjct: 469 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLS 528

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++ + E GE A+  +++L+  + GAYV LS+IYA +  ++    VRQ+M+ + V K 
Sbjct: 529 ACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKE 588

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PG S IEVD +VH F   D++HP   +I V LG+++ ++K  GYV +T  V++D++EE+K
Sbjct: 589 PGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQK 648

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSE++AI +GL+    G+PIRIVKNLRVC DCH  TK ISKV  REII RD  R
Sbjct: 649 ERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQR 708

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF +G CSC  +W
Sbjct: 709 FHHFADGVCSCGDFW 723



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 144/250 (57%), Gaps = 6/250 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EP V   T+++   AKCGD+  AR +FD +PE++ + W  ++AGYAQ G+   AL L   
Sbjct: 182 EPRV--GTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLET 239

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ  +V  N+++  S+L  CT   AL+ G+  H YI ++     + +  +L+ MY KCG 
Sbjct: 240 MQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGG 299

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  +  R+V TWT+++ G A  G  ++++ LF  M+Q G++P+++TF SVL  
Sbjct: 300 LEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTS 359

Query: 200 CCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     ++EG R H   +   Y ++ +L+    LV +Y + G +D+A  V N+M  + + 
Sbjct: 360 CSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDASLVFNQMSER-NV 416

Query: 259 GAWGALLNAC 268
            AW A++  C
Sbjct: 417 VAWTAIITGC 426



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 144/249 (57%), Gaps = 4/249 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P+   +  ++S  AKCG +  AR++FD + +R+ ++W AM+  +    K+ EA   +  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++   K ++V+ VS+L+A T+   L  G+  H+ I    L++   +GT+LV MY+KCG+
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGD 198

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++KA   F  + E+NV TWT +I G A  G  + +LEL   M+QA V PN++TF S+L+G
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQG 258

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     +E G++ H   ++  YG E W+     L+ +Y + G L+EA  + + +P +   
Sbjct: 259 CTTPAALEHGKKVHRYIIQSGYGRELWV--VNSLITMYCKCGGLEEARKLFSDLPHR-DV 315

Query: 259 GAWGALLNA 267
             W A++  
Sbjct: 316 VTWTAMVTG 324



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G+ +EAL + + M +   ++       +L  C  L +L+QGR  H  I ++ ++    
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS---LMK 182
           L   L+ MY+KCG++  A   F  +++RN+ +WT++I       AG K+LE F     MK
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFV---AGNKNLEAFKCYETMK 140

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
            AG +P++VTFVS+L       L++ G++ H + +     +EP +     LV +Y + G 
Sbjct: 141 LAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGD 198

Query: 242 LDEALDVINKMPMK 255
           + +A  + +++P K
Sbjct: 199 ISKARVIFDRLPEK 212



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 86/142 (60%), Gaps = 4/142 (2%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG-YAQCGKS 70
           Q++    +  DV  Q+A++S  AKCG +D A  +F++M ER+ +AW A++ G  AQ G+ 
Sbjct: 374 QQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRC 433

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--WAHVYIERNRLKMTVTLGT 128
           REAL  F  M+   +K ++V+  SVLSACTH+G +++GR  +  +Y++   +K  V   +
Sbjct: 434 REALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYG-IKPMVEHYS 492

Query: 129 ALVDMYSKCGNMNKAMDFFWGM 150
             VD+  + G++ +A +    M
Sbjct: 493 CFVDLLGRAGHLEEAENVILSM 514


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/444 (46%), Positives = 303/444 (68%), Gaps = 5/444 (1%)

Query: 22  DVVCQTAMISACAKCGDVDL--ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D      M+ A AK G  DL  ARK+FD M E+D ++WN+M+A YAQ G S +AL L+  
Sbjct: 227 DAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRK 285

Query: 80  MQ--IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           M      +K N V++ ++L AC H G +  G+  H  + R  L+  V +GT++VDMYSKC
Sbjct: 286 MLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKC 345

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +  A   F  +KE+N+ +W+++I G  M+G G+++L++F+ M ++G  PN +TF+SVL
Sbjct: 346 GRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVL 405

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GL+++GR  +++M++ +GIEP +EHYGC+VDL GRAG LDEA  +I +M +KP 
Sbjct: 406 AACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 465

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           A  WGALL+ACR++KN E+ E+++++L EL+  N G YVLLSNIYAE+  W  V  +R +
Sbjct: 466 AAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVL 525

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           +K +G++K PG S +E+    H F+ GD++HP++ EI   LG++  +++ AGYV NT  V
Sbjct: 526 VKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSV 585

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++D++EEEK   L  HSEK+AIAF L++   G  I ++KNLRVC DCH   K+I+K+  R
Sbjct: 586 LHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQR 645

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EIIVRD  RFHHFK+G CSC  YW
Sbjct: 646 EIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 84/147 (57%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +V   T+++   +KCG V++ARK F ++ E++ ++W+AM+ GY   G  +EAL +F+ 
Sbjct: 329 EENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNE 388

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M       N ++ +SVL+AC+H G LD+GR W +   +R  ++  V     +VD+  + G
Sbjct: 389 MCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAG 448

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGG 164
            +++A      MK + +   W +++  
Sbjct: 449 CLDEAYGLIKEMKVKPDAAIWGALLSA 475



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 9/264 (3%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +  G+   D    +A++     C     ARK FDE+P  +P+   AM +GY +      +
Sbjct: 116 IRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPS 175

Query: 74  LHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           L LF   +       ++E + +   SA   +         H  + +  L     +   ++
Sbjct: 176 LALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTML 235

Query: 132 DMYSKCG--NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVR 187
           D Y+K G  ++  A   F  M E++V +W S+I   A NG    +L L+  M      ++
Sbjct: 236 DAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIK 294

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            N VT  ++L  C   G ++ G+   + + R  G+E  +     +VD+Y + GR++ A  
Sbjct: 295 CNAVTLSAILLACAHAGTIQTGKCIHNQVVR-MGLEENVYVGTSVVDMYSKCGRVEMARK 353

Query: 248 VINKMPMKPHAGAWGALLNACRMY 271
              K+  K +  +W A++    M+
Sbjct: 354 AFQKIKEK-NILSWSAMITGYGMH 376


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/465 (44%), Positives = 297/465 (63%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVD----LARKMFDEMPERDPIA 56
           MY +  C     +VFD +   DV    A I   ++ G V+    L R++ D+  E + ++
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W +M+A  +Q G+  EAL LF  MQI  VK N V++  +L AC ++ AL  G+ AH +  
Sbjct: 354 WTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSL 413

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R  +   V +G+AL+DMY+KCG +  +   F G+  +N+  W +VI G AM+G  ++++E
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F LM+++G +P+ ++F  VL  C   GL EEG  +F+SM  +YGIE  +EHY C+V L 
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            RAG+L++A  +I +MP+ P A  WGALL++CR++ N  +GE+A+ KL ELE  N G Y+
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYI 593

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSNIYA    W+ V  VR +MK KG++K PGCS IEV  +VH   AGD++HP+  +I  
Sbjct: 594 LLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIE 653

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L ++S  +K  GY    N V+ D+EE++KE  LC HSEK+A+ FGL++   G P++++K
Sbjct: 654 KLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIK 713

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH V K IS    REI VRD NRFHHFKEG CSC  YW
Sbjct: 714 NLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 149/311 (47%), Gaps = 43/311 (13%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MY +   +    +VFD + EPDVV  +A+++A A+ G VD A+++F EM +     + I+
Sbjct: 158 MYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLIS 217

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN M+AG+   G   EA+ +F  M +   + +  ++ SVL A   L  L  G   H Y+ 
Sbjct: 218 WNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVI 277

Query: 117 RNRLKMTVTLGTALVDMYSKC---GNMNKAMD------------FFWGMK---------- 151
           +  L     + +AL+DMY KC     M++  D            F +G+           
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337

Query: 152 ----------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                     E NV +WTS+I   + NG   ++LELF  M+ AGV+PN VT   +L  C 
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACG 397

Query: 202 VVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  +  G+  H  S+RR  GI   +     L+D+Y + GR+  +    + +P K +   
Sbjct: 398 NIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-NLVC 454

Query: 261 WGALLNACRMY 271
           W A++    M+
Sbjct: 455 WNAVIAGYAMH 465



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 1/183 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  + D +PE +  +++ ++  +++  +   AL  F  M    +  +   + S + AC  
Sbjct: 67  ATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L AL   R  H     +       + ++LV MY KC  +  A   F  M E +V +W+++
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSAL 186

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           +   A  G  +++  LFS M  +GV+PN +++  ++ G    GL  E    F  M    G
Sbjct: 187 VAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLR-G 245

Query: 222 IEP 224
            EP
Sbjct: 246 FEP 248


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/447 (46%), Positives = 291/447 (65%), Gaps = 6/447 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREAL 74
           G+   D     +M+S  A  GD+  AR++FD  P  +RD   WN++L  Y   G     L
Sbjct: 129 GLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVL 188

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
            LF  M    V  +EV++++V+SAC+HLGALD GRWAH Y  R     T  LGTAL++MY
Sbjct: 189 RLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMY 244

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
            +CG++  A   F  M +++V TW+ +I GLA+NG    +L+LF+ MK  GV P+ +T  
Sbjct: 245 MRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMT 304

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +VL  C   G+V+EG+     M  EY ++P +EHYGC+VDL GRAG+L+EAL +I  +P 
Sbjct: 305 AVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPF 364

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           K     WGALL ACR +KN +MG++A+ ++++L+  + GA V LSN YA +  WD V  V
Sbjct: 365 KADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEV 424

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R  MK   + K PG S++E+D  V+EF +GD +HP+ + I  ML E+ + L L G+  +T
Sbjct: 425 RSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPST 484

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
             V +DI+EE+KE  + +HSEK+A+A GLIS + G  IRIVKNLR+C DCH V K++S+V
Sbjct: 485 KEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEV 544

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ++R I+VRDRNRFHHFK G CSC  YW
Sbjct: 545 YDRVIVVRDRNRFHHFKNGSCSCLDYW 571


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/464 (45%), Positives = 312/464 (67%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNA 59
           +Y   G L   ++VF  + +P+VV  T+++S  ++ G VD A ++F+ MP +++ ++WNA
Sbjct: 144 VYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNA 203

Query: 60  MLAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           M+A + +  + REA  LF  M++   ++L+     ++LSACT +GAL+QG W H Y+E+ 
Sbjct: 204 MIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKT 263

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            + +   L T ++DMY KCG ++KA   F G+K + V +W  +IGG AM+G GE ++ LF
Sbjct: 264 GIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLF 323

Query: 179 SLMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
             M++ A V P+ +TFV+VL  C   GLVEEG  +F  M   +GI+P  EHYGC+VDL  
Sbjct: 324 KEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLA 383

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAGRL+EA  VI++MPM P A   GALL ACR++ N E+GE    +++EL+ +N G YV+
Sbjct: 384 RAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVI 443

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L N+YA    W++V  VR++M  +GVKK PG S+IE++  V+EF AG   HP    I   
Sbjct: 444 LGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAK 503

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + E+   +++ G+V +T+ V++D+ EEE+E+ L  HSEK+AIA+GL+  K G  +R+ KN
Sbjct: 504 IYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKN 563

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH  +KMISKV++ +II+RDR+RFHHF  G+CSCK YW
Sbjct: 564 LRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 50/293 (17%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF--HLMQIHDVKLNEVS 91
           +K GD++ A K+F  +P  D   +N +   +    ++     LF  H++Q H V  N  +
Sbjct: 47  SKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQ-HCVTPNAFT 105

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
             S++ AC      ++ +  H ++ +            L+ +Y   G+++ A   F  M 
Sbjct: 106 FPSLIRACK---LEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMS 162

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG-LVEEGR 210
           + NV +WTS++ G +  G  +++  +F LM     + N V++ +++  C V G    E  
Sbjct: 163 DPNVVSWTSLVSGYSQWGLVDEAFRVFELMP---CKKNSVSWNAMI-ACFVKGNRFREAF 218

Query: 211 EHFDSMRREYGIE----------------------PWLEHY-------------GCLVDL 235
             F  MR E  +E                       W+  Y               ++D+
Sbjct: 219 ALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDM 278

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           Y + G LD+A  V   + +K    +W  ++    M+     GE A R   E+E
Sbjct: 279 YCKCGCLDKAFHVFCGLKVK-RVSSWNCMIGGFAMHGK---GEDAIRLFKEME 327


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/458 (46%), Positives = 292/458 (63%), Gaps = 10/458 (2%)

Query: 14  VFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +FDG+  +P VV  TAM++  AK G +D AR +FD +P +D I WNAM+ GY Q G+  E
Sbjct: 183 LFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSE 242

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTLGTA 129
           AL LF  M    V+ +EVS+V  LSA   LG  + GRW H ++  +   R+++   +GTA
Sbjct: 243 ALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTA 302

Query: 130 LVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           L+DMY KCG++  A+  F   G  +R++  W +++ G AM+G   ++L  F  ++  G+ 
Sbjct: 303 LIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLW 362

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P ++TF+ VL  C   GLV+EGRE F SM  EYGIEP +EHYGC+VDL GRAGR++EA +
Sbjct: 363 PTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFE 422

Query: 248 VINKMP-MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
           ++  M   KP A  W +LL ACR++KN E+G+  +  LV     N G YVLLSN+YA + 
Sbjct: 423 LVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAG 482

Query: 307 NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
           NW  V  VR +M+A G++K PGCS +EV R V EF AGD +HPR  EI   L E++   +
Sbjct: 483 NWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMAR 542

Query: 367 LAGYVANTN---PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
             G+V  T      + D +   KE  L  HSEK+A+AFGLIS   G  I+IVKNLR C D
Sbjct: 543 ARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACAD 602

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH V K++S+V  R+I+ RDRNRFHHF +G C+C  YW
Sbjct: 603 CHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 115/283 (40%), Gaps = 47/283 (16%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI-HDVKLNEV 90
           A A  G +DLA  +    P+   + + + +  ++  G    AL L   M + H +     
Sbjct: 71  AYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAH 130

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM----------------- 133
           ++ + L AC   G L  GR  H Y  +  L     + TAL+ M                 
Sbjct: 131 TLSASLPAC---GGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGM 187

Query: 134 ---------------YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
                          Y+K G ++ A   F G+  +++  W +++ G   +G   ++L LF
Sbjct: 188 QPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLF 247

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLY 236
             M ++GV P+EV+ V  L     +G  E GR    F +      +         L+D+Y
Sbjct: 248 RRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMY 307

Query: 237 GRAGRLDEALDVINKMPMKPHAG-----AWGALLNACRMYKNT 274
            + G L++A+ V   +     AG     AW A++N   M+ ++
Sbjct: 308 YKCGSLEDAVAVFGDLG----AGDRDIVAWNAMVNGYAMHGHS 346


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/453 (45%), Positives = 302/453 (66%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  +  G++E   VC T +I+  A C DVD A+++FDE+ E   +++NA++ GYA+  +
Sbjct: 150 HCLAIKLGLNENPYVCPT-LINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSR 208

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  +Q   +K N+V+++SVLS+C  LGALD G+W H Y+++N L   V + TA
Sbjct: 209 PNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTA 268

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMY+KCG+++ A+  F  M  R+   W+++I   AM+G G+  + +F  M +A V+P+
Sbjct: 269 LIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPD 328

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+TF+ +L  C   GLV+EG  +F SM   YGI P ++HYGC+VDL GRAG L EA   I
Sbjct: 329 EITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFI 388

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           +++P+KP    W  LL++C  + N E+ +    +++EL+  + G YV+LSN+ A +  W+
Sbjct: 389 DELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWE 448

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  +R++M  KG  K+PGCS IEVD  VHEFF+GD  H     +   L E+ + LK  G
Sbjct: 449 DVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVG 508

Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV +T+ V++ D+E+EEKE TL  HSEK+AI+FGL++   G  IR+VKNLRVC DCH   
Sbjct: 509 YVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAA 568

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+IS + +REII+RD  RFHHFK+GKCSC  YW
Sbjct: 569 KLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 135/253 (53%), Gaps = 5/253 (1%)

Query: 22  DVVCQTAMISACAK---CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           D+   T +I++C +      +D A ++F+ +P+ D + +N+M  GY++     +A+ LF 
Sbjct: 57  DLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFI 116

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
               +++  ++ +  S+L AC    A  QG+  H    +  L     +   L++MY+ C 
Sbjct: 117 KALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCN 176

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +++ A   F  + E  V ++ ++I G A +    ++L LF  ++   ++PN+VT +SVL 
Sbjct: 177 DVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLS 236

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C ++G ++ G+   + +++  G++ +++    L+D+Y + G LD A+ V   M ++   
Sbjct: 237 SCALLGALDLGKWIHEYVKKN-GLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR-DT 294

Query: 259 GAWGALLNACRMY 271
            AW A++ A  M+
Sbjct: 295 QAWSAMIVAYAMH 307


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/494 (43%), Positives = 312/494 (63%), Gaps = 33/494 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDV--------------------- 39
           MY+E G + + +KVF+ + EP+VV   A+++AC +CGDV                     
Sbjct: 150 MYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVM 209

Query: 40  ----------DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
                     +LARK+F EMP +D ++W+ M+ G+A  G   EA   F  +Q   ++ NE
Sbjct: 210 LAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNE 269

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
           VS+   LSAC   GA++ G+  H +IE++     V++  AL+D YSKCGN+  A   F  
Sbjct: 270 VSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFER 329

Query: 150 MKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M E R++ +WTS+I GLAM+G GE++++LF  M+++G+RP+ + F+S+L  C   GL+E+
Sbjct: 330 MPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEK 389

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G E+F  M+  Y IEP +EHYGC+VDLYGRAG+LD+A + I  MP+ P A  W  LL AC
Sbjct: 390 GYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGAC 449

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
            ++ N ++ E    +L EL+  N G +VLLSNIYA +  W  V  VR+ M  + + K PG
Sbjct: 450 SIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPG 509

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG-YVANTNPVMYDIEEEEKE 387
            S+IEVD+ ++ F AG+  +    E    L EI  +L++ G Y+     V++DIE+EEKE
Sbjct: 510 WSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKE 569

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
           D++ +HSEK+A+AFG+  L +G  IRIVKNLRVC DCH V K+ISKV+  EI+VRDR+RF
Sbjct: 570 DSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRF 629

Query: 448 HHFKEGKCSCKGYW 461
           H FK G CSC+ YW
Sbjct: 630 HSFKTGSCSCRDYW 643



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 13/264 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P +  +  + SA +    +D AR++F   P  D    N ++ G A+    + +L  F  
Sbjct: 36  DPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVE 95

Query: 80  MQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+      L+  S   +L A     +L+ G   H     + L   + +GT LV MYS+CG
Sbjct: 96  MRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECG 155

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A   F  M E NV  W +V+      G  + +  +F+ M       N  ++  +L 
Sbjct: 156 FVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFR----NLTSWNVMLA 211

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV---INKMPMK 255
           G    G +E  R+ F  M  +  +      +  ++  +   G   EA      + ++ M+
Sbjct: 212 GYTKAGELELARKLFLEMPVKDDVS-----WSTMIVGFAHNGFFYEAFGFFRELQQVGMR 266

Query: 256 PHAGAWGALLNACRMYKNTEMGEL 279
           P+  +    L+AC      E G++
Sbjct: 267 PNEVSLTGALSACADAGAIEFGKI 290


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/461 (45%), Positives = 304/461 (65%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G +   ++V+D +    +V  TAM+S  AK G V  AR +FD M E+D + W+AM
Sbjct: 261 MYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAM 320

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+  +  EAL LF+ MQ   +  ++++M+SV+SAC ++GAL Q +W H Y ++N  
Sbjct: 321 ISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGF 380

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
             T+ +  AL+DMY+KCGN+ KA + F  M  +NV +W+S+I   AM+G  + ++ LF  
Sbjct: 381 GRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHR 440

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+  + PN VTF+ VL  C   GLVEEG++ F SM  E+ I P  EHYGC+VDLY RA 
Sbjct: 441 MKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRAN 500

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L +A+++I  MP  P+   WG+L++AC+ +   E+GE A+ +L+ELE  + GA V+LSN
Sbjct: 501 HLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSN 560

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA+ K WD V  VR++MK KGV K   CS IEV+ EVH F   D  H + +EI   L  
Sbjct: 561 IYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDA 620

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  +LKL GY  +T+ ++ D+EEEEK++ +  HSEK+A+ +GLI  ++   IRIVKNLR+
Sbjct: 621 VVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRI 680

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SKV   EI++RDR RFHHF  G CSC+ YW
Sbjct: 681 CEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 145/291 (49%), Gaps = 35/291 (12%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G    D   Q+A+I+  A CG +  AR +FD+M  RD + WN M+ GY+Q       L L
Sbjct: 145 GFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKL 204

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           +  M+    + + + + +VLSAC H G L  G+  H +I+ N  ++   + T+LV+MY+ 
Sbjct: 205 YEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYAN 264

Query: 137 CGNMNKAMD-------------------------------FFWGMKERNVYTWTSVIGGL 165
           CG M+ A +                                F  M E+++  W+++I G 
Sbjct: 265 CGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGY 324

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG-LVEEGREHFDSMRREYGIEP 224
           A +    ++L+LF+ M++  + P+++T +SV+  C  VG LV+    H  + +  +G   
Sbjct: 325 AESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRT- 383

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            L     L+D+Y + G L +A +V   MP K +  +W +++NA  M+ + +
Sbjct: 384 -LPINNALIDMYAKCGNLVKAREVFENMPRK-NVISWSSMINAFAMHGDAD 432


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/473 (44%), Positives = 308/473 (65%), Gaps = 12/473 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVV-----------CQTAMISACAKCGDVDLARKMFDEM 49
           MY++ G +   +KVFDG+ + DVV              AMI+   K GD D A ++F +M
Sbjct: 159 MYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQM 218

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P  D + WN M+AGY   G+  +A+ +F +M     + +  ++VSVLSA + L  L +GR
Sbjct: 219 PIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGR 278

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
           W H Y+E+N  ++   LGT+L++MY+KCG +  A+  F  ++++ V  WT++I GL ++G
Sbjct: 279 WIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHG 338

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
               +L LF  M + G++PN + F+ VL  C   GLV++GR++FD M  EY IEP LEHY
Sbjct: 339 MANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHY 398

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
           GCLVD+  RAG L+EA + I  MP+ P+   W +LL   R +   ++GE A+++++E+  
Sbjct: 399 GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAP 458

Query: 290 KNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHP 349
           +  G Y+LLSN+YA S  W++V +VR++M  +G +K PGCS +E    +HEF  GD +HP
Sbjct: 459 ETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHP 518

Query: 350 RYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE-EEEKEDTLCKHSEKVAIAFGLISLKE 408
           +  EI   + E+  +LK  G+V +T  V+  IE E+EKE  L  HSE++AIAFGLI++K 
Sbjct: 519 QTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKP 578

Query: 409 GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           G+PIRI+KNLRVC DCH VTK++SK+++REIIVRD  RFHHFK G CSC  YW
Sbjct: 579 GIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 123/290 (42%), Gaps = 45/290 (15%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
            + P V  +   + +  K  D+  AR +FD +  R  I WN ++  Y +   S + + LF
Sbjct: 45  FNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLF 104

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           H + +H+   +  ++  V+  C  LG + +G+  H    +      V +  +LV+MYSKC
Sbjct: 105 HEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKC 163

Query: 138 GNMNKAMDFFWGMKERNVYTWTSV------------------------------------ 161
           G ++ A   F GM +++V  W S+                                    
Sbjct: 164 GEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDL 223

Query: 162 ------IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
                 I G  +NG    ++++F +M + G RP+  T VSVL     + ++ +GR     
Sbjct: 224 VTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSY 283

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           M +  G E        L+++Y + G ++ AL V   +  K   G W A++
Sbjct: 284 MEKN-GFELDGILGTSLIEMYAKCGCIESALTVFRAI-QKKKVGHWTAII 331



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS--KCGNMNKAMDFFWGM 150
           +S+   C+    ++Q    H +  +  +     + + L+ +YS  K  ++  A   F  +
Sbjct: 20  LSLFQTCSAPQEVEQ---LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRI 76

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
           + R++  W ++I     N      + LF  +    + P+  T   V++GC  +G+V+EG+
Sbjct: 77  QRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGK 135

Query: 211 E-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           + H  +++  +G + +++  G LV++Y + G +D A  V + M +      W +L++ 
Sbjct: 136 QIHGLALKIGFGSDVFVQ--GSLVNMYSKCGEIDCARKVFDGM-IDKDVVLWNSLIDG 190


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/420 (47%), Positives = 292/420 (69%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           AR +FD M +   + W+AM+ GY + G S +A+ LF  MQ   V+ +EV+M+ VL+A   
Sbjct: 200 ARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAAD 259

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           LGAL+  RW   ++E+  +  +VTL  AL+D  +KCG+++ AM  F GMKER + +WTSV
Sbjct: 260 LGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSV 319

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I  LAM G G++++ +F  MK AGVRP++V F+ VL  C   G+V+EG  +F+SMR  YG
Sbjct: 320 IDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYG 379

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELAS 281
           I+P +EHYGC+VD++GRAG ++ A++ ++KMPMKP+   W  L+ ACR +   E+GE  +
Sbjct: 380 IDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETIT 439

Query: 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEF 341
           R L+     +   YV+LSN+YA ++ W     +R+ M  +G+KK+PGCS++E+D EVHEF
Sbjct: 440 RNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEF 499

Query: 342 FAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAF 401
            AGDE+HP++ EI +M+ E++R L+ AG+++ T+ V+ D++EE+KE  L  HSEK+AIAF
Sbjct: 500 IAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAF 559

Query: 402 GLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            L+    G  +R+VKNLRVC DCH   K IS V+NREIIVRDR+RFH FK G CSC  +W
Sbjct: 560 VLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 9/159 (5%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +GI +   +C  A+I A AKCGD+D A  +F  M ER  ++W +++   A  G+ +EA+ 
Sbjct: 276 EGIGKSVTLCN-ALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVA 334

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT----ALV 131
           +F  M+   V+ ++V+ + VL+AC+H G +D+G   + Y E  R+   +         +V
Sbjct: 335 VFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEG---YGYFESMRMAYGIDPKIEHYGCMV 391

Query: 132 DMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNG 169
           DM+ + G + +AM+F   M  + N   W +++     +G
Sbjct: 392 DMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHG 430



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A   F LM       N+ +   +L AC     +  G  AH    +        +   L+ 
Sbjct: 130 AASFFPLMLRSATLPNKFTFPFLLKACAAFPGV--GVQAHAAALKFGFTTDQYVSNTLIH 187

Query: 133 MYSKCGN--MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           MYS  G   +  A + F  M + +  TW+++IGG   +G    ++ LF  M+ +GVRP+E
Sbjct: 188 MYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDE 247

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VT + VL     +G +E  R     + +E GI   +     L+D   + G LD A+ V  
Sbjct: 248 VTMIGVLAAAADLGALELARWVGRFVEKE-GIGKSVTLCNALIDALAKCGDLDGAMAVFQ 306

Query: 251 KMPMKPHAGAWGALLNACRM 270
            M  +    +W ++++A  M
Sbjct: 307 GMKERTIV-SWTSVIDALAM 325


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/492 (42%), Positives = 309/492 (62%), Gaps = 32/492 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G +    ++F+ + E D    T ++   +KCG V+ ARK+FD+MP R+ ++WNAM+
Sbjct: 188 YARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMI 247

Query: 62  AGYAQCGKSREALHLFHLMQIHDV-------------------------------KLNEV 90
            GY + G    AL LF+ M I D+                               + +  
Sbjct: 248 NGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHA 307

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           ++VSVLSA + L  L +GRW H Y+E+N  ++   LGT+L++MY+KCG +  A+  F  +
Sbjct: 308 TLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAI 367

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
           +++ V  WT++I GL ++G    +L LF  M + G++PN + F+ VL  C   GLV++GR
Sbjct: 368 QKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGR 427

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           ++FD M  EY IEP LEHYGCLVD+  RAG L+EA + I  MP+ P+   W +LL   R 
Sbjct: 428 QYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRN 487

Query: 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS 330
           +   ++GE A+++++E+  +  G Y+LLSN+YA S  W++V +VR++M  +G +K PGCS
Sbjct: 488 HGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 547

Query: 331 VIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE-EEEKEDT 389
            +E    +HEF  GD +HP+  EI   + E+  +LK  G+V +T  V+  IE E+EKE  
Sbjct: 548 SVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAE 607

Query: 390 LCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHH 449
           L  HSE++AIAFGLI++K G+PIRI+KNLRVC DCH VTK++SK+++REIIVRD  RFHH
Sbjct: 608 LENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHH 667

Query: 450 FKEGKCSCKGYW 461
           FK G CSC  YW
Sbjct: 668 FKNGSCSCMDYW 679



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 12/245 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV  Q ++++  +KCG++D ARK+FD M ++D + WN+++ GYA+CG+   AL LF  M 
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE-RNRLKMTVTLGTALVDMYSKCGNM 140
             D   +   +V  LS C   G ++  R     +  RN +        A+++ Y K G+ 
Sbjct: 206 ERDA-FSWTVLVDGLSKC---GKVESARKLFDQMPCRNLVSW-----NAMINGYMKSGDF 256

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A++ F+ M   ++ TW  +I G  +NG    ++++F +M + G RP+  T VSVL   
Sbjct: 257 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             + ++ +GR     M +  G E        L+++Y + G ++ AL V   +  K   G 
Sbjct: 317 SGLAVLGKGRWIHSYMEKN-GFELDGILGTSLIEMYAKCGCIESALTVFRAI-QKKKVGH 374

Query: 261 WGALL 265
           W A++
Sbjct: 375 WTAII 379



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 116/237 (48%), Gaps = 10/237 (4%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
            + P V  +   + +  K  D+  AR +FD +  R  I WN ++  Y +   S + + LF
Sbjct: 42  FNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLF 101

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           H + +H+   +  ++  V+  C  LG + +G+  H    +      V +  +LV+MYSKC
Sbjct: 102 HEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKC 160

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G ++ A   F GM +++V  W S+I G A  G  + +L+LF  M +     +  ++  ++
Sbjct: 161 GEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLV 216

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            G    G VE  R+ FD M         L  +  +++ Y ++G  D AL++  +MP+
Sbjct: 217 DGLSKCGKVESARKLFDQMPCRN-----LVSWNAMINGYMKSGDFDSALELFYQMPI 268


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/437 (45%), Positives = 296/437 (67%), Gaps = 4/437 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           +++   +KCG+++ A  +F+ +  +D I+WN ++ GY      +EAL LF  M     + 
Sbjct: 306 SLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERP 365

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+S+L AC HLGA+D GRW HVYI++ RLK      +L T+L+DMY+KCG++  A 
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKSATNASSLRTSLIDMYAKCGDIEAAH 424

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +  +++ +W ++I G AM+G  + + ++FS M++ G+ P+++TFV +L  C   G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSG 484

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F +M ++Y I P LEHYGC++DL G +G   EA ++IN M M+P    W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSL 544

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC++  N E+GE  ++ L+++E +N G YVLLSNIYA +  W+ V  +R ++  KG+K
Sbjct: 545 LKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMK 604

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 724

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHF++G CSC  YW
Sbjct: 725 TRFHHFRDGVCSCNDYW 741



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 155/272 (56%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G L   +KVFD     DVV  TA+I   A  G ++ A+K+FDE+P +D ++WNAM
Sbjct: 178 VYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAM 237

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  +EAL LF  M   +++ +E +MV+V+SAC   G+++ GR  H +I+ +  
Sbjct: 238 ISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGF 297

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  +L+D+YSKCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 298 GSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQE 357

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G RPN+VT +S+L  C  +G ++ GR  H    +R             L+D+Y + 
Sbjct: 358 MLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKC 417

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V N + +     +W A++    M+
Sbjct: 418 GDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMH 448



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 116/272 (42%), Gaps = 36/272 (13%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGY 64
           L + Q +  G+H  +    + ++  C      D    A  +F+ + E + + WN M  G+
Sbjct: 51  LIHAQMIKTGLHNTNYAL-SKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 109

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH------------ 112
           A       AL L+  M    +  N  +   +L +C    A  +G+  H            
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDL 169

Query: 113 --------VYIERNRLK-----------MTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
                   VY++  RL+             V   TAL+  Y+  G +  A   F  +  +
Sbjct: 170 FVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVK 229

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V +W ++I G A  G  +++LELF  M +  +RP+E T V+V+  C   G +E GR+  
Sbjct: 230 DVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQ-V 288

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            S   ++G    L+    L+DLY + G L+ A
Sbjct: 289 HSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 41/226 (18%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +T++I   AKCGD++ A ++F+ +  +   +WNAM+ G+A  G++  A  +F  M+   +
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGI 466

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + ++++ V +LSAC+  G LD GR  H++        T+T    +       G M     
Sbjct: 467 EPDDITFVGLLSACSRSGMLDLGR--HIF-------RTMTQDYKITPKLEHYGCM----- 512

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
                           I  L  +G  +++ E+ + M+   + P+ V + S+L+ C + G 
Sbjct: 513 ----------------IDLLGHSGLFKEAEEMINNME---MEPDGVIWCSLLKACKIRGN 553

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLV---DLYGRAGRLDEALDV 248
           VE G     ++ +   IEP  E+ GC V   ++Y  AGR +E   +
Sbjct: 554 VELGESFAQNLIK---IEP--ENPGCYVLLSNIYATAGRWNEVAKI 594


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/445 (45%), Positives = 298/445 (66%), Gaps = 2/445 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+     VC  +++   AKC  V+ A+++F+ M  +D + W  M+  YA C  + E+L L
Sbjct: 131 GLLSDHFVC-ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVL 188

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M+   V  ++V+MV+V++AC  LGA+ + R+A+ YI RN   + V LGTA++DMY+K
Sbjct: 189 FDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAK 248

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A + F  MKE+NV +W+++I     +G G+ +++LF +M    + PN VTFVS+
Sbjct: 249 CGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSL 308

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GL+EEG   F+SM  E+ + P ++HY C+VDL GRAGRLDEAL +I  M ++ 
Sbjct: 309 LYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEK 368

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               W ALL ACR++   E+ E A+  L+EL+ +N G YVLLSNIYA++  W++V   R 
Sbjct: 369 DERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRD 428

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  + +KK+PG + IEVD + ++F  GD +HP+  EI  ML  + ++L++AGYV +T+ 
Sbjct: 429 MMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDF 488

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+ D+EEE K++ L  HSEK+AIAFGLI++ EG PIRI KNLRVC DCH  +KM+S +  
Sbjct: 489 VLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMR 548

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R IIVRD NRFHHF +G CSC  YW
Sbjct: 549 RSIIVRDANRFHHFNDGTCSCGDYW 573



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 120/247 (48%), Gaps = 5/247 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+V    ++   A+   +D A  +FD +  RD   W+ M+ G+A+ G        F  + 
Sbjct: 34  DLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELL 93

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  +  ++  V+  C     L  GR  H  + ++ L     +  +LVDMY+KC  + 
Sbjct: 94  RCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVE 153

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  +++ TWT +IG  A   A E SL LF  M++ GV P++V  V+V+  C 
Sbjct: 154 DAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREEGVVPDKVAMVTVVNACA 212

Query: 202 VVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +G +   R   D + R  + ++  L     ++D+Y + G ++ A +V ++M  K +  +
Sbjct: 213 KLGAMHRARFANDYIVRNGFSLDVILG--TAMIDMYAKCGSVESAREVFDRMKEK-NVIS 269

Query: 261 WGALLNA 267
           W A++ A
Sbjct: 270 WSAMIAA 276



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           R  H ++  N     + +   L+  Y++   ++ A   F G+  R+  TW+ ++GG A  
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G        F  + + GV P+  T   V+R C     ++ GR   D + + +G+    +H
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLK-HGLLS--DH 136

Query: 229 YGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA---CRMYKN 273
           + C  LVD+Y +   +++A  +  +M  K     W  ++ A   C  Y++
Sbjct: 137 FVCASLVDMYAKCIVVEDAQRLFERMLSKDLV-TWTVMIGAYADCNAYES 185


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/433 (49%), Positives = 282/433 (65%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           M++  A+ G V + +K+FDEMPERD I+WN ML  Y   GK  EAL  F  M+   +  +
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           E ++V++LSA   L  L+ G+  H  I+   L MT+++GTAL+DMY+KCG + ++   F 
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R+V TW  +I GLA +G G+ +L LF      G+ P  VTFV VL  C   GLV+E
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           GR +F  M   YGIEP +EHYGC+VDL GRAG + EA+ VI  M + P    W  +L AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R++   E+GE    +L+EL+    G YV L++IYA S+ W+ V+ VR++M  +   K+ G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKED 388
            S+IE   +VH F AG   H +  EI+ ML  I  RL  AGYV N +PV++DI EEEKE+
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKEN 360

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
            +  HSE++AIAFGL+    G  IRIVKNLRVCWDCH+VTKMIS+VF REIIVRD +RFH
Sbjct: 361 AIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFH 420

Query: 449 HFKEGKCSCKGYW 461
           HFKEGKCSC  YW
Sbjct: 421 HFKEGKCSCLDYW 433


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/446 (46%), Positives = 291/446 (65%), Gaps = 1/446 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +G+ E  V   TA +    KCG+++ AR +FDEM  RD +AW AM+ GYA  G  REAL 
Sbjct: 71  EGVAE-SVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALD 129

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  MQ+   K +  ++V  LSACT LGALD GR A   +  + +     LGTAL+DMY+
Sbjct: 130 LFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYA 189

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG+ ++A   F  M ER++  W ++I GL M G  + +  L   MK++GV+ N+ TF+ 
Sbjct: 190 KCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIG 249

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C   GLV +GR++F +M   Y I P +EHYGC+VDL+ RAG L+EA  +I  MPM 
Sbjct: 250 LLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPML 309

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
            +A  WGALL  C++++N ++ E A ++L+ LE  N G YV+LSNIY+ S  W+    +R
Sbjct: 310 ANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLR 369

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
             MKAKG++K+P  S +E+D +VH+F+ GD++HP  ++I   L E+   +K  GY   T 
Sbjct: 370 LEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTE 429

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            VM+D+E EEKE+TL  HSEK+AIAF LI+ + G  IR+ KNLRVC DCH   K+IS++ 
Sbjct: 430 VVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSAIKLISRIT 489

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REI+VRD NRFH F++G CSC  YW
Sbjct: 490 CREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 16/212 (7%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           MP    ++W A++A Y   G + EA+ +        ++ +  + V VL+AC  +  L+ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 109 R--WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
              WA    E   +  +V + TA +D+Y KCG M KA   F  MK R+   W +++GG A
Sbjct: 61  EAVWAAARQEEG-VAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG   ++L+LF  M+  G +P+  T V  L  C  +G ++ GR+         G+  W 
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQ-------AVGMVHWD 172

Query: 227 EHYG------CLVDLYGRAGRLDEALDVINKM 252
           E  G       L+D+Y + G   EA  V  +M
Sbjct: 173 EVLGNPVLGTALIDMYAKCGSTSEAWMVFQQM 204



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M   +  +WT++I      G   +++ +      +G+RP+  T V VL  C  V  +E G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              + + R+E G+   +      +DLY + G +++A  V ++M  +  A AWGA++
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRD-AVAWGAMV 115


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/462 (45%), Positives = 296/462 (64%), Gaps = 5/462 (1%)

Query: 4   ELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           ELGCL    +V + +     + +V    A+I+  +KC  VDLA  +FDE+  R  ++WNA
Sbjct: 274 ELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNA 333

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ G AQ G S +A+ LF  MQ+ +VK +  ++VSV+ A   +    Q RW H Y  R  
Sbjct: 334 MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH 393

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L   V + TAL+DMY+KCG +N A   F   +ER+V TW ++I G   +G G+ ++ELF 
Sbjct: 394 LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFE 453

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK  G+ PNE TF+SVL  C   GLV+EGRE+F SM+ +YG+EP +EHYG +VDL GRA
Sbjct: 454 EMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRA 513

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G+LDEA   I KMPM P    +GA+L AC+++KN E+ E +++K+ EL  +    +VLL+
Sbjct: 514 GKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLA 573

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA +  W  V  VR  M+  G++K PG S+I++  E+H F++G   H +  EI   L 
Sbjct: 574 NIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLA 633

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++   +K  GYV +T+ + +D+E++ K   L  HSEK+AIAFGLI    G  I+I KNLR
Sbjct: 634 KLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLR 692

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH+ TK+IS V  REII+RD  RFHHFK+GKCSC  YW
Sbjct: 693 VCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 4/241 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++ A  KCGD+  AR +FD MP ++ ++WNAM+ GYAQ G SREAL LF+ M    V 
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           + +VS+++ L AC  LG LD+G   H  + R  L   V++  AL+ MYSKC  ++ A   
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +  R   +W ++I G A NG  E ++ LF+ M+   V+P+  T VSV+     +   
Sbjct: 320 FDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDP 379

Query: 207 EEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + R  H  S+R     + ++     L+D+Y + GR++ A  + N    + H   W A++
Sbjct: 380 LQARWIHGYSIRLHLDQDVYV--LTALIDMYAKCGRVNIARILFNSARER-HVITWNAMI 436

Query: 266 N 266
           +
Sbjct: 437 H 437



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 157/286 (54%), Gaps = 6/286 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + + +  TA+ +  AKC     AR++FD MP RD +AWNA++AGYA+ G +R A+ +   
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 80  MQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ  +  + + +++VSVL AC +  AL   R AH +  R+ L+  V + TA++D Y KCG
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCG 210

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  M  +N  +W ++I G A NG   ++L LF+ M + GV   +V+ ++ L+
Sbjct: 211 DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQ 270

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +G ++EG    + + R  G++  +     L+ +Y +  R+D A  V +++  +   
Sbjct: 271 ACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQV 329

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYA 303
            +W A++  C     +E    L +R  ++LE     ++ L+S I A
Sbjct: 330 -SWNAMILGCAQNGCSEDAVRLFTR--MQLENVKPDSFTLVSVIPA 372



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 5/178 (2%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +  S+L  C   G L  GR  H  +    +       TAL +MY+KC     A   F  M
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEG 209
             R+   W +++ G A NG    ++E+   M+ + G RP+ +T VSVL  C     +   
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           RE H  ++R   G+E  +     ++D Y + G +  A  V + MP K ++ +W A+++
Sbjct: 181 REAHAFAIRS--GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK-NSVSWNAMID 235


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/424 (49%), Positives = 293/424 (69%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V  Q  ++   A CG  + A K+F+ M ER+ + WN+++ GYA  G+  EAL LF  M +
Sbjct: 30  VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGL 89

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             V+ +  +MVS+LSAC  LGAL  GR AHVY+ +  L   +  G AL+D+Y+KCG++ +
Sbjct: 90  RGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQ 149

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  M+E++V +WTS+I GLA+NG G+++LELF  +++ G+ P+E+TFV VL  C  
Sbjct: 150 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            G+V+EG ++F  M+ EYGI P +EHYGC+VDL GRAG + +A + I  MPM+P+A  W 
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 269

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
            LL AC ++ +  +GE+A  +L++LE K+ G YVLLSN+YA  + W  V  VR+ M  +G
Sbjct: 270 TLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREG 329

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           VKK PG S++E+   +HEF  GD +HP+  EI V L EI++ LKL GYV + + V+ DIE
Sbjct: 330 VKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIE 389

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           EEEKE  L  HSEK+AIAF LI+   G+PIR+VKNLRVC DCH   K+ISKVF+REI+VR
Sbjct: 390 EEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVR 449

Query: 443 DRNR 446
           DR+R
Sbjct: 450 DRSR 453



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 2/168 (1%)

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
           A   L  + +G   H    RN  +  V +   LV MY+ CG+   A   F  M ERN+ T
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           W SVI G A+NG   ++L LF  M   GV P+  T VS+L  C  +G +  GR     M 
Sbjct: 64  WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 123

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +  G++  L     L+DLY + G + +A  V ++M  K    +W +L+
Sbjct: 124 K-VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK-SVVSWTSLI 169



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 43/190 (22%)

Query: 20  EPDVVCQTAMISAC-----------------------------------AKCGDVDLARK 44
           EPD     +++SAC                                   AKCG +  A K
Sbjct: 93  EPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHK 152

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +FDEM E+  ++W +++ G A  G  +EAL LF  ++   +  +E++ V VL AC+H G 
Sbjct: 153 VFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGM 212

Query: 105 LDQGRWAHVYIERNRLKMTVTLGT----ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWT 159
           +D+G     Y +R + +  +         +VD+  + G + +A +F   M  + N   W 
Sbjct: 213 VDEG---FDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 269

Query: 160 SVIGGLAMNG 169
           +++G   ++G
Sbjct: 270 TLLGACTIHG 279


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/462 (45%), Positives = 296/462 (64%), Gaps = 5/462 (1%)

Query: 4   ELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           ELGCL    +V + +     + +V    A+I+  +KC  VDLA  +FDE+  R  ++WNA
Sbjct: 274 ELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNA 333

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ G AQ G S +A+ LF  MQ+ +VK +  ++VSV+ A   +    Q RW H Y  R  
Sbjct: 334 MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH 393

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L   V + TAL+DMY+KCG +N A   F   +ER+V TW ++I G   +G G+ ++ELF 
Sbjct: 394 LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFE 453

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK  G+ PNE TF+SVL  C   GLV+EGRE+F SM+ +YG+EP +EHYG +VDL GRA
Sbjct: 454 EMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRA 513

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G+LDEA   I KMPM P    +GA+L AC+++KN E+ E +++K+ EL  +    +VLL+
Sbjct: 514 GKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLA 573

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA +  W  V  VR  M+  G++K PG S+I++  E+H F++G   H +  EI   L 
Sbjct: 574 NIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLA 633

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++   +K  GYV +T+ + +D+E++ K   L  HSEK+AIAFGLI    G  I+I KNLR
Sbjct: 634 KLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLR 692

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH+ TK+IS V  REII+RD  RFHHFK+GKCSC  YW
Sbjct: 693 VCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 4/241 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++ A  KCGD+  AR +FD MP ++ ++WNAM+ GYAQ G SREAL LF+ M    V 
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           + +VS+++ L AC  LG LD+G   H  + R  L   V++  AL+ MYSKC  ++ A   
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +  R   +W ++I G A NG  E ++ LF+ M+   V+P+  T VSV+     +   
Sbjct: 320 FDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDP 379

Query: 207 EEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + R  H  S+R     + ++     L+D+Y + GR++ A  + N    + H   W A++
Sbjct: 380 LQARWIHGYSIRLHLDQDVYV--LTALIDMYAKCGRVNIARILFNSARER-HVITWNAMI 436

Query: 266 N 266
           +
Sbjct: 437 H 437



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 161/296 (54%), Gaps = 7/296 (2%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q    GI + + +  TA+ +  AKC     AR++FD MP RD +AWNA++AGYA+ G 
Sbjct: 82  HAQLAARGI-DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGL 140

Query: 70  SREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           +R A+ +   MQ  +  + + +++VSVL AC +  AL   R AH +  R+ L+  V + T
Sbjct: 141 ARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVAT 200

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           A++D Y KCG++  A   F  M  +N  +W ++I G A NG   ++L LF+ M + GV  
Sbjct: 201 AILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDV 260

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            +V+ ++ L+ C  +G ++EG    + + R  G++  +     L+ +Y +  R+D A  V
Sbjct: 261 TDVSVLAALQACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYA 303
            +++  +    +W A++  C     +E    L +R  ++LE     ++ L+S I A
Sbjct: 320 FDELDRRTQV-SWNAMILGCAQNGCSEDAVRLFTR--MQLENVKPDSFTLVSVIPA 372



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 5/178 (2%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +  S+L  C   G L  GR  H  +    +       TAL +MY+KC     A   F  M
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEG 209
             R+   W +++ G A NG    ++E+   M+ + G RP+ +T VSVL  C     +   
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           RE H  ++R   G+E  +     ++D Y + G +  A  V + MP K ++ +W A+++
Sbjct: 181 REAHAFAIRS--GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK-NSVSWNAMID 235


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/440 (47%), Positives = 283/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I+  +K G +  AR++FD MP+RD ++W  +L  YA C +  E+   F  M 
Sbjct: 365 DVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQML 424

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK N+++ + VL AC++  AL  G+  H  + +  L   + +  AL+ MY KCG++ 
Sbjct: 425 QQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVE 484

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F GM  R+V TW ++IGGL  NG G ++L+ + +MK  G+RPN  TFV+VL  C 
Sbjct: 485 DAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACR 544

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           V  LVEEGR  F  M ++YGI P  +HY C+VD+  RAG L EA DVI  +P+KP A  W
Sbjct: 545 VCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMW 604

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACR++ N E+GE A+   ++LE +N G YV LS IYA +  W  V  +R+ MK +
Sbjct: 605 GALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKER 664

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK PG S IE+  EVH F A D++HPR  EI   L  + +++K  GYV +T  VM+D+
Sbjct: 665 GVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDL 724

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           ++E KE  +C HSEK+AIA+GLIS   G PIRI KNLRVC DCH  TK ISK+  REII 
Sbjct: 725 DDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIA 784

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD +RFHHFK G+CSC  YW
Sbjct: 785 RDAHRFHHFKNGECSCGDYW 804



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 132/231 (57%), Gaps = 3/231 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P+V     ++   A CG V+ AR++FD+   +  ++WN M++GYA  G ++EA +LF L
Sbjct: 60  KPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTL 119

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   ++ ++ + VS+LSAC+    L+ GR  HV +    L    T+G AL+ MY+KCG+
Sbjct: 120 MQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGS 179

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M  R+  +WT++ G  A +G GE+SL+ +  M Q  VRP+ +T+++VL  
Sbjct: 180 VRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA 239

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           C  +  +E+G++ H   +  EY  +  +     L  +Y + G   +A +V 
Sbjct: 240 CGSLAALEKGKQIHAHIVESEYHSDVRVS--TALTKMYMKCGAFKDAREVF 288



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A+IS  AKCG V  AR++FD M  RD ++W  +   YA+ G   E+L  +H M 
Sbjct: 163 DTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAML 222

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ + ++ ++VLSAC  L AL++G+  H +I  +     V + TAL  MY KCG   
Sbjct: 223 QERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFK 282

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  +  R+V  W ++I G   +G  E++   F  M + GV P+  T+ +VL  C 
Sbjct: 283 DAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACA 342

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G +  G+E      ++ G+   +     L+++Y +AG + +A  V ++MP K    +W
Sbjct: 343 RPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSW 400

Query: 262 GALL 265
             LL
Sbjct: 401 TTLL 404



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 3/243 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           + +  +  DV   TA+     KCG    AR++F+ +  RD IAWN M+ G+   G+  EA
Sbjct: 256 IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEA 315

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
              FH M    V  +  +  +VLSAC   G L +G+  H    ++ L   V  G AL++M
Sbjct: 316 HGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINM 375

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           YSK G+M  A   F  M +R+V +WT+++G  A      +S   F  M Q GV+ N++T+
Sbjct: 376 YSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITY 435

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           + VL+ C     ++ G+E H + ++   G+   L     L+ +Y + G +++A+ V   M
Sbjct: 436 MCVLKACSNPVALKWGKEIHAEVVKA--GLLADLAVTNALMSMYFKCGSVEDAIRVFEGM 493

Query: 253 PMK 255
            M+
Sbjct: 494 SMR 496



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           +++    V +L +C     L  G+  H +I R  +K  V +   L+ +Y+ CG++N+A  
Sbjct: 25  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQ 84

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F     ++V +W  +I G A  G  +++  LF+LM+Q  + P++ TFVS+L  C    +
Sbjct: 85  LFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAV 144

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  GRE H   M  E G+         L+ +Y + G + +A  V + M  +    +W  L
Sbjct: 145 LNWGREIHVRVM--EAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEV-SWTTL 201

Query: 265 LNACRMYKNTEMGE 278
             A   Y  +  GE
Sbjct: 202 TGA---YAESGYGE 212


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/495 (43%), Positives = 305/495 (61%), Gaps = 35/495 (7%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACA-------------------------- 34
            YAE G + +  KVF+G+ E +VV  T++I   A                          
Sbjct: 175 FYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVNALVD 234

Query: 35  ---KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
              KCG +D A+++FDE  +R+ + +N +L+ YA+ G +REAL +   M     + + V+
Sbjct: 235 MYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVT 294

Query: 92  MVSVLSACTHL-----GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           M+S +SA   L     G +  G W H YIE+N +   + L TALVDM+++CG+   AM  
Sbjct: 295 MLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQV 354

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M ER+V  WT+ IG +AM G GE +  LF+ M   GV+P+ V FV VL  C   G V
Sbjct: 355 FNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQV 414

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E+G  H  S+  ++GI P +EHYGC+VDL GRAG L EA D+I  MPM+P+   WG+LL 
Sbjct: 415 EQGL-HIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLA 473

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++KN EM   A+ ++ EL  +  G +VLLSNIYA +  W  V  VR  ++ KGV+K+
Sbjct: 474 ACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKV 533

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PG S ++V+  +HEF +GDE+HP    I +ML E++ R   AG++ + + V+ D++E+EK
Sbjct: 534 PGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEK 593

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L +HSEK+AIAFGLI+    +PIR+VKNLR+C DCH   KM S ++NREIIVRD NR
Sbjct: 594 EYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNR 653

Query: 447 FHHFKEGKCSCKGYW 461
           FH F++G CSC  YW
Sbjct: 654 FHFFRQGLCSCCDYW 668



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 22/252 (8%)

Query: 10  YCQKVFDGIHE-PDVVCQTAMISACAKCGD---VDLARKMFDEMPE--RDPIAW---NAM 60
           +CQ   +G+ + P  +  T +++A A+      +D ARK F+   E  R   A    N++
Sbjct: 45  HCQITKNGLDQIPSTL--TKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSL 102

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY+  G  REA+ L+  M +  V  N  +   VLS CT + A  +G   H  + +  L
Sbjct: 103 IRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGL 162

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  V +   L+  Y++CG+M+     F GM ERNV +WTS+I G A     ++++ LF  
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M       N+V   +++      G ++  +  FD       ++  L  Y  ++  Y R G
Sbjct: 223 ML------NKVMVNALVDMYMKCGAIDAAKRLFDEC-----VDRNLVLYNTILSNYARQG 271

Query: 241 RLDEALDVINKM 252
              EAL ++++M
Sbjct: 272 LAREALAILDEM 283


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 301/442 (68%), Gaps = 3/442 (0%)

Query: 23  VVCQTAMISACAKCGD--VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-L 79
           V     ++ A AK G+  V +ARK+FD++ ++D +++N++++ YAQ G S EA  +F  L
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++   V  N +++ +VL A +H GAL  G+  H  + R  L+  V +GT+++DMY KCG 
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  MK +NV +WT++I G  M+G   K+LELF  M  +GVRPN +TFVSVL  
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAA 397

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL  EG   F++M+  +G+EP LEHYGC+VDL GRAG L +A D+I +M MKP + 
Sbjct: 398 CSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSI 457

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +LL ACR++KN E+ E++  +L EL++ N G Y+LLS+IYA++  W  V  VR IMK
Sbjct: 458 IWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK 517

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+ K PG S++E++ EVH F  GDE HP+  +I   L E++R+L  AGYV+NT+ V +
Sbjct: 518 NRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCH 577

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D++EEEKE TL  HSEK+AIAFG+++   G  + +VKNLRVC DCH+V K+ISK+ +RE 
Sbjct: 578 DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREF 637

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD  RFHHFK+G CSC  YW
Sbjct: 638 VVRDAKRFHHFKDGGCSCGDYW 659



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 140/269 (52%), Gaps = 11/269 (4%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q+ F   ++ D+   +A+I   + CG ++ ARK+FDE+P+R+ ++W +M+ GY   G + 
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 72  EALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           +A+ LF  + + +      + L+ + +VSV+SAC+ + A       H ++ +      V+
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 126 LGTALVDMYSKC--GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMK 182
           +G  L+D Y+K   G +  A   F  + +++  ++ S++   A +G   ++ E+F  L+K
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
              V  N +T  +VL      G +  G+   D + R  G+E  +     ++D+Y + GR+
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRV 338

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMY 271
           + A    ++M  K +  +W A++    M+
Sbjct: 339 ETARKAFDRMKNK-NVRSWTAMIAGYGMH 366



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV+  T++I    KCG V+ ARK FD M  ++  +W AM+AGY   G + +AL LF  
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M    V+ N ++ VSVL+AC+H G   +G RW +    R  ++  +     +VD+  + G
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGG 164
            + KA D    MK + +   W+S++  
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAA 465



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 19/200 (9%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
           D  +WN+++A  A+ G S EAL  F  M+   +     S    + AC+ L  +  G+  H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
                   +  + + +AL+ MYS CG +  A   F  + +RN+ +WTS+I G  +NG   
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNG--- 156

Query: 173 KSLELFSLMKQAGVRPNE---------VTFVSVLRGCCVV---GLVEEGREHFDSMRREY 220
            +L+  SL K   V  N+         +  VSV+  C  V   GL E       S   + 
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTES----IHSFVIKR 212

Query: 221 GIEPWLEHYGCLVDLYGRAG 240
           G +  +     L+D Y + G
Sbjct: 213 GFDRGVSVGNTLLDAYAKGG 232



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V++W SVI  LA +G   ++L  FS M++  + P   +F   ++ C  +  +  G++  
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
                 +G +  +     L+ +Y   G+L++A  V +++P K +  +W +++    +  N
Sbjct: 100 QQA-FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRGYDLNGN 157

Query: 274 T 274
            
Sbjct: 158 A 158


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 301/442 (68%), Gaps = 3/442 (0%)

Query: 23  VVCQTAMISACAKCGD--VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-L 79
           V     ++ A AK G+  V +ARK+FD++ ++D +++N++++ YAQ G S EA  +F  L
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++   V  N +++ +VL A +H GAL  G+  H  + R  L+  V +GT+++DMY KCG 
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  MK +NV +WT++I G  M+G   K+LELF  M  +GVRPN +TFVSVL  
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAA 397

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL  EG   F++M+  +G+EP LEHYGC+VDL GRAG L +A D+I +M MKP + 
Sbjct: 398 CSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSI 457

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +LL ACR++KN E+ E++  +L EL++ N G Y+LLS+IYA++  W  V  VR IMK
Sbjct: 458 IWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK 517

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+ K PG S++E++ EVH F  GDE HP+  +I   L E++R+L  AGYV+NT+ V +
Sbjct: 518 NRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCH 577

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D++EEEKE TL  HSEK+AIAFG+++   G  + +VKNLRVC DCH+V K+ISK+ +RE 
Sbjct: 578 DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREF 637

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD  RFHHFK+G CSC  YW
Sbjct: 638 VVRDAKRFHHFKDGGCSCGDYW 659



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 140/269 (52%), Gaps = 11/269 (4%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q+ F   ++ D+   +A+I   + CG ++ ARK+FDE+P+RD ++W +M+ GY   G + 
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNAL 159

Query: 72  EALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           +A+ LF  + + +      + L+ + +VSV+SAC+ + A       H ++ +      V+
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 126 LGTALVDMYSKC--GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMK 182
           +G  L+D Y+K   G +  A   F  + +++  ++ S++   A +G   ++ E+F  L+K
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
              V  N +T  +VL      G +  G+   D + R  G+E  +     ++D+Y + GR+
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRV 338

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMY 271
           + A    ++M  K +  +W A++    M+
Sbjct: 339 ETARKAFDRMKNK-NVRSWTAMIAGYGMH 366



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV+  T++I    KCG V+ ARK FD M  ++  +W AM+AGY   G + +AL LF  
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M    V+ N ++ VSVL+AC+H G   +G RW +    R  ++  +     +VD+  + G
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGG 164
            + KA D    MK + +   W+S++  
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAA 465



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 19/200 (9%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
           D  +WN+++A  A+ G S EAL  F  M+   +     S    + AC+ L  +  G+  H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
                   +  + + +AL+ MYS CG +  A   F  + +R++ +WTS+I G  +NG   
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNG--- 156

Query: 173 KSLELFSLMKQAGVRPNE---------VTFVSVLRGCCVV---GLVEEGREHFDSMRREY 220
            +L+  SL K   V  N+         +  VSV+  C  V   GL E       S   + 
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTES----IHSFVIKR 212

Query: 221 GIEPWLEHYGCLVDLYGRAG 240
           G +  +     L+D Y + G
Sbjct: 213 GFDRGVSVGNTLLDAYAKGG 232



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V++W SVI  LA +G   ++L  FS M++  + P   +F   ++ C  +  +  G++  
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
                 +G +  +     L+ +Y   G+L++A  V +++P K    +W +++    +  N
Sbjct: 100 QQA-FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRDIVSWTSMIRGYDLNGN 157

Query: 274 T 274
            
Sbjct: 158 A 158


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/442 (45%), Positives = 293/442 (66%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A++   AK G VD AR +F+ +P +D I+WN +++GYAQ G + EA+ ++++M+
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIME 442

Query: 82  IH--DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
               ++  N+ + VSVL AC+  GAL QG   H  + +N L + V +GT+L DMY KCG 
Sbjct: 443 EEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGR 502

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F+ +   N   W ++I     +G GEK++ LF  M   GV+P+ +TFV++L  
Sbjct: 503 LDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSA 562

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG   F+ M+ +YGI P L+HYGC+VDLYGRAG+L+ AL+ I  MP++P A 
Sbjct: 563 CSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDAS 622

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+ACR++ N ++G++AS  L E+E ++ G +VLLSN+YA +  W+ V  +R I  
Sbjct: 623 IWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITS 682

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG++K PG S +EVD +V  F+ G++THP Y E+   L  +  +LK+ GYV +   V+ 
Sbjct: 683 GKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQ 742

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E++EKE  L  HSE++A+AF LI+      IRI KNLRVC DCH VTK ISK+  REI
Sbjct: 743 DVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREI 802

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHFK G CSC  YW
Sbjct: 803 IVRDSNRFHHFKNGVCSCGDYW 824



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 165/338 (48%), Gaps = 51/338 (15%)

Query: 9   GYCQK--------VFDGIHEPDVVCQTAMISACAKCGD---------------------- 38
           GYCQ         + DG+   D V   +++SAC + GD                      
Sbjct: 225 GYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 39  ----VDL---------ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
               +DL          +K+FD M  RD I+WN+++  Y    +   A+ LF  M++  +
Sbjct: 285 SNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRI 344

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM-TVTLGTALVDMYSKCGNMNKAM 144
           + + ++++S+ S  + LG +   R    +  R    +  +T+G A+V MY+K G ++ A 
Sbjct: 345 QPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPNEVTFVSVLRGCCV 202
             F  +  ++V +W ++I G A NG   +++E++++M++ G  +  N+ T+VSVL  C  
Sbjct: 405 AVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQ 464

Query: 203 VGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            G + +G + H   ++    ++ ++     L D+YG+ GRLD+AL +  ++P + ++  W
Sbjct: 465 AGALRQGMKLHGRLLKNGLYLDVFVG--TSLADMYGKCGRLDDALSLFYQIP-RVNSVPW 521

Query: 262 GALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLL 298
             L+     + + E   +  +++++   K +H  +V L
Sbjct: 522 NTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 559



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++I    + G V  AR +FDEMP RD  +WNAM++GY Q G ++EAL L   ++
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR 243

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D     V++VS+LSACT  G  ++G   H Y  ++ L+  + +   L+D+Y++ G++ 
Sbjct: 244 AMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLK 299

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  M  R++ +W S+I    +N    +++ LF  M+ + ++P+ +T +S+     
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILS 359

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +G +   R     ++R+ + +E  +     +V +Y + G +D A  V N +P K
Sbjct: 360 QLGEIRACRSVQGFTLRKGWFLED-ITIGNAVVVMYAKLGLVDSARAVFNWLPNK 413



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 13/247 (5%)

Query: 24  VCQTA-MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           VC +A +++     G+V LAR  FD +  RD  AWN M++GY + G S E +  F L  +
Sbjct: 86  VCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFML 145

Query: 83  HD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  +  SVL AC +   +  G   H    +      V +  +L+ +Y + G + 
Sbjct: 146 SSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVV 202

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGC 200
            A   F  M  R++ +W ++I G   +G  +++L L       G+R  + VT VS+L  C
Sbjct: 203 NARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL-----SDGLRAMDSVTVVSLLSAC 257

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G    G     S   ++G+E  L     L+DLY   G L +   V ++M ++    +
Sbjct: 258 TEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLI-S 315

Query: 261 WGALLNA 267
           W +++ A
Sbjct: 316 WNSIIKA 322



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 9/175 (5%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++   CT+L      +  H  +  +     V +   LV++Y   GN+  A   F  +  R
Sbjct: 59  TLFRYCTNL---QSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNR 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSL-MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           +VY W  +I G    G   + +  FSL M  +G++P+  TF SVL+ C    + +  + H
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKAC--RNVTDGNKIH 173

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             +++  +  + ++     L+ LY R G +  A  + ++MP +   G+W A+++ 
Sbjct: 174 CLALKFGFMWDVYVA--ASLIHLYCRYGAVVNARILFDEMPTRD-MGSWNAMISG 225


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/452 (47%), Positives = 295/452 (65%), Gaps = 2/452 (0%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +KVF+ + E DV   T+++   AK G++D A ++F+ MP R+ ++W  M++G+  CG+  
Sbjct: 233 RKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYP 292

Query: 72  EALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           EAL  F  M   D V  NE  +V VLSAC HLGALDQG W H+YI++  ++ +  + TAL
Sbjct: 293 EALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTAL 352

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +DMY+KCG ++ A   F G+ +R+V ++TS+I GL+ +G G+ +L +F  M    V PNE
Sbjct: 353 IDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNE 412

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           +T + VL GC   GLVEEG     +M   +GI P +EHYGC +DL GRAG L+ AL+V+ 
Sbjct: 413 ITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVK 472

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH-GAYVLLSNIYAESKNWD 309
            MPM+P    W ALL+A R++ N  +GE     + +L++ +H G  VLLSN+YA    W+
Sbjct: 473 TMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWE 532

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
           RV  +R++M  +  +  PGCS IEV+  VHEF   D+ HP+  EI   L EI +RL   G
Sbjct: 533 RVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIG 592

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           Y ANT  V +D+ EEEKE  +  HSEK+AIAFGL+S + G  IRIVKNLR C DCH   K
Sbjct: 593 YSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALK 652

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            IS+V+ REI+VRDR+RFH F EG CSCK +W
Sbjct: 653 TISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 118/266 (44%), Gaps = 46/266 (17%)

Query: 27  TAMISACAKCG-DVDLARKMFDEMPERDPIA--WNAMLAGYAQCGKSREALHLFHLMQIH 83
           TA +  C  C  +   AR +FD  P   P    WN M+  Y++   S+E +HLF  M   
Sbjct: 109 TASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTL 168

Query: 84  D----VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           D    V  +E +   V+++C+H  +L  G   H  + ++  +  + +G ++++M S    
Sbjct: 169 DGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFAR 228

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-------------- 185
           M  A   F  M ER+V++WTS++GG A +G  +++ ELF++M                  
Sbjct: 229 MEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGC 288

Query: 186 ------------------VRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEP 224
                             V PNE   V VL  C  +G +++G     + D +    GI  
Sbjct: 289 GRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKI----GIRQ 344

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVIN 250
                  L+D+Y + GR+D A  V N
Sbjct: 345 SSNISTALIDMYAKCGRIDCASRVFN 370


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 294/436 (67%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++ A  K G+   A K+F+ +  +D +AW+AMLAGYAQ G++ EA  LFH +    +K
Sbjct: 432 TALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIK 491

Query: 87  LNEVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            NE +  SV++AC +   A +QG+  H Y  + RL   + + +ALV MY+K GN++ A +
Sbjct: 492 PNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHE 551

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F   KER++ +W S+I G + +G  +K+LE+F  M++  +  + VTF+ V+  C   GL
Sbjct: 552 VFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGL 611

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           VE+G+++F+SM  ++ I P ++HY C++DLY RAG L++A+ +IN+MP  P A  W  LL
Sbjct: 612 VEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLL 671

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            A R+++N E+GELA+ KL+ L+ ++  AYVLLSN+YA + NW    NVR++M  + VKK
Sbjct: 672 GAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKK 731

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG S IEV  + + F AGD THP  N+I   L E+S RLK AGY  +T  V +DIE+E+
Sbjct: 732 EPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQ 791

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSE++AIAFGLI+    +PI+IVKNLRVC DCH+ TK++S V  R I+VRD N
Sbjct: 792 KETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSN 851

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSC  YW
Sbjct: 852 RFHHFKDGLCSCGDYW 867



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 158/324 (48%), Gaps = 16/324 (4%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG   +CQ V  G+ +  V   T+++    K  +V+  R++FDEM ER+ ++W ++LAG
Sbjct: 110 KLGRQVHCQCVKFGLVD-HVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAG 168

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y+  G       LF  MQ   V  N  ++ +V++A  + G +  G   H  + ++  +  
Sbjct: 169 YSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEA 228

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           + +  +L+ +YS+ G +  A D F  M+ R+  TW S+I G   NG   +  E+F+ M+ 
Sbjct: 229 IPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL 288

Query: 184 AGVRPNEVTFVSVLRGCCVV-GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           AGV+P  +TF SV++ C  +  L         +++  +  +  +     L+    +   +
Sbjct: 289 AGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV--ITALMVALSKCKEM 346

Query: 243 DEALDVINKMPMKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKNHGAY------ 295
           D+AL + + M    +  +W A+++ C +   N +   L S+   E    NH  Y      
Sbjct: 347 DDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV 406

Query: 296 ---VLLSNIYAE--SKNWDRVINV 314
              V +S ++AE    N++R  +V
Sbjct: 407 HYPVFVSEMHAEVIKTNYERSSSV 430



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 7/249 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++IS  ++ G +  AR +FD+M  RD + WN+M+AGY + G+  E   +F+ MQ+  VK 
Sbjct: 234 SLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKP 293

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
             ++  SV+ +C  L  L   +       ++       + TAL+   SKC  M+ A+  F
Sbjct: 294 THMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLF 353

Query: 148 WGMKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
             M+E +NV +WT++I G   NG  ++++ LFS M++ GV+PN  T+ ++L     V + 
Sbjct: 354 SLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVS 413

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E    H + ++  Y  E        L+D Y + G   +A+ V   +  K    AW A+L 
Sbjct: 414 E---MHAEVIKTNY--ERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKD-LMAWSAMLA 467

Query: 267 ACRMYKNTE 275
                  TE
Sbjct: 468 GYAQTGETE 476



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 41  LARKMFDEMPERDPI--AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +A  +FD++P R       N +L  Y++  +++EAL+LF  +    ++ +E ++  V + 
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNI 102

Query: 99  CTHLGALDQ--GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
           C   G+LD   GR  H    +  L   V++GT+LVDMY K  N+N     F  M ERNV 
Sbjct: 103 CA--GSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVV 160

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +WTS++ G + NG      ELF  M+  GV PN  T  +V+      G+V  G +   +M
Sbjct: 161 SWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAM 219

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             ++G E  +  +  L+ LY R G L +A DV +KM ++
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR 258



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 124/235 (52%), Gaps = 13/235 (5%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D +  TA++ A +KC ++D A  +F  M E ++ ++W AM++G  Q G + +A++LF  M
Sbjct: 329 DQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQM 388

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   VK N  +  ++L+    +   +     H  + +   + + ++GTAL+D Y K GN 
Sbjct: 389 RREGVKPNHFTYSAILTVHYPVFVSEM----HAEVIKTNYERSSSVGTALLDAYVKLGNT 444

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A+  F  ++ +++  W++++ G A  G  E++ +LF  + + G++PNE TF SV+  C
Sbjct: 445 IDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINAC 504

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLDEALDVINK 251
                  E  + F +    Y I+  L +  C    LV +Y + G +D A +V  +
Sbjct: 505 ASPTAAAEQGKQFHA----YAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKR 555


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/441 (46%), Positives = 294/441 (66%), Gaps = 2/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV   A++   AK G +D A K+F+ +P +D I+WN ++ GYAQ G + EA+ ++ +M+
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 82  -IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              ++  N+ + VS+L A  H+GAL QG   H  + +  L + V + T L+D+Y KCG +
Sbjct: 512 ECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRL 571

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             AM  F+ + + +  TW ++I    ++G  EK+L+LF  M   GV+P+ VTFVS+L  C
Sbjct: 572 VDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSAC 631

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G VEEG+  F  M+ EYGI+P L+HYGC+VDL GRAG L+ A D I  MP++P A  
Sbjct: 632 SHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASI 690

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL ACR++ N E+G+ AS +L E+++KN G YVLLSNIYA    W+ V  VR + + 
Sbjct: 691 WGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARE 750

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G+KK PG S IEV+R+V  F+ G+++HP+  EI   L  ++ ++K  GY+ + + V+ D
Sbjct: 751 RGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQD 810

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EE+EKE  L  HSE++AIAFG+IS     PIRI KNLRVC DCH+ TK IS++  REI+
Sbjct: 811 VEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIV 870

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFHHFK+G CSC  YW
Sbjct: 871 VRDSNRFHHFKDGICSCGDYW 891



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    ++I   ++ G   +AR +FD+MP RD  +WNAM++G  Q G + +AL +   M+
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +K+N V++VS+L  C  LG +      H+Y+ ++ L+  + +  AL++MY+K GN+ 
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M   +V +W S+I     N     +   F  M+  G +P+ +T VS      
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS------ 422

Query: 202 VVGLVEEGRE-------HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +  +V + R+       H   MRR + +E  +     +VD+Y + G LD A  V   +P+
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG-NAVVDMYAKLGLLDSAHKVFEIIPV 481

Query: 255 KPHAGAWGALLNA 267
           K    +W  L+  
Sbjct: 482 K-DVISWNTLITG 493



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 142/259 (54%), Gaps = 6/259 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    A+I+  AK G+++ ARK F +M   D ++WN+++A Y Q      A   F  
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVK 407

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVDMYSKCG 138
           MQ++  + + +++VS+ S           R  H +I  R  L   V +G A+VDMY+K G
Sbjct: 408 MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLG 467

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVL 197
            ++ A   F  +  ++V +W ++I G A NG   +++E++ +M++   + PN+ T+VS+L
Sbjct: 468 LLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                VG +++G + H   ++    ++ ++    CL+D+YG+ GRL +A+ +  ++P + 
Sbjct: 528 PAYAHVGALQQGMKIHGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQES 585

Query: 257 HAGAWGALLNACRMYKNTE 275
               W A+++   ++ + E
Sbjct: 586 SV-TWNAIISCHGIHGHAE 603



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 154/313 (49%), Gaps = 24/313 (7%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++A L   G  Q +F           T +++  A  GDV L+R  FD++P++D  AWN+M
Sbjct: 138 LHALLVVAGKVQSIF---------ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSM 188

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y   G   EA+  F+ L+ + +++ +  +   VL AC   G L  GR  H +  +  
Sbjct: 189 ISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLG 245

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  V +  +L+ MYS+ G    A   F  M  R++ +W ++I GL  NG   ++L++  
Sbjct: 246 FQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLD 305

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M+  G++ N VT VS+L  C  +G +      H   ++  +G+E  L     L+++Y +
Sbjct: 306 EMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK--HGLEFDLFVSNALINMYAK 363

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL- 297
            G L++A     +M +     +W +++ A   Y+  +    A    V+++       +L 
Sbjct: 364 FGNLEDARKAFQQMFIT-DVVSWNSIIAA---YEQNDDPVTAHGFFVKMQLNGFQPDLLT 419

Query: 298 ---LSNIYAESKN 307
              L++I A+S++
Sbjct: 420 LVSLASIVAQSRD 432


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/464 (45%), Positives = 305/464 (65%), Gaps = 4/464 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAK-CGDVDLARKMFDEMPERDPIAWNAM 60
           YA  G L + ++VFDG  + D+V    ++   A+  GD DL R  F  MP RD ++WN +
Sbjct: 121 YAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTV 180

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L+     G+  EA+ +F  ++   + + + V++VSV+SA  +LGAL  G WAH Y+ R  
Sbjct: 181 LSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKC 240

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178
           +++   L +AL++MYSKCG +  A+  F  +  +R++ TW +++ G   NG  E++LELF
Sbjct: 241 IEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALELF 300

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
           + M+   + PN++TF +VL  C   GLVEEG ++F  M R YGIEP + HYGC+VDL+ R
Sbjct: 301 TRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCR 360

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG  ++A ++I  MPM+P A    ALL ACR +KN E+G+    +L+E    +H  YVLL
Sbjct: 361 AGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLL 420

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA   NW  V  VR++M  +GV K PG S +E++  +HEF +GD++H R  +I  ML
Sbjct: 421 SNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKML 480

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           GEI ++LK +GY  +T+ V+ DI++E+ KE +L  HSEK+AIAFGLIS   G PIR+V N
Sbjct: 481 GEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRVVNN 540

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR+C DCH+  K+ISK++ R IIVRD NRFHHF++G CSC  YW
Sbjct: 541 LRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/462 (45%), Positives = 306/462 (66%), Gaps = 2/462 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +G  +KV D +   DV+  T++++A ++  D+  A ++F   P +D +AW AM+
Sbjct: 192 YVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMV 251

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GYAQ     +AL  F  M    + ++EVS+   +SAC  LGA+ +  W     +R+ L 
Sbjct: 252 TGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLG 311

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-L 180
             V +G+ LVDMY+KCG +++A   F GM+E+NVYT++S+I GLA +G    ++ LF+ +
Sbjct: 312 RNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDM 371

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           +++A V PN VTF+ VL  C   G+V+EGR +F  M+  YGI P  +HY C+VDL GRAG
Sbjct: 372 VRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAG 431

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            + EALD++  M ++PH G WGALL ACR++ NT++ ++A++ L +LE +  G YVLLSN
Sbjct: 432 LVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSN 491

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE-VDREVHEFFAGDETHPRYNEIEVMLG 359
             A +  WD V  VR++M+ +G+KK P  S  E  D  VH+FFAGD THP  +EI+  L 
Sbjct: 492 TLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTLL 551

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  RLKLAGYV   + V+Y++ +EEKE  L  HSEK+A++FGL++L+    IRIVKNLR
Sbjct: 552 ELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLESRSSIRIVKNLR 611

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH   +++SKV   EIIVRD  RFHHF++G+CSC G+W
Sbjct: 612 ICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/451 (44%), Positives = 297/451 (65%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +++FD +   +V     MI+  A+CG +  A+ +FD+MP+RDP++W AM+AGY+Q G S
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL LF  M+    +LN  S  S LS C  + AL+ G+  H  + +   +    +G AL
Sbjct: 391 FEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNAL 450

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + MY KCG++ +A D F  M  +++ +W ++I G + +G GE +L  F  MK+ G++P++
Sbjct: 451 LLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDD 510

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T V+VL  C   GLV++GR++F +M ++YG+ P  +HY C+VDL GRAG L++A +++ 
Sbjct: 511 ATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMK 570

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            MP +P A  WG LL A R++ NTE+ E A+ K+  +E +N G YVLLSN+YA S  W  
Sbjct: 571 NMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGD 630

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V  +R  M+ KGVKK+PG S IE+  + H F  GDE HP  +EI   L E+  R+K AGY
Sbjct: 631 VGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGY 690

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
           V+ T+ V++D+EEEEKE  +  HSE++A+A+G++ +  G PIR++KNLRVC DCH+  K 
Sbjct: 691 VSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKY 750

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ++++  R II+RD NRFHHFK+G CSC  YW
Sbjct: 751 MARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 144/343 (41%), Gaps = 71/343 (20%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G      +VF  +     V    MIS   + G+ +LARK+FDEMPERD ++WN M+
Sbjct: 74  YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133

Query: 62  AGYAQ---CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--------- 109
            GY +    GK+RE   LF +M   DV     S  ++LS     G +D  R         
Sbjct: 134 KGYVRNRNLGKARE---LFEIMPERDV----CSWNTMLSGYAQNGCVDDARSVFDRMPEK 186

Query: 110 ----WAHV---YIERNRLKMTVTLGTA-----------LVDMYSKCGNMNKAMDFFWGMK 151
               W  +   Y++ ++++    L  +           L+  + K   + +A  FF  M 
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
            R+V +W ++I G A +G  +++ +LF       V     T+ +++ G     +VEE RE
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQNRMVEEARE 302

Query: 212 HFDSM--RREYGIEPWLEHY------------------------GCLVDLYGRAGRLDEA 245
            FD M  R E      L  Y                          ++  Y + G++ EA
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
            ++ +KMP K    +W A++     Y  +     A R  V++E
Sbjct: 363 KNLFDKMP-KRDPVSWAAMIAG---YSQSGHSFEALRLFVQME 401



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 130/305 (42%), Gaps = 23/305 (7%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+      IS+  + G  + A ++F  MP    +++N M++GY + G+   A  LF  
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M   D+    VS   ++        L + R    +  ER+     V     ++  Y++ G
Sbjct: 121 MPERDL----VSWNVMIKGYVRNRNLGKARELFEIMPERD-----VCSWNTMLSGYAQNG 171

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A   F  M E+N  +W +++     N   E++  LF   +   +    V++  +L 
Sbjct: 172 CVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLG 227

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           G      + E R+ FDSM     +      +  ++  Y ++G++DEA  + ++ P++   
Sbjct: 228 GFVKKKKIVEARQFFDSMNVRDVVS-----WNTIITGYAQSGKIDEARQLFDESPVQ-DV 281

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W A+++    Y    M E A     ++  +N  ++  +   Y + +  +    +  +M
Sbjct: 282 FTWTAMVSG---YIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVM 338

Query: 319 KAKGV 323
             + V
Sbjct: 339 PCRNV 343


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/462 (45%), Positives = 301/462 (65%), Gaps = 2/462 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +G  +KVFD +   DV+  T+++ A ++  D+  A ++F   P +D +AW AM+
Sbjct: 203 YVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMV 262

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GYAQ     +AL  F  M +  + ++EVS+   +SAC  LGA+ +  W     ERN L 
Sbjct: 263 TGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLG 322

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-L 180
             V +G+ LVDMY+KCG +++A   F GM ++NVYT++S+I GLA +G     + LF+ +
Sbjct: 323 RNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDM 382

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           +++A V PN VTF+ VL  C   G+V+EGR +F  M+  YGI P  +HY C+VDL  R+G
Sbjct: 383 VRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSG 442

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            + EALD++  M ++PH G WGALL ACR++ NTE+ ++A+  L  LE +  G YVLLSN
Sbjct: 443 LVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLSN 502

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE-VDREVHEFFAGDETHPRYNEIEVMLG 359
             A +  WD V  +R++M+ +G+KK P  S  E  D  VH+FFAGD THP  +EI+  L 
Sbjct: 503 TLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHEIKKRLL 562

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  +L LAGYV   + V+Y++ EEEKE  L  HSEK+A++FGL++L+    IRIVKNLR
Sbjct: 563 ELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLESRSSIRIVKNLR 622

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH   +++SKV   EI+VRD  RFHHF++G+CSC G+W
Sbjct: 623 ICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 32/174 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVF+G+H+ +V   ++MI   A  G  +    +F++M  R        
Sbjct: 334 MYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRA------- 386

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNR 119
                                  DV+ N V+ + VL+AC+H G + +GR+    + +R  
Sbjct: 387 -----------------------DVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYG 423

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGE 172
           +  +      +VD+ ++ G + +A+D    M  E +   W +++G   ++G  E
Sbjct: 424 ILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTE 477


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/467 (46%), Positives = 309/467 (66%), Gaps = 7/467 (1%)

Query: 1   MYAELGCLGYCQKVFD--GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           +Y  LG L   ++VFD  G    D      M+S   KCGD++ AR++F  MPER  ++W+
Sbjct: 160 LYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWS 219

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+    + G+  EAL +F  M  +  + + V + SVL AC HLGAL++GRW H +++  
Sbjct: 220 AMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAE 279

Query: 119 RLKMT---VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
            L  +   V L TALVDMY KCG M++A   F G++ ++V  W ++IGGLAMNG G+++L
Sbjct: 280 GLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRAL 339

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           ELF  M   G  PNE TFV VL  C   G V+EG+E F SM  ++GIEP  EHYGCL DL
Sbjct: 340 ELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMC-DHGIEPRREHYGCLADL 398

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
            GRAG L+EA  V+  MPM+PHA  WGAL+++C M+ N  +GE   +KL+ELE  + G Y
Sbjct: 399 LGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRY 458

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
           V+L N+YA +  W+    +R++M+ +G KK  G S IE +  VHEF +GD  HP+  +I 
Sbjct: 459 VVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIY 518

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDI-EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
            +L ++ +RL+L GYV +T+ V+ D+ +EE+K +TL  HSE++A+AFG+++    +PIRI
Sbjct: 519 ALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRI 578

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VKNLRVC DCH   K++SK++ REII+RDR+RFH F+ G CSC  +W
Sbjct: 579 VKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/452 (44%), Positives = 302/452 (66%), Gaps = 3/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  +  G+ E DV  ++A+I   +K  D+D A  +FDEMP RD + WN+++ G+AQ   
Sbjct: 175 HCGIIKTGL-ESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSD 233

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL+LF  M+      ++ ++ SVL ACT L  L+ GR  HV++ +      + L  A
Sbjct: 234 GNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNA 291

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMY KCG++  A   F  M E++V +W++++ GLA NG   ++LELF  MK++G RPN
Sbjct: 292 LIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPN 351

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +T + VL  C   GLVE+G  +F SM++ +G++P  EHYGCL+DL GRAGRLDEA+ +I
Sbjct: 352 YITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLI 411

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           ++M  +P +  W  LL ACR+++N ++   A++K++ELE ++ G Y+LLSNIYA ++ W+
Sbjct: 412 HEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWE 471

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  VR+ M  +G++K PGCS IEVD+++H F  GD +HP+  EI   L ++  R+   G
Sbjct: 472 DVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVG 531

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +TN V+ D+E E+KED+L  HSEK+AI FGL++L     +RI KNLR+C DCH   K
Sbjct: 532 YVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAK 591

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ++S++ +R I++RD  R+HHF++G CSC  YW
Sbjct: 592 VVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 129/245 (52%), Gaps = 9/245 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           + +F   +EP +     +++   K   ++ A  +FDEMPER+ ++W  M++ Y+    + 
Sbjct: 79  EHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSN-KLND 137

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           +AL    LM    V+ N  +  SVL AC  L  L Q    H  I +  L+  V + +AL+
Sbjct: 138 KALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQ---LHCGIIKTGLESDVFVRSALI 194

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           D+YSK  +++ A+  F  M  R++  W S+IGG A N  G ++L LF  MK+AG   ++ 
Sbjct: 195 DVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQA 254

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T  SVLR C  + L+E GR+ H   ++     +  L     L+D+Y + G L++A    +
Sbjct: 255 TLTSVLRACTGLALLELGRQVHVHVLK----FDQDLILNNALIDMYCKCGSLEDANSAFS 310

Query: 251 KMPMK 255
           +M  K
Sbjct: 311 RMVEK 315



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 5/203 (2%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
           DP       A +        A+     M+ H V  + ++   ++  C+  GA+ +G+  H
Sbjct: 19  DPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVH 78

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
            +I     +  + +   L++MY K   + +A D F  M ERNV +WT++I   + N   +
Sbjct: 79  EHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLND 137

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           K+L+   LM + GVRPN  T+ SVLR C   GL    + H   ++   G+E  +     L
Sbjct: 138 KALKCLILMFREGVRPNMFTYSSVLRAC--DGLPNLRQLHCGIIKT--GLESDVFVRSAL 193

Query: 233 VDLYGRAGRLDEALDVINKMPMK 255
           +D+Y +   LD AL V ++MP +
Sbjct: 194 IDVYSKWSDLDNALGVFDEMPTR 216



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           +++     M++ GV  + +T+  +++ C   G V+EG+   + +  + G EP +     L
Sbjct: 38  RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCK-GYEPKMFVVNTL 96

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +++Y +   L+EA D+ ++MP + +  +W  +++A
Sbjct: 97  LNMYVKFNLLEEAEDLFDEMPER-NVVSWTTMISA 130


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/443 (45%), Positives = 292/443 (65%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D +  TA+ +   +  D++ AR +FD M E+   +WNAM++GYAQ G +  A+ LF L
Sbjct: 345 DADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQL 404

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ  +V+ N +++ S LSAC HLGAL  G+W H  I + +L++ V + TAL+DMY+KCG+
Sbjct: 405 MQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGS 464

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  M  +NV +W ++I G  ++G G ++L+L+  M  A + P   TF+SV+  
Sbjct: 465 IAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYA 524

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP-HA 258
           C   GLV+EG++ F  M  EY I P +EH  C+VDL GRAG+L+EAL++I++ P      
Sbjct: 525 CSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGP 584

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
           G WGALL AC ++KN+++ +LAS+KL EL+++N G YVLLSN+Y   K++     VRQ  
Sbjct: 585 GVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEA 644

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K + + K PGC++IE+    H F AGD  HP+   I   L  ++ ++  AGY   T   +
Sbjct: 645 KTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAAL 704

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           YD+EEEEKE  +  HSEK+AIAFGL+S + G  IRI+KNLRVC DCH+ TK ISKV  R 
Sbjct: 705 YDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRL 764

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD +RFHHF++G CSC  YW
Sbjct: 765 IVVRDASRFHHFRDGVCSCGDYW 787



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 127/240 (52%), Gaps = 2/240 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++S  +KCGD+D A+ +FD M   D +A+NA+++GY+  G    ++ LF  +     +
Sbjct: 251 TGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWR 310

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N  ++V+V+   +  G     R  H ++ + RL     + TAL  +Y +  +M  A   
Sbjct: 311 PNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSI 370

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M E+ + +W ++I G A NG  E ++ LF LM++  V+PN +T  S L  C  +G +
Sbjct: 371 FDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGAL 430

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G+     + +E  +E  +     L+D+Y + G + EA  + ++M  K +  +W A+++
Sbjct: 431 SLGKWVHRIISKE-KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK-NVVSWNAMIS 488



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 121/280 (43%), Gaps = 27/280 (9%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLM 80
           D    +A+     K    D ARK+FD +P  D I WN +LAG        EAL  F  ++
Sbjct: 148 DTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL----PGSEALEAFVRMV 203

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
               V+ +  ++ S L A      +  GR  H Y  +  L     + T L+ +YSKCG+M
Sbjct: 204 DAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDM 263

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV---- 196
           + A   F  M   ++  + ++I G ++NG  E S+ELF  +  +G RPN  T V+V    
Sbjct: 264 DSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVY 323

Query: 197 ------LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
                 L   C+   V + R   D++               L  LY R   ++ A  + +
Sbjct: 324 SPFGHELLARCLHAFVVKARLDADALVST-----------ALTTLYCRLNDMESARSIFD 372

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
            M ++    +W A+++       TEM     + + EL  +
Sbjct: 373 AM-LEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQ 411


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 291/436 (66%), Gaps = 2/436 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG V+ A  +F+ +  +D ++WN ++ GY      +EAL LF  M       
Sbjct: 238 ALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 297

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALVDMYSKCGNMNKAMD 145
           N+V++VS+L AC HLGA+D GRW HVYI++    +T   +L T+L+DMY+KCG++  A  
Sbjct: 298 NDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQ 357

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  +++ +W ++I G AM+G      +LFS M++ G+ P+++TFV +L  C   G 
Sbjct: 358 VFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGK 417

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++ GR  F SM ++Y I P LEHYGC++DL G +G   EA ++I  MPM+P    W +LL
Sbjct: 418 LDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLL 477

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR + N E+ E  +R L+++E +N G+YVLLSNIYA +  WD V  VR ++  KG+KK
Sbjct: 478 KACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKK 537

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PGCS IE+D EVHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE 
Sbjct: 538 VPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEW 597

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK++SK++ REII RDR 
Sbjct: 598 KEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRT 657

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHF++G CSC  +W
Sbjct: 658 RFHHFRDGVCSCNDFW 673



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 162/286 (56%), Gaps = 7/286 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L    KVFD     DVV  TA+I+  A  G++  A++MFDE+P +D ++WNAM
Sbjct: 110 MYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAM 169

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  +EAL LF  M   +V+ +E +MV+VLSAC    +++ GR  H +I+ +  
Sbjct: 170 ISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGF 229

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+YSKCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 230 GSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQE 289

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPWLEHYGCLVDLYG 237
           M ++G  PN+VT VS+L  C  +G ++ GR    + D   ++    P L     L+D+Y 
Sbjct: 290 MLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYA 347

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASR 282
           + G ++ A  V N M  K    +W A++    M+     G +L SR
Sbjct: 348 KCGDIEAAHQVFNSMLHKS-LSSWNAMIFGFAMHGRANAGFDLFSR 392



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 33/255 (12%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F  + E + + WN ML GYA       AL L+ +M    +  N  +   +L +C  
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 102 LGALDQGRWAH-----------VYIERNRLKMTVTLG--------------------TAL 130
             A ++G+  H           +Y+  + + M    G                    TAL
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  Y+  GN+  A + F  +  ++V +W ++I G A  G+ +++LELF  M +  VRP+E
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T V+VL  C     VE GR+   S   ++G    L+    L+DLY + G+++ A  +  
Sbjct: 199 GTMVTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 251 KMPMKPHAGAWGALL 265
            +  K    +W  L+
Sbjct: 258 GLSCK-DVVSWNTLI 271



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 65/103 (63%), Gaps = 4/103 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +K+ D  + P +  +T++I   AKCGD++ A ++F+ M  +   +WNAM+ G+A  G++ 
Sbjct: 327 KKLKDVTNAPSL--RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRAN 384

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
               LF  M+ + ++ ++++ V +LSAC+H G LD GR  H++
Sbjct: 385 AGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR--HIF 425


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/493 (41%), Positives = 307/493 (62%), Gaps = 32/493 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKC------------------------ 36
           MYAE  CL + +KVFD + EP++V   A+++AC +C                        
Sbjct: 150 MYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIM 209

Query: 37  -------GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
                  G++ LAR++F +MP +D ++W+ M+ G+A  G   +A   F  ++   ++ NE
Sbjct: 210 LAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNE 269

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
           VS+  VLSAC   GA + GR  H ++E++     +++  AL+D YSKCGN++ A   F  
Sbjct: 270 VSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDN 329

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M  R+  +WT++I G+AM+G GE+++ LF+ M+++ ++P+ +TF+S+L  C   GLV+ G
Sbjct: 330 MLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLG 389

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
             +F  M   YGIEP +EHYGC+VDLYGRAG+L +A D + +MP+ P+   W  LL AC 
Sbjct: 390 CSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACS 449

Query: 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGC 329
           ++ N  +     R+L EL+ +N G +VLLSNIYA +  W  V  +R+ M  + +KK PG 
Sbjct: 450 IHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGW 509

Query: 330 SVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYDIEEEEKED 388
           S+IEV+R ++ F AG++ +    E    L EI  RL++  GYV     V++DIE EEKED
Sbjct: 510 SMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKED 569

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
           ++ +HSEK+A+AFG+  L  G  IR+VKNLR+C DCH V K+ISKV+  EI+VRDR+RFH
Sbjct: 570 SVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFH 629

Query: 449 HFKEGKCSCKGYW 461
            F  G CSC+ YW
Sbjct: 630 SFTHGSCSCRDYW 642



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 120/281 (42%), Gaps = 46/281 (16%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +IS  A+C  +  ARK+FDEM E + +AWNA++A   +C   ++A  +F  M I    
Sbjct: 145 TTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPI---- 200

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
                                         RN     + L       Y+K G +  A + 
Sbjct: 201 ------------------------------RNLTSWNIMLAG-----YTKAGELQLAREV 225

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  ++  +W+++I G A NG    +   F  +++ G+RPNEV+   VL  C   G  
Sbjct: 226 FMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAF 285

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E GR        + G    +     L+D Y + G LD A  V + M ++  A +W A++ 
Sbjct: 286 EFGRI-LHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNM-LRRSAVSWTAMIA 343

Query: 267 ACRMYKNTEMGELASRKLVELETKN--HGAYVLLSNIYAES 305
              M+     GE A R   E+E  N    +   +S +YA S
Sbjct: 344 GMAMHG---YGEEAIRLFNEMEESNIKPDSITFISILYACS 381



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 13/242 (5%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACT 100
           AR++F ++   D   +N ++ G +       AL LF  M+   V L +  S   +L A  
Sbjct: 58  ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA 117

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           +  AL  G   H       L   + +GT L+ MY++C  +  A   F  M E N+  W +
Sbjct: 118 NCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNA 177

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           ++         + + ++F  M    +R N  ++  +L G    G ++  RE F  M  + 
Sbjct: 178 IVAACFRCEGVKDAEQVFRCMP---IR-NLTSWNIMLAGYTKAGELQLAREVFMKMPLKD 233

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDV---INKMPMKPHAGAWGALLNACRMYKNTEMG 277
            +      +  ++  +   G  ++A      + +  M+P+  +   +L+AC      E G
Sbjct: 234 DVS-----WSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG 288

Query: 278 EL 279
            +
Sbjct: 289 RI 290



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR-PNEVTFVSVL 197
           +++ A   F  ++  +V+ + ++I GL+ +     +L+LF  M++  V  P+  +F  +L
Sbjct: 54  SLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLL 113

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           +       +  G +    +   YG++  L     L+ +Y     L  A  V ++M ++P+
Sbjct: 114 KAAANCRALTNGLQ-LHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM-IEPN 171

Query: 258 AGAWGALLNAC 268
             AW A++ AC
Sbjct: 172 IVAWNAIVAAC 182


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/441 (48%), Positives = 296/441 (67%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +VV    MI    + GD   AR +FD+M +R  ++WN M++GY+Q G  ++A+ +F  M+
Sbjct: 200 EVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMK 259

Query: 82  I-HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D++ N V++VSVL A + LG+L+ G W H+Y E + +++   LG+AL+DMYSKCG +
Sbjct: 260 KGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 319

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            KA+  F  +   NV TW+++I G A++G    +++ F  M+QAGVRP++V ++++L  C
Sbjct: 320 EKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 379

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLVEEGR +F  M    G+EP +EHYGC+VDL GR G LDEA + I  MP+KP    
Sbjct: 380 SHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVI 439

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W ALL ACRM++N EMG+  +  L+++   + GAYV LSN+YA   NW  V  +R  MK 
Sbjct: 440 WKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKE 499

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
             ++K PGCS I++D  +HEF   D++HPR  EI  ML EIS +L+LAGY   T  V+ +
Sbjct: 500 MDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLN 559

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EEE+KE+ L  HSEK+A AFGLIS   G PIRIVKNLR+C DCH   K+ISKV+ R+I 
Sbjct: 560 LEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKIT 619

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDR RFHHF++G CSC  YW
Sbjct: 620 VRDRKRFHHFQDGSCSCMDYW 640



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 134/299 (44%), Gaps = 55/299 (18%)

Query: 22  DVVCQTAMISACAKCG----DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE--ALH 75
           D +    ++  CA       D+D A K+F++MP+R+  +WN ++ G+++  + +   A+ 
Sbjct: 47  DTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAIT 106

Query: 76  LF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH---------------------- 112
           LF  +M    ++ N  +  SVL AC   G + QG+  H                      
Sbjct: 107 LFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMY 166

Query: 113 -----------------------VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
                                  + I+R +    V L   ++D Y + G+   A   F  
Sbjct: 167 VICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDK 226

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEE 208
           M++R+V +W ++I G + NG  + ++E+F  MK+   +RPN VT VSVL     +G +E 
Sbjct: 227 MRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLEL 286

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G E       + GI         L+D+Y + G +++A+ V  ++P + +   W A++N 
Sbjct: 287 G-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLP-RENVITWSAMING 343


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/434 (47%), Positives = 289/434 (66%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            +I   A CG +D A  MFDEMPE D  +W+ M++GY+Q G++ E L L   MQ  +V  
Sbjct: 107 GLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSS 166

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  ++ SV+  C  LG LD G+W H YI++  +K+ V LGTALV MYSKCG+++ A+  F
Sbjct: 167 DAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 226

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
            GM ER+V TW+ +I G A++G  EK+L+LF  MK++ + PN VTF SVL      GLVE
Sbjct: 227 QGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVE 286

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +G + F++M  EY I P ++HYGC+VDL+ RAG +  A   I  MP++P+   W  LL A
Sbjct: 287 KGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGA 346

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           C+ +    +GE  SRK+++L+  +   YV +SN+YA    W  V  VR +MK K  KK  
Sbjct: 347 CKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQH 406

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           G S IE++  VH+F  G+E+HP+  +I  ML +++R+LK  G+VA+T  V++DI+EEEKE
Sbjct: 407 GWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKE 466

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L  HSE++AIA+GL+    G PIRIVKNLR C DCH+V K+IS+V+NREII+RDR  F
Sbjct: 467 YALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCF 526

Query: 448 HHFKEGKCSCKGYW 461
           HHF+E  CSC  YW
Sbjct: 527 HHFRERGCSCNDYW 540



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 1/216 (0%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G V  A  +F      +   WN ++ GY+       A+ L+  M +  +  N  +   VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
           +AC  L  L +G+  H  I +  L     L   L+ +Y+ CG M+ A   F  M E +  
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W++++ G + NG   ++L+L   M+   V  +  T  SV+  C  +G+++ G+     +
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYI 194

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            +E G++  +     LV +Y + G LD AL V   M
Sbjct: 195 DKE-GVKIDVVLGTALVGMYSKCGSLDNALKVFQGM 229



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 8/153 (5%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  TA++   +KCG +D A K+F  M ERD   W+ M+AGYA  G   +AL LF  M+
Sbjct: 202 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMK 261

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT----ALVDMYSKC 137
              +  N V+  SVLSA +H G +++G   H   E    +  +T        +VD++ + 
Sbjct: 262 RSKIIPNCVTFTSVLSAYSHSGLVEKG---HQIFETMWTEYKITPQIKHYGCMVDLFCRA 318

Query: 138 GNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           G +  A  F   M  E NV  W +++G    +G
Sbjct: 319 GMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 351


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/435 (47%), Positives = 284/435 (65%), Gaps = 20/435 (4%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA+I    KCG V  AR +F+ + ++D   W+ +++ YA      +  +LF  M  +DVK
Sbjct: 331 TALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVK 390

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N V+MVS+LS C   GALD G+W H YI R+ L++ V L TAL++MY+KCG++  A   
Sbjct: 391 PNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSL 450

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F    +R++  W +++ G +M+G G+++LELFS M+  GV PN++TFVS+   C   GL 
Sbjct: 451 FNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL- 509

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
                              +EHYGCLVDL GRAG LDEA ++I  MPM+P+   WGALL 
Sbjct: 510 -------------------MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLA 550

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           AC+++KN  +GE+A+RK++EL+ +N G  VL SNIYA +K W+ V +VR+ M   G+KK 
Sbjct: 551 ACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKE 610

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PG S IEV   VH F +GD+   +  ++  M+ E+  +L+ +GY  NT  V+ +I+EEEK
Sbjct: 611 PGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEK 670

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSEK+A AFGLIS   G PIRIVKNLR+C DCH  TK++SK++ R IIVRDRNR
Sbjct: 671 ESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNR 730

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF EG CSC GYW
Sbjct: 731 FHHFSEGYCSCMGYW 745



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 142/262 (54%), Gaps = 9/262 (3%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G+ QK  +G      VC  A+++   KCG +  AR +FD+MPERD ++W  ML  Y +  
Sbjct: 112 GFAQK--NGFASDVFVCN-ALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSK 168

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN--RLKMTVTL 126
              EAL L   MQ   VKL+ V+++S+++   +L  +  GR  H YI RN    KM V++
Sbjct: 169 AFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSM 228

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            TAL+DMY K G +  A   F  + +R+V +WT +I G   +   ++  + F+ M +  +
Sbjct: 229 TTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKL 288

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            PNE+T +S++  C  VG ++ G+  H   +R  +G+   L     L+D+YG+ G++  A
Sbjct: 289 FPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMS--LALVTALIDMYGKCGQVGYA 346

Query: 246 LDVINKMPMKPHAGAWGALLNA 267
             + N +  K     W  L++A
Sbjct: 347 RALFNGVK-KKDVKIWSVLISA 367



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 2/255 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  + +V   TA+I    K G +  A+++FD + +R  ++W  M+AG  +  +  E    
Sbjct: 220 GDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKN 279

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F+ M    +  NE++++S+++ C  +G LD G+W H Y+ RN   M++ L TAL+DMY K
Sbjct: 280 FNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGK 339

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A   F G+K+++V  W+ +I   A     ++   LF  M    V+PN VT VS+
Sbjct: 340 CGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSL 399

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G ++ G+     + R +G+E  +     L+++Y + G +  A  + N+  M+ 
Sbjct: 400 LSLCAEAGALDLGKWTHAYINR-HGLEVDVILETALINMYAKCGDVTIARSLFNE-AMQR 457

Query: 257 HAGAWGALLNACRMY 271
               W  ++    M+
Sbjct: 458 DIRMWNTMMAGFSMH 472



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 51/229 (22%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV+ +TA+I+  AKCGDV +AR +F+E  +RD   WN M+AG++  G  +EAL LF  
Sbjct: 425 EVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSE 484

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+ H V+ N+++ VS+  AC+H G ++                       LVD+  + G+
Sbjct: 485 MESHGVEPNDITFVSIFHACSHSGLMEH-------------------YGCLVDLLGRAGH 525

Query: 140 MNKAMDFFWGMKER-NVYTWTSVIGGLAMNG-------AGEKSLEL------FSLMKQ-- 183
           +++A +    M  R N   W +++    ++        A  K LEL      +S++K   
Sbjct: 526 LDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNI 585

Query: 184 --AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
             +  R N+VT             V E   H   M++E G+  W+E  G
Sbjct: 586 YASAKRWNDVTS------------VREAMSH-SGMKKEPGLS-WIEVSG 620



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQG 108
           PE +   +N +++ Y      + + + +  M+ +D   L+   + S+L AC    + D G
Sbjct: 51  PEAN---YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLG 107

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           R  H + ++N     V +  AL++MY KCG +  A   F  M ER+V +WT+++G    +
Sbjct: 108 RELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRS 167

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LE 227
            A  ++L L   M+  GV+ + V  +S++     +  ++ GR     + R  G E   + 
Sbjct: 168 KAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVS 227

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
               L+D+Y + G L  A  + +++  K    +W  ++  C
Sbjct: 228 MTTALIDMYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGC 267


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/435 (45%), Positives = 295/435 (67%), Gaps = 1/435 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DVV   A+++  AK G ++ A  +FD++P +D I+WN ++ GY Q G + EA+  +++
Sbjct: 356 DKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNM 415

Query: 80  MQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   D   N+ + VS++ A +H+GAL QG   H  + +N L + V + T L+D+Y KCG
Sbjct: 416 MEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCG 475

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  AM  F+ +       W ++I  L ++G GE++L+LF  M    V+ + +TFVS+L 
Sbjct: 476 RLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLS 535

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG++ FD M++EYGI+P L+HYGC+VDL GRAG L++A +++  MP++P A
Sbjct: 536 ACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDA 595

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL+AC++Y N E+G LAS +L+E++++N G YVLLSNIYA ++ W+ VI VR + 
Sbjct: 596 SIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLA 655

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G++K PG S + V  +   F+ G++THP+Y EI   L  +S ++K  GYV + + V 
Sbjct: 656 RDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVY 715

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            DIEE+EKE  L  HSE++AIAFG+IS     PIRI KNLRVC DCH+ TK IS++  RE
Sbjct: 716 QDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISERE 775

Query: 439 IIVRDRNRFHHFKEG 453
           I+VRD NRFHHFK+G
Sbjct: 776 IVVRDSNRFHHFKDG 790



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 152/283 (53%), Gaps = 7/283 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV    A+I+  +K G +  A+ +FD+M  RD ++WN+++A Y Q      AL  F  
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCG 138
           MQ+  ++ + +++VS+ S  + L      R    + I R  L   V +G ALV+MY+K G
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVL 197
            MN A   F  +  ++  +W +++ G   NG   ++++ +++M++     PN+ T+VS++
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSII 433

Query: 198 RGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                VG +++G + H   ++    ++ ++    CL+DLYG+ GRL++A+ +  ++P + 
Sbjct: 434 PAYSHVGALQQGMKIHAKLIKNSLYLDVFVA--TCLIDLYGKCGRLEDAMSLFYEIP-RD 490

Query: 257 HAGAWGALLNACRMY-KNTEMGELASRKLVELETKNHGAYVLL 298
            +  W A++ +  ++ +  E  +L    L E    +H  +V L
Sbjct: 491 TSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSL 533



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 11/258 (4%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    E DV    +++   ++ G +D+A K+F +MP +D  +WNAM++G+ Q G +  A
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L + + M+   VK++ +++ S+L  C     +  G   H+++ ++ L   V +  AL++M
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINM 266

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           YSK G +  A   F  M+ R++ +W S+I     N     +L  F  M+  G+RP+ +T 
Sbjct: 267 YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV 326

Query: 194 VSVLRGCCVVGLVEEGREHFD-SMRREYGIEPWLEHY----GCLVDLYGRAGRLDEALDV 248
           VS+      +      R      +RRE     WL+        LV++Y + G ++ A  V
Sbjct: 327 VSLTSIFSQLSDQRISRSILGFVIRRE-----WLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 249 INKMPMKPHAGAWGALLN 266
            +++P K    +W  L+ 
Sbjct: 382 FDQLPRK-DTISWNTLVT 398



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 134/271 (49%), Gaps = 21/271 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH----LF 77
           ++V  T +I+     GD+ L+R  FD + +++  +WN++++ Y + GK  EA++    LF
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLF 112

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +     ++ +  +   +L AC    +L  G+  H  + +   +  V +  +LV +YS+ 
Sbjct: 113 SMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRY 169

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G ++ A   F  M  ++V +W ++I G   NG    +L + + MK  GV+ + +T  S+L
Sbjct: 170 GVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASIL 229

Query: 198 RGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C     V  G   H   ++  +G++  +     L+++Y + GRL +A  V ++M ++ 
Sbjct: 230 PVCAQSDDVINGVLIHLHVLK--HGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRD 287

Query: 257 HAGAWGALL----------NACRMYKNTEMG 277
              +W +++           A R +K  ++G
Sbjct: 288 LV-SWNSIIAAYEQNNDPSTALRFFKGMQLG 317


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/438 (46%), Positives = 291/438 (66%), Gaps = 4/438 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+I    KCG+V+ A  +F+ +  +D I+WN ++ GY      +EAL LF  M      
Sbjct: 274 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG---TALVDMYSKCGNMNKA 143
            N+V+M+S+L AC HLGA++ GRW HVYI + RLK         T+L+DMY+KCG++  A
Sbjct: 334 PNDVTMLSILPACAHLGAIEIGRWIHVYINK-RLKGVANASSHRTSLIDMYAKCGDIEAA 392

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  +  R++ +W ++I G AM+G    + ++FS M++  + P+++TFV +L  C   
Sbjct: 393 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G+++ GR  F SM+ +Y I P LEHYGC++DL G +G   EA ++IN M M+P    W +
Sbjct: 453 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 512

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL AC+MY N E+GE  ++ L+++E KN G+YVLLSNIYA +  W+ V  +R ++  KG+
Sbjct: 513 LLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 572

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           KK+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EE
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           E KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 444 RNRFHHFKEGKCSCKGYW 461
           R RFHHF++G CSC  YW
Sbjct: 693 RTRFHHFRDGVCSCNDYW 710



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 156/272 (57%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   +KVFD     DVV  TA+I+  A  G +  A+KMFDE+P +D ++WNAM
Sbjct: 147 MYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAM 206

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G ++EAL LF  M   +V+ +E +MVSV+SAC    +++ GR  H +I+ +  
Sbjct: 207 ISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGF 266

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+Y KCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 267 GSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQE 326

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +S+L  C  +G +E GR  H    +R  G+     H   L+D+Y + 
Sbjct: 327 MLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKC 386

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V + + +     +W A++    M+
Sbjct: 387 GDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMH 417



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 37/290 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q +  G+H  +    + +I  C      D    A  +F+ + E + + WN M  G+A 
Sbjct: 22  HAQMIKTGLHNTNYAL-SKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYI 115
                 AL+L+  M    +  N  +   +L +C    A  +G+  H           +Y+
Sbjct: 81  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 140

Query: 116 ERNRLKMTVTLG--------------------TALVDMYSKCGNMNKAMDFFWGMKERNV 155
             + + M V  G                    TAL+  Y+  G +  A   F  +  ++V
Sbjct: 141 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 200

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W ++I G A  G  +++LELF  M +  VRP+E T VSV+  C     +E GR+   S
Sbjct: 201 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ-VHS 259

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              ++G    L+    L+DLY + G ++ A  +   +  K    +W  L+
Sbjct: 260 WIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD-VISWNTLI 308



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 50/243 (20%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +T++I   AKCGD++ A+++FD +  R   +WNAM+ G+A  G++  A  +F  M+ +++
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 435

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + ++++ V +LSAC+H G LD GR  H+                                
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGR--HI-------------------------------- 461

Query: 146 FFWGMKERNVYT-----WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            F  MKE    T     +  +I  L  +G  +++ E+ + M+   + P+ V + S+L+ C
Sbjct: 462 -FRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKAC 517

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALDV---INKMPMKP 256
            +   VE G  +  ++ +   IEP     Y  L ++Y  AGR +E   +   +N   MK 
Sbjct: 518 KMYANVELGESYAQNLIK---IEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKK 574

Query: 257 HAG 259
             G
Sbjct: 575 VPG 577


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 313/463 (67%), Gaps = 7/463 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           MYA+ G +G  +++FD +    + V   AMISA  + G++D AR++F+ MP R+ + WN+
Sbjct: 304 MYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNS 363

Query: 60  MLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           M+AGYAQ G+S  A+ LF  ++    +  +EV+MVSV+SAC HLGAL+ G W   ++  N
Sbjct: 364 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 423

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
           ++K++++   A++ MYS+CG+M  A   F  M  R+V ++ ++I G A +G G +++ L 
Sbjct: 424 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLM 483

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
           S MK+ G+ P+ VTF+ VL  C   GL+EEGR+ F+S++     +P ++HY C+VDL GR
Sbjct: 484 STMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGR 538

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
            G L++A   + +MPM+PHAG +G+LLNA R++K  E+GELA+ KL ELE  N G ++LL
Sbjct: 539 VGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILL 598

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA +  W  V  +R+ MK  GVKK  G S +E   ++H+F   D +H R ++I  +L
Sbjct: 599 SNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLL 658

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+ ++++ AGY+A+ + V+ D+EEEEKE+ +  HSEK+AI + L+  + G  IR+VKNL
Sbjct: 659 IELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNL 718

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVCWDCH   KMISK+  R IIVRD NRFH F +G CSCK YW
Sbjct: 719 RVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 34/280 (12%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G  Q +FD + E +V+  TAM++  AK  D++ AR+ FD MPER  ++WNAML+GYAQ G
Sbjct: 180 GQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNG 239

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            + E L LF  M    ++ +E + V+V+SAC+  G           + + ++++   + T
Sbjct: 240 LAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRT 299

Query: 129 ALVDMYSKC--------------------------------GNMNKAMDFFWGMKERNVY 156
           AL+DMY+KC                                GN++ A + F  M  RNV 
Sbjct: 300 ALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVV 359

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
           TW S+I G A NG    ++ELF  M  A  + P+EVT VSV+  C  +G +E G      
Sbjct: 360 TWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRF 419

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +  E  I+  +  +  ++ +Y R G +++A  V  +M  +
Sbjct: 420 L-TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 458


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/437 (47%), Positives = 291/437 (66%), Gaps = 4/437 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+V+ A  +F  +  +D I+WN M+ GY      +EAL LF  M       
Sbjct: 275 ALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENP 334

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+S+L AC  LGA+D GRW HVYI++ R+K      +L T+L+DMY+KCG++  A 
Sbjct: 335 NDVTMLSILPACAQLGAIDFGRWIHVYIDK-RIKGVTNASSLRTSLIDMYAKCGDIEAAH 393

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  R +    ++I G AM+G    + ++FS M++ G+ P+++TFV +L  C   G
Sbjct: 394 QVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSG 453

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F SM + Y I P LEHYGC++DL G  G   EA ++IN M M+P    W +L
Sbjct: 454 MLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSL 513

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+GE  ++KL+++E +N G+YVLLSNIYA +  W+ V N+R ++  KG+K
Sbjct: 514 LKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMK 573

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 574 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            K+  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 634 FKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 693

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHF++G CSC  YW
Sbjct: 694 TRFHHFRDGVCSCNDYW 710



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 148/253 (58%), Gaps = 1/253 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G      KVFDG    DVV  TA+I+  A  G ++ A+KMFDE+P +D ++WNA+
Sbjct: 147 MYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAI 206

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA  G ++EAL LF  M   +VK +E +MV+V+SAC   G++  GR  H +I+ + L
Sbjct: 207 ISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGL 266

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+YSKCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 267 GSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQE 326

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +S+L  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 327 MLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKC 386

Query: 240 GRLDEALDVINKM 252
           G ++ A  V N M
Sbjct: 387 GDIEAAHQVFNSM 399



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 120/280 (42%), Gaps = 36/280 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q +  G+H  +    + ++  C    + D    A  +F+ + E + + WN M  G+A 
Sbjct: 22  HAQMIKTGLHNTNYAL-SRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
                 A+ L+  M    +  N  +   +L +C  L    +G+  H ++ +   ++ + +
Sbjct: 81  SSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYV 140

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNV--YT--------------------------- 157
            T+L+ MY K G    A   F G   R+V  YT                           
Sbjct: 141 HTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDV 200

Query: 158 --WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
             W ++I G A  G  +++L+LF  M +  V+P+E T V+V+  C   G ++ GR+   S
Sbjct: 201 VSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQ-VHS 259

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
              ++G+   L+    L+DLY + G ++ A  +   +  K
Sbjct: 260 WIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK 299



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 41/254 (16%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     + +T++I   AKCGD++ A ++F+ M  R   A NAM+ G+A  G+
Sbjct: 361 YIDKRIKGVTNASSL-RTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGR 419

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           +  A  +F  M+ + ++ ++++ V +LSAC+H G LD GR         R+  ++T    
Sbjct: 420 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR---------RIFRSMTQNYK 470

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           +       G M                    ++G L +    E+ +   ++       P+
Sbjct: 471 ITPKLEHYGCM------------------IDLLGHLGLFKEAEEMINTMTM------EPD 506

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALDV 248
            V + S+L+ C + G VE G      + +   IEP     Y  L ++Y  AGR +E  ++
Sbjct: 507 GVIWCSLLKACKMHGNVELGESFAQKLIK---IEPENPGSYVLLSNIYATAGRWNEVANI 563

Query: 249 ---INKMPMKPHAG 259
              +N   MK   G
Sbjct: 564 RALLNDKGMKKVPG 577


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/465 (44%), Positives = 308/465 (66%), Gaps = 4/465 (0%)

Query: 1    MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            MYA+ G + Y  KV+D   + DV+    M+SA    G  + A+ +FD+M +R+   WN++
Sbjct: 624  MYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSI 683

Query: 61   LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-VYIERNR 119
            LAGYA  G  +E+ + F  M   D++ + ++MV++++ C+ L AL+ G   H + I++  
Sbjct: 684  LAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGF 743

Query: 120  LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  +V L TALVDMYSKCG + KA   F  M  +N+ +W ++I G + +G  +++L L+ 
Sbjct: 744  VNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYE 803

Query: 180  LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
             M + G+ PNEVTF+++L  C   GLVEEG   F SM+ +Y IE   EHY C+VDL GRA
Sbjct: 804  EMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRA 863

Query: 240  GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
            GRL++A + + KMP++P    WGALL ACR++K+ +MG LA+++L EL+ +N G YV++S
Sbjct: 864  GRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMS 923

Query: 300  NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            NIYA +  W  V ++RQ+MK KGVKK PG S IE++ E+  F AG +THP+  EI   L 
Sbjct: 924  NIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLR 983

Query: 360  EISRRLKLAGYVANTNPVMY---DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
             ++ + K  GY+ +T+ ++    DI+EEE+E+ L +HSE++A++ GLISL +   IR+ K
Sbjct: 984  HLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFK 1043

Query: 417  NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            NLR+C DCH  TK ISK+  R II RD NRFHHF+ GKCSC  YW
Sbjct: 1044 NLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 135/231 (58%), Gaps = 2/231 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  +A++   +KCG V+ A ++F  + ER+ +++NA+LAGY Q GK+ EAL L+H MQ
Sbjct: 411 DIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQ 470

Query: 82  IHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
             D ++ ++ +  ++L+ C +    +QGR  H ++ R  +   + + T LV MYS+CG +
Sbjct: 471 SEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRL 530

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           N A + F  M ERN Y+W S+I G   NG  +++L LF  M+  G++P+  +  S+L  C
Sbjct: 531 NYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
             +   ++GRE  + + R    E  +     LVD+Y + G +D A  V ++
Sbjct: 591 VSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKCGSMDYAWKVYDQ 640



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 139/256 (54%), Gaps = 5/256 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A+I   AKC D +   K+FDEM ER+ + WN++++  AQ G   +AL LF  MQ
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K N  ++ S+L A   L  + +GR  H ++ RN L   + LG+ALVDMYSKCG + 
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGC 200
           +A   F  + ERN  ++ +++ G    G  E++LEL+  M+ + G++P++ TF ++L  C
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                  +GR+ H   +R        +E    LV +Y   GRL+ A ++ N+M  + +A 
Sbjct: 490 ANQRNDNQGRQIHAHLIRANITKNIIVETE--LVHMYSECGRLNYAKEIFNRMAER-NAY 546

Query: 260 AWGALLNACRMYKNTE 275
           +W +++   +    T+
Sbjct: 547 SWNSMIEGYQQNGETQ 562



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 32/277 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +++ +T ++   ++CG ++ A+++F+ M ER+  +WN+M+ GY Q G+++EAL LF  MQ
Sbjct: 513 NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ 572

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM- 140
           ++ +K +  S+ S+LS+C  L    +GR  H +I RN ++    L   LVDMY+KCG+M 
Sbjct: 573 LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD 632

Query: 141 ------------------------------NKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
                                         N A + F  M++RN   W S++ G A  G 
Sbjct: 633 YAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGL 692

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
            ++S   F  M ++ +  + +T V+++  C  +  +E G +    + ++  +   +    
Sbjct: 693 KKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLET 752

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            LVD+Y + G + +A  V + M  K +  +W A+++ 
Sbjct: 753 ALVDMYSKCGAITKARTVFDNMNGK-NIVSWNAMISG 788



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q + +G + PD    T ++   A+ G +D    ARK+F+EMPER+  AWN M+  YA+
Sbjct: 94  HTQMISNG-YNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYAR 152

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
                E L L+  M+      ++ +  SV+ AC  +  +   R     + +  L   + +
Sbjct: 153 VDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFV 212

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
           G ALVD Y++ G M+ A+     ++  +V TW +VI G     + E++  +F  M + GV
Sbjct: 213 GGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGV 272

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            P+  TF S LR C  +   + G++ H   +   +  + ++ +   L+D+Y +    +  
Sbjct: 273 CPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGN--ALIDMYAKCDDEESC 330

Query: 246 LDVINKMPMKPHAGAWGALLNA 267
           L V ++M  +     W ++++A
Sbjct: 331 LKVFDEMGERNQV-TWNSIISA 351



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 2/238 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++   A+ G +D A    DE+     + WNA++AGY +     EA  +F  M    V  
Sbjct: 215 ALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCP 274

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S L  C  L + D G+  H  +     K    +G AL+DMY+KC +    +  F
Sbjct: 275 DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF 334

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M ERN  TW S+I   A  G    +L LF  M+++G + N     S+L     +  + 
Sbjct: 335 DEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIG 394

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +GRE    + R   +   +     LVD+Y + G ++EA  V   + ++ +  ++ ALL
Sbjct: 395 KGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALL 450


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/440 (46%), Positives = 288/440 (65%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T+++   AKCG ++ AR++FD M E+D + W+A++ GYA  G  +EAL +F  MQ
Sbjct: 237 NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQ 296

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +V+ +  +MV V SAC+ LGAL+ G WA   ++ +       LGTAL+D Y+KCG++ 
Sbjct: 297 RENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVA 356

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F GM+ ++   + +VI GLAM G    +  +F  M + G++P+  TFV +L GC 
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCT 416

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV++G  +F  M   + + P +EHYGC+VDL  RAG L EA D+I  MPM+ ++  W
Sbjct: 417 HAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVW 476

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL  CR++K+T++ E   ++L+ELE  N G YVLLSNIY+ S  WD    +R  +  K
Sbjct: 477 GALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQK 536

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++KLPGCS +EVD  VHEF  GD +HP  ++I   L  + + L+ AGY   T  V++D+
Sbjct: 537 GMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDV 596

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  L  HSEK+A+AF LIS      IR+VKNLRVC DCH+  K++SKV  REIIV
Sbjct: 597 EEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIV 656

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF EG CSC+ YW
Sbjct: 657 RDNNRFHHFTEGSCSCRDYW 676



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 131/235 (55%), Gaps = 3/235 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV  +T ++   +K G +  ARK+FDE+PE++ ++W A++ GY + G   EAL LF  + 
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  ++V +L AC+ +G L  GRW   Y+  +     V + T+LVDMY+KCG+M 
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F GM E++V  W+++I G A NG  +++L++F  M++  VRP+    V V   C 
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACS 315

Query: 202 VVGLVEEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +G +E G      M   E+   P L     L+D Y + G + +A +V   M  K
Sbjct: 316 RLGALELGNWARGLMDGDEFLSNPVLG--TALIDFYAKCGSVAQAKEVFKGMRRK 368



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 123/276 (44%), Gaps = 7/276 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+H+ D      ++ +         A  +F + P  +   +N ++ G       R+A+ +
Sbjct: 30  GLHQ-DTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSV 88

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           +  M+ H    +  +   VL ACT L      G   H  + +      V + T LV +YS
Sbjct: 89  YASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYS 148

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           K G +  A   F  + E+NV +WT++I G   +G   ++L LF  + + G+RP+  T V 
Sbjct: 149 KNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVR 208

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C  VG +  GR   D   RE G    +     LVD+Y + G ++EA  V + M  K
Sbjct: 209 ILYACSRVGDLASGR-WIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEK 267

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
                W AL+     Y +  M + A     E++ +N
Sbjct: 268 DVV-CWSALIQG---YASNGMPKEALDVFFEMQREN 299


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/449 (45%), Positives = 301/449 (67%), Gaps = 1/449 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++FD +    VV   ++++   + G+VD A + F+ MPE++ ++WN +++   Q     E
Sbjct: 392 RIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEE 451

Query: 73  ALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           A+ +FH MQ  + V ++ V+M+S+ SAC HLGALD  +W + YIE+NR+++ V LGT LV
Sbjct: 452 AIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLV 511

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DM+S+CG+   AM  F  +  R+V  WT+ IG +AM G  E+++ELF+ M + G++P+ V
Sbjct: 512 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGV 571

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            F+  L  CC  GLV++G+E F+SM + +G+ P   HYGC+VDL GRAG L+EAL +I  
Sbjct: 572 VFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKD 631

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP +P+   W +LL ACR+  N EM   A+ K+  L  +  G+YVLLSN+YA +  W+ +
Sbjct: 632 MPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 691

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR  MK KG++K PG SVI++  + HEF +GDE+HP   +IE ML E+S+R    G+V
Sbjct: 692 AKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHV 751

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            + + V+ D++E+EK   L +HSEK+A+AFGLIS  +G  IRIVKNLRVC  CH   K  
Sbjct: 752 PDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFA 811

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           SKV+NREII+RD NRFH  ++GKCSC  +
Sbjct: 812 SKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 130/238 (54%), Gaps = 2/238 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF- 77
           +  D+  Q +++   A+CG++D ARK+FDEM ER+ ++W +M+ GYA+   +++A+ LF 
Sbjct: 164 YAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFF 223

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +++  DV  N V+MV V+SAC  L  L+ G   + +I  + +++   + +ALVDMY KC
Sbjct: 224 RMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKC 283

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
             ++ A   F      N+    ++       G  +++L + +LM  +G+RP+ ++ +S +
Sbjct: 284 NAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAI 343

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             C  +  +  G+     + R  G E W      L+D+Y +  R D A  + ++M  K
Sbjct: 344 SSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 400



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 44/334 (13%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACA----KCGDVDLARKMFDEMPERDPIAWN 58
           A+L  L   +KV+D I +  +     MISA      KC  +D+A+++FDE    +    N
Sbjct: 246 AKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCN 305

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM + Y + G ++EAL + +LM    ++ + +SM+S +S+C+ L  +  G+  H Y+ RN
Sbjct: 306 AMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 365

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             +    +  AL+DMY KC   + A   F  M  + V TW S++ G   NG  + + E F
Sbjct: 366 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETF 425

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE------------------- 219
           + M +  +    V++ +++       + EE  E F  M+ +                   
Sbjct: 426 NTMPEKNI----VSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGH 481

Query: 220 ---YGIEPWLEHY-------------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
                +  W+ +Y               LVD++ R G  + A+ + N +  +    AW A
Sbjct: 482 LGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR-DVSAWTA 540

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
            + A  M  N E       +++E   K  G   +
Sbjct: 541 AIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFI 574



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 2/190 (1%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           +N+++ GYA  G  +EA+ LF  M    +  ++ +    LS C        G   H  I 
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           +      + +  +LV  Y++CG ++ A   F  M ERNV +WTS+I G A     + +++
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220

Query: 177 L-FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           L F +++   V PN VT V V+  C  +  +E G + +D + R+ GIE        LVD+
Sbjct: 221 LFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFI-RDSGIEVNDLMISALVDM 279

Query: 236 YGRAGRLDEA 245
           Y +   +D A
Sbjct: 280 YMKCNAIDIA 289


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/456 (44%), Positives = 300/456 (65%), Gaps = 1/456 (0%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G L +C  +  G+     VC T ++   A+C  V+ A ++F +M +RD   W  M+   A
Sbjct: 170 GRLIHCITLKCGLDYGHFVCAT-LVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALA 228

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G   E+L  F  M+   +  ++V++V+V+ AC  LGA+++ +  H YI      + V 
Sbjct: 229 ESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVI 288

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LGTA++DMY+KCG++  A   F  M+ RNV TW+++I     +G GEK+LELF +M ++G
Sbjct: 289 LGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSG 348

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           + PN +TFVS+L  C   GL+EEG+  F SM  EYG+ P ++HY C+VDL GRAGRLDEA
Sbjct: 349 ILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEA 408

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
           L++I  MP++     WGALL ACR++++ ++ E  +R L++L+++  G YVLLSNIYA +
Sbjct: 409 LEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANA 468

Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
             W+ +   R +M   G++K+PG + IEV  ++++F  GD+THPR NEI  ML  +  +L
Sbjct: 469 GKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKL 528

Query: 366 KLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
           ++AGY  +TN V+YD++EE K+  L  HSEK+AIAFGL+ L +G PIRI KNLRVC DCH
Sbjct: 529 EVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCH 588

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              K +S +  + IIVRD  RFHHFKEG CSC+ YW
Sbjct: 589 TFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 4/232 (1%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G ++ A+++FD M +R P +W+ ++ GYA+ G       +F  +      L++ S   V+
Sbjct: 99  GALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVI 158

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            AC  L  L  GR  H    +  L     +   LVDMY++C  +  A   F  M +R++ 
Sbjct: 159 RACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLA 218

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDS 215
           TWT +IG LA +G   +SL  F  M+  G+ P++V  V+V+  C  +G + + +  H   
Sbjct: 219 TWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYI 278

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
               Y ++  L     ++D+Y + G ++ A  + ++M ++ +   W A++ A
Sbjct: 279 NGTGYSLDVILG--TAMIDMYAKCGSVESARWIFDRMQVR-NVITWSAMIAA 327



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 23/206 (11%)

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
           C +  E  H+ H    +D K    S++S  +       L Q R  H  I  N     + +
Sbjct: 39  CSQESECSHVLH----YDTKRFRSSLLSCRN-------LFQVRQVHAQIATNGAFRNLAV 87

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
              L+ MY + G +  A + F GM +R+ Y+W+ ++GG A  G       +F  + ++G 
Sbjct: 88  ANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGA 147

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMR--REYGIEPWLEHYGC--LVDLYGRAGR 241
             ++ +   V+R C  +  ++ GR  H  +++   +YG      H+ C  LVD+Y R   
Sbjct: 148 PLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG------HFVCATLVDMYARCKV 201

Query: 242 LDEALDVINKMPMKPHAGAWGALLNA 267
           +++A  +  KM  K     W  ++ A
Sbjct: 202 VEDAHQIFVKM-WKRDLATWTVMIGA 226


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/440 (46%), Positives = 295/440 (67%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T M+    + G VD ARK+FD MPER+ I+WNAM++GY + G+  +AL +F  M+
Sbjct: 160 DVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMR 219

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ N     S + ACT  G L +GR  H ++E++ + M   L TA+VDMY KCG++ 
Sbjct: 220 ALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVE 279

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  +  + + +W  +IGGLA++G  + ++ELF  M++  V P++VT V+VL  C 
Sbjct: 280 EAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACA 339

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G+V +G  +F+ + + YGIEP +EHYGC+VDL+GRAG LDEA  VI+ MPM+P  G  
Sbjct: 340 HTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVL 399

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GAL  AC+++++ ++GE    +++EL+ +N G YVLL+N+ A +  W  V  VR++M  +
Sbjct: 400 GALFGACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDER 459

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            V K  G SVIE+D EV EF  G   H +  EI   + ++ R+++L GY+ +T+ V++DI
Sbjct: 460 NVSKEAGRSVIEIDGEVCEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDI 519

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EEEKE  L  HSEK+AIAFGL+  + G  +RI KNLRVC DCH+ TK IS+VF REI+V
Sbjct: 520 TEEEKEVPLQYHSEKLAIAFGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVFEREIVV 579

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDRNRFHHFK+G CSC+ YW
Sbjct: 580 RDRNRFHHFKDGTCSCRDYW 599


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/442 (45%), Positives = 298/442 (67%), Gaps = 3/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EPD++   ++ +  AKCG V  A+ +FD+M   + I WNAM++GYA+ G +REA+ +FH 
Sbjct: 256 EPDLL--ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHE 313

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   DV+ + +S+ S +SAC  +G+L+Q R  + Y+ R+  +  V + +AL+DM++KCG+
Sbjct: 314 MINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F    +R+V  W+++I G  ++G   +++ L+  M++ GV PN+VTF+ +L  
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+V EG   F+ M  ++ I P  +HY C++DL GRAG LD+A +VI  MP++P   
Sbjct: 434 CNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVT 492

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+AC+ +++ E+GE A+++L  ++  N G YV LSN+YA ++ WDRV  VR  MK
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K  GCS +EV   +  F  GD++HPRY EIE  +  I  RLK  G+VAN +  ++
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+ +EE E+TLC HSE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK+ +REI
Sbjct: 613 DLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREI 672

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHFK+G CSC  YW
Sbjct: 673 VVRDTNRFHHFKDGVCSCGDYW 694



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 140/256 (54%), Gaps = 6/256 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKS 70
           +VF    + DV  Q  +I+  AKC  +  AR +F+   +PER  ++W A+++ YAQ G+ 
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL +F  M+  DVK + V++VSVL+A T L  L QGR  H  + +  L++   L  +L
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
             MY+KCG +  A   F  MK  N+  W ++I G A NG   +++++F  M    VRP+ 
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           ++  S +  C  VG +E+ R  ++ + R +Y  + ++     L+D++ + G ++ A  V 
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGARLVF 381

Query: 250 NKMPMKPHAGAWGALL 265
           ++  +      W A++
Sbjct: 382 DRT-LDRDVVVWSAMI 396



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 6/243 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I A +  GD+  AR++FD++P      WNA++ GY++    ++AL ++  MQ+  V 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   +L AC+ L  L  GR+ H  + R      V +   L+ +Y+KC  +  A   
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 147 FWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           F G  + ER + +WT+++   A NG   ++LE+FS M++  V+P+ V  VSVL     + 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            +++GR  H   ++    IEP L     L  +Y + G++  A  + +KM   P+   W A
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNA 293

Query: 264 LLN 266
           +++
Sbjct: 294 MIS 296



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 3   AELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A++G L   + +++ +    +  DV   +A+I   AKCG V+ AR +FD   +RD + W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GY   G++REA+ L+  M+   V  N+V+ + +L AC H G + +G W    +  +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           ++         ++D+  + G++++A +    M  +  V  W +++  
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/450 (44%), Positives = 293/450 (65%)

Query: 12   QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            Q+V +     D      +++  + CG V  AR++FD M +RD +A+NAM+ GYA     +
Sbjct: 571  QQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGK 630

Query: 72   EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
            EAL LF  +Q   +K ++V+ +++L+AC + G+L+  +  H  + ++      +LG ALV
Sbjct: 631  EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALV 690

Query: 132  DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
              Y+KCG+ + A+  F  M +RNV +W ++IGG A +G G+  L+LF  MK  G++P+ V
Sbjct: 691  STYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIV 750

Query: 192  TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            TFVS+L  C   GL+EEGR +F SM R++GI P +EHYGC+VDL GRAG+LDE   +I  
Sbjct: 751  TFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKT 810

Query: 252  MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
            MP + +   WGALL ACR++ N  + E A+   ++L+  N   YV LS++YA +  WD  
Sbjct: 811  MPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSA 870

Query: 312  INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
              +R++M+ +GV K PG S IEV  ++H F A D +HP   +I   L +++  +K+ GYV
Sbjct: 871  AKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYV 930

Query: 372  ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
             +T  VM+D++E EKE+ +C HSE++AIA+GLIS   G PIRI KNLRVC DCH  TK I
Sbjct: 931  PDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFI 990

Query: 432  SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            +K+ +REI+ RD NRFHHFK+G CSC  YW
Sbjct: 991  TKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 142/248 (57%), Gaps = 4/248 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  Q A+IS  A+CG +  AR +F++M  +D I+W AM+ G A+ G   EAL +F  MQ
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K N V+  S+L+AC+   ALD GR  H  +    L     +   LV+MYS CG++ 
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M +R++  + ++IGG A +  G+++L+LF  +++ G++P++VT++++L  C 
Sbjct: 600 DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             G +E  +E H   ++  Y  +  L +   LV  Y + G   +AL V +KM MK +  +
Sbjct: 660 NSGSLEWAKEIHSLVLKDGYLSDTSLGN--ALVSTYAKCGSFSDALLVFDKM-MKRNVIS 716

Query: 261 WGALLNAC 268
           W A++  C
Sbjct: 717 WNAIIGGC 724



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 1/242 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           + +  HE D+   TA++   AKCG     R++F+++  RD IAWN M+ G A+ G   EA
Sbjct: 371 ILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEA 430

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             ++H MQ   +  N+++ V +L+AC +  AL  GR  H  + ++     +++  AL+ M
Sbjct: 431 SEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISM 490

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y++CG++  A   F  M  +++ +WT++IGGLA +G G ++L +F  M+QAG++PN VT+
Sbjct: 491 YARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTY 550

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            S+L  C     ++ GR        E G+         LV++Y   G + +A  V ++M 
Sbjct: 551 TSILNACSSPAALDWGRR-IHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT 609

Query: 254 MK 255
            +
Sbjct: 610 QR 611



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 153/318 (48%), Gaps = 38/318 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV     +++  AKCG +  AR++FD+M  +  ++W  ++ GYA CG S  A  +F  MQ
Sbjct: 278 DVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQ 337

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N ++ ++VL+A +   AL  G+  H +I     +  + +GTALV MY+KCG+  
Sbjct: 338 QEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYK 397

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  +  R++  W ++IGGLA  G  E++ E++  M++ G+ PN++T+V +L  C 
Sbjct: 398 DCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACV 457

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--------- 252
               +  GRE    + ++ G    +     L+ +Y R G + +A  + NKM         
Sbjct: 458 NPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWT 516

Query: 253 -------------------------PMKPHAGAWGALLNACRMYKNTEMGELASRKLVE- 286
                                     +KP+   + ++LNAC      + G    ++++E 
Sbjct: 517 AMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA 576

Query: 287 -LETKNHGAYVLLSNIYA 303
            L T  H A  L+ N+Y+
Sbjct: 577 GLATDAHVANTLV-NMYS 593



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 151/301 (50%), Gaps = 7/301 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D     A+I+   +CG ++ AR++++++   ER   +WNAM+ GY Q G   EAL L   
Sbjct: 175 DQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLRE 234

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ H + L   + + +LS+C    AL+ GR  HV   + RL   V +   +++MY+KCG+
Sbjct: 235 MQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGS 294

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +++A + F  M+ ++V +WT +IGG A  G  E + E+F  M+Q GV PN +T+++VL  
Sbjct: 295 IHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA 354

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                 ++ G+    S     G E  L     LV +Y + G   +   V  K+  +    
Sbjct: 355 FSGPAALKWGKT-VHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI- 412

Query: 260 AWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSN--IYAESKNWDRVINVRQ 316
           AW  ++       N  E  E+  +   E    N   YV+L N  +   + +W R I+ R 
Sbjct: 413 AWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRV 472

Query: 317 I 317
           +
Sbjct: 473 V 473



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           GK R A+ +   +Q    ++N    + +L  C  +  L  GR  H +I ++   +     
Sbjct: 121 GKDR-AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV 179

Query: 128 TALVDMYSKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
            AL++MY +CG++ +A   +  +   ER V++W +++ G    G  E++L+L   M+Q G
Sbjct: 180 NALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHG 239

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           +     T + +L  C     +E GRE H ++M+     +  +    C++++Y + G + E
Sbjct: 240 LALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFD--VNVANCILNMYAKCGSIHE 297

Query: 245 ALDVINKMPMKP 256
           A +V +KM  K 
Sbjct: 298 AREVFDKMETKS 309



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 108/256 (42%), Gaps = 79/256 (30%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMI------------------------------ 30
           MY+  G +   ++VFD + + D+V   AMI                              
Sbjct: 591 MYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT 650

Query: 31  -----SACAKCGDVDLARKM-----------------------------------FDEMP 50
                +ACA  G ++ A+++                                   FD+M 
Sbjct: 651 YINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMM 710

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           +R+ I+WNA++ G AQ G+ ++ L LF  M++  +K + V+ VS+LSAC+H G L++GR 
Sbjct: 711 KRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRR 770

Query: 111 AHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
               + R+  +  T+     +VD+  + G +++       M  + N   W +++G   ++
Sbjct: 771 YFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIH 830

Query: 169 G-------AGEKSLEL 177
           G       A E SL+L
Sbjct: 831 GNVPVAERAAESSLKL 846


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/442 (47%), Positives = 290/442 (65%), Gaps = 3/442 (0%)

Query: 23   VVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSREALHLFHLM 80
            V  Q +++     CG  + A K+FDEMP R  + ++WN+ML  +A  G+  E L +F  M
Sbjct: 839  VFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM 898

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
               D   +  ++VSVL+AC   GAL  GR  HVY+E+  L     +  AL+D+Y+KCG++
Sbjct: 899  LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSV 958

Query: 141  NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            N A   F  M   R V +WTS+I GLA NG G+++LELFSLM++  + P E+T V VL  
Sbjct: 959  NDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYA 1018

Query: 200  CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
            C   GLV++G  +FD M+ +YGI P +EH GC+VDL GRAGR++EA D I  MP++P+A 
Sbjct: 1019 CSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAV 1078

Query: 260  AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
             W  LL +C M+K  E+G++A  +LVEL+  + G YVLLSN+YA    W  V  +R+ M 
Sbjct: 1079 VWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMV 1138

Query: 320  AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
               V+K PG S++E+   V+EF  GD +HP   +I  ML EI+ RL+  GY+  T+ V+ 
Sbjct: 1139 KDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLA 1198

Query: 380  DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            DIEEEEKE  L  HSE++AIAF L+    G+PIRI+KNLR+C DCH    +ISKV++REI
Sbjct: 1199 DIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREI 1258

Query: 440  IVRDRNRFHHFKEGKCSCKGYW 461
            IVRDR+RFHHF+ G CSCK YW
Sbjct: 1259 IVRDRSRFHHFQGGACSCKDYW 1280



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 50/199 (25%)

Query: 21   PDVVCQTAMISAC-----------------------------------AKCGDVDLARKM 45
            PD     ++++AC                                   AKCG V+ AR++
Sbjct: 905  PDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRI 964

Query: 46   FDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
            F+EM   R  ++W +++ G A  G  +EAL LF LM+   +   E++MV VL AC+H G 
Sbjct: 965  FEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGL 1024

Query: 105  LDQGRWAHVYIERNRLKMTVT-----LGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTW 158
            +D G     Y +R +    ++     LG  +VD+  + G + +A D+   M  E N   W
Sbjct: 1025 VDDG---FRYFDRMKEDYGISPRIEHLG-CMVDLLGRAGRVEEAYDYIITMPLEPNAVVW 1080

Query: 159  TSVIGGLAMNGAGEKSLEL 177
             +++G  AM+    K LEL
Sbjct: 1081 RTLLGSCAMH----KKLEL 1095



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 30/227 (13%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL---NEVSMVSVLSACTHLGALDQGR 109
           DP   N +L   A   + R AL L      H  +L   +  +   ++ AC  L AL +G 
Sbjct: 771 DPFPLNTVLRIAAGSPRPRVALEL------HRRRLALPDTHTYPPLIQACARLLALREGE 824

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
             H    +N     V +  +LV +Y  CG    A   F  M  + RN+ +W S++   A 
Sbjct: 825 CLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAA 884

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
           NG   + L +F  M      P+  T VSVL  C   G +  GR           +  ++E
Sbjct: 885 NGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRR----------VHVYVE 934

Query: 228 HYG---------CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             G          L+DLY + G +++A  +  +M +     +W +L+
Sbjct: 935 KVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLI 981


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/433 (47%), Positives = 289/433 (66%), Gaps = 4/433 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I    KCG+V+ A  +F+ +  +D I+WN ++ GY      +EAL LF  M       
Sbjct: 275 ALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK---MTVTLGTALVDMYSKCGNMNKAM 144
           NEV+M+S+L AC HLGA+D GRW HVYI++ RLK      +L T+L+DMY+KCG++  A 
Sbjct: 335 NEVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKGVSNPSSLRTSLIDMYAKCGDIEAAQ 393

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  R++ +W ++I G AM+G    + ++FS M++ G+ P+++TFV +L  C   G
Sbjct: 394 QVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSG 453

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F SM  +Y I P LEHYGC++DL G +G   EA ++IN M M P    W +L
Sbjct: 454 MLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSL 513

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+GE  ++ L+++E KN G+YVLLSNIYA +  W+ V   R ++  KG+K
Sbjct: 514 LKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMK 573

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 574 KVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 634 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 693

Query: 445 NRFHHFKEGKCSC 457
            RFHHF +G CSC
Sbjct: 694 TRFHHFXDGVCSC 706



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 152/272 (55%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     +KVFD     DVV  TA+I   A  G +  A+KMFDE+P +D ++WNA+
Sbjct: 147 MYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNAL 206

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  +EAL LF  M   +VK +E +MV+VLSAC    +++ GR  H +I+ +  
Sbjct: 207 ISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGF 266

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+Y KCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 267 GSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQE 326

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PNEVT +S+L  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 327 MLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKC 386

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V + M +     +W A++    M+
Sbjct: 387 GDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMH 417



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 33/255 (12%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +FD + E + + WN M  G+A       AL+L+  M    +  N  +   +L AC  
Sbjct: 56  AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAK 115

Query: 102 LGALDQGRWAH-----------VYIERNRLKMTVTLG--------------------TAL 130
             A  +G+  H           +Y+  + + M V  G                    TAL
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  Y+  G +  A   F  +  ++V +W ++I G A  G  +++LELF  M +  V+P+E
Sbjct: 176 IKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDE 235

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T V+VL  C     +E GR+   S   ++G    L+    L+DLY + G ++ A  +  
Sbjct: 236 STMVTVLSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFE 294

Query: 251 KMPMKPHAGAWGALL 265
            +  K    +W  L+
Sbjct: 295 GLSYKD-VISWNTLI 308



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 38/236 (16%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+  P  + +T++I   AKCGD++ A+++FD M  R   +WNAM+ G+A  G+
Sbjct: 361 YIDKRLKGVSNPSSL-RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGR 419

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           +  A  +F  M+   ++ ++++ V +LSAC+H G LD GR  H++              +
Sbjct: 420 ANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR--HIF-------------RS 464

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           + + Y     +                 +  +I  L  +G  +++ E+ + M+   + P+
Sbjct: 465 MTEDYKITPKLEH---------------YGCMIDLLGHSGLFKEAEEMINSME---MDPD 506

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDE 244
            V + S+L+ C + G VE G     ++ +   IEP     Y  L ++Y  AGR +E
Sbjct: 507 GVIWCSLLKACKMHGNVELGESFAQNLIK---IEPKNSGSYVLLSNIYATAGRWNE 559


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/442 (47%), Positives = 292/442 (66%), Gaps = 3/442 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           V  + +++     CG  + A ++FDE+P  ER+ ++WN++L G+A  G+  E L +F  M
Sbjct: 157 VFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREM 216

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              +   +  ++VSVL+AC  +G L  GR  HV++ +  L      G AL+D+Y+KCG +
Sbjct: 217 LEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGV 276

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + A   F  M   R V +WTS+I GLA+NG G  +L+LFS+M++  + P E+T V VL  
Sbjct: 277 DDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYA 336

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV++G  +FD M+ EYGI P +EH GC+VDL GRAGR++EA + I  MP++P+A 
Sbjct: 337 CSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAV 396

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL AC M+K  E+GE A  +LVEL+  + G YVLLSN+YA    W  V  +R+ M 
Sbjct: 397 VWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMV 456

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             GV+K PG S++E+   V+EF  GD +HP  ++I  MLG+I+ RL+  GY+ +T+ V+ 
Sbjct: 457 THGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLA 516

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DIE+EEKE  L  HSE++AIAF L+    G PIRIVKNLRVC DCH   K+ISKV++REI
Sbjct: 517 DIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREI 576

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRDR+RFHHFK G CSCK YW
Sbjct: 577 IVRDRSRFHHFKGGACSCKDYW 598



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 6/219 (2%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           +P  DP + N +L  +A   + R AL L    + H    +  +   +L AC  L AL  G
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALH---RRHLAPPDTHTYPPLLQACARLLALRYG 141

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLA 166
              H    +N L   V +  +LV +Y  CG    A   F      ERN+ +W SV+ G A
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFA 201

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG   + L +F  M +    P+  T VSVL  C  +G++  GR        + G+    
Sbjct: 202 ANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRR-VHVFVAKVGLVGNA 260

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                L+DLY + G +D+A  +  +M +     +W +L+
Sbjct: 261 HAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLI 299


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/472 (43%), Positives = 308/472 (65%), Gaps = 12/472 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +G  ++VF  +    VV  T ++    +   V   R +FDEMPER+ +AW  M
Sbjct: 162 MYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIM 221

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY   G ++E+  L   M    +++LN V++ S+L+AC+  G L  GRW H Y  + +
Sbjct: 222 IAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTK 281

Query: 120 LK-MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            K + + +GTA+VDMY+KCG ++ A  FF  M +RNV +W +++ GLAM+G G  +L++F
Sbjct: 282 EKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIF 341

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M +   +P++VTF SVL  C   GLV++G  +F ++   YGI P +EHY C+VDL GR
Sbjct: 342 PQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGR 400

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL+EA  ++ +MP++P+    G+LL +C ++   ++GE   ++LV+L+ +N   ++LL
Sbjct: 401 AGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILL 460

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SN+YA +   +R  ++RQ++K +G+KK+PG S I V  +VH+F AGD++HPR  E+  ML
Sbjct: 461 SNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNML 520

Query: 359 GEISRRLKLAGYVANTNPVMYD---------IEEEEKEDTLCKHSEKVAIAFGLISLKEG 409
            E+  RL+LAGY  NT    +          +E+EEKE  L  HSEK+AI FGLIS   G
Sbjct: 521 DEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLISTGPG 580

Query: 410 VPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VP+ I KNLR+C DCH   K++SK++NREI++RDRNRFH FKEG CSC  YW
Sbjct: 581 VPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 35/285 (12%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLFH 78
           P+     A++   A CG    ARK+FDE+P   +D + W  ++  + +   S EAL +F 
Sbjct: 48  PETFLHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFV 107

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   VK +EV++V +   C  LG +  G   H  + +  L        A++DMY+K G
Sbjct: 108 EMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSG 167

Query: 139 NMNKAMDFFWGMK-------------------------------ERNVYTWTSVIGGLAM 167
            M +A   F+ MK                               ERN   WT +I G   
Sbjct: 168 LMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLD 227

Query: 168 NGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
           +G  ++S  L   ++    +  N VT  S+L  C   G +  GR       +    E  +
Sbjct: 228 SGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNI 287

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
                +VD+Y + GR+  A     KMP + +  +W A+L+   M+
Sbjct: 288 MVGTAMVDMYAKCGRIHIAFKFFKKMPQR-NVVSWNAMLSGLAMH 331



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 9/215 (4%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALVDMYSKCGNMNKAMDFFWGM-- 150
           +L +C    +LD G   H  I    +       L  AL+  Y+ CG   +A   F  +  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
             ++   WT+++G    +   +++L +F  M++ GV+P+EVT V +  GC  +G V  G 
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           +    M +  G+    +    ++D+Y ++G + EA  V  +M  +    +W  +L+    
Sbjct: 139 QGHGCMVK-MGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQS-VVSWTVILDGVIR 196

Query: 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
            +    G +      E+  +N  A+ ++   Y +S
Sbjct: 197 SEGVRNGRVV---FDEMPERNEVAWTIMIAGYLDS 228


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/464 (44%), Positives = 294/464 (63%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   +KVFD +   DVV  T +I A A+ GD+D A ++F  +P +D +AW +M
Sbjct: 153 MYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSM 212

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY+Q    ++AL  F  M+   V  +E+++V  +SAC  LG      W     E +R 
Sbjct: 213 VTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRF 272

Query: 121 KM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
                V +G+AL+DMYSKCGN+ +A + F GMKE NV++++S+I G A++G    +++LF
Sbjct: 273 GSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLF 332

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M + G++PN VTFV +   C   G+VE+G++ F +M+  YG+ P  +HY C+ DL GR
Sbjct: 333 YEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGR 392

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG L++AL ++  MPM+P+ G WGALL A  ++ N ++ E+ASR L ELE  N G Y+LL
Sbjct: 393 AGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLL 452

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDRE-VHEFFAGDETHPRYNEIEVM 357
           S  YA +  WD V  VR++M+ K ++K PGCS +E     +HEFFAGD  HP  NEI+  
Sbjct: 453 SKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKA 512

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++ +RLK  GY    N V YDI++E K   L  HSEK+A+A+GL+S   G  I+I+KN
Sbjct: 513 LDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMKN 572

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR+C DCH V    SK+  R+IIVRD  RFHHF  G CSC  +W
Sbjct: 573 LRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/445 (46%), Positives = 292/445 (65%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E ++   T ++   AK G V  A  +F  MP ++ ++W+AM+A +A+     +AL LF 
Sbjct: 214 YEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQ 273

Query: 79  LMQI--HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           LM +  HD   N V+MV+VL AC  L AL+QG+  H YI R  L   + +  AL+ MY +
Sbjct: 274 LMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGR 333

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +      F  MK R+V +W S+I    M+G G+K++++F  M   G  P+ ++F++V
Sbjct: 334 CGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITV 393

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLVEEG+  F+SM  +Y I P +EHY C+VDL GRA RLDEA+ +I  M  +P
Sbjct: 394 LGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEP 453

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               WG+LL +CR++ N E+ E AS  L ELE +N G YVLL++IYAE+K W    +V +
Sbjct: 454 GPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMK 513

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +++A+G++KLPGCS IEV R+V+ F + DE +P+  EI  +L ++S  +K  GYV  TN 
Sbjct: 514 LLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNV 573

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+YD++EEEKE  +  HSEK+A+AFGLI+  +G  IRI KNLR+C DCH VTK ISK  N
Sbjct: 574 VLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFAN 633

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           REI+VRD NRFHHFK+G CSC  YW
Sbjct: 634 REILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 129/259 (49%), Gaps = 10/259 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D    T +I+   + G +D ARK+FDE  ER    WNA+    A  G  +E L L+  
Sbjct: 110 DQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQ 169

Query: 80  MQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           M    +  +  +   VL AC      +  L +G+  H +I R+  +  + + T L+D+Y+
Sbjct: 170 MNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYA 229

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVRPNEVTF 193
           K G+++ A   F  M  +N  +W+++I   A N    K+LELF LM  +     PN VT 
Sbjct: 230 KFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTM 289

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           V+VL+ C  +  +E+G+  H   +RR  G++  L     L+ +YGR G +     V + M
Sbjct: 290 VNVLQACAGLAALEQGKLIHGYILRR--GLDSILPVLNALITMYGRCGEILMGQRVFDNM 347

Query: 253 PMKPHAGAWGALLNACRMY 271
             +    +W +L++   M+
Sbjct: 348 KNR-DVVSWNSLISIYGMH 365



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 11/238 (4%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N ++    + G  ++A+HL       +    + +   ++ +C    +L  G   H  +  
Sbjct: 51  NQLIQSLCKGGNLKQAIHLL----CCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVS 106

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           +       L T L++MY + G++++A   F   +ER +Y W ++   LAM G G++ L+L
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDL 166

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           +  M   G+  +  T+  VL+ C V    V  +++G+E    + R +G E  +     L+
Sbjct: 167 YVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILR-HGYEANIHVMTTLL 225

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           D+Y + G +  A  V   MP K    +W A++ AC       M  L   +L+ LE  +
Sbjct: 226 DVYAKFGSVSYANSVFCAMPTKNFV-SWSAMI-ACFAKNEMPMKALELFQLMMLEAHD 281


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/442 (45%), Positives = 298/442 (67%), Gaps = 3/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EPD++   ++ +  AKCG V  A+ +FD+M   + I WNAM++GYA+ G +REA+ +FH 
Sbjct: 256 EPDLL--ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHE 313

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   DV+ + +S+ S +SAC  +G+L+Q R  + Y+ R+  +  V + +AL+DM++KCG+
Sbjct: 314 MINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F    +R+V  W+++I G  ++G   +++ L+  M++ GV PN+VTF+ +L  
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+V EG   F+ M  ++ I P  +HY C++DL GRAG LD+A +VI  MP++P   
Sbjct: 434 CNHSGMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVT 492

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+AC+ +++ E+GE A+++L  ++  N G YV LSN+YA ++ WDRV  VR  MK
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K  GCS +EV   +  F  GD++HPRY EIE  +  I  RLK  G+VAN +  ++
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+ +EE E+TLC HSE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK+ +REI
Sbjct: 613 DLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREI 672

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHFK+G CSC  YW
Sbjct: 673 VVRDTNRFHHFKDGVCSCGDYW 694



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 140/256 (54%), Gaps = 6/256 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKS 70
           +VF    + DV  Q  +I+  AKC  +  AR +F+   +PER  ++W A+++ YAQ G+ 
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL +F  M+  DVK + V++VSVL+A T L  L QGR  H  + +  L++   L  +L
Sbjct: 204 MEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
             MY+KCG +  A   F  MK  N+  W ++I G A NG   +++++F  M    VRP+ 
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           ++  S +  C  VG +E+ R  ++ + R +Y  + ++     L+D++ + G ++ A  V 
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGARLVF 381

Query: 250 NKMPMKPHAGAWGALL 265
           ++  +      W A++
Sbjct: 382 DRT-LDRDVVVWSAMI 396



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 6/243 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I A +  GD+  AR++FD++P      WNA++ GY++    ++AL ++  MQ+  V 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   +L AC+ L  L  GR+ H  + R      V +   L+ +Y+KC  +  A   
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 147 FWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           F G  + ER + +WT+++   A NG   ++LE+FS M++  V+P+ V  VSVL     + 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            +++GR  H   ++    IEP L     L  +Y + G++  A  + +KM   P+   W A
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNA 293

Query: 264 LLN 266
           +++
Sbjct: 294 MIS 296



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 3   AELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A++G L   + +++ +    +  DV   +A+I   AKCG V+ AR +FD   +RD + W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GY   G++REA+ L+  M+   V  N+V+ + +L AC H G + +G W    +  +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADH 453

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           ++         ++D+  + G++++A +    M  +  V  W +++  
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/447 (44%), Positives = 298/447 (66%), Gaps = 3/447 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G H  ++  Q A+I++    G +  + K+FDEMP RD I+W+++++ +A+ G   EAL L
Sbjct: 123 GFHS-NIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTL 181

Query: 77  FHLMQI--HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
           F  MQ+   D+  + V M+SV+SA + LGAL+ G W H +I R  + +TV+LG+AL+DMY
Sbjct: 182 FQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMY 241

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           S+CG++++++  F  M  RNV TWT++I GLA++G G ++LE F  M ++G++P+ + F+
Sbjct: 242 SRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFM 301

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            VL  C   GLVEEGR  F SM  EYGIEP LEHYGC+VDL GRAG + EA D +  M +
Sbjct: 302 GVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRV 361

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +P++  W  LL AC  +    + E A  ++ EL+  + G YVLLSN Y    NW +   V
Sbjct: 362 RPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGV 421

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R  M+   + K PG S++ +D+  HEF +GD +HP++ EI   LG +   +KL GY  +T
Sbjct: 422 RNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPST 481

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
             V++DI+EEEKE +L  HSEK+A+AF L+  ++   IR++KNLR+C+DCH   K +S  
Sbjct: 482 KNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGF 541

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
           F+R+I++RDR+RFHHF++G CSC+ +W
Sbjct: 542 FDRDIVIRDRSRFHHFRKGSCSCRDFW 568



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 22/227 (9%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA------CTHLGALD 106
           DP  +NA++   A    S  AL LF  M   +V  +  +   +L +      C H   L 
Sbjct: 63  DPFPYNAVIRHVALHAPSL-ALALFSHMHRTNVPFDHFTFPLILKSSKLNPHCIHTLVLK 121

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
            G  +++Y++            AL++ Y   G+++ ++  F  M  R++ +W+S+I   A
Sbjct: 122 LGFHSNIYVQ-----------NALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFA 170

Query: 167 MNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
             G  +++L LF  M  K++ + P+ V  +SV+     +G +E G      + R  G+  
Sbjct: 171 KRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISR-IGVNL 229

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            +     L+D+Y R G +D ++ V ++MP + +   W AL+N   ++
Sbjct: 230 TVSLGSALIDMYSRCGDIDRSVKVFDEMPHR-NVVTWTALINGLAVH 275


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/494 (42%), Positives = 308/494 (62%), Gaps = 33/494 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISAC--------------------------- 33
           MY E G +G+ +KVFD + EP+ +   AM++AC                           
Sbjct: 150 MYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVM 209

Query: 34  ----AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
                K G+++LAR+MF EMP +D ++W+ M+ G+A  G   EA   F  +Q   ++ NE
Sbjct: 210 LAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNE 269

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
            S+  VLSAC   GAL+ G+  H +IE++ L   V++  AL+D YSKCGN+  A   F  
Sbjct: 270 TSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFER 329

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M ERN+ +WTS++  LAM+G GE+++ +F  M+++G+RP+E+ F+S+L  C   GLVE+
Sbjct: 330 IMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQ 389

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G E+FD M+  Y IEP +EHYGC+VDLYGRAG+L +A + + +MP+   A  W  LL AC
Sbjct: 390 GCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGAC 449

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
            M+ + ++ E    +L EL+  N   +VLLSN YA +  W    +VR+ M  + + K PG
Sbjct: 450 SMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPG 509

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-AGYVANTNPVMYDIEEEEKE 387
            S+IEVD+ ++ F AG + +    E    L EI RRL++  GYV     V++DIEEEEKE
Sbjct: 510 WSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKE 569

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
            ++  HSEK+A+AFG+  L +G  IRIVKNLR+C DCH V K+IS+++  EI+VRDR+RF
Sbjct: 570 GSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRF 629

Query: 448 HHFKEGKCSCKGYW 461
           H FK+G CSC+ YW
Sbjct: 630 HSFKDGYCSCRDYW 643



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 136/338 (40%), Gaps = 33/338 (9%)

Query: 5   LGCLGYCQKV--FDGIH--------EPDVVCQTAMISACA--KCGDVDLARKMFDEMPER 52
           L  L  C+ +  F  IH        E D      ++  CA      +D A ++F   P  
Sbjct: 9   LSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNP 68

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWA 111
           D    N ++ G  +  + +++L  F  M+ +     +  S   ++ A  +L ++  G   
Sbjct: 69  DVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQL 128

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H     + L   + +GT L+ MY +CG +  A   F  M E N   W +++      G  
Sbjct: 129 HCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDM 188

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
           +   ELF LM    VR N +++  +L G    G +E  RE F  M  +  +      +  
Sbjct: 189 KGGRELFDLMP---VR-NLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVS-----WST 239

Query: 232 LVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNACRMYKNTEMGE-----LASRK 283
           ++  +   G  +EA     ++    M+P+  +   +L+AC      E G+     +    
Sbjct: 240 MIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSG 299

Query: 284 LVELETKNHG---AYVLLSNIYAESKNWDRVINVRQIM 318
           L  + + N+     Y    N+      ++R++N R I+
Sbjct: 300 LAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIV 337


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/437 (46%), Positives = 289/437 (66%), Gaps = 4/437 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+++ A  +F  +  +D I+WN ++ GY      +EAL LF  M       
Sbjct: 235 ALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESP 294

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+S+L AC HLGA+D GRW HVYI++ RLK      +L T+L+DMYSKCG++  A 
Sbjct: 295 NDVTMLSILHACAHLGAIDIGRWIHVYIDK-RLKGVTNASSLRTSLIDMYSKCGDIEAAH 353

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  +++  W ++I G AM+G    + ++FS M++  ++P+++TFV +L  C   G
Sbjct: 354 QVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAG 413

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F SM   Y I P LEHYGC++DL G +G   EA ++I+ M M+P    W +L
Sbjct: 414 MLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSL 473

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+GE  ++ L ++E  N G+YVLLSNIYA +  W+ V  +R ++  KG+K
Sbjct: 474 LKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMK 533

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 534 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEE 593

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K    + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 594 FKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 653

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHF++G CSC  YW
Sbjct: 654 TRFHHFRDGVCSCNDYW 670



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +   L    KVFD     DVV  TA+++  A  G ++ AR MFDE+P +D ++WNAM
Sbjct: 107 MYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAM 166

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY + G  +EAL LF  M   +V+ +E +MV+V+SA    G+++ GR  H +I  +  
Sbjct: 167 ISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGF 226

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D YSKCG M  A   F G+  ++V +W  +IGG       +++L LF  
Sbjct: 227 GSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQE 286

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +S+L  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 287 MLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKC 346

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V N M  K    AW A++    M+
Sbjct: 347 GDIEAAHQVFNSMLHKS-LPAWNAMIFGFAMH 377



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 38/236 (16%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     + +T++I   +KCGD++ A ++F+ M  +   AWNAM+ G+A  G+
Sbjct: 321 YIDKRLKGVTNASSL-RTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGR 379

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           +  A  +F  M+ +++K ++++ V +LSAC+H G LD GR  H++               
Sbjct: 380 ANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGR--HIF--------------- 422

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
                       ++M   + +  + +  +  +I  L  +G  +++ E+ S M    + P+
Sbjct: 423 ------------RSMTHNYKITPK-LEHYGCMIDLLGHSGLFKEAEEMISTMT---MEPD 466

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDE 244
            V + S+L+ C + G VE G +   ++   + IEP     Y  L ++Y  AGR +E
Sbjct: 467 GVIWCSLLKACKMHGNVELGEKFAQNL---FKIEPNNPGSYVLLSNIYATAGRWNE 519



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 32/235 (13%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F+ + E + + WN M  G+A       AL L+  M    +  N  +   +L +C  
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 102 LGALDQGRWAH--------------------VYIERNRLK-----------MTVTLGTAL 130
           L A  +G   H                    +Y++  RL+             V   TAL
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           V  Y+  G +  A + F  +  ++V +W ++I G    G  +++LELF  M +  VRP+E
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            T V+V+      G +E GR+   S   ++G    L+    L+D Y + G ++ A
Sbjct: 196 STMVTVISASARSGSIELGRQ-VHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/420 (47%), Positives = 291/420 (69%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           AR +FD M +   + W+AM+ GY + G S +A+ LF  MQ   V+ +EV+++ VL+A   
Sbjct: 188 ARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAAD 247

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           LGAL+  RW   ++ER  +  +VTL  AL+D  +KCG+++ A+  F GM+ER V +WTSV
Sbjct: 248 LGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSV 307

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I  LAM G G++++ +F  MK AGVRP++V F+ VL  C   G+V+EG  +FDSM+ EYG
Sbjct: 308 IDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYG 367

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELAS 281
           I+P +EHYGC+VD++GRAG ++ A++ I+ MPMKP+   W  L+ ACR +   E+GE  +
Sbjct: 368 IDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESIT 427

Query: 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEF 341
           R L+     +   YV+LSN+YA ++ W     +R+ M  +G+KK+PGCS++E+D EVHEF
Sbjct: 428 RNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEF 487

Query: 342 FAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAF 401
            AGDE+HP++ EI +M+ E++R LK  G+++ T+ V+ D++EE+KE  L  HSEK+AIAF
Sbjct: 488 IAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAF 547

Query: 402 GLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            L+    G  +R+VKNLRVC DCH   K IS V+NREIIVRDR+RFH FK G CSC  +W
Sbjct: 548 VLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 13/161 (8%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +GI +   +C  A+I A AKCGDVD A  +F  M ER  ++W +++   A  G+ +EA+ 
Sbjct: 264 EGIGKSVTLCN-ALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVA 322

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT------A 129
           +F  M+   V+ ++V  + VL+AC+H G +D+G     Y   + +KM   +         
Sbjct: 323 VFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEG-----YGYFDSMKMEYGIDPKIEHYGC 377

Query: 130 LVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNG 169
           +VDM+ + G + +AM+F   M  + N   W +++     +G
Sbjct: 378 MVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHG 418



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 5/201 (2%)

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTALV 131
           A   F LM    V  N+ +   +L AC  L G    G  AH    +        +   L+
Sbjct: 115 AAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLI 174

Query: 132 DMYSKCGN--MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
            MYS  G   +  A + F  M + +V TW+++IGG    G    ++ LF  M+ +GVRP+
Sbjct: 175 HMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPD 234

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           EVT + VL     +G +E  R     + RE GI   +     L+D   + G +D A+ V 
Sbjct: 235 EVTVIGVLAAAADLGALELARWVGRFVERE-GIGKSVTLCNALIDALAKCGDVDGAVAVF 293

Query: 250 NKMPMKPHAGAWGALLNACRM 270
             M  +    +W ++++A  M
Sbjct: 294 QGMEERT-VVSWTSVIDALAM 313


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/460 (43%), Positives = 288/460 (62%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y E G L   ++++  +    VV +TAM++   K G V+LA ++F  M  ++ + WN+M+
Sbjct: 208 YVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGY +  ++ + L +F  M    V+ N +S+ SVL  C++L AL  GR  H  + ++ L 
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLS 327

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
              T  T+L+ MY KCG+++ A   F  M  ++V +W ++I G A +GAG K+L LF  M
Sbjct: 328 KDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKM 387

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           +   ++P+ +TFV+V+  C   G V+ G ++F SM++E+GIE    HY C++DL GRAGR
Sbjct: 388 RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGR 447

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEA+ +I +MP KPHA  +G LL ACR++KN ++ E A+R L+ L+  +   YV L+NI
Sbjct: 448 LDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANI 507

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA +  WD+V  VR++MK   V K+PG S IE+    HEF + D  HP    I   L E+
Sbjct: 508 YAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNEL 567

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             ++KLAGYV +    ++D+EEE KE  L  HSEK+AIAFGL+    G PIR+ KNLRVC
Sbjct: 568 DGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVC 627

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K IS +  REIIVRD  RFHHF+ G CSC  YW
Sbjct: 628 GDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 16/264 (6%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G +    ++FD I EPD V    M+    +   V+ A   F++MP +D  +WN +++G+A
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFA 178

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q G+ ++A  LF +M     + N VS  +++S     G L+        + +N    +V 
Sbjct: 179 QNGQMQKAFDLFSVMP----EKNGVSWSAMISGYVEHGDLEAAE----ELYKNVGMKSVV 230

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           + TA++  Y K G +  A   F  M  +N+ TW S+I G   N   E  L++F  M ++ 
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC---LVDLYGRAGRL 242
           VRPN ++  SVL GC  +  +  GR+    M +     P  +       L+ +Y + G L
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQ----MHQLVSKSPLSKDTTACTSLISMYCKCGDL 346

Query: 243 DEALDVINKMPMKPHAGAWGALLN 266
           D A  +  +MP K    +W A+++
Sbjct: 347 DSAWKLFLEMPRK-DVISWNAMIS 369


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/437 (46%), Positives = 297/437 (67%), Gaps = 4/437 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+++ A  +F+ +P +D I+WN ++ GY      +EAL LF  M       
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+S+L AC HLGA+D GRW HVYI++ RLK      +L T+L+DMY+KCG++  A 
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKGVTNASSLRTSLIDMYAKCGDIEAAH 424

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +  +++ +W ++I G AM+G  + S +LFS M++ G++P+++TFV +L  C   G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F +M ++Y + P LEHYGC++DL G +G   EA ++IN M M+P    W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+GE  +  L+++E +N G+YVLLSNIYA +  W+ V   R ++  KG+K
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 724

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHF++G CSC  YW
Sbjct: 725 TRFHHFRDGVCSCNDYW 741



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 160/284 (56%), Gaps = 3/284 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L    KVFD     DVV  TA+I   A  G ++ A+K+FDE+P +D ++WNAM
Sbjct: 178 MYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAM 237

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  +EAL LF  M   +V+ +E +MV+V+SAC   G+++ GR  H++I+ +  
Sbjct: 238 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGF 297

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+YSKCG +  A   F  +  ++V +W ++IGG       +++L LF  
Sbjct: 298 GSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQE 357

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +S+L  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 358 MLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKC 417

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASR 282
           G ++ A  V N +  K    +W A++    M+   +   +L SR
Sbjct: 418 GDIEAAHQVFNSILHKS-LSSWNAMIFGFAMHGRADASFDLFSR 460



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 33/255 (12%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F  + E + + WN M  G+A       AL L+  M    +  N  +   VL +C  
Sbjct: 87  AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146

Query: 102 LGALDQGRWAH-----------VYIERNRLKMTVTLG--------------------TAL 130
             A  +G+  H           +Y+  + + M V  G                    TAL
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  Y+  G +  A   F  +  ++V +W ++I G A  G  +++LELF  M +  VRP+E
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T V+V+  C   G +E GR+       ++G    L+    L+DLY + G L+ A  +  
Sbjct: 267 STMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 325

Query: 251 KMPMKPHAGAWGALL 265
           ++P K    +W  L+
Sbjct: 326 RLPYK-DVISWNTLI 339



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     + +T++I   AKCGD++ A ++F+ +  +   +WNAM+ G+A  G+
Sbjct: 392 YIDKRLKGVTNASSL-RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 450

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           +  +  LF  M+   ++ ++++ V +LSAC+H G LD GR  H++
Sbjct: 451 ADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR--HIF 493


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/447 (45%), Positives = 293/447 (65%), Gaps = 5/447 (1%)

Query: 1   MYAELGCLGYCQKVFDGI---HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           MYA+ G +   Q VFD +    +P+      +I    K G VD+AR +FD+M  RD I +
Sbjct: 279 MYAKCGDIAQAQAVFDAVGRGQKPEP--WNVIIDGYCKLGHVDIARSLFDQMGARDVITF 336

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+ GY   G+ R+AL LF  ++ H ++ +  ++VS+L+AC  LGAL QGR  H  IE+
Sbjct: 337 NSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQ 396

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             ++  V L TALVDMY KCG +++A   F  M ER+V+TW+++I GLA NG G  +LE 
Sbjct: 397 RIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALES 456

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  MK+ G +P  VT+++VL  C    L+ EGR+HF+ MR  + + P +EHYGC++DL  
Sbjct: 457 FCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLA 516

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G LDEA+ ++  MPM+P+A  W ++L+ACR++KN ++   A+  L++L  +    YV 
Sbjct: 517 RSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQ 576

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L NIY +S+ W     +R +M+ +GVKK  G S I V  +VH+F   D++HP   EI  M
Sbjct: 577 LYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITM 636

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + EI+RRLK AGY   T+ +  D++EEEKE  L  HSEK+AIAFGLISL   +PI I+KN
Sbjct: 637 MEEIARRLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKN 696

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDR 444
           LRVC DCH   K+IS+++NREIIVRDR
Sbjct: 697 LRVCEDCHSAIKLISQLWNREIIVRDR 723



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 148/284 (52%), Gaps = 33/284 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA LG     ++ FD +   D V    +I    + G +D AR++  + PER+ ++W ++
Sbjct: 147 MYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSL 206

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY++ G+  +A++ F+ M    V+ +EV+++  LSAC+ L  L+ GR  H+ + + R+
Sbjct: 207 IAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRI 266

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
           +MT  L   L+DMY+KCG++ +A   F           W                     
Sbjct: 267 QMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFD 326

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R+V T+ S+I G   +G    +L+LF  +++ G+R +  T VS+L  C  +G + +
Sbjct: 327 QMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQ 386

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           GR    S+ +   +E  +     LVD+Y + GR+DEA  V ++M
Sbjct: 387 GRALHASIEQRI-VEEDVYLVTALVDMYMKCGRVDEATAVFHRM 429


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/430 (48%), Positives = 283/430 (65%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +G  + +F+ + + DVV    MI+   K GD + A  +F  MPER+  +W +M
Sbjct: 172 LYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSM 231

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGY QCGK++EA+HLF  M+   VK NEV++V+VL+AC  LGALD G   H Y  R+  
Sbjct: 232 IAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF 291

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K  V +   L+DMY KCG + +A   F  M+ER V +W+++IGGLAM+G  E++L LFS 
Sbjct: 292 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 351

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M Q G+ PN VTF+ +L  C  +GL+ EGR  F SM R+YGI P +EHYGC+VDL  RAG
Sbjct: 352 MSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAG 411

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA + I  MPMKP+   WGALL ACR++KN EM E A + L+EL+  N G YV+LSN
Sbjct: 412 LLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSN 471

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAE+  W+    VR+ MK + VKK PG S I VD  VHEF AG+E+HP   +I     E
Sbjct: 472 IYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEE 531

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   ++L GYV NT+ V+ DIEE EK   + +HSEK+A+ FGL++     PIRI+KNLR+
Sbjct: 532 LLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRI 591

Query: 421 CWDCHDVTKM 430
           C DCH   ++
Sbjct: 592 CEDCHSAFQI 601



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 37/277 (13%)

Query: 33  CAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
           CA       A+++F+ + ++ P    WN+ L   A+     +A+ LF+ ++ +DV  +  
Sbjct: 70  CAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTF 129

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK-------- 142
           +  SVL AC +L  L  GR  H  +E+   +  + L   +V +Y+ CG M +        
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM 189

Query: 143 -----------------------AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                                  A D F  M ERNV +WTS+I G    G  ++++ LF+
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M++AGV+ NEVT V+VL  C  +G ++ G R H  S R  +G +  +     L+D+Y +
Sbjct: 250 KMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR--HGFKRNVRISNTLIDMYVK 307

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            G L+EA  V  +M  +    +W A++    M+   E
Sbjct: 308 CGCLEEACKVFEEMEERT-VVSWSAMIGGLAMHGRAE 343


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 303/468 (64%), Gaps = 14/468 (2%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           E G +   +++FD +   DVV  T MI      G +  AR++FDEMP+R+ +AW +M++G
Sbjct: 99  EDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG 158

Query: 64  -------------YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
                        Y + G   EAL LF LMQ   V+ +  S++SVLS C  L +LD GR 
Sbjct: 159 EKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQ 218

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
            H  + R++  + + + + L+ MY KCG++  A   F     +++  W S+I G A +G 
Sbjct: 219 VHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGF 278

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
           GEK+LE+F  M  + + P+E+TF+ VL  C   G V+EG E F+SM+ +Y ++P  EHY 
Sbjct: 279 GEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYA 338

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
           C+VDL GRAG+L+EA+++I  MP++  A  WGALL ACR +KN ++ E+A++KL++LE  
Sbjct: 339 CMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPN 398

Query: 291 NHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET-HP 349
           N G Y+LLSN+Y+    W  V+ +R+ M+AK ++K PGCS IEVD++VH F  G  T HP
Sbjct: 399 NAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHP 458

Query: 350 RYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEG 409
            +  I   LG++   L+ AGY  + + VM+D++EEEK  +L  HSEK+A+A+GL+ + EG
Sbjct: 459 EHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEG 518

Query: 410 VPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSC 457
           +PIR++KNLRVC D H   K+I++V  REII+RD NRFHHFK+G CSC
Sbjct: 519 MPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSC 566



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 24/259 (9%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +K+FD + E + +    ++S   + G +  ARK+FD+MPER+ ++W AM+ GY Q G  
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EA  LF  M     + N VS   +L      G +D+ R     +        V   T +
Sbjct: 73  EEAELLFWRMP----ERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK----DVVASTNM 124

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE-------------KSLEL 177
           +D     G + +A + F  M +RNV  WTS+I G   +G                ++L L
Sbjct: 125 IDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALAL 184

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLY 236
           FSLM++ GVRP+  + +SVL  C  +  ++ GR+ H   +R ++ I+ ++     L+ +Y
Sbjct: 185 FSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS--SVLITMY 242

Query: 237 GRAGRLDEALDVINKMPMK 255
            + G L  A  V ++   K
Sbjct: 243 IKCGDLVTAKRVFDRFSSK 261



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 27/238 (11%)

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNR 119
           +AGY Q  + REA  LF  M     + N +S   ++S     G + + R     + ERN 
Sbjct: 1   MAGYFQNKRPREARKLFDKMP----ETNTISWNGLVSGYVQNGMISEARKVFDKMPERN- 55

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               V   TA++  Y + G + +A   FW M ERNV +WT ++GGL  +G  +++ +LF 
Sbjct: 56  ----VVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFD 111

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE---------HYG 230
           +M    V    V   +++ G C  G + E RE FD M +   +  W            + 
Sbjct: 112 MMPVKDV----VASTNMIDGLCSEGRLIEAREIFDEMPQR-NVVAWTSMISGEKDDGTWS 166

Query: 231 CLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNACRMYKNTEMGELASRKLV 285
            ++ +Y R G   EAL + + M    ++P   +  ++L+ C    + + G     +LV
Sbjct: 167 TMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLV 224



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 21/203 (10%)

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  M E N  +W  ++ G   NG   ++ ++F  M +  V    V++ +++RG  
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGYV 67

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL+EE    F  M  E  +  W    G L++     GR+DEA  + + MP+K    + 
Sbjct: 68  QEGLIEEAELLFWRM-PERNVVSWTVMLGGLIE----DGRVDEARQLFDMMPVKDVVAST 122

Query: 262 GALLNAC---RMYKNTEM-GELASRKLVELET-----KNHGAYVLLSNIYAESKNWDRVI 312
             +   C   R+ +  E+  E+  R +V   +     K+ G +  +  IY         +
Sbjct: 123 NMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEAL 182

Query: 313 NVRQIMKAKGVK-KLPGCSVIEV 334
            +  +M+ +GV+   P  SVI V
Sbjct: 183 ALFSLMQREGVRPSFP--SVISV 203


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/438 (46%), Positives = 291/438 (66%), Gaps = 4/438 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+I    KCG+V+ A  +F+ +  +D I+WN ++ GY      +EAL LF  M      
Sbjct: 259 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG---TALVDMYSKCGNMNKA 143
            N+V+M+S+L AC HLGA++ GRW HVYI + RLK         T+L+DMY+KCG++  A
Sbjct: 319 PNDVTMLSILPACAHLGAIEIGRWIHVYINK-RLKGVANASSHRTSLIDMYAKCGDIEAA 377

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  +  R++ +W ++I G AM+G    + ++FS M++  + P+++TFV +L  C   
Sbjct: 378 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G+++ GR  F SM+ +Y I P LEHYGC++DL G +G   EA ++IN M M+P    W +
Sbjct: 438 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 497

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL AC+M+ N E+GE  ++ L+++E KN G+YVLLSNIYA +  W+ V  +R ++  KG+
Sbjct: 498 LLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 557

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           KK+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EE
Sbjct: 558 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 617

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           E KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RD
Sbjct: 618 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 677

Query: 444 RNRFHHFKEGKCSCKGYW 461
           R RFHHF++G CSC  YW
Sbjct: 678 RTRFHHFRDGVCSCNDYW 695



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 156/272 (57%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   +KVFD     DVV  TA+I+  A  G +  A+KMFDE+P +D ++WNAM
Sbjct: 132 MYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAM 191

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G ++EAL LF  M   +V+ +E +MVSV+SAC    +++ GR  H +I+ +  
Sbjct: 192 ISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGF 251

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+Y KCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 252 GSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQE 311

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +S+L  C  +G +E GR  H    +R  G+     H   L+D+Y + 
Sbjct: 312 MLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKC 371

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V + + +     +W A++    M+
Sbjct: 372 GDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMH 402



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 37/290 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q +  G+H  +    + +I  C      D    A  +F+ + E + + WN M  G+A 
Sbjct: 7   HAQMIKTGLHNTNYAL-SKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYI 115
                 AL+L+  M    +  N  +   +L +C    A  +G+  H           +Y+
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 116 ERNRLKMTVTLG--------------------TALVDMYSKCGNMNKAMDFFWGMKERNV 155
             + + M V  G                    TAL+  Y+  G +  A   F  +  ++V
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 185

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W ++I G A  G  +++LELF  M +  VRP+E T VSV+  C     +E GR+   S
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ-VHS 244

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              ++G    L+    L+DLY + G ++ A  +   +  K    +W  L+
Sbjct: 245 WIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD-VISWNTLI 293



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 50/243 (20%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +T++I   AKCGD++ A+++FD +  R   +WNAM+ G+A  G++  A  +F  M+ +++
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + ++++ V +LSAC+H G LD GR  H+                                
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGR--HI-------------------------------- 446

Query: 146 FFWGMKERNVYT-----WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            F  MKE    T     +  +I  L  +G  +++ E+ + M+   + P+ V + S+L+ C
Sbjct: 447 -FRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKAC 502

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALDV---INKMPMKP 256
            + G VE G  +  ++ +   IEP     Y  L ++Y  AGR +E   +   +N   MK 
Sbjct: 503 KMHGNVELGESYAQNLIK---IEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKK 559

Query: 257 HAG 259
             G
Sbjct: 560 VPG 562


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/463 (44%), Positives = 299/463 (64%), Gaps = 5/463 (1%)

Query: 3   AELGCL---GYCQKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+LG L    +  K+ D +  + DV    ++IS  +KC  VD+A  +F  +  +  ++WN
Sbjct: 243 ADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWN 302

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GYAQ G   EAL+ F  MQ  ++K +  +MVSV+ A   L    Q +W H  + R 
Sbjct: 303 AMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRR 362

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L   V + TALVDMY+KCG ++ A   F  M  R+V TW ++I G   +G G+ S+ELF
Sbjct: 363 FLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELF 422

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             MK+  ++PN++TF+  L  C   GLVEEG   F+SM+++YGIEP ++HYG +VDL GR
Sbjct: 423 KEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGR 482

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL++A D I KMP+KP    +GA+L AC+++KN ++GE A+ ++ +L   + G +VLL
Sbjct: 483 AGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLL 542

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           +NIYA +  W +V  VR IM+  G++K PGCS++E+  EVH F++G  +HP+  +I   L
Sbjct: 543 ANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYL 602

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
             +   ++ AGYV +TN + +D+E++ K   L  HSEK+AIAFGL++   G PI I KNL
Sbjct: 603 ETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNL 661

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH+ TK IS V  REIIVRD +RFH FK+G CSC  YW
Sbjct: 662 RVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 7/268 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++   T +++  AKC  ++ A  MFD MPERD + WN M++GYAQ G ++ AL L   M 
Sbjct: 64  NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMS 123

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + + +++VS+L A      L  G   H Y+ R   +  V + TALVDMYSKCG+++
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVS 183

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F GM  R V +W S+I G   +G  E ++ +F  M   GV+P  VT +  L  C 
Sbjct: 184 IARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACA 243

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +E G+     +  +  ++  +     L+ +Y +  R+D A D+   +  K    +W
Sbjct: 244 DLGDLERGK-FVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV-SW 301

Query: 262 GALL-----NACRMYKNTEMGELASRKL 284
            A++     N C         E+ SR +
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNI 329



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 132/248 (53%), Gaps = 2/248 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  V   TA++   +KCG V +AR +FD M  R  ++WN+M+ GY Q G +  A+ +F  
Sbjct: 163 ESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQK 222

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+   V+++  L AC  LG L++G++ H  +++ +L   V++  +L+ MYSKC  
Sbjct: 223 MLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKR 282

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A D F  ++ + + +W ++I G A NG   ++L  F  M+   ++P+  T VSV+  
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
              + +  + +     + R + ++  +     LVD+Y + G +  A  + + M  + H  
Sbjct: 343 LAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVI 400

Query: 260 AWGALLNA 267
            W A+++ 
Sbjct: 401 TWNAMIDG 408



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 2/227 (0%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ML GYA+      AL  F  M+   V+    +   +L  C     L +G+  H  +  + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               +   T +V+MY+KC  +N A + F  M ER++  W ++I G A NG  + +L L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M + G RP+ +T VS+L       L+  G      + R  G E  +     LVD+Y + 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRA-GFESLVNVSTALVDMYSKC 179

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           G +  A  + + M  +    +W ++++      + E   L  +K+++
Sbjct: 180 GSVSIARVIFDGMDHRT-VVSWNSMIDGYVQSGDAEGAMLIFQKMLD 225


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/443 (44%), Positives = 300/443 (67%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+  Q ++I+   KCG ++L+  +F+ M  RD  +W+A++A +A  G   E L +F  
Sbjct: 117 EGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGE 176

Query: 80  MQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M      +  E  +VSVLSACTHLGALD GR  HV + RN  +M V + T+L+DMY KCG
Sbjct: 177 MSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCG 236

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + K +  F  M ++N  +++ +I GLAM+G G ++L++FS M + G++P++V ++ VL 
Sbjct: 237 CIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLS 296

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG + F+ M+ E+GIEP ++HYGC+V L GRAG L++AL+ I  MP+KP+ 
Sbjct: 297 ACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNE 356

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL+AC+ + N E+GE+A++ L EL + N G YV+LSN+YA +K W+ V  +R  M
Sbjct: 357 VVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEM 416

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
             KG  + PG S+++V+R++++F + D +HP+   +  M+ ++  +LK  GY  +T+ V+
Sbjct: 417 ARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVL 476

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D++EEEK   L  HS+K+A+AF LI   +G PIRI +NLR+C DCH  TK+IS ++ RE
Sbjct: 477 FDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQRE 536

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I VRDRNRFHHFK+G CSC+ YW
Sbjct: 537 ITVRDRNRFHHFKDGTCSCRDYW 559



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 25  CQTAMISACAKC--GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           C + +++ CA    G +D A  +F ++ +     +N M+ GY        AL L++ M  
Sbjct: 19  CASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLE 78

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             V+ +  +  ++  AC  L ++++G   H YI +  L+  + +  +L++MY KCG +  
Sbjct: 79  RGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIEL 138

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCC 201
           +   F  M  R+V +W+++I   A  G   + L +F  M + G  RP E   VSVL  C 
Sbjct: 139 SCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACT 198

Query: 202 VVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +G ++ GR  H   +R    +   ++    L+D+Y + G +++ L +  +M  K
Sbjct: 199 HLGALDLGRCTHVTLLRNIREMNVIVQ--TSLIDMYVKCGCIEKGLSLFQRMVKK 251



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 49/256 (19%)

Query: 8   LGYCQKV--FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           LG C  V     I E +V+ QT++I    KCG ++    +F  M +++ ++++ M+ G A
Sbjct: 205 LGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLA 264

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--- 122
             G+  EAL +F  M    +K ++V  + VLSAC H G +D+G         NR+K+   
Sbjct: 265 MHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCF-----NRMKLEHG 319

Query: 123 ---TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
              T+     +V +  + G +NKA++    M                             
Sbjct: 320 IEPTIQHYGCIVHLMGRAGMLNKALEHIRSMP---------------------------- 351

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
                 ++PNEV +  +L  C     +E G     S+       P    Y  L ++Y RA
Sbjct: 352 ------IKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNP--GDYVVLSNMYARA 403

Query: 240 GRLDEALDVINKMPMK 255
            R ++   +  +M  K
Sbjct: 404 KRWEDVAKIRTEMARK 419


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/443 (47%), Positives = 295/443 (66%), Gaps = 2/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFH 78
           EP    QT +++  AKC +V LAR +FD M  +++  AW+AM+ GY++ G   EAL LF 
Sbjct: 163 EPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFR 222

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ  DV  +EV+MVSV+SAC   GALD GRW H +I+R  + + + L TAL+DMY+KCG
Sbjct: 223 EMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCG 282

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + +A   F  M ER+   W+++I GLA++G  E +L+LFS M +  VRPN VTF+ VL 
Sbjct: 283 LIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLS 342

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV EGR ++ +M+ E GI+P +E+YGC+VDL+ R+  LDEA   +  M + P++
Sbjct: 343 ACAHSGLVNEGRRYWSTMQ-ELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNS 401

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL A +     ++ + AS+KL+ELE  N   YVLLSN+YA +  WDRV  +R+ M
Sbjct: 402 VIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKM 461

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K   V  + GCS IE++  +H+F   D++HP   EI ++L EI+ R+  AG+   T  V+
Sbjct: 462 KENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREIADRVVRAGHKPWTAAVL 521

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+ EEEKE  LC+HSE++AIA+GL+  K    IR+VKNLR C DCH+V K++SK ++RE
Sbjct: 522 HDVGEEEKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVAKIVSKSYDRE 581

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRDR RFH F EG CSCK +W
Sbjct: 582 IIVRDRVRFHRFVEGSCSCKDFW 604



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 7/254 (2%)

Query: 42  ARKMFDEMPERDPIAWNAML----AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
           AR +FD++PE     +N+++    +       +   L    +++      N  ++   L 
Sbjct: 80  ARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 139

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVY 156
           AC+ + AL +GR  H    R  L+ +  + T L+++Y+KC  +  A   F GM  ++N+ 
Sbjct: 140 ACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 199

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
            W+++IGG +  G   ++L LF  M+ A V P+EVT VSV+  C   G ++ GR     +
Sbjct: 200 AWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFI 259

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
            R+ GI   LE    L+D+Y + G ++ A  V + M  +    AW A++    ++   E+
Sbjct: 260 DRK-GITVDLELSTALIDMYAKCGLIERAKGVFDAMAER-DTKAWSAMIVGLAIHGLVEV 317

Query: 277 GELASRKLVELETK 290
                 +++EL+ +
Sbjct: 318 ALKLFSRMLELKVR 331


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/460 (43%), Positives = 287/460 (62%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y E G L   ++++  +    VV +TAM++   K G V+LA ++F  M  ++ + WN+M+
Sbjct: 208 YVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGY +  ++ + L +F  M    V+ N +S+ SVL  C++L AL  GR  H  + ++ L 
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLS 327

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
              T  T+L+ MY KCG+++ A   F  M  ++V TW ++I G A +GAG K+L LF  M
Sbjct: 328 KDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKM 387

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           +   ++P+ +TFV+V+  C   G V+ G ++F SM++E+GIE    HY C++DL GRAGR
Sbjct: 388 RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGR 447

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEA+ +I +MP  PHA  +G LL ACR++KN ++ E A+R L+ L+  +   YV L+NI
Sbjct: 448 LDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANI 507

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA +  WD+V  VR++MK   V K+PG S IE+    HEF + D  HP    I   L E+
Sbjct: 508 YAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNEL 567

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             ++KLAGYV +    ++D+EEE KE  L  HSEK+AIAFGL+    G PIR+ KNLRVC
Sbjct: 568 DGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVC 627

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K IS +  REIIVRD  RFHHF+ G CSC  YW
Sbjct: 628 GDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 16/264 (6%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G +    ++FD I EPD V    M+    +   V  A   F++MP +D  +WN +++G+A
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFA 178

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q G+ ++A  LF +M     + N VS  +++S     G L+        + +N    +V 
Sbjct: 179 QNGQMQKAFDLFSVMP----EKNGVSWSAMISGYVEHGDLEAAE----ELYKNVGMKSVV 230

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           + TA++  Y K G +  A   F  M  +N+ TW S+I G   N   E  L++F  M ++ 
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC---LVDLYGRAGRL 242
           VRPN ++  SVL GC  +  +  GR+    M +     P  +       L+ +Y + G L
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQ----MHQLVSKSPLSKDTTACTSLISMYCKCGDL 346

Query: 243 DEALDVINKMPMKPHAGAWGALLN 266
           D A  +  +MP K     W A+++
Sbjct: 347 DSAWKLFLEMPRK-DVITWNAMIS 369


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/443 (45%), Positives = 299/443 (67%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+V   A+++  AK G +D AR +F+++P RD I+WN ++ GYAQ G + EA+  +++
Sbjct: 382 EVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNM 441

Query: 80  MQI-HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+    +  N+ + VS+L A +H+GAL QG   H  + +N L + V + T L+DMY KCG
Sbjct: 442 MEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCG 501

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  AM  F+ + +     W ++I  L ++G GEK+L+LF  M+  GV+ + +TFVS+L 
Sbjct: 502 RLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLS 561

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+E +  FD+M++EY I+P L+HYGC+VDL+GRAG L++A ++++ MP++  A
Sbjct: 562 ACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADA 621

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WG LL ACR++ N E+G  AS +L+E++++N G YVLLSNIYA    W+  + VR + 
Sbjct: 622 SIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLA 681

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G++K PG S + V   V  F+AG+++HP+  EI   L  ++ ++K  GYV + + V+
Sbjct: 682 RDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVL 741

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+EE+EKE+ L  HSE++AI FG+IS     PIRI KNLRVC DCH+ TK ISK+  RE
Sbjct: 742 QDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITERE 801

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHFK+G CSC  YW
Sbjct: 802 IIVRDSNRFHHFKDGICSCGDYW 824



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 149/259 (57%), Gaps = 6/259 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    A+I+  +K G +  A+++FD M  RD ++WN+++A Y Q      AL  F  
Sbjct: 280 ESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKE 339

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCG 138
           M    ++ + +++VS+ S    L     GR  H ++ R R L++ + +G ALV+MY+K G
Sbjct: 340 MLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLG 399

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVL 197
           +++ A   F  +  R+V +W ++I G A NG   ++++ +++M++   + PN+ T+VS+L
Sbjct: 400 SIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSIL 459

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                VG +++G + H   ++    ++ ++    CL+D+YG+ GRL++A+ +  ++P + 
Sbjct: 460 PAYSHVGALQQGMKIHGRLIKNCLFLDVFVA--TCLIDMYGKCGRLEDAMSLFYEIPQET 517

Query: 257 HAGAWGALLNACRMYKNTE 275
               W A++++  ++ + E
Sbjct: 518 SV-PWNAIISSLGIHGHGE 535



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 7/251 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    ++I   ++ G V++A K+F +MP RD  +WNAM++G+ Q G   EAL +   
Sbjct: 179 EHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDR 238

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+  +VK++ V++ S+L  C     +  G   H+Y+ ++ L+  V +  AL++MYSK G 
Sbjct: 239 MKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGR 298

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F GM+ R++ +W S+I     N     +L  F  M   G+RP+ +T VS+   
Sbjct: 299 LQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL--- 355

Query: 200 CCVVGLVEE---GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             + G + +   GR     + R   +E  +     LV++Y + G +D A  V  ++P + 
Sbjct: 356 ASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR- 414

Query: 257 HAGAWGALLNA 267
              +W  L+  
Sbjct: 415 DVISWNTLITG 425



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 123/248 (49%), Gaps = 8/248 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH-LFHLM 80
           DVV  T +++  A  GD+ L+   F  +  ++  +WN+M++ Y + G+ R+++  +  L+
Sbjct: 82  DVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELL 141

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            +  V+ +  +   VL AC  L     G   H ++ +   +  V +  +L+ +YS+ G +
Sbjct: 142 SLSGVRPDFYTFPPVLKACLSLA---DGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAV 198

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  M  R+V +W ++I G   NG   ++L +   MK   V+ + VT  S+L  C
Sbjct: 199 EVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPIC 258

Query: 201 CVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                V  G   H   ++  +G+E  +     L+++Y + GRL +A  V + M ++    
Sbjct: 259 AQSNDVVGGVLVHLYVIK--HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLV- 315

Query: 260 AWGALLNA 267
           +W +++ A
Sbjct: 316 SWNSIIAA 323


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/445 (44%), Positives = 286/445 (64%), Gaps = 5/445 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D+     +I   AKC   ++ARKMFD +   +RD + W  M+ GYAQ G +  AL LF  
Sbjct: 542 DLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSG 601

Query: 80  MQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTALVDMYSK 136
           M   D  +K N+ ++   L AC  L AL  GR  H Y+ RN    + + +   L+DMYSK
Sbjct: 602 MFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSK 661

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G+++ A   F  M +RN  +WTS++ G  M+G GE +L +F  M++  + P+ +TF+ V
Sbjct: 662 SGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVV 721

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G+V+ G   F+ M +++G++P  EHY C+VDL+GRAGRL EA+ +IN+MPM+P
Sbjct: 722 LYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEP 781

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               W ALL+ACR++ N E+GE A+ +L+ELE+ N G+Y LLSNIYA ++ W  V  +R 
Sbjct: 782 TPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRY 841

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
            MK  G+KK PGCS I+  + V  F+ GD +HP+  +I   L ++ +R+K  GYV  T+ 
Sbjct: 842 TMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSF 901

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            ++D+++EEK D L +HSEK+A+A+G+++L    PIRI KNLR+C DCH     ISK+  
Sbjct: 902 ALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIE 961

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
            EII+RD +RFHHFK G CSCKGYW
Sbjct: 962 HEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 19/292 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MYA+ G +    KVF  +   DVV   AM++  ++ G ++ A  +F+ M E     D + 
Sbjct: 408 MYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVT 467

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W A++ GYAQ G+  EAL +F  M     + N V++VS+LSAC  +GAL  G+  H Y  
Sbjct: 468 WTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAI 527

Query: 117 RNRLKM--------TVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLA 166
           +  L +         + +   L+DMY+KC +   A   F  +  K+R+V TWT +IGG A
Sbjct: 528 KFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYA 587

Query: 167 MNGAGEKSLELFSLMKQ--AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIE 223
            +G    +L+LFS M +    ++PN+ T    L  C  +  +  GR+ H   +R  YG  
Sbjct: 588 QHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG-S 646

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
             L    CL+D+Y ++G +D A  V + MP + +A +W +L+    M+   E
Sbjct: 647 VMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR-NAVSWTSLMTGYGMHGRGE 697



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 119/249 (47%), Gaps = 48/249 (19%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWN 58
           +A +   G+   VF        VC  A++S   KCG +  A  MFD++  R   D ++WN
Sbjct: 282 HATVSRSGFASNVF--------VCN-AVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWN 332

Query: 59  AMLAGYAQCGKSREALHLFHLMQI-HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           ++++ Y     +  AL LFH M   H +  + +S+V++L AC  L A  +GR  H +  R
Sbjct: 333 SVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIR 392

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-------------------------- 151
           + L   V +G A+VDMY+KCG M +A   F  MK                          
Sbjct: 393 SGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSL 452

Query: 152 ---------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
                    E +V TWT+VI G A  G G ++L++F  M   G RPN VT VS+L  C  
Sbjct: 453 FERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVS 512

Query: 203 VGLVEEGRE 211
           VG +  G+E
Sbjct: 513 VGALLHGKE 521



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 12/241 (4%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN ++      G  R+   L+  M+      +  +   V  AC +L +L  G   H  + 
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV---YTWTSVIGGLAMNGAGEK 173
           R+     V +  A+V MY KCG +  A + F  +  R +    +W SV+           
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANT 346

Query: 174 SLELFSLMKQAGV-RPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC 231
           +L LF  M    +  P+ ++ V++L  C  +     GR+ H  S+R     + ++ +   
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGN--A 404

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN----ACRMYKNTEMGELASRKLVEL 287
           +VD+Y + G+++EA  V  +M  K    +W A++     A R+     + E  + + +EL
Sbjct: 405 VVDMYAKCGKMEEANKVFQRMKFKD-VVSWNAMVTGYSQAGRLEHALSLFERMTEENIEL 463

Query: 288 E 288
           +
Sbjct: 464 D 464


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/457 (45%), Positives = 295/457 (64%), Gaps = 3/457 (0%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           GCL +   V  G+ + +    TA+ +   +  D+D AR+ FD MPE+   +WNAM++GYA
Sbjct: 342 GCL-HAHVVKAGL-DANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYA 399

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q G +  A+ LF  MQ  +V+ N +++ S LSAC  LGAL  G+W H  I   +L++ V 
Sbjct: 400 QNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVY 459

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           + TAL+DMY KCG++ +A   F  M  +NV +W  +I G  ++G G ++L+L+  M  A 
Sbjct: 460 VMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAH 519

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           + P   TF+SVL  C   GLV+EG   F SM  +YGI P +EH  C+VDL GRAG+L EA
Sbjct: 520 LHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEA 579

Query: 246 LDVINKMPMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
            ++I++ P      G WGALL AC ++K+ ++ +LAS+KL ELE +N G YVLLSN+Y  
Sbjct: 580 FELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTS 639

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
            K +     VRQ  K++ + K PGC++IE+    H F AGD  HP+ + I + L +++ +
Sbjct: 640 KKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAK 699

Query: 365 LKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDC 424
           +  AGY  +T   +YD+EEEEKE  +  HSEK+AIAFGL++ + G  IRI+KNLRVC DC
Sbjct: 700 MIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDC 759

Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           H+ TK+ISKV  R I+VRD +RFHHF++G CSC  YW
Sbjct: 760 HNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +IS  AKCGD++ AR +FD M   D + +NA+++GY+  G    ++ LF  +    ++
Sbjct: 260 TGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLR 319

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  ++V+++   +  G        H ++ +  L     + TAL  +Y +  +M+ A   
Sbjct: 320 PSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRA 379

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M E+ + +W ++I G A NG  E ++ LF  M+   VRPN +T  S L  C  +G +
Sbjct: 380 FDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGAL 439

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G+     +  E  +E  +     L+D+Y + G + EA  + + M  K +  +W  +++
Sbjct: 440 SLGKWVHKIIANE-KLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNK-NVVSWNVMIS 497

Query: 267 ----------ACRMYK---NTEMGELASRKLVELETKNHGAYV 296
                     A ++YK   +  +   +S  L  L   +HG  V
Sbjct: 498 GYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLV 540



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 122/271 (45%), Gaps = 38/271 (14%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ-IHDVKLNEVSMVSVLSACT 100
           ARK+FD +P  D + WN +LAG +      EAL  F  M     V+ +  ++ SVL A  
Sbjct: 177 ARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPAAA 232

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
            +     GR  H + E+  L     + T L+ +Y+KCG+M  A   F  M+  ++ T+ +
Sbjct: 233 EVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNA 292

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV-----------LRGCCVVGLVEEG 209
           +I G ++NG    S+ELF  +   G+RP+  T V++           L GC    +V+ G
Sbjct: 293 LISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAG 352

Query: 210 RE-----------------HFDSMRREYGIEP--WLEHYGCLVDLYGRAGRLDEALDVIN 250
            +                   DS RR +   P   +E +  ++  Y + G  + A+ +  
Sbjct: 353 LDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQ 412

Query: 251 KMP---MKPHAGAWGALLNACRMYKNTEMGE 278
           +M    ++P+     + L+AC       +G+
Sbjct: 413 QMQALNVRPNPLTISSALSACAQLGALSLGK 443



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           + +AL  +Y      N A   F  +   +   W +++ GL    +G ++LE F  M  AG
Sbjct: 160 VASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL----SGSEALEAFVRMAGAG 215

Query: 186 -VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            VRP+  T  SVL     V     GR    +   + G+         L+ LY + G ++ 
Sbjct: 216 SVRPDSTTLASVLPAAAEVANTTMGR-CVHAFGEKCGLAQHEHVVTGLISLYAKCGDMEC 274

Query: 245 ALDVINKM 252
           A  + ++M
Sbjct: 275 ARHLFDRM 282


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/461 (43%), Positives = 297/461 (64%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G      KVFD +    VV   ++I+   + G+++LA ++F EMPE + ++WN M
Sbjct: 368 MYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTM 427

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +    Q     EA+ L   MQ   +K + V+MV + SAC +LGALD  +W + YIE+N +
Sbjct: 428 IGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDI 487

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + + LGTALVDM+S+CG+   AM  F  M++R+V  WT+ I   A+ G  + ++ELF  
Sbjct: 488 HIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDE 547

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +  V+ ++  FV++L      G V++GR+ F +M + +G+ P + HYGC+VDL GRAG
Sbjct: 548 MLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAG 607

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA D++  MP+KP+   WG+ L ACR +KN E    A  K+ +L  +  G +VLLSN
Sbjct: 608 LLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSN 667

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA +  W+ V  VR  MK KG +K+ G S IEV   + EF +GDE+H    +I +ML E
Sbjct: 668 IYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQE 727

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I+ R+   GYV +T  V+ D++E+EKE  L +HSEK+A+A+GLI+  +G+PIR+VKNLR+
Sbjct: 728 INCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRM 787

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K++SK++ REI VRD NR+H FKEG CSC+ +W
Sbjct: 788 CSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 154/303 (50%), Gaps = 5/303 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    ++I   A CG VDL RK+FDEM ER+ ++W +++ GY+    ++EA+ LF  M 
Sbjct: 156 DLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMV 215

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N V+MV  +SAC  L  L+ G+     +    +K    +  AL+DMY KCG+M 
Sbjct: 216 EVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMY 275

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
              + F    ++N+  + +++     +G   + L +   M Q G RP++VT +S +  C 
Sbjct: 276 AVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACA 335

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +  G+     + R  G+E        ++D+Y + G+ + A  V + M  K     W
Sbjct: 336 QLGDLSVGKSSHAYVFRN-GLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVV-TW 393

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            +L+    + ++ E+ ELA R   E+   N  ++  +     ++  ++  I++ + M+ +
Sbjct: 394 NSLIAG--LVRDGEL-ELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQ 450

Query: 322 GVK 324
           G+K
Sbjct: 451 GIK 453



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 68/312 (21%)

Query: 20  EPDVVCQTAMISACAK-----------------------------------CGDVDLARK 44
           EP+ V     ISACAK                                   CGD+   R+
Sbjct: 220 EPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVRE 279

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +FDE  +++ + +N +++ Y Q G + E L +   M     + ++V+M+S ++AC  LG 
Sbjct: 280 IFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGD 339

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           L  G+ +H Y+ RN L+    +  A++DMY KCG    A   F  M  + V TW S+I G
Sbjct: 340 LSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAG 399

Query: 165 LAMNGAGEKSLELFSLMKQA-------------------------------GVRPNEVTF 193
           L  +G  E +L +F  M ++                               G++ + VT 
Sbjct: 400 LVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTM 459

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           V +   C  +G ++  +  +  + +   I   ++    LVD++ R G    A+ V   M 
Sbjct: 460 VGIASACGYLGALDLAKWIYTYIEKN-DIHIDMQLGTALVDMFSRCGDPLNAMRVFENME 518

Query: 254 MKPHAGAWGALL 265
            K    AW A +
Sbjct: 519 -KRDVSAWTAAI 529



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 116/233 (49%), Gaps = 7/233 (3%)

Query: 29  MISACAKCG---DVDLARKMF--DEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQI 82
           +I+AC + G    ++ A   F  DE  +      N ++ GYA  G  +EA+ ++ H++ +
Sbjct: 56  LIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIV 115

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +  +  +   +LSAC+ + A  +G   H  + +  L   + +  +L+  Y+ CG ++ 
Sbjct: 116 MGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDL 175

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
               F  M ERNV +WTS+I G ++    ++++ LF  M + GV PN VT V  +  C  
Sbjct: 176 GRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAK 235

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +  +E G++  + M  E G++        L+D+Y + G +    ++ ++   K
Sbjct: 236 LKDLELGKKVCNLM-TELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDK 287


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 297/437 (67%), Gaps = 1/437 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIHD 84
           +  ++ A AKCG+V L+RK+FD+M E+D ++WN+M+A YAQ G S +A  +FH +++   
Sbjct: 230 ENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGG 289

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
            K NEV++ ++L AC H GAL  G   H  + +      V + T+++DMY KCG    A 
Sbjct: 290 GKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMAR 349

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           + F GMKE+NV +WT++I G  M+G   ++L++F  M  AGV+PN +TF+SVL  C   G
Sbjct: 350 NAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAG 409

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
            +EEG   F++M  EY +EP +EHYGC+VDL GRAG + EA ++I  M ++     WG+L
Sbjct: 410 FLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSL 469

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L ACR++K+ E+ E+++R+L +L+  N G YVLL+NIYA++  W  V  +R ++K +G+ 
Sbjct: 470 LAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLV 529

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PG S++E+   VH F  GD+ HP++ +I   L E+S +L+ AGYV N   V++D++EE
Sbjct: 530 KPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEE 589

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  +  HSEK+A+AFG+++   G  I ++KNLRVC DCH V K+ISK+ +REIIVRD 
Sbjct: 590 EKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDA 649

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHFK+G CSC  YW
Sbjct: 650 KRFHHFKDGLCSCGDYW 666



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 53/297 (17%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+   +A+I   +KCG +  AR +FDE+P R+ + W +++ GY Q   + EAL +F  
Sbjct: 114 ESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKE 173

Query: 80  MQIHD---------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
                           ++ V+M+SVLSAC+ +         H    +  L   + +   L
Sbjct: 174 FLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTL 233

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPN 189
           +D Y+KCG ++ +   F  M E++V +W S+I   A NG    + E+F  ++K  G + N
Sbjct: 234 LDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYN 293

Query: 190 EVTFVSVLRGC-----------------------------------CVVGLVEEGREHFD 214
           EVT  ++L  C                                   C  G  E  R  FD
Sbjct: 294 EVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFD 353

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
            M +E  +  W      ++  YG  G   EALDV  +M    +KP+   + ++L AC
Sbjct: 354 GM-KEKNVRSWT----AMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAAC 405



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 18/249 (7%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           +  +A        L  K FD     D  +WN+++A  A+ G S E+L  F  M+  D+K 
Sbjct: 24  STTAAATNTNLTTLFNKYFDRT---DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKP 80

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  +    + +C+ L  L+ G+ AH        +  + + +AL+DMYSKCG ++ A   F
Sbjct: 81  NRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLF 140

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM---------KQAGVRPNEVTFVSVLR 198
             +  RN+ TWTS+I G   N    ++L +F            ++ G   + V  +SVL 
Sbjct: 141 DEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLS 200

Query: 199 GCCVVG--LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            C  V    V EG      +  + G++  +     L+D Y + G +  +  V + M  K 
Sbjct: 201 ACSRVSNKAVSEG---VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKD 257

Query: 257 HAGAWGALL 265
              +W +++
Sbjct: 258 -VVSWNSMI 265



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V+  T++I    KCG  ++AR  FD M E++  +W AM+AGY   G +REAL +F+ M 
Sbjct: 328 NVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMI 387

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              VK N ++ +SVL+AC+H G L++G RW +       ++  V     +VD+  + G +
Sbjct: 388 WAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYI 447

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
            +A +    MK  R+   W S++  
Sbjct: 448 KEAYNLIKSMKVRRDFVLWGSLLAA 472


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/502 (43%), Positives = 299/502 (59%), Gaps = 45/502 (8%)

Query: 1    MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLA------------------ 42
            MY + GCL    +V D +   DVV   ++++ CA+ G  D A                  
Sbjct: 1170 MYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT 1229

Query: 43   -------------------RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
                               ++MF ++  +  ++WN M+A Y       EA+ +F  M+ H
Sbjct: 1230 MASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDH 1289

Query: 84   DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
             V  + +S+ SVL AC  L AL  GR  H Y+ R RL+  + L  AL+DMY+KCG +  A
Sbjct: 1290 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 1349

Query: 144  MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
             + F  MK R+V +WTS+I    MNG G  ++ LFS M+  G+ P+ + FVSVL  C   
Sbjct: 1350 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 1409

Query: 204  GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            GL++EGR +F  M  E  I P +EH+ C+VDL GRAG++DEA   I +MPM+P+   WGA
Sbjct: 1410 GLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGA 1469

Query: 264  LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
            LL+ACR+Y N  +G LA+ +L +L  +  G YVLLSNIYA++  W+ V  VR IMK KG+
Sbjct: 1470 LLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI 1529

Query: 324  KKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KK+PG S  E+D  VH F AGD++HP+    Y E++V++G    ++K AGYV  T+  ++
Sbjct: 1530 KKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVG----KMKEAGYVPETDSALH 1585

Query: 380  DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            D+EEE+KE  L  HSEK+AIAF +++   G PIRI KNLRVC DCH   K+ISK+  REI
Sbjct: 1586 DVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREI 1645

Query: 440  IVRDRNRFHHFKEGKCSCKGYW 461
             +RD NRFHHF  G CSC  YW
Sbjct: 1646 TIRDTNRFHHFYNGVCSCGDYW 1667



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 29   MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
            ++ A A CG+    R +FDE+P+++ + +N M+  Y       +AL +F  M  H +  +
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 89   EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
              +   VL A +    L  G   H  + R  L + V +G  L+ MY KCG + +A     
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 149  GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL--V 206
             M  R+V +W S++ G A NG  + +LE+   M+  G++P+  T  S+L       L  V
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 207  EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGA 263
               +E F  +  +      L  +  ++ +Y       EA+D+  +M    + P A +  +
Sbjct: 1246 SFVKEMFMKLANKS-----LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300

Query: 264  LLNAC 268
            +L AC
Sbjct: 1301 VLPAC 1305



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 118/249 (47%), Gaps = 35/249 (14%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            +V     +IS   KCG +  A ++ DZMP RD ++WN+++AG A+ G+  +AL +   M+
Sbjct: 1160 NVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 1219

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  +K +  +M S+L A T+   LD                                N++
Sbjct: 1220 LLGLKPDAGTMASLLPAVTNT-CLD--------------------------------NVS 1246

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
               + F  +  +++ +W  +I     N    +++++F  M+   V P+ ++  SVL  C 
Sbjct: 1247 FVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACG 1306

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             +  +  GR   + + R+  ++P L     L+D+Y + G L+ A +V ++M  +    +W
Sbjct: 1307 DLSALLLGRRIHEYVVRKR-LQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSW 1364

Query: 262  GALLNACRM 270
             ++++A  M
Sbjct: 1365 TSMISAYGM 1373



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 2/149 (1%)

Query: 120  LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            L    +LG  L+  Y+ CG        F  + ++NV  +  +I     N     +L +F 
Sbjct: 1056 LHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFK 1115

Query: 180  LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
             M   G+ P+  T+  VL+       +  G +   ++ R  G++  +     L+ +YG+ 
Sbjct: 1116 NMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVR-VGLDLNVFVGNGLISMYGKC 1174

Query: 240  GRLDEALDVINKMPMKPHAGAWGALLNAC 268
            G L EA  V+++MP +    +W +L+  C
Sbjct: 1175 GCLVEACRVLDZMPCR-DVVSWNSLVAGC 1202


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/440 (45%), Positives = 294/440 (66%), Gaps = 2/440 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ- 81
           VV   A++   AK G +D A K+F+ +P +D ++WN +++GY Q G + EA+ ++ +M+ 
Sbjct: 410 VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++KLN+ + VS+L+A  H+GAL QG   H ++ +  L + V +GT L+D+Y KCG + 
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLV 529

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            AM  F+ +   +   W ++I    ++G GEK+L+LF  M+  GV+P+ VTF+S+L  C 
Sbjct: 530 DAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACS 589

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EG+  F  M+ EYGI+P L+HYGC+VDL GRAG L+ A D I  MP+ P A  W
Sbjct: 590 HSGLVDEGKWFFHLMQ-EYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIW 648

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACR++ N E+G+ AS +L E++++N G YVLLSNIYA    W+ V  VR + + +
Sbjct: 649 GALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARER 708

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK PG S IEV+R V  F+ G+++HP+  EI   L  ++ ++K  GY+ + + V+ D+
Sbjct: 709 GLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDV 768

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EE+EKE  L  HSE++AIAFG+IS      IRI KNLRVC DCH+ TK IS++  REI+V
Sbjct: 769 EEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVV 828

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK G CSC  YW
Sbjct: 829 RDSKRFHHFKNGICSCGDYW 848



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 142/284 (50%), Gaps = 25/284 (8%)

Query: 1   MYAELGCLGYCQKVFDG--IH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMP 50
            Y     L  CQ + DG  IH        + DV    ++I   ++ G V +AR +FD+MP
Sbjct: 175 FYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMP 234

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
            RD  +WNAM++G  Q G + +AL +   M++  + ++ V++ S+L  C  LG +     
Sbjct: 235 FRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATL 294

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
            H+Y+ ++ L+  + +  AL++MY+K GN+  A   F  M  R+V +W S+I     N  
Sbjct: 295 IHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDD 354

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS-------MRREYGIE 223
              +   F  M+  G+ P+ +T VS      +  +  + R++ +S       MRR + +E
Sbjct: 355 PVTARGFFFKMQLNGLEPDLLTLVS------LASIAAQSRDYKNSRSVHGFIMRRGWLME 408

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             +     ++D+Y + G +D A  V N +P+K    +W  L++ 
Sbjct: 409 AVVIG-NAVMDMYAKLGVIDSAHKVFNLIPVKD-VVSWNTLISG 450



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 179/352 (50%), Gaps = 15/352 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++    A+I+  AK G++  A+K+F +M  RD ++WN+++A Y Q      A   F  
Sbjct: 305 EFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFK 364

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVDMYSKCG 138
           MQ++ ++ + +++VS+ S           R  H +I  R  L   V +G A++DMY+K G
Sbjct: 365 MQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLG 424

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVL 197
            ++ A   F  +  ++V +W ++I G   NG   +++E++ +M++   ++ N+ T+VS+L
Sbjct: 425 VIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSIL 484

Query: 198 RGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                VG +++G R H   ++    ++ ++    CL+DLYG+ GRL +A+ +  ++P + 
Sbjct: 485 AAYAHVGALQQGMRIHGHLIKTNLHLDVFVG--TCLIDLYGKCGRLVDAMCLFYQVP-RE 541

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLLSNIYAESKNWDRVINVR 315
            +  W A+++   ++ + E      R++ +   K +H  ++ L +  + S   D      
Sbjct: 542 SSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFF 601

Query: 316 QIMKAKGVK---KLPGCSVIEVDRE-----VHEFFAGDETHPRYNEIEVMLG 359
            +M+  G+K   K  GC V  + R       ++F      HP  +    +LG
Sbjct: 602 HLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLG 653



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 166/353 (47%), Gaps = 20/353 (5%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIHDVKL 87
           +++  A  GDV L+R  FD++  +D   WN+M++ Y + G  REA+  F+ L+ +   + 
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +   VL AC     L  GR  H ++ +   +  V +  +L+ MYS+ G +  A   F
Sbjct: 174 DFYTFPPVLKACQ---TLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLF 230

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M  R++ +W ++I GL  NG   ++L++   M+  G+  + VT  S+L  C  +G + 
Sbjct: 231 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIS 290

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
                H   ++  +G+E  L     L+++Y + G L +A  V  +M ++    +W +++ 
Sbjct: 291 TATLIHLYVIK--HGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRD-VVSWNSIIA 347

Query: 267 ACRMYKN--TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           A     +  T  G     +L  LE  +    V L++I A+S+++    +V   +  +G  
Sbjct: 348 AYEQNDDPVTARGFFFKMQLNGLE-PDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWL 406

Query: 325 KLPGCSVIEVDREVHEFFAG----DETHPRYNEIEVMLGEISRRLKLAGYVAN 373
                  + +   V + +A     D  H  +N I V    +S    ++GY  N
Sbjct: 407 ----MEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLISGYTQN 454



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T +I    KCG +  A  +F ++P    + WNA+++ +   G   +AL LF  MQ
Sbjct: 511 DVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQ 570

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK + V+ +S+LSAC+H G +D+G+W    ++   +K ++     +VD+  + G + 
Sbjct: 571 DEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLE 630

Query: 142 KAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            A DF   M    +   W +++G   ++G  E  L  F+  +   V    V +  +L   
Sbjct: 631 MAYDFIKDMPLHPDASIWGALLGACRIHGNIE--LGKFASDRLFEVDSENVGYYVLLSNI 688

Query: 201 CVVGLVEEGREHFDSMRREYGIE 223
                  EG +   S+ RE G++
Sbjct: 689 YANVGKWEGVDKVRSLARERGLK 711


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/440 (46%), Positives = 296/440 (67%), Gaps = 17/440 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++    ++++  +K GD+  AR +FD++ +RD                  EAL+LFH MQ
Sbjct: 152 EIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD-----------------TEALNLFHRMQ 194

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +KL+ V++VS L AC  LG LDQG+W H YI+++ +++   LG  L+DMY+KCG++ 
Sbjct: 195 TAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLE 254

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A++ F  M+E+ V  WT++I G A++G G ++LE F  M+ AGV PN++TF  +L  C 
Sbjct: 255 EAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 314

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV E +  F+SM R +G +P +EHYGC+VDL GRAG L EA ++I  MP+KP+A  W
Sbjct: 315 HAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIW 374

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALLNAC ++ N E+G+   + L++++  + G Y+ L++I+A +  W++   VR+ MK +
Sbjct: 375 GALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQ 434

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GV KLPGCSVI V+   HEF AGDE+HP+  EI+ ML +I  RL+  GY      ++ D+
Sbjct: 435 GVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDL 494

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           E++EKE  +  HSEK+A+ FGLIS K G+ IRIVKNLRVC DCH V K+ISKV+ REI++
Sbjct: 495 EDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILM 554

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR RFH FK+G C+C  YW
Sbjct: 555 RDRTRFHLFKDGNCTCGDYW 574



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 25/250 (10%)

Query: 22  DVVCQTAMISACAK--CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D +  + +++ CA    G +  AR +FD +   +   WN M+ GY+   +  EAL L+H 
Sbjct: 49  DEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHH 108

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M  H V  N  +   +L AC+ + AL++ +  H +I +      +    +L+++YSK G+
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + +R+                  ++L LF  M+ AG++ + V  VS L+ 
Sbjct: 169 IKSARLLFDQVDQRDT-----------------EALNLFHRMQTAGIKLDNVALVSTLQA 211

Query: 200 CCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMKPH 257
           C  +G++++G+  H    + E  I+P L   GC L+D+Y + G L+EA++V  KM  K  
Sbjct: 212 CADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKMEEKG- 267

Query: 258 AGAWGALLNA 267
              W A+++ 
Sbjct: 268 VSVWTAMISG 277



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D +    +I   AKCGD++ A ++F +M E+    W AM++GYA  G+ REAL  F  
Sbjct: 234 EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMK 293

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCG 138
           MQ   V+ N+++   +L+AC+H G + + +     +ER +  K ++     +VD+  + G
Sbjct: 294 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 353

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
            + +A +    M  + N   W +++    ++G  E   ++  ++ Q
Sbjct: 354 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQ 399


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/442 (44%), Positives = 298/442 (67%), Gaps = 3/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    +++   AKCG+V+ AR +FD M ER+ I+WN+ML+GY Q G+  +AL LF+ MQ
Sbjct: 267 DVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQ 326

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +   N V+ + ++SAC++LG+   GR  H ++  +++ +  TL  A++DMY KCG+++
Sbjct: 327 ASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLD 386

Query: 142 KAMDFFWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            A++ F    + ER+V +W  +I G  ++G G+++LELFS M+  GV PN++TF S+L  
Sbjct: 387 TAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSA 446

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL++EGR+ F  M +   + P ++HY C+VD+ GRAG L+EA  +I K+P +P   
Sbjct: 447 CSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDE 505

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL ACR++ NTE+GE+A+  L +LE ++ G YVL+SNIYA S  W  V  VRQ MK
Sbjct: 506 VWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMK 565

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           ++G+KK    SVIE   EVH F   D++ P Y E+   +  ++  +K+ GYV + + V++
Sbjct: 566 SRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLH 625

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E E+KE  L  HSEK+A+AFG++ + +G+PI++ KNLRVC DCH   K IS ++ R+I
Sbjct: 626 DVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKI 685

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHF+ G+CSC  YW
Sbjct: 686 IVRDGNRFHHFQGGRCSCGDYW 707



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 143/271 (52%), Gaps = 11/271 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  + A++   AKCG++  A ++FD M  RD + W AM+  Y Q  +  +AL LF  MQ
Sbjct: 166 DLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQ 225

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWA---HVYIERNRLKMTVTLGTALVDMYSKCG 138
                 +E++ +SV SA   +G L  GR A   H Y   N     V++G ++V MY+KCG
Sbjct: 226 EEGFLGDEITAISVASA---VGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCG 282

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+ +A   F  M+ERN  +W S++ G   NG    +L LF+ M+ +   PN VT + ++ 
Sbjct: 283 NVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVS 342

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM-KP 256
            C  +G    GR+ H   +  +  I+  L +   ++D+Y + G LD A+++ N   + + 
Sbjct: 343 ACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYMKCGDLDTAVEMFNNCELGER 400

Query: 257 HAGAWGALLNACRMYKN-TEMGELASRKLVE 286
              +W  L++   ++ +  E  EL SR  VE
Sbjct: 401 DVSSWNVLISGYGVHGHGKEALELFSRMQVE 431



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 130/307 (42%), Gaps = 55/307 (17%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMP------ERDPIAW--NAMLAGYAQCGK 69
           +H P  + +  +I   +K GD+  AR +FD          + P ++  N ML  YA  G+
Sbjct: 55  LHTPHFLAR--LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGR 112

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTVTLGT 128
           S EA+ L+  MQ   V +N  +   VL  C + LGA+  G   H  + R      + +  
Sbjct: 113 SYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRTGFGSDLFVEA 171

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALVDMY+KCG +  A + F  M  R+V  WT++I          K+L LF  M++ G   
Sbjct: 172 ALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLG 231

Query: 189 NEVTFVSVLR-----------------------------GCCVVGL------VEEGREHF 213
           +E+T +SV                               G  +VG+      VE  R  F
Sbjct: 232 DEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVF 291

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK---PHAGAWGALLNACRM 270
           D M    GI      +  ++  Y + GR  +AL + N+M      P+      +++AC  
Sbjct: 292 DRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSY 346

Query: 271 YKNTEMG 277
             +  +G
Sbjct: 347 LGSKHLG 353


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/442 (47%), Positives = 290/442 (65%), Gaps = 3/442 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           V  Q +++     CG  + A K+FDEMP   R+ ++WN+ML  +A  G+  E L +F  M
Sbjct: 151 VFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM 210

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D   +  ++VSVL+AC   GAL  GR  HVY+E+  L     +  AL+D+Y+KCG++
Sbjct: 211 LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSV 270

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           N A   F  M   R V +WTS+I GLA NG G+++LELFSLM++  + P E+T V VL  
Sbjct: 271 NDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYA 330

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV++G  +FD M+ +YGI P +EH GC+VDL GRAGR++EA D I  MP++P+A 
Sbjct: 331 CSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAV 390

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL +C M+K  E+G++A  +LVEL+  + G YVLLSN+YA    W  V  +R+ M 
Sbjct: 391 VWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMV 450

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
              V+K PG S++E+   V+EF  GD +HP   +I  ML EI+ RL+  GY+  T+ V+ 
Sbjct: 451 KDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLA 510

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DIEEEEKE  L  HSE++AIAF L+    G+PIRI+KNLR+C DCH    +ISKV++REI
Sbjct: 511 DIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREI 570

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRDR+RFHHF+ G CSCK YW
Sbjct: 571 IVRDRSRFHHFQGGACSCKDYW 592



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 42/195 (21%)

Query: 21  PDVVCQTAMISAC-----------------------------------AKCGDVDLARKM 45
           PD     ++++AC                                   AKCG V+ AR++
Sbjct: 217 PDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRI 276

Query: 46  FDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           F+EM   R  ++W +++ G A  G  +EAL LF LM+   +   E++MV VL AC+H G 
Sbjct: 277 FEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGL 336

Query: 105 LDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVI 162
           +D G R+     E   +   +     +VD+  + G + +A D+   M  E N   W +++
Sbjct: 337 VDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLL 396

Query: 163 GGLAMNGAGEKSLEL 177
           G  AM+    K LEL
Sbjct: 397 GSCAMH----KKLEL 407



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 12/218 (5%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL---NEVSMVSVLSACTHLGALDQGR 109
           DP   N +L   A   + R AL      ++H  +L   +  +   ++ AC  L AL +G 
Sbjct: 83  DPFPLNTVLRIAAGSPRPRVAL------ELHRRRLALPDTHTYPPLIQACARLLALREGE 136

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
             H    +N     V +  +LV +Y  CG    A   F  M  + RN+ +W S++   A 
Sbjct: 137 CLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAA 196

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
           NG   + L +F  M      P+  T VSVL  C   G +  GR        + G+     
Sbjct: 197 NGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRR-VHVYVEKVGLVENSH 255

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               L+DLY + G +++A  +  +M +     +W +L+
Sbjct: 256 VSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLI 293


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/434 (45%), Positives = 285/434 (65%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++IS  A+ G +D ARK FD + E++ I++N ++  YA+   S EAL LF+ ++   +  
Sbjct: 416 SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S+LS    +G + +G   H  + ++ LK+  ++  AL+ MYS+CGN+  A   F
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M++RNV +WTS+I G A +G   ++LELF  M + GVRPNEVT+++VL  C  VGLV 
Sbjct: 536 EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVN 595

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG +HF SM  E+G+ P +EHY C+VD+ GR+G L EA+  IN MP K  A  W   L A
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR++ N E+G+ A++ ++E E  +  AY+LLSN+YA    WD V N+R+ MK K + K  
Sbjct: 656 CRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEA 715

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           GCS +EV+ +VH+F+ GD +HP+  EI   L  +S ++K  GYV N + V++D+EEE+KE
Sbjct: 716 GCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKE 775

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L +HSEK+A+AFGLIS  +  PIR+ KNLR+C DCH   K IS    REIIVRD NRF
Sbjct: 776 KLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRF 835

Query: 448 HHFKEGKCSCKGYW 461
           HH K+G+CSC  YW
Sbjct: 836 HHIKDGRCSCNEYW 849



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 14/238 (5%)

Query: 17  GIHEPDVVCQTAMISACAKC-GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           G  + DV     +I    K  GD+  A K+F++MPER+ + W  M+    Q G + EA+ 
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAID 257

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M     + +  ++  V+SAC ++  L  G+  H    R+ L +   +G  L++MY+
Sbjct: 258 LFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYA 317

Query: 136 KC---GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA-GEKSLELFSLMKQAGVRPNEV 191
           KC   G+M  A   F  + + NV++WT++I G    G   E++L+LF  M    V PN  
Sbjct: 318 KCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHF 377

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLDEA 245
           TF S L+ C  +  +  G + F      + ++       C    L+ +Y R+GR+D+A
Sbjct: 378 TFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 2/229 (0%)

Query: 25  CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFHLMQIH 83
           C   M + C+  G +  ARK+FD++ + +  +W AM+ GY Q  G   EAL LF  M + 
Sbjct: 311 CLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILT 370

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            V  N  +  S L AC +L AL  G     +  +        +  +L+ MY++ G ++ A
Sbjct: 371 HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  + E+N+ ++ +VI   A N   E++LELF+ ++  G+  +  TF S+L G   +
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASI 490

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           G + +G E   +   + G++        L+ +Y R G ++ A  V   M
Sbjct: 491 GTIGKG-EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D V   ++IS  +KCG  + A  +F  M   RD I+W+AM++ +A       AL  F  M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKC-G 138
             +    NE    +   AC+    +  G     + I+   L+  V +G  L+DM+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  M ERN  TWT +I  L   G   ++++LF  M  +G  P+  T   V+ 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVIS 279

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            C  + L+  G++ H  ++R    ++  +    CL+++Y +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVG--CCLINMYAK 318



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERN 154
           L  C    + D G   H  + ++ L++      +L+ +YSKCG   KA   F  M   R+
Sbjct: 73  LKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRD 132

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +W++++   A N  G ++L  F  M + G  PNE  F +  R C     V  G   F 
Sbjct: 133 LISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFG 192

Query: 215 SMRREYGIEPWLEHYGC-LVDLYGRA-GRLDEALDVINKMPMKPHAGAWGALLN 266
            + +   ++  +   GC L+D++ +  G L  A  V  KMP + +A  W  ++ 
Sbjct: 193 FVIKTGYLQSDV-CVGCGLIDMFVKGRGDLVSAFKVFEKMPER-NAVTWTLMIT 244


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/440 (46%), Positives = 282/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A++   AKCG+   A+++FD+M ER+   W  M++G AQ G   EA  LF  M 
Sbjct: 469 DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQML 528

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  +  + VS+LSAC   GAL+  +  H +     L   + +G ALV MY+KCG+++
Sbjct: 529 REGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVD 588

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M ER+VY+WT +IGGLA +G G  +L+LF  MK  G +PN  +FV+VL  C 
Sbjct: 589 DARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACS 648

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EGR  F S+ ++YGIEP +EHY C+VDL GRAG+L+EA   I  MP++P    W
Sbjct: 649 HAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPW 708

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL AC  Y N EM E A+++ ++L+ K+   YVLLSNIYA + NW++ + VR +M+ +
Sbjct: 709 GALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRR 768

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K PG S IEVD ++H F  GD +HP   EI   L ++ +RLK  GYV +T  V+ + 
Sbjct: 769 GIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNT 828

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           ++E KE  LC HSEK+AI +GL+      PIR+ KNLRVC DCH  TK ISKV  REI+ 
Sbjct: 829 DQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVA 888

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC  YW
Sbjct: 889 RDAKRFHHFKDGVCSCGDYW 908



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 155/307 (50%), Gaps = 19/307 (6%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  +TA+++   KCG +D A+ +FD+M ER+ I+W  M+ G A  G+ +EA H F  
Sbjct: 62  QSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQ 121

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ      N  + VS+L+A    GAL+  +  H +     L + + +G ALV MY+K G+
Sbjct: 122 MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGS 181

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F GM ER++++WT +IGGLA +G G+++  LF  M++ G  PN  T++S+L  
Sbjct: 182 IDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241

Query: 200 CCVVGL-----VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
             +        V+E  +H      + G    L     L+ +Y + G +D+A  V + M  
Sbjct: 242 SAITSTGALEWVKEVHKHAG----KAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCD 297

Query: 255 KPHAGAWGALL-----NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           +    +W A++     N C     T   ++     V   T     Y+ L N +  +  W+
Sbjct: 298 RD-VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDST----TYLSLLNTHVSTGAWE 352

Query: 310 RVINVRQ 316
            V  V +
Sbjct: 353 WVKEVHK 359



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 98/177 (55%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D+    A+I   AKCG +D AR +FD M +RD I+WNAM+ G AQ G   EA  +F  M
Sbjct: 267 SDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKM 326

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q      +  + +S+L+     GA +  +  H +     L   + +G+A V MY +CG++
Sbjct: 327 QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSI 386

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           + A   F  +  RNV TW ++IGG+A    G ++L LF  M++ G  P+  TFV++L
Sbjct: 387 DDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNIL 443



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 108/193 (55%), Gaps = 1/193 (0%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GYA+ G + +A+ ++  M+    + NE++ +S+L AC    +L  G+  H +I ++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  V + TALV+MY KCG+++ A   F  M ERNV +WT +IGGLA  G G+++   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++ G  PN  T+VS+L      G +E  +E   S     G+   L     LV +Y ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKE-VHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 240 GRLDEALDVINKM 252
           G +D+A  V + M
Sbjct: 180 GSIDDARVVFDGM 192



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 132/322 (40%), Gaps = 72/322 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPI----- 55
           MYA+ G +   + VFDG+ + DV+   AMI   A+ G    A  +F +M +   +     
Sbjct: 278 MYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTT 337

Query: 56  ------------AW----------------------NAMLAGYAQCGKSREALHLFHLMQ 81
                       AW                      +A +  Y +CG   +A  +F  + 
Sbjct: 338 YLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA 397

Query: 82  IHDVKL-------------------------------NEVSMVSVLSACTHLGALDQGRW 110
           + +V                                 +  + V++LSA     AL+  + 
Sbjct: 398 VRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKE 457

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
            H Y     L + + +G ALV MY+KCGN   A   F  M ERNV TWT +I GLA +G 
Sbjct: 458 VHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGC 516

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
           G ++  LF  M + G+ P+  T+VS+L  C   G +E  +E   S     G+   L    
Sbjct: 517 GHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKE-VHSHAVNAGLVSDLRVGN 575

Query: 231 CLVDLYGRAGRLDEALDVINKM 252
            LV +Y + G +D+A  V + M
Sbjct: 576 ALVHMYAKCGSVDDARRVFDDM 597


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/463 (46%), Positives = 296/463 (63%), Gaps = 7/463 (1%)

Query: 4   ELGCLGYC--QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
            L C+G      VF   +  D   Q A+I+  AK     +ARK+FDEMP+R  +AWN+M+
Sbjct: 122 SLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMI 181

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GY Q G + EA+ +F+ M+   V+ +  + VSVLSAC+ LG+LD G W H  I  + + 
Sbjct: 182 SGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGIT 241

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           M V L T+LV+M+S+CG++ +A   F+ M E NV  WT++I G  M+G G +++E+F  M
Sbjct: 242 MNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRM 301

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K  GV PN VTFV+VL  C   GL++EGR  F SM++EYG+ P +EH+ C+VD++GR G 
Sbjct: 302 KARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGL 361

Query: 242 LDEALDVI---NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           L+EA   +   N   + P    W A+L AC+M+KN ++G   +  L+  E +N G YVLL
Sbjct: 362 LNEAYQFVKGLNSDELVP--AVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLL 419

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SN+YA +   DRV +VR +M  +G+KK  G S I+VD   + F  GD++HP  NEI   L
Sbjct: 420 SNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFL 479

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+  R K AGY       M+++E EE+E  L  HSEK+A+AFGL+   +GV +RIVKNL
Sbjct: 480 DELIWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNL 539

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH   K IS V NREIIVRD+ RFHHF+EG CSC  YW
Sbjct: 540 RICEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/431 (47%), Positives = 291/431 (67%), Gaps = 1/431 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +TA+++  AKC D+ LA K+FDE+ +R+ +AW+ M++GYA+ G   EAL LF  MQ   V
Sbjct: 199 ETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGV 258

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             +EV+MVSV+SAC   GALD G+W H YI +  ++  + L TALV+MY+KCG + +A +
Sbjct: 259 VPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKE 318

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  ++   W+S+I GLA+NG  E +LE F  M++A V+PN VTF+ VL  C   GL
Sbjct: 319 VFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGL 378

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V EGR ++ SM  E+GI P +E YGC+VDL  RA  +++A  ++  MP+ P+   W  LL
Sbjct: 379 VSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 437

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
             C+  KN +  E+ +++L+ELE  N   Y+LLSN+YA    W+++  VR+ MK  G+K 
Sbjct: 438 VGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKA 497

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PGCS IEVD  VHEF  GD +HP   E+  +L +IS+R+   G+    + V++++ +EE
Sbjct: 498 VPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEE 557

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE+ LC+HSE++AIA+GL+  K  + IRIVKNLRVC DCH+VTK+IS  + REIIVRDR 
Sbjct: 558 KENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRV 617

Query: 446 RFHHFKEGKCS 456
           RFH F  G CS
Sbjct: 618 RFHKFVNGSCS 628



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 135/244 (55%), Gaps = 4/244 (1%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLFHLMQI 82
           +C+     A +  GD+D ARK+F ++   +  +WN+M+ G +Q    S+E + LF  M  
Sbjct: 94  LCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVR 153

Query: 83  HDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 N  +M  VL AC+ + AL++G+  H  + ++    +  + TALV+ Y+KC ++ 
Sbjct: 154 RGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIV 213

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +RN+  W+++I G A  G   ++L LF  M++AGV P+EVT VSV+  C 
Sbjct: 214 LASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACA 273

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G ++ G+     + ++  IE  LE    LV++Y + G ++ A +V + MP+K    AW
Sbjct: 274 ASGALDTGKWVHAYINKQL-IETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAW 331

Query: 262 GALL 265
            +++
Sbjct: 332 SSMI 335



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 57/90 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+   TA+++  AKCG ++ A+++FD MP +D  AW++M+ G A  G + +AL  F  
Sbjct: 294 ETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFR 353

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           M+   VK N V+ + VLSAC H G + +GR
Sbjct: 354 MEEAKVKPNHVTFIGVLSACAHSGLVSEGR 383


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 297/441 (67%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A+I   AK G +D ARK+F+ +P +D I+WN+++ GY+Q G + EA+ ++  M+
Sbjct: 376 DIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMR 435

Query: 82  IHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            +   + N+ + VS+L+A + LGAL QG  AH  + +N L   + + T LVDMY KCG +
Sbjct: 436 YYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKL 495

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A+  F+ +  ++  +W ++I    ++G G K+++LF  M+  GV+P+ +TFVS+L  C
Sbjct: 496 ADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSAC 555

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV+EG+  F  M+  YGI P L+HYGC+VDL+GRAG L++A + +  MP++P    
Sbjct: 556 SHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSV 615

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL ACR+++N E+    S  L+++E++N G YVLLSNIYA+  +W+ V  VR + + 
Sbjct: 616 WGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARD 675

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G+KK PG S IEVD+++  F+ G++THP+  EI   L  ++ ++K  GYV + N V+ D
Sbjct: 676 RGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQD 735

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +E++EKE+ L  HSE++A+AFG+IS      ++I KNLRVC DCH+ TK ISK+  REII
Sbjct: 736 VEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREII 795

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFHHFK+G CSC  YW
Sbjct: 796 VRDSNRFHHFKDGVCSCGDYW 816



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 144/312 (46%), Gaps = 23/312 (7%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    + I   ++ G V LA  +FD M  RD   WNAM++G+   GK  EAL +F  
Sbjct: 171 ECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDE 230

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V ++ V++ S+L  C  L  +  G   HVY  +  L+  + +  AL++MY+K G 
Sbjct: 231 MRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGE 290

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  MK R++ +W S++     N     +L +++ M   GV P+ +T VS+   
Sbjct: 291 LRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASV 350

Query: 200 CCVVGLVEEGREHFDSMRREYGIEP---WLEHY----GCLVDLYGRAGRLDEALDVINKM 252
              +G       +F S R  +G      W  H       ++D+Y + G +D A  V   +
Sbjct: 351 AAELG-------NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGL 403

Query: 253 PMKPHAGAWGALLNACRM--YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
           P+K    +W +L+         N  +   +S +       N G +V +   +++      
Sbjct: 404 PVKD-VISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQ------ 456

Query: 311 VINVRQIMKAKG 322
           +  ++Q MKA G
Sbjct: 457 LGALKQGMKAHG 468



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 122/250 (48%), Gaps = 14/250 (5%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQ 81
           +     +I+  A  GD+  AR  FD++  +D   WN+M++ YA+ G    A+  F+  + 
Sbjct: 75  IFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLS 134

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  +   V+ AC   G LD GR  H  + +   +  V +  + +  YS+ G ++
Sbjct: 135 TSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVS 191

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  M  R++ TW ++I G  +NG   ++LE+F  M+   V  + VT  S+L  C 
Sbjct: 192 LACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICV 251

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEH--YGC--LVDLYGRAGRLDEALDVINKMPMKPH 257
            +  +  G      +   Y I+  LE   + C  L+++Y + G L  A  + N+M ++  
Sbjct: 252 QLDDIISG-----VLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDI 306

Query: 258 AGAWGALLNA 267
             +W +LL A
Sbjct: 307 V-SWNSLLAA 315



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LM 181
           ++ L   L++ Y+  G++  A   F  ++ ++VYTW S+I   A  G    +++ F+  +
Sbjct: 74  SIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFL 133

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             + ++ +  TF  V+R C   G +++GR+    +  + G E  +      +  Y R G 
Sbjct: 134 STSFLQSDHYTFPPVIRAC---GNLDDGRK-VHCLVLKLGFECDVYIAASFIHFYSRFGF 189

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           +  A ++ + M ++   G W A+++    Y N ++ E
Sbjct: 190 VSLACNLFDNMMIRD-IGTWNAMISG--FYLNGKVAE 223


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/453 (43%), Positives = 302/453 (66%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  G++    +C T +I+  A+C D++ AR +FDEM +   +++NA++ GYA+  +
Sbjct: 153 HCFAVKLGLNHNIYICPT-LINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQ 211

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  +Q  +++  +V+M+SV+ +C  LGALD G+W H Y+++      V + TA
Sbjct: 212 PNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTA 271

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DM++KCG++  A+  F GM+ R+   W+++I   A +G G K++ +F  MK+ GVRP+
Sbjct: 272 LIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPD 331

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+TF+ +L  C   GLVE+GR +F SM + YGI P ++HYGC+VDL GRAG LDEA + +
Sbjct: 332 EITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFV 391

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           +K+ +K     W  LL+AC  + N EM +    ++ EL+  + G YV+LSN+YA    W+
Sbjct: 392 DKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWE 451

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V ++R++MK +GV K+PGCS +EV+  VHEFF+GD  H    E+   L E+ + +KL G
Sbjct: 452 DVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVG 511

Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV +T+ V + D+EEE KE  L  HSEK+A+AFGL++   G  IR+ KNLR+C DCH+  
Sbjct: 512 YVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAA 571

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+IS +F R+I++RD  RFH F++GKCSC  +W
Sbjct: 572 KLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 131/251 (52%), Gaps = 5/251 (1%)

Query: 20  EPDVVCQTAMISACA---KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           + D+   T +I+ C        +D A  +FD++ ++D I +N M  GYA+      A  L
Sbjct: 58  QSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSL 117

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  +    +  ++ +  S+L AC    AL +G   H +  +  L   + +   L++MY++
Sbjct: 118 FGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAE 177

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C +MN A   F  M++  + ++ ++I G A +    ++L LF  ++ + + P +VT +SV
Sbjct: 178 CNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSV 237

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           +  C ++G ++ G+   + ++++ G + +++    L+D++ + G L +A+ +   M ++ 
Sbjct: 238 IMSCALLGALDLGKWIHEYVKKK-GFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVR- 295

Query: 257 HAGAWGALLNA 267
              AW A++ A
Sbjct: 296 DTQAWSAMIVA 306



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 39/177 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+A+ G L     +F+G+   D    +AMI A A  GD   A  MF+EM           
Sbjct: 275 MFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEM----------- 323

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                     RE            V+ +E++ + +L AC+H G ++QGR    Y      
Sbjct: 324 ---------KREG-----------VRPDEITFLGLLYACSHAGLVEQGRG---YFYSMSK 360

Query: 121 KMTVTLGT----ALVDMYSKCGNMNKAMDFFWGMKERNV-YTWTSVIGGLAMNGAGE 172
              +T G      +VD+  + G++++A +F   ++ +     W +++   + +G  E
Sbjct: 361 TYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVE 417


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 293/463 (63%), Gaps = 4/463 (0%)

Query: 3   AELGCLGYCQKV----FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A  G L + ++V     D   E DV   TA++   AK G +D AR +FD M  RD ++WN
Sbjct: 241 ASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWN 300

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
            M+  +A+ G+  EA  LF  MQ    K + +  +S+L+AC   GAL+  +  H +   +
Sbjct: 301 VMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDS 360

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L++ V +GTALV MYSK G+++ A   F  MK RNV +W ++I GLA +G G+ +LE+F
Sbjct: 361 GLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVF 420

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M   GV+P+ VTFV+VL  C   GLV+EGR  + +M + YGIEP + H  C+VDL GR
Sbjct: 421 RRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGR 480

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL EA   I+ M + P    WGALL +CR Y N E+GEL +++ ++L+ KN   YVLL
Sbjct: 481 AGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLL 540

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYAE+  WD V  VR +M+ +G++K PG S IEVD ++H+F   D +HP   EI    
Sbjct: 541 SNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESK 600

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            ++  ++K  GY+ +T  V+ +   ++KE  +C HSEK+AI +GL+    G PIR+ KNL
Sbjct: 601 DKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNL 660

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH  TK+ISKV  REIIVRD NRFHHFK+G CSC  YW
Sbjct: 661 RVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 141/248 (56%), Gaps = 4/248 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV   TA++    KCG ++ AR++FD +   D I+W  M+  YAQ G  +EA  L   
Sbjct: 161 ESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQ 220

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+    K N ++ VS+L+AC   GAL   +  H +     L++ V +GTALV MY+K G+
Sbjct: 221 MEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGS 280

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  MK R+V +W  +IG  A +G G ++ +LF  M+  G +P+ + F+S+L  
Sbjct: 281 IDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNA 340

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C   G +E  ++ H  ++  + G+E  +     LV +Y ++G +D+A  V ++M ++ + 
Sbjct: 341 CASAGALEWVKKIHRHAL--DSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NV 397

Query: 259 GAWGALLN 266
            +W A+++
Sbjct: 398 VSWNAMIS 405



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 131/234 (55%), Gaps = 4/234 (1%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
           +CG +  AR +FD + ++   +WNAM+AGY +   + +A+ LF  M    V+ N  + + 
Sbjct: 75  ECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMI 134

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L AC  L AL  G+  H  I    L+  V +GTAL+ MY KCG++N+A   F  +   +
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHD 194

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE-EGREHF 213
           + +WT +IG  A +G G+++  L   M+Q G +PN +T+VS+L  C   G ++   R H 
Sbjct: 195 IISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHR 254

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            ++  + G+E  +     LV +Y ++G +D+A  V ++M ++    +W  ++ A
Sbjct: 255 HAL--DAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRD-VVSWNVMIGA 305



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 98/198 (49%), Gaps = 5/198 (2%)

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           V VL  C     L   +  H  I ++R++    +   L+ +Y +CG + +A   F  + +
Sbjct: 32  VEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVK 91

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           ++  +W ++I G   +   E ++ LF  M   GV+PN  T++ +L+ C  +  ++ G+E 
Sbjct: 92  KSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE- 150

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
             +  R  G+E  +     L+ +YG+ G ++EA  + + + M     +W  ++ A   Y 
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL-MNHDIISWTVMIGA---YA 206

Query: 273 NTEMGELASRKLVELETK 290
            +  G+ A R ++++E +
Sbjct: 207 QSGNGKEAYRLMLQMEQE 224


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/502 (42%), Positives = 297/502 (59%), Gaps = 45/502 (8%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVD-------------------- 40
           MY + GCL    +V D +   DVV   ++++ CA+ G  D                    
Sbjct: 181 MYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT 240

Query: 41  -----------------LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
                              ++MF ++  +  ++WN M+A Y       EA+ +F  M+ H
Sbjct: 241 MASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDH 300

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            V  + +S+ SVL AC  L AL  GR  H Y+ R RL+  + L  AL+DMY+KCG +  A
Sbjct: 301 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 360

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
            + F  MK R+V +WTS+I    MNG G  ++ LFS M+  G+ P+ + FVSVL  C   
Sbjct: 361 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 420

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GL++EGR +F  M  E  I P +EH+ C+VDL GRAG++DEA   I +MPM+P+   WGA
Sbjct: 421 GLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGA 480

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL+ACR+Y N  +G LA+ +L +L  +  G YVLLSNIYA++  W+ V  VR IMK KG+
Sbjct: 481 LLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI 540

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           KK+PG S  E+D  VH F AGD++HP+    Y E++V +G    ++K AGYV  T+  ++
Sbjct: 541 KKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVG----KMKEAGYVPETDSALH 596

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEE+KE  L  HSEK+AIAF +++   G PIRI KNLRVC DCH   K+ISK+  REI
Sbjct: 597 DVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREI 656

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            +RD NRFHHF  G CSC  YW
Sbjct: 657 TIRDTNRFHHFYNGVCSCGDYW 678



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++ A A CG+    R +FDE+P+++ + +N M+  Y       +AL +F  M  H +  +
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             +   VL A +    L  G   H  + R  L + V +G  L+ MY KCG + +A     
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL--V 206
            M  R+V +W S++ G A NG  + +LE+   M+  G++P+  T  S+L       L  V
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGA 263
              +E F  +  +      L  +  ++ +Y       EA+D+  +M    + P A +  +
Sbjct: 257 SFVKEMFMKLANKS-----LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311

Query: 264 LLNAC 268
           +L AC
Sbjct: 312 VLPAC 316



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 118/249 (47%), Gaps = 35/249 (14%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V     +IS   KCG +  A ++ D+MP RD ++WN+++AG A+ G+  +AL +   M+
Sbjct: 171 NVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 230

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +K +  +M S+L A T+   LD                                N++
Sbjct: 231 LLGLKPDAGTMASLLPAVTN-TCLD--------------------------------NVS 257

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
              + F  +  +++ +W  +I     N    +++++F  M+   V P+ ++  SVL  C 
Sbjct: 258 FVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACG 317

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +  +  GR   + + R+  ++P L     L+D+Y + G L+ A +V ++M  +    +W
Sbjct: 318 DLSALLLGRRIHEYVVRKR-LQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSW 375

Query: 262 GALLNACRM 270
            ++++A  M
Sbjct: 376 TSMISAYGM 384



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
           +LG  L+  Y+ CG        F  + ++NV  +  +I     N     +L +F  M   
Sbjct: 72  SLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGH 131

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G+ P+  T+  VL+       +  G +   ++ R  G++  +     L+ +YG+ G L E
Sbjct: 132 GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVR-VGLDLNVFVGNGLISMYGKCGCLVE 190

Query: 245 ALDVINKMPMKPHAGAWGALLNAC 268
           A  V+++MP +    +W +L+  C
Sbjct: 191 ACRVLDQMPCR-DVVSWNSLVAGC 213


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/434 (45%), Positives = 285/434 (65%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++IS  A+ G +D ARK FD + E++ I++N ++  YA+   S EAL LF+ ++   +  
Sbjct: 416 SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S+LS    +G + +G   H  + ++ LK+  ++  AL+ MYS+CGN+  A   F
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M++RNV +WTS+I G A +G   ++LELF  M + GVRPN VT+++VL  C  VGLV 
Sbjct: 536 EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVN 595

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG +HF SM  E+G+ P +EHY C+VD+ GR+G L EA+  IN MP K  A  W   L A
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR++ N E+G+ A++ ++E E  +  AY+LLSN+YA +  WD V N+R+ MK K + K  
Sbjct: 656 CRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEA 715

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           GCS +EV+ +VH+F+ GD +HP+  EI   L  +S ++K  GYV N + V++D+EEE+KE
Sbjct: 716 GCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKE 775

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L +HSEK+A+AFGLIS  +  PIR+ KNLR+C DCH   K IS    REIIVRD NRF
Sbjct: 776 KLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRF 835

Query: 448 HHFKEGKCSCKGYW 461
           HH K+G+CSC  YW
Sbjct: 836 HHIKDGRCSCNEYW 849



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 14/238 (5%)

Query: 17  GIHEPDVVCQTAMISACAKC-GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           G  + DV     +I    K  GD+  A K+F++MPER+ + W  M+    Q G + EA+ 
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAID 257

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M +   + +  ++  V+SAC ++  L  G+  H    R+ L +   +G  L++MY+
Sbjct: 258 LFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYA 317

Query: 136 KC---GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA-GEKSLELFSLMKQAGVRPNEV 191
           KC   G+M  A   F  + + NV++WT++I G    G   E++L+LF  M    V PN  
Sbjct: 318 KCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHF 377

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLDEA 245
           TF S L+ C  +  +  G + F      + ++       C    L+ +Y R+GR+D+A
Sbjct: 378 TFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 2/229 (0%)

Query: 25  CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFHLMQIH 83
           C   M + C+  G +  ARK+FD++ + +  +W AM+ GY Q  G   EAL LF  M + 
Sbjct: 311 CLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILT 370

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            V  N  +  S L AC +L AL  G     +  +        +  +L+ MY++ G ++ A
Sbjct: 371 HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  + E+N+ ++ +VI   A N   E++LELF+ ++  G+  +  TF S+L G   +
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASI 490

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           G + +G E   +   + G++        L+ +Y R G ++ A  V   M
Sbjct: 491 GTIGKG-EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D V   ++IS  +KCG  + A  +F  M   RD I+W+AM++ +A       AL  F  M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKC-G 138
             +    NE    +   AC+    +  G     ++ +   L+  V +G  L+DM+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  M ERN  TWT +I  L   G   ++++LF  M  +G  P+  T   V+ 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVIS 279

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            C  + L+  G++ H  ++R    ++  +    CL+++Y +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVG--CCLINMYAK 318



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERN 154
           L  C    + D G   H  + ++ L++      +L+ +YSKCG   KA   F  M   R+
Sbjct: 73  LKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRD 132

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +W++++   A N  G ++L  F  M + G  PNE  F +  R C     V  G   F 
Sbjct: 133 LISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFG 192

Query: 215 SMRREYGIEPWLEHYGC-LVDLYGRA-GRLDEALDVINKMPMKPHAGAWGALLN 266
            + +   ++  +   GC L+D++ +  G L  A  V  KMP + +A  W  ++ 
Sbjct: 193 FVVKTGYLQSDV-CVGCGLIDMFVKGRGDLVSAFKVFEKMPER-NAVTWTLMIT 244


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/461 (44%), Positives = 300/461 (65%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G L    ++F+ +    VV   AMI    + G+V  AR++FD+M E+D   W+AM+
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMI 384

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y + G   +AL LF +MQ   ++ N  S++SVLS C  L  LD GR  H  + R++  
Sbjct: 385 KVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD 444

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + V + + L+ MY KCGN+ KA   F     ++V  W S+I G A +G G ++L +F  M
Sbjct: 445 LDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDM 504

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +G+ P++VTFV VL  C   G V++G E F+SM  +Y +E  +EHY C+VDL GRAG+
Sbjct: 505 HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGK 564

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA+D+I KMPM+  A  WGALL ACR +   ++ E+A++KL+ LE KN G ++LLSNI
Sbjct: 565 LNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNI 624

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET-HPRYNEIEVMLGE 360
           YA    WD V  +R+ M+ + V K PGCS I V+++VH+F  GD + HP ++EI  +L  
Sbjct: 625 YASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEW 684

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +S  L+ AGY  + + V++D++EEEK  +L  HSEK+A+A+GL+ +  G+PIR++KNLRV
Sbjct: 685 LSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRV 744

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+KV  REII+RD NRFHHFK+G CSC+ YW
Sbjct: 745 CGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 178/387 (45%), Gaps = 57/387 (14%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           ++ + ++I+  ++ G ++ AR +FDEM +++ I+WN+++AGY Q  + +EA ++F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVDMYSKCGNMN 141
              + N +S   ++S   + G +++ R     + ERN     V   TA+V  Y K G ++
Sbjct: 157 ---ERNTISWNGLVSGYINNGMINEAREVFDRMPERN-----VVSWTAMVRGYVKEGMIS 208

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   FW M E+NV +WT ++GGL   G  +++  LF +M +  V    VT  +++ G C
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYC 264

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLE---------------------------HYGCLVD 234
            VG + E R  FD M R   +  W                              +  ++ 
Sbjct: 265 QVGRLVEARMLFDEMPRR-NVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLK 323

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
            Y   GRLDEA ++ N MP+K        +L  C   +N E+ + A +   ++  K+ G 
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMIL--C-FGQNGEVPK-ARQVFDQMREKDEGT 379

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVK-KLPG-CSVIEVDREVHEFFAGDETHPRYN 352
           +  +  +Y         + + ++M+ +G++   P   SV+ V   +     G E H +  
Sbjct: 380 WSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL- 438

Query: 353 EIEVMLGEISRRLKLAGYVANTNPVMY 379
                   +  +  L  YVA+    MY
Sbjct: 439 --------VRSQFDLDVYVASVLLSMY 457



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 24/258 (9%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            Q +FD + E + +    ++S     G ++ AR++FD MPER+ ++W AM+ GY + G  
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMI 207

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTA 129
            EA  LF  M   +V    VS   +L      G +D+  R   +  E++     V   T 
Sbjct: 208 SEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLFDMMPEKD-----VVTRTN 258

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           ++  Y + G + +A   F  M  RNV +WT++I G   N   + + +LF +M +     N
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KN 314

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALD 247
           EV++ ++L+G    G ++E  E F++M       P      C  ++  +G+ G + +A  
Sbjct: 315 EVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQ 367

Query: 248 VINKMPMKPHAGAWGALL 265
           V ++M  K   G W A++
Sbjct: 368 VFDQMREKDE-GTWSAMI 384



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 140/313 (44%), Gaps = 65/313 (20%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   ++VFD + E +VV  TAM+    K G +  A  +F +MPE++ ++W  ML
Sbjct: 170 YINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVML 229

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR------------ 109
            G  Q G+  EA  LF +M   DV    V+  +++     +G L + R            
Sbjct: 230 GGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMPRRNVV 285

Query: 110 -WAHV---YIERNRLKMTVTLG-----------TALVDMYSKCGNMNKAMDFFWGM---- 150
            W  +   Y++  ++ +   L            TA++  Y+ CG +++A + F  M    
Sbjct: 286 SWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKS 345

Query: 151 ------------------KERNVY---------TWTSVIGGLAMNGAGEKSLELFSLMKQ 183
                             K R V+         TW+++I      G    +LELF +M++
Sbjct: 346 VVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQR 405

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            G+RPN  + +SVL  C  +  ++ GRE H   +R ++ ++ ++     L+ +Y + G L
Sbjct: 406 EGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA--SVLLSMYIKCGNL 463

Query: 243 DEALDVINKMPMK 255
            +A  V ++  +K
Sbjct: 464 AKAKQVFDRFAVK 476


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/461 (44%), Positives = 300/461 (65%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G L    ++F+ +    VV   AMI    + G+V  AR++FD+M E+D   W+AM+
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMI 384

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y + G   +AL LF +MQ   ++ N  S++SVLS C  L  LD GR  H  + R++  
Sbjct: 385 KVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD 444

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + V + + L+ MY KCGN+ KA   F     ++V  W S+I G A +G G ++L +F  M
Sbjct: 445 LDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDM 504

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +G+ P++VTFV VL  C   G V++G E F+SM  +Y +E  +EHY C+VDL GRAG+
Sbjct: 505 HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGK 564

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA+D+I KMPM+  A  WGALL ACR +   ++ E+A++KL+ LE KN G ++LLSNI
Sbjct: 565 LNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNI 624

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET-HPRYNEIEVMLGE 360
           YA    WD V  +R+ M+ + V K PGCS I V+++VH+F  GD + HP ++EI  +L  
Sbjct: 625 YASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEW 684

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +S  L+ AGY  + + V++D++EEEK  +L  HSEK+A+A+GL+ +  G+PIR++KNLRV
Sbjct: 685 LSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRV 744

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+KV  REII+RD NRFHHFK+G CSC+ YW
Sbjct: 745 CGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 178/387 (45%), Gaps = 57/387 (14%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           ++ + ++I+  ++ G ++ AR +FDEM +++ I+WN+++AGY Q  + +EA ++F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVDMYSKCGNMN 141
              + N +S   ++S   + G +++ R     + ERN     V   TA+V  Y K G ++
Sbjct: 157 ---ERNTISWNGLVSGYINNGMINEAREVFDRMPERN-----VVSWTAMVRGYVKEGMIS 208

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   FW M E+NV +WT ++GGL   G  +++  LF +M +  V    VT  +++ G C
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYC 264

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLE---------------------------HYGCLVD 234
            VG + E R  FD M R   +  W                              +  ++ 
Sbjct: 265 QVGRLVEARMLFDEMPRR-NVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLK 323

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
            Y   GRLDEA ++ N MP+K        +L  C   +N E+ + A +   ++  K+ G 
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMIL--C-FGQNGEVPK-ARQVFDQMREKDEGT 379

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVK-KLPG-CSVIEVDREVHEFFAGDETHPRYN 352
           +  +  +Y         + + ++M+ +G++   P   SV+ V   +     G E H +  
Sbjct: 380 WSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL- 438

Query: 353 EIEVMLGEISRRLKLAGYVANTNPVMY 379
                   +  +  L  YVA+    MY
Sbjct: 439 --------VRSQFDLDVYVASVLLSMY 457



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 24/258 (9%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            Q +FD + E + +    ++S     G ++ AR++FD MPER+ ++W AM+ GY + G  
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMI 207

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTA 129
            EA  LF  M   +V    VS   +L      G +D+  R   +  E++     V   T 
Sbjct: 208 SEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLFDMMPEKD-----VVTRTN 258

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           ++  Y + G + +A   F  M  RNV +WT++I G   N   + + +LF +M +     N
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KN 314

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALD 247
           EV++ ++L+G    G ++E  E F++M       P      C  ++  +G+ G + +A  
Sbjct: 315 EVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQ 367

Query: 248 VINKMPMKPHAGAWGALL 265
           V ++M  K   G W A++
Sbjct: 368 VFDQMREKDE-GTWSAMI 384



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 140/313 (44%), Gaps = 65/313 (20%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   ++VFD + E +VV  TAM+    K G +  A  +F +MPE++ ++W  ML
Sbjct: 170 YINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVML 229

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR------------ 109
            G  Q G+  EA  LF +M   DV    V+  +++     +G L + R            
Sbjct: 230 GGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMPRRNVV 285

Query: 110 -WAHV---YIERNRLKMTVTL-----------GTALVDMYSKCGNMNKAMDFFWGM---- 150
            W  +   Y++  ++ +   L            TA++  Y+ CG +++A + F  M    
Sbjct: 286 SWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKS 345

Query: 151 ------------------KERNVY---------TWTSVIGGLAMNGAGEKSLELFSLMKQ 183
                             K R V+         TW+++I      G    +LELF +M++
Sbjct: 346 VVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQR 405

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            G+RPN  + +SVL  C  +  ++ GRE H   +R ++ ++ ++     L+ +Y + G L
Sbjct: 406 EGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA--SVLLSMYIKCGNL 463

Query: 243 DEALDVINKMPMK 255
            +A  V ++  +K
Sbjct: 464 AKAKQVFDRFAVK 476


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/463 (44%), Positives = 304/463 (65%), Gaps = 6/463 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG   +C+ + +G    D+    A+I     CG    A  +FDE   RD + WN M+  
Sbjct: 128 KLGRRFHCEVLKNGFGS-DLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA 186

Query: 64  YAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY---IERNR 119
           +   G S +A  L   M ++ +++ +EV+MVS++ AC  LG L++G++ H Y   +++  
Sbjct: 187 HLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFE 246

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +   + L TALVDMY+KCG+++ A+  F  M+ RNV+TW ++IGGLAM+G GE ++ LF 
Sbjct: 247 INCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFD 306

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+   + P++VTF+++L  C   GLV+EG   F +M+ ++ IEP +EHYGC+VDL  RA
Sbjct: 307 QMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRA 366

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
            ++D+AL  I  MP+K ++  W  LL ACR   + ++ E   R+++ELE  + G YV+LS
Sbjct: 367 RKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLS 426

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA    WD  + +R+ MK KG++K PGCS IE++  +H+F AGD +H +  +I  M+ 
Sbjct: 427 NLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIE 486

Query: 360 EISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           E++RR+ L  G+V  T  V++DIEEEEKE +L  HSEK+AIA GLIS   G PIRIVKNL
Sbjct: 487 EMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNL 546

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH   K+ SKV+NREI+ RDR+RFHHFKEG CSC  +W
Sbjct: 547 RVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 4/261 (1%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           +H P    +     A +  GD++ ARK+F +M   DP   N M+ GYA+     EA+ L+
Sbjct: 40  LHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLY 99

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           + M    V ++  +   VL+AC  LGA+  GR  H  + +N     + +  AL+  Y  C
Sbjct: 100 YFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNC 159

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSV 196
           G+   A D F     R+V TW  +I      G  EK+ +L   M K   +RP+EVT VS+
Sbjct: 160 GSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSL 219

Query: 197 LRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +  C  +G +E G+    +     ++ I   L     LVD+Y + G +D AL V  +M +
Sbjct: 220 VPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 279

Query: 255 KPHAGAWGALLNACRMYKNTE 275
           + +   W AL+    M+ + E
Sbjct: 280 R-NVFTWNALIGGLAMHGHGE 299


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/450 (44%), Positives = 298/450 (66%), Gaps = 2/450 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +F   +E  +   ++++   AK G +  AR +F+ +PERD ++  A+++GYAQ G   EA
Sbjct: 137 IFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 196

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L LF  +Q   +  N V+  S+L+A + L ALD G+  H ++ R  L   V L  +L+DM
Sbjct: 197 LELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDM 256

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVT 192
           YSKCGN+N A   F  M  R V +W +++ G + +G G + ++LF LM++   V+P+ VT
Sbjct: 257 YSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVT 316

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYG-IEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           F++VL GC   GL ++G E FD M      IE  +EHYGC++DL GRAGR++EA ++I K
Sbjct: 317 FLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKK 376

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP +P A  WG+LL ACR++ NT +GE    +L+E+E +N G YV+LSN+YA +  W+ V
Sbjct: 377 MPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDV 436

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
            NVR++M  K V K PG S IE+D+ +H F+A D +HPR  E+ + + E+  + K +GYV
Sbjct: 437 RNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYV 496

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            + + V+YD++EE+KE  L  HSEK+A+AFGLIS  EGVP+R++KNLR+C DCH+  K +
Sbjct: 497 PDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFV 556

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SKV+ R++ +RD+NRFHH   G CSC  YW
Sbjct: 557 SKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 142/246 (57%), Gaps = 4/246 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P V   T +I    KC  +  AR +FDEM ER+ ++W AM++GY+Q G + EALHLF  M
Sbjct: 43  PPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQM 102

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D + NE +  +VLS+CT     + GR  H +I +   +  + +G++L+DMY+K G +
Sbjct: 103 LRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRI 162

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           ++A   F  + ER+V + T++I G A  G  E++LELF  +++ G+  N VT+ S+L   
Sbjct: 163 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTAL 222

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             +  ++ G++ H   +R E      L++   L+D+Y + G L+ A  + N MP++    
Sbjct: 223 SGLAALDHGKQVHSHVLRCELPFYVVLQN--SLIDMYSKCGNLNYARKIFNNMPVRT-VI 279

Query: 260 AWGALL 265
           +W A+L
Sbjct: 280 SWNAML 285



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +Q  ++K +  +M+  L+ C +  A+ +G+  H ++ +      V L T L+ +Y+KC  
Sbjct: 3   IQGPEIKFDGYNML--LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M+ERNV +WT++I G +  G   ++L LF  M ++   PNE TF +VL  
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C      E GR+ H    +R Y  E  +     L+D+Y +AGR+ EA  V   +P +   
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNY--ENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVV 178

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
                +    ++  + E  EL  R   E  + N+  Y  L
Sbjct: 179 SCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASL 218


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/437 (46%), Positives = 294/437 (67%), Gaps = 2/437 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           QT +++  AKC  V LAR +FD M  +++ +AW+AM++GY++ G   EAL LF  MQ   
Sbjct: 213 QTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVG 272

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V+ +EV+MVSV+SAC   GALD G+W H YI+R  + + + L TAL+DMY+KCG + +A 
Sbjct: 273 VEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERAR 332

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M E++   W+++I G A++G  E +L LFS M +  VRPN VTF+ VL  C   G
Sbjct: 333 GVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSG 392

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           LVE+GR ++ S+ +  GI+P +E+YGC+VDL  R+G LD+A   +  MP+ P++  W  L
Sbjct: 393 LVEDGRRYW-SIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTL 451

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+     ++ E A+++L+ELE  N   YVLLSN+YA +  WDRV  +R+ MK K V 
Sbjct: 452 LVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVT 511

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
            + G S IE++  +HEF   D++HP   EI ++L E++ R++ AG+   T  V++D+ EE
Sbjct: 512 AIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEE 571

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  LC+HSE++AIA+GL+  +    IR+VKNLR C DCH+V K+ISK +NREI+VRDR
Sbjct: 572 EKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDR 631

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFH F  G CSCK +W
Sbjct: 632 VRFHKFMGGSCSCKDFW 648



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTH 101
           R +FD++P+     +N+++      G S  AL ++  +++    + N  ++   L AC  
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTS 160
           + A  +GR  H    R  L  +  + T L+++Y+KC  +  A   F GM  ++N+  W++
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           ++ G +  G   ++L LF  M+  GV P+EVT VSV+  C   G ++ G+     + R+ 
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK- 306

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           GI   LE    L+D+Y + G ++ A  V + M ++    AW A++
Sbjct: 307 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMI 350



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 1/142 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   TA+I   AKCG ++ AR +FD M E+D  AW+AM+ G+A  G   +AL LF  M 
Sbjct: 311 DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML 370

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N V+ + VLSAC H G ++ GR     ++   +K ++     +VD+  + G ++
Sbjct: 371 ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 430

Query: 142 KAMDFFWGMK-ERNVYTWTSVI 162
            A  F  GM    N   W +++
Sbjct: 431 DAYSFVIGMPVSPNSVIWRTLL 452


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/442 (46%), Positives = 291/442 (65%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T M+    K G  D AR +FD MPER+ ++WNAM++GY +  +  +AL +F  M+
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N     + + ACT  GAL +GR  H ++E++ ++M   L TA+VDMY KCG + 
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283

Query: 142 KAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +A   F  +    + + TW  +IGG A++G G+ +L+LF  M++ GV P++VT V+VL  
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTA 343

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G++ EGR +F+ + + YGIEP +EHYGC+VDLYGRAGRL+EA  VI  MPM+P  G
Sbjct: 344 CAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVG 403

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
             GAL  A +++ + ++GE    +++EL+ +N G YVLL+N+ A +  W+ V  VR++M 
Sbjct: 404 VLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMD 463

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            + V K  G SVIEV  EV EF  G   HPR  E+  M  ++ R+++  GYV +T  V++
Sbjct: 464 ERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLH 523

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            I EEEKE  L  HSEK+AIAFGL+  + G  +RI KNLRVC DCH+ TK +S+VF R+I
Sbjct: 524 AIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQI 583

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRDRNRFHHFK+G+CSCK YW
Sbjct: 584 VVRDRNRFHHFKDGQCSCKDYW 605


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/463 (44%), Positives = 301/463 (65%), Gaps = 3/463 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y+  G L   +KVFD   E D++    ++   A+  D    R+ F +MP RD ++WN ++
Sbjct: 120 YSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTVI 179

Query: 62  AGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           A     G+  EA+ +F  ++  ++ + + V++VSV+SA  +LGAL QG WAH Y+ R  +
Sbjct: 180 AWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEI 239

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           ++   L +AL++MYSKCG +  A+  F      R+V TW +++ G   +G  E++LELF+
Sbjct: 240 EVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALELFT 299

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+ +G  PN++TF ++L  C   G VEEG  +F+ M     IEP + HYGC+VDL+ RA
Sbjct: 300 RMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRA 359

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G  ++A ++I  MPM+P A  W AL+ ACR Y N E+G+ A  +L+E    +H  YVLLS
Sbjct: 360 GLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLLS 419

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA   NW  V  VR++M   GV+K+PG S IE+D  +HEF +GD++H R  ++  ML 
Sbjct: 420 NIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVYEMLS 479

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI ++LK+AGY  +T+ V+ DI++E+ KE +L  HSE++A+AFGLIS   G PIRIVKNL
Sbjct: 480 EICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRIVKNL 539

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH+  K++SK++ R I+VRD NRFH F+EG CSC  YW
Sbjct: 540 RVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/437 (46%), Positives = 294/437 (67%), Gaps = 2/437 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           QT +++  AKC  V LAR +FD M  +++ +AW+AM++GY++ G   EAL LF  MQ   
Sbjct: 164 QTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVG 223

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V+ +EV+MVSV+SAC   GALD G+W H YI+R  + + + L TAL+DMY+KCG + +A 
Sbjct: 224 VEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERAR 283

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M E++   W+++I G A++G  E +L LFS M +  VRPN VTF+ VL  C   G
Sbjct: 284 GVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSG 343

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           LVE+GR ++ S+ +  GI+P +E+YGC+VDL  R+G LD+A   +  MP+ P++  W  L
Sbjct: 344 LVEDGRRYW-SIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTL 402

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+     ++ E A+++L+ELE  N   YVLLSN+YA +  WDRV  +R+ MK K V 
Sbjct: 403 LVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVT 462

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
            + G S IE++  +HEF   D++HP   EI ++L E++ R++ AG+   T  V++D+ EE
Sbjct: 463 AIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEE 522

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  LC+HSE++AIA+GL+  +    IR+VKNLR C DCH+V K+ISK +NREI+VRDR
Sbjct: 523 EKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDR 582

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFH F  G CSCK +W
Sbjct: 583 VRFHKFMGGSCSCKDFW 599



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTH 101
           R +FD++P+     +N+++      G S  AL ++  +++    + N  ++   L AC  
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTS 160
           + A  +GR  H    R  L  +  + T L+++Y+KC  +  A   F GM  ++N+  W++
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           ++ G +  G   ++L LF  M+  GV P+EVT VSV+  C   G ++ G+     + R+ 
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK- 257

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           GI   LE    L+D+Y + G ++ A  V + M ++    AW A++
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMI 301



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 1/142 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   TA+I   AKCG ++ AR +FD M E+D  AW+AM+ G+A  G   +AL LF  M 
Sbjct: 262 DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML 321

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N V+ + VLSAC H G ++ GR     ++   +K ++     +VD+  + G ++
Sbjct: 322 ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 381

Query: 142 KAMDFFWGMK-ERNVYTWTSVI 162
            A  F  GM    N   W +++
Sbjct: 382 DAYSFVIGMPVSPNSVIWRTLL 403


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/429 (47%), Positives = 288/429 (67%), Gaps = 2/429 (0%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ-IHDVKLNEVSM 92
           AK G +D A K+F+ +P +D I+WN ++ GYAQ G + EA+ ++ +M+   ++  N+ + 
Sbjct: 231 AKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTW 290

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           VS+L A  H+GAL QG   H  + +  L + V + T L+D+Y KCG +  AM  F+ + +
Sbjct: 291 VSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ 350

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
            +  TW ++I    ++G  EK+L+LF  M   GV+P+ VTFVS+L  C   G VEEG+  
Sbjct: 351 ESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWC 410

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
           F  M+ EYGI+P L+HYGC+VDL GRAG L+ A D I  MP++P A  WGALL ACR++ 
Sbjct: 411 FRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHG 469

Query: 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVI 332
           N E+G+ AS +L E+++KN G YVLLSNIYA    W+ V  VR + + +G+KK PG S I
Sbjct: 470 NIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTI 529

Query: 333 EVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCK 392
           EV+R+V  F+ G+++HP+  EI   L  ++ ++K  GY+ + + V+ D+EE+EKE  L  
Sbjct: 530 EVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTS 589

Query: 393 HSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
           HSE++AIAFG+IS     PIRI KNLRVC DCH+ TK IS++  REI+VRD NRFHHFK+
Sbjct: 590 HSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKD 649

Query: 453 GKCSCKGYW 461
           G CSC  YW
Sbjct: 650 GICSCGDYW 658



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 128/254 (50%), Gaps = 17/254 (6%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQ 81
           +   T +++  A  GDV L+R  FD++P++D  AWN+M++ Y   G   EA+  F+ L+ 
Sbjct: 51  IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLL 110

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           + +++ +  +   VL AC   G L  GR  H +  +   +  V +  +L+ MYS+ G   
Sbjct: 111 VSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 167

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC- 200
            A   F  M  R++ +W ++I GL  NG   ++L++   M+  G++ N VT VS+L    
Sbjct: 168 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFV 227

Query: 201 ---CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----P 253
                +GL++   + F+ +  +  I      +  L+  Y + G   EA++V   M     
Sbjct: 228 DMYAKLGLLDSAHKVFEIIPVKDVIS-----WNTLITGYAQNGLASEAIEVYKMMEECKE 282

Query: 254 MKPHAGAWGALLNA 267
           + P+ G W ++L A
Sbjct: 283 IIPNQGTWVSILPA 296



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 7/227 (3%)

Query: 2   YAELGCLGYCQKVFDGIHEP----DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           YA +G L    K+   + +     DV   T +I    KCG +  A  +F ++P+   + W
Sbjct: 297 YAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTW 356

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           NA+++ +   G + + L LF  M    VK + V+ VS+LSAC+H G +++G+W    ++ 
Sbjct: 357 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 416

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLE 176
             +K ++     +VD+  + G +  A DF   M  + +   W +++G   ++G  E  L 
Sbjct: 417 YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIE--LG 474

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223
            F+  +   V    V +  +L          EG +   S+ RE G++
Sbjct: 475 KFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 521



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLM 181
           ++ + T LV++Y+  G+++ +   F  + +++VY W S+I     NG   +++  F  L+
Sbjct: 50  SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL 109

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             + +RP+  TF  VL+ C   G + +GR+       + G +  +     L+ +Y R G 
Sbjct: 110 LVSEIRPDFYTFPPVLKAC---GTLVDGRK-IHCWAFKLGFQWNVFVAASLIHMYSRFGF 165

Query: 242 LDEALDVINKMPMKPHAGAWGALLNA 267
              A  + + MP +   G+W A+++ 
Sbjct: 166 TGIARSLFDDMPFR-DMGSWNAMISG 190


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/457 (44%), Positives = 303/457 (66%), Gaps = 1/457 (0%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G L   + VFD +   + V   AMI+   K GD + A+++FD+MPER  + WN+M+ GY 
Sbjct: 225 GKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYE 284

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           +  +  +AL LF +M   D+  N  +++  +SA + + +L  GRW H YI ++  K    
Sbjct: 285 RNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGV 344

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LGT L++MYSKCG++  A+  F  + ++ +  WTSVI GL M+G  E++LELF  M + G
Sbjct: 345 LGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTG 404

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           ++P+ +TF+ VL  C   G  E+   +F  M  +YGI+P +EHYGCL+D+  RAG L+EA
Sbjct: 405 LKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEA 464

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
            D I +MP+K +   W +LL+  R + N  MGE A++ L++L     G YV+LSN+YA +
Sbjct: 465 KDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAA 524

Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
             W++V  VR++MK KG+KK PGCS IE    +HEF  GD++HP+  EI + L E+ ++L
Sbjct: 525 GLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKL 584

Query: 366 KLAGYVANTNPVMYDIEEE-EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDC 424
            +AG++ +T  V+  +EE+ EKE  L  HSE++AIAFGL+++K G PIRI+KNLR+C DC
Sbjct: 585 NVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDC 644

Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           H VTK++S ++NREII+RD +RFHHFK G CSCK +W
Sbjct: 645 HAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 128/254 (50%), Gaps = 18/254 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    ++++S  +KCG+++L RK+FD M ++D ++WN+++ GYA+CG+   AL +F  M 
Sbjct: 148 DKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMP 207

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D      S   ++   +  G L+  R      +R  ++ +V+   A+++ Y K G+ N
Sbjct: 208 EKD----SFSWTILIDGLSKSGKLEAAR---DVFDRMPIRNSVSW-NAMINGYMKAGDSN 259

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  M ER++ TW S+I G   N    K+L+LF +M +  + PN  T +  +    
Sbjct: 260 TAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAAS 319

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLDEALDVINKMPMKPH 257
             G+V  G   +      Y ++   +  G     L+++Y + G +  AL V   +P K  
Sbjct: 320 --GMVSLGTGRW---VHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIP-KKK 373

Query: 258 AGAWGALLNACRMY 271
            G W +++    M+
Sbjct: 374 LGHWTSVIVGLGMH 387



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 117/237 (49%), Gaps = 10/237 (4%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
            ++ P V  +   + A  +  ++  A  +FD + E   ++WN ++  Y +  +S +A+ L
Sbjct: 43  SLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIAL 102

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  + + D   +  ++  VL  C  LGAL +G+  H  + +    +   + ++LV MYSK
Sbjct: 103 FCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSK 161

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +      F  M++++V +W S+I G A  G  E +LE+F  M +     +  ++  +
Sbjct: 162 CGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTIL 217

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           + G    G +E  R+ FD M     +      +  +++ Y +AG  + A ++ ++MP
Sbjct: 218 IDGLSKSGKLEAARDVFDRMPIRNSVS-----WNAMINGYMKAGDSNTAKELFDQMP 269


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/443 (45%), Positives = 284/443 (64%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV   +++I   AKC  VD + ++F  +P+ D I+WN+++AG  Q G   E L  F 
Sbjct: 267 YDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ 326

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M I  +K N VS  S++ AC HL  L  G+  H YI R+R    V + +ALVDMY+KCG
Sbjct: 327 QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCG 386

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+  A   F  M+  ++ +WT++I G A++G    ++ LF  M+  GV+PN V F++VL 
Sbjct: 387 NIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLT 446

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+E  ++F+SM ++Y I P LEHY  + DL GR GRL+EA + I+ M ++P  
Sbjct: 447 ACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTG 506

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL ACR++KN E+ E  S+KL  ++ +N GAYVLLSNIY+ +  W     +R  M
Sbjct: 507 SVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAM 566

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + KG+KK P CS IE+  +VH F AGD++HP Y+ I   L  +  +++  GYV +T  V+
Sbjct: 567 RDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVL 626

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+EEE+K   LC HSE++AI FG+IS   G  IR+ KNLRVC DCH  TK ISK+  RE
Sbjct: 627 HDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGRE 686

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD +RFHHFK+GKCSC  +W
Sbjct: 687 IVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           RK+F+ MP+RD ++WN +++G AQ G   +AL +   M   D++ +  ++ SVL      
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
             L +G+  H Y  RN     V +G++L+DMY+KC  ++ +   F+ + + +  +W S+I
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYG 221
            G   NG  ++ L+ F  M  A ++PN V+F S++  C  +  +  G++ H   +R  + 
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              ++     LVD+Y + G +  A  + +KM +     +W A++
Sbjct: 370 GNVFIA--SALVDMYAKCGNIRTARWIFDKMELYDMV-SWTAMI 410


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 298/437 (68%), Gaps = 3/437 (0%)

Query: 28  AMISACAKCGD--VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIHD 84
            ++ A AK G+  V +ARK+FD++ ++D +++N++++ YAQ G S EA  +F  L++   
Sbjct: 223 TLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKV 282

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V  N +++ +VL A +H GAL  G+  H  + R  L+  V +GT+++DMY KCG +  A 
Sbjct: 283 VTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETAR 342

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  MK +NV +WT++I G  M+G   K+LELF  M  +GVRPN +TFVSVL  C   G
Sbjct: 343 LAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L + G   F++M+  +G+EP LEHYGC+VDL GRAG L +A D+I KM M+P +  W +L
Sbjct: 403 LHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSL 462

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L ACR++KN E+ E++  +L EL+  N G Y+LLS+IYA+S  W  V  VR  MK +G+ 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLV 522

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PG S++E++ EVH F  GDE HP+  +I   L E++R+L  AGYV+NT+ V +D++EE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE TL  HSEK+AIAFG+++   G  + +VKNLRVC DCH+V K+ISK+ +RE +VRD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHFK+G CSC  YW
Sbjct: 643 KRFHHFKDGFCSCGDYW 659



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 141/269 (52%), Gaps = 11/269 (4%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q+ F   ++ D+   +A+I   + CG ++ ARK+FDE+P+R+ ++W +M+ GY   G + 
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 72  EALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           +A+ LF  + I +      + L+ + MVSV+SAC+ + A       H ++ +      V+
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVS 219

Query: 126 LGTALVDMYSKC--GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMK 182
           +G  L+D Y+K   G +  A   F  + +++  ++ S++   A +G   ++ ++F  L+K
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIK 279

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           +  V  N +T  +VL      G +  G+   D + R  G+E  +     ++D+Y + GR+
Sbjct: 280 EKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRV 338

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMY 271
           + A    ++M  K +  +W A++    M+
Sbjct: 339 ETARLAFDRMKNK-NVRSWTAMIAGYGMH 366



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV+  T++I    KCG V+ AR  FD M  ++  +W AM+AGY   G + +AL LF  
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M    V+ N ++ VSVL+AC+H G  D G  W +    R  ++  +     +VD+  + G
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            + KA D    MK E +   W+S++  
Sbjct: 439 FLQKAYDLIQKMKMEPDSIIWSSLLAA 465



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 7/194 (3%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
           D  +WN+++A  A+ G S EAL  F  M+   +     S    + AC+ L  +  G+  H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
                   +  + + +AL+ MYS CG +  A   F  + +RN+ +WTS+I G  +NG   
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 173 KSLELFSLM------KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            ++ LF  +        A +  + +  VSV+  C  V   +   E   S   + G +  +
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVA-AKGLTESIHSFVIKRGFDRGV 218

Query: 227 EHYGCLVDLYGRAG 240
                L+D Y + G
Sbjct: 219 SVGNTLLDAYAKGG 232



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V++W SVI  LA +G   ++L  FS M++  + P   +F   ++ C  +  +  G++  
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                 +G +  +     L+ +Y   G+L++A  V +++P K +  +W +++
Sbjct: 100 QQA-FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMI 149


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/451 (46%), Positives = 288/451 (63%), Gaps = 18/451 (3%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIA------------------WNAMLAGYAQCGKS 70
           +I    KCG  + AR++FDEMPERD +A                  W AM+ G  + G+S
Sbjct: 171 LIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGES 230

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
             AL +F  MQ  DV  NEV++V VLSAC+ LGAL  GRW   Y++++R+++   +G AL
Sbjct: 231 NRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGAL 290

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           ++MYS+CG++++A   F  MKE+NV T+ S+I G A++G   +++ELF  + + G  P+ 
Sbjct: 291 INMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSS 350

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VTFV VL  C   GL E G E F SM ++YGIEP +EHYGC+VDL GR GRL+EA   I 
Sbjct: 351 VTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIR 410

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            M + P     GALL+AC+++ N E+ E  ++ LV  +  + G Y+LLSN Y+ S  W  
Sbjct: 411 MMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKE 470

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
              VR  M+ +G++K PGCS IEV+ E+HEF  GD  HP+  +I   L E+++ L+L GY
Sbjct: 471 AAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGY 530

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
              T  V++DIE+ EKE  L  HSE++AI +GLIS K    +R+VKNLRVC DCH   K+
Sbjct: 531 TPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKL 590

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           IS +  R+I+VRDRNRFHHF+ G CSC  YW
Sbjct: 591 ISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 29/266 (10%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           K+    H  D      ++  C+    +  A K+F      +   + A++ G        +
Sbjct: 54  KIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTD 113

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
            +HL++ M    +  +  ++ SVL AC    AL +GR  H  + +  L    ++   L++
Sbjct: 114 GIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIE 173

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYT------------------WTSVIGGLAMNGAGEKS 174
           +Y KCG    A   F  M ER+V                    WT++I GL  NG   ++
Sbjct: 174 LYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRA 233

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG---REHFDSMRREYGIEPWLEHY-- 229
           LE+F  M++  V PNEVT V VL  C  +G ++ G   R + D  R E      L H+  
Sbjct: 234 LEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIE------LNHFVG 287

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMK 255
           G L+++Y R G +DEA  V  +M  K
Sbjct: 288 GALINMYSRCGDIDEAQRVFEQMKEK 313



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I+  ++CGD+D A+++F++M E++ I +N+M+ G+A  GKS EA+ LF  +       
Sbjct: 289 ALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTP 348

Query: 88  NEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           + V+ V VL+AC+H G  + G    H   +   ++  +     +VD+  + G + +A  F
Sbjct: 349 SSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSF 408

Query: 147 FWGMK 151
              MK
Sbjct: 409 IRMMK 413


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/459 (44%), Positives = 305/459 (66%), Gaps = 6/459 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +L CL     V D ++    VC T +I+   +C DVD AR +FD + E   + +NAM+ G
Sbjct: 152 QLHCLSMKLGVDDNVY----VCPT-LINMYTECEDVDAARCVFDRIVEPCVVCYNAMITG 206

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YA+  +  EAL LF  MQ  ++K NE++++SVLS+C  LG+LD G+W H Y +++     
Sbjct: 207 YARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKY 266

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V + TAL+DM++KCG+++ A+  F  M+ ++   W+++I   A +G  E S+ +F  M+ 
Sbjct: 267 VKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRS 326

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
             V+P+E+TF+ +L  C   GLVEEGRE+F  M  E+GI P ++HYG +VDL GRAG L+
Sbjct: 327 ENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLE 386

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           +A + I+K+P+ P    W  LL AC  + N E+ E  S +++EL+  + G YV+LSN+YA
Sbjct: 387 DAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYA 446

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            +K W+ V ++R++MK +   K+PGCS IEV+  VHEFF+GD       ++   L E+ +
Sbjct: 447 RNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 506

Query: 364 RLKLAGYVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCW 422
            LKLAGYV +T+ V++ D+ ++EKE TL  HSEK+AIAFGL++   G  IR+VKNLRVC 
Sbjct: 507 ELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCR 566

Query: 423 DCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           DCH   K+IS +F R++++RD  RFHHF++GKCSC+ +W
Sbjct: 567 DCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 129/252 (51%), Gaps = 5/252 (1%)

Query: 19  HEPDVVCQTAMISACAKC---GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           H+ DV   T +I+ C +      +  AR +FD M E D + +N++  GY++     E  +
Sbjct: 58  HQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFN 117

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  +   D+  +  +  S+L AC    AL++GR  H    +  +   V +   L++MY+
Sbjct: 118 LFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYT 177

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           +C +++ A   F  + E  V  + ++I G A      ++L LF  M+   ++PNE+T +S
Sbjct: 178 ECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLS 237

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C ++G ++ G+       +++G   +++    L+D++ + G LD+A+ +   M  K
Sbjct: 238 VLSSCALLGSLDLGK-WIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYK 296

Query: 256 PHAGAWGALLNA 267
               AW A++ A
Sbjct: 297 -DTQAWSAMIVA 307


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/464 (43%), Positives = 307/464 (66%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   ++VFD +   DVV   +MI+   K G+++LA+K+F+ M ++D + W +M
Sbjct: 153 MYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSM 212

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ Y Q     +AL LF  M    ++ +  ++VSVLSA   LG +++G+W H Y+  N++
Sbjct: 213 ISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKI 272

Query: 121 KMTV-TLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELF 178
           +++   +G+AL+DMYSKCG +  A   F  +  R N+  W S+I GLA++G   ++L++F
Sbjct: 273 ELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIF 332

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M++  + PNE+TF+ +L  C   GLVEEG+ +F+SM  +Y I P ++HYGC++DL+GR
Sbjct: 333 VEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGR 392

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL++AL VI  MP +    AW A+L+A   + + E+G+ A+ + +EL   +  +YVLL
Sbjct: 393 AGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLL 452

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN-EIEVM 357
           SNIYA++  WD V  +R +M+ +GVKK+ GCS + V+ +VHEF  G E    Y+ ++   
Sbjct: 453 SNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAK 512

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + E+  RLKL GY  +   V+ DIE+E KE  L  HSEK+AIAFGLI + +  PI IVKN
Sbjct: 513 IAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKN 572

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   K++SKV+NR+II+RD+NRFHHF+ G CSC  YW
Sbjct: 573 LRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 122/289 (42%), Gaps = 39/289 (13%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+  V    A  S     G +D A  +F  +   +   + A++ G++      E+L L+ 
Sbjct: 37  HQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYA 96

Query: 79  LMQ--IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS- 135
            M   ++     E S+ SVL AC  L A D+GR  H  + +  L     +G ++V MY  
Sbjct: 97  RMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYID 156

Query: 136 ------------------------------KCGNMNKAMDFFWGMKERNVYTWTSVIGGL 165
                                         K G +  A   F  M +++V TWTS+I   
Sbjct: 157 FGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAY 216

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIE 223
             N    K+L+LF  M   G+RP+    VSVL     +G VEEG+    + SM +   IE
Sbjct: 217 VQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNK---IE 273

Query: 224 PWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
                 G  L+D+Y + G ++ A  V   +  + + G W ++++   ++
Sbjct: 274 LSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH 322


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/443 (47%), Positives = 293/443 (66%), Gaps = 2/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFH 78
           EP    QT +++  A+C +V LAR +FD M E ++ +AW++M+ GY++ G   EAL LF 
Sbjct: 159 EPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFR 218

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ   V  +EV+MVSV+SAC   GALD G+W H +I+R  + + + L TAL+DMY+KCG
Sbjct: 219 DMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCG 278

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + +A   F  M ER+   W+++I GLAM+G  E +L LFS M Q  VRPN VTFV VL 
Sbjct: 279 LIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLS 338

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV++GR ++ +M+ E GIE  +E+YGC+VDL  R+G LDEA   +  MP+ P++
Sbjct: 339 ACAHSGLVDDGRRYWCTMQ-ELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNS 397

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL A +     ++ ELASR+L ELE +N   YVLLSN+YA +  WDRV  +R+ M
Sbjct: 398 VIWRNLLVASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKM 457

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K   V  + GCS IE++  +H+F   D +HP   +I ++L EI+ R+  AG+   T  V+
Sbjct: 458 KDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAVL 517

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+ EEEKE  LC+HSE++AIA+GL+  K    IR+VKNLR C DCH+VTK+ISK + RE
Sbjct: 518 HDVVEEEKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYGRE 577

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRDR RFH F  G CSC  +W
Sbjct: 578 IIVRDRVRFHRFIGGSCSCNDFW 600



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 129/256 (50%), Gaps = 12/256 (4%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGY-----AQCGKSREALHLF-HLMQIHDVKLNEVSMVSV 95
           AR +FD++PE     +N+++        +    + +   L+  ++       N  ++  V
Sbjct: 77  ARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFV 136

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RN 154
           L ACT LG   +G+  H     + L+ +  + T L+++Y++C  +  A + F GM E +N
Sbjct: 137 LKACTALG---EGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKN 193

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           +  W+S+IGG +  G   ++L LF  M+  GV P+EVT VSV+  C   G ++ G+    
Sbjct: 194 LVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHA 253

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274
            + R+ GI   LE    L+D+Y + G ++ A  V + M ++    AW A++    M+   
Sbjct: 254 FIDRK-GITVDLELSTALIDMYAKCGLIERAKSVFDSM-VERDTKAWSAMIVGLAMHGLA 311

Query: 275 EMGELASRKLVELETK 290
           E       ++++L+ +
Sbjct: 312 EDALGLFSRMLQLKVR 327


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/442 (44%), Positives = 296/442 (66%), Gaps = 2/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  ++A+I   ++ G+++ A ++FDEM   D + W++++AG+AQ     EAL LF  
Sbjct: 95  DSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKR 154

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+       + ++ SVL ACT L  L+ GR  HV++ +      + L  AL+DMY KCG+
Sbjct: 155 MKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGS 212

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M E++V +W+++I GLA NG  +++L+LF  MK  G++PN VT V VL  
Sbjct: 213 LEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFA 272

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVEEG  +F SM+  +GI+P  EHYGC++DL GRAGRL EA+D+IN+M  +P A 
Sbjct: 273 CSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAV 332

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W ALLNACR+++N ++   A+++++ L+ ++ G YVLLSNIYA ++ W+ V  VR+ M 
Sbjct: 333 TWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMT 392

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+KK PGCS IEV +++H F  GD +HP+  EI + L ++  +L   GYV +TN V+ 
Sbjct: 393 NRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQ 452

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E E+ +D+L  HSEK+AI FGL+SL  G  IRI KNLR+C DCH  TK+++K+  R I
Sbjct: 453 DLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRII 512

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RD  R+HHF++G CSC  +W
Sbjct: 513 VIRDPVRYHHFQDGLCSCGDFW 534



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I+   K G +  A+ +FD+MP+R+ ++W  M++ Y+    + +AL    LM    V+ N
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             +  SVL AC  L  L   R  H  I +  L   V + +AL+D+YS+ G +  A+  F 
Sbjct: 66  MFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M   ++  W+S+I G A N  G+++L LF  MK+AG    + T  SVLR C  + L+E 
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           GR+ H   ++  Y  +  L +   L+D+Y + G L++A  V  +M  K
Sbjct: 183 GRQVHVHVLK--YDQDLILNN--ALLDMYCKCGSLEDANAVFVRMVEK 226



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 8/151 (5%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D++   A++    KCG ++ A  +F  M E+D I+W+ M+AG AQ G S+EAL LF 
Sbjct: 193 YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFE 252

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT----ALVDMY 134
            M++  +K N V++V VL AC+H G +++G +   Y    +    +  G      ++D+ 
Sbjct: 253 SMKVLGIKPNYVTIVGVLFACSHAGLVEEGLY---YFHSMKELFGIDPGREHYGCMIDLL 309

Query: 135 SKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            + G +++A+D    M+ E +  TW +++  
Sbjct: 310 GRAGRLSEAVDLINEMECEPDAVTWRALLNA 340


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/502 (42%), Positives = 312/502 (62%), Gaps = 42/502 (8%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMI------------------------------ 30
           MYA+ G +G   +VFD +   DVVC TAMI                              
Sbjct: 176 MYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEIT 235

Query: 31  -----SACAKCGD----VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
                SA  + GD    +  AR +FD M ER+ I+WN+ML+GY Q G+  +AL LF+ MQ
Sbjct: 236 AISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQ 295

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +   N V+ + ++SAC++LG+   GR  H ++  +++ +  TL  A++DMY KCG+++
Sbjct: 296 ASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLD 355

Query: 142 KAMDFFWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            A++ F    + ER+V +W  +I G  ++G G+++LELFS M+  GV PN++TF S+L  
Sbjct: 356 TAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSA 415

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL++EGR+ F  M +   + P ++HY C+VD+ GRAG L+EA  +I K+P +P   
Sbjct: 416 CSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDE 474

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL ACR++ NTE+GE+A+  L +LE ++ G YVL+SNIYA S  W  V  VRQ MK
Sbjct: 475 VWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMK 534

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           ++G+KK    SVIE   EVH F   D++ P Y E+   +  ++  +K+ GYV + + V++
Sbjct: 535 SRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLH 594

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E E+KE  L  HSEK+A+AFG++ + +G+PI++ KNLRVC DCH   K IS ++ R+I
Sbjct: 595 DVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKI 654

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHF+ G+CSC  YW
Sbjct: 655 IVRDGNRFHHFQGGRCSCGDYW 676



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 126/276 (45%), Gaps = 24/276 (8%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMP------ERDPIAW--NAMLAGYAQCGK 69
           +H P  + +  +I   +K GD+  AR +FD          + P ++  N ML  YA  G+
Sbjct: 55  LHTPHFLAR--LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGR 112

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTVTLGT 128
           S EA+ L+  MQ   V +N  +   VL  C + LGA+  G   H  + R      + +  
Sbjct: 113 SYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRTGFGSDLFVEA 171

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALVDMY+KCG +  A + F  M  R+V  WT++I          K+L LF  M++ G   
Sbjct: 172 ALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLG 231

Query: 189 NEVTFVSVLRGCCVVG----LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           +E+T +SV      +G     +   R  FD M    GI      +  ++  Y + GR  +
Sbjct: 232 DEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGIS-----WNSMLSGYTQNGRPTD 286

Query: 245 ALDVINKMPMK---PHAGAWGALLNACRMYKNTEMG 277
           AL + N+M      P+      +++AC    +  +G
Sbjct: 287 ALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 322


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/444 (45%), Positives = 295/444 (66%), Gaps = 7/444 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+  + A+I   +  G+++LAR +FDE   RD +++N M+ GYA+  +   AL LF  
Sbjct: 67  ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 126

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ  D    EV++V+VLSAC  LGA D G R  H YIE         L  A++DMY+KCG
Sbjct: 127 MQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCG 182

Query: 139 NMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           +++ A++ F   G   +  + + S+I GLA +G GE ++ +F  +   G++P+EVTFV V
Sbjct: 183 SIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGV 242

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GL+EEG++ F+SM   YGI+P +EHYGC+VDL GR G L+EA D++ KMP + 
Sbjct: 243 LCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEA 302

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
           ++  W ALL+ACR + N ++GE+A +KL+E+E ++   YVLLSNI A++  W+    VR+
Sbjct: 303 NSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRK 362

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M+  G++K PG S IE+   +H F A D++HP+  EIE+ML +++ RLK AGYV NT  
Sbjct: 363 VMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQ 422

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           VM+DI+EEEKE  +  HSEK+A+AFGL+       IRIVKNLR+C DCH   K++S+++ 
Sbjct: 423 VMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYG 482

Query: 437 REIIVRDRNRFHHFKEGKCSCKGY 460
           REI VRD  RFHHF+ G CSC  +
Sbjct: 483 REITVRDTMRFHHFRNGSCSCMDF 506



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 5/197 (2%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           WN M+ GY++    REA+ L+  M    +   N  +   +L++C  L +L+ G   H +I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
            ++  +  + +  AL+ +YS  GN+N A   F     R++ ++ ++I G A     E +L
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LF  M+ +    +EVT V+VL  C  +G  + G+  +                  ++D+
Sbjct: 122 CLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 236 YGRAGRLDEALDVINKM 252
           Y + G +D AL++  ++
Sbjct: 178 YAKCGSIDSALEIFRRV 194


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/461 (44%), Positives = 301/461 (65%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G L   +K+FDG+ E DVV  T MI +C  CG V+ A ++F+EM  RD + W  +
Sbjct: 169 LYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMV 228

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G  + G+    L +F  MQ+  V+ NEV+ V VLSAC  LGAL+ GRW H Y+ +  +
Sbjct: 229 IDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGV 288

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   +  AL++MYS+CG++++A   F G++ ++V T+ S+IGGLA++G   +++ELFS 
Sbjct: 289 EVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSE 348

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +  VRPN +TFV VL  C   GLV+ G E F+SM   +GIEP +EHYGC+VD+ GR G
Sbjct: 349 MLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVG 408

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL+EA D I +M ++       +LL+AC+++KN  MGE  ++ L E    + G++++LSN
Sbjct: 409 RLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSN 468

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            YA    W     VR+ M+  G+ K PGCS IEV+  +HEFF+GD  HP    I   L E
Sbjct: 469 FYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEE 528

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++   K  GY+  T   ++DI++E+KE  L  HSE++AI +GL+S +    +R+ KNLR+
Sbjct: 529 LNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRI 588

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH + K+I+K+  R+I+VRDRNRFHHF+ G+CSCK YW
Sbjct: 589 CDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 34/298 (11%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
           K   +D A K+F      +   + +++ G+   G   +A++LF  M    V  +  ++ +
Sbjct: 71  KVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTA 130

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L AC    AL  G+  H  + ++ L +  ++   LV++Y KCG +  A   F GM ER+
Sbjct: 131 MLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERD 190

Query: 155 VYT-------------------------------WTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V                                 WT VI GL  NG   + LE+F  M+ 
Sbjct: 191 VVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQV 250

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV PNEVTFV VL  C  +G +E GR     MR+  G+E      G L+++Y R G +D
Sbjct: 251 KGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRK-CGVEVNRFVAGALINMYSRCGDID 309

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMY-KNTEMGELASRKLVELETKNHGAYVLLSN 300
           EA  + + + +K     + +++    ++ K+ E  EL S  L E    N   +V + N
Sbjct: 310 EAQALFDGVRVKD-VSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLN 366



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 100/214 (46%), Gaps = 7/214 (3%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H +  + R      +   L+ +Y K   ++ A+  F   +  NVY +TS+I G    G+ 
Sbjct: 47  HCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSY 106

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYG 230
             ++ LF  M +  V  +     ++L+ C +   +  G+E H   ++   G++  +    
Sbjct: 107 TDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALK- 165

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
            LV+LYG+ G L++A  + + MP +    A   ++ +C    +  M E A     E+ T+
Sbjct: 166 -LVELYGKCGVLEDARKMFDGMPERD-VVACTVMIGSCF---DCGMVEEAIEVFNEMGTR 220

Query: 291 NHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           +   + ++ +    +  ++R + V + M+ KGV+
Sbjct: 221 DTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVE 254


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/442 (46%), Positives = 290/442 (65%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T M+    K G  D AR +FD MPER+ ++WNAM++GY +  +  +AL +F  M+
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N     + + ACT  GAL +GR  H ++E++ ++M   L TA+VDMY KCG + 
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283

Query: 142 KAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +A   F  +    + + TW  +IGG A++G GE +L+LF  M++ GV P++VT V+VL  
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTA 343

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G++ EGR +F+ + + YGIEP +EHYGC+VDLYGRAGRL+EA  VI  MPM+P  G
Sbjct: 344 CAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVG 403

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
             GAL  A +++ + ++GE    +++EL+ +N G YVLL+N+ A +  W+ V  VR++M 
Sbjct: 404 VLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMD 463

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            + V K  G SVIEV  EV EF  G   HPR  E+  M  ++ R ++  GYV +T  V++
Sbjct: 464 ERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRDVLH 523

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            I EEEKE  L  HSEK+AIAFGL+  + G  +RI KNLRVC DCH+ TK +S+VF R+I
Sbjct: 524 AIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQI 583

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRDRNRFHHFK+G+CSCK YW
Sbjct: 584 VVRDRNRFHHFKDGQCSCKDYW 605


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/442 (44%), Positives = 295/442 (66%), Gaps = 3/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EPD++   ++ +  AKCG V  A+ +FD+M   + I WNAM++GYA+ G +++A+ LFH 
Sbjct: 256 EPDLL--ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHE 313

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   DV+ + +S+ S +SAC  +G+L+Q RW   Y+ R+  +  V + +AL+DM++KCG+
Sbjct: 314 MINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGS 373

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F    +R+V  W+++I G  ++G   +++ L+  M++ GV PN+VTF+ +L  
Sbjct: 374 VECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIA 433

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+V EG   F+ M  ++ I P  +HY C++DL GRAG LD+A +VI  MP++P   
Sbjct: 434 CNHSGMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVT 492

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+AC+ +++ E+G+ A+++L  ++  N G YV LSN+YA ++ WDRV  VR  MK
Sbjct: 493 VWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K  GCS +EV   +  F  GD++HPRY EIE  +  I  RLK  G+VAN +  ++
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+ +EE E+TLC HSE++ IA+GLIS  +G  +RI KNLR C +CH  TK+ISK+  REI
Sbjct: 613 DLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREI 672

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHFK+G CSC  YW
Sbjct: 673 VVRDTNRFHHFKDGVCSCGDYW 694



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 140/257 (54%), Gaps = 8/257 (3%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKS 70
           +VF    E DV  Q  +I+  AKC  +  AR +F+   +PER  ++W A+++ YAQ G+ 
Sbjct: 144 QVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL +F  M+  DVK + V++VSVL+A T L  L+QGR  H  + +  L+    L  +L
Sbjct: 204 VEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISL 263

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
             MY+KCG +  A   F  MK  N+  W ++I G A NG  + +++LF  M    VRP+ 
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDT 323

Query: 191 VTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           ++  S +  C  VG +E+ R  + + S R +Y  + ++     L+D++ + G ++ A  V
Sbjct: 324 ISITSAISACAQVGSLEQARWMDEYVS-RSDYRDDVFIS--SALIDMFAKCGSVECARSV 380

Query: 249 INKMPMKPHAGAWGALL 265
            ++  +      W A++
Sbjct: 381 FDRT-LDRDVVVWSAMI 396



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 6/243 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I A +  GD+  AR++FD++P      WNA++ GY++    ++AL ++  MQ+  V 
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   +L AC  L  L  GR+ H  + R   +  V +   L+ +Y+KC  +  A   
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTV 176

Query: 147 FWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           F G  + ER + +WT+++   A NG   ++LE+FS M++  V+P+ V  VSVL     + 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQ 236

Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            +E+GR  H   M+     EP L     L  +Y + G++  A  + +KM   P+   W A
Sbjct: 237 DLEQGRSIHASVMKMGLETEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNA 293

Query: 264 LLN 266
           +++
Sbjct: 294 MIS 296



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 1/147 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +  DV   +A+I   AKCG V+ AR +FD   +RD + W+AM+ GY   G++REA+ L+ 
Sbjct: 354 YRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYR 413

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V  N+V+ + +L AC H G + +G W    +  +++         ++D+  + G
Sbjct: 414 AMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAG 473

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           ++++A +    M  +  V  W +++  
Sbjct: 474 HLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/459 (42%), Positives = 295/459 (64%), Gaps = 2/459 (0%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           +G L    ++    H+ D +  T ++   + C   + A K+FDE+P+ D ++WN +++  
Sbjct: 185 MGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCC 244

Query: 65  AQCGKSREALHLFHLMQ--IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
               ++R+AL +F +MQ      + ++V+ + +L AC +LGAL+ G   H YIE +    
Sbjct: 245 IHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDG 304

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
            + L  +L+ MYS+CG + KA   F  M ERNV +W+++I G AM+G G +++E F  M+
Sbjct: 305 ALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQ 364

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           Q GV P++ T   VL  C   GLV++G   FD M + +GIEP + HYGC+VDL GRAG L
Sbjct: 365 QLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLL 424

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302
           D+A  +I  M +KP +  W  LL ACR++++  +GE     L+EL+ +  G YVLL NIY
Sbjct: 425 DQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIY 484

Query: 303 AESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEIS 362
           +   NWD+V ++R+ MK KG++  PGCS IE+  +VHEF   D  HPR +EI  ML EI 
Sbjct: 485 SSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIG 544

Query: 363 RRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCW 422
           ++LK+AGYVA  +  ++++  EEK + L  HSEK+AIAFG+++   G  IR+ KNLR+C 
Sbjct: 545 KQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICV 604

Query: 423 DCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           DCH+  K++S  +NRE+++RDR RFHHF+EG+CSC GYW
Sbjct: 605 DCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 115/243 (47%), Gaps = 4/243 (1%)

Query: 31  SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
           +A +   D+  + ++F ++ +     +N M+  Y+      +  +L+  M+   V  N +
Sbjct: 110 AALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPL 169

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           S   V+ +C  + +L  G   H  I R+  +    L T L+D+YS C    +A   F  +
Sbjct: 170 SSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEI 229

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPNEVTFVSVLRGCCVVGLVEE 208
            + +  +W  +I     N     +L +F +M+    G  P++VT + +L+ C  +G +E 
Sbjct: 230 PQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEF 289

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G E   +   E+G +  L     L+ +Y R GRL++A  +  +M  + +  +W A+++  
Sbjct: 290 G-ERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDER-NVVSWSAMISGF 347

Query: 269 RMY 271
            M+
Sbjct: 348 AMH 350


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/461 (45%), Positives = 302/461 (65%), Gaps = 1/461 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G LG  ++VF+ + E DVV  T MIS+ +  G V+ A  +F  +  +D + W AM
Sbjct: 191 LYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAM 249

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G+ +  ++  AL  F  MQ  +V+ NE ++V VLSAC+ LGAL+ GRW H Y+ +  +
Sbjct: 250 IDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI 309

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++ + +G AL++MYS+CG++++A   F  MK+R+V T+ ++I GL+MNG   +++ELF +
Sbjct: 310 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 369

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M    +RP  VTFV VL  C   GLV+ G E F SM R+Y +EP +EHYGC+VDL GR G
Sbjct: 370 MVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVG 429

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL+EA D+I  M M P     G LL+AC+M+KN E+GE  +++L +    + G YVLLS+
Sbjct: 430 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSH 489

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA S  W     VR  MK  G++K PGCS IEV+ E+HEF  GD  HP+   I   L E
Sbjct: 490 VYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEE 549

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++R L+L GY      V+ DIE+ EKE  L  HSE++AI +GLIS +    IR++KNLRV
Sbjct: 550 LNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRV 609

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C+DCH   K+I+K+  R+I+VRDRNRFH+F+ G CSC  YW
Sbjct: 610 CYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 32/273 (11%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q + +G H  D      ++ +C+KC  +D A ++F      +   + A++ G+   G 
Sbjct: 69  HAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EA+ L+  M    +  +   M S+L AC    AL +GR  H    +        +   
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 187

Query: 130 LVDMYSKCGNMNKAMDFFWGMKE------------------------------RNVYTWT 159
           ++++Y KCG +  A   F  M E                              ++   WT
Sbjct: 188 IMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWT 247

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           ++I G   N    ++LE F  M+   VRPNE T V VL  C  +G +E GR     MR+ 
Sbjct: 248 AMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK- 306

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           + IE  L     L+++Y R G +DEA  V ++M
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEM 339



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 22/267 (8%)

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L++  ++S+L    H+   +Q    H  + RN       +   L+   SKC  ++ A   
Sbjct: 47  LDQKQIISLLQRSRHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 103

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F      NVY +T++I G   +G   ++++L+S M    + P+     S+L+ C     +
Sbjct: 104 FQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLAL 163

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            EGRE H  +++  +     +     +++LYG+ G L +A  V  +MP      A   ++
Sbjct: 164 REGREVHSRALKLGFSSNRLVRLR--IMELYGKCGELGDARRVFEEMP--EDVVASTVMI 219

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           ++   Y +  + E A      +  K+   +  + + +  ++  +R +   + M+ + V+ 
Sbjct: 220 SS---YSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 276

Query: 326 --------LPGCS---VIEVDREVHEF 341
                   L  CS    +E+ R VH +
Sbjct: 277 NEFTIVCVLSACSQLGALEIGRWVHSY 303


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/453 (44%), Positives = 295/453 (65%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  G+ +   V  T +I+    CGD+D +R++FD++ E   +A+NA++   A+  +
Sbjct: 135 HCFAVKLGVSDNMYVVPT-LINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNR 193

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + EAL LF  +Q   +K  +V+M+ VLS+C  LG+LD GRW H Y+++      V + T 
Sbjct: 194 ANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTT 253

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMY+KCG+++ A++ F  M +R+   W+++I   A +G G +++ + + MK+  V+P+
Sbjct: 254 LIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPD 313

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+TF+ +L  C   GLVEEG E+F  M  EYGI P ++HYGC+VDL GRAGRLDEA   I
Sbjct: 314 EITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFI 373

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           +++P+KP    W  LL+AC  + N EMG+    ++ EL+  + G YV+ SN+ A    WD
Sbjct: 374 DELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWD 433

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V ++R+ M  KG  K+PGCS IEV+  VHEFFAG+  H     +   L E+ + LK AG
Sbjct: 434 DVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAG 493

Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV +T+ V Y D+E+EEKE  L  HSEK+AI FGL++   G  IR+VKNLRVC DCH+  
Sbjct: 494 YVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAA 553

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K IS +F R+II+RD  RFHHFK+GKCSC  YW
Sbjct: 554 KFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 115/226 (50%), Gaps = 17/226 (7%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A ++FD++ + + + +N M  GYA+       +  F                  L   + 
Sbjct: 80  AHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFR---------------RCLRLVSK 124

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           + AL +G+  H +  +  +   + +   L++MY+ CG+++ +   F  + E  V  + ++
Sbjct: 125 VKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAI 184

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I  LA N    ++L LF  +++ G++P +VT + VL  C ++G ++ GR   + +++ YG
Sbjct: 185 IMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKK-YG 243

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            + +++    L+D+Y + G LD+A++V   MP K    AW A++ A
Sbjct: 244 FDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWSAIIVA 288


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/450 (45%), Positives = 298/450 (66%), Gaps = 1/450 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++FD +    VV   ++++   + G+VD A + F+ MPE++ ++WN +++G  Q     E
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452

Query: 73  ALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           A+ +F  MQ  + V  + V+M+S+ SAC HLGALD  +W + YIE+N +++ V LGT LV
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DM+S+CG+   AM  F  +  R+V  WT+ IG +AM G  E+++ELF  M + G++P+ V
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            FV  L  C   GLV++G+E F SM + +G+ P   HYGC+VDL GRAG L+EA+ +I  
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MPM+P+   W +LL ACR+  N EM   A+ K+  L  +  G+YVLLSN+YA +  W+ +
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR  MK KG++K PG S I++  + HEF +GDE+HP    IE ML E+S+R    G+V
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            + + V+ D++E+EK   L +HSEK+A+A+GLIS  +G  IRIVKNLRVC DCH   K  
Sbjct: 753 PDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFA 812

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SKV+NREII+RD NRFH+ ++GKCSC  +W
Sbjct: 813 SKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 130/238 (54%), Gaps = 2/238 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF- 77
           +  D+  Q +++   A+CG++D ARK+FDEM ER+ ++W +M+ GYA+   +++A+ LF 
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +++  +V  N V+MV V+SAC  L  L+ G   + +I  + +++   + +ALVDMY KC
Sbjct: 225 RMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC 284

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
             ++ A   F      N+    ++       G   ++L +F+LM  +GVRP+ ++ +S +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             C  +  +  G+     + R  G E W      L+D+Y +  R D A  + ++M  K
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 135/298 (45%), Gaps = 44/298 (14%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACA----KCGDVDLARKMFDEMPERDPIAWN 58
           A+L  L   +KV+  I    +     M+SA      KC  +D+A+++FDE    +    N
Sbjct: 247 AKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM + Y + G +REAL +F+LM    V+ + +SM+S +S+C+ L  +  G+  H Y+ RN
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             +    +  AL+DMY KC   + A   F  M  + V TW S++ G   NG  + + E F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-------------- 224
             M +     N V++ +++ G     L EE  E F SM+ + G+                
Sbjct: 427 ETMPE----KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGH 482

Query: 225 --------WLEHY-------------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
                   W+ +Y               LVD++ R G  + A+ + N +  +    AW
Sbjct: 483 LGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR-DVSAW 539



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 20  EPDVVCQTAMISACAKCG---DVDLARKMFDEMPERDP-IAWNAMLAGYAQCGKSREALH 75
           + DV   T +++   + G    +  A+++F+          +N+++ GYA  G   EA+ 
Sbjct: 61  DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAIL 120

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M    +  ++ +    LSAC    A   G   H  I +      + +  +LV  Y+
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA 180

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL-FSLMKQAGVRPNEVTFV 194
           +CG ++ A   F  M ERNV +WTS+I G A     + +++L F +++   V PN VT V
Sbjct: 181 ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMV 240

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            V+  C  +  +E G + + +  R  GIE        LVD+Y +   +D A
Sbjct: 241 CVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/435 (44%), Positives = 284/435 (65%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +A+IS  + C  +++A  +F E+  RD + WN++++  AQ G+S  AL L   M + +V+
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           +N V+MVS L AC+ L AL QG+  H +I R  L     +  +L+DMY +CG++ K+   
Sbjct: 598 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRI 657

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M +R++ +W  +I    M+G G  ++ LF   +  G++PN +TF ++L  C   GL+
Sbjct: 658 FDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLI 717

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEG ++F  M+ EY ++P +E Y C+VDL  RAG+ +E L+ I KMP +P+A  WG+LL 
Sbjct: 718 EEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLG 777

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++ N ++ E A+R L ELE ++ G YVL++NIY+ +  W+    +R +MK +GV K 
Sbjct: 778 ACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKP 837

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS IEV R++H F  GD +HP   +I   +  +   +K  GYV +TN V+ D++E+EK
Sbjct: 838 PGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEK 897

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E +LC HSEK+A+AFGLIS   G P+RI+KNLRVC DCH  TK ISKV  R+II+RD  R
Sbjct: 898 EFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYR 957

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF +G CSC  YW
Sbjct: 958 FHHFVDGVCSCGDYW 972



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 6/274 (2%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAW 57
           YA+   +   ++ F  I + D+V   AM++  A  G  + A ++  EM     E D I W
Sbjct: 408 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW 467

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N ++ G+ Q G  + AL  F  M    +  N  ++   L+AC  +  L  G+  H Y+ R
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLR 527

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           N ++++  +G+AL+ MYS C ++  A   F  +  R+V  W S+I   A +G    +L+L
Sbjct: 528 NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDL 587

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
              M  + V  N VT VS L  C  +  + +G+E    + R  G++        L+D+YG
Sbjct: 588 LREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR-CGLDTCNFILNSLIDMYG 646

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           R G + ++  + + MP +    +W  +++   M+
Sbjct: 647 RCGSIQKSRRIFDLMPQRDLV-SWNVMISVYGMH 679



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 166/345 (48%), Gaps = 30/345 (8%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMP-----ERDPIAWNAMLAGYAQCGKSREAL 74
           +PD V   A+IS  A+ G  + A K F EM      + + ++W A++AG  Q G   EAL
Sbjct: 288 KPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEAL 347

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDM 133
            +F  M +  VK N +++ S +SACT+L  L  GR  H Y I+   L   + +G +LVD 
Sbjct: 348 SVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDY 407

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+KC ++  A   F  +K+ ++ +W +++ G A+ G+ E+++EL S MK  G+ P+ +T+
Sbjct: 408 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW 467

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV---IN 250
             ++ G    G  +   E F  M    G++P        +   G+   L    ++   + 
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVL 526

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
           +  ++   G   AL++   MY   +  E+A     EL T++    V+ ++I +      R
Sbjct: 527 RNHIELSTGVGSALIS---MYSGCDSLEVACSVFSELSTRD---VVVWNSIISACAQSGR 580

Query: 311 VINVRQIMKAKG-----------VKKLPGCSVIEVDR---EVHEF 341
            +N   +++              V  LP CS +   R   E+H+F
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQF 625



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 12/257 (4%)

Query: 15  FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74
           F G    +V CQT         G V+ AR+MFD+M ER+  +W A++  Y   G   E +
Sbjct: 125 FLGSRLLEVYCQT---------GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETI 175

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
            LF+LM    V+ +      V  AC+ L     G+  + Y+     +    +  +++DM+
Sbjct: 176 KLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMF 235

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
            KCG M+ A  FF  ++ ++V+ W  ++ G    G  +K+L+  S MK +GV+P++VT+ 
Sbjct: 236 IKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWN 295

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +++ G    G  EE  ++F  M      +P +  +  L+    + G   EAL V  KM +
Sbjct: 296 AIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVL 355

Query: 255 ---KPHAGAWGALLNAC 268
              KP++    + ++AC
Sbjct: 356 EGVKPNSITIASAVSAC 372



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 1/162 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L  C  L  L  G   H  +  N + +   LG+ L+++Y + G +  A   F  M ER
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           NV++WT+++      G  E++++LF LM   GVRP+   F  V + C  +     G++ +
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           D M    G E      G ++D++ + GR+D A     ++  K
Sbjct: 214 DYM-LSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/441 (46%), Positives = 292/441 (66%), Gaps = 2/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV   A++   AK G +D A K+F+ +  +D I+WN ++ GYAQ G + EA+ ++ +M+
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 82  -IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              ++  N+ + VS+L A  H+GAL QG   H  + +  L + V + T L+D+Y KCG +
Sbjct: 512 ECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRL 571

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             AM  F+ + + +  TW ++I    ++G  EK+L+LF  M   GV+P+ VTFVS+L  C
Sbjct: 572 VDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSAC 631

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G VEEG+  F  M+ EYGI+P L+HYGC+VDL GRAG L+ A   I  MP++P A  
Sbjct: 632 SHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASI 690

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL ACR++ N E+G+ AS +L E+++KN G YVLLSNIYA    W+ V  VR + + 
Sbjct: 691 WGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARE 750

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G+KK PG S IEV+R+V  F+ G+++HP+  EI   L  ++ ++K  GY+ + + V+ D
Sbjct: 751 RGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQD 810

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EE+EKE  L  HSE++AIAFG+IS     PIRI KNLRVC DCH+ TK IS++  REI+
Sbjct: 811 VEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIV 870

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFHHFK+G CSC  YW
Sbjct: 871 VRDSNRFHHFKDGICSCGDYW 891



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 142/259 (54%), Gaps = 6/259 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    A+I+  AK G+++ ARK F +M   D ++WN+++A Y Q      A   F  
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVK 407

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVDMYSKCG 138
           MQ++  + + +++VS+ S           R  H +I  R  L   V +G A+VDMY+K G
Sbjct: 408 MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLG 467

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVL 197
            ++ A   F  +  ++V +W ++I G A NG   +++E++ +M++   + PN+ T+VS+L
Sbjct: 468 LLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 198 RGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                VG +++G R H   ++    ++ ++    CL+D+YG+ GRL +A+ +  ++P + 
Sbjct: 528 PAYAHVGALQQGMRIHGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQES 585

Query: 257 HAGAWGALLNACRMYKNTE 275
               W A+++   ++ + E
Sbjct: 586 SV-TWNAIISCHGIHGHAE 603



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 15/253 (5%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    ++I   ++ G   +AR +FD+MP RD  +WNAM++G  Q G + +AL +   M+
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +K+N V++VS+L  C  LG +      H+Y+ ++ L+  + +  AL++MY+K GN+ 
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M   +V +W S+I     N     +   F  M+  G +P+ +T VS      
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS------ 422

Query: 202 VVGLVEEGRE-------HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +  +V + R+       H   MRR + +E  +     +VD+Y + G LD A  V   + +
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG-NAVVDMYAKLGLLDSAHKVFEIILV 481

Query: 255 KPHAGAWGALLNA 267
           K    +W  L+  
Sbjct: 482 K-DVISWNTLITG 493



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 153/313 (48%), Gaps = 24/313 (7%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++A L   G  Q +F           T +++  A  GDV L+R  FD++P++D   WN+M
Sbjct: 138 LHALLVVAGKVQSIF---------ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSM 188

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y   G   EA+  F+ L+ + +++ +  +   VL AC   G L  GR  H +  +  
Sbjct: 189 ISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLG 245

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  V +  +L+ MYS+ G    A   F  M  R++ +W ++I GL  NG   ++L++  
Sbjct: 246 FQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLD 305

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M+  G++ N VT VS+L  C  +G +      H   ++  +G+E  L     L+++Y +
Sbjct: 306 EMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK--HGLEFDLFVSNALINMYAK 363

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL- 297
            G L++A     +M +     +W +++ A   Y+  +    A    V+++       +L 
Sbjct: 364 FGNLEDARKAFQQMFIT-DVVSWNSIIAA---YEQNDDPVTAHGFFVKMQLNGFQPDLLT 419

Query: 298 ---LSNIYAESKN 307
              L++I A+S++
Sbjct: 420 LVSLASIVAQSRD 432


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 309/463 (66%), Gaps = 8/463 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           YA+ G      ++FD +     + V   AMISA  + GD+D ARK+F+ MP R+ + WN+
Sbjct: 146 YAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNS 205

Query: 60  MLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           M+AGYAQ G+S  A+ LF  ++    +  +EV+MVSV+SAC HLGAL+ G W   ++  N
Sbjct: 206 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 265

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
           ++K++++   A++ MYS+CG+M  A   F  M  R+V ++ ++I G A +G G +++ L 
Sbjct: 266 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLM 325

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
           S MK+ G+ P+ VTF+ VL  C   GL+EEGR+ F+S++     +P ++HY C+VDL GR
Sbjct: 326 STMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGR 380

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
            G L++A   + +MPM+PHAG +G+LLNA R++K  E+GELA+ KL ELE  N G ++LL
Sbjct: 381 VGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILL 440

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA +  W  V  +R+ MK  GVKK  G S +E   ++H+F   D +H R ++I  +L
Sbjct: 441 SNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLL 500

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+ ++++ AGY+A+ + V+ D+EEEEKE+ +  HSEK+AI + L+  + G  IR+VKNL
Sbjct: 501 IELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNL 560

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVCWDCH   KMISK+  R IIVRD NRFH F +G CSCK YW
Sbjct: 561 RVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 8/230 (3%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            AM+S   K      A+ +FD MPER+ I W AM+ GYA+      A   F  M    V 
Sbjct: 78  NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV- 136

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
              VS  ++LS     G  ++     ++ E            A++  Y + G+++ A   
Sbjct: 137 ---VSWNAMLSGYAQNGLAEEA--LRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKL 191

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGL 205
           F  M  RNV TW S+I G A NG    ++ELF  M  A  + P+EVT VSV+  C  +G 
Sbjct: 192 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 251

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +E G      +  E  I+  +  +  ++ +Y R G +++A  V  +M  +
Sbjct: 252 LELGNWVVRFL-TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 300


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 299/461 (64%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +    ++FD +    VV   AMI    + G+V  AR++FD++ E+D   W+AM+
Sbjct: 243 YTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMI 302

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y + G   EAL+LF LMQ   V+ N  S++SVLS C  L +LD GR  H  + +++  
Sbjct: 303 KVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFD 362

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V + + L+ MY KCG++ KA   F     +++  W S+I G A +G  E++L++F  M
Sbjct: 363 SDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEM 422

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +G+  + VTFV VL  C   G V+EG E F+SM+ +Y +EP  EHY C+VDL GRAG 
Sbjct: 423 CSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGL 482

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           +++A+D+I KMP++  A  WGALL ACR + N  + E+A++KL++LE KN G Y+LLSNI
Sbjct: 483 VNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNI 542

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET-HPRYNEIEVMLGE 360
           YA    W  V  +R+ M+ K V K PGCS IEV++ VH F  G  T HP  + I  ML +
Sbjct: 543 YASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEK 602

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L+ AGY  +++ V++D++EEEK  +L  HSE++A+AFGL+ + EG+PIR++KNLRV
Sbjct: 603 LDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRV 662

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+K+  REII+RD NRFHHFK+G CSC+ YW
Sbjct: 663 CGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 168/375 (44%), Gaps = 58/375 (15%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           + C  YC  V         +   + I+  A+ G ++ AR++FDEMP++  ++WN+M+AGY
Sbjct: 6   MPCRRYCTSV--------AIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGY 57

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMT 123
            Q  + REA +LF  M     + N VS   ++S       + + R A     ERN     
Sbjct: 58  FQNNRPREARYLFDKMP----ERNTVSWNGLISGYVKNRMVSEARKAFDTMPERN----- 108

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V   TA+V  Y + G +++A   FW M E+NV +WT ++GGL      +++  LF +M  
Sbjct: 109 VVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPV 168

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
             V    V   +++ G C  G + E RE FD M R   I      +  ++  Y + G++D
Sbjct: 169 KDV----VARTNMISGYCQEGRLAEARELFDEMPRRNVIS-----WTTMISGYVQNGQVD 219

Query: 244 EALDVINKMPMKPHAGAWGALL----NACRMYKNTEM----------------------G 277
            A  +   MP K    +W A+L       R+ + +E+                      G
Sbjct: 220 VARKLFEVMPEKNEV-SWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNG 278

Query: 278 ELASRKLV--ELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK-LPG-CSVIE 333
           E+A  + V  ++  K+ G +  +  +Y         +N+  +M+ +GV+   P   SV+ 
Sbjct: 279 EVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLS 338

Query: 334 VDREVHEFFAGDETH 348
           V   +     G + H
Sbjct: 339 VCASLASLDHGRQVH 353



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 130/243 (53%), Gaps = 11/243 (4%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +FD +   DVV +T MIS   + G +  AR++FDEMP R+ I+W  M++GY Q G+   A
Sbjct: 162 LFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVA 221

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             LF +M     + NEVS  ++L   T  G +++   A    +   +K  V    A++  
Sbjct: 222 RKLFEVMP----EKNEVSWTAMLMGYTQGGRIEE---ASELFDAMPVKAVVAC-NAMILG 273

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           + + G + KA   F  ++E++  TW+++I      G   ++L LF+LM++ GV+ N  + 
Sbjct: 274 FGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSL 333

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +SVL  C  +  ++ GR+ H + ++ ++  + ++     L+ +Y + G L +A  + ++ 
Sbjct: 334 ISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVA--SVLITMYVKCGDLVKARQIFDRF 391

Query: 253 PMK 255
             K
Sbjct: 392 SPK 394



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 45/293 (15%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA +G +   ++VFD + +  +V   +M++   +      AR +FD+MPER+ ++WN ++
Sbjct: 26  YARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLI 85

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRL 120
           +GY +     EA   F  M   +V    VS  +++      G + +       + E+N +
Sbjct: 86  SGYVKNRMVSEARKAFDTMPERNV----VSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV 141

Query: 121 KMTVTLG--------------------------TALVDMYSKCGNMNKAMDFFWGMKERN 154
             TV LG                          T ++  Y + G + +A + F  M  RN
Sbjct: 142 SWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRN 201

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           V +WT++I G   NG  + + +LF +M +     NEV++ ++L G    G +EE  E FD
Sbjct: 202 VISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFD 257

Query: 215 SMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +M       P      C  ++  +G+ G + +A  V +++  K   G W A++
Sbjct: 258 AM-------PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDD-GTWSAMI 302



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   +++FD     D+V   ++I+  A+ G V+                    
Sbjct: 374 MYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVE-------------------- 413

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                      EAL +FH M    +  + V+ V VLSAC++ G + +G      ++   L
Sbjct: 414 -----------EALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYL 462

Query: 121 KMTVTLGTA-LVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
               T   A +VD+  + G +N AMD    M  E +   W +++G 
Sbjct: 463 VEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGA 508


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/452 (45%), Positives = 297/452 (65%), Gaps = 3/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  + +G+ E DV  ++A+I   AK G+ + A  +FDEM   D I WN+++ G+AQ  +
Sbjct: 182 HCGIIKEGL-ESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           S  AL LF  M+       + ++ SVL ACT L  L+ G  AHV+I +      + L  A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNA 298

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LVDMY KCG++  A+  F  MKER+V TW+++I GLA NG  +++L+LF  MK +G +PN
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +T V VL  C   GL+E+G  +F SM++ YGI+P  EHYGC++DL G+AG+LD+A+ ++
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           N+M  +P A  W  LL ACR+ +N  + E A++K++ L+ ++ G Y LLSNIYA S+ WD
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  +R  M+ +G+KK PGCS IEV++++H F  GD +HP+  E+   L ++  RL   G
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIG 538

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV  TN V+ D+E E+ ED+L  HSEK+A+AFGL++L     IRI KNLR+C DCH   K
Sbjct: 539 YVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCK 598

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           + SK+  R I++RD  R+HHF++GKCSC  YW
Sbjct: 599 LASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 130/242 (53%), Gaps = 6/242 (2%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           C+ ++   H P +     +I+   K   ++ A ++FD+MP+R+ I+W  M++ Y++C   
Sbjct: 84  CRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 143

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           ++AL L  LM   +V+ N  +  SVL +C  +  +   R  H  I +  L+  V + +AL
Sbjct: 144 QKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSAL 200

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +D+++K G    A+  F  M   +   W S+IGG A N   + +LELF  MK+AG    +
Sbjct: 201 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 260

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T  SVLR C  + L+E G +    + + Y  +  L +   LVD+Y + G L++AL V N
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVK-YDQDLILNN--ALVDMYCKCGSLEDALRVFN 317

Query: 251 KM 252
           +M
Sbjct: 318 QM 319



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWA--HVYIERNRLKMTVTLGTALVDMYSKC 137
           +Q H +  +  +   ++  C    A+ +G     H+Y   +R  M   L   L++MY K 
Sbjct: 52  LQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMF--LVNVLINMYVKF 109

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
             +N A   F  M +RNV +WT++I   +     +K+LEL  LM +  VRPN  T+ SVL
Sbjct: 110 NLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVL 169

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           R C   G+ +    H   ++   G+E  +     L+D++ + G  ++AL V ++M +   
Sbjct: 170 RSCN--GMSDVRMLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGD 224

Query: 258 AGAWGALL 265
           A  W +++
Sbjct: 225 AIVWNSII 232


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/460 (44%), Positives = 293/460 (63%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   +   +++FD +   +V     M++  A+ G +D AR +F  MP++D ++W AML
Sbjct: 365 YVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAML 424

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A Y+Q G S E L LF  M      +N  +   VLS C  + AL+ G   H  + +    
Sbjct: 425 AAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYG 484

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           +   +G AL+ MY KCG+M +A   F  M+ER+V +W ++I G A +G G+++LE+F  M
Sbjct: 485 VGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTM 544

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           ++   +P+++T V VL  C   GLVE+G  +F SM R++G+    EHY C++DL GRAGR
Sbjct: 545 RKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGR 604

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEA++++  MP +P +  WGALL A R+++N+E+G  A+ K+ ELE +N G YVLLSNI
Sbjct: 605 LDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNI 664

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W  V  +R IM  +GVKK+PG S IEV  +VH F  GD  HP   +I   L ++
Sbjct: 665 YASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDL 724

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             R+K AGYV+ T+ V++D+EEEEKE  L  HSEK+A+A+G++ +  G PIR++KNLRVC
Sbjct: 725 DIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVC 784

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K IS +  R II+RD NRFHHF++G CSC  YW
Sbjct: 785 RDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 18/260 (6%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           L   + +FD +   D V    MIS+ A  G V LAR  FD  PE+D ++WN MLA Y + 
Sbjct: 185 LADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 244

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+ +EA  LF        + + +S  ++++       +++   A     +   +  V+  
Sbjct: 245 GRIQEARELFD----SRTEWDAISWNALMAGYVQRSQIEE---AQKMFNKMPQRDVVSWN 297

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T +V  Y++ G+M +A   F     R+V+TWT+++ G A NG  E++  +F  M      
Sbjct: 298 T-MVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK--- 353

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            N V++ +++       ++EE +E FD+M     +  W      ++  Y +AG LDEA  
Sbjct: 354 -NAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-NVASW----NTMLTGYAQAGMLDEARA 407

Query: 248 VINKMPMKPHAGAWGALLNA 267
           +   MP K  A +W A+L A
Sbjct: 408 IFGMMPQK-DAVSWAAMLAA 426



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 133/279 (47%), Gaps = 34/279 (12%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   +++FD   E D +   A+++   +   ++ A+KMF++MP+RD ++WN M+
Sbjct: 241 YVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMV 300

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR------------ 109
           +GYA+ G   EA  LF +  I DV     +  +++S     G L++ +            
Sbjct: 301 SGYARRGDMAEARRLFDVAPIRDV----FTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAV 356

Query: 110 -WAHV---YIERNRLKMTVTLGTA-----------LVDMYSKCGNMNKAMDFFWGMKERN 154
            W  +   Y++R  ++    L  A           ++  Y++ G +++A   F  M +++
Sbjct: 357 SWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKD 416

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HF 213
             +W +++   +  G  E++L+LF  M + G   N   F  VL  C  +  +E G + H 
Sbjct: 417 AVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHS 476

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             ++  YG+  ++ +   L+ +Y + G ++EA     +M
Sbjct: 477 RLIKAGYGVGCFVGN--ALLAMYFKCGSMEEAHSAFEEM 513



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 140/333 (42%), Gaps = 50/333 (15%)

Query: 20  EPD--VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           +PD  V+ +   I+A  + G V  A ++F  MP R    +N MLAGYA  G+  +AL  F
Sbjct: 102 KPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF 161

Query: 78  HLM-------------------QIHDVKL--------NEVSMVSVLSACTHLGALDQGRW 110
             +                    + DV+         + VS   ++S+  + G +   R 
Sbjct: 162 RSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARH 221

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
              Y +    K  V+    ++  Y + G + +A + F    E +  +W +++ G      
Sbjct: 222 ---YFDLAPEKDAVSW-NGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQ 277

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE--H 228
            E++ ++F+ M Q  V    V++ +++ G    G + E R  FD       + P  +   
Sbjct: 278 IEEAQKMFNKMPQRDV----VSWNTMVSGYARRGDMAEARRLFD-------VAPIRDVFT 326

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           +  +V  Y + G L+EA  V + MP K +A +W A++ A   Y    M E A      + 
Sbjct: 327 WTAIVSGYAQNGMLEEAKRVFDAMPDK-NAVSWNAMMAA---YVQRRMMEEAKELFDAMP 382

Query: 289 TKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            +N  ++  +   YA++   D    +  +M  K
Sbjct: 383 CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQK 415


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/461 (45%), Positives = 301/461 (65%), Gaps = 1/461 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G LG  ++VF+ + E DVV  T MIS+ +  G V+ A  +F  +  +D + W AM
Sbjct: 191 LYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAM 249

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G+ +  +   AL  F  MQ  +V+ NE ++V VLSAC+ LGAL+ GRW H Y+ +  +
Sbjct: 250 IDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI 309

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++ + +G AL++MYS+CG++++A   F  MK+R+V T+ ++I GL+MNG   +++ELF +
Sbjct: 310 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 369

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M    +RP  VTFV VL  C   GLV+ G + F SM R+YG+EP +EHYGC+VDL GR G
Sbjct: 370 MIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVG 429

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL+EA D+I  M M P     G LL+AC+M+KN E+GE  ++ L +    + G YVLLS+
Sbjct: 430 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSH 489

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA S  W     VR  MK  G++K PGCS IEV+ E+HEF  GD  HPR   I   L E
Sbjct: 490 VYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEE 549

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++R L+L GY      V+ DIE+ EKE  L  HSE++AI +GLIS +    IR++KNLRV
Sbjct: 550 LNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRV 609

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C+DCH   K+I+K+  R+++VRDRNRFH+F+ G CSC  YW
Sbjct: 610 CYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 34/274 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q + +G H  D      ++ +C+KC  +D A ++F      +   + A++ G+   G 
Sbjct: 69  HAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 70  SREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
             +A+ L+  M +HD  L +   M S+L AC    AL +GR  H    +  L     +  
Sbjct: 128 YFDAIQLYSRM-LHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRL 186

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKE------------------------------RNVYTW 158
            ++++Y KCG +  A   F  M E                              ++   W
Sbjct: 187 RIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           T++I G   N    ++LE F  M+   VRPNE T V VL  C  +G +E GR     MR+
Sbjct: 247 TAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            + IE  L     L+++Y R G +DEA  V ++M
Sbjct: 307 -FEIELNLFVGNALINMYSRCGSIDEAQTVFDEM 339



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 114/266 (42%), Gaps = 20/266 (7%)

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L++  ++S+L    H+   +Q    H  + RN       +   L+   SKC  ++ A   
Sbjct: 47  LDQKQIISLLQRSKHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 103

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F      NVY +T++I G   +G    +++L+S M    + P+     S+L+ C     +
Sbjct: 104 FQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLAL 163

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EGRE   S   + G+         +++LYG+ G L +A  V  +MP    A     +++
Sbjct: 164 REGRE-VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST--VMIS 220

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK- 325
           +   Y +  + E A      +  K+   +  + + +  ++  +R +   + M+ + V+  
Sbjct: 221 S---YSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPN 277

Query: 326 -------LPGCS---VIEVDREVHEF 341
                  L  CS    +E+ R VH +
Sbjct: 278 EFTIVCVLSACSQLGALEIGRWVHSY 303


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 302/465 (64%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMF----DEMPERDPIA 56
           MY + GC+    +VFD + E ++    A ++  ++ G VD A ++F    D+  E + + 
Sbjct: 284 MYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVT 343

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W +++A  +Q GK  EAL LF  MQ + V+ N V++ S++ AC ++ AL  G+  H +  
Sbjct: 344 WTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSL 403

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R  +   V +G+AL+DMY+KCG +  A   F  M   N+ +W +V+ G AM+G  ++++E
Sbjct: 404 RRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETME 463

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F +M Q+G +P+ VTF  VL  C   GL EEG   ++SM  E+GIEP +EHY CLV L 
Sbjct: 464 MFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLL 523

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            R G+L+EA  +I +MP +P A  WGALL++CR++ N  +GE+A+ KL  LE  N G Y+
Sbjct: 524 SRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYI 583

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSNIYA    WD    +R++MK+KG++K PG S IEV  +VH   AGD++HP+  +I  
Sbjct: 584 LLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILE 643

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L +++ ++K +GY+  TN V+ D+EE++KE  LC HSEK+A+  GL++   G P++++K
Sbjct: 644 KLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIK 703

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH V K+IS++  REI VRD NRFHHFK+G CSC  +W
Sbjct: 704 NLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 143/300 (47%), Gaps = 43/300 (14%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM----PERDPIAWNAMLAGYAQC 67
           +K+FD + + DVV  +AMI+  ++ G V+ A+++F EM     E + ++WN MLAG+   
Sbjct: 159 RKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNN 218

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G   EA+ +F +M +     +  ++  VL A   L  +  G   H Y+ +  L     + 
Sbjct: 219 GFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVV 278

Query: 128 TALVDMYSKCG---NMNKAMD------------FFWGMK--------------------E 152
           +A++DMY KCG    M++  D            F  G+                     E
Sbjct: 279 SAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKME 338

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
            NV TWTS+I   + NG   ++LELF  M+  GV PN VT  S++  C  +  +  G+E 
Sbjct: 339 LNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEI 398

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           H  S+RR  GI   +     L+D+Y + GR+  A    +KM    +  +W A++    M+
Sbjct: 399 HCFSLRR--GIFDDVYVGSALIDMYAKCGRIQLARRCFDKMS-ALNLVSWNAVMKGYAMH 455



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 22  DVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           D    T+++S  A    +    L+  +   +P     ++++++  +A+       L  F 
Sbjct: 34  DTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFS 93

Query: 79  LMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
              +H ++L  +   + S + +C  L ALD G+  H +   +       + ++L  MY K
Sbjct: 94  --HLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLK 151

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C  +  A   F  M +R+V  W+++I G +  G  E++ ELF  M+  GV PN V++  +
Sbjct: 152 CDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGM 211

Query: 197 LRGCCVVGLVEEGREHFDSM 216
           L G    G  +E    F  M
Sbjct: 212 LAGFGNNGFYDEAVGMFRMM 231


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/443 (43%), Positives = 299/443 (67%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV  Q ++IS   KCG++ +   +F++M ER   +W+A++  +A  G   + L L   
Sbjct: 163 ENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGD 222

Query: 80  MQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M      +  E  +VSVLSACTHLGALD GR  H ++ RN   + V + T+L++MY KCG
Sbjct: 223 MSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCG 282

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++ K M  F  M ++N  +++ +I GLAM+G G + L +F+ M + G+ P+++ +V VL 
Sbjct: 283 SLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLN 342

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG + F+ M+ E+GIEP ++HYGC+VDL GRAG++DEAL++I  MPM+P+ 
Sbjct: 343 ACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPND 402

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W +LL+A +++ N + GE+A+++L +L+++    YV+LSN+YA+++ W+ V   R  M
Sbjct: 403 VLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNM 462

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
            +KG+ + PG S++EV R++H F + D  HP+   +  ML ++  +LK  GY  +T  V+
Sbjct: 463 FSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVL 522

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D++EEEK+  L  HS+K+AIA+ LI   +G PIRIV+NLR+C DCH  TK+IS +F+RE
Sbjct: 523 CDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDRE 582

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I VRDR+RFHHFK+G CSC+ YW
Sbjct: 583 ITVRDRHRFHHFKDGACSCRDYW 605



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 6/238 (2%)

Query: 22  DVVCQTAMISACAKC--GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D  C + +++ CA    G +D A  +F +M E     +N M+ G+ +   + EAL  +  
Sbjct: 62  DSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKE 121

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    VK +  +  ++L AC  L A+++G   H +I +  L+  V +  +L+ MY KCG 
Sbjct: 122 MAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGE 181

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLR 198
           +      F  M ER+V +W+++I   A  G     L L   M   G  R  E   VSVL 
Sbjct: 182 IGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLS 241

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +G ++ GR  H   +R   G+   +E    L+++Y + G L + + +  KM  K
Sbjct: 242 ACTHLGALDLGRSVHGFLLRNVSGLNVIVE--TSLIEMYLKCGSLYKGMCLFQKMAKK 297


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 301/476 (63%), Gaps = 26/476 (5%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GY  K+  G  E D   Q A++   ++ G +D++  +FD M  RD ++WN M+ GY   G
Sbjct: 424 GYAVKL--GFKE-DRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSG 480

Query: 69  KSREALHLFHLMQIHD-----------------VKLNEVSMVSVLSACTHLGALDQGRWA 111
           +   AL L H MQ  +                  K N +++++VL  C  L A+ +G+  
Sbjct: 481 RYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEI 540

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H Y  RN L   +T+G+ALVDMY+KCG +N +   F  M  +NV TW  +I    M+G G
Sbjct: 541 HAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKG 600

Query: 172 EKSLELF-SLMKQAG----VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
           E++LELF +++ +AG     +PNEVTF++V   C   GL+ EG   F  M+ ++G+EP  
Sbjct: 601 EEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTS 660

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMK-PHAGAWGALLNACRMYKNTEMGELASRKLV 285
           +HY C+VDL GRAG+L+EA +++N MP +    GAW +LL ACR+++N E+GE+A++ L+
Sbjct: 661 DHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLL 720

Query: 286 ELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGD 345
            LE      YVLLSNIY+ +  W++ + VR+ M+  GVKK PGCS IE   EVH+F AGD
Sbjct: 721 HLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGD 780

Query: 346 ETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLIS 405
            +HP+  ++   L  +S +++  GYV +T+ V+++++E+EKE+ LC HSEK+AIAFG+++
Sbjct: 781 VSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILN 840

Query: 406 LKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              G  IR+ KNLRVC DCH  TK ISK+  REIIVRD  RFHHFKEG CSC  YW
Sbjct: 841 TPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 8/260 (3%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GY  +V D           A+++  AK G VD ++ +F+   +RD ++WN M++ ++Q  
Sbjct: 221 GYSLRVGD----QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSD 276

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLG 127
           +  EAL  F LM +  V+L+ V++ SVL AC+HL  LD G+  H Y+ RN  L     +G
Sbjct: 277 RFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVG 336

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGV 186
           +ALVDMY  C  +      F  +  R +  W ++I G A NG  EK+L LF  ++K AG+
Sbjct: 337 SALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGL 396

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
            PN  T  SV+   CV       +E       + G +        L+D+Y R G++D + 
Sbjct: 397 LPNTTTMASVMPA-CVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISE 455

Query: 247 DVINKMPMKPHAGAWGALLN 266
            + + M ++    +W  ++ 
Sbjct: 456 TIFDSMEVRDRV-SWNTMIT 474



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 22/268 (8%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDV 85
           +A++     C  V+  R++FD +  R    WNAM++GYA+ G   +AL LF  ++++  +
Sbjct: 337 SALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGL 396

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             N  +M SV+ AC H  A       H Y  +   K    +  AL+DMYS+ G M+ +  
Sbjct: 397 LPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISET 456

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-----------------AGVRP 188
            F  M+ R+  +W ++I G  ++G    +L L   M++                    +P
Sbjct: 457 IFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKP 516

Query: 189 NEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           N +T ++VL GC  +  + +G+E H  ++R     +  +     LVD+Y + G L+ +  
Sbjct: 517 NAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASD--ITVGSALVDMYAKCGCLNLSRR 574

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTE 275
           V N+MP K +   W  L+ AC M+   E
Sbjct: 575 VFNEMPNK-NVITWNVLIMACGMHGKGE 601



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G     V     +++   KCG +    K+FD + +RD ++WN+ +A   +  K  +AL  
Sbjct: 122 GYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEA 181

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLG---ALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           F  MQ+ +++L+  ++VSV  AC++LG    L  G+  H Y  R   + T T   AL+ M
Sbjct: 182 FRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFT-NNALMAM 240

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+K G ++ +   F    +R++ +W ++I   + +    ++L  F LM   GV  + VT 
Sbjct: 241 YAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTI 300

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLY 236
            SVL  C  +  ++ G+E H   +R    IE        LVD+Y
Sbjct: 301 ASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVG-SALVDMY 343



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 4/199 (2%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P R   +W   L    +    REA+  +  M +   + +  +  +VL A + L  L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 110 WAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
             H   ++      +VT+   LV+MY KCG +      F  + +R+  +W S I  L   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWL 226
              E++LE F  M+   +  +  T VSV   C  +G++   R  +         G +   
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232

Query: 227 EHYGCLVDLYGRAGRLDEA 245
            +   L+ +Y + GR+D++
Sbjct: 233 TN-NALMAMYAKLGRVDDS 250


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/441 (45%), Positives = 289/441 (65%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A++   AK G VD AR +F+ +P  D I+WN +++GYAQ G + EA+ ++++M+
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442

Query: 82  IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              ++  N+ + VSVL AC+  GAL QG   H  + +N L + V + T+L DMY KCG +
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A+  F+ +   N   W ++I     +G GEK++ LF  M   GV+P+ +TFV++L  C
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV+EG+  F+ M+ +YGI P L+HYGC+VD+YGRAG+L+ AL  I  M ++P A  
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL+ACR++ N ++G++AS  L E+E ++ G +VLLSN+YA +  W+ V  +R I   
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           KG++K PG S +EVD +V  F+ G++THP Y E+   L  +  +LK+ GYV +   V+ D
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +E++EKE  L  HSE++AIAF LI+      IRI KNLRVC DCH VTK ISK+  REII
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFHHFK G CSC  YW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++I   ++   V  AR +FDEMP RD  +WNAM++GY Q G ++EAL L + ++
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D     V++VS+LSACT  G  ++G   H Y  ++ L+  + +   L+D+Y++ G + 
Sbjct: 244 AMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  M  R++ +W S+I    +N    +++ LF  M+ + ++P+ +T +S+     
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            +G +   R     ++R+ + +E  +     +V +Y + G +D A  V N +P
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLED-ITIGNAVVVMYAKLGLVDSARAVFNWLP 411



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 149/282 (52%), Gaps = 5/282 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++     +I   A+ G +   +K+FD M  RD I+WN+++  Y    +   A+ LF  
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM-TVTLGTALVDMYSKCG 138
           M++  ++ + ++++S+ S  + LG +   R    +  R    +  +T+G A+V MY+K G
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 398

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVL 197
            ++ A   F  +   +V +W ++I G A NG   +++E++++M++ G +  N+ T+VSVL
Sbjct: 399 LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVL 458

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   G + +G +    + +  G+   +     L D+YG+ GRL++AL +  ++P + +
Sbjct: 459 PACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVN 516

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLL 298
           +  W  L+     + + E   +  +++++   K +H  +V L
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 558



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 24  VCQTA-MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           VC +A +++     G+V LAR  FD +  RD  AWN M++GY + G S E +  F L  +
Sbjct: 86  VCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 145

Query: 83  HD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  +  +  SVL AC     +  G   H    +      V +  +L+ +YS+   + 
Sbjct: 146 SSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 202

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGC 200
            A   F  M  R++ +W ++I G   +G  +++L L       G+R  + VT VS+L  C
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSAC 257

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G    G     S   ++G+E  L     L+DLY   GRL +   V ++M ++    +
Sbjct: 258 TEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLI-S 315

Query: 261 WGALLNA 267
           W +++ A
Sbjct: 316 WNSIIKA 322



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++   CT+L      +  H  +  ++    V +   LV++Y   GN+  A   F  ++ R
Sbjct: 59  TLFRYCTNL---QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSL-MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           +VY W  +I G    G   + +  FSL M  +G+ P+  TF SVL+ C  V  ++  + H
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV--IDGNKIH 173

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             +++  +  + ++     L+ LY R   +  A  + ++MP++   G+W A+++ 
Sbjct: 174 CLALKFGFMWDVYVA--ASLIHLYSRYKAVGNARILFDEMPVRD-MGSWNAMISG 225


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/442 (45%), Positives = 287/442 (64%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D     ++I    KCG V+ A ++F+E P  D + + +++  YAQ G+  EAL L+  
Sbjct: 345 EFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLE 404

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +K +     S+L+AC  L A +QG+  HV+I +      +  G +LV+MY+KCG+
Sbjct: 405 MQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGS 464

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  +  R + +W+++IGGLA +G G+++L+LF  M + GV PN +T VSVL  
Sbjct: 465 IEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCA 524

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV E + +F+SM+  +GIEP  EHY C++DL GRAG+L+ A++++NKMP + +A 
Sbjct: 525 CNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANAL 584

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL A R++KN ++GE A+  L+ LE +  G +VLL+NIYA    WD+V  VR++MK
Sbjct: 585 VWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMK 644

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
              VKK PG S +EV  +V+ F  GD +H R  EI   L E+S  LK AGYV      ++
Sbjct: 645 DGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLH 704

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E  EKE  L  HSEK+A+AFGLI+   G PIR+ KNLR+C+DCH V K ISK+ +REI
Sbjct: 705 DVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREI 764

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHF+EG CSC  YW
Sbjct: 765 IVRDTNRFHHFREGSCSCGEYW 786



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 8/264 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D     +++   AKCG    AR +FD +P+R  ++WNA+ + Y       EA+ LFH 
Sbjct: 42  DSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHD 101

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  ++ NE S+ S+++ CT L    QGR  H Y+ +           ALVDMY+K G 
Sbjct: 102 MVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGI 161

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + + ++ +W ++I G  ++    ++LEL   M ++G+ PN  T  S L+ 
Sbjct: 162 LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKA 221

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMKPH 257
           C  + L E GR+ H   ++ + G + +L   G  L+D+Y +   +D+A  V   MP +  
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFL---GVGLIDMYSKCNSMDDARLVFKLMPERDM 278

Query: 258 AGAWGALLNACRMYKNTEMGELAS 281
             AW A+++     +N E  E AS
Sbjct: 279 I-AWNAVISGHS--QNEEDEEAAS 299



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 127/245 (51%), Gaps = 4/245 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      +I   +KC  +D AR +F  MPERD IAWNA+++G++Q  +  EA  LF LM 
Sbjct: 246 DSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMH 305

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  N+ ++ +VL +   L A    R  H    ++  +    +  +L+D Y KCG++ 
Sbjct: 306 TEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVE 365

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F      ++  +TS++   A +G GE++L L+  M+  G++P+     S+L  C 
Sbjct: 366 DATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACA 425

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +   E+G++ H   ++  +G    +     LV++Y + G +++A    +++P++    +
Sbjct: 426 SLSAYEQGKQVHVHILK--FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIV-S 482

Query: 261 WGALL 265
           W A++
Sbjct: 483 WSAMI 487



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 7/273 (2%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D     A++   AK G ++ A  +FDE+ + D ++WNA++AG         AL L  
Sbjct: 142 YDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLR 201

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    +  N  ++ S L AC  +   + GR  H  + +  +     LG  L+DMYSKC 
Sbjct: 202 EMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCN 261

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +M+ A   F  M ER++  W +VI G + N   E++  LF LM   G+  N+ T  +VL+
Sbjct: 262 SMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLK 321

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               +      R+ H  S++  +  + ++     L+D YG+ G +++A  V  + P+   
Sbjct: 322 SIAALQANYMCRQIHALSLKSGFEFDNYV--VNSLIDTYGKCGHVEDATRVFEESPIVDL 379

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETK 290
              + +L+ A   Y     GE A R  +E++ +
Sbjct: 380 V-LFTSLVTA---YAQDGQGEEALRLYLEMQDR 408



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 4/194 (2%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +K NE +  SVL ACT    L  G+  H  +          +  +LV +Y+KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
              A   F  + +R+V +W ++      +    +++ LF  M  +G+RPNE +  S++  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +    +GR+ H   ++  Y  + +  +   LVD+Y + G L++A  V +++  KP  
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSAN--ALVDMYAKVGILEDASSVFDEIA-KPDI 177

Query: 259 GAWGALLNACRMYK 272
            +W A++  C +++
Sbjct: 178 VSWNAIIAGCVLHE 191


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/453 (43%), Positives = 286/453 (63%), Gaps = 3/453 (0%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GYC K     H       TA+ +  +K  +++ ARK+FDE PE+   +WNAM++GY Q G
Sbjct: 343 GYCLKSNFLSHAS---VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            + +A+ LF  MQ  +   N V++  +LSAC  LGAL  G+W H  +     + ++ + T
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL+ MY+KCG++ +A   F  M ++N  TW ++I G  ++G G+++L +F  M  +G+ P
Sbjct: 460 ALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITP 519

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
             VTF+ VL  C   GLV+EG E F+SM   YG EP ++HY C+VD+ GRAG L  AL  
Sbjct: 520 TPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQF 579

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I  M ++P +  W  LL ACR++K+T +    S KL EL+  N G +VLLSNI++  +N+
Sbjct: 580 IEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNY 639

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
            +   VRQ  K + + K PG ++IE+    H F +GD++HP+  EI   L ++  +++ A
Sbjct: 640 PQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREA 699

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GY   T   ++D+EEEE+E  +  HSE++AIAFGLI+ + G  IRI+KNLRVC DCH VT
Sbjct: 700 GYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVT 759

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+ISK+  R I+VRD NRFHHFK+G CSC  YW
Sbjct: 760 KLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 5/240 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T  IS  +KCG + +   +F E  + D +A+NAM+ GY   G++  +L LF  + +   +
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L   ++VS++    HL  +      H Y  ++      ++ TAL  +YSK   +  A   
Sbjct: 320 LRSSTLVSLVPVSGHLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F    E+++ +W ++I G   NG  E ++ LF  M+++   PN VT   +L  C  +G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGAL 436

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G+   D + R    E  +     L+ +Y + G + EA  + + M  K     W  +++
Sbjct: 437 SLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMIS 494



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 126/303 (41%), Gaps = 42/303 (13%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q V DG  + +++  + ++    K   V+ ARK+FD MPE+D I WN M++GY +     
Sbjct: 144 QAVVDGC-DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYV 202

Query: 72  EALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           E++ +F  L+     +L+  +++ +L A   L  L  G   H    +        + T  
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + +YSKCG +      F   ++ ++  + ++I G   NG  E SL LF  +  +G R   
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322

Query: 191 VTFVSV------------LRGCCV--------------------VGLVEEGREHFDSMRR 218
            T VS+            + G C+                    +  +E  R+ FD    
Sbjct: 323 STLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDE--- 379

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNACRMYKNTE 275
               E  L  +  ++  Y + G  ++A+ +  +M      P+      +L+AC       
Sbjct: 380 --SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALS 437

Query: 276 MGE 278
           +G+
Sbjct: 438 LGK 440



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 110/270 (40%), Gaps = 5/270 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q +  G    D+   T +    +  G +  AR +F  +   D   +N ++ G++    
Sbjct: 40  HAQIILHGFRN-DISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNES 98

Query: 70  SREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
              +L +F HL +  D+K N  +    +SA +       GR  H     +     + LG+
Sbjct: 99  PHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGS 158

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVR 187
            +V MY K   +  A   F  M E++   W ++I G   N    +S+++F  L+ ++  R
Sbjct: 159 NIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTR 218

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            +  T + +L     +  +  G +   S+  + G           + LY + G++     
Sbjct: 219 LDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA 277

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMG 277
           +  +   KP   A+ A+++       TE+ 
Sbjct: 278 LFREF-RKPDIVAYNAMIHGYTSNGETELS 306


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 280/436 (64%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
            TA+ +  +K  +++ ARK+FDE PE+   +WNAM++GY Q G + +A+ LF  MQ  + 
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEF 416

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             N V++  +LSAC  LGAL  G+W H  +     + ++ + TAL+ MY+KCG++ +A  
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ++N  TW ++I G  ++G G+++L +FS M  +G+ P  VTF+ VL  C   GL
Sbjct: 477 LFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGL 536

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V+EG E F+SM   YG EP ++HY C+VD+ GRAG L  AL  I  MP++P    W  LL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLL 596

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++K+T +    S KL EL+  N G +VLLSNI++  +N+ +   VRQ  K + + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG ++IE+    H F +GD++HP+   I   L ++  +++ AGY   T   ++D+EEEE
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEE 716

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           +E  +  HSE++AIAFGLI+ + G  IRI+KNLRVC DCH  TK+ISK+  R I+VRD N
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDAN 776

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSC  YW
Sbjct: 777 RFHHFKDGVCSCGDYW 792



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 5/240 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T  IS  +KCG + +A  +F E    D +A+NAM+ GY   G++  +L LF  + +   K
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L   ++VS++    HL  +      H Y  ++      ++ TAL  +YSK   +  A   
Sbjct: 320 LKSSTLVSLVPVSGHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKL 376

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F    E+++ +W ++I G   NG  E ++ LF  M+ +   PN VT   +L  C  +G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGAL 436

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G+   D + R    E  +     L+ +Y + G + EA  + + MP K     W  +++
Sbjct: 437 SLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEV-TWNTMIS 494



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 13/265 (4%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           GC+ + Q + DG  + +++  + ++    K   V+ ARK+FD MPE+D I WN M++GY 
Sbjct: 138 GCVIHGQAIVDGC-DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYR 196

Query: 66  QCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           +     E++ +F  L+     +L+  +++ +L A   L  L  G   H    +       
Sbjct: 197 KNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD 256

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            + T  + +YSKCG +  A   F   +  ++  + ++I G   NG  E SL LF  +  +
Sbjct: 257 YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG---CLVDLYGRAGR 241
           G +    T VS++     + L+     H  S++  +     L H      L  +Y +   
Sbjct: 317 GAKLKSSTLVSLVPVSGHLMLIYA--IHGYSLKSNF-----LSHTSVSTALTTVYSKLNE 369

Query: 242 LDEALDVINKMPMKPHAGAWGALLN 266
           ++ A  + ++ P K    +W A+++
Sbjct: 370 IESARKLFDESPEKS-LPSWNAMIS 393



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 3   AELGCLGYCQKVFDGIHEPD----VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+LG L   + V D +   D    +   TA+I   AKCG +  AR++FD MP+++ + WN
Sbjct: 431 AQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWN 490

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIER 117
            M++GY   G  +EAL +F  M    +    V+ + VL AC+H G + +G    +  I R
Sbjct: 491 TMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
              + +V     +VD+  + G++ +A+ F   M  +     W +++G 
Sbjct: 551 YGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGA 598



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 106/277 (38%), Gaps = 35/277 (12%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           ++LG + Y + +F  +  PDV                                 +N ++ 
Sbjct: 63  SDLGAIYYARDIFLSVQRPDVFL-------------------------------FNVLMR 91

Query: 63  GYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           G++       +L +F HL +  D+K N  +    +SA +       G   H     +   
Sbjct: 92  GFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCD 151

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SL 180
             + LG+ +V MY K   +  A   F  M E++   W ++I G   N    +S+++F  L
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           + ++  R +  T + +L     +  +  G +   S+  + G           + LY + G
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVLTGFISLYSKCG 270

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
           ++  A  +  +   +P   A+ A+++       TE+ 
Sbjct: 271 KIKMASTLFREF-RRPDIVAYNAMIHGYTSNGETELS 306


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/443 (47%), Positives = 286/443 (64%), Gaps = 38/443 (8%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++V   +M+S   KCG+V+ A  +F EMP RD ++WN+MLA YAQCGK  EAL LF  
Sbjct: 3   ERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQ 62

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   V +N +                                   +GTALVDMY+KCG 
Sbjct: 63  MQA--VGVNSI-----------------------------------VGTALVDMYAKCGK 85

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  M+ ++V  W ++I G+A+ G  +++ +LF  MK+AGV PN++TFV++L  
Sbjct: 86  ISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSA 145

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+V+EG++  D M   YGIEP +EHYGC++DL  RAG L+EA+++I  MPM+P+  
Sbjct: 146 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPC 205

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           A GALL  CR++ N E+GE+  ++L+ L+  + G Y+LLSNIYA +K WD    VR +MK
Sbjct: 206 ALGALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMK 265

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA-GYVANTNPVM 378
             G+ K+PG SVIE+   VH F AGD +HP  N+I   L EI  RLK A GY A+T   +
Sbjct: 266 VNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNGL 325

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+EEE+KE  L  HSEK+AIA+GL+ L     IRIVKNLRVC DCH VTK+ISKV+  E
Sbjct: 326 LDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGGE 385

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRDRNRFHHF++G+CSC  +W
Sbjct: 386 IIVRDRNRFHHFEDGECSCLDFW 408



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 118/254 (46%), Gaps = 39/254 (15%)

Query: 2   YAELGCLGYCQKVFDGIHEPDV--VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           YA+ G       +FD +    V  +  TA++   AKCG + LA ++F+ M  +D +AWN 
Sbjct: 47  YAQCGKPNEALALFDQMQAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNT 106

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++AG A  G  +EA  LF  M+   V+ N+++ V++LSAC+H G +D+G+          
Sbjct: 107 IIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQ---------- 156

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                     L+D           M   +G+ E  V  +  VI  LA  G  E+++EL  
Sbjct: 157 ---------KLLD----------CMSSSYGI-EPKVEHYGCVIDLLARAGLLEEAMELIG 196

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGR 238
            M    + PN     ++L GC + G  E G       +R   ++P     Y  L ++Y  
Sbjct: 197 TMP---MEPNPCALGALLEGCRIHGNFELGEM---VGKRLINLQPCHSGRYILLSNIYAA 250

Query: 239 AGRLDEALDVINKM 252
           A + D+A  V N M
Sbjct: 251 AKKWDDARKVRNLM 264


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/440 (44%), Positives = 291/440 (66%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   +A++   A+CG +D+A  +FD++  ++ ++WNA++AG+A+ G     L +F  MQ
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  +    +  SV SA   +GAL+QG+W H ++ ++  +++  +G  ++DMY+K G+M 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +++V TW S++   A  G G +++  F  M++ GV  N++TF+S+L  C 
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EG+++FD M +EY +EP ++HY  +VDL GRAG L++AL  I KMPMKP A  W
Sbjct: 379 HGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 437

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL +CRM+KN ++G+ A+  + EL+  + G  VLL NIYA +  WD    VR++MKA 
Sbjct: 438 GALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKAT 497

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK P CS +E++  VH F A D+THPR  EI     EIS +++ AGYV NT+ V+  +
Sbjct: 498 GVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHV 557

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +E+E++  L  HSEK+A+AF LI++  G  IRI+KN+R+C DCH   + ISKVF REI+V
Sbjct: 558 DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVV 617

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF  G CSC  YW
Sbjct: 618 RDTNRFHHFSSGSCSCGDYW 637



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 4/250 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V    ++I    KCG V  AR++FD MP RD  +W +++AGYAQ     EAL L   M  
Sbjct: 99  VFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLR 158

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
              K N  +  S+L A     +   G   H    +      V +G+AL+DMY++CG M+ 
Sbjct: 159 GRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDM 218

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A+  F  ++ +N  +W ++I G A  G GE +L +F+ M++ G      T+ SV      
Sbjct: 219 AIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAG 278

Query: 203 VGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           +G +E+G+  H   ++    +  ++ +   ++D+Y ++G + +A  V +++  K     W
Sbjct: 279 IGALEQGKWVHAHMIKSGERLSAFVGN--TILDMYAKSGSMIDARKVFDRVD-KKDVVTW 335

Query: 262 GALLNACRMY 271
            ++L A   Y
Sbjct: 336 NSMLTAFAQY 345



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+++AC    +LD  R  H ++  ++   +V L  +L+ +Y KCG +  A   F GM  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           ++ +WTS+I G A N   +++L L   M +   +PN  TF S+L+          G E  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG-EQI 187

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            ++  +Y     +     L+D+Y R GR+D A+ V +++  K +  +W AL+
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALI 238



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + DVV   +M++A                            
Sbjct: 310 MYAKSGSMIDARKVFDRVDKKDVVTWNSMLTA---------------------------- 341

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
              +AQ G  REA+  F  M+   V LN+++ +S+L+AC+H G + +G+     ++   L
Sbjct: 342 ---FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNL 398

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMN 168
           +  +     +VD+  + G +N A+ F + M  +     W +++G   M+
Sbjct: 399 EPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/465 (44%), Positives = 305/465 (65%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +G  +K+FD +   D+    A+I+   K G++ +A  +F+ M  R+ ++W AM
Sbjct: 225 MYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAM 284

Query: 61  LAGYAQCGKSREALHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           ++GY Q G + +AL LF   L    ++K N V++VSVL AC    AL++GR  H +    
Sbjct: 285 ISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGI 344

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLE 176
            L +  ++ TAL  MY+KC ++ +A   F  + +  +N+  W ++I   A +G G +++ 
Sbjct: 345 GLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVS 404

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F  M +AGV+P+ VTF+ +L GC   GL++ G  HF+ M   + +EP +EHY C+VDL 
Sbjct: 405 IFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLL 464

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAGRL EA ++I++MPM+     WGALL ACR ++N E+ ELA+R+L  LE  N G YV
Sbjct: 465 GRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYV 524

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSN+YAE+  W+ V  +R ++K +G+KK PGCS IE++ + H F   D++HP+  EI  
Sbjct: 525 LLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYK 584

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L  +  ++K+AGY+ +T+ V++DI EEEKE  L  HSEK+AIAFGL++ + GV +R+ K
Sbjct: 585 FLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTK 644

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH  TK ISK++ REIIVRD NRFH FK+G CSC  YW
Sbjct: 645 NLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 107/249 (42%), Gaps = 37/249 (14%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           + +LG   + Q V  G+ +P+      M++  A  GD+D A  +FD +     + +N+++
Sbjct: 92  FIKLGQQAHAQIVLHGL-QPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSII 150

Query: 62  AGYAQCGKSREA---LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
             Y + G        L  +  M    +  +  ++  VL +C  L  +  GR  H    R 
Sbjct: 151 RAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRV 210

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAM-------------------------------DFF 147
            L+    +G +L+DMY KCG +  A                                D F
Sbjct: 211 GLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLF 270

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPNEVTFVSVLRGCCVVGL 205
             M+ RN+ +WT++I G   NG  E++L LF  M Q G  ++PN VT VSVL  C     
Sbjct: 271 ERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAA 330

Query: 206 VEEGREHFD 214
           +E GR   D
Sbjct: 331 LERGRRIHD 339



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 115/275 (41%), Gaps = 23/275 (8%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           S   +    T    +  G+ AH  I  + L+    L   +V MY+  G+++ A+  F  +
Sbjct: 79  SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRI 138

Query: 151 KERNVYTWTSVIGGLAMNG---AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
              +   + S+I     +G        LE ++ M   G+  +  T   VL+ C  +  V 
Sbjct: 139 DNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVC 198

Query: 208 EGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            GR  H   +R   G+E        L+D+Y + G + +A  + +KM ++  A +W AL+ 
Sbjct: 199 MGRCVHGQGLR--VGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMA-SWNALIA 255

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG---- 322
                K  E+G +A      +E +N  ++  + + Y ++   ++ + +   M   G    
Sbjct: 256 G--YMKEGEIG-VAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMK 312

Query: 323 ------VKKLPGC---SVIEVDREVHEFFAGDETH 348
                 V  LP C   + +E  R +H+F  G   H
Sbjct: 313 PNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/370 (51%), Positives = 261/370 (70%)

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           M  +L AC  + AL+QG+  H  I +   ++ V++   LVDMY KCG +  A + F  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           E +V +W ++I GLA +G G++++ LF  M Q GV+PN++TFV VL GC   GLV+EGR 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +FDSM R++GI P  EHY C+VDL+GRAG LDEAL+ IN+MP++P+A  WG+LL ACR++
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSV 331
            N E+ E A  +L+EL  +N G YVLLSNIYA +  WD    VR++MK + VKK PGCS 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 332 IEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLC 391
           IEV  +VH F  GD +HP+  EI   L  ++ ++K AGY+ NTN V++D+EEE+KE  L 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 392 KHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451
            HSEK+AIAFG+IS   G  IR+VKNLRVC DCH  TK IS++ +REI++RD +RFHHFK
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 452 EGKCSCKGYW 461
           +G+CSC  YW
Sbjct: 361 DGQCSCGDYW 370


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/429 (46%), Positives = 285/429 (66%)

Query: 33  CAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92
           C   G V   R +FD MP+RD I+W+AM+AGY+Q G S EALH F  MQ    +LN  S 
Sbjct: 124 CLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSF 183

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
              LS C+++ AL+ GR  H  + +   +    +G AL+ MY KCG++++A D F  + E
Sbjct: 184 TCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILE 243

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           ++V +W ++I G A +G GE++L +F LMK  G+RP++ T VSVL  C   GLV++G E+
Sbjct: 244 KDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEY 303

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
           F SM R+YGI   L HY C+VDL GRAG+L+EA +++  MP +P A  WGALL A R++ 
Sbjct: 304 FYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHG 363

Query: 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVI 332
           NTE+GE A++ + E+E  N G Y+LLS +YA S  W     +R  M+ KGVKK+PG S +
Sbjct: 364 NTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWL 423

Query: 333 EVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCK 392
           EV  ++H F  GD +HP  ++I   L E+  +LK  GY+++TN V +D+EEEEK   L  
Sbjct: 424 EVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKY 483

Query: 393 HSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
           HSEK+A+A+G++ +  G PIR++KNLRVC DCH+  K ISK+  R II+RD +RFH+F+ 
Sbjct: 484 HSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEG 543

Query: 453 GKCSCKGYW 461
           G CSC+ +W
Sbjct: 544 GSCSCRDFW 552



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 129/258 (50%), Gaps = 17/258 (6%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            + +FD + E D+     M++   +  D+  AR +F+ MPERD ++WNAML+GYAQ G  
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFV 73

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EA  +F+ M +     N +S   +L+A    G ++  +     +  +++  T+     L
Sbjct: 74  DEAREIFYKMPLK----NGISWNGLLAAYVQNGRIEDAK----RLFESKMDWTLVSWNCL 125

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +      G + K  + F  M +R+  +W+++I G + NG  E++L  F  M++   R N 
Sbjct: 126 MG-----GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 191 VTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +F   L  C  +  +E GR+ H   ++  Y    ++ +   L+ +Y + G +DEA D  
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGN--ALLAMYCKCGSIDEARDAF 238

Query: 250 NKMPMKPHAGAWGALLNA 267
            ++ ++    +W  +++ 
Sbjct: 239 QEI-LEKDVVSWNTMIHG 255



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 103/186 (55%), Gaps = 10/186 (5%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   +C+ V  G ++       A+++   KCG +D AR  F E+ E+D ++WN M+ G
Sbjct: 197 ELGRQLHCRLVKAG-YQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHG 255

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR---L 120
           YA+ G   EAL +F LM+   ++ ++ +MVSVL+AC+H G +DQG  +  +   NR   +
Sbjct: 256 YARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQG--SEYFYSMNRDYGI 313

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG---AGEKSLE 176
              +   T +VD+  + G + +A +    M  E +  TW +++G   ++G    GEK+ +
Sbjct: 314 TAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQ 373

Query: 177 LFSLMK 182
           +   M+
Sbjct: 374 IIFEME 379


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 287/445 (64%), Gaps = 6/445 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           +V   A+I   +KC     AR +F+ +P  ER+ + W  M+ GYAQ G S +AL LF  M
Sbjct: 442 LVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEM 501

Query: 81  --QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA--LVDMYSK 136
             + + V  N  ++  +L AC HL +L  G+  H Y+ R+    +     A  L+DMYSK
Sbjct: 502 ISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSK 561

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG+++ A + F  M +RN  +WTS++ G  M+G G+++L++F  M++AG  P++++F+ +
Sbjct: 562 CGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVL 621

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G+V++G ++FD MR +YG+    +HY C++DL  R+GRLD+A   I +MPM+P
Sbjct: 622 LYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEP 681

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  W ALL+ACR++ N E+ E A  KLV ++ +N G+Y L+SNIYA ++ W  V  +RQ
Sbjct: 682 SAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQ 741

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +MK  G+KK PGCS ++  +    FF GD +HP   EI  +L  +  R+K+ GYV  TN 
Sbjct: 742 LMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNF 801

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            ++D+++EEK + L +HSEK+A+A+GL++   G PIRI KNLRVC DCH     ISK+ +
Sbjct: 802 ALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVD 861

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
            EIIVRD +RFHHFK G CSC GYW
Sbjct: 862 HEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 22/291 (7%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
           YA+ G +     VF+ +   DVV   AM++   + G    A ++F  M +     D I W
Sbjct: 304 YAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITW 363

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           +A++AGYAQ G  +EAL  F  M ++  + N V+++S+LSAC  LGAL QG   H Y  +
Sbjct: 364 SAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLK 423

Query: 118 NRL------------KMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIG 163
             L               + +  AL+DMYSKC +   A   F  +  +ERNV TWT +IG
Sbjct: 424 KCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIG 483

Query: 164 GLAMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           G A  G    +L+LFS M  K   V PN  T   +L  C  +  +  G++    + R + 
Sbjct: 484 GYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHE 543

Query: 222 IEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            E  +     CL+D+Y + G +D A +V + MP K +  +W ++++   M+
Sbjct: 544 YESSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 55/291 (18%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHL 76
           E +V    A+++  ++ G ++ A  +FDE+  +   D I+WN+++A + +    R AL L
Sbjct: 181 ESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDL 240

Query: 77  FHLMQ--IHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           F  M   +H+   NE    +S+V++L AC  L AL Q +  H Y  RN       +  AL
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNAL 300

Query: 131 VDMYSKCGNMNKAMDFF----------W---------------------GMKERN----V 155
           +D Y+KCG+M  A++ F          W                      M++ N    V
Sbjct: 301 IDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDV 360

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFD 214
            TW++VI G A  G G+++L+ F  M   G  PN VT +S+L  C  +G + +G E H  
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420

Query: 215 SMRR----------EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           S+++            G    L  +  L+D+Y +      A  + N +P +
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRR 471



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 111/250 (44%), Gaps = 13/250 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++++   CG    A  + + +     + WN ++  + + G+   A+ +   M     K
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  ++   L AC  L +   G   H  I  N  +  V +  ALV MYS+ G++  A   
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 147 FWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLM------KQAGVRPNEVTFVSVL 197
           F  +  +   +V +W S++           +L+LFS M      K    R + ++ V++L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNIL 266

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +  + + +E H  ++R     + ++ +   L+D Y + G + +A++V N M  K 
Sbjct: 267 PACASLKALPQTKEIHSYAIRNGTFADAFVCN--ALIDTYAKCGSMKDAVNVFNVMEFK- 323

Query: 257 HAGAWGALLN 266
              +W A++ 
Sbjct: 324 DVVSWNAMVT 333



 Score = 38.9 bits (89), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
           +LGT +V  Y  CG  + A+     +       W  ++      G  ++++ +   M +A
Sbjct: 84  SLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRA 143

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G +P+  T    L+ C  +     G   F  +    G E  +     LV +Y R+G L++
Sbjct: 144 GTKPDHFTLPYALKACGELPSYRSGSA-FHGLICCNGFESNVFVCNALVAMYSRSGSLED 202

Query: 245 ALDVINKMPMK 255
           A  V +++  K
Sbjct: 203 ASLVFDEITRK 213


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/436 (46%), Positives = 288/436 (66%), Gaps = 4/436 (0%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I   +KCG+V+ A  +F  + ++D I+WN ++ G+      +EAL LF  M       N
Sbjct: 238 LIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPN 297

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAMD 145
           +V+M+SVL AC HLGA+D GRW HVYI + RLK      +L T+L+DMY+KCG++  A  
Sbjct: 298 DVTMLSVLPACAHLGAIDIGRWIHVYINK-RLKGVTNASSLLTSLIDMYAKCGDIEAAKQ 356

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  R++ +W ++I G AM+G    + +LFS M++ G+ P+++TFV +L  C   G+
Sbjct: 357 VFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGM 416

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++ GR  F SM ++Y I P LEHYGC++DL G  G   EA ++I  MPM+P    W +LL
Sbjct: 417 LDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLL 476

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            AC+M+ N E+GE  ++ L+++E +N G+YVLLSNIYA +  WD+V  +R ++  KG+KK
Sbjct: 477 KACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKK 536

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   ++  G+V +T+ V+ ++EEE 
Sbjct: 537 APGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEW 596

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII RDR 
Sbjct: 597 KEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRT 656

Query: 446 RFHHFKEGKCSCKGYW 461
           R H  K+G  SC  YW
Sbjct: 657 RLHLLKDGVWSCHDYW 672



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 153/272 (56%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L    KVFD      VV  TA+I+  A  G ++ ARK+FDE+  +D ++WNAM
Sbjct: 109 MYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAM 168

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY +    +EAL L+  M   +VK +E +MV+V+SAC   G+++ GR  H +IE +  
Sbjct: 169 ISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGF 228

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +   L+D+YSKCG +  A   F G+ +++V +W ++IGG       +++L LF  
Sbjct: 229 GSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQE 288

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +SVL  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 289 MLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKC 348

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V + M  +    +W A++    M+
Sbjct: 349 GDIEAAKQVFDSMLTRS-LSSWNAMIFGFAMH 379



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 44/243 (18%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     +  T++I   AKCGD++ A+++FD M  R   +WNAM+ G+A  GK
Sbjct: 323 YINKRLKGVTNASSLL-TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGK 381

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLG- 127
           +  A  LF  M+ + +  ++++ V +LSAC+H G LD GR  H++   ++  K+T  L  
Sbjct: 382 ANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR--HIFRSMSQDYKITPKLEH 439

Query: 128 -TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
              ++D+   CG   +A +                                  +++   +
Sbjct: 440 YGCMIDLLGHCGLFKEAKE----------------------------------MIRTMPM 465

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEA 245
            P+ V + S+L+ C +   VE G  +  ++ +   IEP     Y  L ++Y  AGR D+ 
Sbjct: 466 EPDGVIWCSLLKACKMHNNVELGESYAQNLIK---IEPENPGSYVLLSNIYATAGRWDQV 522

Query: 246 LDV 248
             +
Sbjct: 523 AKI 525



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 119/270 (44%), Gaps = 26/270 (9%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA-- 65
           L Y   +F+ I EP+++    M    A   D   A K++  M     I+   +   Y+  
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCM-----ISLGLLPNSYSFP 69

Query: 66  ----QCGKSREALHLFHLMQIH------DVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
                C KS+    L    QIH         L+     S++S     G L+    AH   
Sbjct: 70  FLLKSCAKSKA---LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLED---AHKVF 123

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           +R+  +  V+  TAL+  Y+  G +N A   F  +  ++V +W ++I G       +++L
Sbjct: 124 DRSSHRHVVSY-TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           EL+  M +  V+P+E T V+V+  C   G +E GR+   S   ++G    ++    L+DL
Sbjct: 183 ELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDL 241

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           Y + G ++ A  +   +  K    +W  L+
Sbjct: 242 YSKCGEVETACGLFQGLA-KKDVISWNTLI 270



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 105/218 (48%), Gaps = 24/218 (11%)

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F  ++E N+  W ++  G A+N     +L+L+  M   G+ PN  +F  +L+ 
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C     + EG++ H   ++  Y ++ ++     L+ +Y + GRL++A  V ++   + H 
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVN--TSLISMYAQNGRLEDAHKVFDRSSHR-HV 131

Query: 259 GAWGALLN--ACRMYKNTEMGELASRKLV-ELETKNHGAYVLLSNIYAESKNWDRVINVR 315
            ++ AL+   A R Y N       +RKL  E+  K+  ++  + + Y E+ N+   + + 
Sbjct: 132 VSYTALITGYASRGYINN------ARKLFDEISVKDVVSWNAMISGYVETCNFKEALELY 185

Query: 316 QIMKAKGVKK--------LPGCS---VIEVDREVHEFF 342
           + M    VK         +  C+    IE+ R++H + 
Sbjct: 186 KDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI 223


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/445 (45%), Positives = 292/445 (65%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E ++   T ++   AK G V  A  +F  MP ++ ++W+AM+A +A+     +AL LF 
Sbjct: 214 YEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQ 273

Query: 79  LMQIH--DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           LM     +   N V+MV++L AC  L AL+QG+  H YI R +L   + +  AL+ MY +
Sbjct: 274 LMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGR 333

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +      F  MK+R+V +W S+I    M+G G+K++++F  M   GV P+ ++F++V
Sbjct: 334 CGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITV 393

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLVEEG+  F+SM  +Y I P +EHY C+VDL GRA RL EA+ +I  M  +P
Sbjct: 394 LGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEP 453

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               WG+LL +CR++ N E+ E AS  L ELE +N G YVLL++IYAE+K W    +V +
Sbjct: 454 GPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMK 513

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +++A+G++KLPGCS IEV R+V+ F + DE +P+  EI  +L ++S  +K  GYV  TN 
Sbjct: 514 LLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNV 573

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+YD++EEEKE  +  HSEK+A+AFGLI+  +G  IRI KNLR+C DCH VTK ISK  N
Sbjct: 574 VLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFAN 633

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           REI+VRD NRFHHF++G CSC  YW
Sbjct: 634 REILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 10/265 (3%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           + D   + D    T +I+   + G +D A K+FDE  ER    WNA+    A  G  +E 
Sbjct: 104 LVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKEL 163

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           L L+  M       +  +   VL AC      +  L +G+  H +I R+  +  + + T 
Sbjct: 164 LDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTT 223

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVR 187
           L+D+Y+K G+++ A   F  M  +N  +W+++I   A N    K+LELF LM  +     
Sbjct: 224 LLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSV 283

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           PN VT V++L+ C  +  +E+G+  H   +RR+  ++  L     L+ +YGR G +    
Sbjct: 284 PNSVTMVNMLQACAGLAALEQGKLIHGYILRRQ--LDSILPVLNALITMYGRCGEVLMGQ 341

Query: 247 DVINKMPMKPHAGAWGALLNACRMY 271
            V + M  K    +W +L++   M+
Sbjct: 342 RVFDNMK-KRDVVSWNSLISIYGMH 365



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 11/238 (4%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N ++    + G  ++ALHL       +    + +   ++ +C    +L  G   H  +  
Sbjct: 51  NQLIQSLCKGGNLKQALHLL----CCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           +       L T L++MY + G++++A+  F   +ER +Y W ++   LAM G G++ L+L
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDL 166

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGL----VEEGREHFDSMRREYGIEPWLEHYGCLV 233
           +  M   G   +  T+  VL+ C V  L    + +G+E    + R +G E  +     L+
Sbjct: 167 YIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILR-HGYEANIHVMTTLL 225

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           D+Y + G +  A  V   MP K    +W A++ AC       M  L   +L+  E  N
Sbjct: 226 DVYAKFGSVSYANSVFCAMPTKNFV-SWSAMI-ACFAKNEMPMKALELFQLMMFEACN 281


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/463 (43%), Positives = 298/463 (64%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERD--PIAWN 58
           MY +  C      VF+ + E DV    A+++  ++ G VD A ++F +    D   ++W 
Sbjct: 254 MYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWT 313

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           +M+A  +Q GK  EAL LF  MQI  VK N V++  +L AC ++ AL  G+ AH +  RN
Sbjct: 314 SMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN 373

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            +   V +G+AL+DMY+KCG M  +   F  M  RN+ +W S++ G AM+G   +++ +F
Sbjct: 374 GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIF 433

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            LM++ G +P+ V+F  VL  C   GL EEG  +FDSM R +G+E  +EHY C+V L GR
Sbjct: 434 ELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGR 493

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           +GRL+EA  +I +MP +P +  WGALL++CR++   ++GE+A++++ ELE +N G Y+LL
Sbjct: 494 SGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILL 553

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA    W  V  VR +M+++G+KK PG S IE+  +VH   AGD +HP+  +I   L
Sbjct: 554 SNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKL 613

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            +++  +K +GYV +T+ V+ D+EE++KE  LC HSEK+A+  GL++ K G P++++KNL
Sbjct: 614 AKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNL 673

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH V K IS    REI VRD NRFH FK G CSC  YW
Sbjct: 674 RICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 145/312 (46%), Gaps = 41/312 (13%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMF----DEMPERDPIA 56
           MY +   L   + VFD + +P VV  +A+IS  A+ G V   +++F    D   E + ++
Sbjct: 118 MYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVS 177

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN M++G+ + G   +A+ +F  M +  +K +  S+ SVL A   L     G   H Y+ 
Sbjct: 178 WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVI 237

Query: 117 RNRLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMD 145
           +  L     + +AL+DMY KC                               G ++ A++
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297

Query: 146 FFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
            F   K  + NV +WTS+I   + NG   ++LELF  M+  GV+PN VT   +L  C  +
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNI 357

Query: 204 GLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
             +  G+  H  S+R   GI   +     L+D+Y + GR+  +    + MP + +  +W 
Sbjct: 358 AALLHGKAAHCFSLRN--GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR-NLVSWN 414

Query: 263 ALLNACRMYKNT 274
           +L+    M+  T
Sbjct: 415 SLMAGYAMHGKT 426



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 39/230 (16%)

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--------------------WAHV 113
           + +F  M    +  +   + +V+  C  L AL  G+                      H+
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 114 YIERNRLKMT-----------VTLGTALVDMYSKCGNMNKAMDFFWGMK----ERNVYTW 158
           Y++ + LK             V   +AL+  +++ G + +  + F+  +    E N+ +W
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMR 217
             +I G   +G+   ++ +F  M   G++P+  +  SVL     + +   G + H   ++
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK 238

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +  G + ++     L+D+YG+     E   V N+M  +   GA  AL+  
Sbjct: 239 QGLGPDKFV--VSALIDMYGKCACASEMSGVFNEMD-EVDVGACNALVTG 285


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/437 (45%), Positives = 291/437 (66%), Gaps = 2/437 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH--LMQIHD 84
           T ++   A+ G V  A  +FDEMP ++ ++W+AM+A YA+ GK  EAL LF   ++  HD
Sbjct: 213 TTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHD 272

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
              N V+MVSVL AC    AL+QG+  H YI R  L   + + +AL+ MY++CG +    
Sbjct: 273 SVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQ 332

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M +++V  W S+I    ++G G K++++F  M   G  P+ ++F+SVL  C   G
Sbjct: 333 LIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTG 392

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           LVEEG++ F+SM +E+GI+P +EHY C+VDL GRA RLDEA  +I  + ++P    WG+L
Sbjct: 393 LVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSL 452

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L ACR++ + E+ E AS++L +LE  N G YVLL++IYAE++ WD V  V++++ ++ ++
Sbjct: 453 LGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQ 512

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PG S IEV R+++ F + DE +P+  ++  +L  +S  +K  GY   T  V+YD+++E
Sbjct: 513 KVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQE 572

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  +  HSEK+A+AFGLI+  +G  IRI KNLR+C DCH VTK ISK  +REI+VRD 
Sbjct: 573 EKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDL 632

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFHHFK+G CSC  YW
Sbjct: 633 NRFHHFKDGVCSCGDYW 649



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 132/263 (50%), Gaps = 10/263 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q + DG  + D    T +I+  ++   VD ARK+FD+  +R    WNA+    A  G+  
Sbjct: 93  QLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGN 152

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLG 127
           + L L+  M +  V  +  +   +L AC      +  L +G+  H +I R+     V + 
Sbjct: 153 DVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVM 212

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS--LMKQAG 185
           T L+DMY++ G ++ A   F  M  +NV +W+++I   A NG   ++LELF   ++    
Sbjct: 213 TTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHD 272

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
             PN VT VSVL+ C     +E+G+  H   +RR  G++  L     L+ +Y R G+L+ 
Sbjct: 273 SVPNSVTMVSVLQACAAFAALEQGKLIHAYILRR--GLDSILPVISALITMYARCGKLES 330

Query: 245 ALDVINKMPMKPHAGAWGALLNA 267
              + ++M  K     W +L+++
Sbjct: 331 GQLIFDRM-HKKDVVLWNSLISS 352



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 107/234 (45%), Gaps = 14/234 (5%)

Query: 41  LARKMFDEMPERDPIAWNA-MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
           L+   F   P   P + N  ++    + G  ++AL+L      H+    + +   ++ + 
Sbjct: 24  LSVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLLS----HESNPTQQTCELLILSA 79

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
               +L      H  +          L T L++M+S+   ++ A   F   ++R +Y W 
Sbjct: 80  ARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWN 139

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGRE-HFD 214
           ++   LA+ G G   LEL+  M   GV  +  T+  +L+ C    C+V  +++G+E H  
Sbjct: 140 ALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAH 199

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            +R  YG    +     L+D+Y R G +  A  V ++MP+K +  +W A++ AC
Sbjct: 200 ILRHGYGAH--VHVMTTLMDMYARFGCVSYASAVFDEMPVK-NVVSWSAMI-AC 249


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/440 (46%), Positives = 283/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T+++    KCG ++ AR +FD M E+D + W+AM+ GYA  G  REA+ LF  M+
Sbjct: 239 NVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR 298

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +V+ +  +MV  LS+C  LGAL+ G WA   +          LGT+L+D Y+KCG+M 
Sbjct: 299 KVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSME 358

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A+  +  MKE++   + +VI GLAM G    +  +F  M + G+ PNE TFV +L GC 
Sbjct: 359 EALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCT 418

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV++GR +F+SM  ++ + P +EHYGC+VDL  RAG LDEA ++I  MPMK +   W
Sbjct: 419 HAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVW 478

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           G+LL  CR+++ T++ E   ++L+ELE  N G YVLLSNIY+ S+ WD    +R  +  K
Sbjct: 479 GSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEK 538

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++KLPG S +EVD  VHEF  GD +HP   +I   L  + + LK AGY   T  V++D+
Sbjct: 539 GMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDV 598

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  L  HSEK+A+AF LIS      IR+VKNLRVC DCH+  K ISKV  REI++
Sbjct: 599 EEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVI 658

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F +G CSC+ YW
Sbjct: 659 RDNNRFHCFSDGACSCRDYW 678



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 137/259 (52%), Gaps = 4/259 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    + DV  +T ++   +KCG +  A K+FD+M  ++ ++W  M+ G  + GK REA
Sbjct: 130 VFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREA 189

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  +    ++ +   +V VL AC  LG L+ GRW    +    L   V + T+LVDM
Sbjct: 190 VDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDM 249

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+KCG+M +A   F GM E+++  W+++I G A NG   +++ELF  M++  VRP+    
Sbjct: 250 YTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAM 309

Query: 194 VSVLRGCCVVGLVEEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           V  L  C  +G +E G      M   E+   P L     L+D Y + G ++EAL V   M
Sbjct: 310 VGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEEALGVYKMM 367

Query: 253 PMKPHAGAWGALLNACRMY 271
             K     + A+++   MY
Sbjct: 368 KEKDRV-VFNAVISGLAMY 385



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 3/261 (1%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQ 66
           L +C+ +   +H  + +    + S      +      +F + P   +   +N M+ G   
Sbjct: 22  LAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVS 81

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
             +   A+HL+  M    +  +  +   VL AC  L     G   H  + +      V +
Sbjct: 82  KDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFV 141

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            T +V  YSKCG +  A   F  M  +NV +WT +I G    G   ++++LF  + ++G+
Sbjct: 142 KTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGL 201

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           RP+    V VLR C  +G +E GR   D   RE G+   +     LVD+Y + G ++EA 
Sbjct: 202 RPDGFVIVRVLRACARLGDLESGR-WIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEAR 260

Query: 247 DVINKMPMKPHAGAWGALLNA 267
            V + M  K     W A++  
Sbjct: 261 FVFDGMVEKDIV-CWSAMIQG 280


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/462 (44%), Positives = 299/462 (64%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEP-DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
            Y   G +G  + VFD +    DVV   A+++   + G V  AR++F+EMP RD ++W+ 
Sbjct: 174 FYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWST 233

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ GY + G+   AL +F  M    V++NE ++V+ LSA   +G L+ GR+ H  ++R  
Sbjct: 234 LVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTG 293

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           + ++V +G ALVDM+SKCG +  A + F GM  R+V+ W ++I GLA +G G+ ++ELF 
Sbjct: 294 MPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFW 353

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
                G+ P ++TFV VL  C   GLV EGR +F  M  +Y IEP +EHYGC+VDL GRA
Sbjct: 354 RFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRA 413

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G + EA+++I  M + P    WG +L+AC+ +   ++G     KL+ELE  + G YVLL+
Sbjct: 414 GLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLA 473

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           +IYA++K WD V  VR++M ++G  K  G S++E    +H+F  GD  H    +I  ML 
Sbjct: 474 SIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNMLD 533

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
            I+RRL  AGYV + + V++DI +EEK   +  HSE++AIA+G I  + G PIRIVKNL+
Sbjct: 534 MINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSPIRIVKNLQ 593

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH+ +KM++KVFNREIIVRD +RFHH KEGKCSC  YW
Sbjct: 594 VCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/450 (44%), Positives = 290/450 (64%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q+V +     D      +++  + CG V  AR++FD M +RD +A+NAM+ GYA     +
Sbjct: 453 QQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGK 512

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EAL LF  +Q   +K ++V+ +++L+AC + G+L+  R  H  + +       ++G ALV
Sbjct: 513 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALV 572

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
             Y+KCG+ + A   F  M +RNV +W ++IGG A +G G+ +L+LF  MK  GV+P+ V
Sbjct: 573 STYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIV 632

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TFVS+L  C   GL+EEGR +F SM +++ I P +EHYGC+VDL GRAG+LDEA  +I  
Sbjct: 633 TFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKT 692

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP + +   WGALL ACR++ N  + E A+   ++L+  N   YV LS++YA +  WD  
Sbjct: 693 MPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSA 752

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             +R++M+ +GV K PG S I+V  ++H F A D +HP+  +I   L  ++  +K+ GYV
Sbjct: 753 AKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYV 812

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +T  VM+D++E EKE+ +C HSE++AIA+GLIS   G  I I KNLRVC DCH  TK I
Sbjct: 813 PDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFI 872

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SK+ +REII RD NRFHHFK+G CSC  YW
Sbjct: 873 SKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 1/240 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++ +  HE D    TA++   AKCG     R++F+++  RD IAWN M+ G A+ G   E
Sbjct: 252 RILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEE 311

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A  +++ MQ   V  N+++ V +L+AC +  AL  G+  H  + +      + +  AL+ 
Sbjct: 312 ASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALIS 371

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MYS+CG++  A   F  M  ++V +WT++IGGLA +G G ++L ++  M+QAGV PN VT
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT 431

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           + S+L  C     +E GR        E G+         LV++Y   G + +A  V ++M
Sbjct: 432 YTSILNACSSPAALEWGRR-IHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 137/244 (56%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  Q A+IS  ++CG +  AR +FD+M  +D I+W AM+ G A+ G   EAL ++  MQ
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N V+  S+L+AC+   AL+ GR  H  +    L     +G  LV+MYS CG++ 
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVK 481

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M +R++  + ++IGG A +  G+++L+LF  +++ G++P++VT++++L  C 
Sbjct: 482 DARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 541

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G +E  RE   ++ R+ G          LV  Y + G   +A  V  KM  K +  +W
Sbjct: 542 NSGSLEWARE-IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-KRNVISW 599

Query: 262 GALL 265
            A++
Sbjct: 600 NAII 603



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV     +++  AKCG ++ AR++FD+M ++  ++W   + GYA CG+S  A  +F  M+
Sbjct: 160 DVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKME 219

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N ++ +SVL+A +   AL  G+  H  I     +    +GTALV MY+KCG+  
Sbjct: 220 QEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYK 279

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  +  R++  W ++IGGLA  G  E++ E+++ M++ GV PN++T+V +L  C 
Sbjct: 280 DCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACV 339

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
               +  G+E   S   + G    +     L+ +Y R G + +A  V +KM ++    +W
Sbjct: 340 NSAALHWGKE-IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISW 397

Query: 262 GALL 265
            A++
Sbjct: 398 TAMI 401



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 3/234 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFH 78
           PD     A+I+   +CG ++ AR+++ ++   ER   +WNAM+ GY Q G   +AL L  
Sbjct: 56  PDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLR 115

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ H +  +  +++S LS+C   GAL+ GR  H    +  L   V +   +++MY+KCG
Sbjct: 116 QMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCG 175

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++ +A + F  M++++V +WT  IGG A  G  E + E+F  M+Q GV PN +T++SVL 
Sbjct: 176 SIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLN 235

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
                  ++ G+    S     G E        LV +Y + G   +   V  K+
Sbjct: 236 AFSSPAALKWGKA-VHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 5/186 (2%)

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A+ +   +Q    ++N    + +L  C  +  L  GR  H +I ++R         AL++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 133 MYSKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           MY +CG++ +A   +  +   ER V++W +++ G    G  EK+L+L   M+Q G+ P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 191 VTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            T +S L  C   G +E GRE HF +M  + G+   ++   C++++Y + G ++EA +V 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 250 NKMPMK 255
           +KM  K
Sbjct: 185 DKMEKK 190


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/446 (44%), Positives = 295/446 (66%), Gaps = 4/446 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + ++  Q A+I+A    G +D+A K+FDEM  RD ++W+ +++   +     EAL +F  
Sbjct: 109 DTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQ 168

Query: 80  MQI--HDVK--LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           MQ+   D++  L+   M+SV+SA + LG ++ G W H +I R  + MTV LGTAL++MYS
Sbjct: 169 MQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYS 228

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           +CG +++++  F  M ERNV TWT++I GLA++G   ++L++F  MK++G++P+   F+ 
Sbjct: 229 RCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIG 288

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C   GLVE+G   F+SMR E+GI+P LEHYGC+VDL GRAG + EA D + +MP+K
Sbjct: 289 VLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEEMPLK 348

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P++  W  LL AC  + +  + E A  +++EL+  + G YVLLSN Y    NW     +R
Sbjct: 349 PNSVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLR 408

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
             MK   + K PG S + +D+ VHEF +GD  HP++ EI   L  I   +KL GY  NT+
Sbjct: 409 NSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGYTPNTS 468

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V++DI++EEKE  L  HSEK+A+AF L+  ++   IR++KNLR+C+DCHD  K  S +F
Sbjct: 469 SVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMKHASGIF 528

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           +R+II+RDRNRFHHF +G CSC+ +W
Sbjct: 529 DRDIIIRDRNRFHHFSKGLCSCQDFW 554



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 19/224 (8%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
           DP ++N ++   +  G    A+ LF  M  + V  +  +   +L    H           
Sbjct: 52  DPFSYNTIIKHVSPTG----AISLFSHMHRNSVPFDHFTFPLILKHHHHHLLHSL----- 102

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
             I +      + +  AL++ Y   G+++ A+  F  M+ R++ +W+++I  L  N    
Sbjct: 103 --IFKLGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPA 160

Query: 173 KSLELFSLMKQAGVRP-----NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
           ++L +F  M Q G R      +    +SV+     +G++E G     S     GI   + 
Sbjct: 161 EALSVFQQM-QMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIW-VHSFIVRMGIVMTVP 218

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
               L+++Y R G +D ++ V ++MP + +   W AL+N   ++
Sbjct: 219 LGTALINMYSRCGLIDRSVKVFDEMPER-NVVTWTALINGLAVH 261


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/461 (45%), Positives = 292/461 (63%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +     +FD +    VV    MI      G+VD AR++F  M ERD   W+AM+
Sbjct: 251 YTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMI 310

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y + G   EAL LF  MQ   + LN  S++SVLS C  L +LD G+  H  + R+   
Sbjct: 311 KVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFD 370

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             + + + L+ MY KCGN+ +A   F     ++V  W S+I G + +G GE++L +F  M
Sbjct: 371 QDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDM 430

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +GV P++VTF+ VL  C   G V+EG E F++M+ +Y +EP +EHY CLVDL GRA +
Sbjct: 431 CSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQ 490

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           ++EA+ ++ KMPM+P A  WGALL ACR +   ++ E+A  KL +LE KN G YVLLSN+
Sbjct: 491 VNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNM 550

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET-HPRYNEIEVMLGE 360
           YA    W  V  +R+ +KA+ V KLPGCS IEV+++VH F  GD   HP    I  ML +
Sbjct: 551 YAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEK 610

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L+ AGY  + + V++D++EEEK  +L  HSEK+A+A+GL+ + EG+PIR++KNLRV
Sbjct: 611 LGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRV 670

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+KV  REII+RD NRFHHFK+G CSCK YW
Sbjct: 671 CGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 140/271 (51%), Gaps = 15/271 (5%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +K+FD + E DVV  T MI    + G +D AR +FDEMP+R+ + W AM++GYA+ GK 
Sbjct: 167 ARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKV 226

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
             A  LF +M     + NEVS  ++L   TH G +   R A    +   +K  V +   +
Sbjct: 227 DVARKLFEVMP----ERNEVSWTAMLLGYTHSGRM---REASSLFDAMPVK-PVVVCNEM 278

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  +   G ++KA   F GMKER+  TW+++I      G   ++L LF  M++ G+  N 
Sbjct: 279 IMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNF 338

Query: 191 VTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            + +SVL  C  +  ++ G++ H   +R E+  + ++     L+ +Y + G L  A  V 
Sbjct: 339 PSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVA--SVLITMYVKCGNLVRAKQVF 396

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELA 280
           N+ P+K     W +++     Y    +GE A
Sbjct: 397 NRFPLK-DVVMWNSMITG---YSQHGLGEEA 423



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 22/239 (9%)

Query: 30  ISACAKCGDVDLARKMFDE--MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           I+  A+ G +D ARK+FDE  +P R   +WNAM+A Y +  + REAL LF  M     + 
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMP----QR 84

Query: 88  NEVSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           N VS   ++S     G L + R       +RN     V   T++V  Y + G++ +A   
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDRN-----VVSWTSMVRGYVRNGDVAEAERL 139

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           FW M  +NV +WT ++GGL   G  + + +LF +M +  V    V   +++ G C  G +
Sbjct: 140 FWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDV----VAVTNMIGGYCEEGRL 195

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +E R  FD M +   +      +  +V  Y R G++D A  +   MP +    +W A+L
Sbjct: 196 DEARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKLFEVMPERNEV-SWTAML 248



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 20/253 (7%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +F+ + + + V    +IS   K G +  AR++FD MP+R+ ++W +M+ GY + G   EA
Sbjct: 77  LFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEA 136

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVD 132
             LF  M   +V    VS   +L      G +D  R    +  E++ + +T  +G     
Sbjct: 137 ERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGG---- 188

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
            Y + G +++A   F  M +RNV TWT+++ G A NG  + + +LF +M +     NEV+
Sbjct: 189 -YCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVS 243

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           + ++L G    G + E    FD+M     ++P +     ++  +G  G +D+A  V   M
Sbjct: 244 WTAMLLGYTHSGRMREASSLFDAM----PVKPVVVCNEMIMG-FGLNGEVDKARRVFKGM 298

Query: 253 PMKPHAGAWGALL 265
             + + G W A++
Sbjct: 299 KERDN-GTWSAMI 310


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/443 (43%), Positives = 298/443 (67%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV  Q ++IS   KCG++ +   +F++M ER   +W+A++  +A  G   + L L   
Sbjct: 120 ENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGD 179

Query: 80  MQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M      +  E  +VSVLSACTHLGALD GR  H ++ RN   + V + T+L++MY KCG
Sbjct: 180 MSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCG 239

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + K M  F  M ++N  +++ +I GLAM+G G + L +F+ M + G+ P+++ +V VL 
Sbjct: 240 XLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLN 299

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG + F+ M+ E+GIEP ++HYGC+VDL GRAG++DEAL++I  MPM+P+ 
Sbjct: 300 ACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPND 359

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W +LL+A +++ N + GE+A+++L +L+++    YV+LSN+YA+++ W+ V   R  M
Sbjct: 360 VLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNM 419

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
            +KG+ + PG S++EV R++H F + D  HP+   +  ML ++  +LK  GY  +T  V+
Sbjct: 420 FSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVL 479

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D++EEEK+  L  HS+K+AIA+ LI   +G P+RIV+NLR+C DCH  TK+IS +F+RE
Sbjct: 480 CDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDRE 539

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I VRDR+RFHHFK+G CSC+ YW
Sbjct: 540 ITVRDRHRFHHFKDGACSCRDYW 562



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 6/238 (2%)

Query: 22  DVVCQTAMISACAKC--GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D  C + +++ CA    G +D A  +F +M E     +N M+ G+ +   + EAL  +  
Sbjct: 19  DSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKE 78

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    VK +  +  ++L AC  L A+++G   H +I +  L+  V +  +L+ MY KCG 
Sbjct: 79  MAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGE 138

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLR 198
           +      F  M ER+V +W+++I   A  G     L L   M   G  R  E   VSVL 
Sbjct: 139 IGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLS 198

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +G ++ GR  H   +R   G+   +E    L+++Y + G L + + +  KM  K
Sbjct: 199 ACTHLGALDLGRSVHGFLLRNVSGLNVIVE--TSLIEMYLKCGXLYKGMCLFQKMAKK 254


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/434 (45%), Positives = 291/434 (67%), Gaps = 1/434 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++ S  AKCG V +AR  F+++     I WNAM++GY + G + EA+ LF LM+  +++ 
Sbjct: 314 SLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRP 373

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           + +++ S ++AC  +G+L+  RW   YI  +  +  V + T+L+D Y+KCG+++ A   F
Sbjct: 374 DSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVF 433

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + +++V  W++++ G  ++G G +S+ LF  M+QAGV PN+VTFV +L  C   GLVE
Sbjct: 434 DRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVE 493

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG + F  MR +YGIEP  +HY C+VDL GRAG LD A + +  MP++P    WGALL+A
Sbjct: 494 EGWDLFHRMR-DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSA 552

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           C+++++  +GE A+ +L  L+  N G YV LSN+YA S  WD V  VR +M+ KG+ K  
Sbjct: 553 CKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHL 612

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           G SVIE++ ++  F AGD+THPR  EI   + ++ RRLK AG+V +T  V++D+  EE E
Sbjct: 613 GYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETE 672

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
           +TLC HSE++AIA+GLIS   G  +RI KNLR C +CH   K+ISK+ +REI+VRD  RF
Sbjct: 673 ETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRF 732

Query: 448 HHFKEGKCSCKGYW 461
           HHFK+G CSC  YW
Sbjct: 733 HHFKDGACSCGDYW 746



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 141/255 (55%), Gaps = 6/255 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++F    E DV  Q  +++  AKCG++  A  +F  + +R  ++W ++++GYAQ G+  E
Sbjct: 198 QIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIE 257

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL +F  M+  +V+ + +++VSVL A T +  L+ G+  H  + +  L+    L  +L  
Sbjct: 258 ALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTS 317

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           +Y+KCG++  A  FF  ++  ++  W ++I G   NG  E+++ELF LMK   +RP+ +T
Sbjct: 318 LYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSIT 377

Query: 193 FVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
             S +  C  +G +E  R  + + SM  E+  +  +     L+D Y + G +D A  V +
Sbjct: 378 VTSSIAACAQIGSLELARWMDEYISM-SEFRNDVIVN--TSLIDTYAKCGSVDMARFVFD 434

Query: 251 KMPMKPHAGAWGALL 265
           ++P K     W A++
Sbjct: 435 RIPDK-DVVVWSAMM 448



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 2/238 (0%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +++  +  G+V  ARK+FD+ P+ D   WNA++  Y++ G    A+ ++  MQ+  V  +
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             S   VL AC+ L AL+ GR  H  I R+  +  V +   LV +Y+KCG + +A   F 
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            + +R + +WTS+I G A NG   ++L +FS M++  VRP+ +  VSVLR    V  +E 
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           G+     + +  G+E   +    L  LY + G +  A    N++   P    W A+++
Sbjct: 293 GKSIHGCVIK-MGLECEFDLLISLTSLYAKCGHVMVARLFFNQVE-NPSLIFWNAMIS 348



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 96/165 (58%), Gaps = 7/165 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV+  T++I   AKCG VD+AR +FD +P++D + W+AM+ GY   G+ RE++ LFH M+
Sbjct: 409 DVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMR 468

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCGNM 140
              V  N+V+ V +L+AC + G +++G W   +  R+  ++        +VD+  + G++
Sbjct: 469 QAGVSPNDVTFVGLLTACKNSGLVEEG-WDLFHRMRDYGIEPRHQHYACVVDLLGRAGHL 527

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMN---GAGEKSLE-LFSL 180
           ++A +F   M  E  V  W +++    ++     GE + E LFSL
Sbjct: 528 DRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSL 572



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 30/176 (17%)

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV+  S  G ++ A   F    + +V+ W +++   + +G    ++E+++ M+ A V P+
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172

Query: 190 EVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEH------------------YG 230
             +F  VL+ C  +  +E GR  H    R  +  + ++++                  +G
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232

Query: 231 CLVDL-----------YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            LVD            Y + G+  EAL + ++M        W AL++  R Y + E
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVE 288


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/448 (45%), Positives = 296/448 (66%), Gaps = 3/448 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  + +G+ E DV  ++A+I   AK G+ + A  +FDEM   D I WN+++ G+AQ  +
Sbjct: 134 HCGIIKEGL-ESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 192

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           S  AL LF  M+       + ++ SVL ACT L  L+ G  AHV+I +      + L  A
Sbjct: 193 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNA 250

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LVDMY KCG++  A   F  MKER+V TW+++I GLA NG  +++L+LF LMK +G +PN
Sbjct: 251 LVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPN 310

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +T V VL  C   GL+E+G  +F SM++ YGI P  EHYGC++DL G+AG+LD+A+ ++
Sbjct: 311 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLL 370

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           N+M  +P A  W  LL ACR+ +N  + E A++K++ L+ ++ G Y +LSNIYA S+ WD
Sbjct: 371 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWD 430

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  +R+ M+  G+KK PGCS IEV++++H F  GDE+HP+  E+   L ++  RL   G
Sbjct: 431 SVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIG 490

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV  TN V+ D+E E+ ED+L  HSEK+A+AFGL++L     IRI KNLR+C DCH   K
Sbjct: 491 YVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCK 550

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSC 457
           + SK+ NR I++RD  R+HHF++GKCSC
Sbjct: 551 LASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 6/242 (2%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           C+ ++   H+P +     +I+   K   ++ A ++FD+MP+R+ I+W  M++ Y++C   
Sbjct: 36  CRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 95

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           ++AL L  LM    V+ N  +  SVL AC     +   R  H  I +  L+  V + +AL
Sbjct: 96  QKALELLVLMLRDGVRPNVYTYSSVLRACN---GMSDVRMLHCGIIKEGLESDVYVRSAL 152

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +D+++K G    A+  F  M   +   W S+IGG A N   + +LELF  MK+AG    +
Sbjct: 153 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 212

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T  SVLR C  + L+E G +    + + Y  +  L +   LVD+Y + G L++A  V N
Sbjct: 213 ATLTSVLRACTGLALLELGMQAHVHIVK-YDQDLILNN--ALVDMYCKCGSLEDARRVFN 269

Query: 251 KM 252
           +M
Sbjct: 270 QM 271



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 5/186 (2%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +Q H +  +  +   ++  C    A+ +G     ++  N  +  + L   L++MY K   
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A   F  M +RNV +WT++I   +     +K+LEL  LM + GVRPN  T+ SVLR 
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+ +    H   ++   G+E  +     L+D++ + G  ++AL V ++M +   A 
Sbjct: 124 CN--GMSDVRMLHCGIIKE--GLESDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDAI 178

Query: 260 AWGALL 265
            W +++
Sbjct: 179 VWNSII 184


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/440 (45%), Positives = 278/440 (63%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+    A++   +KCG+V  A+++FD+M ER+   W  M+ G AQ G   +A   F  M 
Sbjct: 658  DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQML 717

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +  +  + VS+LSAC   GAL+  +  H +     L   + +G ALV MY+KCG+++
Sbjct: 718  REGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSID 777

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  M ER+V++WT +IGGLA +G G ++L+ F  MK  G +PN  ++V+VL  C 
Sbjct: 778  DARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACS 837

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GLV+EGR  F SM ++YGIEP +EHY C+VDL GRAG L+EA   I  MP++P    W
Sbjct: 838  HAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPW 897

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            GALL AC  Y N EM E A+++ ++L+ K+   YVLLSNIYA +  W++ + VR +M+ K
Sbjct: 898  GALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRK 957

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            G++K PG S IEVD  +H F  GD +HP   EI   L ++  RLK  GYV +T  V+ + 
Sbjct: 958  GIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNT 1017

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            ++E KE  LC HSEK+AI +GL+  +   PIR+ KNLRVC DCH  TK ISK+  REI+ 
Sbjct: 1018 DQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVA 1077

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD  RFHHFK+G CSC  YW
Sbjct: 1078 RDAKRFHHFKDGVCSCGDYW 1097



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 1/234 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  +TA+++   KCG ++ A+ +FD+M ER+ I+W  M+ G A  G+ +EA HLF  
Sbjct: 251 QSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQ 310

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ      N  + VS+L+A    GAL+  +  H +     L + + +G ALV MY+K G+
Sbjct: 311 MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGS 370

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F GM ER++++WT +IGGLA +G G+++  LF  M++ G  PN  T++S+L  
Sbjct: 371 IDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430

Query: 200 CCVVGLVE-EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             +      E  +       E G    L     L+ +Y + G +D+A  V + M
Sbjct: 431 SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM 484



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 1/233 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++     ++    +CG +  AR++FD++ +++   W  M+ GYA+ G + +A+ ++  
Sbjct: 150 EQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK 209

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+    + NE++ +S+L AC     L  G+  H +I ++  +  V + TALV+MY KCG+
Sbjct: 210 MRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGS 269

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M ERNV +WT +IGGLA  G G+++  LF  M++ G  PN  T+VS+L  
Sbjct: 270 IEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNA 329

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
               G +E  +E   S     G+   L     LV +Y ++G +D+A  V + M
Sbjct: 330 NASAGALEWVKE-VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 381



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 10/249 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A++   AK G +D AR +FD M ERD  +W  M+ G AQ G+ +EA  LF  MQ
Sbjct: 354 DLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQ 413

Query: 82  IHDVKLNEVSMVSVL--SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            +    N  + +S+L  SA     AL+  +  H + E       + +G AL+ MY+KCG+
Sbjct: 414 RNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGS 473

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR- 198
           ++ A   F GM +R+V +W +++GGLA NG G ++  +F  M+Q G+ P+  T++S+L  
Sbjct: 474 IDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNT 533

Query: 199 --GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                 +  V E  +H      E G+          + +Y R G +D+A  + +K+ ++ 
Sbjct: 534 HGSTDALEWVNEVHKH----AVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR- 588

Query: 257 HAGAWGALL 265
           H   W A++
Sbjct: 589 HVTTWNAMI 597



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 96/177 (54%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D+    A+I   AKCG +D AR +FD M +RD I+WNAM+ G AQ G   EA  +F  M
Sbjct: 456 SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQM 515

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q   +  +  + +S+L+      AL+     H +     L     +G+A + MY +CG++
Sbjct: 516 QQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSI 575

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           + A   F  +  R+V TW ++IGG A    G ++L LF  M++ G  P+  TF+++L
Sbjct: 576 DDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINIL 632



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 131/322 (40%), Gaps = 72/322 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER-------- 52
           MYA+ G +   + VFDG+ + DV+   AM+   A+ G    A  +F +M +         
Sbjct: 467 MYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTT 526

Query: 53  -----------DPIAW--------------------NAMLAGYAQCGK------------ 69
                      D + W                    +A +  Y +CG             
Sbjct: 527 YLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLS 586

Query: 70  -------------------SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
                               REAL LF  MQ      +  + +++LSA     AL+  + 
Sbjct: 587 VRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKE 646

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
            H +     L + + +G ALV  YSKCGN+  A   F  M ERNV TWT +IGGLA +G 
Sbjct: 647 VHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGC 705

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
           G  +   F  M + G+ P+  T+VS+L  C   G +E  +E   +     G+   L    
Sbjct: 706 GHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKE-VHNHAVSAGLVSDLRVGN 764

Query: 231 CLVDLYGRAGRLDEALDVINKM 252
            LV +Y + G +D+A  V + M
Sbjct: 765 ALVHMYAKCGSIDDARSVFDDM 786



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 107/202 (52%), Gaps = 2/202 (0%)

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           +++A+ +  +     + ++  S V++L  C     +   +  HV I ++ ++  + +   
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ +Y +CG +  A   F  + ++N+Y WT++IGG A  G  E ++ ++  M+Q   +PN
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+T++S+L+ CC    ++ G++   +   + G +  +     LV++Y + G +++A  + 
Sbjct: 219 EITYLSILKACCCPVNLKWGKK-IHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIF 277

Query: 250 NKMPMKPHAGAWGALLNACRMY 271
           +KM ++ +  +W  ++     Y
Sbjct: 278 DKM-VERNVISWTVMIGGLAHY 298


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/452 (44%), Positives = 296/452 (65%), Gaps = 3/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  + +G+ E DV  ++A+I   AK G+ + A  +FDEM   D I WN+++ G+AQ  +
Sbjct: 182 HCGIIKEGL-ESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           S  AL LF  M+       + ++ SVL ACT L  L+ G  AHV+I +      + L  A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNA 298

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LVDMY KCG++  A+  F  MKER+V TW+++I GLA NG  +++L+LF  MK +G +PN
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +T V VL  C   GL+E+G  +F SM++ YGI+P  EHYGC++DL G+AG+LD+A+ ++
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           N+M  +P A  W  LL ACR+ +N  + E A++K++ L+ ++ G Y LLSNIYA S+ WD
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V  +R  M+ +G+KK PGCS IEV++++H F  GD +HP+  E+   L ++  RL   G
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIG 538

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV  TN V+ D+E E+ ED+L  HSEK+A+AFGL++L     IRI KNLR+C DCH   K
Sbjct: 539 YVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCK 598

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           + SK+  R I++R   R+HHF++GKCSC  YW
Sbjct: 599 LASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 130/242 (53%), Gaps = 6/242 (2%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           C+ ++   H P +     +I+   K   ++ A ++FD+MP+R+ I+W  M++ Y++C   
Sbjct: 84  CRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 143

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           ++AL L  LM   +V+ N  +  SVL +C  +  +   R  H  I +  L+  V + +AL
Sbjct: 144 QKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSAL 200

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +D+++K G    A+  F  M   +   W S+IGG A N   + +LELF  MK+AG    +
Sbjct: 201 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 260

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T  SVLR C  + L+E G +    + + Y  +  L +   LVD+Y + G L++AL V N
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVK-YDQDLILNN--ALVDMYCKCGSLEDALRVFN 317

Query: 251 KM 252
           +M
Sbjct: 318 QM 319



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWA--HVYIERNRLKMTVTLGTALVDMYSKC 137
           +Q H +  +  +   ++  C    A+ +G     H+Y   +R  M   L   L++MY K 
Sbjct: 52  LQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMF--LVNVLINMYVKF 109

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
             +N A   F  M +RNV +WT++I   +     +K+LEL  LM +  VRPN  T+ SVL
Sbjct: 110 NLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVL 169

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           R C   G+ +    H   ++   G+E  +     L+D++ + G  ++AL V ++M +   
Sbjct: 170 RSCN--GMSDVRMLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGD 224

Query: 258 AGAWGALL 265
           A  W +++
Sbjct: 225 AIVWNSII 232


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 292/437 (66%), Gaps = 4/437 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+V+ A  +F  +  +D I+WN ++ GY      +EAL LF  M       
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+SVL AC HLGA+D GRW HVYI++ RLK      +L T+L+DMY+KCG++  A 
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDK-RLKGVTNASSLRTSLIDMYAKCGDIEAAH 354

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  +++ +W ++I G AM+G  + S +LFS M++ G+ P+++TFV +L  C   G
Sbjct: 355 QVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSG 414

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F SM ++Y + P LEHYGC++DL G +G   EA ++IN M M+P    W +L
Sbjct: 415 MLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 474

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+ E  ++ L+++E +N  +Y+LLSNIYA +  W+ V  +R ++  K +K
Sbjct: 475 LKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMK 534

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IEVD  V EF  GD+ HP+  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 535 KVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 594

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK++SK++ REI+ RDR
Sbjct: 595 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDR 654

Query: 445 NRFHHFKEGKCSCKGYW 461
            RFHHF++G CSC  YW
Sbjct: 655 TRFHHFRDGVCSCNDYW 671



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 160/284 (56%), Gaps = 3/284 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +   L    KVFD     DVV  TA+I+  A  GD+  A+K+FDE+P +D ++WNAM
Sbjct: 108 MYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAM 167

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  +EAL LF  M   +V+ +E + V+VLSAC H G+++ GR  H +++ +  
Sbjct: 168 ISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGF 227

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+YSKCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 228 DSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQE 287

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +SVL  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 288 MLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKC 347

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASR 282
           G ++ A  V N M  K    +W A++    M+   +   +L SR
Sbjct: 348 GDIEAAHQVFNSMLHKS-LSSWNAMIFGFAMHGRADASFDLFSR 390



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 33/255 (12%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F+ + E + + WN M+ G+A       +L L+  M    +  N  +   +L +C  
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 102 LGALDQGRWAH--------------------VYIERNRLK-----------MTVTLGTAL 130
                +G+  H                    +Y++  RL+             V   TAL
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  Y+  G++  A   F  +  ++V +W ++I G A  G  +++LELF  M +  VRP+E
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T+V+VL  C   G +E GR+   S   ++G +  L+    L+DLY + G ++ A  +  
Sbjct: 197 STYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 251 KMPMKPHAGAWGALL 265
            +  K    +W  L+
Sbjct: 256 GLSYKD-VISWNTLI 269



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     + +T++I   AKCGD++ A ++F+ M  +   +WNAM+ G+A  G+
Sbjct: 322 YIDKRLKGVTNASSL-RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGR 380

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLG- 127
           +  +  LF  M+   ++ ++++ V +LSAC+H G LD GR  H++    +  KMT  L  
Sbjct: 381 ADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR--HIFRSMTQDYKMTPKLEH 438

Query: 128 -TALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGE 172
              ++D+    G   +A +    M+ E +   W S++    M+G  E
Sbjct: 439 YGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 485


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/465 (44%), Positives = 305/465 (65%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +G  +K+FD +   D+    A+I+   K G++ +A  +F+ M  R+ ++W AM
Sbjct: 151 MYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAM 210

Query: 61  LAGYAQCGKSREALHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           ++GY Q G + +AL LF   L    ++K N V++VSVL AC    AL++GR  H +    
Sbjct: 211 ISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGI 270

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLE 176
            L +  ++ TAL  MY+KC ++ +A   F  + +  +N+  W ++I   A +G G +++ 
Sbjct: 271 GLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVS 330

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F  M +AGV+P+ VTF+ +L GC   GL++ G  HF+ M   + +EP +EHY C+VDL 
Sbjct: 331 IFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLL 390

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAGRL EA ++I++MPM+     WGALL ACR ++N E+ ELA+R+L  LE  N G YV
Sbjct: 391 GRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYV 450

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSN+YAE+  W+ V  +R ++K +G+KK PGCS IE++ + H F   D++HP+  EI  
Sbjct: 451 LLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYK 510

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L  +  ++K+AGY+ +T+ V++DI EEEKE  L  HSEK+AIAFGL++ + GV +R+ K
Sbjct: 511 FLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTK 570

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH  TK ISK++ REIIVRD NRFH FK+G CSC  YW
Sbjct: 571 NLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 69/160 (43%), Gaps = 33/160 (20%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM--- 144
           +  ++  VL +C  L  +  GR  H    R  L+    +G +L+DMY KCG +  A    
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 145 ----------------------------DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
                                       D F  M+ RN+ +WT++I G   NG  E++L 
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 225

Query: 177 LFSLMKQAG--VRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           LF  M Q G  ++PN VT VSVL  C     +E GR   D
Sbjct: 226 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 265


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/464 (44%), Positives = 294/464 (63%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   + VFD + E DV+  T +I A  + GD+  AR +FD +P +D + W AM
Sbjct: 154 MYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAM 213

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYAQ     +AL +F  ++   V+++EV++V V+SAC  LGA     W     E +  
Sbjct: 214 VTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGF 273

Query: 121 KM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            +   V +G+AL+DMYSKCGN+ +A D F GM+ERNV++++S+I G A++G    +++LF
Sbjct: 274 GVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLF 333

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M + GV+PN VTFV VL  C   GLV++G++ F SM + YG+ P  E Y C+ DL  R
Sbjct: 334 YDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSR 393

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG L++AL ++  MPM+     WGALL A  ++ N ++ E+AS++L ELE  N G Y+LL
Sbjct: 394 AGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLL 453

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEV-DREVHEFFAGDETHPRYNEIEVM 357
           SN YA +  WD V  VR++++ K +KK PG S +E  +  +H+F AGD +HP+ NEI+  
Sbjct: 454 SNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKE 513

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++  RLK  GY  N + + Y I + EK   L  HSEK+A+AFGL+S   G  I+I+KN
Sbjct: 514 LNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGSTIKIMKN 573

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR+C DCH V    SKV  R+I+VRD  RFHHF  G CSC  +W
Sbjct: 574 LRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 33/243 (13%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC--- 99
           R +F ++   +P AW A++  YA  G   +AL  +  M+   V     +  ++ SAC   
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 100 --THLGA-------LDQGRWAHVYIERNRLKMTVTLG--------------------TAL 130
             + LGA       L  G  + +Y+    + M V  G                    T L
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  Y++ G+M  A D F G+  +++ TWT+++ G A N     +LE+F  ++  GV  +E
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           VT V V+  C  +G  +      D      +G+   +     L+D+Y + G ++EA DV 
Sbjct: 243 VTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF 302

Query: 250 NKM 252
             M
Sbjct: 303 KGM 305


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/436 (45%), Positives = 294/436 (67%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIHDV 85
             ++ A AKCG++ ++RK+FD M E D  +WN+++A YAQ G S EA  LF  +++  +V
Sbjct: 237 NTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV 296

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + N V++ +VL AC H GAL  G+  H  + +  L+  + +GT++VDMY KCG +  A  
Sbjct: 297 RYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARK 356

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  +K +NV +WT ++ G  M+G G++++++F  M + G++PN +TFVSVL  C   GL
Sbjct: 357 AFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGL 416

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++EG   F+ M+ E+ +EP +EHY C+VDL GRAG L EA  +I +M +KP    WG+LL
Sbjct: 417 LKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLL 476

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++KN E+GE+++RKL +L+  N G YVLLSNIYA++  WD V  +R +MK  G+ K
Sbjct: 477 GACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLK 536

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG S++E    VH F  GD+ HP++ +I   L E++ +L+  GY+ N   V+YD++ EE
Sbjct: 537 TPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEE 596

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           K   L  HSEK+A+AFG+++   G  I+I+KNLR+C DCH   K+ISK+ NREI++RD  
Sbjct: 597 KGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSK 656

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSC  YW
Sbjct: 657 RFHHFKDGLCSCGDYW 672



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 142/272 (52%), Gaps = 14/272 (5%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q+ F   +  D+   +A+I   +KCG ++ ARK+FDE+PER+ ++W +M++GY Q  ++R
Sbjct: 110 QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAR 169

Query: 72  EALHLF-HLMQIHDVKLNEVSMVS----------VLSACTHLGALDQGRWAHVYIERNRL 120
           EA+ LF   + + +   +E+  V           V+SAC  +         H    +   
Sbjct: 170 EAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGF 229

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS- 179
           +  + +G  L+D Y+KCG ++ +   F GM+E +V +W S+I   A NG   ++  LFS 
Sbjct: 230 EGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSD 289

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           ++K+  VR N VT  +VL  C   G ++ G+   D + +   +E  L     +VD+Y + 
Sbjct: 290 MVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVK-MELEDNLVVGTSIVDMYCKC 348

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           GR++ A    +++  K +  +W  ++    M+
Sbjct: 349 GRVEMARKAFDRLKRK-NVKSWTVMVAGYGMH 379



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           + + +VY+W S+I   A +G   ++L  FS M++  + PN  TF   ++ C  +  +  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           ++ H  +    YG + ++     L+D+Y + G L++A  + +++P + +  +W ++++ 
Sbjct: 106 KQIHQQAFVFGYGSDIFVA--SALIDMYSKCGYLNDARKLFDEIPER-NVVSWTSMISG 161


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/445 (44%), Positives = 292/445 (65%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++  +   ++++   AK G ++ AR++F+ +PERD ++  A++AGYAQ G   EAL +F 
Sbjct: 183 YDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQ 242

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +Q   ++ N V+  S+L+A + L  LD G+ AH ++ R  L     L  +L+DMYSKCG
Sbjct: 243 RLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 302

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVL 197
           N++ A   F  M ER   +W +++ G + +G G + LELF LM+ +  V+P+ VT ++VL
Sbjct: 303 NLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 362

Query: 198 RGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            GC    + + G   +D M   EYGI+P  EHYGC+VD+ GRAGR+DEA + I +MP KP
Sbjct: 363 SGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKP 422

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            AG  G+LL ACR++ + ++GE    +L+E+E +N G YV+LSN+YA +  W+ V NVR 
Sbjct: 423 TAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRA 482

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  K V K PG S I+ ++ +H F A D THPR  E+   + EIS ++K AGYV + + 
Sbjct: 483 MMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISC 542

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+YD++EE+KE  L  HSEK+A+ FGLI+  EG+PIR+ KNLR+C DCH+  K+ SKVF 
Sbjct: 543 VLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFE 602

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           RE+ +RD+NRFH   +G CSC  YW
Sbjct: 603 REVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 141/246 (57%), Gaps = 4/246 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P    +T ++    KC  ++ ARK+ DEMPE++ ++W AM++ Y+Q G S EAL +F  M
Sbjct: 84  PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEM 143

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D K NE +  +VL++C     L  G+  H  I +      + +G++L+DMY+K G +
Sbjct: 144 MRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQI 203

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A + F  + ER+V + T++I G A  G  E++LE+F  ++  G+RPN VT+ S+L   
Sbjct: 204 EEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTAL 263

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             + L++ G++ H   +RRE      L++   L+D+Y + G L  A  + + MP +  A 
Sbjct: 264 SGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYAQRLFDNMPERT-AI 320

Query: 260 AWGALL 265
           +W A+L
Sbjct: 321 SWNAML 326



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++L+AC    AL +G+  H ++ + R      L T L+  Y KC  +  A      M E+
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           NV +WT++I   +  G   ++L +F+ M ++  +PNE TF +VL  C     +  G++  
Sbjct: 116 NVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ-I 174

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
             +  ++  +  +     L+D+Y +AG+++EA ++   +P +        +    ++  +
Sbjct: 175 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLD 234

Query: 274 TEMGELASRKLVELETKNHGAYVLL 298
            E  E+  R   E    N+  Y  L
Sbjct: 235 EEALEMFQRLQSEGMRPNYVTYASL 259


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/443 (46%), Positives = 297/443 (67%), Gaps = 2/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++    A+I+  AK G +  A+K+F  +  +D ++WN ++ GYAQ G + EA+ ++ L
Sbjct: 127 EFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLL 185

Query: 80  MQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+ H+ +  N+ + VS+L A +H+GAL QG   H  + +N L   V +GT L+DMY KCG
Sbjct: 186 MEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCG 245

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A+  F+ +  +N   W ++I    ++G GEK+LELF  MK   V+P+ +TFVS+L 
Sbjct: 246 KLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLS 305

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV + +  F+ M  EYGI+P L+HYGC+VDL+GRAG L+ A + I KMP++P A
Sbjct: 306 ACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDA 365

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            AWGALLNACR++ N E+G+ AS +L E++++N G YVLLSNIYA    W+ V +VR + 
Sbjct: 366 SAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLA 425

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G++K PG S I ++ +V  F+ G++THP+  EI   L +++ ++K  GYV +   V+
Sbjct: 426 RDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVL 485

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+EE+EKE  L  HSE++AIA+G+IS     PIRI KNLRVC DCH VTK IS +  RE
Sbjct: 486 QDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITERE 545

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD +RFHHFK G CSC  YW
Sbjct: 546 IIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    +++   ++ G V  ARK+FD+MP RD  +WNAM++GY Q G + EAL +   
Sbjct: 26  EWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADE 85

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++  VK++ +++ SVL  C  +G +  G+  H+Y+ ++ L+  + +  AL++MY+K G+
Sbjct: 86  MRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGS 145

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLR 198
           +  A   F G+  ++V +W ++I G A NG   +++E++ LM++   + PN+ T+VS+L 
Sbjct: 146 LGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILP 204

Query: 199 GCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               VG +++G R H   ++     + ++    CL+D+YG+ G+LD+A+ +  ++P K +
Sbjct: 205 AYSHVGALQQGMRIHGQVIKNCLYSDVFVG--TCLIDMYGKCGKLDDAISLFYQVPRK-N 261

Query: 258 AGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
           +  W A+++   ++ + E   EL      E    +H  +V L
Sbjct: 262 SVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSL 303



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           V+ AC   G L  G+  H  + +   +  V +  +LV MYS+ G +  A   F  M  R+
Sbjct: 3   VVKAC---GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HF 213
             +W ++I G   NG   ++L++   M+  GV+ + +T  SVL  C  VG +  G+  H 
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHL 119

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
             ++  +G+E  L     L+++Y + G L  A  V 
Sbjct: 120 YVIK--HGLEFELFVSNALINMYAKFGSLGHAQKVF 153


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/464 (44%), Positives = 306/464 (65%), Gaps = 15/464 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   ++VFD +   DVV   +MI+   K G+++LA ++FDEMPERD ++ NAM
Sbjct: 153 MYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAM 212

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY      +E L L        ++ +  ++VSVLSA   LG +++G+W H Y+  N++
Sbjct: 213 IDGYG-----KEMLSL-------GLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKI 260

Query: 121 KMTVT-LGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELF 178
           +++   +G+AL+DMYSKCG +  A   F  +  R N+  W S+I GLA++G   ++L++F
Sbjct: 261 ELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIF 320

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M++  + PNE+TF+ +L  C   GLVEEG+ +F+SM  +Y I P ++HYGC++DL+GR
Sbjct: 321 VEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGR 380

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL++AL VI  MP +    AW A+L+A   + + E+G+ A+ + +EL   +  +YVLL
Sbjct: 381 AGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLL 440

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN-EIEVM 357
           SNIYA++  WD V  +R +M+ +GVKK+ GCS + V+ +VHEF  G E    Y+ ++   
Sbjct: 441 SNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAK 500

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + E+  RLKL GY  +   V+ DIE+E KE  L  HSEK+AIAFGLI + +  PI IVKN
Sbjct: 501 IAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKN 560

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   K++SKV+NR+II+RD+NRFHHF+ G CSC  YW
Sbjct: 561 LRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 27/277 (9%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+  V    A  S     G +D A  +F  +   +   + A++ G++      E+L L+ 
Sbjct: 37  HQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYA 96

Query: 79  LMQ--IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            M   ++     E S+ SVL AC  L A D+GR  H  + +  L     +G ++V MY  
Sbjct: 97  RMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYID 156

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ------------- 183
            G +  A   F  M  R+V +W S+I G    G  E + ELF  M +             
Sbjct: 157 FGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGY 216

Query: 184 ------AGVRPNEVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYG-CLVD 234
                  G+RP+    VSVL     +G VEEG+    + SM +   IE      G  L+D
Sbjct: 217 GKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNK---IELSSGFIGSALID 273

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +Y + G ++ A  V   +  + + G W ++++   ++
Sbjct: 274 MYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH 310


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/443 (43%), Positives = 290/443 (65%), Gaps = 2/443 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           HE DV   +A++   A+CG +D+A  +FD++  ++ ++WNA+++G+A+ G    AL +F 
Sbjct: 184 HE-DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFA 242

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ +  +    +  S+ S    +GAL+QG+W H ++ ++R K+T  +G  ++DMY+K G
Sbjct: 243 EMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSG 302

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +M  A   F  +  +++ TW S++   A  G G++++  F  M+++G+  N++TF+ +L 
Sbjct: 303 SMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILT 362

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG+ +FD M +EY +EP +EHY  +VDL GRAG L+ AL  I KMPM+P A
Sbjct: 363 ACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTA 421

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL ACRM+KN ++G+ A+  + +L+  + G  VLL NIYA + +WD    VR++M
Sbjct: 422 AVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMM 481

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           KA GVKK P CS +E+   VH F A D+THPR  EI  M  EIS +++  GYV + + V+
Sbjct: 482 KATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVL 541

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++E+E+E  L  HSEK+A+AF LI +  G  IRI+KN+R+C DCH   K ISKVF RE
Sbjct: 542 LHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFERE 601

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD NRFHHF  G CSC  YW
Sbjct: 602 IVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 4/253 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D     ++I    KCG V  A K+FD+M ++D ++W +++AGYAQ     EA+ L   
Sbjct: 83  EGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPG 142

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M     K N  +  S+L A         G   H    +      V +G+AL+DMY++CG 
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGK 202

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M+ A   F  +  +N  +W ++I G A  G GE +L +F+ M++ G      T+ S+  G
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSG 262

Query: 200 CCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +G +E+G+  H   ++    +  ++ +   ++D+Y ++G + +A  V  ++  K   
Sbjct: 263 LAGIGALEQGKWVHAHMVKSRQKLTAFVGN--TMLDMYAKSGSMIDARKVFERVLNKDLV 320

Query: 259 GAWGALLNACRMY 271
             W ++L A   Y
Sbjct: 321 -TWNSMLTAFAQY 332



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           + ++AC     LD  R  H ++  +R +    L  +L+ +Y KCG++ +A   F  M+++
Sbjct: 56  AFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKK 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           ++ +WTS+I G A N    +++ L   M +   +PN  TF S+L+          G + H
Sbjct: 116 DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIH 175

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             +++ ++  + ++     L+D+Y R G++D A  V +K+  K +  +W AL++
Sbjct: 176 ALAVKCDWHEDVYVG--SALLDMYARCGKMDMATAVFDKLDSK-NGVSWNALIS 226


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/443 (45%), Positives = 294/443 (66%), Gaps = 8/443 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDV 85
           +A++     C  V+  R++FD +  R    WNAM++GYA+ G   +AL LF  ++++  +
Sbjct: 254 SALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGL 313

Query: 86  KLNEVSMVSVLSACTH-LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
             N  +M SV+ AC H L A+ +G+  H Y  RN L   +T+G+ALVDMY+KCG +N + 
Sbjct: 314 LPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSR 373

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAG----VRPNEVTFVSVLRG 199
             F  M  +NV TW  +I    M+G GE++LELF +++ +AG     +PNEVTF++V   
Sbjct: 374 RVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 433

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK-PHA 258
           C   GL+ EG   F  M+ ++G+EP  +HY C+VDL GRAG+L+EA +++N MP +    
Sbjct: 434 CSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKV 493

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
           GAW +LL ACR+++N E+GE+A++ L+ LE      YVLLSNIY+ +  W++ + VR+ M
Sbjct: 494 GAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 553

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           +  GVKK PGCS IE   EVH+F AGD +HP+  ++   L  +S +++  GYV +T+ V+
Sbjct: 554 RQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVL 613

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           ++++E+EKE+ LC HSEK+AIAFG+++   G  IR+ KNLRVC DCH  TK ISK+  RE
Sbjct: 614 HNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMERE 673

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD  RFHHFKEG CSC  YW
Sbjct: 674 IIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 147/279 (52%), Gaps = 18/279 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +G   K F            A+++  AK G VD ++ +F+   +RD ++WN M
Sbjct: 137 MYGKCGGIG--DKTF---------TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTM 185

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           ++ ++Q  +  EAL  F LM +  V+L+ V++ SVL AC+HL  LD G+  H Y+ RN  
Sbjct: 186 ISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNND 245

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF- 178
           L     +G+ALVDMY  C  +      F  +  R +  W ++I G A NG  EK+L LF 
Sbjct: 246 LIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFI 305

Query: 179 SLMKQAGVRPNEVTFVSVLRGCC-VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLY 236
            ++K AG+ PN  T  SV+  C   +  + +G+E H  ++R     +  +     LVD+Y
Sbjct: 306 EMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASD--ITVGSALVDMY 363

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            + G L+ +  V N+MP K +   W  L+ AC M+   E
Sbjct: 364 AKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGE 401



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 23/209 (11%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P R   +W   L    +    REA+  +  M +   + +  +  +VL A + L  L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 110 WAHVY-IERNRLKMTVTLGTALVDMYSKCGNM------NKAM--------------DFFW 148
             H   ++      +VT+   LV+MY KCG +      N A+                F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
              +R++ +W ++I   + +    ++L  F LM   GV  + VT  SVL  C  +  ++ 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLY 236
           G+E H   +R    IE        LVD+Y
Sbjct: 233 GKEIHAYVLRNNDLIENSFVG-SALVDMY 260


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 293/446 (65%), Gaps = 3/446 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  E + V  T +I+  A+CGDV  AR MFD M     +++NAM+    +     EAL L
Sbjct: 168 GAAEHEYVAPT-LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVL 226

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ   +K   V+++SVLSAC  LGAL+ GRW H YI + RL   V + TAL+DMY+K
Sbjct: 227 FREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAK 286

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A+  F  M+ R+   W+ ++   A +G G +++ +F  MK+ G++P++VTF+ V
Sbjct: 287 CGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGV 346

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G+V EG ++FDSM REYGI   ++HYGC+ DL  R+G+L+ A   I+++P+KP
Sbjct: 347 LYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKP 405

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  W  LL+AC  + + +MG+    +++EL+  + G YV+ SN+ A +  W+ +  VR+
Sbjct: 406 TAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRK 465

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  KGV K+PGCS IE+D  VHEFFAGD +HP   E   M+ E+  +LKL GYV NT+ 
Sbjct: 466 LMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSH 525

Query: 377 VMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
           V + ++ EEEK  +L  HSEK+AI+FGL++   G  +RIVKNLRVC DCH + K++S VF
Sbjct: 526 VFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVF 585

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NR II+RD NRFHHF++G CSC  YW
Sbjct: 586 NRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 27  TAMISACAKCG-----DVDLARKMFDEMPERDPIAW-NAMLAGYAQCGKSREALH----L 76
           T +++ C + G      +  AR++FD +P    + W N +L GYA+ G           +
Sbjct: 66  TRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARV 125

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M    V  +  + VS+L AC    A ++GR AH    +        +   L++MY++
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A   F  M    V ++ ++I     +    ++L LF  M+  G++P  VT +SV
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C ++G +E GR   D +R+   ++  ++    L+D+Y + G L++A+ V   M  + 
Sbjct: 246 LSACALLGALELGRWIHDYIRK-MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRD 304

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
              AW  ++ A   Y N   G  A     E++ +
Sbjct: 305 KQ-AWSVMMVA---YANHGYGREAISMFEEMKKQ 334


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/440 (43%), Positives = 282/440 (64%), Gaps = 6/440 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLM--QIH 83
           A+I   +KC     AR +FD +P  ER+ + W  M+ GYAQ G S +AL +F  M  + +
Sbjct: 447 ALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPY 506

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL--KMTVTLGTALVDMYSKCGNMN 141
            V  N  ++  +L AC HL AL  G+  H Y+ R+         +   L+DMYSKCG+++
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  M +RN  +WTS++ G  M+G G+++L++F  M++AG  P++++F+ +L  C 
Sbjct: 567 TARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACS 626

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G+V++G  +FD MRR+Y +    EHY C++DL  R GRLD+A   I +MPM+P A  W
Sbjct: 627 HSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIW 686

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ACR++ N E+ E A  KLV ++ +N G+Y L+SNIYA ++ W  V  +RQ+MK  
Sbjct: 687 VALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKS 746

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK PGCS ++  +    FF GD +HP   EI  +L  +  R+K+ GYV  TN  ++D+
Sbjct: 747 GIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDV 806

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           ++EEK + L +HSEK+A+A+GL++   G PIRI KNLRVC DCH     ISK+ + EIIV
Sbjct: 807 DDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIV 866

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD +RFHHFK G CSC GYW
Sbjct: 867 RDSSRFHHFKNGSCSCGGYW 886



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 151/291 (51%), Gaps = 22/291 (7%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
           YA+ G +    KVF+ +   DVV   AM++   + G+   A ++F+ M +     D I W
Sbjct: 304 YAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITW 363

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           +A++AGYAQ G S+EAL  F  M +   + N V+++S+LSAC  LGAL QG   H Y  +
Sbjct: 364 SAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLK 423

Query: 118 NRL------------KMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIG 163
             L               + +  AL+DMYSKC +   A   F  +  +ERNV TWT +IG
Sbjct: 424 KCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIG 483

Query: 164 GLAMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           G A  G    +L++FS M  K   V PN  T   +L  C  +  +  G++    + R + 
Sbjct: 484 GYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHE 543

Query: 222 IEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            EP +     CL+D+Y + G +D A +V + MP K +  +W ++++   M+
Sbjct: 544 YEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 55/291 (18%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHL 76
           E +V    A+++  ++CG ++ A  +FDE+  +   D I+WN+++A + +    R AL L
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALEL 240

Query: 77  FHLMQ--IHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           F  M   +H+   NE    +S+V++L AC  L AL Q +  H Y  RN       +  AL
Sbjct: 241 FSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNAL 300

Query: 131 VDMYSKCGNMNKAM-------------------------------DFFWGMKERN----V 155
           +D Y+KCG+MN A+                               + F  M++ N    V
Sbjct: 301 IDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDV 360

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFD 214
            TW++VI G A  G  +++L+ F  M   G  PN VT +S+L  C  +G + +G E H  
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420

Query: 215 SMRR----------EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           S+++            G    L  Y  L+D+Y +      A  + + +P +
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRR 471



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 13/250 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++++   CG    A  + + +     + WN ++  + + G    A+ +   M     K
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  ++   L AC  L +   GR  H  I  N  +  V +  ALV MYS+CG++  A   
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 147 FWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLM------KQAGVRPNEVTFVSVL 197
           F  +  +   +V +W S++           +LELFS M      K    R + ++ V++L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +  + + +E H  ++R     + ++     L+D Y + G +++A+ V N M  K 
Sbjct: 267 PACASLKALPQIKEIHSYAIRNGTFADAFV--CNALIDTYAKCGSMNDAVKVFNVMEFK- 323

Query: 257 HAGAWGALLN 266
              +W A++ 
Sbjct: 324 DVVSWNAMVT 333



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +   + VF                               D MP+R+ ++W +M
Sbjct: 558 MYSKCGDVDTARNVF-------------------------------DSMPKRNEVSWTSM 586

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-R 119
           ++GY   G+ +EAL +F  MQ      +++S + +L AC+H G +DQG      + R+  
Sbjct: 587 MSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYD 646

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           +  +      ++D+ ++CG ++KA      M  E +   W +++  
Sbjct: 647 VVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/438 (45%), Positives = 289/438 (65%), Gaps = 4/438 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I   AK G V  A ++F  MP+R+ ++W+AM+  YA+  +  +A+ +F  M   D  
Sbjct: 394 TTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDAD 453

Query: 87  L--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           L  N +++VSVL AC  + AL QG+  H YI R    + V++  AL+ MY KCG +    
Sbjct: 454 LVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGR 513

Query: 145 DFF-WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
             F W  + RNV +W S+I G  M+G G +SL++F  M + G+ PN +TFVSVL  C  V
Sbjct: 514 YIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHV 573

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GLVE+G++ F+SM  EY + P  EHY C+VDL GRAGRLDEA+++I  M ++P    WG+
Sbjct: 574 GLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGS 632

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR++ + E  E+A   L +LE +N G YVLL++IYA +K  ++V  ++++++   +
Sbjct: 633 LLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHAL 692

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           +K+PGCS IEV ++++ F + D  +P+  E++ ++GE   ++K  GYV +T  V+YDIEE
Sbjct: 693 EKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEE 752

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           EEKE  L  HSEK+A+AFGLI    G  IRI KNLR+C DCH VTK ISK  +REI+VRD
Sbjct: 753 EEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRD 812

Query: 444 RNRFHHFKEGKCSCKGYW 461
            NRFHHF+ G CSC+ YW
Sbjct: 813 VNRFHHFRNGVCSCRDYW 830


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/440 (44%), Positives = 288/440 (65%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+    A++   AKCGD++ AR +FD+M  RD ++W +M++GYA  G + E L  F LM+
Sbjct: 852  DLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMR 911

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               V  N VS++SVL AC +LGAL +G W H Y+ +   +  + + TA++DMYSKCG+++
Sbjct: 912  SSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLD 971

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F     +++  W+++I    ++G G K+++LF  M +AGVRP+ VTF  VL  C 
Sbjct: 972  LARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GL+EEG+ +F  M  E+ I   L +Y C+VDL GRAG+L EA+D+I  MP++P A  W
Sbjct: 1032 HSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIW 1091

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            G+LL ACR++ N ++ E  +  L  L+  + G +VLLSNIYA    W+ V  VR++M  +
Sbjct: 1092 GSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARR 1151

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            G  K+ G S++E D +VH+F  GD +HP++ ++   L E++  +K  GYV  T+ V++DI
Sbjct: 1152 GANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDI 1211

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EEE KE  L  HSE++AIAFGLI+   G  +RI KNLR+C DCH+  K+ISK+ NR I+V
Sbjct: 1212 EEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILV 1271

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD +RFH F++G CSC  YW
Sbjct: 1272 RDMHRFHRFEDGVCSCGDYW 1291



 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 221/362 (61%), Gaps = 1/362 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D    TA+I    KC   D A  +F  +P++D ++W A+L+GYAQ G + +++ +F  
Sbjct: 339 ELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRN 398

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    ++ + V++V +L+A + LG   Q    H Y+ R+     V +G +L+++YSKCG+
Sbjct: 399 MLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGS 458

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLR 198
           +  A+  F GM  R+V  W+S+I    ++G G ++LE+F  M K + VRPN VTF+S+L 
Sbjct: 459 LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILS 518

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVEEG + FD M  +Y + P  EH+G +VDL GR G+L +A+D+IN+MP+    
Sbjct: 519 ACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGP 578

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL ACR++ N EMGE A++ L  L+  + G Y+LLSNIYA    WD V  +R  +
Sbjct: 579 HVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRI 638

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K +G+KK+ G S++EV   VH F A D  HP   +I  +L ++  ++    Y+ + + ++
Sbjct: 639 KERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLL 698

Query: 379 YD 380
           +D
Sbjct: 699 HD 700



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 3/246 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   +A++   +KCG +  A K+F+E    D + W +M+ GY Q     EAL LF  M 
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 82  IHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           + D V L+ V++VSV+SAC  L  +  G   H  + R      + L  +L+++Y+K G  
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A + F  M E++V +W+++I   A N A  ++L LF  M +    PN VT VS L+ C
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            V   +EEG++    +    G E        L+D+Y +    DEA+D+  ++P K    +
Sbjct: 318 AVSRNLEEGKK-IHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVS 375

Query: 261 WGALLN 266
           W ALL+
Sbjct: 376 WVALLS 381



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           ++ FDG    D+    ++++  AK G   +A  +F +MPE+D I+W+ M+A YA    + 
Sbjct: 234 RREFDG----DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAAN 289

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EAL+LFH M     + N V++VS L AC     L++G+  H        ++  ++ TAL+
Sbjct: 290 EALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALI 349

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DMY KC   ++A+D F  + +++V +W +++ G A NG   KS+ +F  M   G++P+ V
Sbjct: 350 DMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAV 409

Query: 192 TFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
             V +L     +G+ ++    H   +R  +    ++     L++LY + G L +A+ +  
Sbjct: 410 AVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVG--ASLIELYSKCGSLGDAVKLFK 467

Query: 251 KMPMKPHAGAWGALLNA 267
            M ++     W +++ A
Sbjct: 468 GMIVRD-VVIWSSMIAA 483



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +D A  +F+++P      WN M+ G+A  G+   +L L+  M    +K ++ +    L +
Sbjct: 768 IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKS 827

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C  L  L +G+  H ++        + +  ALVDMY+KCG++  A   F  M  R++ +W
Sbjct: 828 CAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSW 887

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           TS+I G A NG   ++L  F LM+ +GV PN V+ +SVL  C  +G + +G E F S   
Sbjct: 888 TSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVI 946

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           + G E  +     ++D+Y + G LD A
Sbjct: 947 QTGFEFDILVATAIMDMYSKCGSLDLA 973



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    T + S  AKC  +  ARK+FDE P  +   WN+ L  Y +  +  E L LFHLM 
Sbjct: 35  DTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMI 94

Query: 82  IHDVKLNEVSMVSV-LSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGN 139
               +  +   + + L AC  L  L+ G+  H + ++N  +   + +G+ALV++YSKCG 
Sbjct: 95  CTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQ 154

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLR 198
           M +A+  F   +  +   WTS++ G   N   E++L LFS M     V  + VT VSV+ 
Sbjct: 155 MGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVS 214

Query: 199 GCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +  V+ G   H   +RRE+  +  L     L++LY + G    A ++ +KMP K  
Sbjct: 215 ACAQLLNVKAGSCVHGLVIRREFDGD--LPLVNSLLNLYAKTGCEKIAANLFSKMPEKD- 271

Query: 258 AGAWGALLNACRMYKNTE 275
             +W  ++ AC  Y N E
Sbjct: 272 VISWSTMI-AC--YANNE 286



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 2/147 (1%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            E D++  TA++   +KCG +DLAR +FDE   +D + W+AM+A Y   G  R+A+ LF  
Sbjct: 951  EFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQ 1010

Query: 80   MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    V+ + V+   VLSAC+H G L++G+ +  +  E   +   ++    +VD+  + G
Sbjct: 1011 MVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAG 1070

Query: 139  NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
             +++A+D    M  E +   W S++G 
Sbjct: 1071 QLSEAVDLIENMPVEPDASIWGSLLGA 1097



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 42/171 (24%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G LG   K+F G+   DVV  ++MI+A                            
Sbjct: 452 LYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAA---------------------------- 483

Query: 61  LAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQG-----RWAHVY 114
              Y   G+  EAL +F  +++   V+ N V+ +S+LSAC+H G +++G     R  H Y
Sbjct: 484 ---YGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDY 540

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
               +L+        +VD+  + G + KAMD    M      + W +++G 
Sbjct: 541 ----QLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGA 587



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
            H  I    L+    + T    MY     ++ A   F  +     + W  +I G A +G 
Sbjct: 739 THAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGR 798

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPWLE 227
              SLEL+S M + G++P++  F   L+ C  +  ++ G+   +H        G    L 
Sbjct: 799 FLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCC----GCSNDLF 854

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMK 255
               LVD+Y + G ++ A  V +KM ++
Sbjct: 855 VDAALVDMYAKCGDIEAARLVFDKMAVR 882


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/437 (46%), Positives = 299/437 (68%), Gaps = 6/437 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHD 84
           +TA++   AK GD+D ARK+F+ MP R+ + WN+M+AGYAQ G+S  A+ LF  ++    
Sbjct: 298 RTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKK 357

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           +  +EV+MVSV+SAC HLGAL+ G W   ++  N++K++++   A++ MYS+CG+M  A 
Sbjct: 358 LTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAK 417

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  R+V ++ ++I G A +G G +++ L S MK+ G+ P+ VTF+ VL  C   G
Sbjct: 418 RVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAG 477

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L+EEGR+ F+S++     +P ++HY C+VDL GR G L++A   + +MPM+PHAG +G+L
Sbjct: 478 LLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSL 532

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           LNA R++K  E+GELA+ KL ELE  N G ++LLSNIYA +  W  V  +R+ MK  GVK
Sbjct: 533 LNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVK 592

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K  G S +E   ++H+F   D +H R ++I  +L E+ ++++ AGY+A+ + V+ D+EEE
Sbjct: 593 KTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEE 652

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE+ +  HSEK+AI + L+  + G  IR+VKNLRVCWDCH   KMISK+  R IIVRD 
Sbjct: 653 EKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDN 712

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFH F +G CSCK YW
Sbjct: 713 NRFHCFNDGLCSCKDYW 729



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 141/248 (56%), Gaps = 2/248 (0%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G  Q +FD + E +V+  TAM++  AK  D++ AR+ FD MPER  ++WNAML+GYAQ G
Sbjct: 180 GQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNG 239

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            + EAL LF  M    ++ +E + V+V+SAC+  G           + + R+++   + T
Sbjct: 240 LAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRT 299

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVR 187
           AL+DMY+K G+++ A   F  M  RNV TW S+I G A NG    ++ELF  M  A  + 
Sbjct: 300 ALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT 359

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+EVT VSV+  C  +G +E G      +  E  I+  +  +  ++ +Y R G +++A  
Sbjct: 360 PDEVTMVSVISACGHLGALELGNWVVRFL-TENQIKLSISGHNAMIFMYSRCGSMEDAKR 418

Query: 248 VINKMPMK 255
           V  +M  +
Sbjct: 419 VFQEMATR 426


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/445 (44%), Positives = 289/445 (64%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++  +   ++++   AK G +  AR++F+ +PERD ++  A++AGYAQ G   EAL +FH
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +    +  N V+  S+L+A + L  LD G+ AH ++ R  L     L  +L+DMYSKCG
Sbjct: 244 RLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 303

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVL 197
           N++ A   F  M ER   +W +++ G + +G G + LELF LM+ +  V+P+ VT ++VL
Sbjct: 304 NLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 363

Query: 198 RGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            GC    + + G   FD M   EYG +P  EHYGC+VD+ GRAGR+DEA + I +MP KP
Sbjct: 364 SGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKP 423

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            AG  G+LL ACR++ + ++GE   R+L+E+E +N G YV+LSN+YA +  W  V NVR 
Sbjct: 424 TAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRA 483

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  K V K PG S I+ ++ +H F A D THPR  E+   + EIS ++K AGYV + + 
Sbjct: 484 MMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSC 543

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+YD++EE+KE  L  HSEK+A+ FGLI+  EG+PIR+ KNLR+C DCH+  K+ SKVF 
Sbjct: 544 VLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFE 603

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           RE+ +RD+NRFH   +G CSC  YW
Sbjct: 604 REVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 139/246 (56%), Gaps = 4/246 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P    +T ++    KC  ++ ARK+ DEMPE++ ++W AM++ Y+Q G S EAL +F  M
Sbjct: 85  PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEM 144

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D K NE +  +VL++C     L  G+  H  I +      + +G++L+DMY+K G +
Sbjct: 145 MRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQI 204

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A + F  + ER+V + T++I G A  G  E++LE+F  +   G+ PN VT+ S+L   
Sbjct: 205 KEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTAL 264

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             + L++ G++ H   +RRE      L++   L+D+Y + G L  A  + + MP +  A 
Sbjct: 265 SGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYARRLFDNMPERT-AI 321

Query: 260 AWGALL 265
           +W A+L
Sbjct: 322 SWNAML 327



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 1/205 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++L+AC    AL  G+  H ++ + R      L T L+  Y KC  +  A      M E+
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           NV +WT++I   +  G   ++L +F+ M ++  +PNE TF +VL  C     +  G++  
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-I 175

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
             +  ++  +  +     L+D+Y +AG++ EA ++   +P +        +    ++  +
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLD 235

Query: 274 TEMGELASRKLVELETKNHGAYVLL 298
            E  E+  R   E  + N+  Y  L
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASL 260


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 293/446 (65%), Gaps = 3/446 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  E + V  T +I+  A+CGDV  AR MFD M     +++NAM+    +     EAL L
Sbjct: 168 GAAEHEYVAPT-LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVL 226

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ   +K   V+++SVLSAC  LGAL+ GRW H YI + RL   V + TAL+DMY+K
Sbjct: 227 FREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAK 286

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A+  F  M+ R+   W+ ++   A +G G +++ +F  MK+ G++P++VTF+ V
Sbjct: 287 CGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGV 346

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G+V EG ++FDSM REYGI   ++HYGC+ DL  R+G+L+ A   I+++P+KP
Sbjct: 347 LYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKP 405

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  W  LL+AC  + + +MG+    +++EL+  + G YV+ SN+ A +  W+ +  VR+
Sbjct: 406 TAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRK 465

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  KGV K+PGCS IE+D  VHEFFAGD +HP   E   M+ E+  +LKL GYV NT+ 
Sbjct: 466 LMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSH 525

Query: 377 VMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
           V + ++ EEEK  +L  HSEK+AI+FGL++   G  +RIVKNLRVC DCH + K++S VF
Sbjct: 526 VFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVF 585

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NR II+RD NRFHHF++G CSC  YW
Sbjct: 586 NRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 27  TAMISACAKCG-----DVDLARKMFDEMPERDPIAW-NAMLAGYAQCGKSREALH----L 76
           T +++ C + G      +  AR++FD +P    + W N +L GYA+ G           +
Sbjct: 66  TRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARV 125

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M    V  +  + VS+L AC    A ++GR AH    +        +   L++MY++
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A   F  M    V ++ ++I     +    ++L LF  M+  G++P  VT +SV
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C ++G +E GR   D +R+   ++  ++    L+D+Y + G L++A+ V   M  + 
Sbjct: 246 LSACALLGALELGRWIHDYIRK-MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRD 304

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
              AW  ++ A   Y N   G  A     E++ +
Sbjct: 305 KQ-AWSVMMVA---YANHGYGREAISMFEEMKKQ 334


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/440 (43%), Positives = 291/440 (66%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   +A++   A+CG +D+A  +FD++  ++ ++WNA++AG+A+ G     L +F  MQ
Sbjct: 75  DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 134

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  +    +  SV SA   +GAL+QG+W H ++ ++  +++  +G  ++DMY+K G+M 
Sbjct: 135 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 194

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + ++++ TW S++   A  G G +++  F  M++ GV  N++TF+S+L  C 
Sbjct: 195 DARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 254

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EG+++FD M +E+ +EP ++HY  +VDL GRAG L++AL  I KMPMKP A  W
Sbjct: 255 HGGLVKEGKQYFD-MMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 313

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL +CRM+KN ++G+ A+  + EL+  + G  VLL NIYA +  WD    VR++MKA 
Sbjct: 314 GALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKAT 373

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK P CS +E++  VH F A D+THPR  EI     EIS +++ AGYV NT+ V+  +
Sbjct: 374 GVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHV 433

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +E+E++  L  HSEK+A+AF LI++  G  IRI+KN+R+C DCH   + ISKVF REI+V
Sbjct: 434 DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVV 493

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF  G CSC  YW
Sbjct: 494 RDTNRFHHFSSGSCSCGDYW 513



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           M  RD  +W +++AGYAQ     EAL L   M     K N  +  S+L A     +   G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
              H    +      V +G+AL+DMY++CG M+ A+  F  ++ +N  +W ++I G A  
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLE 227
           G GE +L +F+ M++ G      T+ SV      +G +E+G+  H   ++    +  ++ 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +   ++D+Y ++G + +A  V + +  K     W ++L A   Y
Sbjct: 181 N--TILDMYAKSGSMIDARKVFDHVDKKDLV-TWNSMLTAFAQY 221



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + D+V   +M++A                            
Sbjct: 186 MYAKSGSMIDARKVFDHVDKKDLVTWNSMLTA---------------------------- 217

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
              +AQ G  REA+  F  M+   V LN+++ +S+L+AC+H G + +G+     ++ + L
Sbjct: 218 ---FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNL 274

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMN 168
           +  +     +VD+  + G +N A+ F + M  +     W +++G   M+
Sbjct: 275 EPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 323


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/462 (45%), Positives = 303/462 (65%), Gaps = 2/462 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +G  +KVFD +   DV+C T+++ A ++  D+  A ++F + P +D +AW AM+
Sbjct: 191 YIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMV 250

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GYAQ     +AL +F  M    + ++EVS+   +SAC  LGA+ +  W     E N   
Sbjct: 251 TGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFG 310

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SL 180
           M V +G+ LVDMY+KCG +++A   F GM+E+NVYT++S++ GLA +G   +++ LF  +
Sbjct: 311 MNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDM 370

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           +++A V PN VTF+ VL  C   G+V +GR +F  M+ +YGI P  +HY C+VDL GRAG
Sbjct: 371 VRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAG 430

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            +DEALD++  M ++PH G WGALL ACR++  TE+ ++A+  L +LE +  G YVLLSN
Sbjct: 431 LVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIGNYVLLSN 490

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE-VDREVHEFFAGDETHPRYNEIEVMLG 359
             A +  WD V  VR++M+++ +KK+P  S  E  D  VH+FFAGD +HPR  EI+  L 
Sbjct: 491 TLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHPRTREIKKALL 550

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  +LK AGYV   + ++YD+  EEKE  L  HSEK+A+ FGL++L     IRIVKNLR
Sbjct: 551 ELVAKLKHAGYVPILSSIVYDVSNEEKERLLMGHSEKLALLFGLLTLGSRCTIRIVKNLR 610

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH   +++S+    EIIVRD  RFHHFK+G+CSC G+W
Sbjct: 611 ICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 293/446 (65%), Gaps = 3/446 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  E + V  T +I+  A+CGDV  AR MFD M     +++NAM+    +     EAL L
Sbjct: 168 GAAEHEYVAPT-LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVL 226

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ   +K   V+++SVLSAC  LGAL+ GRW H YI + RL   V + TAL+DMY+K
Sbjct: 227 FREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAK 286

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A+  F  M+ R+   W+ ++   A +G G +++ +F  MK+ G++P++VTF+ V
Sbjct: 287 CGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGV 346

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G+V EG ++FDSM REYGI   ++HYGC+ DL  R+G+L+ A   I+++P+KP
Sbjct: 347 LYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKP 405

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  W  LL+AC  + + +MG+    +++EL+  + G YV+ SN+ A +  W+ +  VR+
Sbjct: 406 TAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRK 465

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  KGV K+PGCS IE+D  VHEFFAGD +HP   E   M+ E+  +LKL GYV NT+ 
Sbjct: 466 LMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSH 525

Query: 377 VMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
           V + ++ EEEK  +L  HSEK+AI+FGL++   G  +RIVKNLRVC DCH + K++S VF
Sbjct: 526 VFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVF 585

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NR II+RD NRFHHF++G CSC  YW
Sbjct: 586 NRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 15/275 (5%)

Query: 27  TAMISACAKCG-----DVDLARKMFDEMPERDPIAW-NAMLAGYAQCGK----SREALHL 76
           T +++ C + G      +  AR++FD +P    + W N +L GYA+ G     + EA  +
Sbjct: 66  TRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARV 125

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M    V  +  + VS+L AC    A ++GR AH    +        +   L++MY++
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A   F  M    V ++ ++I     +    ++L LF  M+  G++P  VT +SV
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C ++G +E GR   D +R+   ++  ++    L+D+Y + G L++A+ V   M  + 
Sbjct: 246 LSACALLGALELGRWIHDYIRK-MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRD 304

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
              AW  ++ A   Y N   G  A     E++ + 
Sbjct: 305 KQ-AWSVMMVA---YANHGYGREAISMFEEMKKQG 335


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/442 (46%), Positives = 289/442 (65%), Gaps = 3/442 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           V  + +++     CG  + A ++FDE+P  ER+ ++WN+++ G+A  G+  E L +F   
Sbjct: 155 VFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRET 214

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D+  +  ++VSVL+AC  +GAL  GR  HV+  +  L     +G AL+D+Y+KCG +
Sbjct: 215 LEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGV 274

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             A   F  M   R V +WTS+I GLA NG G+ +LELF LM++  + P ++T V VL  
Sbjct: 275 EDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYA 334

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV++G  +F+ M+ +YGI P +EH GC+VDL GRAGR++EA + I  MP++P+A 
Sbjct: 335 CSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAV 394

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL AC M+K  E+GE A  +LVEL+  + G YVLLSN+YA    W     +R+ M 
Sbjct: 395 VWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMA 454

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             GV+K PG S++E+   V+EF  GD +HP  ++I   L EI+ RL+  GYV  T+ V+ 
Sbjct: 455 THGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLA 514

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DIEEEEKE  L  HSE++AIAF L+    G PIRIVKNLR+C DCH V K+ISKV++REI
Sbjct: 515 DIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREI 574

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRDR+RFHHFK G+CSCK YW
Sbjct: 575 IVRDRSRFHHFKGGECSCKDYW 596



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 6/219 (2%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           +P+ DP + N +L   A     R AL L H  ++     +  +   +L ACT L AL +G
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALAL-HRRRL--APPDTHTYPPLLQACTRLLALREG 139

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLA 166
              H    +N L   V +  +LV  Y  CG    A   F    + ERN+ +W SV+ G A
Sbjct: 140 ESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFA 199

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG   + L +F    +A + P+  T VSVL  C  +G +  GR        + G+    
Sbjct: 200 ANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRR-VHVFASKVGLVGNS 258

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                L+DLY + G +++A  V  +M +     +W +L+
Sbjct: 259 HVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLI 297


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/460 (43%), Positives = 294/460 (63%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   +   +++F+ +   ++     MI+   + GD+  ARK FD MP+RD ++W A++
Sbjct: 307 YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAII 366

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGYAQ G   EAL++F  ++     LN  +    LS C  + AL+ G+  H    +    
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
               +G AL+ MY KCG++++A D F G++E++V +W +++ G A +G G ++L +F  M
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K AGV+P+E+T V VL  C   GL++ G E+F SM ++YG+ P  +HY C++DL GRAGR
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGR 546

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA D+I  MP +P A +WGALL A R++ NTE+GE A+  + ++E +N G YVLLSN+
Sbjct: 547 LEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNL 606

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W     +R  M+  GV+K+PG S +EV  ++H F  GD +HP    I   L E+
Sbjct: 607 YAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEEL 666

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             +++  GYV+ T  V++D+EEEEKE  L  HSEK+A+AFG++++  G PIR++KNLRVC
Sbjct: 667 DLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVC 726

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K ISK+  R II+RD +RFHHF EG CSC  YW
Sbjct: 727 EDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 18/258 (6%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           LG  +++FD + E DVV   +++S  A+ G VD AR++FD MPE++ I+WN +LA Y   
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+  EA  LF      D+    +S   ++        L   RW     ++  ++  ++  
Sbjct: 187 GRIEEACLLFESKSDWDL----ISWNCLMGGFVRKKKLGDARW---LFDKMPVRDAISWN 239

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T ++  Y++ G +++A   F     R+V+TWT+++ G   NG  +++   F  M +    
Sbjct: 240 T-MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE---- 294

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            NEV++ +++ G      ++  RE F+SM     I  W      ++  YG+ G + +A  
Sbjct: 295 KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-NISSW----NTMITGYGQIGDIAQARK 349

Query: 248 VINKMPMKPHAGAWGALL 265
             + MP +    +W A++
Sbjct: 350 FFDMMPQRDCV-SWAAII 366



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 43/265 (16%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+ G L   +++FD     DV   TAM+S   + G +D A+  FDEMPE++ +++NAM+
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMI 304

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGY Q  K   A  LF  M   ++                        W           
Sbjct: 305 AGYVQTKKMDIARELFESMPCRNIS----------------------SW----------- 331

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
                   ++  Y + G++ +A  FF  M +R+  +W ++I G A +G  E++L +F  +
Sbjct: 332 ------NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           KQ G   N  TF   L  C  +  +E G++ H  +++  YG   ++ +   L+ +Y + G
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCG 443

Query: 241 RLDEALDVINKMPMKPHAGAWGALL 265
            +DEA D    +  K    +W  +L
Sbjct: 444 SIDEANDTFEGIEEKDVV-SWNTML 467



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 151/346 (43%), Gaps = 51/346 (14%)

Query: 9   GYCQK---VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G+C     VF+ +     V   AMIS   +    +LAR +FD+MPERD  +WN ML GY 
Sbjct: 63  GHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYV 122

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-------------WAH 112
           +  +  +A  LF LM   DV    VS  S+LS     G +D+ R             W  
Sbjct: 123 RNCRLGDARRLFDLMPEKDV----VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG 178

Query: 113 V---YIERNRLKMTVTLGTA-----------LVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           +   Y+   R++    L  +           L+  + +   +  A   F  M  R+  +W
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
            ++I G A  G   ++  LF       V     T+ +++ G    G+++E +  FD M  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           +  +      Y  ++  Y +  ++D A ++   MP + +  +W  ++         ++G+
Sbjct: 295 KNEVS-----YNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGY-----GQIGD 343

Query: 279 LA-SRKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           +A +RK  + +  ++  ++  +   YA+S +++  +N+   +K  G
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 129/292 (44%), Gaps = 21/292 (7%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           + +PD++     IS   + G  D A  +F+ MP R  +++NAM++GY +  K   A +LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M   D+    V +   +  C  LG  D  R   +  E++     V    +L+  Y++ 
Sbjct: 104 DQMPERDLFSWNVMLTGYVRNC-RLG--DARRLFDLMPEKD-----VVSWNSLLSGYAQN 155

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +++A + F  M E+N  +W  ++     NG  E++  LF    ++    + +++  ++
Sbjct: 156 GYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF----ESKSDWDLISWNCLM 211

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            G      + + R  FD M     I      +  ++  Y + G L +A  + ++ P +  
Sbjct: 212 GGFVRKKKLGDARWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRLFDESPTRD- 265

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
              W A+++    Y    M + A     E+  KN  +Y  +   Y ++K  D
Sbjct: 266 VFTWTAMVSG---YVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/460 (43%), Positives = 294/460 (63%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   +   +++F+ +   ++     MI+   + GD+  ARK FD MP+RD ++W A++
Sbjct: 307 YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAII 366

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGYAQ G   EAL++F  ++     LN  +    LS C  + AL+ G+  H    +    
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
               +G AL+ MY KCG++++A D F G++E++V +W +++ G A +G G ++L +F  M
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K AGV+P+E+T V VL  C   GL++ G E+F SM ++YG+ P  +HY C++DL GRAGR
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGR 546

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA D+I  MP +P A +WGALL A R++ NTE+GE A+  + ++E +N G YVLLSN+
Sbjct: 547 LEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNL 606

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W     +R  M+  GV+K+PG S +EV  ++H F  GD +HP    I   L E+
Sbjct: 607 YAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEEL 666

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             +++  GYV+ T  V++D+EEEEKE  L  HSEK+A+AFG++++  G PIR++KNLRVC
Sbjct: 667 DLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVC 726

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K ISK+  R II+RD +RFHHF EG CSC  YW
Sbjct: 727 EDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 123/260 (47%), Gaps = 57/260 (21%)

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            GL++ G E+F  M  EY + P  +HY C++DL GR  RL+E                 G
Sbjct: 777 TGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE-----------------G 819

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           ALL A R++ NTE+GE A++   ++  +N G           SK           M+  G
Sbjct: 820 ALLGASRIHGNTELGEKAAQMFFKMGPQNSGI----------SK-----------MRDVG 858

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           V+K+PG S  EV  ++H F  G                +SR  +  G++   +  M    
Sbjct: 859 VQKVPGYSWFEVQNKIHTFSVGL--------------FLSRERENIGFLEELDLKM-RER 903

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN-LRVCWDCHDVTKMISKVFNREIIV 441
           EEEKE TL   SE +A A G++++  G P R++K  + VC DC    K +SK+  R I +
Sbjct: 904 EEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITL 963

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD    H F E  CSC  YW
Sbjct: 964 RDS---HRFNESICSCGEYW 980



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 18/258 (6%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           LG  +++FD + E DVV   +++S  A+ G VD AR++FD MPE++ I+WN +LA Y   
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+  EA  LF      D+    +S   ++        L   RW     ++  ++  ++  
Sbjct: 187 GRIEEACLLFESKSDWDL----ISWNCLMGGFVRKKKLGDARW---LFDKMPVRDAISWN 239

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T ++  Y++ G +++A   F     R+V+TWT+++ G   NG  +++   F  M +    
Sbjct: 240 T-MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE---- 294

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            NEV++ +++ G      ++  RE F+SM     I  W      ++  YG+ G + +A  
Sbjct: 295 KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-NISSW----NTMITGYGQIGDIAQARK 349

Query: 248 VINKMPMKPHAGAWGALL 265
             + MP +    +W A++
Sbjct: 350 FFDMMPQRDCV-SWAAII 366



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 43/265 (16%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+ G L   +++FD     DV   TAM+S   + G +D A+  FDEMPE++ +++NAM+
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMI 304

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGY Q  K   A  LF  M   ++                        W           
Sbjct: 305 AGYVQTKKMDIARELFESMPCRNIS----------------------SW----------- 331

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
                   ++  Y + G++ +A  FF  M +R+  +W ++I G A +G  E++L +F  +
Sbjct: 332 ------NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           KQ G   N  TF   L  C  +  +E G++ H  +++  YG   ++ +   L+ +Y + G
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCG 443

Query: 241 RLDEALDVINKMPMKPHAGAWGALL 265
            +DEA D    +  K    +W  +L
Sbjct: 444 SIDEANDTFEGIEEKDVV-SWNTML 467



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 151/346 (43%), Gaps = 51/346 (14%)

Query: 9   GYCQK---VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G+C     VF+ +     V   AMIS   +    +LAR +FD+MPERD  +WN ML GY 
Sbjct: 63  GHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYV 122

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-------------WAH 112
           +  +  +A  LF LM   DV    VS  S+LS     G +D+ R             W  
Sbjct: 123 RNCRLGDARRLFDLMPEKDV----VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG 178

Query: 113 V---YIERNRLKMTVTLGTA-----------LVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           +   Y+   R++    L  +           L+  + +   +  A   F  M  R+  +W
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
            ++I G A  G   ++  LF       V     T+ +++ G    G+++E +  FD M  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           +  +      Y  ++  Y +  ++D A ++   MP + +  +W  ++         ++G+
Sbjct: 295 KNEVS-----YNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGY-----GQIGD 343

Query: 279 LA-SRKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           +A +RK  + +  ++  ++  +   YA+S +++  +N+   +K  G
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 129/292 (44%), Gaps = 21/292 (7%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           + +PD++     IS   + G  D A  +F+ MP R  +++NAM++GY +  K   A +LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M   D+    V +   +  C  LG  D  R   +  E++     V    +L+  Y++ 
Sbjct: 104 DQMPERDLFSWNVMLTGYVRNC-RLG--DARRLFDLMPEKD-----VVSWNSLLSGYAQN 155

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +++A + F  M E+N  +W  ++     NG  E++  LF    ++    + +++  ++
Sbjct: 156 GYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF----ESKSDWDLISWNCLM 211

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            G      + + R  FD M     I      +  ++  Y + G L +A  + ++ P +  
Sbjct: 212 GGFVRKKKLGDARWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRLFDESPTR-D 265

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
              W A+++    Y    M + A     E+  KN  +Y  +   Y ++K  D
Sbjct: 266 VFTWTAMVSG---YVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 289/466 (62%), Gaps = 7/466 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNA 59
           Y+   CL      F G  E D++   A+I   +KC     AR +FD++P  ER+ + W  
Sbjct: 426 YSLKNCLLTLDNDFGGEDE-DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 484

Query: 60  MLAGYAQCGKSREALHLFHLM--QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           M+ G+AQ G S +AL LF  M  + + V  N  ++  +L AC HL A+  G+  H Y+ R
Sbjct: 485 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 544

Query: 118 NRLKMTVTLGTA--LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           +    +     A  L+DMYSKCG+++ A   F  M +++  +WTS++ G  M+G G ++L
Sbjct: 545 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 604

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           ++F  M++AG  P+++TF+ VL  C   G+V++G  +FDSM  +YG+ P  EHY C +DL
Sbjct: 605 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 664

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             R+GRLD+A   +  MPM+P A  W ALL+ACR++ N E+ E A  KLVE+  +N G+Y
Sbjct: 665 LARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSY 724

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
            L+SNIYA +  W  V  +R +MK  G+KK PGCS ++  +    FF GD +HP   +I 
Sbjct: 725 TLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIY 784

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            +L  +  R+K  GYV  TN  ++D++EEEK + L +HSEK+A+A+GL++   G PIRI 
Sbjct: 785 ALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRIT 844

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH     ISK+ + EI+VRD +RFHHFK G CSC GYW
Sbjct: 845 KNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 145/289 (50%), Gaps = 20/289 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
           YA+ G +    KVF+ +   DVV   AM++  ++ G+ + A ++F  M +     D + W
Sbjct: 310 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 369

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
            A++AGY+Q G S EAL+LF  M       N V+++SVLSAC  LGA  QG   H Y  +
Sbjct: 370 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 429

Query: 118 N-RLKMTVTLG---------TALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGL 165
           N  L +    G          AL+DMYSKC +   A   F    ++ERNV TWT +IGG 
Sbjct: 430 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 489

Query: 166 AMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223
           A  G    +L+LF  M  +  GV PN  T   +L  C  +  +  G++    + R +  E
Sbjct: 490 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE 549

Query: 224 PWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
                   CL+D+Y + G +D A  V + M  K  A +W +++    M+
Sbjct: 550 SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS-AISWTSMMTGYGMH 597



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 155/342 (45%), Gaps = 62/342 (18%)

Query: 11  CQKVFDGI-----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLA 62
           C   F G+      E +V    A+++  ++CG ++ A  +FDE+ +R   D I+WN++++
Sbjct: 173 CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVS 232

Query: 63  GYAQCGKSREALHLFHLMQ--IHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIE 116
            + +   +  AL LF  M   +H+   NE    +S+V++L AC  L A+ Q +  H    
Sbjct: 233 AHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAI 292

Query: 117 RNRLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMD 145
           RN     V +G AL+D Y+KC                               GN   A +
Sbjct: 293 RNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFE 352

Query: 146 FFWGMKERN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            F  M++ N    V TWT+VI G +  G   ++L LF  M  +G  PN VT +SVL  C 
Sbjct: 353 LFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACA 412

Query: 202 VVGLVEEGRE-HFDSMR-------REYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM 252
            +G   +G E H  S++        ++G E   L  Y  L+D+Y +      A  + + +
Sbjct: 413 SLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDI 472

Query: 253 PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           P++  +   W  ++     Y ++     A +  VE+ ++ +G
Sbjct: 473 PLEERNVVTWTVMIGGHAQYGDSND---ALKLFVEMISEPYG 511



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 145/337 (43%), Gaps = 20/337 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++++   CG  D A  + + +     + WN ++  + + G+   A+++   M     +
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  ++  VL AC  L +   G   H  I  N  +  V +  ALV MYS+CG++ +A   
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 147 FWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLM------KQAGVRPNEVTFVSVL 197
           F  + +R   +V +W S++     +     +L+LFS M      K    R + ++ V++L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +  V + +E H +++R   G  P +     L+D Y + G ++ A+ V N M  K 
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 329

Query: 257 HAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
              +W A++       N E   EL      E    +   +  +   Y++       +N+ 
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 316 QIMKAKGVKKLPGC----SVIEVDREVHEFFAGDETH 348
           + M   G   LP C    SV+     +  F  G E H
Sbjct: 390 RQMIFSG--SLPNCVTIISVLSACASLGAFSQGTEIH 424


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/449 (45%), Positives = 297/449 (66%), Gaps = 1/449 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++FD +    VV   ++++   + G+VD A + F+ MPE++ ++WN +++G  Q     E
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452

Query: 73  ALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           A+ +F  MQ  + V  + V+M+S+ SAC HLGALD  +W + YIE+N +++ V LGT LV
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DM+S+CG+   AM  F  +  R+V  WT+ IG +AM G  E+++ELF  M + G++P+ V
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            FV  L  C   GLV++G+E F SM + +G+ P   HYGC+VDL GRAG L+EA+ +I  
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MPM+P+   W +LL ACR+  N EM   A+ K+  L  +  G+YVLLSN+YA +  W+ +
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR  MK KG++K PG S I++  + HEF +GDE+HP    IE ML E+S+R    G+V
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            + + V+ D++E+EK   L +HSEK+A+A+GLIS  +G  IRIVKNLRVC DCH   K  
Sbjct: 753 PDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFA 812

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           SKV+NREII+RD NRFH+ ++GKCSC  +
Sbjct: 813 SKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 130/238 (54%), Gaps = 2/238 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF- 77
           +  D+  Q +++   A+CG++D ARK+FDEM ER+ ++W +M+ GYA+   +++A+ LF 
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +++  +V  N V+MV V+SAC  L  L+ G   + +I  + +++   + +ALVDMY KC
Sbjct: 225 RMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC 284

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
             ++ A   F      N+    ++       G   ++L +F+LM  +GVRP+ ++ +S +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             C  +  +  G+     + R  G E W      L+D+Y +  R D A  + ++M  K
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 135/298 (45%), Gaps = 44/298 (14%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACA----KCGDVDLARKMFDEMPERDPIAWN 58
           A+L  L   +KV+  I    +     M+SA      KC  +D+A+++FDE    +    N
Sbjct: 247 AKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM + Y + G +REAL +F+LM    V+ + +SM+S +S+C+ L  +  G+  H Y+ RN
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             +    +  AL+DMY KC   + A   F  M  + V TW S++ G   NG  + + E F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-------------- 224
             M +  +    V++ +++ G     L EE  E F SM+ + G+                
Sbjct: 427 ETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGH 482

Query: 225 --------WLEHY-------------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
                   W+ +Y               LVD++ R G  + A+ + N +  +    AW
Sbjct: 483 LGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR-DVSAW 539



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 2/190 (1%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           +N+++ GYA  G   EA+ LF  M    +  ++ +    LSAC    A   G   H  I 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           +      + +  +LV  Y++CG ++ A   F  M ERNV +WTS+I G A     + +++
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 177 L-FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           L F +++   V PN VT V V+  C  +  +E G + + +  R  GIE        LVD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDM 280

Query: 236 YGRAGRLDEA 245
           Y +   +D A
Sbjct: 281 YMKCNAIDVA 290


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/460 (46%), Positives = 287/460 (62%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y  +G L    ++FD + + D     ++I+   K GD+  A+++F +MPE++ ++W  M+
Sbjct: 220 YCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMV 279

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            G++Q G   +AL  F  M     + N+ ++VS LSAC  +GALD G   H Y+  N  K
Sbjct: 280 NGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFK 339

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + + +GTALVDMY+KCGN+  A   F   KE+ +  W+ +I G A++G   K+L+ F  M
Sbjct: 340 LNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWM 399

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K  G +P+ V F++VL  C   G V EG + FD+MRR Y IEP ++HY  +VD+ GRAGR
Sbjct: 400 KFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGR 459

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           LDEAL  I  MP+ P    WGAL  ACR +KN EM ELAS+KL++LE K+ G+YV LSN 
Sbjct: 460 LDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNA 519

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA    WD    VR  M+  G  K PG S IEVD ++H F AGD TH R  EI   L EI
Sbjct: 520 YASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEI 579

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
           S   +  GY      V+++IEEEEKE+ L  HSEK+A+AFG++S + G  +RIVKNLRVC
Sbjct: 580 SASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVC 639

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K  SK+  REII+RD  RFHHF +G CSC  YW
Sbjct: 640 VDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 67/295 (22%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T  IS+C+    VD A  +F     ++   +NA++ G A+  +   ++  F LM    + 
Sbjct: 78  TQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKIS 137

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC--------- 137
            + ++   VL +   L     GR  H  I +  L+    +  +LVDMY K          
Sbjct: 138 PDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKV 197

Query: 138 --------------------------GNMNKAMDFFWGMKERNVYTW------------- 158
                                     G++ KA + F  M +++  +W             
Sbjct: 198 FDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDM 257

Query: 159 ------------------TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
                             T+++ G + NG  EK+LE F  M + G RPN+ T VS L  C
Sbjct: 258 GRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSAC 317

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             +G ++ G    + +    G +  L     LVD+Y + G ++ A  V ++   K
Sbjct: 318 AKIGALDAGLRIHNYLSGN-GFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEK 371



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 112/265 (42%), Gaps = 54/265 (20%)

Query: 130 LVDMYSKCGNMNK---AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
           +    S C ++N    A+  F   + +N Y + ++I GLA N   E S+  F LM +  +
Sbjct: 77  VTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKI 136

Query: 187 RPNEVTFVSVLRGCCVV-----------GLVEEGREHFDSMRREYGIEPWLE-------- 227
            P+ +TF  VL+    +           G+++ G E FDS  R   ++ +++        
Sbjct: 137 SPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLE-FDSFVRVSLVDMYVKVEELGSAL 195

Query: 228 ----------------HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
                            +  L+  Y R G L +A ++ + MP K   G+W +L+N     
Sbjct: 196 KVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMP-KKDTGSWNSLING--FM 252

Query: 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG--------V 323
           K  +MG  A    V++  KN  ++  + N ++++ + ++ +     M  +G        V
Sbjct: 253 KMGDMGR-AKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIV 311

Query: 324 KKLPGCSVI---EVDREVHEFFAGD 345
             L  C+ I   +    +H + +G+
Sbjct: 312 SALSACAKIGALDAGLRIHNYLSGN 336


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 289/436 (66%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
             A++   AK GD+D A  +F++M E+D I+W +++ GYAQ     E+L +F  M++  V
Sbjct: 402 SNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGV 461

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             ++  + S+LSAC  L  L+ G+  H+   ++ L+ + ++  +LV MY+KCG ++ A  
Sbjct: 462 NPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADA 521

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M+ ++V TWT++I G A NG G  SL+ +  M  +G RP+ +TF+ +L  C   GL
Sbjct: 522 IFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGL 581

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V+EGR++F  M + YGI+P  EHY C++DL+GR+G+LDEA  ++++M +KP A  W +LL
Sbjct: 582 VDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLL 641

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           +ACR+++N E+ E A+  L ELE  N   YV+LSN+Y+ S+ W+ V  +R++MK+KG+ K
Sbjct: 642 SACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVK 701

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PGCS +E++  V+ F + D  HPR  EI   + EI  R+K AGYV + +  ++D+++E 
Sbjct: 702 EPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEG 761

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSEK+A+AFGL++     PIRI KNLRVC DCH   K IS+VF R II+RD N
Sbjct: 762 KEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSN 821

Query: 446 RFHHFKEGKCSCKGYW 461
            FHHF+EG+CSC  YW
Sbjct: 822 CFHHFREGECSCGDYW 837



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 6/245 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V  Q+A++   AKCGD+  A+ M + M + D ++WN+++ G+ + G   EAL LF  M 
Sbjct: 299 NVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMH 358

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++K+++ +  SVL+ C  +G+++  +  H  I +   +    +  ALVDMY+K G+M+
Sbjct: 359 GRNMKIDDYTFPSVLNCCV-VGSINP-KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMD 416

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M E++V +WTS++ G A N + E+SL++F  M+  GV P++    S+L  C 
Sbjct: 417 CAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACA 476

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            + L+E G++ H D ++   G+      Y  LV +Y + G LD+A  +   M +K     
Sbjct: 477 ELTLLEFGKQVHLDFIKS--GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVIT 533

Query: 261 WGALL 265
           W A++
Sbjct: 534 WTAII 538



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 129/250 (51%), Gaps = 6/250 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           E +V   T ++   AKC  V  A  +F   E   ++ + W AM+ GYAQ G   +A+  F
Sbjct: 194 EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFF 253

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M    V+ N+ +  ++L+AC+ + A   G   H +I ++     V + +ALVDMY+KC
Sbjct: 254 RYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKC 313

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A +    M++ +V +W S++ G   +G  E++L LF  M    ++ ++ TF SVL
Sbjct: 314 GDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVL 373

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             CCVVG +     H   +  + G E +      LVD+Y + G +D A  V  KM ++  
Sbjct: 374 -NCCVVGSINPKSVH--GLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKD 429

Query: 258 AGAWGALLNA 267
             +W +L+  
Sbjct: 430 VISWTSLVTG 439



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 47/289 (16%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK------------------- 69
           +++  +K G V+ ARK+FD+MP++D  +WN M++ Y   G+                   
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW 130

Query: 70  ------------SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
                         EA  LF  M++   K ++ ++ SVL  C+ LG +  G   H ++ +
Sbjct: 131 SSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVK 190

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSL 175
           N  +  V + T LVDMY+KC  +++A   F G++   +N   WT+++ G A NG G K++
Sbjct: 191 NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAV 250

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVD 234
           E F  M   GV  N+ TF ++L  C  V     G + H   ++  +G   +++    LVD
Sbjct: 251 EFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ--SALVD 308

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALL----------NACRMYKN 273
           +Y + G L  A +++  M       +W +L+           A R++KN
Sbjct: 309 MYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHGLEEEALRLFKN 356


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/464 (41%), Positives = 301/464 (64%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFD--GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           MYA+ G +   +++ +  GI + DV+  TA+++   K GD+  AR++F+ + + D +AW 
Sbjct: 284 MYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWT 343

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GY Q G + +A+ +F  M     + N  ++ ++LSA + + +L+ G+  H    R+
Sbjct: 344 AMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRS 403

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLEL 177
              ++ ++G AL  MY+K G++N A   F  +++ R+  +WTS+I  LA +G GE+++EL
Sbjct: 404 GEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIEL 463

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M   G++P+ +T+V VL  C   GLVE+GR +FD M+  + I+P L HY C+VDL+G
Sbjct: 464 FEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFG 523

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG L EA   +  MPM+P   AWG+LL++C++YKN ++ ++A+ +L+ +E  N GAY  
Sbjct: 524 RAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSA 583

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+N+Y+    WD    +R++MKA+GVKK  G S +++  + H F   D  HP+ +EI  M
Sbjct: 584 LANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKM 643

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + +I + +K  G+  +T  V++D+E E K+  L  HSEK+AIAFG+IS  E   +RI+KN
Sbjct: 644 MDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKN 703

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH+  K ISK+ +REIIVRD  RFHHFK+G CSCK YW
Sbjct: 704 LRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 37/302 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   + VFD +   +     AMIS    CG VDLA   F+ + ERD ++WN+M
Sbjct: 151 MYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSM 210

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AG  Q G   EAL  F  +++   +K +  S+ S LSAC +L  L  G+  H YI R  
Sbjct: 211 IAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTM 270

Query: 120 LKMTVTLGTALVDMYSKC---------------------------------GNMNKAMDF 146
              +  +G AL+ MY+K                                  G++  A   
Sbjct: 271 FDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQI 330

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +K+ +V  WT++I G   NG    ++E+F  M   G RPN  T  ++L     V  +
Sbjct: 331 FNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSL 390

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             G++ H  ++R    + P + +   L  +Y +AG ++ A  V N +       +W +++
Sbjct: 391 NHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMI 448

Query: 266 NA 267
            A
Sbjct: 449 MA 450



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G       +F+ +          ++S  AK G ++ A ++FD +P RD ++W  +
Sbjct: 19  LYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTI 78

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G+  +A+ +F  M    V   + ++ +VL++C   G+   G+  H ++ +  L
Sbjct: 79  IVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGL 138

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN-GAGEKSLELFS 179
              V +  +L++MY+K G++  A   F  MK RN  +W ++I  L MN G  + +L  F 
Sbjct: 139 HACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI-SLHMNCGRVDLALAQFE 197

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
           L+ +  +    V++ S++ GC   G   E  + F S+ ++  ++P
Sbjct: 198 LLSERDI----VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 33/178 (18%)

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L  +V L   L+++Y+K G    A D F  M  +  ++W +++ G A  G  EK+ ++F 
Sbjct: 6   LTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFD 65

Query: 180 L-------------------------------MKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           L                               M +  V P + T  +VL  C   G    
Sbjct: 66  LIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGI 125

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           G++   S   + G+   +     L+++Y + G L  A  V ++M ++ +  +W A+++
Sbjct: 126 GKK-VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNAMIS 181


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 289/466 (62%), Gaps = 7/466 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNA 59
           Y+   CL      F G  E D++   A+I   +KC     AR +FD++P  ER+ + W  
Sbjct: 433 YSLKNCLLTLDNDFGGEDE-DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 491

Query: 60  MLAGYAQCGKSREALHLFHLM--QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           M+ G+AQ G S +AL LF  M  + + V  N  ++  +L AC HL A+  G+  H Y+ R
Sbjct: 492 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 551

Query: 118 NRLKMTVTLGTA--LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           +    +     A  L+DMYSKCG+++ A   F  M +++  +WTS++ G  M+G G ++L
Sbjct: 552 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 611

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           ++F  M++AG  P+++TF+ VL  C   G+V++G  +FDSM  +YG+ P  EHY C +DL
Sbjct: 612 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 671

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             R+GRLD+A   +  MPM+P A  W ALL+ACR++ N E+ E A  KLVE+  +N G+Y
Sbjct: 672 LARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSY 731

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
            L+SNIYA +  W  V  +R +MK  G+KK PGCS ++  +    FF GD +HP   +I 
Sbjct: 732 TLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIY 791

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            +L  +  R+K  GYV  TN  ++D++EEEK + L +HSEK+A+A+GL++   G PIRI 
Sbjct: 792 ALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRIT 851

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH     ISK+ + EI+VRD +RFHHFK G CSC GYW
Sbjct: 852 KNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 145/289 (50%), Gaps = 20/289 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
           YA+ G +    KVF+ +   DVV   AM++  ++ G+ + A ++F  M +     D + W
Sbjct: 317 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 376

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
            A++AGY+Q G S EAL+LF  M       N V+++SVLSAC  LGA  QG   H Y  +
Sbjct: 377 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 436

Query: 118 N-RLKMTVTLG---------TALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGL 165
           N  L +    G          AL+DMYSKC +   A   F    ++ERNV TWT +IGG 
Sbjct: 437 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 496

Query: 166 AMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223
           A  G    +L+LF  M  +  GV PN  T   +L  C  +  +  G++    + R +  E
Sbjct: 497 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE 556

Query: 224 PWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
                   CL+D+Y + G +D A  V + M  K  A +W +++    M+
Sbjct: 557 SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS-AISWTSMMTGYGMH 604



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 155/342 (45%), Gaps = 62/342 (18%)

Query: 11  CQKVFDGI-----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLA 62
           C   F G+      E +V    A+++  ++CG ++ A  +FDE+ +R   D I+WN++++
Sbjct: 180 CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVS 239

Query: 63  GYAQCGKSREALHLFHLMQ--IHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIE 116
            + +   +  AL LF  M   +H+   NE    +S+V++L AC  L A+ Q +  H    
Sbjct: 240 AHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAI 299

Query: 117 RNRLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMD 145
           RN     V +G AL+D Y+KC                               GN   A +
Sbjct: 300 RNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFE 359

Query: 146 FFWGMKERN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            F  M++ N    V TWT+VI G +  G   ++L LF  M  +G  PN VT +SVL  C 
Sbjct: 360 LFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACA 419

Query: 202 VVGLVEEGRE-HFDSMR-------REYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM 252
            +G   +G E H  S++        ++G E   L  Y  L+D+Y +      A  + + +
Sbjct: 420 SLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDI 479

Query: 253 PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           P++  +   W  ++     Y ++     A +  VE+ ++ +G
Sbjct: 480 PLEERNVVTWTVMIGGHAQYGDSND---ALKLFVEMISEPYG 518



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 13/259 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++++   CG  D A  + + +     + WN ++  + + G+   A+++   M     +
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  ++  VL AC  L +   G   H  I  N  +  V +  ALV MYS+CG++ +A   
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 147 FWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLM------KQAGVRPNEVTFVSVL 197
           F  + +R   +V +W S++     +     +L+LFS M      K    R + ++ V++L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +  V + +E H +++R   G  P +     L+D Y + G ++ A+ V N M  K 
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 336

Query: 257 HAGAWGALLNACRMYKNTE 275
              +W A++       N E
Sbjct: 337 DVVSWNAMVAGYSQSGNFE 355


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/453 (43%), Positives = 291/453 (64%), Gaps = 3/453 (0%)

Query: 10  YCQKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           +  K+ D +  + +V    ++IS  +KC  VD+A  +F+ + E+  + WNAM+ GYAQ G
Sbjct: 368 FVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNG 426

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
             +EAL+LF +MQ   +KL+  ++V V++A        Q +W H    R  +   V + T
Sbjct: 427 CVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVST 486

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALVDMY+KCG +  A   F  M+ER+V TW ++I G   +G G+++L+LF+ M++  V+P
Sbjct: 487 ALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKP 546

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           N++TF+SV+  C   G VEEG   F SM+ +Y +EP ++HY  +VDL GRAG+LD+A + 
Sbjct: 547 NDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNF 606

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I +MP+KP     GA+L AC+++KN E+GE A++KL +L+    G +VLL+NIYA +  W
Sbjct: 607 IQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMW 666

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
           D+V  VR  M+ KG+ K PGCS +E+  E+H F++G   HP   +I   L  +   +K A
Sbjct: 667 DKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAA 726

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GYV + + + +D+EE+ K+  L  HSE++AIAFGL++   G  + I KNLRVC DCHD T
Sbjct: 727 GYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTT 785

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K IS V  REIIVRD  RFHHFK G CSC  YW
Sbjct: 786 KYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 123/236 (52%), Gaps = 7/236 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++   TA++S  AKC  +D A KMF+ M  +D ++W  ++AGYAQ G ++ AL L   
Sbjct: 177 ESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQ 236

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ    K + V++VS+L A   + AL  GR  H Y  R+  +  V +  AL+DMY KCG+
Sbjct: 237 MQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGS 296

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
              A   F GM+ + V +W ++I G A NG  E++   F  M   G  P  VT + VL  
Sbjct: 297 ARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLA 356

Query: 200 CCVVGLVEEG---REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           C  +G +E G    +  D ++ +  +         L+ +Y +  R+D A  + N +
Sbjct: 357 CANLGDLERGWFVHKLLDKLKLDSNVSVM----NSLISMYSKCKRVDIAASIFNNL 408



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 163/355 (45%), Gaps = 55/355 (15%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  V    A++    KCG   +AR +F  M  +  ++WN M+ G AQ G+S EA   F  
Sbjct: 278 ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M         V+M+ VL AC +LG L++G + H  +++ +L   V++  +L+ MYSKC  
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL-- 197
           ++ A   F  +++ NV TW ++I G A NG  +++L LF +M+  G++ +  T V V+  
Sbjct: 398 VDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 198 ------------------RGC---------------CVVGLVEEGREHFDSMRREYGIEP 224
                             R C                  G ++  R+ FD M+  + I  
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVIT- 515

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELAS 281
               +  ++D YG  G   E LD+ N+M    +KP+   + ++++AC      E G L  
Sbjct: 516 ----WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLF 571

Query: 282 RKLVE---LE-TKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVI 332
           + + E   LE T +H  Y  + ++   +   D   N  Q M  K     PG SV+
Sbjct: 572 KSMQEDYYLEPTMDH--YSAMVDLLGRAGQLDDAWNFIQEMPIK-----PGISVL 619



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 4/251 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT +IS   K G    A ++F+ +  +  + ++ ML GYA+     +AL  F  M   +V
Sbjct: 82  QTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEV 141

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           +L       +L  C     L +GR  H  I  N  +  + + TA++ +Y+KC  ++ A  
Sbjct: 142 RLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYK 201

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M+ +++ +WT+++ G A NG  +++L+L   M++AG +P+ VT VS+L     +  
Sbjct: 202 MFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKA 261

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  GR  H  + R   G E  +     L+D+Y + G    A  V   M  K    +W  +
Sbjct: 262 LRIGRSIHGYAFRS--GFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKT-VVSWNTM 318

Query: 265 LNACRMYKNTE 275
           ++ C     +E
Sbjct: 319 IDGCAQNGESE 329


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 288/442 (65%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +V    A+I+   KC   DLA ++FDE+  +  ++WNAM+ G  Q G S +A+ LF  
Sbjct: 460 ESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSR 519

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ+ +VK +  ++VS++ A   +    Q RW H Y  R  L   V + TAL+DMY+KCG 
Sbjct: 520 MQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGR 579

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F   ++R+V TW ++I G   +G+G+ ++ELF  MK +G  PNE TF+SVL  
Sbjct: 580 VSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSA 639

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG+E+F SM+ +YG+EP +EHYG +VDL GRAG+L EA   I KMPM+P   
Sbjct: 640 CSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGIS 699

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            +GA+L AC+++KN E+ E +++++ ELE +    +VLL+NIYA +  W  V  VR  M+
Sbjct: 700 VYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAME 759

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG++K PG S++++  E+H F++G   H +  +I   L ++   +K  GYV +T+ + +
Sbjct: 760 KKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-H 818

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E++ K   L  HSEK+AIA+GLI    G  I+I KNLRVC DCH+ TK+IS V  REI
Sbjct: 819 DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREI 878

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD  RFHHFK+GKCSC  YW
Sbjct: 879 IMRDIQRFHHFKDGKCSCGDYW 900



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 153/286 (53%), Gaps = 6/286 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            P+ +  TA+ +  AKC     AR++FD MP RD +AWNA++AGYA+ G +  A+ +   
Sbjct: 257 SPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVR 316

Query: 80  MQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ  D  + + V++VSVL AC    AL   R  H +  R      V + TA++D+Y KCG
Sbjct: 317 MQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCG 376

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A   F GM++RN  +W ++I G A NG   ++L LF  M   GV   +V+ ++ L 
Sbjct: 377 AVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALH 436

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +G ++EGR   + + R  G+E  +     L+ +Y +  R D A  V +++  K   
Sbjct: 437 ACGELGFLDEGRRVHELLVR-IGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV 495

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYA 303
            +W A++  C    ++E    L SR  ++LE     ++ L+S I A
Sbjct: 496 -SWNAMILGCTQNGSSEDAVRLFSR--MQLENVKPDSFTLVSIIPA 538



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 151/293 (51%), Gaps = 11/293 (3%)

Query: 3   AELGCLGYCQKV----FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+   LG C++V      G  +  V   TA++    KCG VD ARK+FD M +R+ ++WN
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWN 397

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GYA+ G + EAL LF  M    V + +VS+++ L AC  LG LD+GR  H  + R 
Sbjct: 398 AMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRI 457

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L+  V +  AL+ MY KC   + A   F  +  +   +W ++I G   NG+ E ++ LF
Sbjct: 458 GLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLF 517

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYG 237
           S M+   V+P+  T VS++     +    + R  H  S+R     + ++     L+D+Y 
Sbjct: 518 SRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYV--LTALIDMYA 575

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
           + GR+  A  + N    + H   W A+++    Y +   G++A     E+++ 
Sbjct: 576 KCGRVSIARSLFNSARDR-HVITWNAMIHG---YGSHGSGKVAVELFEEMKSS 624



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +  S+L  C     L  GR  H  +    L       TAL +MY+KC     A   F  M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEG 209
             R+   W +++ G A NG  E ++ +   M++  G RP+ VT VSVL  C     +   
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           RE H  ++R   G +  +     ++D+Y + G +D A  V + M  + ++ +W A++
Sbjct: 347 REVHAFAVRG--GFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDR-NSVSWNAMI 400


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/464 (44%), Positives = 293/464 (63%), Gaps = 5/464 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEP---DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
            Y   G +   +KVFD +  P   DVV   A+++   + G V +AR++FD MP RD ++W
Sbjct: 176 FYGVCGDVAAMRKVFDEL--PIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSW 233

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           + ++ GY + G+   AL +F  M    VK NE ++V+ LSA   LG L+QG++ H  ++R
Sbjct: 234 STVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKR 293

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             + M+V LG AL+DMYSKCG++  A + F  M  R+V+ W S+I GLA +G G  +++L
Sbjct: 294 VGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQL 353

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F      G  P  +TFV VL  C   GLV+EGR +F  M  +Y IE  +EHYGC+VDL  
Sbjct: 354 FEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLS 413

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG + EA+++I  M + P    WG +L+AC+ +   ++G     KL+EL+  + G YVL
Sbjct: 414 RAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVL 473

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L++IYA++K WD V  VR++M  +G  K  G S++E    VH+F  GD  H     I  M
Sbjct: 474 LASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNM 533

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L  I+RRL  AGYV + + V++DI +EEK   +  HSE++AIA+G I ++ G PIRIVKN
Sbjct: 534 LCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKN 593

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           L VC DCH+ +KM++KVF REI+VRD +RFHH K+GKCSC  YW
Sbjct: 594 LSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 287/442 (64%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +   QT+++    KCG +D A K+F+E+  RD + W+A++AG+A+ G++ E++ +F  
Sbjct: 247 DSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQ 306

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V  N V+  S++ AC+ LG+L QGR  H Y+ RN +++ V   T+ +DMY+KCG 
Sbjct: 307 MLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGC 366

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + E+NV++W+++I G  M+G   ++L LF  M+     PN VTFVSVL  
Sbjct: 367 IVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSA 426

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G +EEG  HF SM R+YGI P  EHY C+VDL GRAG++DEAL  IN MP +P A 
Sbjct: 427 CSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGAS 486

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           AWGALL ACR+++  E+ E  ++KL+ LE+   G YV+LSNIYA+   W+ V   R  M 
Sbjct: 487 AWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMC 546

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K+ G + IE++ +++ F + D    +  +IE +   +  R++  GYV +   V++
Sbjct: 547 EKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLH 606

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+++E K++ LC HSEK+AI FGL++  EG+PIRI KN+RVC DCH  +K IS +  R+I
Sbjct: 607 DVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKI 666

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD  RFHH ++G CSC  YW
Sbjct: 667 IMRDVKRFHHVQDGVCSCGDYW 688



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 134/253 (52%), Gaps = 3/253 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D     A+++   + G ++ A K+F+E+P ++ + W  M+ G+    +      LF  
Sbjct: 145 EGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSR 204

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCG 138
           M+    +L+   +  ++ AC ++ A  +G+  H + I++N +     L T+LVDMY KCG
Sbjct: 205 MRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCG 264

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A+  F  +  R+V  W+++I G A NG   +S+ +F  M    V PN VTF S++ 
Sbjct: 265 FLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVL 324

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +G +++GR     M R  G+E  +++Y   +D+Y + G +  A  V  ++P K + 
Sbjct: 325 ACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEK-NV 382

Query: 259 GAWGALLNACRMY 271
            +W  ++N   M+
Sbjct: 383 FSWSTMINGFGMH 395



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 6/174 (3%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++LS       L      +  I  N L  ++  G  +   Y + G+++ A   F  +   
Sbjct: 17  TLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFE 76

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           N+++W +++   + N      L+LF  M + G   +    V  ++ C  + L  +G + F
Sbjct: 77  NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF-QGAKLF 135

Query: 214 DSMRREYGIE--PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            S+  +  +E  P++     L+++Y   G L+EA  V  ++P+K ++  WG ++
Sbjct: 136 HSLAIKLRLEGDPYVA--PALMNVYTELGSLEEAHKVFEEVPLK-NSVIWGVMI 186


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/440 (48%), Positives = 289/440 (65%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV  QTA++S   KCG +  ARK+FD+M +R  + WN+M++GY Q G ++EA+ LF  M+
Sbjct: 145 DVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMK 204

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N  + VSVLSAC HLGA   G W H Y   N L + V LGT+L++MY++CGN++
Sbjct: 205 EIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVS 264

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA + F  MKERNV  WT++I G   NG G +++ELF  M++ G+ PN +TFV+VL  C 
Sbjct: 265 KAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACA 324

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EGR  F+SMR EY + P +EH+ CLVD+ GRAG LDEA + I ++  +P    W
Sbjct: 325 HAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIW 384

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            A+L AC+M+KN  +G   +   +  E  N   YV+LSNIYA +   D+V  VR  M  K
Sbjct: 385 TAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRK 444

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            +KK  G S I++DR+ + F  GD++H   NEI   L ++ R+ + AGYV  ++ VM+++
Sbjct: 445 CLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHEL 504

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEE+E  L  HSEK+AIAFGL+    G  IRIVKNLR+C DCH   K IS + NREIIV
Sbjct: 505 EEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIV 564

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD+ RFHHFK G CSC  YW
Sbjct: 565 RDKLRFHHFKNGSCSCLDYW 584



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 11/246 (4%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDV 85
           T +++     G +   R++F  +P  D   + +++   ++    S  +L+ +  M + +V
Sbjct: 48  TKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNV 107

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             +  +  SV+ +C  L AL  GR  H ++  N     V + TAL+  Y KCG +  A  
Sbjct: 108 APSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARK 167

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M++R+V TW S+I G   NG  ++++ LF  MK+ GV PN  TFVSVL  C  +G 
Sbjct: 168 VFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGA 227

Query: 206 VEEGREHFDSMRREYGIEPWLEHY----GCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              G         EY +   L+        L+++Y R G + +A +V + M  + +  AW
Sbjct: 228 FILG-----CWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKER-NVVAW 281

Query: 262 GALLNA 267
            A+++ 
Sbjct: 282 TAMISG 287



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 33/170 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY   G +   ++VFD + E +VV  TAMIS                             
Sbjct: 256 MYTRCGNVSKAREVFDSMKERNVVAWTAMIS----------------------------- 286

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNR 119
             GY   G   +A+ LFH M+ + +  N ++ V+VLSAC H G +++GR     + E  R
Sbjct: 287 --GYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYR 344

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV-YTWTSVIGGLAMN 168
           L   V     LVDM  + G +++A +F   + E      WT+++G   M+
Sbjct: 345 LVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMH 394


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/446 (45%), Positives = 293/446 (65%), Gaps = 3/446 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  E + V  T +I+  A+CGD   AR MF  +     +++NAM+    +  +  EAL L
Sbjct: 172 GAAEHEYVLPT-LINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVL 230

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ   +KL  V+++SVLSAC  LGAL+ GRW H Y+ + +L   V + TAL+DMY K
Sbjct: 231 FREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGK 290

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A+  F GM+ R+   W+ +I   A +  G +++ LF  MK+ G++P++VTF+ V
Sbjct: 291 CGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGV 350

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLV EG ++FDSM RE+G+ P ++HYGC+ DL  R+G+LD A + I+++P+KP
Sbjct: 351 LYACSHSGLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKP 409

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  W  LL+AC    + ++G+    +++EL+  + G YV+ SN+ A +  W+ +  VR+
Sbjct: 410 TAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRK 469

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  KGV K+PGCS IEVD  VHEFFAGD  HP+  +   M+  +  +LKLAGYV NT+ 
Sbjct: 470 LMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSH 529

Query: 377 VMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
           V + ++ EEEK  +L  HSEK+AI+FGL++   G  +R+VKNLRVC DCH + K++S VF
Sbjct: 530 VFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVF 589

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NR II+RD NRFHHF++G CSC  YW
Sbjct: 590 NRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 15/267 (5%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAW-NAMLAGYAQCG-------KSREALHLFHLMQIHDV 85
           AK   +  AR++FD +P    + W N +L GYA+C         + EA  +F  M    V
Sbjct: 79  AKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGV 138

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
             +  + VS+L AC    A ++GR AH V ++    +    L T L++MY++CG+   A 
Sbjct: 139 APDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPT-LINMYAECGDARAAR 197

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +    V ++ ++I     +    ++L LF  M+  G++   VT +SVL  C ++G
Sbjct: 198 TMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLG 257

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
            +E GR   + +R+   ++  ++    L+D+YG+ G L++A+ V   M  +    AW  +
Sbjct: 258 ALELGRWIHEYVRK-VQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQ-AWSVM 315

Query: 265 LNACRMYKNTEMGELASRKLVELETKN 291
           + A   Y N   G  A     E++ + 
Sbjct: 316 IVA---YANHSYGREAISLFEEMKKQG 339


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/461 (41%), Positives = 285/461 (61%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   ++VF  +   +VV   ++++   KCGD+  A K+F EM  R+ ++WN M
Sbjct: 430 MYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLM 489

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ G   +   L   M++   + + V+++S+L AC  L AL++G+  H    +  L
Sbjct: 490 IAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGL 549

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +    + T+L+ MYSKCG + +A   F  +  R+   W +++ G   +G G ++++LF  
Sbjct: 550 ESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKR 609

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +  V PNE+TF +V+  C   GLV+EGRE F  M+ ++ ++P  +HYGC+VDL GRAG
Sbjct: 610 MLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAG 669

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL EA + I +MP +P    W ALL AC+ + N ++ E A+  ++ LE  N   YV LSN
Sbjct: 670 RLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSN 729

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA++  WD    VR++M  KG+KK  G S IE+D  +H F A D  HP  + I   L  
Sbjct: 730 IYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEM 789

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++ +K AGY  +   V++D++E +KE  LC HSEK+AIA+GL+    G PIRI+KNLRV
Sbjct: 790 LTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRV 849

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  TK ISK+  REI+ RD NRFH+FK G CSC  +W
Sbjct: 850 CGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 172/312 (55%), Gaps = 14/312 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV   TA+I+  +KCG++ LA ++F +M ER+ ++W A++   AQ  K  EA  L+  
Sbjct: 211 ETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEK 270

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    +  N V+ VS+L++C    AL++GR  H +I    L+  V +  AL+ MY KC  
Sbjct: 271 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC 330

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS-----LELFSLMKQAGVRPNEVTFV 194
           +  A + F  M +R+V +W+++I G A +G  +K       +L   M++ GV PN+VTF+
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           S+L+ C V G +E+GR+    + +  G E        + ++Y + G + EA  V +KM  
Sbjct: 391 SILKACSVHGALEQGRQIHAEISK-VGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMEN 449

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLV--ELETKNHGAYVLLSNIYAESKNWDRVI 312
           K +  AW +LL    MY   + G+L S + V  E+ T+N  ++ L+   YA+S +  +V 
Sbjct: 450 K-NVVAWASLLT---MY--IKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVF 503

Query: 313 NVRQIMKAKGVK 324
            +   MK +G +
Sbjct: 504 ELLSSMKVEGFQ 515



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    ++I+  +K GDV    ++F  M  RD + W++M+A YA      +A   F  M+
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK 171

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +++ N ++ +S+L AC +   L++ R  H  ++ + ++  V + TAL+ MYSKCG ++
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  MKERNV +WT++I   A +    ++ EL+  M QAG+ PN VTFVS+L  C 
Sbjct: 232 LACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
               +  GR    S   E G+E  +     L+ +Y +   + +A +  ++M  K    +W
Sbjct: 292 TPEALNRGR-RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS-KRDVISW 349

Query: 262 GALL 265
            A++
Sbjct: 350 SAMI 353



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 133/297 (44%), Gaps = 61/297 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +  C+   ++ FD + + DV+  +AMI+  A+ G  D  ++  DE+           
Sbjct: 324 MYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQD--KESLDEV----------- 370

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                          L   M+   V  N+V+ +S+L AC+  GAL+QGR  H  I +   
Sbjct: 371 -------------FQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGF 417

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF----------WG--------------------- 149
           +   +L TA+ +MY+KCG++ +A   F          W                      
Sbjct: 418 ESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSE 477

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M  RNV +W  +I G A +G   K  EL S MK  G +P+ VT +S+L  C  +  +E G
Sbjct: 478 MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537

Query: 210 R-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +  H ++++   G+E        L+ +Y + G + EA  V +K+  +    AW A+L
Sbjct: 538 KLVHAEAVK--LGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTV-AWNAML 591



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 118/236 (50%), Gaps = 3/236 (1%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G+ +EA+ L  +++   + +N  +   ++  C  L   + G+  H  ++   L + + 
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LG +L++ YSK G++      F  M  R+V TW+S+I   A N    K+ + F  MK A 
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           + PN +TF+S+L+ C    ++E+ RE   ++ +  G+E  +     L+ +Y + G +  A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVATALITMYSKCGEISLA 233

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSN 300
            ++  KM  + +  +W A++ A   ++   E  EL  + L    + N   +V L N
Sbjct: 234 CEIFQKMKER-NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLN 288


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/446 (44%), Positives = 291/446 (65%), Gaps = 3/446 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H PD +  T+++S+ A CGD D ARK+FDEMP RD IAWN ++  Y +  ++++AL LF 
Sbjct: 156 HSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFD 215

Query: 79  LMQ--IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            M+   +  + ++V+ + +L ACT LGALD G     Y   +     + +  +L+ MY+K
Sbjct: 216 AMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRNSLITMYTK 275

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++KA   F    +++V TW+++I GLA NG G+ ++  F  M ++GV P+E TF  V
Sbjct: 276 CGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGV 335

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD-VINKMPMK 255
           L  C   GLV+EG + FD M  EY ++P + HYGC+VDL GRAG LD+A + V+  M + 
Sbjct: 336 LSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVA 395

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P A  W  LL ACR++ + ++GE     L+EL+ +  G YVLL N YA  ++W +V  VR
Sbjct: 396 PDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVR 455

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           ++MK KG++  PGC+ +E++ E+HEF A D +HPR  EI   L EI++ L++AGYV N +
Sbjct: 456 KLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINKHLRIAGYVPNVS 515

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
             ++D++ E KE  L  HSEK+AIAF L+   +  PIR+ KNLRVC DCH+ TK+ S V+
Sbjct: 516 SELHDLDSEGKECALAYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKVFSGVY 575

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           +R +IVRDR RFHHFKE +CSC  YW
Sbjct: 576 HRLVIVRDRTRFHHFKEFQCSCNDYW 601



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 9/182 (4%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  S+  VL  C    AL   R  H  +          L T+LV  Y+ CG+ + A   F
Sbjct: 127 NAFSLSIVLGHCR---ALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVF 183

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK--QAGVRPNEVTFVSVLRGCCVVGL 205
             M  R+   W  +I     N   + +L+LF  M+  + G  P++VT + +L+ C  +G 
Sbjct: 184 DEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGA 243

Query: 206 VEEGREHFD-SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           ++ G + ++ ++   YG E  L+    L+ +Y + G +D+A  V  + P K     W A+
Sbjct: 244 LDFGEKVWEYAVDHGYGGE--LKVRNSLITMYTKCGCVDKAYQVFCETPKKS-VVTWSAM 300

Query: 265 LN 266
           ++
Sbjct: 301 IS 302


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/442 (43%), Positives = 283/442 (64%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +   +T +++  AKCG ++ AR +FD M E+D + W+ M+ GYA     +E +  F  
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQ 303

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   ++K ++ S+V  LS+C  LGALD G W    I+R+     + +  AL+DMY+KCG 
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGA 363

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M +  + F  MKE+++    + I GLA NG  + S  +F   ++ G+ P+  TF+ +L G
Sbjct: 364 MARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCG 423

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+++G   F+++   Y ++  +EHYGC+VDL+GRAG LD+A  +I  MPM+P+A 
Sbjct: 424 CVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAI 483

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+ CR+ K+T++ E   ++L+ LE  N G YV LSNIY+ S  WD    VR +M 
Sbjct: 484 VWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMN 543

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+KK+PG S IE++  VHEF A D++HP  ++I   L ++   ++L G+V  T  V +
Sbjct: 544 RKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFF 603

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+EEKE  L  HSEK+A+AFGLIS   G  IR+VKNLRVC DCH+V K+ISK+  REI
Sbjct: 604 DVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREI 663

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFH F  G CSC  YW
Sbjct: 664 VVRDNNRFHCFTNGSCSCNDYW 685



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 3/235 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T+++S  +  G ++ A K+F+E+PER  + W A+ +GY   GK REA+ LF  M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMV 204

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ +   +V VLSAC H+G LD G W   ++E   ++    + T LV++Y+KCG M 
Sbjct: 205 EMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA   F  M E+++ TW+++I G A N   ++ +E F  M Q  ++P++ + V  L  C 
Sbjct: 265 KARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 202 VVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +G ++ G      + R E+    ++ +   L+D+Y + G +    +V  +M  K
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMAN--ALIDMYAKCGAMARGFEVFKEMKEK 377



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 7/214 (3%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +F      +   +N ++ G+       E L LF  ++ H + L+  +   VL ACT    
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
              G   H  + +      V   T+L+ +YS  G +N A   F  + ER+V TWT++  G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYG 221
               G   ++++LF  M + GVRP+    V VL  C  VG ++ G    +H + M  E  
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEM--EMQ 244

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
              ++     LV+LY + G++++A  V + M  K
Sbjct: 245 KNSFVR--TTLVNLYAKCGKMEKARSVFDSMGEK 276



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 91/208 (43%), Gaps = 10/208 (4%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +++SV S   HL      +  HV +  + L     L   L+         + +   F   
Sbjct: 18  TLISVASTFNHL------KQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHT 71

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
           +  N++ + ++I G   N    ++L+LF  +++ G+  +  TF  VL+ C      + G 
Sbjct: 72  QFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGI 131

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           +   S+  + G    +     L+ +Y  +GRL++A  V  ++P +     W AL +    
Sbjct: 132 D-LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERS-VVTWTALFSGYTT 189

Query: 271 Y-KNTEMGELASRKLVELETKNHGAYVL 297
             K+ E  +L  +K+VE+  +    +++
Sbjct: 190 AGKHREAIDLF-KKMVEMGVRPDSYFIV 216


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/439 (43%), Positives = 290/439 (66%), Gaps = 1/439 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   +A++   A+CG +D+A  +FD++  ++ ++WNA++AG+A+ G     L +F  MQ
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  +    +  SV SA   +GAL+QG+W H ++ ++  +++  +G  ++DMY+K G+M 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +++V TW S++   A  G G +++  F  M++ GV  N++TF+S+L  C 
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EG+++FD M +EY +EP ++HY  +VDL GRAG L++AL  I KMPMKP A  W
Sbjct: 379 HGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 437

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL +CRM+KN ++G+ A+  + EL+  + G  VLL NIYA +  WD    VR++MKA 
Sbjct: 438 GALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKAT 497

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK P CS +E++  VH F A D+THPR  EI     EIS +++ AGYV NT+ V+  +
Sbjct: 498 GVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHV 557

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +E+E++  L  HSEK+A+AF LI++  G  IRI+KN+R+C DCH   + ISKVF REI+V
Sbjct: 558 DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVV 617

Query: 442 RDRNRFHHFKEGKCSCKGY 460
           RD NRFHHF  G CSC  Y
Sbjct: 618 RDTNRFHHFSSGSCSCGDY 636



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 4/250 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V    ++I    KCG V  AR++FD MP RD  +W +++AGYAQ     EAL L   M  
Sbjct: 99  VFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLR 158

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
              K N  +  S+L A     +   G   H    +      V +G+AL+DMY++CG M+ 
Sbjct: 159 GRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDM 218

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A+  F  ++ +N  +W ++I G A  G GE +L +F+ M++ G      T+ SV      
Sbjct: 219 AIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAG 278

Query: 203 VGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           +G +E+G+  H   ++    +  ++ +   ++D+Y ++G + +A  V +++  K     W
Sbjct: 279 IGALEQGKWVHAHMIKSGERLSAFVGN--TILDMYAKSGSMIDARKVFDRVD-KKDVVTW 335

Query: 262 GALLNACRMY 271
            ++L A   Y
Sbjct: 336 NSMLTAFAQY 345



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+++AC    +LD  R  H ++  ++   +V L  +L+ +Y KCG +  A   F GM  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           ++ +WTS+I G A N   +++L L   M +   +PN  TF S+L+          G E  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG-EQI 187

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            ++  +Y     +     L+D+Y R GR+D A+ V +++  K +  +W AL+
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALI 238



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + DVV   +M++A                            
Sbjct: 310 MYAKSGSMIDARKVFDRVDKKDVVTWNSMLTA---------------------------- 341

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
              +AQ G  REA+  F  M+   V LN+++ +S+L+AC+H G + +G+     ++   L
Sbjct: 342 ---FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNL 398

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMN 168
           +  +     +VD+  + G +N A+ F + M  +     W +++G   M+
Sbjct: 399 EPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/441 (46%), Positives = 286/441 (64%), Gaps = 2/441 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM-- 80
           V   T ++   A+ G VD A  +F+ MP R+ ++W+AM+A YA+ GK+ EAL  F  M  
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMT 276

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  D   N V+MVSVL AC  L AL+QGR  H YI R  L   + + +ALV MY +CG +
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           +     F  M +R+V +W S+I    ++G G K++++F  M   G  P  VTFVSVL  C
Sbjct: 337 DVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLVEEG+  F+SM R++GI+P +EHY C+VDL GRA RLDEA  ++  M  +P    
Sbjct: 397 SHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WG+LL +CR++ N E+ E ASR+L  LE KN G YVLL++IYAE++ WD V  V+++++ 
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEH 516

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G++KLPG   +EV R+++ F + DE +P   +I   L +++  +K  GY+  T  V+Y+
Sbjct: 517 RGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +E EEKE  +  HSEK+A+AFGLI+  +G PIRI KNLR+C DCH  TK ISK   +EI+
Sbjct: 577 LETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEIL 636

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFH FK G CSC  YW
Sbjct: 637 VRDVNRFHRFKNGVCSCGDYW 657



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           + D   + D    T +I   +  G VD ARK+FD+  +R    WNA+       G   E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           L L+  M    V+ +  +   VL AC         L +G+  H ++ R      V + T 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVR 187
           LVDMY++ G ++ A   F GM  RNV +W+++I   A NG   ++L  F  M  +     
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           PN VT VSVL+ C  +  +E+GR  H   +RR  G++  L     LV +YGR G+LD   
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILRR--GLDSILPVISALVTMYGRCGKLDVGQ 340

Query: 247 DVINKMPMKPHAGAWGALLNA 267
            V ++M  +    +W +L+++
Sbjct: 341 RVFDRMHDR-DVVSWNSLISS 360



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 13/242 (5%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           I+ N ++    + GK ++AL +       +   ++ +   ++  C H  +L  G   H +
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLS----QESSPSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           I  N       L T L+ MYS  G+++ A   F   ++R +Y W ++   L + G GE+ 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
           L L+  M + GV  +  T+  VL+ C    C    + +G+E H    RR Y    ++   
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYI--M 220

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
             LVD+Y R G +D A  V N MP++ +  +W A++ AC          L + + +  ET
Sbjct: 221 TTLVDMYARFGCVDYASYVFNGMPVR-NVVSWSAMI-ACYAKNGKAFEALRTFREMMTET 278

Query: 290 KN 291
           K+
Sbjct: 279 KD 280


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/436 (44%), Positives = 288/436 (66%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++ A  K G++  A K+F+ +  +D IAW+AMLAGYAQ G++ EA  +FH +    +K
Sbjct: 441 TALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIK 500

Query: 87  LNEVSMVSVLSACTH-LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            NE +  S+++ACT    +++QG+  H Y  + RL   + + ++LV +Y+K GN+  A +
Sbjct: 501 PNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHE 560

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F   KER++ +W S+I G A +G  +K+LE+F  M++  +  + +TF+ V+  C   GL
Sbjct: 561 IFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGL 620

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V +G+ +F+ M  ++ I P +EHY C++DLY RAG L +A+D+IN MP  P A  W  +L
Sbjct: 621 VGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVL 680

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            A R+++N E+G+LA+ K++ LE ++  AYVLLSNIYA + NW   +NVR++M  + VKK
Sbjct: 681 AASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKK 740

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG S IEV  + + F AGD +HP  + I   L E++ RL+  GY  +TN V +DIE+E+
Sbjct: 741 EPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQ 800

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSE++AIAFGLI+    +P++IVKNLRVC DCH   K++S V  R I+VRD N
Sbjct: 801 KETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSN 860

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK G CSC  YW
Sbjct: 861 RFHHFKGGLCSCGDYW 876



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 133/248 (53%), Gaps = 16/248 (6%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCG 68
           +C+ +  G+     V  TA++ A  KC ++D A  +F  M   +  ++W AM++GY Q G
Sbjct: 327 HCKTLKSGLSTNQNVL-TALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNG 385

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            + +A++LF LM+   VK N  +  ++L+   H   + +    H  + +   + + ++GT
Sbjct: 386 DTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVFISE---IHAEVIKTNYEKSSSVGT 441

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL+D + K GN++ A+  F  ++ ++V  W++++ G A  G  E++ ++F  + + G++P
Sbjct: 442 ALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKP 501

Query: 189 NEVTFVSVLRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLD 243
           NE TF S++  C      VE+G++        Y I+  L +  C    LV LY + G ++
Sbjct: 502 NEFTFCSIINACTAPTASVEQGKQF-----HAYAIKLRLNNALCVSSSLVTLYAKRGNIE 556

Query: 244 EALDVINK 251
            A ++  +
Sbjct: 557 SAHEIFKR 564



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 145/323 (44%), Gaps = 30/323 (9%)

Query: 8   LGYCQKVFDGIHEPDVVCQ-------------TAMISACAKCGDVDLARKMFDEMPERDP 54
           L  C   F+G     V CQ              +++    K G+V   R++FDEM +RD 
Sbjct: 109 LSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDV 168

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           ++WN++L GY+    + +   LF LMQ+   + +  ++ +V++A  + GA+  G   H  
Sbjct: 169 VSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHAL 228

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           + +   +    +  +L+ M SK G +  A   F  M+ ++  +W S+I G  +NG   ++
Sbjct: 229 VVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEA 288

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCV---VGLVEEGREHFDSMRREYGIEPWLEHYGC 231
            E F+ M+ AG +P   TF SV++ C     +GLV     H  +++   G+         
Sbjct: 289 FETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRV--LHCKTLKS--GLSTNQNVLTA 344

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETK 290
           L+    +   +D+A  + + M       +W A+++      +T+    L S    E    
Sbjct: 345 LMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKP 404

Query: 291 NHGAY---------VLLSNIYAE 304
           NH  Y         V +S I+AE
Sbjct: 405 NHFTYSTILTVQHAVFISEIHAE 427



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 2/229 (0%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
            D   A+++FD+ P RD    N +L  Y++C +++EALHLF  +    +  +  +M  VL
Sbjct: 50  SDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVL 109

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
           S C        G   H    +  L   +++G +LVDMY+K GN+      F  M +R+V 
Sbjct: 110 SVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVV 169

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W S++ G + N   ++  ELF LM+  G RP+  T  +V+      G V  G +   ++
Sbjct: 170 SWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHAL 228

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             + G E        L+ +  ++G L +A  V + M  K    +W +++
Sbjct: 229 VVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSV-SWNSMI 276


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/472 (41%), Positives = 295/472 (62%), Gaps = 12/472 (2%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAM--ISACAKCGD----------VDLARKMFDEM 49
           YA+   +   ++ F  I + D+V   AM  ++   + GD          + +A  +F E+
Sbjct: 258 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSEL 317

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
             RD + WN++++  AQ G+S  AL L   M + +V++N V+MVS L AC+ L AL QG+
Sbjct: 318 STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGK 377

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
             H +I R  L     +  +L+DMY +CG++ K+   F  M +R++ +W  +I    M+G
Sbjct: 378 EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHG 437

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
            G  ++ LF   +  G++PN +TF ++L  C   GL+EEG ++F  M+ EY ++P +E Y
Sbjct: 438 FGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQY 497

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
            C+VDL  RAG+ +E L+ I KMP +P+A  WG+LL ACR++ N ++ E A+R L ELE 
Sbjct: 498 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEP 557

Query: 290 KNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHP 349
           ++ G YVL++NIY+ +  W+    +R +MK +GV K PGCS IEV R++H F  GD +HP
Sbjct: 558 QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHP 617

Query: 350 RYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEG 409
              +I   +  +   +K  GYV +TN V+ D++E+EKE +LC HSEK+A+AFGLIS   G
Sbjct: 618 LMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAG 677

Query: 410 VPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            P+RI+KNLRVC DCH  TK ISKV  R+II+RD  RFHHF +G CSC  YW
Sbjct: 678 TPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 152/353 (43%), Gaps = 42/353 (11%)

Query: 15  FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74
           F G    +V CQT         G V+ AR+MFD+M ER+  +W A++  Y   G   E +
Sbjct: 46  FLGSRLLEVYCQT---------GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETI 96

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
            LF+LM    V+ +      V  AC+ L     G+  + Y+     +    +  +++DM+
Sbjct: 97  KLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMF 156

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
            KCG M+ A  FF  ++ ++V+ W  ++ G    G  +K+L +F  M   GV+PN +T  
Sbjct: 157 IKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIA 216

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           S +  C  + L+  GRE      +   ++  L     LVD Y +   ++ A      M  
Sbjct: 217 SAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG-MIK 275

Query: 255 KPHAGAWGALLNACRMYKNTEMGE------------LASRKLVELETKNHGAYVLLSNIY 302
           +    +W A+L        T+ G+            +A     EL T++    V+ ++I 
Sbjct: 276 QTDLVSWNAMLAVTGF---TQYGDGKAALEFFQRMHIACSVFSELSTRD---VVVWNSII 329

Query: 303 AESKNWDRVINVRQIMKAKG-----------VKKLPGCSVIEVDR---EVHEF 341
           +      R +N   +++              V  LP CS +   R   E+H+F
Sbjct: 330 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQF 382



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 1/162 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L  C  L  L  G   H  +  N + +   LG+ L+++Y + G +  A   F  M ER
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           NV++WT+++      G  E++++LF LM   GVRP+   F  V + C  +     G++ +
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 134

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           D M    G E      G ++D++ + GR+D A     ++  K
Sbjct: 135 DYM-LSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/452 (43%), Positives = 292/452 (64%), Gaps = 12/452 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   Q A++   ++ G +D+A+++F +M +RD + WN ++ GY    +  +AL + H MQ
Sbjct: 435 DRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQ 494

Query: 82  IHD-----------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           I +           +K N ++++++L +C  L AL +G+  H Y  +N L   V +G+AL
Sbjct: 495 ILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 554

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           VDMY+KCG +  +   F  +  RNV TW  ++    M+G  + ++++  +M   GV+PNE
Sbjct: 555 VDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNE 614

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VTF+SV   C   G+V EG + F +M+++YG+EP  +HY C+VDL GRAGR+ EA  +IN
Sbjct: 615 VTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLIN 674

Query: 251 KMPMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            +P     AGAW +LL ACR++ N E+GE+A++ L++LE      YVLL+NIY+ +  W 
Sbjct: 675 LIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWY 734

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
           +   VR+ MKA+GV+K PGCS IE   EVH+F AGD +HP+  ++   L  +  R++  G
Sbjct: 735 KATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEG 794

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           Y+ +T+ V++++EE+EKE  LC HSEK+AIAFG+++   G  IR+ KNLRVC DCH  TK
Sbjct: 795 YIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 854

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ISKV +REII+RD  RFHHFK G CSC  YW
Sbjct: 855 FISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 128/262 (48%), Gaps = 16/262 (6%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +A++     C  V    ++FD M +R    WNAM+ GYAQ     EAL LF  M+     
Sbjct: 338 SALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGL 397

Query: 87  L-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           L N  +M  V+ AC   GA  +    H ++ +  L     +  AL+DMYS+ G ++ A  
Sbjct: 398 LANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKR 457

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-----------QAGVRPNEVTFV 194
            F  M++R++ TW ++I G   +   E +L +   M+           +  ++PN +T +
Sbjct: 458 IFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLM 517

Query: 195 SVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++L  C  +  + +G+E H  +++     +  +     LVD+Y + G L  +  V +++P
Sbjct: 518 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRKVFDQIP 575

Query: 254 MKPHAGAWGALLNACRMYKNTE 275
           ++ +   W  ++ A  M+ N++
Sbjct: 576 IR-NVITWNVIVMAYGMHGNSQ 596



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 3/228 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +++   K G +  ++ +      RD + WN +L+   Q  +  EAL     M +  V+
Sbjct: 236 NTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVE 295

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMD 145
            +  ++ SVL AC+HL  L  G+  H Y  +N  L     +G+ALVDMY  C  +     
Sbjct: 296 PDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCR 355

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVG 204
            F GM +R +  W ++I G A N   E++L LF  M++ AG+  N  T   V+  C   G
Sbjct: 356 VFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSG 415

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
              + +E       + G++        L+D+Y R G++D A  +  KM
Sbjct: 416 AFSK-KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKM 462



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 8/269 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V     +++   KCGD     K+FD + ER+ ++WN++++      K   AL  F  M  
Sbjct: 129 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 188

Query: 83  HDVKLNEVSMVSVLSACTHLG---ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            DV+ +  ++VSV  AC++      L  G+  H Y  R     +  + T LV MY K G 
Sbjct: 189 EDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINT-LVAMYGKMGK 247

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  +       + R++ TW +V+  L  N    ++LE    M   GV P+  T  SVL  
Sbjct: 248 LASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPA 307

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  + ++  G+E      +   ++        LVD+Y    ++     V + M      G
Sbjct: 308 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGM-FDRKIG 366

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELE 288
            W A++     Y   E  E A    +E+E
Sbjct: 367 LWNAMITG---YAQNEYDEEALLLFIEME 392



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 6/193 (3%)

Query: 54  PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
           P  W  +L    +    REA+  +  M +  +K +  +  ++L A   L  +D G+  H 
Sbjct: 58  PEWWIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHA 117

Query: 114 YIERNRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
           ++ +    + +VT+   LV++Y KCG+       F  + ERN  +W S+I  L      E
Sbjct: 118 HVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWE 177

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE---EGREHFDSMRREYGIEPWLEHY 229
            +LE F  M    V P+  T VSV   C    + E    G++      R+  +  ++   
Sbjct: 178 MALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFI--I 235

Query: 230 GCLVDLYGRAGRL 242
             LV +YG+ G+L
Sbjct: 236 NTLVAMYGKMGKL 248



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 36/168 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GCL   +KV                               FD++P R+ I WN +
Sbjct: 557 MYAKCGCLQMSRKV-------------------------------FDQIPIRNVITWNVI 585

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           +  Y   G S++A+ +  +M +  VK NEV+ +SV +AC+H G +++G      ++++  
Sbjct: 586 VMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYG 645

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN---VYTWTSVIGG 164
           ++ +      +VD+  + G + +A      +  RN      W+S++G 
Sbjct: 646 VEPSSDHYACVVDLLGRAGRVKEAYQLI-NLIPRNFDKAGAWSSLLGA 692


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/460 (43%), Positives = 292/460 (63%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+   +   +++F+ +  P++     MIS   + GD+  AR +FD MP+RD ++W A++
Sbjct: 291 YAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAII 350

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGYAQ G   EA+++   M+     LN  +    LSAC  + AL+ G+  H  + R   +
Sbjct: 351 AGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYE 410

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
               +G ALV MY KCG +++A D F G++ +++ +W +++ G A +G G ++L +F  M
Sbjct: 411 KGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESM 470

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             AGV+P+E+T V VL  C   GL + G E+F SM ++YGI P  +HY C++DL GRAG 
Sbjct: 471 ITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGC 530

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA ++I  MP +P A  WGALL A R++ N E+GE A+  + ++E  N G YVLLSN+
Sbjct: 531 LEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNL 590

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA S  W  V  +R  M+  GV+K PG S +EV  ++H F  GD  HP    I   L E+
Sbjct: 591 YAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEEL 650

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
             ++K  GYV++T  V++D+EEEEK+  L  HSEK+A+AFG++++  G PIR++KNLRVC
Sbjct: 651 DLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVC 710

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH+  K ISK+  R IIVRD +R+HHF EG CSC+ YW
Sbjct: 711 EDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 21/275 (7%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +FD + E DVV   AM+S   + G VD AR +FD MP ++ I+WN +LA Y + G+  EA
Sbjct: 117 LFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEA 176

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             LF      D +L  +S   ++        L   R     I    L   ++  T ++  
Sbjct: 177 RRLFE--SKSDWEL--ISCNCLMGGYVKRNMLGDARQLFDQIPVRDL---ISWNT-MISG 228

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y++ G++++A   F     R+V+TWT+++     +G  +++  +F  M Q      E+++
Sbjct: 229 YAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK----REMSY 284

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
             ++ G      ++ GRE F+ M       P +  +  ++  Y + G L +A ++ + MP
Sbjct: 285 NVMIAGYAQYKRMDMGRELFEEMPF-----PNIGSWNIMISGYCQNGDLAQARNLFDMMP 339

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
            +    +W A++     Y    + E A   LVE++
Sbjct: 340 QRDSV-SWAAIIAG---YAQNGLYEEAMNMLVEMK 370



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 155/338 (45%), Gaps = 48/338 (14%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VFD +   + V   AMIS   +     LAR +FD+MP +D  +WN ML GYA+  + R+A
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA 114

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-------------WAHV---YIER 117
             LF  M   DV    VS  ++LS     G +D+ R             W  +   Y+  
Sbjct: 115 RMLFDSMPEKDV----VSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRS 170

Query: 118 NRLKMTVTLGTA-----------LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
            RL+    L  +           L+  Y K   +  A   F  +  R++ +W ++I G A
Sbjct: 171 GRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYA 230

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            +G   ++  LF   +++ VR +  T+ +++      G+++E R  FD M ++  +    
Sbjct: 231 QDGDLSQARRLF---EESPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS--- 283

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA-SRKLV 285
             Y  ++  Y +  R+D   ++  +MP  P+ G+W  +++        + G+LA +R L 
Sbjct: 284 --YNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGY-----CQNGDLAQARNLF 335

Query: 286 E-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           + +  ++  ++  +   YA++  ++  +N+   MK  G
Sbjct: 336 DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 290/446 (65%), Gaps = 3/446 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  D +  T++++  A  GD D ARK+F EMP RD +AWN +++  A+  ++++AL LF 
Sbjct: 150 HLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFE 209

Query: 79  LMQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            M+  D   + ++V+ + +L ACT LGALD G     Y E +     + +  +L+ MYS+
Sbjct: 210 EMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSR 269

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++KA   F G  +++V TW+++I GLA NG G+ ++  F  M ++ V P+E TF  V
Sbjct: 270 CGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGV 329

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMK 255
           L  C   GLV+EG   FD MR EYG++P + HYGC+VDL GRAG LDEA +++ N+M + 
Sbjct: 330 LSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVA 389

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P A  W  LL ACR++ + ++GE     L+EL+ +  G YVLL N YA    W +V  VR
Sbjct: 390 PDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVR 449

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           ++M+ KG++  PGC+ +E + EV+EF A D+ HPR  EI   L EI+++L++AGYV N +
Sbjct: 450 KLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNVS 509

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
             ++D++ E KE  L  HSEK+AIAF L+   +  PIR+ KNLRVC DCH+ TK+ S ++
Sbjct: 510 SELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGIY 569

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NR +IVRDR RFHHF+ GKCSC  YW
Sbjct: 570 NRLVIVRDRTRFHHFQGGKCSCNDYW 595



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
           AL   R  H  +          L T+L+  Y+  G+ + A   F  M  R+   W  +I 
Sbjct: 134 ALAHARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLIS 193

Query: 164 GLAMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
             A N   + +L+LF  M  + +G  P++VT + +L+ C  +G ++ G E   +   E+G
Sbjct: 194 CCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFG-EQVWAYAEEHG 252

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
               L+    L+ +Y R G +D+A  V    P K     W A+++
Sbjct: 253 YGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKS-VVTWSAMIS 296



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 34/172 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  GC+    +VF G  +  VV  +AMIS  A  G  D A   F+EM           
Sbjct: 266 MYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRS-------- 317

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                                  DV  +E +   VLSAC+H G +D+G R+  +      
Sbjct: 318 -----------------------DVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYG 354

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWG-MK-ERNVYTWTSVIGGLAMNG 169
           LK  V     +VD+  + G +++A +     MK   +   W +++G   ++G
Sbjct: 355 LKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHG 406


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/465 (41%), Positives = 301/465 (64%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +   +   +KVFD + E DV+  T +I+A A+ G+++ A ++F+ +P +D +AW AM
Sbjct: 193 MYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAM 252

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G+AQ  K +EAL  F  M+   ++ +EV++   +SAC  LGA      A    +++  
Sbjct: 253 VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGY 312

Query: 121 KMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             +  V +G+AL+DMYSKCGN+ +A++ F  M  +NV+T++S+I GLA +G  +++L LF
Sbjct: 313 SPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLF 372

Query: 179 SLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
             M  Q  ++PN VTFV  L  C   GLV++GR+ FDSM + +G++P  +HY C+VDL G
Sbjct: 373 HYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLG 432

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R GRL EAL++I  M ++PH G WGALL ACR++ N E+ E+A+  L ELE    G Y+L
Sbjct: 433 RTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYIL 492

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS-VIEVDREVHEFFAGDETHPRYNEIEV 356
           LSN+YA + +W  V+ VR+++K KG+KK P  S V++ + ++H+FF G+  HP  N+I+ 
Sbjct: 493 LSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQD 552

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L E+  RL + GY  + + V YD+ +  K   L +H+EK+A+AF L++      I I+K
Sbjct: 553 KLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMK 612

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH   ++ S+V  + II+RD  RFHHF+ G CSC  +W
Sbjct: 613 NLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 36/248 (14%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           AR++ + +  R+P  W A++ GYA  GK  EA+ ++  M+  ++     +  ++L AC  
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC------------------------ 137
           +  L+ GR  H    R R    V +G  ++DMY KC                        
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221

Query: 138 -------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
                  GNM  A + F  +  +++  WT+++ G A N   +++LE F  M+++G+R +E
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALD 247
           VT    +  C  +G   +  +    + ++ G  P  +H      L+D+Y + G ++EA++
Sbjct: 282 VTVAGYISACAQLG-ASKYADRAVQIAQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAVN 339

Query: 248 VINKMPMK 255
           V   M  K
Sbjct: 340 VFMSMNNK 347


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/460 (45%), Positives = 290/460 (63%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y E G L    K+F+      VV  TAMI+   K G + LA ++F++MPE++ + WNAM+
Sbjct: 110 YVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMI 169

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           AGY +  ++ + + LF  M    ++ N  ++ S L  C+ L AL  GR  H  + ++ L 
Sbjct: 170 AGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLC 229

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
              T GT+L+ MY KCG +      F  +  R+V TW ++I G A +G G+K+L LF  M
Sbjct: 230 DDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEM 289

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
            + G++P+ +TFV+VL  C   G  + G ++F SM ++YG+    +HY C+VDL GRAG+
Sbjct: 290 IEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGK 349

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L EA+D+I KMP KPHA  +G LL ACR++KNTEM E AS+KL+ L+  +   YV L+N+
Sbjct: 350 LVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANV 409

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           YA +K WD V  VR+ MK+  V K PG S IEV    H+F +GD+ HP    I   L E+
Sbjct: 410 YAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKEL 469

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
            +++KLAGYV +    ++D+ EE+KE  L  HSEK+AIA+GLI L  G PIR+ KNLRVC
Sbjct: 470 EKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVC 529

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH   K IS++  REIIVRD  RFHHFK+G CSC  YW
Sbjct: 530 GDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/463 (44%), Positives = 290/463 (62%), Gaps = 7/463 (1%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG L    K+F      D +  T ++   + C +   A K+FDE+P+RD ++WN + + Y
Sbjct: 130 LGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCY 189

Query: 65  AQCGKSREALHLFHLMQIHDV----KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
            +  ++R+ L LF  M+ +DV    K + V+ +  L AC +LGALD G+  H +I+ N L
Sbjct: 190 LRNKRTRDVLVLFDKMK-NDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL 248

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L   LV MYS+CG+M+KA   F+GM+ERNV +WT++I GLAMNG G++++E F+ 
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNE 308

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR-EYGIEPWLEHYGCLVDLYGRA 239
           M + G+ P E T   +L  C   GLV EG   FD MR  E+ I+P L HYGC+VDL GRA
Sbjct: 309 MLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRA 368

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
             LD+A  +I  M MKP +  W  LL ACR++ + E+GE     L+EL+ +  G YVLL 
Sbjct: 369 RLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLL 428

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N Y+    W++V  +R +MK K +   PGCS IE+   VHEF   D +HPR  EI  ML 
Sbjct: 429 NTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLA 488

Query: 360 EISRRLKLAGYVANTNPVMYDIE-EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI+++LK+AGYVA     ++++E EEEK   L  HSEK+AIAFG++    G  IR+ KNL
Sbjct: 489 EINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNL 548

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R C DCH+  K +S V++R +IVRDR+RFHHFK G CSC  +W
Sbjct: 549 RTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 6/237 (2%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVL 96
           D++ + ++F +         N M+  ++      E   LF  L +   +  N +S    L
Sbjct: 61  DINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFAL 120

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
             C   G L  G   H  I  +       L T L+D+YS C N   A   F  + +R+  
Sbjct: 121 KCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTV 180

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQ---AGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +W  +      N      L LF  MK      V+P+ VT +  L+ C  +G ++ G++  
Sbjct: 181 SWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVH 240

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           D +  E G+   L     LV +Y R G +D+A  V   M  + +  +W AL++   M
Sbjct: 241 DFI-DENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRER-NVVSWTALISGLAM 295


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/466 (44%), Positives = 295/466 (63%), Gaps = 7/466 (1%)

Query: 2   YAELG----CLGYCQKVFDGIHEPDVVCQTAMISACA--KCGDVDLARKMFDEMPERDPI 55
           YA+ G     L  C+++ D   +PD     +++ A     C +V   + MF ++ E+  I
Sbjct: 213 YAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLI 272

Query: 56  AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           +WN M+A Y       EA+ L+  MQ+H V+ + VS+ SVL AC  L A   GR  H Y+
Sbjct: 273 SWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYV 332

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           ER +L+  + L  AL+DMY+KCG + +A   F  M  R+V +WTS+I    M+G G+ ++
Sbjct: 333 ERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAV 392

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LF  M+ +G  P+ + FVSVL  C   GLV+EGR  F+ M  EYGI P +EHY C+VDL
Sbjct: 393 ALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDL 451

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
            GRAG++DEA  +  +MPM+P+   WG+LL+ACR+Y +  +  LA+  L +L  +  G Y
Sbjct: 452 LGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYY 511

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
           VLLSNIYA++  W  V  VR IM +KG+KK+PG S +E++  V+ F AGD++H +  EI 
Sbjct: 512 VLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIY 571

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
             LG +  R+K  GY+  T+  ++D+EEE+KE  L  HSEK+AI F +++ K G  IRI 
Sbjct: 572 KALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRIT 631

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KN+RVC DCH  TK+ISK+  REII+RD +RFHHF++G CSC  YW
Sbjct: 632 KNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 10/253 (3%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P+      ++ A A CG+    R +FDE+ +++ + +N M+  Y   G  ++AL +F  M
Sbjct: 69  PNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTM 128

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                  +  +   VL AC+  G L  G   H  + +  L M + +G  LV MY KC  +
Sbjct: 129 ANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWL 188

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A      M  R++ +W S++ G A NG    +L+L   M+   ++P+  T  S+L   
Sbjct: 189 DAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAV 248

Query: 201 CVVGL--VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MK 255
                  V   ++ F  ++     E  L  +  ++ +Y      +EA+D+  +M    ++
Sbjct: 249 TNTSCDNVLYVKDMFVKLK-----EKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVE 303

Query: 256 PHAGAWGALLNAC 268
           P A +  ++L AC
Sbjct: 304 PDAVSISSVLPAC 316



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 117/286 (40%), Gaps = 52/286 (18%)

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
           + + I++N L    +LG  L+  Y+ CG        F  + ++NV  +  +I     NG 
Sbjct: 59  SKILIDQN-LHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGL 117

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
            + +L +F  M   G  P+  T+  VL+ C V G +  G +   ++ +  G++  L    
Sbjct: 118 YQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVK-LGLDMNLYIGN 176

Query: 231 CLVDLYGRAGRLDEALDVINKMP----------------------------------MKP 256
            LV +YG+   LD A  V+++MP                                  +KP
Sbjct: 177 GLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKP 236

Query: 257 HAGAWGALLNACRMYKNTEMGELASRK--LVELETKNHGAYVLLSNIYAESKNWDRVINV 314
            AG  G+LL A     NT    +   K   V+L+ K+  ++ ++  +Y  +   +  +++
Sbjct: 237 DAGTMGSLLPAV---TNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDL 293

Query: 315 RQIMKAKGVKK--------LPGC---SVIEVDREVHEFFAGDETHP 349
              M+  GV+         LP C   S   + R +HE+    +  P
Sbjct: 294 YLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRP 339


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 289/445 (64%), Gaps = 2/445 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G HE DV   +A++   A+CG +D+A  +FD++  ++ ++WNA+++G+A+ G    AL  
Sbjct: 182 GWHE-DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMT 240

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M  +  +    +  SV S+   LGAL+QG+W H ++ ++R K+T  +G  L+DMY+K
Sbjct: 241 FAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAK 300

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G+M  A   F  +  +++ TW S++   A  G G++++  F  M+++GV  N++TF+ +
Sbjct: 301 SGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCI 360

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLV+EG+ +F+ M +EY +EP ++HY  +V L GRAG L+ AL  I KMPM+P
Sbjct: 361 LTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEP 419

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  WGALL ACRM+KN ++G+ A+  + EL+  + G  VLL NIYA +  WD    VR 
Sbjct: 420 TAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRM 479

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +MK  GVKK P CS +E++  VH F A D+THP+  EI  M GEIS++++  GYV + + 
Sbjct: 480 MMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDY 539

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+  ++++EKE  L  HSEK+A+AF LI +  G  IRI+KN+R+C DCH   K ISKVF 
Sbjct: 540 VLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFG 599

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           REI+VRD NRFHHF  G CSC  YW
Sbjct: 600 REIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     ++I    KC  V  AR +FD+M  +D ++W +++AGYAQ     EA+ L   M 
Sbjct: 85  DAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGML 144

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K N  +  S+L A         GR  H    +      V +G+AL+DMY++CG M+
Sbjct: 145 KGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMD 204

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  +N  +W ++I G A  G GE +L  F+ M + G      T+ SV     
Sbjct: 205 MATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIA 264

Query: 202 VVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +G +E+G+  H   ++    +  ++ +   L+D+Y ++G + +A  V +++  K     
Sbjct: 265 RLGALEQGKWVHAHVIKSRQKLTAFVGN--TLLDMYAKSGSMIDARKVFDRVDNKDLV-T 321

Query: 261 WGALLNACRMY 271
           W ++L A   Y
Sbjct: 322 WNSMLTAFAQY 332



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 2/173 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S ++AC     L+  R  H ++  +R      L  +L+ MY KC ++  A + F  M+ +
Sbjct: 56  SFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRK 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           ++ +WTS+I G A N    +++ L   M +   +PN  TF S+L+          GR+  
Sbjct: 116 DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ-I 174

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            ++  + G    +     L+D+Y R G++D A  V +K+  K +  +W AL++
Sbjct: 175 HALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK-NGVSWNALIS 226



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD +   D+V   +M++A                            
Sbjct: 297 MYAKSGSMIDARKVFDRVDNKDLVTWNSMLTA---------------------------- 328

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
              +AQ G  +EA+  F  M+   V LN+++ + +L+AC+H G + +G+     ++   L
Sbjct: 329 ---FAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDL 385

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           +  +     +V +  + G +N A+ F + M  E     W +++    M+
Sbjct: 386 EPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/432 (46%), Positives = 287/432 (66%), Gaps = 4/432 (0%)

Query: 34  AKCGDVDLARKMFDEMPE----RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
            KCG++  AR++F+EMPE    +D + W AM+ G+ +  +   AL  F  MQ  +V+ NE
Sbjct: 176 GKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNE 235

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
            ++V VLSAC+ LGAL+ GRW H Y+ +  +++ + +G AL++MYS+CG++++A   F  
Sbjct: 236 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 295

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           MK+R+V T+ ++I GL+MNG   +++ELF +M    +RP  VTFV VL  C   GLV+ G
Sbjct: 296 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 355

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
            + F SM R+YG+EP +EHYGC+VDL GR GRL+EA D+I  M M P     G LL+AC+
Sbjct: 356 FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 415

Query: 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGC 329
           M+KN E+GE  ++ L +    + G YVLLS++YA S  W     VR  MK  G++K PGC
Sbjct: 416 MHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGC 475

Query: 330 SVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDT 389
           S IEV+ E+HEF  GD  HPR   I   L E++R L+L GY      V+ DIE+ EKE  
Sbjct: 476 SSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWA 535

Query: 390 LCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHH 449
           L  HSE++AI +GLIS +    IR++KNLRVC+DCH   K+I+K+  R+++VRDRNRFH+
Sbjct: 536 LAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHY 595

Query: 450 FKEGKCSCKGYW 461
           F+ G CSC  YW
Sbjct: 596 FENGACSCGDYW 607



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 8/248 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q + +G H  D      ++ +C+KC  +D A ++F      +   + A++ G+   G 
Sbjct: 52  HAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 70  SREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
             +A+ L+  M +HD  L +   M S+L AC    AL +GR  H    +  L     +  
Sbjct: 111 YFDAIQLYSRM-LHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRL 169

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKE----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            ++++Y KCG +  A   F  M E    ++   WT++I G   N    ++LE F  M+  
Sbjct: 170 RIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGE 229

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            VRPNE T V VL  C  +G +E GR     MR+ + IE  L     L+++Y R G +DE
Sbjct: 230 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDE 288

Query: 245 ALDVINKM 252
           A  V ++M
Sbjct: 289 AQTVFDEM 296



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++    A+I+  ++CG +D A+ +FDEM +RD I +N M++G +  GKSR+A+ LF +
Sbjct: 267 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 326

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M    ++   V+ V VL+AC+H G +D G +  H       ++  +     +VD+  + G
Sbjct: 327 MIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVG 386

Query: 139 NMNKAMDFFWGMK 151
            + +A D    MK
Sbjct: 387 RLEEAYDLIRTMK 399



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 9/193 (4%)

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L++  ++S+L    H+   +Q    H  + RN       +   L+   SKC  ++ A   
Sbjct: 30  LDQKQIISLLQRSKHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 86

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F      NVY +T++I G   +G    +++L+S M    + P+     S+L+ C     +
Sbjct: 87  FQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLAL 146

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGA 263
            EGRE   S   + G+         +++LYG+ G L +A  V  +MP   +      W A
Sbjct: 147 REGRE-VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTA 205

Query: 264 LLNACRMYKNTEM 276
           +++     +N EM
Sbjct: 206 MIDG--FVRNEEM 216


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/443 (45%), Positives = 282/443 (63%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +++  TA++   +KCG +  A  +F+ M +R+ I W AML G AQ G + +AL LF  
Sbjct: 363 ESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQ 422

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +  N V+ VS++ +C HLG+L +GR  H ++ R      +   TALVDMY+KCG 
Sbjct: 423 MQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGK 482

Query: 140 MNKAMDFF-WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +N A   F  G   ++V  W S+I G  M+G G +++ ++  M + G++PN+ TF+S+L 
Sbjct: 483 INLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLS 542

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C    LVE+G   F+SM R++ I P  +HY CLVDL  RAGR +EA  +I KMP +P  
Sbjct: 543 ACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGT 602

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
               ALL+ CR +KN  +G   S KL+ L+  N G Y++LSNIYAE++ WD+V  +R +M
Sbjct: 603 AVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLM 662

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G+KK PG S++E    VH FFAGD +HP + EI   L  +   ++ +GYV +T+ V+
Sbjct: 663 RNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVL 722

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D++EE K   L  HSE++AIAFGL++   G  IRI KNLRVC DCH VTK ISK+  RE
Sbjct: 723 RDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKRE 782

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHF  G+CSC  YW
Sbjct: 783 IIVRDANRFHHFSNGECSCGDYW 805



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 141/250 (56%), Gaps = 2/250 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  T+ +   +K GD++ AR +F +MP R+ ++WNAM++G  + G   E+  LFH + 
Sbjct: 265 DILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLV 324

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 +  ++VS+L  C+   +L  G+  H    R+  +  + L TA+VD+YSKCG++ 
Sbjct: 325 RSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLK 383

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  MK+RNV TWT+++ GLA NG  E +L LF+ M++ G+  N VTFVS++  C 
Sbjct: 384 QATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCA 443

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G ++ GR     + R  G    + +   LVD+Y + G+++ A  + +   +      W
Sbjct: 444 HLGSLKRGRSIHGHLFR-LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLW 502

Query: 262 GALLNACRMY 271
            +++    M+
Sbjct: 503 NSMITGYGMH 512



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 3/246 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +    ++MIS   K G +  A+++FD MP +D + WN+++ GY Q G    A  LF  
Sbjct: 162 EKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFE 221

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    +K + ++M S++ AC  +G L  G+  H Y+    L   + + T+ VDMYSK G+
Sbjct: 222 MHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGD 281

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F+ M  RN+ +W ++I G   NG   +S +LF  + ++    +  T VS+L+G
Sbjct: 282 IESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQG 341

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C     +  G+       R +  E  L     +VDLY + G L +A  V N+M  + +  
Sbjct: 342 CSQTASLATGKILHGCAIRSF--ESNLILSTAIVDLYSKCGSLKQATFVFNRMKDR-NVI 398

Query: 260 AWGALL 265
            W A+L
Sbjct: 399 TWTAML 404



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 130/264 (49%), Gaps = 18/264 (6%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    T ++ A +    ++ AR +FD+  +   +  NAML GY Q G+ RE L LF LM+
Sbjct: 63  DQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMR 122

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-------IERNRLKMTVTLGTALVDMY 134
             +++++  S    L AC    +LD      +        +E+NR      +G++++   
Sbjct: 123 SRNLEVDSCSCTFALKACA--SSLDYEMGMEIISSAVEKGMEKNRF-----VGSSMISFL 175

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
            K G + +A   F GM  ++V  W S+IGG    G  + + +LF  M  +G++P+ +T  
Sbjct: 176 VKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMT 235

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           S+++ C  +G ++ G+          G+   +      VD+Y + G ++ A  V  KMP 
Sbjct: 236 SLIQACGGIGNLKLGK-CMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPT 294

Query: 255 KPHAGAWGALLNACRMYKNTEMGE 278
           + +  +W A+++ C   +N  +GE
Sbjct: 295 R-NLVSWNAMISGC--VRNGLVGE 315


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/449 (43%), Positives = 292/449 (65%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++F+ +   ++     MI+   + G +  ARK+FD MP+RD ++W A+++GYAQ G   E
Sbjct: 315 ELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEE 374

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL++F  M+      N  +    LS C  + AL+ G+  H  + +   +    +G AL+ 
Sbjct: 375 ALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLG 434

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG+ ++A D F G++E++V +W ++I G A +G G ++L LF  MK+AGV+P+E+T
Sbjct: 435 MYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            V VL  C   GL++ G E+F SM R+Y ++P  +HY C++DL GRAGRL+EA +++  M
Sbjct: 495 MVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNM 554

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P  P A +WGALL A R++ NTE+GE A+  + ++E +N G YVLLSN+YA S  W  V 
Sbjct: 555 PFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVG 614

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            +R  M+  GV+K+ G S +EV  ++H F  GD  HP  + I   L E+  +++  GYV+
Sbjct: 615 KMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVS 674

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           +T  V++D+EEEEKE  L  HSEK+A+AFG++++  G PIR++KNLRVC DCH+  K IS
Sbjct: 675 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHIS 734

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+  R II+RD +RFHHF EG CSC  YW
Sbjct: 735 KIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 11/249 (4%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +   LG  +++FD +   DV+    MIS  A+ GD+  A+++F+E P RD   W AM+
Sbjct: 211 YVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMV 270

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL-DQGRWAHVYIERNRL 120
           +GY Q G   EA   F  M +     NE+S  ++L+       +   G        RN  
Sbjct: 271 SGYVQNGMVDEARKYFDEMPVK----NEISYNAMLAGYVQYKKMVIAGELFEAMPCRN-- 324

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              ++    ++  Y + G + +A   F  M +R+  +W ++I G A NG  E++L +F  
Sbjct: 325 ---ISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVE 381

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK+ G   N  TF   L  C  +  +E G++    + +  G E        L+ +Y + G
Sbjct: 382 MKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKA-GFETGCFVGNALLGMYFKCG 440

Query: 241 RLDEALDVI 249
             DEA DV 
Sbjct: 441 STDEANDVF 449



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 18/260 (6%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           LG   K+FD + + DVV   AM+S  A+ G VD AR++F++MP R+ I+WN +LA Y   
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHN 183

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+ +EA  LF      ++    +S   ++        L   R      +R  ++  ++  
Sbjct: 184 GRLKEARRLFESQSNWEL----ISWNCLMGGYVKRNMLGDAR---QLFDRMPVRDVISWN 236

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T ++  Y++ G++++A   F     R+V+TWT+++ G   NG  +++ + F  M      
Sbjct: 237 T-MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPV---- 291

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            NE+++ ++L G      +    E F++M     I  W      ++  YG+ G + +A  
Sbjct: 292 KNEISYNAMLAGYVQYKKMVIAGELFEAMPCR-NISSW----NTMITGYGQNGGIAQARK 346

Query: 248 VINKMPMKPHAGAWGALLNA 267
           + + MP +    +W A+++ 
Sbjct: 347 LFDMMPQRDCV-SWAAIISG 365



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 49/345 (14%)

Query: 9   GYCQ---KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G+C    +VF+ +     V   AMIS   +     LAR +FD+MPERD  +WN ML GY 
Sbjct: 60  GHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYV 119

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-------------WAH 112
           +  +  EA  LF LM   DV    VS  ++LS     G +D+ R             W  
Sbjct: 120 RNRRLGEAHKLFDLMPKKDV----VSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNG 175

Query: 113 V---YIERNRLKMTVTLGTA-----------LVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           +   Y+   RLK    L  +           L+  Y K   +  A   F  M  R+V +W
Sbjct: 176 LLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISW 235

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
            ++I G A  G   ++  LF+   ++ +R +  T+ +++ G    G+V+E R++FD M  
Sbjct: 236 NTMISGYAQVGDLSQAKRLFN---ESPIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPV 291

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           +  I      Y  ++  Y +  ++  A ++   MP + +  +W  ++           G 
Sbjct: 292 KNEIS-----YNAMLAGYVQYKKMVIAGELFEAMPCR-NISSWNTMITGY----GQNGGI 341

Query: 279 LASRKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
             +RKL + +  ++  ++  + + YA++ +++  +N+   MK  G
Sbjct: 342 AQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 127/287 (44%), Gaps = 21/287 (7%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +PD+V     IS+  + G  D A ++F+ MP R  +++NAM++GY +  K   A  LF  
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   D+    V M++       LG       AH   +    K  V+   A++  Y++ G 
Sbjct: 103 MPERDLFSWNV-MLTGYVRNRRLGE------AHKLFDLMPKKDVVSW-NAMLSGYAQNGF 154

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +++A + F  M  RN  +W  ++     NG  +++  LF       +    +++  ++ G
Sbjct: 155 VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWEL----ISWNCLMGG 210

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                ++ + R+ FD M     I      +  ++  Y + G L +A  + N+ P++    
Sbjct: 211 YVKRNMLGDARQLFDRMPVRDVIS-----WNTMISGYAQVGDLSQAKRLFNESPIRD-VF 264

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
            W A+++    Y    M + A +   E+  KN  +Y  +   Y + K
Sbjct: 265 TWTAMVSG---YVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYK 308


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/442 (43%), Positives = 283/442 (64%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +   +T +++  AKCG ++ AR +FD M E+D + W+ M+ GYA     +E + LF  
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   ++K ++ S+V  LS+C  LGALD G W    I+R+     + +  AL+DMY+KCG 
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGA 363

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M +  + F  MKE+++    + I GLA NG  + S  +F   ++ G+ P+  TF+ +L G
Sbjct: 364 MARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCG 423

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+++G   F+++   Y ++  +EHYGC+VDL+GRAG LD+A  +I  MPM+P+A 
Sbjct: 424 CVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAI 483

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+ CR+ K+T++ E   ++L+ LE  N G YV LSNIY+    WD    VR +M 
Sbjct: 484 VWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMN 543

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+KK+PG S IE++ +VHEF A D++HP  ++I   L ++   ++L G+V  T  V +
Sbjct: 544 KKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFF 603

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEEEKE  L  HSEK+A+A GLIS   G  IR+VKNLRVC DCH+V K+ISK+  REI
Sbjct: 604 DVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREI 663

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFH F  G CSC  YW
Sbjct: 664 VVRDNNRFHCFTNGSCSCNDYW 685



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 3/235 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T+++S  +  G ++ A K+FDE+P+R  + W A+ +GY   G+ REA+ LF  M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK +   +V VLSAC H+G LD G W   Y+E   ++    + T LV++Y+KCG M 
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA   F  M E+++ TW+++I G A N   ++ +ELF  M Q  ++P++ + V  L  C 
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 202 VVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +G ++ G      + R E+    ++ +   L+D+Y + G +    +V  +M  K
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMAN--ALIDMYAKCGAMARGFEVFKEMKEK 377



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 1/211 (0%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +F      +   +N+++ G+       E L LF  ++ H + L+  +   VL ACT   +
Sbjct: 67  LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
              G   H  + +      V   T+L+ +YS  G +N A   F  + +R+V TWT++  G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
              +G   ++++LF  M + GV+P+    V VL  C  VG ++ G E       E  ++ 
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG-EWIVKYMEEMEMQK 245

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
                  LV+LY + G++++A  V + M  K
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDSMVEK 276



 Score = 41.6 bits (96), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           N++ + S+I G   N    ++L+LF  +++ G+  +  TF  VL+ C      + G +  
Sbjct: 75  NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID-L 133

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            S+  + G    +     L+ +Y  +GRL++A  + +++P +     W AL +       
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS-VVTWTALFSGYTTSGR 192

Query: 274 TEMGELASRKLVELETKNHGAYVL 297
                   +K+VE+  K    +++
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIV 216


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/467 (45%), Positives = 294/467 (62%), Gaps = 17/467 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ V  G    DV     +I     CG +DLARK+FDEMPER  ++WN+M+    + G+
Sbjct: 174 HCQIVKHGFGG-DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 232

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTL 126
              AL LF  MQ    + +  +M SVLSAC  LG+L  G WAH ++ R     + M V +
Sbjct: 233 YDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLV 291

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQA 184
             +L++MY KCG++  A   F GM++R++ +W ++I G A +G  E+++  F  M  K+ 
Sbjct: 292 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 351

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            VRPN VTFV +L  C   G V +GR++FD M R+Y IEP LEHYGC+VDL  RAG + E
Sbjct: 352 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITE 411

Query: 245 ALDVINKMPMKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKNH-------GAYV 296
           A+D++  MPMKP A  W +LL+AC +   + E+ E  +R ++  +  N        GAYV
Sbjct: 412 AIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYV 471

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLS +YA +  W+ V  VR++M   G++K PGCS IE++   HEFFAGD +HP+  +I  
Sbjct: 472 LLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQ 531

Query: 357 MLGEISRRLKLAGYVANTN--PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
            L  I  RL+  GY+ + +  P++    +  KE +L  HSE++AIAFGLI+L    PIRI
Sbjct: 532 QLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRI 591

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            KNLRVC DCH+VTK+ISKVFN EIIVRDR RFHHFK+G CSC  YW
Sbjct: 592 FKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 6/233 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFH-LMQIHDVKLNEVSMVS 94
            DV+ A ++FD +       WN ++   A    +  EA  L+  +++  +   ++ +   
Sbjct: 97  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 156

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC ++    +G+  H  I ++     V +   L+ +Y  CG ++ A   F  M ER+
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +W S+I  L   G  + +L+LF  M Q    P+  T  SVL  C  +G +  G     
Sbjct: 217 LVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHA 275

Query: 215 SMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + R+  ++  ++      L+++Y + G L  A  V   M  K    +W A++
Sbjct: 276 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM-QKRDLASWNAMI 327


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/432 (46%), Positives = 288/432 (66%), Gaps = 4/432 (0%)

Query: 34  AKCGDVDLARKMFDEMPE----RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
            KCG++  AR++F+EMPE    +D + W AM+ G+ +  ++  AL  F  MQ  +V+ NE
Sbjct: 183 GKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNE 242

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
            ++V VLSAC+ LGAL+ GRW H Y+ +  +++ + +G AL++MYS+CG++++A   F  
Sbjct: 243 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 302

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           MK+R+V T+ ++I GL+MNG   +++ELF +M    +RP  VTFV VL  C   GLV+ G
Sbjct: 303 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 362

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
            E F SM R+Y +EP +EHYGC+VDL GR GRL+EA D+I  M M P     G LL+AC+
Sbjct: 363 FEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 422

Query: 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGC 329
           M+KN E+GE  +++L +    + G YVLLS++YA S  W     VR  MK  G++K PGC
Sbjct: 423 MHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGC 482

Query: 330 SVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDT 389
           S IEV+ E+HEF  GD  HP+   I   L E++R L+L GY      V+ DIE+ EKE  
Sbjct: 483 SSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWA 542

Query: 390 LCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHH 449
           L  HSE++AI +GLIS +    IR++KNLRVC+DCH   K+I+K+  R+I+VRDRNRFH+
Sbjct: 543 LAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHY 602

Query: 450 FKEGKCSCKGYW 461
           F+ G CSC  YW
Sbjct: 603 FENGACSCGDYW 614



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 6/247 (2%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q + +G H  D      ++ +C+KC  +D A ++F      +   + A++ G+   G 
Sbjct: 59  HAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EA+ L+  M    +  +   M S+L AC    AL +GR  H    +        +   
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 177

Query: 130 LVDMYSKCGNMNKAMDFFWGMKE----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           ++++Y KCG +  A   F  M E    ++   WT++I G   N    ++LE F  M+   
Sbjct: 178 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN 237

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           VRPNE T V VL  C  +G +E GR     MR+ + IE  L     L+++Y R G +DEA
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDEA 296

Query: 246 LDVINKM 252
             V ++M
Sbjct: 297 QTVFDEM 303



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++    A+I+  ++CG +D A+ +FDEM +RD I +N M++G +  GKSR+A+ LF +
Sbjct: 274 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 333

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M    ++   V+ V VL+AC+H G +D G    H      R++  +     +VD+  + G
Sbjct: 334 MVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVG 393

Query: 139 NMNKAMDFFWGMK 151
            + +A D    MK
Sbjct: 394 RLEEAYDLIRTMK 406



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L++  ++S+L    H+   +Q    H  + RN       +   L+   SKC  ++ A   
Sbjct: 37  LDQKQIISLLQRSRHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 93

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F      NVY +T++I G   +G   ++++L+S M    + P+     S+L+ C     +
Sbjct: 94  FQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLAL 153

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            EGRE H  +++  +     +     +++LYG+ G L +A  V  +MP
Sbjct: 154 REGREVHSRALKLGFSSNRLVRLR--IMELYGKCGELGDARRVFEEMP 199


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/444 (43%), Positives = 289/444 (65%), Gaps = 1/444 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D V  TA++S   +C     A K+F +M  +D I W  M   YAQ G  +EAL LF 
Sbjct: 338 YDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ 397

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ+   +    ++V+VL  C HL AL +GR  H +I  NR +M + + TAL++MY KCG
Sbjct: 398 EMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCG 457

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M +AM  F  M +R++  W S++G  A +G  +++L+LF+ M+  GV+ + V+FVSVL 
Sbjct: 458 KMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLS 517

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP-MKPH 257
                G V +G ++F +M +++ I P  E YGC+VDL GRAGR+ EA+D++ K+    P 
Sbjct: 518 ALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPD 577

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              W  LL ACR +  T+  + A+ +++E +  + GAYV+LSN+YA + +WD V  +R++
Sbjct: 578 GILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKL 637

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M+++GVKK PG S IE+   VHEF  GD +HPR + I   L  ++  ++ AGY+ +T  +
Sbjct: 638 MRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMI 697

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++D+E+E KED L  HSE++AIAFGLIS   G P+R++KNLRVC DCH  TK ISK+  R
Sbjct: 698 LHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGR 757

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EI+VRD +RFH+FK+G+CSCK YW
Sbjct: 758 EILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 133/255 (52%), Gaps = 4/255 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V  G+ E DV    + ++     G +  AR++F++M +RD + WN ++  Y Q     EA
Sbjct: 232 VSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEA 291

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  +Q   VK N+++ V +L+  T L +L +G+  H  ++         + TAL+ +
Sbjct: 292 VRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSL 351

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y +C    +A   F  M  ++V TWT +    A NG  +++L+LF  M+  G RP   T 
Sbjct: 352 YGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATL 411

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           V+VL  C  +  +++GR+ H   +   + +E  +E    L+++YG+ G++ EA+ V  KM
Sbjct: 412 VAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKM 469

Query: 253 PMKPHAGAWGALLNA 267
             K     W ++L A
Sbjct: 470 A-KRDILVWNSMLGA 483



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 150/313 (47%), Gaps = 10/313 (3%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  + ++VC   +I   A+CG V  A+++F+ +  +D  AW  M+  Y Q G    AL +
Sbjct: 34  GFEQNNLVC-GHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGM 92

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F+ MQ  DV   +V+ V++L+AC    +L  G   H  I +   +  V +GTAL++MY+K
Sbjct: 93  FYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNK 152

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A D F  ++ R+V +WT++I     +     +  L+  M+  GV PN++T  +V
Sbjct: 153 CGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTV 212

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                    + EG+  +  +     +E  +      V+++G AG L +A  +   M +  
Sbjct: 213 FNAYGDPNYLSEGKFVY-GLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDR 270

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETK----NHGAYVLLSNIYAESKNWDRVI 312
               W  ++      +N   GE A R    L+      N   +VL+ N+Y    +  +  
Sbjct: 271 DVVTWNIVITL--YVQNENFGE-AVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGK 327

Query: 313 NVRQIMKAKGVKK 325
            + +++K  G  +
Sbjct: 328 VIHELVKEAGYDR 340



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 98/199 (49%), Gaps = 2/199 (1%)

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           K +    V++L  C+    +D GR  H ++     +    +   L+ MY++CG++ +A  
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  ++ ++V+ WT +IG     G  +++L +F  M++  V P +VT+V++L  C     
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +++G E    + ++ G E  +     L+++Y + G +  A D   ++  +    +W A++
Sbjct: 121 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRD-VVSWTAMI 178

Query: 266 NACRMYKNTEMGELASRKL 284
            AC  +    +     R++
Sbjct: 179 AACVQHDQFALARWLYRRM 197


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/467 (45%), Positives = 294/467 (62%), Gaps = 17/467 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ V  G    DV     +I     CG +DLARK+FDEMPER  ++WN+M+    + G+
Sbjct: 151 HCQIVKHGFG-GDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 209

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTL 126
              AL LF  MQ    + +  +M SVLSAC  LG+L  G WAH ++ R     + M V +
Sbjct: 210 YDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLV 268

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQA 184
             +L++MY KCG++  A   F GM++R++ +W ++I G A +G  E+++  F  M  K+ 
Sbjct: 269 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 328

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            VRPN VTFV +L  C   G V +GR++FD M R+Y IEP LEHYGC+VDL  RAG + E
Sbjct: 329 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITE 388

Query: 245 ALDVINKMPMKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKNH-------GAYV 296
           A+D++  MPMKP A  W +LL+AC +   + E+ E  +R ++  +  N        GAYV
Sbjct: 389 AIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYV 448

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLS +YA +  W+ V  VR++M   G++K PGCS IE++   HEFFAGD +HP+  +I  
Sbjct: 449 LLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQ 508

Query: 357 MLGEISRRLKLAGYVANTN--PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
            L  I  RL+  GY+ + +  P++    +  KE +L  HSE++AIAFGLI+L    PIRI
Sbjct: 509 QLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRI 568

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            KNLRVC DCH+VTK+ISKVFN EIIVRDR RFHHFK+G CSC  YW
Sbjct: 569 FKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 6/233 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFH-LMQIHDVKLNEVSMVS 94
            DV+ A ++FD +       WN ++   A    +  EA  L+  +++  +   ++ +   
Sbjct: 74  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 133

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC ++    +G+  H  I ++     V +   L+ +Y  CG ++ A   F  M ER+
Sbjct: 134 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 193

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +W S+I  L   G  + +L+LF  M Q    P+  T  SVL  C  +G +  G     
Sbjct: 194 LVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHA 252

Query: 215 SMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + R+  ++  ++      L+++Y + G L  A  V   M  K    +W A++
Sbjct: 253 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM-QKRDLASWNAMI 304


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/463 (45%), Positives = 303/463 (65%), Gaps = 7/463 (1%)

Query: 1   MYAELGCLGYCQKVFDGI-HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           M+A+ G L   + +FD +  + + V    MISA  + G + LAR++FD MP+RD ++WN+
Sbjct: 302 MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNS 361

Query: 60  MLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           M+AGYAQ G+S  ++ LF  ++   D++ +EV++ SVLSAC H+GAL    W    +   
Sbjct: 362 MIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK 421

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            +K+ ++   +L+ MYSKCG++  A   F  M  R+V ++ ++I G A NG G+++++L 
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLV 481

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M++ G+ P+ VT++ VL  C   GL+ EG+  F S++      P ++HY C+VDL GR
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGR 536

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG LDEA  +I  MPMKPHAG +G+LLNA R++K   +GELA+ KL ELE +N G YVLL
Sbjct: 537 AGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLL 596

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA    W+ V  VR++MK  G+KK  G S +E   +VH+F  GD +H +  +I  +L
Sbjct: 597 SNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLL 656

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+ R++K  G+VA+ +  + D+EEEEKE+ L  HSEK+AI F L+  + G  IR+VKNL
Sbjct: 657 AELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNL 716

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH   KMISK+  REI+VRD NRFH F EG CSC  YW
Sbjct: 717 RICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 34/272 (12%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +F+ +   +++  T+M++  AK GD++ AR+ FDEMPER  ++WNAM + YAQ    +EA
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L+LFH M    +  ++ + V  +S+C+ +G           I++  + +   + TAL+DM
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 134 YSKCGNMNKAMDFF-----------W---------------------GMKERNVYTWTSV 161
           ++K GN+  A + F           W                      M +R+V +W S+
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 162 IGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           I G A NG    S+ELF  M     ++P+EVT  SVL  C  +G ++      D + RE 
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREK 421

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            I+  +  +  L+ +Y + G + +A  +   M
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/463 (45%), Positives = 303/463 (65%), Gaps = 7/463 (1%)

Query: 1   MYAELGCLGYCQKVFDGI-HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           M+A+ G L   + +FD +  + + V    MISA  + G + LAR++FD MP+RD ++WN+
Sbjct: 302 MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNS 361

Query: 60  MLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           M+AGYAQ G+S  ++ LF  ++   D++ +EV++ SVLSAC H+GAL    W    +   
Sbjct: 362 MIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK 421

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            +K+ ++   +L+ MYSKCG++  A   F  M  R+V ++ ++I G A NG G+++++L 
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLV 481

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M++ G+ P+ VT++ VL  C   GL+ EG+  F S++      P ++HY C+VDL GR
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGR 536

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG LDEA  +I  MPMKPHAG +G+LLNA R++K   +GELA+ KL ELE +N G YVLL
Sbjct: 537 AGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLL 596

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA    W+ V  VR++MK  G+KK  G S +E   +VH+F  GD +H +  +I  +L
Sbjct: 597 SNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLL 656

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            E+ R++K  G+VA+ +  + D+EEEEKE+ L  HSEK+AI F L+  + G  IR+VKNL
Sbjct: 657 AELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNL 716

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH   KMISK+  REI+VRD NRFH F EG CSC  YW
Sbjct: 717 RICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 34/272 (12%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +F+ +   +++  T+M++  AK GD++ AR+ FDEMPER  ++WNAM + YAQ    +EA
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L+LFH M    +  ++ + V  +S+C+ +G           I++  + +   + TAL+DM
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 134 YSKCGNMNKAMDFF-----------W---------------------GMKERNVYTWTSV 161
           ++K GN+  A + F           W                      M +R+V +W S+
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 162 IGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           I G A NG    S+ELF  M     ++P+EVT  SVL  C  +G ++      D + RE 
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREK 421

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            I+  +  +  L+ +Y + G + +A  +   M
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/467 (45%), Positives = 294/467 (62%), Gaps = 17/467 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ V  G    DV     +I     CG +DLARK+FDEMPER  ++WN+M+    + G+
Sbjct: 231 HCQIVKHGF-GGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 289

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTL 126
              AL LF  MQ    + +  +M SVLSAC  LG+L  G WAH ++ R     + M V +
Sbjct: 290 YDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLV 348

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQA 184
             +L++MY KCG++  A   F GM++R++ +W ++I G A +G  E+++  F  M  K+ 
Sbjct: 349 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 408

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            VRPN VTFV +L  C   G V +GR++FD M R+Y IEP LEHYGC+VDL  RAG + E
Sbjct: 409 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITE 468

Query: 245 ALDVINKMPMKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKNH-------GAYV 296
           A+D++  MPMKP A  W +LL+AC +   + E+ E  +R ++  +  N        GAYV
Sbjct: 469 AIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYV 528

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLS +YA +  W+ V  VR++M   G++K PGCS IE++   HEFFAGD +HP+  +I  
Sbjct: 529 LLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQ 588

Query: 357 MLGEISRRLKLAGYVANTN--PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
            L  I  RL+  GY+ + +  P++    +  KE +L  HSE++AIAFGLI+L    PIRI
Sbjct: 589 QLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRI 648

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            KNLRVC DCH+VTK+ISKVFN EIIVRDR RFHHFK+G CSC  YW
Sbjct: 649 FKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 6/233 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFH-LMQIHDVKLNEVSMVS 94
            DV+ A ++FD +       WN ++   A    +  EA  L+  +++  +   ++ +   
Sbjct: 154 SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 213

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC ++    +G+  H  I ++     V +   L+ +Y  CG ++ A   F  M ER+
Sbjct: 214 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 273

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +W S+I  L   G  + +L+LF  M Q    P+  T  SVL  C  +G +  G     
Sbjct: 274 LVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHA 332

Query: 215 SMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + R+  ++  ++      L+++Y + G L  A  V   M  K    +W A++
Sbjct: 333 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM-QKRDLASWNAMI 384


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/465 (41%), Positives = 302/465 (64%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +KVFD + E DV+  T +I+A A+ G+++ A  +F+ +P +D +AW AM
Sbjct: 194 MYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAM 253

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G+AQ  K +EAL  F  M+   ++ +EV++   +SAC  LGA      A    +++  
Sbjct: 254 VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGY 313

Query: 121 KMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
             +  V +G+AL+DMYSKCGN+ +A++ F  M  +NV++++S+I GLA +G  +++L+LF
Sbjct: 314 SPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLF 373

Query: 179 SLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
             M  Q  ++PN VTFV  L  C   GLV++GR+ F SM + +G+EP  +HY C+VDL G
Sbjct: 374 HYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLG 433

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAGRL EAL++I  M ++PH G WGALL ACR++ N ++ E+A+  L ELE    G Y+L
Sbjct: 434 RAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYIL 493

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS-VIEVDREVHEFFAGDETHPRYNEIEV 356
           LSN+Y+ + +W  V++VR+++K KG+KK P  S V++ + ++H+FF G+  HP   +I+ 
Sbjct: 494 LSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQD 553

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L E+  RL   GY  + + V YD+ +  K   L +H+EK+A+AF L++      I+I+K
Sbjct: 554 KLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMK 613

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH   ++ S+V  R II+RD  RFHHF+ G CSC  +W
Sbjct: 614 NLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 36/247 (14%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           R++ + +  R+P  W A++ GY   GK  EA+ ++  M+  ++     +  ++L AC  +
Sbjct: 104 RRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSM 163

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC------------------------- 137
           G L+ GR  H    R R    V +G  ++DMY KC                         
Sbjct: 164 GDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELI 223

Query: 138 ------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
                 GNM  A D F  +  +++  WT+++ G A N   +++LE F  M+++G+R +EV
Sbjct: 224 AAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEV 283

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDV 248
           T    +  C  +G   +  +    + ++ G  P  +H      L+D+Y + G ++EA++V
Sbjct: 284 TVAGYISACAQLG-ASKYADRAVQIAQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAVNV 341

Query: 249 INKMPMK 255
              M  K
Sbjct: 342 FVSMNNK 348


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/467 (45%), Positives = 294/467 (62%), Gaps = 17/467 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ V  G    DV     +I     CG +DLARK+FDEMPER  ++WN+M+    + G+
Sbjct: 165 HCQIVKHGFGG-DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 223

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTL 126
              AL LF  MQ    + +  +M SVLSAC  LG+L  G WAH ++ R     + M V +
Sbjct: 224 YDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLV 282

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQA 184
             +L++MY KCG++  A   F GM++R++ +W ++I G A +G  E+++  F  M  K+ 
Sbjct: 283 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 342

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            VRPN VTFV +L  C   G V +GR++FD M R+Y IEP LEHYGC+VDL  RAG + E
Sbjct: 343 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITE 402

Query: 245 ALDVINKMPMKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKNH-------GAYV 296
           A+D++  MPMKP A  W +LL+AC +   + E+ E  +R ++  +  N        GAYV
Sbjct: 403 AIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYV 462

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLS +YA +  W+ V  VR++M   G++K PGCS IE++   HEFFAGD +HP+  +I  
Sbjct: 463 LLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQ 522

Query: 357 MLGEISRRLKLAGYVANTN--PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
            L  I  RL+  GY+ + +  P++    +  KE +L  HSE++AIAFGLI+L    PIRI
Sbjct: 523 QLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRI 582

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            KNLRVC DCH+VTK+ISKVFN EIIVRDR RFHHFK+G CSC  YW
Sbjct: 583 FKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 6/233 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFH-LMQIHDVKLNEVSMVS 94
            DV+ A ++FD +       WN ++   A    +  EA  L+  +++  +   ++ +   
Sbjct: 88  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 147

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC ++    +G+  H  I ++     V +   L+ +Y  CG ++ A   F  M ER+
Sbjct: 148 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 207

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +W S+I  L   G  + +L+LF  M Q    P+  T  SVL  C  +G +  G     
Sbjct: 208 LVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHA 266

Query: 215 SMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + R+  ++  ++      L+++Y + G L  A  V   M  K    +W A++
Sbjct: 267 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM-QKRDLASWNAMI 318


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 286/463 (61%), Gaps = 55/463 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +++FD + E D+V  T M+   AK G+ D A+ +FD MP +D  AWNA+
Sbjct: 243 MYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNAL 302

Query: 61  LAGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ Y QCGK +EAL LFH +Q+    K +EV+             L QG           
Sbjct: 303 ISAYEQCGKPKEALELFHELQLSKTAKPDEVT-------------LKQG----------- 338

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +K+   L T+L+DMY KCG++ KA+  F  ++ ++V+ W+++I GLAM+G G+ ++ LFS
Sbjct: 339 MKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFS 398

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++  V+PN VTF ++L  C  VGLVEEGR  F+ M   YG                  
Sbjct: 399 KMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG------------------ 440

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
                      KMPM P A  WGALL AC +++N  + E A  +L+ELE  NHGAYVLLS
Sbjct: 441 -----------KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLS 489

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA++  WDRV  +R++M+  G+KK PGCS IEVD  VHEF  GD +HP   +I   L 
Sbjct: 490 NIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLD 549

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI  RL+  GYV N + ++  +EEE+ KE  L  HSEK+AIAFGLIS  +  PIRIVKNL
Sbjct: 550 EIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNL 609

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH V K++SK+++REI++RDR RFHHF+EG CSC  YW
Sbjct: 610 RVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 12/250 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-- 77
           +P    +    +A +    +D A+++FD++P  +   WN ++  YA      ++L +F  
Sbjct: 66  DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLR 125

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            L Q  D   ++ +   ++ A + L  L  G+  H  + +  L   V +  +L+  Y+KC
Sbjct: 126 MLHQSPDFP-DKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC 184

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +      F  +  R+V +W S+I      G  E++LELF  M+           + + 
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMY 244

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   G VE+ +  FD M  E  I  W      ++  Y + G  D A  + + MP +  
Sbjct: 245 TKC---GSVEDAKRLFDKM-PEKDIVSW----TTMLVGYAKIGEYDAAQGIFDAMPNQDI 296

Query: 258 AGAWGALLNA 267
           A AW AL++A
Sbjct: 297 A-AWNALISA 305


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/442 (43%), Positives = 288/442 (65%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV   +A++   A+C  +D+A ++FD +  ++ ++WNA++AG+A+ G     L  F  
Sbjct: 195 DEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAE 254

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ +       +  SV SA   +GAL+QGRW H ++ ++  K+T  +   ++ MY+K G+
Sbjct: 255 MQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGS 314

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A   F  + +R++ TW +++   A  G G++++  F  +++ G++ N++TF+SVL  
Sbjct: 315 MVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTA 374

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG+++FD M ++Y +EP ++HY   VDL GRAG L EAL  + KMPM+P A 
Sbjct: 375 CSHGGLVKEGKQYFD-MMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAA 433

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL ACRM+KN ++G+ A+  + EL+ ++ G  VLL NIYA +  WD    VR++MK
Sbjct: 434 VWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMK 493

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           A GVKK P CS +E++  VH F A D THP+  EI  M  E++ R+K AGYV NT+ V+ 
Sbjct: 494 ATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLL 553

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            I+E+E+E  L  HSEK+A+AF LI++  G  IRI+KN+R+C DCH   + +S+VF REI
Sbjct: 554 HIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREI 613

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHF  G CSC  YW
Sbjct: 614 VVRDTNRFHHFSNGSCSCGDYW 635



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 4/245 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++I    KCG V  AR +FD +P RD ++W  ++ GYAQ     EAL L   M     + 
Sbjct: 102 SLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRP 161

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S L A    G    G   H    +  L   V +G+AL+DMY++C  M+ A+  F
Sbjct: 162 SGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVF 221

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +  +N  +W ++I G A  G GE +L  F+ M++ G      T+ SV      +G +E
Sbjct: 222 DWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALE 281

Query: 208 EGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +GR  H   ++    +  ++ +   ++ +Y ++G + +A  V +++  +     W  +L 
Sbjct: 282 QGRWVHAHMIKSGQKLTAFVAN--TILGMYAKSGSMVDARKVFDRVDQRDLV-TWNTMLT 338

Query: 267 ACRMY 271
           A   Y
Sbjct: 339 AFAQY 343



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 5/201 (2%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+++AC     L   R  H ++ R+RL     L  +L+ MY KCG ++ A   F G+  R
Sbjct: 67  SIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTR 126

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V +WT +I G A N    ++L L   M +A  RP+  TF S L+     G    G E  
Sbjct: 127 DVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIG-EQM 185

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            ++  +Y ++  +     L+D+Y R  ++D A+ V + +  K    +W AL+     +  
Sbjct: 186 HALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV-SWNALIAG---FAR 241

Query: 274 TEMGELASRKLVELETKNHGA 294
              GE    K  E++    GA
Sbjct: 242 KGDGETTLMKFAEMQRNGFGA 262


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 286/436 (65%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA+  + +K GD + A K+F+ + E+D +AW+AML+GYAQ G    A+ +F  +    V+
Sbjct: 431 TALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE 490

Query: 87  LNEVSMVSVLSACTH-LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            NE +  SVL+AC     +++QG+  H    ++     + + +ALV MY+K GN+  A +
Sbjct: 491 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANE 550

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F    +R++ +W S+I G A +G G+KSL++F  M+   +  + +TF+ V+  C   GL
Sbjct: 551 VFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGL 610

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V EG+ +FD M ++Y I P +EHY C+VDLY RAG L++A+D+INKMP    A  W  LL
Sbjct: 611 VNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLL 670

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++ N ++GELA+ KL+ L+ ++  AYVLLSNIYA + NW     VR++M  K VKK
Sbjct: 671 AACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKK 730

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
             G S IEV  +   F AGD +HP+ + I + L E+S RLK AGY  +T  V++D+EEE 
Sbjct: 731 EAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEH 790

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L +HSE++AIAFGLI+   G PI+IVKNLRVC DCH V K+ISK+  R+I+VRD N
Sbjct: 791 KEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSN 850

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK G CSC  YW
Sbjct: 851 RFHHFKGGSCSCGDYW 866



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 151/284 (53%), Gaps = 12/284 (4%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCG 68
           +CQ + +G  + D+  +TA++ A +KC ++D A K+F  M   ++ ++W A+++GY Q G
Sbjct: 317 HCQVIKNG-SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNG 375

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           ++  A++LF  M+   V+ N  +  ++L+A     A       H  + +   + + ++GT
Sbjct: 376 RTDRAMNLFCQMRREGVRPNHFTYSTILTA----NAAVSPSQIHALVVKTNYENSPSVGT 431

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL D YSK G+ N+A   F  + E+++  W++++ G A  G  E ++++F  + + GV P
Sbjct: 432 ALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEP 491

Query: 189 NEVTFVSVLRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           NE TF SVL  C      VE+G++ F S   + G    L     LV +Y + G ++ A +
Sbjct: 492 NEFTFSSVLNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANE 550

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           V  K  +     +W ++++    Y     G+ + +   E+ +KN
Sbjct: 551 VF-KRQVDRDLVSWNSMISG---YAQHGCGKKSLKIFEEMRSKN 590



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 4/259 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ +  G  E DV   T+++    K   V+   ++FDEM  ++ ++W ++LAGY Q G 
Sbjct: 115 HCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGL 173

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + +AL LF  MQ+  +K N  +  +VL      GA+++G   H  + ++ L  T+ +G +
Sbjct: 174 NEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           +V+MYSK   ++ A   F  M+ RN  +W S+I G   NG   ++ ELF  M+  GV+  
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLT 293

Query: 190 EVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           +  F +V++ C  +  +   ++ H   ++   G +  L     L+  Y +   +D+A  +
Sbjct: 294 QTIFATVIKLCANIKEMSFAKQLHCQVIKN--GSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 249 INKMPMKPHAGAWGALLNA 267
              M    +  +W A+++ 
Sbjct: 352 FCMMHGVQNVVSWTAIISG 370



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           ++++FDE P++     N +L  +++  +++EAL+LF  ++      +  S+  VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L     G+  H    +      V++GT+LVDMY K  ++      F  M+ +NV +WTS+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           + G   NG  E++L+LFS M+  G++PN  TF +VL G    G VE+G +   +M  + G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++  +     +V++Y ++  + +A  V + M  + +A +W +++
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMI 266


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/442 (42%), Positives = 281/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D V  +A+     KCG ++ AR +FD+M +RD + W AM+  Y Q G+ +E   LF  
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFAD 294

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +    ++ NE +   VL+AC +  + + G+  H Y+ R          +ALV MYSKCGN
Sbjct: 295 LLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGN 354

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A   F    + ++++WTS+I G A NG  ++++  F L+ ++G +P+ +TFV VL  
Sbjct: 355 MVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSA 414

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV++G ++F S++ +YG+    +HY C++DL  R+G+ DEA ++I+KM MKP   
Sbjct: 415 CAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKF 474

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +LL  CR++ N ++ + A+  L E+E +N   YV L+NIYA +  W  V  +R+ M 
Sbjct: 475 LWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMD 534

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +GV K PG S I + R+VH F  GD++HP+  EI   LG++S+R+K  G+V +TN V++
Sbjct: 535 DRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLH 594

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+E+KE  L  HSEK+A+AFG+IS  EG PI++ KNLR C DCH   K ISK+ NR+I
Sbjct: 595 DVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKI 654

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFH F++G CSC+ YW
Sbjct: 655 IVRDSNRFHFFEDGHCSCRDYW 676



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 145/266 (54%), Gaps = 3/266 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+   L   QK+FD + E D+     +IS  AK G +  A+ +FD+MPERD  +W AM
Sbjct: 114 MYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAM 173

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY +  +  EAL LF +M+  D  K N+ ++ S L+A   +  L  G+  H YI R  
Sbjct: 174 ISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTG 233

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L     + +AL DMY KCG++ +A   F  M +R++ TWT++I     +G  ++  +LF+
Sbjct: 234 LDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFA 293

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            + ++G+RPNE TF  VL  C      E G++    M R  G +P+      LV +Y + 
Sbjct: 294 DLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTR-VGFDPFSFAASALVHMYSKC 352

Query: 240 GRLDEALDVINKMPMKPHAGAWGALL 265
           G +  A  V  + P +P   +W +L+
Sbjct: 353 GNMVSAERVFKETP-QPDLFSWTSLI 377



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 37/219 (16%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q  + +EAL + H +     K +     +++ +C     L QG+  H +I+ +     + 
Sbjct: 51  QQNRLKEALQILHQID----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLF 106

Query: 126 LGTALVDMYSKC-------------------------------GNMNKAMDFFWGMKERN 154
           +   L++MY+KC                               G + +A   F  M ER+
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERD 166

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
            ++WT++I G   +    ++LELF +MK++   + N+ T  S L     V  +  G+E  
Sbjct: 167 NFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIH 226

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             + R  G++     +  L D+YG+ G ++EA  + +KM
Sbjct: 227 GYIMRT-GLDSDEVVWSALSDMYGKCGSIEEARHIFDKM 264


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 290/448 (64%), Gaps = 1/448 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V  G H  D+    ++I +  KC  V+ A ++F+E    D +++ +M+  YAQ G+  EA
Sbjct: 460 VKSGFHS-DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEA 518

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L LF  MQ  ++K +     S+L+AC +L A +QG+  HV+I +    + +  G +LV+M
Sbjct: 519 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNM 578

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+KCG+++ A   F  + ER + +W+++IGGLA +G G ++L+LF+ M + GV PN +T 
Sbjct: 579 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 638

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           VSVL  C   GLV E + +F+SM   +G +P  EHY C++DL GRAG+++EA++++NKMP
Sbjct: 639 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 698

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
            + +A  WGALL A R++K+ E+G  A+  L  LE +  G +VLL+NIYA +  W+ V  
Sbjct: 699 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAE 758

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR++M+   VKK PG S IEV  +V+ F  GD +H R  EI   L E+S  +  AGYV  
Sbjct: 759 VRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPM 818

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
               ++D+E+ EKE  L  HSEK+A+AFGLI+  +G PIR+ KNLRVC DCH   K I K
Sbjct: 819 VEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICK 878

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           + +REIIVRD NRFHHFK+G CSC  YW
Sbjct: 879 IVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 8/257 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   +  +I+  +KC     ARK+ DE  E D ++W+A+++GYAQ G    AL  FH M 
Sbjct: 90  DPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  VK NE +  SVL AC+ +  L  G+  H  +  +  +  V +   LV MY+KC    
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  + ERNV +W ++           +++ LF  M  +G++PNE +  S++  C 
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC- 268

Query: 202 VVGLVEEGRE---HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             GL +  R    H   ++  Y  +P+  +   LVD+Y + G L +A+ V  K+  +P  
Sbjct: 269 -TGLRDSSRGKIIHGYLIKLGYDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDI 324

Query: 259 GAWGALLNACRMYKNTE 275
            +W A++  C ++++ E
Sbjct: 325 VSWNAVIAGCVLHEHHE 341



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 153/337 (45%), Gaps = 48/337 (14%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISAC--------------------------- 33
           MYA++G L     VF+ I +PD+V   A+I+ C                           
Sbjct: 302 MYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKM 361

Query: 34  ----------------AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
                           +KC  ++ AR  F+ +PE+D IAWNA+++GY+Q  +  EAL LF
Sbjct: 362 DMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLF 421

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M    +  N+ ++ ++L +   L  +   R  H    ++     + +  +L+D Y KC
Sbjct: 422 VEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC 481

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
            ++  A   F      ++ ++TS+I   A  G GE++L+LF  M+   ++P+     S+L
Sbjct: 482 SHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLL 541

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +   E+G++ H   ++  YG    +     LV++Y + G +D+A    +++  + 
Sbjct: 542 NACANLSAFEQGKQLHVHILK--YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG 599

Query: 257 HAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNH 292
              +W A++     + +     +L ++ L E  + NH
Sbjct: 600 IV-SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNH 635



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 29/252 (11%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     ++   AKC +   ++++FDE+PER+ ++WNA+ + Y Q     EA+ LF+ 
Sbjct: 189 EGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYE 248

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +K NE S+ S+++ACT L    +G+  H Y+ +           ALVDMY+K G+
Sbjct: 249 MVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGD 308

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A+  F  +K+ ++ +W +VI G  ++   E++LEL   MK+                
Sbjct: 309 LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR---------------- 352

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                     + H   M+ +  +E  L     LVD+Y +   L++A    N +P K    
Sbjct: 353 ----------QLHSSLMKMD--MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLI- 399

Query: 260 AWGALLNACRMY 271
           AW A+++    Y
Sbjct: 400 AWNAIISGYSQY 411



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 50/314 (15%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAWNAMLAGYA 65
           + + V  GI +P+    ++M++AC    D    + +   + +     DP + NA++  YA
Sbjct: 246 FYEMVLSGI-KPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYA 304

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT----HLGALD----QGRWAHVYIER 117
           + G   +A+ +F  ++  D+    VS  +V++ C     H  AL+      R  H  + +
Sbjct: 305 KVGDLADAISVFEKIKQPDI----VSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMK 360

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             ++  + +   LVDMYSKC  +  A   F  + E+++  W ++I G +      ++L L
Sbjct: 361 MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSL 420

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRRE-----YGIEPWLEHYG- 230
           F  M + G+  N+ T  ++L+    + +V   R+ H  S++       Y +   ++ YG 
Sbjct: 421 FVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGK 480

Query: 231 -----------------------CLVDLYGRAGRLDEALDV---INKMPMKPHAGAWGAL 264
                                   ++  Y + G+ +EAL +   +  M +KP      +L
Sbjct: 481 CSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSL 540

Query: 265 LNACRMYKNTEMGE 278
           LNAC      E G+
Sbjct: 541 LNACANLSAFEQGK 554



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 41/265 (15%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++    Q  +  +   + +L+   +     VS   +LS C    +L  G   H +I ++ 
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L    ++   L+++YSKC     A        E ++ +W+++I G A NG G  +L  F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR----------------------------- 210
            M   GV+ NE TF SVL+ C +V  +  G+                             
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD 206

Query: 211 EHFDSMR-----REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM---KPHAGAWG 262
           E  DS R      E  +  W   + C    Y +     EA+ +  +M +   KP+  +  
Sbjct: 207 EFLDSKRLFDEIPERNVVSWNALFSC----YVQXDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 263 ALLNACRMYKNTEMGELASRKLVEL 287
           +++NAC   +++  G++    L++L
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLIKL 287


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/442 (43%), Positives = 286/442 (64%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV   +A++   A+C  +D+A  +FD +  ++ ++WNA++AG+A+       L  F  
Sbjct: 193 DEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 252

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ +       +  S+ SA   +GAL+QGRW H ++ ++  K+T  +G  ++ MY+K G+
Sbjct: 253 MQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGS 312

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A   F  M +R++ TW +++  LA  G G++++  F  +++ G++ N++TF+SVL  
Sbjct: 313 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 372

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG+ +FD M ++Y ++P ++HY   VDL GRAG L EAL  + KMPM+P A 
Sbjct: 373 CSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAA 431

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL ACRM+KN +MG+ A+  + EL+  + G  VLL NIYA +  W+    VR++MK
Sbjct: 432 VWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMK 491

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           A GVKK P CS ++++  VH F A D+THP+  +I  M  EI+ R+K AGYV NT  V+ 
Sbjct: 492 ATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLL 551

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            I E+E+E  L  HSEK+A+AF LI++  G  IRI+KN+R+C DCH   K +SKVF REI
Sbjct: 552 HINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREI 611

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHF EG CSC  YW
Sbjct: 612 VVRDTNRFHHFSEGSCSCGDYW 633



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 4/251 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     ++I    KCG V  AR +FD+MP RD ++W  ++AGYAQ     EA+ L   M 
Sbjct: 94  DAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDML 153

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + N  +  S+L A    G    G   H    +      V +G+AL+DMY++C  M+
Sbjct: 154 RARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMD 213

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  +  +N  +W ++I G A    GE +L  F+ M++ G      T+ S+     
Sbjct: 214 MAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFA 273

Query: 202 VVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +G +E+GR  H   ++    +  ++ +   ++ +Y ++G + +A  V ++M  K     
Sbjct: 274 RIGALEQGRWVHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRMD-KRDLVT 330

Query: 261 WGALLNACRMY 271
           W  +L A   Y
Sbjct: 331 WNTMLTALAQY 341



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 5/201 (2%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+++AC     L   R  H ++ R+ L     L  +L+ MY KCG ++ A   F  M  R
Sbjct: 65  SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSR 124

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V +WT +I G A N    +++ L   M +A  RPN  TF S+L+     G    G E  
Sbjct: 125 DVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG-EQM 183

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            ++  +Y  +  +     L+D+Y R  ++D A+ V +++  K    +W AL+     +  
Sbjct: 184 HALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEV-SWNALIAG---FAR 239

Query: 274 TEMGELASRKLVELETKNHGA 294
              GE    K  E++    GA
Sbjct: 240 KADGETTLMKFAEMQRNGFGA 260



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + D+V                                WN M
Sbjct: 306 MYAKSGSMVDARKVFDRMDKRDLV-------------------------------TWNTM 334

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L   AQ G  +EA+  F  ++   ++LN+++ +SVL+AC+H G + +G+     ++   +
Sbjct: 335 LTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNV 394

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           +  +    + VD+  + G + +A+ F + M  E     W +++G   M+
Sbjct: 395 QPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 443


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/436 (44%), Positives = 276/436 (63%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+++   +CG +  A+ +F+    RD I+WN+M+AG+AQ G    A  LF  MQ  +++
Sbjct: 470 NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            + ++  SVLS C +  AL+ G+  H  I  + L++ V LG AL++MY +CG++  A + 
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNV 589

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGL 205
           F  ++ R+V +WT++IGG A  G   K++ELF  M+  G RP +  TF S+L  C   GL
Sbjct: 590 FHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGL 649

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V EG + F SM  EYG+ P +EHYGCLV L GRA R  EA  +IN+MP  P A  W  LL
Sbjct: 650 VLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 709

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++ N  + E A+   ++L  +N   Y+LLSN+YA +  WD V  +R++M+ +G++K
Sbjct: 710 GACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRK 769

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG S IEVD  +HEF A D +HP   EI   L  +S  ++ AGY  +T  V++D+ +  
Sbjct: 770 EPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAH 829

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           +E +LC HSE++AIA+GLI    G PIRI KNLR+C DCH  +K ISK+  REII RD N
Sbjct: 830 QETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 889

Query: 446 RFHHFKEGKCSCKGYW 461
           RFH FK GKCSC+ YW
Sbjct: 890 RFHSFKNGKCSCEDYW 905



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 149/265 (56%), Gaps = 3/265 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           E G L +     DG H  DV    A+IS  A+CGD+  AR++F  MP+RD I+WNA++AG
Sbjct: 347 EAGKLIHSHISEDG-HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YA+     EA+ L+  MQ   VK   V+ + +LSAC +  A   G+  H  I R+ +K  
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             L  AL++MY +CG++ +A + F G + R+V +W S+I G A +G+ E + +LF  M+ 
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQN 525

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
             + P+ +TF SVL GC     +E G++    +  E G++  +     L+++Y R G L 
Sbjct: 526 EELEPDNITFASVLSGCKNPEALELGKQIHGRI-TESGLQLDVNLGNALINMYIRCGSLQ 584

Query: 244 EALDVINKMPMKPHAGAWGALLNAC 268
           +A +V + +  +    +W A++  C
Sbjct: 585 DARNVFHSLQHR-DVMSWTAMIGGC 608



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 3/229 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   TA+++ C +CGDVD A++ F  + +RD + +NA++A  AQ G + EA   ++ M+
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V LN  + +S+L+AC+   AL+ G+  H +I  +     V +G AL+ MY++CG++ 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA + F+ M +R++ +W ++I G A      +++ L+  M+  GV+P  VTF+ +L  C 
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
                 +G+  H D +R   GI+        L+++Y R G L EA +V 
Sbjct: 443 NSSAYADGKMIHEDILRS--GIKSNGHLANALMNMYRRCGSLMEAQNVF 489



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 12/273 (4%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++    ++ D   Q +++S   KCGD+  AR++F  +  RD +++N ML  YAQ    +E
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKE 212

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
            L LF  M    +  ++V+ +++L A T    LD+G+  H       L   + +GTALV 
Sbjct: 213 CLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVT 272

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           M  +CG+++ A   F G+ +R+V  + ++I  LA +G   ++ E +  M+  GV  N  T
Sbjct: 273 MCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTT 332

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           ++S+L  C     +E G+    S   E G    ++    L+ +Y R G L +A ++   M
Sbjct: 333 YLSILNACSTSKALEAGKL-IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 253 PMKPHAGAWGALL----------NACRMYKNTE 275
           P K    +W A++           A R+YK  +
Sbjct: 392 P-KRDLISWNAIIAGYARREDRGEAMRLYKQMQ 423



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 1/225 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD+     +I+   KC  V  A ++F EMP RD I+WN++++ YAQ G  ++A  LF  M
Sbjct: 60  PDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 119

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q      N+++ +S+L+AC     L+ G+  H  I +   +    +  +L+ MY KCG++
Sbjct: 120 QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDL 179

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A   F G+  R+V ++ +++G  A     ++ L LF  M   G+ P++VT++++L   
Sbjct: 180 PRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAF 239

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
               +++EG+     +  E G+   +     LV +  R G +D A
Sbjct: 240 TTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
            CG  RE +   H  Q    + +  + V++L  CT    L + +  H  +    +   + 
Sbjct: 6   HCGPDREDVSNTH--QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIF 63

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L   L++MY KC ++  A   F  M  R+V +W S+I   A  G  +K+ +LF  M+ AG
Sbjct: 64  LSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG 123

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
             PN++T++S+L  C     +E G++ H   ++  Y  +P +++   L+ +YG+ G L  
Sbjct: 124 FIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPR 181

Query: 245 ALDVI 249
           A  V 
Sbjct: 182 ARQVF 186



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I+   +CG +  AR +F  +  RD ++W AM+ G A  G+  +A+ LF  MQ
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 82  IHDVKLNEVS-MVSVLSACTHLGALDQG 108
               +  + S   S+LSAC H G + +G
Sbjct: 626 NEGFRPPDGSTFTSILSACNHAGLVLEG 653


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/449 (44%), Positives = 290/449 (64%), Gaps = 1/449 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
            V  G H  D+    ++I +  KC  V+ A ++F+E    D +++ +M+  YAQ G+  E
Sbjct: 486 SVKSGFHS-DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEE 544

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL LF  MQ  ++K +     S+L+AC +L A +QG+  HV+I +    + +  G +LV+
Sbjct: 545 ALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVN 604

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+KCG+++ A   F  + ER + +W+++IGGLA +G G ++L+LF+ M + GV PN +T
Sbjct: 605 MYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHIT 664

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            VSVL  C   GLV E + +F+SM   +G +P  EHY C++DL GRAG+++EA++++NKM
Sbjct: 665 LVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKM 724

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P + +A  WGALL A R++K+ E+G  A+  L  LE +  G +VLL+NIYA +  W+ V 
Sbjct: 725 PFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVA 784

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR++M+   VKK PG S IEV  +V+ F  GD +H R  EI   L E+S  +  AGYV 
Sbjct: 785 EVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVP 844

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
                ++D+E+ EKE  L  HSEK+A+AFGLI+  +G PIR+ KNLRVC DCH   K I 
Sbjct: 845 MVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYIC 904

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+ +REIIVRD NRFHHFK+G CSC  YW
Sbjct: 905 KIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 139/252 (55%), Gaps = 2/252 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     ++   AKC +   ++++FDE+PER+ ++WNA+ + Y Q     EA+ LF+ 
Sbjct: 189 EGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYE 248

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +K NE S+ S+++ACT L    +G+  H Y+ +           ALVDMY+K G+
Sbjct: 249 MVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGD 308

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A+  F  +K+ ++ +W +VI G  ++   E++LEL   MK++G+ PN  T  S L+ 
Sbjct: 309 LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKA 368

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +GL E GR+   S+ +   +E  L     LVD+Y +   L++A    N +P K    
Sbjct: 369 CAGMGLKELGRQLHSSLMK-MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLI- 426

Query: 260 AWGALLNACRMY 271
           AW A+++    Y
Sbjct: 427 AWNAIISGYSQY 438



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 132/257 (51%), Gaps = 8/257 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   +  +I+  +KC +   ARK+ DE  E D ++W+A+++GYAQ G    AL  FH M 
Sbjct: 90  DPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  VK NE +  SVL AC+ +  L  G+  H  +  +  +  V +   LV MY+KC    
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  + ERNV +W ++           +++ LF  M  +G++PNE +  S++  C 
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC- 268

Query: 202 VVGLVEEGRE---HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             GL +  R    H   ++  Y  +P+  +   LVD+Y + G L +A+ V  K+  +P  
Sbjct: 269 -TGLRDSSRGKIIHGYLIKLGYDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDI 324

Query: 259 GAWGALLNACRMYKNTE 275
            +W A++  C ++++ E
Sbjct: 325 VSWNAVIAGCVLHEHHE 341



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 137/275 (49%), Gaps = 5/275 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+     ++   +KC  ++ AR  F+ +PE+D IAWNA+++GY+Q  +  EAL LF  
Sbjct: 391 ESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVE 450

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    +  N+ ++ ++L +   L  +   R  H    ++     + +  +L+D Y KC +
Sbjct: 451 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 510

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F      ++ ++TS+I   A  G GE++L+LF  M+   ++P+     S+L  
Sbjct: 511 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 570

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++  YG    +     LV++Y + G +D+A    +++  +   
Sbjct: 571 CANLSAFEQGKQLHVHILK--YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIV 628

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNH 292
            +W A++     + +     +L ++ L E  + NH
Sbjct: 629 -SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNH 662



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 33/290 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A++   AK GD+  A  +F+++ + D ++WNA++AG        +AL L   M+
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  N  ++ S L AC  +G  + GR  H  + +  ++  + +   LVDMYSKC  + 
Sbjct: 352 RSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + E+++  W ++I G +      ++L LF  M + G+  N+ T  ++L+   
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 471

Query: 202 VVGLVEEGRE-HFDSMRRE-----YGIEPWLEHYG------------------------C 231
            + +V   R+ H  S++       Y +   ++ YG                         
Sbjct: 472 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 531

Query: 232 LVDLYGRAGRLDEALDV---INKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           ++  Y + G+ +EAL +   +  M +KP      +LLNAC      E G+
Sbjct: 532 MITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 581



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 110/265 (41%), Gaps = 41/265 (15%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++    Q  +  +   + +L+   +     VS   +LS C    +L  G   H +I ++ 
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L    ++   L+++YSKC N   A        E ++ +W+++I G A NG G  +L  F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR----------------------------- 210
            M   GV+ NE TF SVL+ C +V  +  G+                             
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD 206

Query: 211 EHFDSMR-----REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM---KPHAGAWG 262
           E  DS R      E  +  W   + C V +        EA+ +  +M +   KP+  +  
Sbjct: 207 EFLDSKRLFDEIPERNVVSWNALFSCYVQI----DFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 263 ALLNACRMYKNTEMGELASRKLVEL 287
           +++NAC   +++  G++    L++L
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLIKL 287


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/441 (48%), Positives = 288/441 (65%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV  Q A+++   KCGD+  ARK+FD++ ER  +AWN+M++GY Q G ++EA+ LF  M+
Sbjct: 145 DVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMK 204

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ +  + VSVLSAC HLGA   G W H YI  N L + V LGT+L++MY +CGN++
Sbjct: 205 ETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVS 264

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA + F  MKERNV  WT++I G   NG G +++ELF  M++ G+ PN +TFV+VL  C 
Sbjct: 265 KAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACA 324

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN-KMPMKPHAGA 260
             GLV EGR  F S+R EY + P +EH  CLVD+ GRAG LDEA + I  ++P  P    
Sbjct: 325 HAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAI 384

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
             A+L AC+M+KN ++G   +  L+  E +N   YV+LSNIYA +   D+V  VR  M  
Sbjct: 385 LTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIR 444

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           K +KK  G S +EVD++ + F  GD++H   N I   L E+  +   AGYV  ++ VM++
Sbjct: 445 KCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHE 504

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EEEE+E  L  HSEK+AIAFGL+    G PIRIVKNLR+C DCH   K IS + +REII
Sbjct: 505 LEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREII 564

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD+ RFHHFK G CSC  YW
Sbjct: 565 VRDKLRFHHFKVGSCSCLDYW 585



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 130/281 (46%), Gaps = 44/281 (15%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDV 85
           T +++     G +   R++F  +P  D   + +++   ++    S  +L+ +  M + +V
Sbjct: 48  TKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNV 107

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             +  +  SV+ +C  L AL  GR  H ++  +   + V +  ALV +Y KCG++  A  
Sbjct: 108 SPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARK 167

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  ++ER++  W S+I G   NG  ++++ LF  MK+ GV P+  TFVSVL  C  +G 
Sbjct: 168 VFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGA 227

Query: 206 -----------------------------------VEEGREHFDSMRREYGIEPWLEHYG 230
                                              V + RE FDSM +E  +  W     
Sbjct: 228 FSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSM-KERNVVAWT---- 282

Query: 231 CLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
            ++  YG  G   +A+++ ++M    + P++  + A+L+AC
Sbjct: 283 AMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSAC 323


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/440 (45%), Positives = 288/440 (65%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T M+    + G VD AR++FD MP R+ ++WN+M++GY +  +  +AL +F  M+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N     S L ACT  GAL +GR  + ++E++ +++   L TA+VDMY KCG ++
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  +  R + TW  +IGG A++G  + +LELF  M+ AGV P++VT ++VL  C 
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G V EGR + + +   +GIEP  EHYGC+VDL+GRAG+LDEA  VI++MPM P     
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL AC+++ + ++GE    ++++L+  N G YVLL+N+ A +  WD V  VR++M  +
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            V K  G SVIEVD E  EF  G+  HP+  EI  M  ++  R++  GYV +T   ++D+
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EE+KE  L  HSEK+AIAFGL+  +    +RI KNLRVC DCH+ TK +S+VF REI+V
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR+RFHHFK+G CSCK YW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 81/144 (56%), Gaps = 7/144 (4%)

Query: 6   GCLGYCQKVF-----DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           G LG  ++++      GI E D    TA++    KCG VD A  +FD +P R    WN M
Sbjct: 244 GALGRGREIYRWVEQSGI-EVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCM 302

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           + G+A  G+  +AL LFH M+   V  ++V++++VL+AC H G + +G R+ +  + R+ 
Sbjct: 303 IGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHG 362

Query: 120 LKMTVTLGTALVDMYSKCGNMNKA 143
           ++        +VD++ + G +++A
Sbjct: 363 IEPKGEHYGCMVDLFGRAGQLDEA 386


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/440 (45%), Positives = 288/440 (65%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T M+    + G VD AR++FD MP R+ ++WN+M++GY +  +  +AL +F  M+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N     S L ACT  GAL +GR  + ++E++ +++   L TA+VDMY KCG ++
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  +  R + TW  +IGG A++G  + +LELF  M+ AGV P++VT ++VL  C 
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G V EGR + + +   +GIEP  EHYGC+VDL+GRAG+LDEA  VI++MPM P     
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL AC+++ + ++GE    ++++L+  N G YVLL+N+ A +  WD V  VR++M  +
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            V K  G SVIEVD E  EF  G+  HP+  EI  M  ++  R++  GYV +T   ++D+
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EE+KE  L  HSEK+AIAFGL+  +    +RI KNLRVC DCH+ TK +S+VF REI+V
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR+RFHHFK+G CSCK YW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 82/144 (56%), Gaps = 7/144 (4%)

Query: 6   GCLGYCQKVF-----DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           G LG  ++++      GI E D    TA++    KCG VD A ++FD +P R    WN M
Sbjct: 244 GALGRGREIYRWVEQSGI-EVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCM 302

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           + G+A  G+  +AL LFH M+   V  ++V++++VL+AC H G + +G R+ +  + R+ 
Sbjct: 303 IGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHG 362

Query: 120 LKMTVTLGTALVDMYSKCGNMNKA 143
           ++        +VD++ + G +++A
Sbjct: 363 IEPKGEHYGCMVDLFGRAGQLDEA 386


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/491 (40%), Positives = 300/491 (61%), Gaps = 30/491 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+++G L   ++VFD + + DVV   AMI+  ++  D  +AR++FD+M ++D ++W  M
Sbjct: 159 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTM 218

Query: 61  LAGYA------------------------------QCGKSREALHLFHLMQIHDVKLNEV 90
           +AGYA                              Q G ++EA+  FH M++ +   N V
Sbjct: 219 MAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSV 278

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           + VSVL A  +L A  +G   H  I +        +G +L+DMY+KCG ++ +   F  M
Sbjct: 279 TFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEM 338

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
             ++  +W +++ G A++G G++++ LFSLM+++ V+ + V+FVSVL  C   GLVEEGR
Sbjct: 339 DHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGR 398

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           + F SM  +Y I+P LEHY C+VDL GRAG  DE L  I  MP++P AG WGALL +CRM
Sbjct: 399 KIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRM 458

Query: 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS 330
           + N ++GE+A   LV+LE +N   +V+LS+IYA+S  W      R  M   G+KK PGCS
Sbjct: 459 HSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCS 518

Query: 331 VIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTL 390
            +E+  +VH F  GD++HP+   + ++   +  +++  GYV + + V+ ++EEE+KE  L
Sbjct: 519 WVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFL 578

Query: 391 CKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHF 450
             HSE++AI F L++   G  I+IVKNLRVC DCH  TK ISK+  R IIVRD  RFHHF
Sbjct: 579 YSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHF 638

Query: 451 KEGKCSCKGYW 461
           ++G CSC  YW
Sbjct: 639 EDGICSCNDYW 649



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 116/319 (36%), Gaps = 101/319 (31%)

Query: 10  YCQKVFDGI-HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           + Q +  G  H   +     + S   KC   DLAR +FD  P    I WN+M+  Y +  
Sbjct: 72  HAQIIVSGFKHHHSITHLINLYSLFHKC---DLARSVFDSTPNPSRILWNSMIRAYTRSK 128

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           +  EAL +++ M                                  +E+  L+  V +G 
Sbjct: 129 QYNEALEMYYCM----------------------------------VEKGGLERDVFIGA 154

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGL----------------------- 165
            LVDMYSK G++ +A + F  M +R+V  W ++I GL                       
Sbjct: 155 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVS 214

Query: 166 --------AMNGAGEKSLELFSLMKQAGV------------------------------R 187
                   A NG   + LELF  MK   V                               
Sbjct: 215 WGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 274

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           PN VTFVSVL     +    EG   F +   + G          L+D+Y + G+LD +  
Sbjct: 275 PNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 333

Query: 248 VINKMPMKPHAGAWGALLN 266
           + N+M  K    +W A+L+
Sbjct: 334 LFNEMDHKDTV-SWNAMLS 351


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/442 (42%), Positives = 279/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +V   +++I   AKC  V  + ++F  + ERD I+WN+++AG  Q G   E L  F  
Sbjct: 332 DAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQ 391

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +K    S  S++ AC HL  L  G+  H YI RN     + + ++LVDMY+KCGN
Sbjct: 392 MLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGN 451

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M+ R++ +WT++I G A++G    ++ELF  MK  G+ PN V F++VL  
Sbjct: 452 IRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTA 511

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+E  ++F+SM  ++GI P +EHY  + DL GRAGRL+EA D I  MP+ P   
Sbjct: 512 CSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGS 571

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL+ACR++KN +M E  + +++E++ KN GAY+LL+NIY+ ++ W      R  ++
Sbjct: 572 VWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLR 631

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G++K P CS IEV  +V+ F AGDE+HP Y +I   +  +   ++  GYV +T+ V +
Sbjct: 632 RTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHH 691

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEE+K+  +C HSE++AI FG+I+   G  IR+ KNLRVC DCH  TK ISK+  REI
Sbjct: 692 DVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREI 751

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD +RFHHFK G CSC  YW
Sbjct: 752 VVRDNSRFHHFKNGTCSCGDYW 773



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 2/234 (0%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
            VD  RK+F+ MPE+D ++WN ++AG A+ G   E L +   M   ++K +  ++ SVL 
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLP 308

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
                  + +G+  H    R  L   V + ++L+DMY+KC  +  +   F  + ER+  +
Sbjct: 309 LIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS 368

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           W S+I G   NG  ++ L+ F  M  A ++P   +F S++  C  +  +  G++    + 
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 428

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           R  G +  +     LVD+Y + G +  A  + ++M ++    +W A++  C ++
Sbjct: 429 RN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMV-SWTAMIMGCALH 480



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 38/154 (24%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +++FD +   D+V  TAMI  CA                          
Sbjct: 445 MYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCA-------------------------- 478

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L G+A      +A+ LF  M+   ++ N V+ ++VL+AC+H G +D+  W   Y     L
Sbjct: 479 LHGHAL-----DAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEA-WK--YFNSMTL 530

Query: 121 KMTVTLG----TALVDMYSKCGNMNKAMDFFWGM 150
              +  G     A+ D+  + G + +A DF  GM
Sbjct: 531 DFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGM 564



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LG  + D+ S   +++     F  M E+++ +W ++I G A NG   ++L +   M  A 
Sbjct: 237 LGQQIKDI-SHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN 295

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           ++P+  T  SVL        + +G+E H  S+R+    E ++     L+D+Y +  R+ +
Sbjct: 296 LKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVA--SSLIDMYAKCTRVVD 353

Query: 245 ALDVINKMPMKPHAGAWGALLNAC 268
           +  V   +  +    +W +++  C
Sbjct: 354 SYRVFTLLTER-DGISWNSIIAGC 376



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
           ++F+ +     +AW +++  Y   G   ++L  F  M    +  +     SVL AC  L 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            L+ G   H YI R  L   +  G AL++MYSK   + K+
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKS 162


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/434 (46%), Positives = 291/434 (67%), Gaps = 7/434 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +K G+V+ A ++FD +  +D I+WN ++ GY      +EAL LF  M       
Sbjct: 262 ALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 321

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT----LGTALVDMYSKCGNMNKA 143
           N+V+M+S+L AC HLGA+D GRW HVYI + +LK  VT    L T+L+DMY+KCG+++ A
Sbjct: 322 NDVTMLSILPACAHLGAIDIGRWIHVYINK-KLKGVVTNVSSLQTSLIDMYAKCGDIDAA 380

Query: 144 MDFF-WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
              F   M  R++ TW ++I G AM+G    + ++FS M+  G+ P+++TFV +L  C  
Sbjct: 381 QQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSH 440

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            G+++ GR  F SM R Y I P LEHYGC++DL G +G   EA ++IN MPM+P    W 
Sbjct: 441 SGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWC 500

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           +LL AC+++ N E+GE  ++KL+++E  N G+YVLLSNIYA +  W+ V  +R ++  KG
Sbjct: 501 SLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKG 560

Query: 323 V-KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           + KK+PGCS IE+D  VHEF  GD+ HP+  EI  ML E+   L+ AG+V +T+ V+ ++
Sbjct: 561 MKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEM 620

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE +E  L  HSEK+AIAFGLIS K G  + I+KNLRVC +CH+ TK+ISK++ REII 
Sbjct: 621 EEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIA 680

Query: 442 RDRNRFHHFKEGKC 455
           RDR RF HF++G C
Sbjct: 681 RDRTRFXHFRDGVC 694



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 155/274 (56%), Gaps = 3/274 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   +KVFD     DVV  TA+I+     G ++ A+K+FDE+P +D ++WNAM
Sbjct: 133 MYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAM 192

Query: 61  LAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY + G  +EAL LF  +M + +V+ +E +MV+V+SAC    +++ GR  H +I  + 
Sbjct: 193 ISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHG 252

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               + +  AL+D+YSK G +  A + F G+  ++V +W ++IGG       +++L LF 
Sbjct: 253 FASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQ 312

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHY-GCLVDLYG 237
            M ++G  PN+VT +S+L  C  +G ++ GR  H    ++  G+   +      L+D+Y 
Sbjct: 313 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYA 372

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           + G +D A  V +          W A+++   M+
Sbjct: 373 KCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMH 406



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 117/278 (42%), Gaps = 37/278 (13%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q +  G+H  +    + ++  C      D    A  +FD + E + + WN M  G+A 
Sbjct: 8   HAQMIKTGLHNTNYAL-SKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
                 AL L+ +M    +  +  +   +L +C       +G+  H ++ +    + + +
Sbjct: 67  SSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYV 126

Query: 127 GTALVDMYSKCGNM-------------------------------NKAMDFFWGMKERNV 155
            T+L+ MY++ G +                                 A   F  +  ++V
Sbjct: 127 HTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDV 186

Query: 156 YTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
            +W ++I G    G  +++LELF  +M    VRP+E T V+V+  C     +E GR H  
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR-HVH 245

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           S   ++G    L+    L+DLY + G ++ A ++ + +
Sbjct: 246 SWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL 283


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/465 (42%), Positives = 286/465 (61%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MY + G      +VFD     DV    A+++  ++   V  A ++F E   R    + ++
Sbjct: 200 MYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVS 259

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W +++A   Q G+  EA+ LF  MQ   ++ N V++  VL A  ++ AL  GR AH +  
Sbjct: 260 WTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSL 319

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R      + +G+ALVDMY+KCG +  A   F  M  RNV +W ++IGG AM+G  E ++ 
Sbjct: 320 RKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVR 379

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M+ +  +P+ VTF  VL  C   G  EEGR +F+ M+ ++GI P +EHY C+V L 
Sbjct: 380 LFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLL 439

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG+LD+A D+IN+MP +P    WG+LL +CR++ N  + E+A+  L +LE +N G YV
Sbjct: 440 GRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYV 499

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSNIYA  K WD V  +R +MK  G+KK  GCS IE+  +VH   AGD +HP    I  
Sbjct: 500 LLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITE 559

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L  ++  ++  G+  +T+ V++D+EE+EK+D L  HSEK+A+A GLIS   G P++++K
Sbjct: 560 KLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIK 619

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH+  K IS    REI VRD NRFHHFK+GKCSC  YW
Sbjct: 620 NLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 43/314 (13%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVD----LARKMFDEMPERDPIAW 57
           Y   G     + V DG+    VV  +A+I+A A  GD +    L  +M  +  E + I W
Sbjct: 65  YLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITW 124

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N +++G  + G++R+A+     M       +   +   LSA   +G +  G   H Y+ +
Sbjct: 125 NGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK 184

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFF---------------WGMK----------- 151
              ++   + TAL+DMY KCG  ++ +  F                G+            
Sbjct: 185 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRL 244

Query: 152 ---------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
                    E NV +WTS++     NG   ++++LF  M+  G+ PN VT   VL     
Sbjct: 245 FREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFAN 304

Query: 203 VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           +  +  GR  H  S+R+ +  + ++     LVD+Y + GR+ +A  +   MP + +  +W
Sbjct: 305 IAALMHGRSAHCFSLRKGFHHDIYVG--SALVDMYAKCGRVRDARMIFEAMPYR-NVVSW 361

Query: 262 GALLNACRMYKNTE 275
            A++    M+   E
Sbjct: 362 NAMIGGYAMHGEAE 375



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 38/162 (23%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           + ++L+  Y + G    A     GM  R V  W+++I   A +G  E +  L   M+  G
Sbjct: 57  VASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDG 116

Query: 186 VRPNEVTFVSVLRGC--------CVVGLVEEGREHFDSMRREYGIEPWLEHYG------- 230
           V PN +T+  ++ G          V+ LV    E F  +    G+   L   G       
Sbjct: 117 VEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGF--LPDATGVSCALSAVGDVGDVAV 174

Query: 231 ---------------------CLVDLYGRAGRLDEALDVINK 251
                                 L+D+YG+ GR DE + V ++
Sbjct: 175 GEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDE 216


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/442 (43%), Positives = 286/442 (64%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV   +A++   A+C  +D+A  +FD +  ++ ++WNA++AG+A+       L  F  
Sbjct: 90  DEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 149

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ +       +  S+ SA   +GAL+QGRW H ++ ++  K+T  +G  ++ MY+K G+
Sbjct: 150 MQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGS 209

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A   F  M +R++ TW +++  LA  G G++++  F  +++ G++ N++TF+SVL  
Sbjct: 210 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 269

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG+ +FD M ++Y ++P ++HY   VDL GRAG L EAL  + KMPM+P A 
Sbjct: 270 CSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAA 328

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL ACRM+KN +MG+ A+  + EL+  + G  VLL NIYA +  W+    VR++MK
Sbjct: 329 VWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMK 388

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           A GVKK P CS ++++  VH F A D+THP+  +I  M  EI+ R+K AGYV NT  V+ 
Sbjct: 389 ATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLL 448

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            I E+E+E  L  HSEK+A+AF LI++  G  IRI+KN+R+C DCH   K +SKVF REI
Sbjct: 449 HINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREI 508

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHF EG CSC  YW
Sbjct: 509 VVRDTNRFHHFSEGSCSCGDYW 530



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 4/238 (1%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
           KCG V  AR +FD+MP RD ++W  ++AGYAQ     EA+ L   M     + N  +  S
Sbjct: 4   KCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTS 63

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L A    G    G   H    +      V +G+AL+DMY++C  M+ A+  F  +  +N
Sbjct: 64  LLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKN 123

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHF 213
             +W ++I G A    GE +L  F+ M++ G      T+ S+      +G +E+GR  H 
Sbjct: 124 EVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHA 183

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
             ++    +  ++ +   ++ +Y ++G + +A  V ++M  K     W  +L A   Y
Sbjct: 184 HLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQY 238



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG ++ A   F  M  R+V +WT +I G A N    +++ L   M +A  RPN  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           F S+L+     G    G E   ++  +Y  +  +     L+D+Y R  ++D A+ V +++
Sbjct: 61  FTSLLKATGACGGCSIG-EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
             K    +W AL+     +     GE    K  E++    GA
Sbjct: 120 VSKNEV-SWNALIAG---FARKADGETTLMKFAEMQRNGFGA 157



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + D+V                                WN M
Sbjct: 203 MYAKSGSMVDARKVFDRMDKRDLV-------------------------------TWNTM 231

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L   AQ G  +EA+  F  ++   ++LN+++ +SVL+AC+H G + +G+     ++   +
Sbjct: 232 LTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNV 291

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           +  +    + VD+  + G + +A+ F + M  E     W +++G   M+
Sbjct: 292 QPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 340


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/483 (41%), Positives = 309/483 (63%), Gaps = 22/483 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERD----PIA 56
           MYA+ G +    KVFD I E DVV   AM++  ++ G  + A  +F++M E +     ++
Sbjct: 57  MYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVS 116

Query: 57  WNAMLAGYAQ----C-----------GKSREALHLFHLMQIHD--VKLNEVSMVSVLSAC 99
           W+A++A +AQ    C           G++ +AL LF  M   D  VK N  ++   L AC
Sbjct: 117 WSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIAC 176

Query: 100 THLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
             L AL  GR  H YI RN      + +   L+DMY+K G+++ A   F  +K++N  +W
Sbjct: 177 ARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSW 236

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           TS++ G  M+G G+++LE+F  M++ G++P+ VT + VL  C   G++++G E F+SM +
Sbjct: 237 TSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSK 296

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           E+G+ P  EHY C+VDL GRAGRL+EA+++I  M M+P +  W ALL+ CR++ N E+GE
Sbjct: 297 EFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGE 356

Query: 279 LASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREV 338
            A+++L+EL ++N G+Y LLSNIYA ++ W  V  VR +MK  G++K PGCS ++  +  
Sbjct: 357 HAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGT 416

Query: 339 HEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVA 398
             F+  D+THP+  +I  +L  +++R+K+ GYV  T+  ++D+++EEK D L +HSEK+A
Sbjct: 417 TTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLA 476

Query: 399 IAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCK 458
           +A+G++    G PIRI KNLRVC DCH+    IS + + EII+RD +RFHHFK+G CSC 
Sbjct: 477 LAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCS 536

Query: 459 GYW 461
           GYW
Sbjct: 537 GYW 539



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 53/240 (22%)

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           D++ + VS+V+VL AC  +GA   G+  H    R+     + +G ALVDMY+KCG +++A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 144 MDFFWGMKER-----------------------------------NVYTWTSVIGGLAMN 168
              F  +KE+                                   NV +W++VI   A  
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 169 GAG---------------EKSLELFSLM-KQAG-VRPNEVTFVSVLRGCCVVGLVEEGRE 211
           G G                 +LELFS M KQ G V+PN  T    L  C  +  +  GR+
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
               + R +    +L    CL+D+Y ++G +D A  V + +  K    +W +L+    M+
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFV-SWTSLMTGYGMH 246


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/445 (44%), Positives = 294/445 (66%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E  V   ++++   AK G +  AR +F+ +PERD ++  A+++GYAQ G   EAL LF 
Sbjct: 396 YEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFR 455

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +Q   +K N V+   VL+A + L ALD G+  H ++ R+ +   V L  +L+DMYSKCG
Sbjct: 456 RLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCG 515

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVL 197
           N+  +   F  M ER V +W +++ G + +G G + L+LF+LM++   V+P+ VT ++VL
Sbjct: 516 NLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVL 575

Query: 198 RGCCVVGLVEEGREHFDSMRR-EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            GC   GL ++G   F+ M   +  +EP +EHYGC+VDL GR+GR++EA + I KMP +P
Sbjct: 576 SGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEP 635

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  WG+LL ACR++ N ++GE A ++L+E+E  N G YV+LSN+YA +  W+ V ++R 
Sbjct: 636 TAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRD 695

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  K V K PG S IE+D+ +H F A D +HPR  EI + + E+S   K  GYV + + 
Sbjct: 696 LMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSC 755

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V++D++EE+KE  L  HSEK+A++FGLI+    VPIR++KNLR+C DCH+  K ISKV+ 
Sbjct: 756 VLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYG 815

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           RE+ +RD+NRFH    GKCSC+ YW
Sbjct: 816 REVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 25/267 (9%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-- 78
           P V  +T +I    KC  +  A  +FDEMPER+ ++W AM++ Y+Q G + +AL+LF   
Sbjct: 276 PSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFAD 335

Query: 79  -------LMQIHDVKL------------NEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
                  +  I  +KL            NE +  +VL++CT       GR  H  I +  
Sbjct: 336 VKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLN 395

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  V +G++L+DMY+K G +++A   F  + ER+V + T++I G A  G  E++LELF 
Sbjct: 396 YEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFR 455

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            ++  G++ N VT+  VL     +  ++ G++ H   +R E  I  ++     L+D+Y +
Sbjct: 456 RLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSE--IPSFVVLQNSLIDMYSK 513

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALL 265
            G L  +  + + M  +    +W A+L
Sbjct: 514 CGNLTYSRRIFDTMYERT-VISWNAML 539



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 22/238 (9%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +H   +   +  ++L+ C +  A  +G+  H ++ + R   +V L T L+ +Y+KC +
Sbjct: 234 MALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDS 293

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL---MKQAGV---------- 186
           +  A + F  M ERNV +WT++I   +  G   ++L LF     +   GV          
Sbjct: 294 LGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSN 353

Query: 187 --------RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
                    PNE TF +VL  C        GR+   S+  +   E  +     L+D+Y +
Sbjct: 354 PNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQ-IHSLIIKLNYEDHVFVGSSLLDMYAK 412

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            G++ EA  V   +P +        +    ++  + E  EL  R   E    N+  Y 
Sbjct: 413 DGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYT 470



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 46/190 (24%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G L Y +++FD ++E                               R  I+WNAM
Sbjct: 510 MYSKCGNLTYSRRIFDTMYE-------------------------------RTVISWNAM 538

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L GY++ G+ RE L LF LM+    VK + V++++VLS C+H G  D+G   +++ + + 
Sbjct: 539 LVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKG--LNIFNDMSS 596

Query: 120 LKMTVTLGT----ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG----- 169
            K+ V         +VD+  + G + +A +F   M  E     W S++G   ++      
Sbjct: 597 GKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIG 656

Query: 170 --AGEKSLEL 177
             AG++ LE+
Sbjct: 657 EFAGQQLLEI 666


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/441 (45%), Positives = 285/441 (64%), Gaps = 2/441 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM-- 80
           V   T ++   A+ G VD A  +F  MP R+ ++W+AM+A YA+ GK+ EAL  F  M  
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  D   N V+MVSVL AC  L AL+QG+  H YI R  L   + + +ALV MY +CG +
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
                 F  M +R+V +W S+I    ++G G+K++++F  M   G  P  VTFVSVL  C
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLVEEG+  F++M R++GI+P +EHY C+VDL GRA RLDEA  ++  M  +P    
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WG+LL +CR++ N E+ E ASR+L  LE KN G YVLL++IYAE++ WD V  V+++++ 
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEH 516

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G++KLPG   +EV R+++ F + DE +P   +I   L +++  +K  GY+  T  V+Y+
Sbjct: 517 RGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +E EEKE  +  HSEK+A+AFGLI+  +G PIRI KNLR+C DCH  TK ISK   +EI+
Sbjct: 577 LETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEIL 636

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFH FK G CSC  YW
Sbjct: 637 VRDVNRFHRFKNGVCSCGDYW 657



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 10/261 (3%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           + D   + D    T +I   +  G VD ARK+FD+  +R    WNA+       G   E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           L L+  M    V+ +  +   VL AC      +  L +G+  H ++ R      V + T 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVR 187
           LVDMY++ G ++ A   F GM  RNV +W+++I   A NG   ++L  F  M  +     
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           PN VT VSVL+ C  +  +E+G+  H   +RR  G++  L     LV +YGR G+L+   
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRR--GLDSILPVISALVTMYGRCGKLEVGQ 340

Query: 247 DVINKMPMKPHAGAWGALLNA 267
            V ++M  +    +W +L+++
Sbjct: 341 RVFDRMHDR-DVVSWNSLISS 360



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 13/242 (5%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           I+ N ++    + GK ++A+ +       +   ++ +   ++  C H  +L      H +
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLS----QESSPSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           I  N       L T L+ MYS  G+++ A   F   ++R +Y W ++   L + G GE+ 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
           L L+  M + GV  +  T+  VL+ C    C V  + +G+E H    RR Y    ++   
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYI--M 220

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
             LVD+Y R G +D A  V   MP++ +  +W A++ AC          L + + +  ET
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMI-ACYAKNGKAFEALRTFREMMRET 278

Query: 290 KN 291
           K+
Sbjct: 279 KD 280


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 295/436 (67%), Gaps = 2/436 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           Q+++++  +KC ++ +ARK+FDE+ ER+ + W+AM++GYA+ G   EAL +F  MQ+  +
Sbjct: 130 QSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGI 189

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + +EVS+V VLSAC  +GALD G+W H YI++  + + + L TAL++MY+KCG + KA +
Sbjct: 190 EPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKARE 249

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M+ ++   W+S+I GLA++G  E +L +FS M++A  +PN VTF+ +L  C   GL
Sbjct: 250 IFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGL 309

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V +G+ ++ SM  E GIEP +EHYGC+VDL  R G +DEA D    +P  P    W  LL
Sbjct: 310 VSDGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP-TPDPVIWRTLL 367

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            A    +  +  E+ + KL+ELE      Y++L+N+YA     ++V +VR++MK  G+K 
Sbjct: 368 VAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKA 427

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           LPGC+ IEVD  VH F  GD +HP   EI+  L +++ ++ ++GY    + V++ + +EE
Sbjct: 428 LPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEE 487

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE+ L +HSE++AIA+GL+  K    IRIVKNLRVC DCH+VTK+ISK+++REIIVRDR 
Sbjct: 488 KENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRV 547

Query: 446 RFHHFKEGKCSCKGYW 461
           RFH F  G CSCK YW
Sbjct: 548 RFHKFVNGTCSCKDYW 563



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 150/288 (52%), Gaps = 13/288 (4%)

Query: 19  HEPDVVCQTAMIS------ACAKCGDVDLARKMFDEMPERDPIAWNAMLAG--YAQCGKS 70
           H P +   + +IS      A +  G+ D ARK+F ++P     A+N+++ G  Y +   S
Sbjct: 14  HVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKI-PS 72

Query: 71  REALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           +E +HLF  M        N  +M  VL AC+ + AL++G+  H  I R+    +  + ++
Sbjct: 73  KEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSS 132

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV+ YSKC  +  A   F  + ERN+  W++++ G A  G   ++L +F  M+  G+ P+
Sbjct: 133 LVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPD 192

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           EV+ V VL  C +VG ++ G+     +++   I   LE    L+++Y + G +++A ++ 
Sbjct: 193 EVSLVGVLSACAMVGALDIGKWVHAYIKKRM-IHVDLELNTALINMYAKCGCIEKAREIF 251

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYV 296
           ++M +K  + AW +++    ++   E       ++ E + K NH  ++
Sbjct: 252 DEMRVK-DSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFI 298



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 83/153 (54%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   TA+I+  AKCG ++ AR++FDEM  +D  AW++M+ G A  G + +AL++F  M+
Sbjct: 227 DLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRME 286

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K N V+ + +LSAC H G +  G+     +    ++ ++     +VD+  + G ++
Sbjct: 287 EAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLID 346

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           +A DF   +   +   W +++     N   +K+
Sbjct: 347 EAYDFALIIPTPDPVIWRTLLVAYTKNRMLQKA 379


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 288/461 (62%), Gaps = 34/461 (7%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA  G +G  +KVFD + + DV+    MI+   K GD + A K+F EMPER+  +W +M
Sbjct: 157 LYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSM 216

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GYAQCGKS+EA+ LF  M+   +  NEV++V+VL AC  +G L  GR  H +  R+  
Sbjct: 217 IGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY 276

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  + +   L+DMY KCG +  A   F  M+ER V +W+++I GLA +G  E +L LF+ 
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   GV+PN VTF+ +L  C  +G+VE+GR++F SM R+YGI P +EHYGC+VDL+ RAG
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAG 396

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA + I  MP+ P+   WGALL  C+++KN ++ E A+R L +L+  N G YV+LSN
Sbjct: 397 LLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSN 456

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYAE+  W+ V  VR++M+ +G  +                                  +
Sbjct: 457 IYAEAGRWEDVARVRKLMRDRGTWE----------------------------------K 482

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + +R+KL GYV NT+ V+ D+EE++KE  L +HSEK+A+ FGLI    G  IRI+KNLRV
Sbjct: 483 LLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRV 542

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+IS V  REI+VRDRNRFH FK G CSC  YW
Sbjct: 543 CEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 33/266 (12%)

Query: 31  SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
           S CA       A+ +F  +   +   WN  L  +A+     +A+ LF+ ++  D+  +  
Sbjct: 55  SVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHY 114

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +   VL AC+ L  +  G+  H Y+E+  L+  + L   +V +Y+ CG +  A   F  M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174

Query: 151 KERNVYT-------------------------------WTSVIGGLAMNGAGEKSLELFS 179
            +R+V T                               WTS+IGG A  G  +++++LF 
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+ AG+ PNEVT V+VL  C  +G +  GR   D   R  G E  +     L+D+Y + 
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS-GYEKNIRVCNTLIDMYVKC 293

Query: 240 GRLDEALDVINKMPMKPHAGAWGALL 265
           G L++A  + + M  +    +W A++
Sbjct: 294 GCLEDACRIFDNMEERT-VVSWSAMI 318


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/451 (44%), Positives = 292/451 (64%), Gaps = 1/451 (0%)

Query: 12  QKVFDGIHEP-DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           ++VFD +    DVV   +MI    + G + +A+K+F EMPE+D I+W  +++G  Q G+ 
Sbjct: 188 KQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGEL 247

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            +AL  F  +    ++ NE  +VS+L+A   LG L+ G+  H      R  MT +LGTAL
Sbjct: 248 EKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTAL 307

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           VDMY+KCG ++++   F  M E++ ++W  +I GLA +G G+++L LF      G  P  
Sbjct: 308 VDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVN 367

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VTF+ VL  C   GLV EG+  F  M   YGIEP +EHYGC+VDL  RAG + +A+++IN
Sbjct: 368 VTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMIN 427

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
           +MP  P    W ++L +C+++   E+GE    KL++++  ++G YV L+ I+A  + W+ 
Sbjct: 428 RMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWED 487

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V  VR++M  +   K+ G S+IE +  VH F AGD+ H R  EI  ML  +  R+  AGY
Sbjct: 488 VSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGY 547

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
            AN + V++DIEEEEKE+ + +HSE++AIAFGL+  K+G  IRI+KNLRVC DCH+V+K+
Sbjct: 548 SANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKI 607

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           IS VF REIIVRD +RFHHFK+G CSC+ YW
Sbjct: 608 ISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 36/262 (13%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVK 86
           A ++  +     D A  +++ +      A N M+  + +    R ++ L+ H+ +     
Sbjct: 71  AFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAA 130

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC--------- 137
            N+ ++  VL AC++  A+ +G     ++ +      V +  AL+ +Y  C         
Sbjct: 131 PNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQV 190

Query: 138 -----------------------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
                                  G ++ A   F  M E++V +W ++I G   NG  EK+
Sbjct: 191 FDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKA 250

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLV 233
           L+ F  + +  +RPNE   VS+L     +G +E G R H  +    + +   L     LV
Sbjct: 251 LDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLG--TALV 308

Query: 234 DLYGRAGRLDEALDVINKMPMK 255
           D+Y + G +DE+  + ++MP K
Sbjct: 309 DMYAKCGCIDESRFLFDRMPEK 330


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/457 (43%), Positives = 286/457 (62%), Gaps = 4/457 (0%)

Query: 9   GYCQKV----FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           G+C++V        ++ D     +++ +  KC  ++ A K+F+  P  D +A+ +M+  Y
Sbjct: 407 GFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAY 466

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           +Q G   EAL ++  MQ  D+K +     S+ +AC +L A +QG+  HV++ +  L   V
Sbjct: 467 SQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDV 526

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
             G +LV+MY+KCG+++ A   F  +  R + +W+++IGGLA +G G K+L+LF  M + 
Sbjct: 527 FAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKN 586

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G+ PN +T VSVL  C   GLV E R  F  M + +GI P  EHY C+VD+ GR GRLDE
Sbjct: 587 GILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDE 646

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           A+ ++ +MP +  A  WGALL A R++KN E+G  A+  L+ LE +  G ++LL+NIYA 
Sbjct: 647 AMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYAS 706

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
           +  WD V  VR+ MK   VKK PG S IE+  +V+ F  GD +HPR  EI V L ++  R
Sbjct: 707 TGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRER 766

Query: 365 LKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDC 424
           L  AGYV      ++D+E+ EKE  L  HSEK+A+AFGLI+   G PIR+ KNLRVC DC
Sbjct: 767 LTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDC 826

Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           H   K ISKV +REIIVRD NRFHHF++G CSC  YW
Sbjct: 827 HTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D     A++   AK G  + A  +F E+P+ D ++WNA++AG     K+  AL L  
Sbjct: 219 YDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLG 278

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M  + V  +  ++ S L AC  +G +  GR  H  + +  ++    +G  L+DMYSKCG
Sbjct: 279 KMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCG 338

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A   F  M  ++V  W S+I G +  G   +++ LF+ M + G+  N+ T  ++L+
Sbjct: 339 LLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK 398

Query: 199 ---GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
              G    G  E+   H  S++  Y  + ++ +   L+D YG+   L++A  V    P +
Sbjct: 399 STAGSQANGFCEQ--VHTISIKSGYQYDGYVAN--SLLDSYGKCCLLEDAAKVFEVCPAE 454

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
               A+ +++ A   Y    +GE A +  + ++ ++
Sbjct: 455 DLV-AYTSMITA---YSQYGLGEEALKMYLRMQDRD 486



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 119/262 (45%), Gaps = 41/262 (15%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM------------- 80
           +KC    +ARK+  +  E D ++W+A+++GY Q G+  EAL  ++ M             
Sbjct: 93  SKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFS 152

Query: 81  ----------------QIHDVKL-----------NEVSMVSVLSACTHLGALDQGRWAHV 113
                           QIH V L           NE S+ +VL+AC  L   + G   H 
Sbjct: 153 SVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHG 212

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
           Y+ +           AL+DMY+K G    A+  F+ + + ++ +W +VI G  ++   + 
Sbjct: 213 YLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDL 272

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           +L+L   M    V P+  T  S L+ C  +GLV+ GR+   S   +  +EP       L+
Sbjct: 273 ALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQ-LHSALMKMDMEPDSFVGVGLI 331

Query: 234 DLYGRAGRLDEALDVINKMPMK 255
           D+Y + G L +A  V + MP K
Sbjct: 332 DMYSKCGLLQDARMVFDLMPXK 353



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 40/186 (21%)

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           V++YSKC     A        E ++ +W+++I G   NG GE++L  +  M   G + NE
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 191 VTFVSVLRGCCVVGLVEEGRE-HFDSMRREY---GIEP---------------WLEHYG- 230
            TF SVL+GC +   +E G++ H  ++  E    GI P                 E+YG 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 231 -------------------CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
                               L+D+Y ++G  + A+ V  ++P KP   +W A++  C ++
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLH 267

Query: 272 KNTEMG 277
           +  ++ 
Sbjct: 268 EKNDLA 273


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 297/491 (60%), Gaps = 31/491 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISAC---------------------------- 33
           YA+ G L   ++VFD + E + V   AM++A                             
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 34  ---AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
              A+ G ++ A+ +FD MP++D ++W AMLA Y+Q G S E L LF  M      +N  
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +   VLS C  + AL+ G   H  + R    +   +G AL+ MY KCGNM  A + F  M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
           +ER+V +W ++I G A +G G+++LE+F +M+    +P+++T V VL  C   GLVE+G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
            +F SM  ++G+    EHY C++DL GRAGRL EA D++  MP +P +  WGALL A R+
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 564

Query: 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS 330
           ++N E+G  A+ K+ ELE +N G YVLLSNIYA S  W     +R +M+ +GVKK+PG S
Sbjct: 565 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 624

Query: 331 VIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTL 390
            IEV  +VH F AGD  HP   +I   L ++  R+K AGYV+ T+ V++D+EEEEKE  L
Sbjct: 625 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHML 684

Query: 391 CKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHF 450
             HSEK+A+A+G++++  G PIR++KNLRVC DCH+  K IS +  R I++RD NRFHHF
Sbjct: 685 KYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHF 744

Query: 451 KEGKCSCKGYW 461
           + G CSC  YW
Sbjct: 745 RGGSCSCGDYW 755



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 129/260 (49%), Gaps = 18/260 (6%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           L   + +FD +   D V    MIS+ A  G V LAR  FD  PE+D ++WN MLA Y + 
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+  EA  LF+     DV    +S  +++S     G + + R      +R   +  V+  
Sbjct: 176 GRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEAR---ELFDRMPGRDVVSWN 228

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
             +V  Y++ G+M +A   F     R+V+TWT+V+ G A NG  E++  +F  M +    
Sbjct: 229 I-MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER--- 284

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            N V++ +++       +++E +E F+ M     +  W      ++  Y +AG L+EA  
Sbjct: 285 -NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-NVASW----NTMLTGYAQAGMLEEAKA 338

Query: 248 VINKMPMKPHAGAWGALLNA 267
           V + MP K  A +W A+L A
Sbjct: 339 VFDTMPQK-DAVSWAAMLAA 357



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 21/303 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y+  G L     +F  I  PD      ++ A A    +  AR +FDEMP RD + +N M+
Sbjct: 79  YSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMI 138

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + +A  G    A H F L    D     VS   +L+A    G +++ R     +  +R +
Sbjct: 139 SSHANHGLVSLARHYFDLAPEKDA----VSWNGMLAAYVRNGRVEEARG----LFNSRTE 190

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V    AL+  Y + G M++A + F  M  R+V +W  ++ G A  G   ++  LF   
Sbjct: 191 WDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD-- 248

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             A VR +  T+ +V+ G    G++EE R  FD+M     +      +  +V  Y +   
Sbjct: 249 -AAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRM 301

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           +DEA ++ N MP + +  +W  +L     Y    M E A      +  K+  ++  +   
Sbjct: 302 MDEAKELFNMMPCR-NVASWNTMLTG---YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAA 357

Query: 302 YAE 304
           Y++
Sbjct: 358 YSQ 360



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 125/253 (49%), Gaps = 13/253 (5%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +++FD +   DVV    M+S  A+ GD+  AR++FD  P RD   W A++
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE-RNRL 120
           +GYAQ G   EA  +F  M     + N VS  ++++A      +D+ +     +  RN  
Sbjct: 263 SGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-- 316

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V     ++  Y++ G + +A   F  M +++  +W +++   +  G  E++L+LF  
Sbjct: 317 ---VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M + G   N   F  VL  C  +  +E G + H   +R  YG+  ++ +   L+ +Y + 
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN--ALLAMYFKC 431

Query: 240 GRLDEALDVINKM 252
           G +++A +   +M
Sbjct: 432 GNMEDARNAFEEM 444



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 21/307 (6%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  EP+V+     I+A  + G V  A ++F  MP R    +NAMLAGY+  G+   A  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  +   D      S  ++L A     +L   R      +   ++ +VT    ++  ++ 
Sbjct: 92  FRAIPRPD----NYSYNTLLHALAVSSSLADARG---LFDEMPVRDSVTYNV-MISSHAN 143

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G ++ A  +F    E++  +W  ++     NG  E++  LF+   +  V    +++ ++
Sbjct: 144 HGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV----ISWNAL 199

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           + G    G + E RE FD M     +      +  +V  Y R G + EA  + +  P++ 
Sbjct: 200 MSGYVQWGKMSEARELFDRMPGRDVVS-----WNIMVSGYARRGDMVEARRLFDAAPVR- 253

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               W A+++    Y    M E A R    +  +N  ++  +   Y + +  D    +  
Sbjct: 254 DVFTWTAVVSG---YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 317 IMKAKGV 323
           +M  + V
Sbjct: 311 MMPCRNV 317


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 297/491 (60%), Gaps = 31/491 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISAC---------------------------- 33
           YA+ G L   ++VFD + E + V   AM++A                             
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 34  ---AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
              A+ G ++ A+ +FD MP++D ++W AMLA Y+Q G S E L LF  M      +N  
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +   VLS C  + AL+ G   H  + R    +   +G AL+ MY KCGNM  A + F  M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
           +ER+V +W ++I G A +G G+++LE+F +M+    +P+++T V VL  C   GLVE+G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
            +F SM  ++G+    EHY C++DL GRAGRL EA D++  MP +P +  WGALL A R+
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 564

Query: 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS 330
           ++N E+G  A+ K+ ELE +N G YVLLSNIYA S  W     +R +M+ +GVKK+PG S
Sbjct: 565 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 624

Query: 331 VIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTL 390
            IEV  +VH F AGD  HP   +I   L ++  R+K AGYV+ T+ V++D+EEEEKE  L
Sbjct: 625 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHML 684

Query: 391 CKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHF 450
             HSEK+A+A+G++++  G PIR++KNLRVC DCH+  K IS +  R I++RD NRFHHF
Sbjct: 685 KYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHF 744

Query: 451 KEGKCSCKGYW 461
           + G CSC  YW
Sbjct: 745 RGGSCSCGDYW 755



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 18/260 (6%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           L   + +FD +   D V    MIS+ A  G V LAR  FD  PE+D ++WN MLA Y + 
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+  EA  LF+       + + +S  +++S     G + + R      +R   +  V+  
Sbjct: 176 GRVEEARGLFN----SRTEWDAISWNALMSGYVQWGKMSEAR---ELFDRMPGRDVVSWN 228

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
             +V  Y++ G+M +A   F     R+V+TWT+V+ G A NG  E++  +F  M +    
Sbjct: 229 I-MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER--- 284

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            N V++ +++       +++E +E F+ M     +  W      ++  Y +AG L+EA  
Sbjct: 285 -NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-NVASW----NTMLTGYAQAGMLEEAKA 338

Query: 248 VINKMPMKPHAGAWGALLNA 267
           V + MP K  A +W A+L A
Sbjct: 339 VFDTMPQK-DAVSWAAMLAA 357



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 125/253 (49%), Gaps = 13/253 (5%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +++FD +   DVV    M+S  A+ GD+  AR++FD  P RD   W A++
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE-RNRL 120
           +GYAQ G   EA  +F  M     + N VS  ++++A      +D+ +     +  RN  
Sbjct: 263 SGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-- 316

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V     ++  Y++ G + +A   F  M +++  +W +++   +  G  E++L+LF  
Sbjct: 317 ---VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M + G   N   F  VL  C  +  +E G + H   +R  YG+  ++ +   L+ +Y + 
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN--ALLAMYFKC 431

Query: 240 GRLDEALDVINKM 252
           G +++A +   +M
Sbjct: 432 GNMEDARNAFEEM 444



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 21/303 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y+  G L     +F  I  PD      ++ A A    +  AR +FDEMP RD + +N M+
Sbjct: 79  YSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMI 138

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + +A  G    A H F L    D     VS   +L+A    G +++ R     +  +R +
Sbjct: 139 SSHANHGLVSLARHYFDLAPEKDA----VSWNGMLAAYVRNGRVEEARG----LFNSRTE 190

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
                  AL+  Y + G M++A + F  M  R+V +W  ++ G A  G     +E   L 
Sbjct: 191 WDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG---DMVEARRLF 247

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             A VR +  T+ +V+ G    G++EE R  FD+M     +      +  +V  Y +   
Sbjct: 248 DAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRM 301

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           +DEA ++ N MP + +  +W  +L     Y    M E A      +  K+  ++  +   
Sbjct: 302 MDEAKELFNMMPCR-NVASWNTMLTG---YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAA 357

Query: 302 YAE 304
           Y++
Sbjct: 358 YSQ 360



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 131/307 (42%), Gaps = 21/307 (6%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  EP+V+     I+A  + G V  A ++F  MP R    +NAMLAGY+  G+   A  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  +   D      S  ++L A     +L   R      +   ++ +VT    ++  ++ 
Sbjct: 92  FRAIPRPD----NYSYNTLLHALAVSSSLADARG---LFDEMPVRDSVTYNV-MISSHAN 143

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G ++ A  +F    E++  +W  ++     NG  E++  LF+   +     + +++ ++
Sbjct: 144 HGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DAISWNAL 199

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           + G    G + E RE FD M     +      +  +V  Y R G + EA  + +  P++ 
Sbjct: 200 MSGYVQWGKMSEARELFDRMPGRDVVS-----WNIMVSGYARRGDMVEARRLFDAAPVR- 253

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               W A+++    Y    M E A R    +  +N  ++  +   Y + +  D    +  
Sbjct: 254 DVFTWTAVVSG---YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 317 IMKAKGV 323
           +M  + V
Sbjct: 311 MMPCRNV 317


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 296/461 (64%), Gaps = 2/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +    ++F+ +    +V    MI      G++  AR MF+ M ERD   WNAM+
Sbjct: 248 YTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMI 307

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             + + G   EAL LF  MQ   V LN  SM+SVLS C  L +LD GR  H  + R+   
Sbjct: 308 KVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFD 367

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             + + + L+ MY KCG++ +A   F     ++V  W S+I G + +G GE++L +F  M
Sbjct: 368 QDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDM 427

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +GV+P+EVTF+ VL  C   G V+EG E F++M+  Y +EP +EHY C+VDL GRAGR
Sbjct: 428 CSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGR 487

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           +DEA++++ KMPM+P A  WGALL ACR +   ++ E+A  KL +LE KN G YVLLS++
Sbjct: 488 VDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHM 547

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGD-ETHPRYNEIEVMLGE 360
           YA    W  V  +R+ +  + V K PGCS IEV+++VH F  GD ++HP  + I  ML +
Sbjct: 548 YATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEK 606

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +S  L+ AGY  + + V++D++EEEK  +L  HSE++A+A+GL+ + EG+PIR++KNLRV
Sbjct: 607 LSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRV 666

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+KV  REII+RD NRFHHFK+G CSCK +W
Sbjct: 667 CGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 15/271 (5%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +K+FD I E DVV  T MI    + G +D AR++FDEM  R+   W  M++GYA+ G+ 
Sbjct: 164 AKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRV 223

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
             A  LF +M     + NEVS  ++L   T  G + +   A    E   +K  V     +
Sbjct: 224 DVARKLFEVMP----ERNEVSWTAMLMGYTQSGRMKE---AFELFEAMPVKWIVACNEMI 276

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +  +   G M++A   F GMKER+  TW ++I      G   ++L LF+ M++ GV  N 
Sbjct: 277 LQ-FGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNF 335

Query: 191 VTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            + +SVL  C  +  ++ GR+ H   +R E+  + ++     L+ +Y + G L  A  + 
Sbjct: 336 PSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVA--SVLITMYVKCGDLVRAKGIF 393

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELA 280
           N+   K     W +++     Y    +GE A
Sbjct: 394 NRFLFK-DVVMWNSMITG---YSQHGLGEEA 420



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 22/243 (9%)

Query: 26  QTAMISACAKCGDVDLARKMFDE--MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
            T+ IS   + GD+  ARK+FD   +P+R   +WNAM++ Y +  K R+AL LF  M   
Sbjct: 22  NTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMP-- 79

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             + N VS   ++S     G +   R    V  ERN     V   T++V  Y + G + +
Sbjct: 80  --QRNTVSFNGMISGYVKNGMVADARKVFDVMPERN-----VVSWTSMVRGYVQEGMVEE 132

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   FW M  RNV +WT +IGGL      + + +LF ++ +  V    V   +++ G C 
Sbjct: 133 AEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV----VVVTNMIGGYCQ 188

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
           VG ++E RE FD M+    +  W      +V  Y + GR+D A  +   MP +    +W 
Sbjct: 189 VGRLDEARELFDEMKVR-NVFTWT----TMVSGYAKNGRVDVARKLFEVMPERNEV-SWT 242

Query: 263 ALL 265
           A+L
Sbjct: 243 AML 245



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 18/252 (7%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +FD + + + V    MIS   K G V  ARK+FD MPER+ ++W +M+ GY Q G   EA
Sbjct: 74  LFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             LF  M     + N VS   ++        +D  +     I        V + T ++  
Sbjct: 134 EKLFWEMP----RRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEK----DVVVVTNMIGG 185

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y + G +++A + F  MK RNV+TWT+++ G A NG  + + +LF +M +     NEV++
Sbjct: 186 YCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSW 241

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            ++L G    G ++E  E F++M  +     W+     ++  +G AG +  A  +   M 
Sbjct: 242 TAMLMGYTQSGRMKEAFELFEAMPVK-----WIVACNEMILQFGLAGEMHRARMMFEGMK 296

Query: 254 MKPHAGAWGALL 265
            +   G W A++
Sbjct: 297 ERDE-GTWNAMI 307


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 285/446 (63%), Gaps = 3/446 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  D +  T+++   A  GD D ARK+FDEMP RD +AWN ++  YA+  ++++AL LF 
Sbjct: 152 HLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFE 211

Query: 79  LMQIHDVK--LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            M+  D +   ++V+ + +L AC+ LGALD G     Y E +     + +  +L+ MY +
Sbjct: 212 EMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLR 271

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++KA   F G  +++V TWT++I GLA NG G  ++ +F  M ++ V P+E TF  V
Sbjct: 272 CGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGV 331

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD-VINKMPMK 255
           L  C   GLV+EG   FD MR EYG++P + HYGC+VDL GRAG LDEA + V N+M + 
Sbjct: 332 LSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVA 391

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P A  W  LL ACR++ + ++GE     L+EL+ +  G YVLL N YA    W +V  +R
Sbjct: 392 PDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIR 451

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           ++M+ +G++  PGC+ +E +  VHEF A D+ HPR  EI   L EI ++L++AGYV N +
Sbjct: 452 KLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVS 511

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
             ++D++ E KE  L  HSEK+AIAF L+   +  PIR+ KNLRVC DCH+ TKM S ++
Sbjct: 512 SELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIY 571

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            R +IVRDR RFHHF+ GKCSC  YW
Sbjct: 572 RRIVIVRDRTRFHHFQGGKCSCNDYW 597



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 34/172 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY   GC+    +VF G  +  VV  TAMIS                             
Sbjct: 268 MYLRCGCVDKAYRVFSGTPQKSVVTWTAMIS----------------------------- 298

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
             G A  G   +A+ +F  M   DV  +E +   VLSAC+H G +D+G R+  +      
Sbjct: 299 --GLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYG 356

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWG-MK-ERNVYTWTSVIGGLAMNG 169
           LK  V     +VD+  + G +++A +F    MK   +   W +++G   ++G
Sbjct: 357 LKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHG 408


>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
          Length = 639

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/381 (51%), Positives = 261/381 (68%), Gaps = 1/381 (0%)

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           LAG+   G  REAL LF  MQ   V  ++  +V VL AC  LG L+QG+W H Y++ N +
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNI 167

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++TV LGTALVDMY+KCG M  AM+ F  MKE+NV  WT++I GLAM+G G ++LELFS 
Sbjct: 168 RITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQ 227

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ GV+P+++ F+  L  C   GLV++GRE FDSM R+YGI+P +EHYGC+VDL  R G
Sbjct: 228 MERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNG 287

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+EA +++ KMPMKP A  WGAL+  CR +KN E+ E   +  +ELE    GAYVLL N
Sbjct: 288 LLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGN 347

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA S        +R +M+ KGV K PGCS +E+   +H+F  GD +HP   EI     E
Sbjct: 348 IYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDE 407

Query: 361 ISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           I  R++L  GYV +   V+ DIEEEEKE+ L +HSEK+AIAF LI+  + +PIRIVKNLR
Sbjct: 408 IDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLR 467

Query: 420 VCWDCHDVTKMISKVFNREII 440
           VC DCH VTK+ISKVF+  ++
Sbjct: 468 VCHDCHHVTKLISKVFDLTVV 488



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 2/144 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA++   AKCG++ LA ++F  M E++ +AW  M+ G A  G+  EAL LF  M+ 
Sbjct: 171 VFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMER 230

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             VK ++++ +  L ACTH G +D+GR      + +  +K  +     +VD+ ++ G +N
Sbjct: 231 LGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLN 290

Query: 142 KAMDFFWGMKER-NVYTWTSVIGG 164
           +A +    M  + +   W +++ G
Sbjct: 291 EAREMVEKMPMKPDALIWGALMAG 314


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 285/446 (63%), Gaps = 3/446 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  D +  T+++   A  GD D ARK+FDEMP RD +AWN ++  YA+  ++++AL LF 
Sbjct: 166 HLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFE 225

Query: 79  LMQIHDVK--LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            M+  D +   ++V+ + +L AC+ LGALD G     Y E +     + +  +L+ MY +
Sbjct: 226 EMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLR 285

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++KA   F G  +++V TWT++I GLA NG G  ++ +F  M ++ V P+E TF  V
Sbjct: 286 CGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGV 345

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD-VINKMPMK 255
           L  C   GLV+EG   FD MR EYG++P + HYGC+VDL GRAG LDEA + V N+M + 
Sbjct: 346 LSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVA 405

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P A  W  LL ACR++ + ++GE     L+EL+ +  G YVLL N YA    W +V  +R
Sbjct: 406 PDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIR 465

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           ++M+ +G++  PGC+ +E +  VHEF A D+ HPR  EI   L EI ++L++AGYV N +
Sbjct: 466 KLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVS 525

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
             ++D++ E KE  L  HSEK+AIAF L+   +  PIR+ KNLRVC DCH+ TKM S ++
Sbjct: 526 SELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIY 585

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            R +IVRDR RFHHF+ GKCSC  YW
Sbjct: 586 RRIVIVRDRTRFHHFQGGKCSCNDYW 611



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 34/172 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY   GC+    +VF G  +  VV  TAMIS                             
Sbjct: 282 MYLRCGCVDKAYRVFSGTPQKSVVTWTAMIS----------------------------- 312

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
             G A  G   +A+ +F  M   DV  +E +   VLSAC+H G +D+G R+  +      
Sbjct: 313 --GLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYG 370

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWG-MK-ERNVYTWTSVIGGLAMNG 169
           LK  V     +VD+  + G +++A +F    MK   +   W +++G   ++G
Sbjct: 371 LKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHG 422


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/451 (44%), Positives = 283/451 (62%), Gaps = 28/451 (6%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQ----------------------------CGKS 70
           +D A  +FD M  RD ++W+ M+ G+A+                            CG +
Sbjct: 411 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNA 470

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            E+L LF  M+   V  ++V+MV+V+ AC  LGA+ + R    YI+R + ++ V LGTA+
Sbjct: 471 NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAM 530

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +DM++KCG +  A + F  M+E+NV +W+++I     +G G K+L+LF +M ++G+ PN+
Sbjct: 531 IDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNK 590

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           +T VS+L  C   GLVEEG   F  M  +Y +   ++HY C+VDL GRAGRLDEAL +I 
Sbjct: 591 ITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIE 650

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            M ++   G WGA L ACR +K+  + E A+  L+EL+ +N G Y+LLSNIYA +  W+ 
Sbjct: 651 SMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWED 710

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V   R +M  + +KK+PG + IEVD + H+F  GD THPR  EI  ML  +  +L+L GY
Sbjct: 711 VAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGY 770

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
           V +TN V++D++EE K   L  HSEK+AIAFGLI+  E  PIRI+KNLRVC DCH   K+
Sbjct: 771 VPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKL 830

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +S +  R IIVRD NRFHHFKEG CSC  YW
Sbjct: 831 VSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 116/175 (66%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           Q A++    KC +++ AR +FD+M ERD + W  M+ GYA+CGK+ E+L LF  M+   V
Sbjct: 196 QMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 255

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             ++V+MV+V+ AC  LGA+ + R    YI+R + ++ V LGTA++DMY+KCG +  A +
Sbjct: 256 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESARE 315

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            F  M+E+NV +W+++I     +G G K+L+LF +M  +G+ P+++T  S+L  C
Sbjct: 316 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 151/298 (50%), Gaps = 36/298 (12%)

Query: 3   AELGCLGYCQKVFDGIH----EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+LG +   + + D I     + DV+  TAMI   AKCG V+ AR++FD M E++ I+W+
Sbjct: 270 AKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWS 329

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+A Y   G+ R+AL LF +M    +  +++++ S+L AC +   L Q R  H     +
Sbjct: 330 AMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVH 389

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA-----MN----- 168
            +   + +   LV  YS    ++ A   F GM  R+  +W+ ++GG A     MN     
Sbjct: 390 GMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF 449

Query: 169 ------------------GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
                             G   +SL LF  M++ GV P++V  V+V+  C  +G + + R
Sbjct: 450 RELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 509

Query: 211 EHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              D + R+++ ++  L     ++D++ + G ++ A ++ ++M  K +  +W A++ A
Sbjct: 510 TIDDYIQRKKFQLDVILG--TAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAA 564



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 25/230 (10%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +D A  +FD M  RD ++W+ M+ G+A+ G        F  +     + +  ++  V+ A
Sbjct: 129 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 188

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C  L                       L  ALVDMY KC  +  A   F  M+ER++ TW
Sbjct: 189 CRDLK---------------------NLQMALVDMYVKCREIEDARFLFDKMQERDLVTW 227

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM-R 217
           T +IGG A  G   +SL LF  M++ GV P++V  V+V+  C  +G + + R   D + R
Sbjct: 228 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 287

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +++ ++  L     ++D+Y + G ++ A ++ ++M  K +  +W A++ A
Sbjct: 288 KKFQLDVILG--TAMIDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAA 334



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 33/234 (14%)

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           FH +Q    +LN    +S L  C +L    Q R  H     + +   + +   L+  YS 
Sbjct: 73  FHFLQ----RLNPKFYISALVNCRNL---TQVRQVHAQASVHGMLENIVVANKLIYFYSY 125

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
              ++ A   F GM  R+  +W+ ++GG A  G        F  + + G RP+  T   V
Sbjct: 126 YRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFV 185

Query: 197 LRGC--------CVVGL------VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           +R C         +V +      +E+ R  FD M+     E  L  +  ++  Y   G+ 
Sbjct: 186 IRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQ-----ERDLVTWTVMIGGYAECGKA 240

Query: 243 DEALDVINKM---PMKPHAGAWGALLNAC----RMYKNTEMGELASRKLVELET 289
           +E+L +  KM    + P   A   ++ AC     M+K   + +   RK  +L+ 
Sbjct: 241 NESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV 294


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 290/442 (65%), Gaps = 5/442 (1%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPER----DPIAWNAMLAGYAQCGKSREALHLFHL 79
           VC  A I+  ++ G VD A +MF+   E+    + ++W +++AG AQ GK  EAL LF  
Sbjct: 320 VC-NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFRE 378

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ+  VK N V++ S+L AC ++ AL  GR  H +  R  L   V +G+AL+DMY+KCG 
Sbjct: 379 MQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGR 438

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N +   F  M  +N+  W S++ G +M+G  ++ + +F  + +  ++P+ ++F S+L  
Sbjct: 439 INLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  VGL +EG ++F  M  EYGI+P LEHY C+V+L GRAG+L EA D+I +MP +P + 
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSC 558

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALLN+CR+  N ++ E+A+ KL  LE +N G YVLLSNIYA    W  V ++R  M+
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKME 618

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           + G+KK PGCS I+V   V+   AGD++HP+ ++I   + EIS+ ++ +G+  N +  ++
Sbjct: 619 SLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALH 678

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EE+E+E  L  HSEK+A+ FGL++  +G P++++KNLR+C DCH V K IS    REI
Sbjct: 679 DVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREI 738

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            +RD NRFHHFK+G CSC  +W
Sbjct: 739 FIRDTNRFHHFKDGICSCGDFW 760



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 47/313 (15%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIA 56
           MY   G +G  +KVFD + + DVV  +A++ A A+ G ++   ++  EM     E + ++
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVY 114
           WN +L+G+ + G  +EA+ +F   +IH +    ++V++ SVL +      L+ GR  H Y
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQ--KIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277

Query: 115 IERNRLKMTVTLGTALVDMYSKCGN-------------------------------MNKA 143
           + +  L     + +A++DMY K G+                               ++KA
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 144 MDFFWGMKER----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ F   KE+    NV +WTS+I G A NG   ++LELF  M+ AGV+PN VT  S+L  
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  +  GR       R + ++    H G  L+D+Y + GR++ +  V N MP K + 
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNV--HVGSALIDMYAKCGRINLSQIVFNMMPTK-NL 454

Query: 259 GAWGALLNACRMY 271
             W +L+N   M+
Sbjct: 455 VCWNSLMNGFSMH 467



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
           D DL   +   +P+    ++++++    +     +++ +F  M  H +  +   + ++  
Sbjct: 68  DADL---VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFK 124

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
            C  L A   G+  H     + L M   +  ++  MY +CG M  A   F  M +++V T
Sbjct: 125 VCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVT 184

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            ++++   A  G  E+ + + S M+ +G+  N V++  +L G
Sbjct: 185 CSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSG 226



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 3/146 (2%)

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
           AH  I ++  +    +   L+  YS     N A      + +  +Y+++S+I  L     
Sbjct: 37  AHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
             +S+ +FS M   G+ P+     ++ + C  +   + G++ H  S      ++ +++  
Sbjct: 97  FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ-- 154

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMK 255
           G +  +Y R GR+ +A  V ++M  K
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDK 180


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 291/465 (62%), Gaps = 25/465 (5%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D   Q A++   ++ G V++++ +F  M +RD ++WN M+ G   CG+  +AL+L H MQ
Sbjct: 671  DKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQ 730

Query: 82   IHD------------------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
                                  K N V++++VL  C  L AL +G+  H Y  + +L M 
Sbjct: 731  RRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMD 790

Query: 124  VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
            V +G+ALVDMY+KCG +N A   F  M  RNV TW  +I    M+G GE++LELF +M  
Sbjct: 791  VAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTA 850

Query: 184  AG------VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
             G      +RPNEVT++++   C   G+V+EG   F +M+  +G+EP  +HY CLVDL G
Sbjct: 851  GGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLG 910

Query: 238  RAGRLDEALDVINKMPMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            R+GR+ EA ++IN MP   +   AW +LL ACR++++ E GE+A++ L  LE      YV
Sbjct: 911  RSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYV 970

Query: 297  LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
            L+SNIY+ +  WD+ + VR+ MK  GV+K PGCS IE   EVH+F +GD +HP+  E+  
Sbjct: 971  LMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHE 1030

Query: 357  MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
             L  +S+R++  GYV + + V++++++EEKE  LC HSE++AIAFGL++   G  IR+ K
Sbjct: 1031 YLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAK 1090

Query: 417  NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            NLRVC DCH  TK+ISK+ +REII+RD  RFHHF  G CSC  YW
Sbjct: 1091 NLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 10/282 (3%)

Query: 14  VFDGIHEP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           VF   H P   V    ++++   KCGD+  AR++FD++P+RD ++WN+M+A   +  +  
Sbjct: 356 VFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWE 415

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTAL 130
            +LHLF LM   +V     ++VSV  AC+H+ G +  G+  H Y  RN    T T   AL
Sbjct: 416 LSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYT-NNAL 474

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           V MY++ G +N A   F     +++ +W +VI  L+ N   E++L    LM   GVRP+ 
Sbjct: 475 VTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDG 534

Query: 191 VTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           VT  SVL  C  +  +  GRE H  ++R    IE        LVD+Y    +  +   V 
Sbjct: 535 VTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTA-LVDMYCNCKQPKKGRLVF 593

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           + + ++     W ALL     Y   E  + A R  VE+ +++
Sbjct: 594 DGV-VRRTVAVWNALLAG---YARNEFDDQALRLFVEMISES 631



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 23/269 (8%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDV 85
           TA++     C      R +FD +  R    WNA+LAGYA+     +AL LF  ++   + 
Sbjct: 574 TALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEF 633

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             N  +  SVL AC            H YI +        +  AL+DMYS+ G +  +  
Sbjct: 634 CPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKT 693

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ----------------AGV--R 187
            F  M +R++ +W ++I G  + G  + +L L   M++                 GV  +
Sbjct: 694 IFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFK 753

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           PN VT ++VL GC  +  + +G+E H  +++++  ++  +     LVD+Y + G L+ A 
Sbjct: 754 PNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVG--SALVDMYAKCGCLNLAS 811

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTE 275
            V ++MP++ +   W  L+ A  M+   E
Sbjct: 812 RVFDQMPIR-NVITWNVLIMAYGMHGKGE 839



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 5/197 (2%)

Query: 52  RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW- 110
           R P  W  +L         R+A+  +  M       +  +  +VL A   +  L  G+  
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 111 -AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
            AHV+   +    +V +  +LV+MY KCG++  A   F  + +R+  +W S+I  L    
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC-VVGLVEEGREHFDSMRREYGIEPWLEH 228
             E SL LF LM    V P   T VSV   C  V G V  G++      R   +  +  +
Sbjct: 413 EWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNN 472

Query: 229 YGCLVDLYGRAGRLDEA 245
              LV +Y R GR+++A
Sbjct: 473 --ALVTMYARLGRVNDA 487


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 283/437 (64%), Gaps = 1/437 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
            TA+ +   +  D++ ARK FD MPE+   +WNAM++GYAQ G +  A+ LF  M   +V
Sbjct: 351 STAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNV 410

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + N +++ S LSAC  LGAL  G+W H  I    L+  V + TAL+DMY+KCG++++A  
Sbjct: 411 RPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARR 470

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  +NV +W ++I G  ++G G ++L+L+  M  A + P   TF+SVL  C   GL
Sbjct: 471 IFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGL 530

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP-HAGAWGAL 264
           VEEG + F SM  +Y I P +EH  C+VDL GRAG+L EA ++I++ P      G WGAL
Sbjct: 531 VEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGAL 590

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC ++K++++ +LAS+KL EL+ +N G YVLLSN++   K +     VRQ  K++ + 
Sbjct: 591 LGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLV 650

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PG ++IE+  + H F AGD  HP+   I   L +++ ++  AGY   T   +YD+EEE
Sbjct: 651 KTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEE 710

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  +  HSEK+AIAFGL+S + G  IRI+KNLRVC DCH+ TK ISKV  R I+VRD 
Sbjct: 711 EKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDA 770

Query: 445 NRFHHFKEGKCSCKGYW 461
           +RFHHF++G CSC  YW
Sbjct: 771 SRFHHFRDGVCSCGDYW 787



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 2/239 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +IS  +KCGDV+ AR +FD M + D +A+NA+++GY+  G    +++LF  +    + 
Sbjct: 251 TGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLW 310

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N  ++V+++   +  G     +  H ++ ++       + TA+  ++ +  +M  A   
Sbjct: 311 PNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKA 370

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M E+ + +W ++I G A NG  E ++ LF  M +  VRPN +T  S L  C  +G +
Sbjct: 371 FDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGAL 430

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             G+     +  E  +EP +     L+D+Y + G + EA  + N M  K +  +W A++
Sbjct: 431 SLGK-WLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMI 487



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 147/342 (42%), Gaps = 55/342 (16%)

Query: 27  TAMISACAKC----GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           T + SA AK       VD ARK+FD +P  D + WN +LAG +      EA+  F  M  
Sbjct: 149 TFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVC 204

Query: 83  H-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ +  ++ SVL A   +  +  GR  H + E+  L     + T L+ +YSKCG++ 
Sbjct: 205 DGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVE 264

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV----- 196
            A   F  M++ ++  + ++I G ++NG    S+ LF+ +   G+ PN  T V++     
Sbjct: 265 SARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHS 324

Query: 197 -----LRGCCVVGLV-------------------------EEGREHFDSMRREYGIEPWL 226
                L   C+ G V                         E  R+ FD+M      E  +
Sbjct: 325 PFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMP-----EKTM 379

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRK 283
           E +  ++  Y + G  + A+ +  +M    ++P+     + L+AC       +G+   R 
Sbjct: 380 ESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRI 439

Query: 284 LVELETKNHGAYVL--LSNIYAESKNWDRVINVRQIMKAKGV 323
           + E E      YV+  L ++YA+  +      +   M  K V
Sbjct: 440 ITE-EDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV 480



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EP+V   TA+I   AKCG +  AR++F+ M  ++ ++WNAM+AGY   G+  EAL L+  
Sbjct: 446 EPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKD 505

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M    +     + +SVL AC+H G +++G +      +   +   +   T +VD+  + G
Sbjct: 506 MLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAG 565

Query: 139 NMNKAMDFFWGMKERNV--YTWTSVIGG 164
            + +A +      +  V    W +++G 
Sbjct: 566 QLKEAFELISEFPKSAVGPGVWGALLGA 593


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 289/465 (62%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G +    KVFD +   DV    A+++   K G +D A  +F+ MP R+ ++W  M
Sbjct: 215 LYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTM 274

Query: 61  LAGYAQCGKSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           ++GY+Q G +++AL LF  M   D  V+ N V+++SVL AC  L  L++GR  H    R 
Sbjct: 275 ISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRM 334

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
            L    ++  AL  MY+KCG++  A + F      E+N+  W ++I   A  G G +++ 
Sbjct: 335 GLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVS 394

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
            F  M QAG++P+++TF  +L GC   GLV+ G ++F+ M   Y I P +EHY C+ DL 
Sbjct: 395 TFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLL 454

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAGRL EA  ++ +MPM      WG+LL ACR ++N EM E A+RKL  LE +N G YV
Sbjct: 455 GRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYV 514

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSN+YAE+  W  V  +R I+K++G KK PGCS IE++ + H F  GD +HP+  EI +
Sbjct: 515 LLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYM 574

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L  +  ++K AGY  +T+ V++DI EEEKE  L  HSEK+A+AFG+++      +R+ K
Sbjct: 575 FLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTK 634

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH     IS+++ RE+IVRD NRFHHFK G CSC  YW
Sbjct: 635 NLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 133/301 (44%), Gaps = 35/301 (11%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P  +  + M++  A  GD+D +  +F+ + E   + +N+M+  YA+ G +   +  +  
Sbjct: 102 QPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFS 161

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M       +  +   VL +   L ++  G+  H  I R  L+  + + T+L+ +Y KCG 
Sbjct: 162 MHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGE 221

Query: 140 MNKAMDFF----------WG---------------------MKERNVYTWTSVIGGLAMN 168
           +N A   F          W                      M  RN+ +WT++I G + +
Sbjct: 222 INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQS 281

Query: 169 GAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
           G  +++L LF  M  + +GVRPN VT +SVL  C  +  +E GR+    +    G+    
Sbjct: 282 GLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ-IHELACRMGLNSNA 340

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPM-KPHAGAWGALLNACRMYKNTEMGELASRKLV 285
                L  +Y + G L +A +  +K+   + +  AW  ++ A   Y +        R+++
Sbjct: 341 SVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMI 400

Query: 286 E 286
           +
Sbjct: 401 Q 401


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/494 (42%), Positives = 302/494 (61%), Gaps = 33/494 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISAC--------------------------- 33
           MY   GC+ + +KVFD +H+P++V   A+I+AC                           
Sbjct: 150 MYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVM 209

Query: 34  ----AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
                K G+++ A+++F EMP RD ++W+ M+ G A  G   E+   F  +Q   +  NE
Sbjct: 210 LAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNE 269

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
           VS+  VLSAC+  G+ + G+  H ++E+      V++  AL+DMYS+CGN+  A   F G
Sbjct: 270 VSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 329

Query: 150 MKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M+E R + +WTS+I GLAM+G GE+++ LF+ M   GV P+ ++F+S+L  C   GL+EE
Sbjct: 330 MQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEE 389

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G ++F  M+R Y IEP +EHYGC+VDLYGR+G+L +A D I +MP+ P A  W  LL AC
Sbjct: 390 GEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGAC 449

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
             + N E+ E   ++L EL+  N G  VLLSN YA +  W  V ++R+ M  + +KK   
Sbjct: 450 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTA 509

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK-LAGYVANTNPVMYDIEEEEKE 387
            S++EV + +++F AG++      E    L EI  RLK  AGY       +YD+EEEEKE
Sbjct: 510 WSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKE 569

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
           D + KHSEK+A+AF L  L +G  IRIVKNLR+C DCH V K+ SKV+  EI+VRDRNRF
Sbjct: 570 DQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRF 629

Query: 448 HHFKEGKCSCKGYW 461
           H FK+G CSC+ YW
Sbjct: 630 HSFKDGSCSCRDYW 643



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 67/309 (21%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACT 100
           AR++    PE D   +N ++ GY++  +   ++ +F  +M+   V  +  S   V+ A  
Sbjct: 58  ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 117

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           +  +L  G   H    ++ L+  + +GT L+ MY  CG +  A   F  M + N+  W +
Sbjct: 118 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 177

Query: 161 VI-------------------------------GGLAMNGAGEKSLELFSLM-------- 181
           VI                                G    G  E +  +FS M        
Sbjct: 178 VITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSW 237

Query: 182 -----------------------KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
                                  ++AG+ PNEV+   VL  C   G  E G+        
Sbjct: 238 STMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKI-LHGFVE 296

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           + G    +     L+D+Y R G +  A  V   M  K    +W +++    M+     GE
Sbjct: 297 KAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GE 353

Query: 279 LASRKLVEL 287
            A R   E+
Sbjct: 354 EAVRLFNEM 362


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/461 (42%), Positives = 292/461 (63%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   Q+VF G+   D V   +MI+   + G +  + K+F+ M  RD I WN +
Sbjct: 266 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTI 325

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A           L +   M+   V  +  +M+S+L  C+ L A  QG+  H  I +  L
Sbjct: 326 IASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 385

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  V +G  L++MYSKCG++  +   F  MK ++V TWT++I    M G G+K++  F  
Sbjct: 386 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGE 445

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ AG+ P+ V FV+++  C   GLVEEG  +F  M+++Y IEP +EHY C+VDL  R+ 
Sbjct: 446 MEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSA 505

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            LD+A D I  MP+KP +  WGALL+ACRM  +TE+ E  S +++EL   + G YVL+SN
Sbjct: 506 LLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSN 565

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    WD+V ++R+ +KA+G+KK PGCS +E+  +V+ F  G +   ++ E+  +LG 
Sbjct: 566 IYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGM 625

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++  +   GY+AN   V++DI+E+EK D LC HSE++AIAFGL++ K G P++++KNLRV
Sbjct: 626 LAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRV 685

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH VTK ISK+  RE++VRD NRFH FK+G CSC  YW
Sbjct: 686 CEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 157/327 (48%), Gaps = 46/327 (14%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V D     D+    A+I    +  D+D ARK+F+EMP RD ++WN++++GY   G   E
Sbjct: 140 RVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE 199

Query: 73  ALHLFH------LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
           AL +++      +  ++  K + +++ S+L AC HLG L+ G++ H Y+  +  +   T 
Sbjct: 200 ALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 259

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-------- 178
              L++MY+KCGN+  + + F GMK ++  +W S+I     NG    SL++F        
Sbjct: 260 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI 319

Query: 179 -----------------------SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
                                  S M+  GV P+  T +S+L  C ++    +G+E    
Sbjct: 320 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 379

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           + +  G+E  +     L+++Y + G L  +  V   M  K     W AL++AC MY    
Sbjct: 380 IFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKD-VVTWTALISACGMYGE-- 435

Query: 276 MGELASRKLVELE----TKNHGAYVLL 298
            G+ A R   E+E      +H A+V +
Sbjct: 436 -GKKAVRAFGEMEAAGIVPDHVAFVAI 461



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 156/348 (44%), Gaps = 39/348 (11%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFD-EMPERDPIAWNAMLAGYAQCGKSREALH 75
           G+H   V+    +I+  A   D   +  +F    P  +   WN+++      G   EAL 
Sbjct: 43  GLHH-SVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALS 101

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           L+   Q   ++ +  +  SV++AC  L   +  +  H  +        + +G AL+DMY 
Sbjct: 102 LYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYC 161

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-----LMKQAG-VRPN 189
           +  +++KA   F  M  R+V +W S+I G   NG   ++LE++       M+     +P+
Sbjct: 162 RFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPD 221

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +T  S+L+ C  +G +E G+   D M    G E        L+++Y + G L  + +V 
Sbjct: 222 LLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVF 280

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGE-------LASRKLVELETKNHGAYVLLSNIY 302
           + M  K    +W +++N     +N +MG+       + +R ++   T      ++ S ++
Sbjct: 281 SGMKCKDSV-SWNSMINV--YIQNGKMGDSLKVFENMKARDIITWNT------IIASCVH 331

Query: 303 AESKNWDRVINVRQI--MKAKGVKK--------LPGCSVIEVDREVHE 340
           +E  N    + +R I  M+ +GV          LP CS++   R+  E
Sbjct: 332 SEDCN----LGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 375


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 289/465 (62%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G +    KVFD +   DV    A+++   K G +D A  +F+ MP R+ ++W  M
Sbjct: 178 LYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTM 237

Query: 61  LAGYAQCGKSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           ++GY+Q G +++AL LF  M   D  V+ N V+++SVL AC  L  L++GR  H    R 
Sbjct: 238 ISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRM 297

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
            L    ++  AL  MY+KCG++  A + F      E+N+  W ++I   A  G G +++ 
Sbjct: 298 GLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVS 357

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
            F  M QAG++P+++TF  +L GC   GLV+ G ++F+ M   Y I P +EHY C+ DL 
Sbjct: 358 TFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLL 417

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAGRL EA  ++ +MPM      WG+LL ACR ++N EM E A+RKL  LE +N G YV
Sbjct: 418 GRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYV 477

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSN+YAE+  W  V  +R I+K++G KK PGCS IE++ + H F  GD +HP+  EI +
Sbjct: 478 LLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYM 537

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L  +  ++K AGY  +T+ V++DI EEEKE  L  HSEK+A+AFG+++      +R+ K
Sbjct: 538 FLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTK 597

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH     IS+++ RE+IVRD NRFHHFK G CSC  YW
Sbjct: 598 NLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 41/261 (15%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+A YA  G    ++ +F+ +       +  +   VL +   L ++  G+  H  I R  
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIG------DYFTFPFVLKSSVELLSVWMGKCVHGLILRIG 164

Query: 120 LKMTVTLGTALVDMYSKCGNMN-------------------------------KAMDFFW 148
           L+  + + T+L+ +Y KCG +N                                A+  F 
Sbjct: 165 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFE 224

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLV 206
            M  RN+ +WT++I G + +G  +++L LF  M  + +GVRPN VT +SVL  C  +  +
Sbjct: 225 RMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTL 284

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM-KPHAGAWGALL 265
           E GR+    +    G+         L  +Y + G L +A +  +K+   + +  AW  ++
Sbjct: 285 ERGRQ-IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMI 343

Query: 266 NACRMYKNTEMGELASRKLVE 286
            A   Y +        R++++
Sbjct: 344 TAYASYGHGLQAVSTFREMIQ 364


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/462 (43%), Positives = 295/462 (63%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
            Y   G +G  ++VFD +    DV+    +++   + G + +AR++FDEMP RD I+W+ 
Sbjct: 190 FYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWST 249

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ GY +  +   AL +F  M    V+ N+ ++V+ LSA   LG L+ G++ H  ++R+ 
Sbjct: 250 LVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSG 309

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           + + + +G ALVDMY+KCG +  A + F GM+ R+V+ W ++I GLA +G G  ++ELF 
Sbjct: 310 MPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFE 369

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
                G+ P  VTFV VL GC   GLV EGR +F  +  +Y IEP +EHYGC+VDL GRA
Sbjct: 370 RFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRA 429

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G + EA+++I  M + P    WG +L++C+ +   ++G     KL+EL+  + G YVLLS
Sbjct: 430 GLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLS 489

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IYA++  WD V  VR++M ++G  K  G S++E   +VH+F  GD  H    +I   L 
Sbjct: 490 GIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLD 549

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
            I++RL  AGYV + + V++DI EEEK   +  HSE++AIA+G I L+ G PIRIVKNLR
Sbjct: 550 MINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLR 609

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH+ +KM++ VF REIIVRD +RFHH KEGKCSC  YW
Sbjct: 610 VCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/446 (43%), Positives = 284/446 (63%), Gaps = 1/446 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +G H+ DV   +++I   A C   D + K+FD +P RD I WN+MLAG AQ G   EAL 
Sbjct: 202 NGFHD-DVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALG 260

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M    +K   V+  S++ AC +L +L  G+  H Y+ R      V + ++L+DMY 
Sbjct: 261 LFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYC 320

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCGN++ A   F  ++  ++ +WT++I G A++G   ++L LF  M+   ++PN +TF++
Sbjct: 321 KCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLA 380

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C   GLV++G ++F+SM   YGI P LEH+  L D  GR G+L+EA + I+ M +K
Sbjct: 381 VLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIK 440

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P A  W  LL AC+++KNT + E  ++K+ +LE ++ G++++LSN Y+ S  W+   ++R
Sbjct: 441 PTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLR 500

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           + M+ KG++K P CS IEV  + H F A D++HP Y  I   L   S ++   GYV NT+
Sbjct: 501 KSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTD 560

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V  DIEEE+K   LC HSEK+AI FG+IS   G  IR++KNLRVC DCH VTK ISK+ 
Sbjct: 561 DVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIV 620

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REI++RD NRFHHFK+G CSC  +W
Sbjct: 621 GREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 23/289 (7%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           YC+      H P++     ++ +          RK+FDEMPE+D ++WN ++ G A+ G+
Sbjct: 103 YCKLPAPPSHSPEMDGSAVVLES---------VRKVFDEMPEKDVVSWNTLVLGCAESGR 153

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL L   M     K +  ++ SVL        + +G   H +  RN     V +G++
Sbjct: 154 HGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSS 213

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMY+ C   + ++  F  +  R+   W S++ G A NG+ +++L LF  M  +G++P 
Sbjct: 214 LIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPM 273

Query: 190 EVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            VTF S++  C  +  +  G++ H   +R  +    ++     L+D+Y + G +  A  +
Sbjct: 274 PVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFIS--SSLIDMYCKCGNVSIARRI 331

Query: 249 INKMPMKPHAGAWGALL----------NACRMYKNTEMGELASRKLVEL 287
            +++   P   +W A++           A  ++   E+G L    +  L
Sbjct: 332 FDRI-QSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFL 379



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 88/151 (58%), Gaps = 8/151 (5%)

Query: 15  FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74
           FDG    +V   +++I    KCG+V +AR++FD +   D ++W AM+ G+A  G +REAL
Sbjct: 305 FDG----NVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL--GTALVD 132
            LF  M++ ++K N ++ ++VL+AC+H G +D+G W +     +   +  +L    AL D
Sbjct: 361 VLFDRMELGNLKPNHITFLAVLTACSHAGLVDKG-WKYFNSMSDHYGIVPSLEHHAALAD 419

Query: 133 MYSKCGNMNKAMDFFWGMK-ERNVYTWTSVI 162
              + G + +A +F  GMK +     W++++
Sbjct: 420 TLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/440 (45%), Positives = 278/440 (63%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    ++IS   KC +VD A  MF ++  R  ++WNAM+ G+AQ G+  EAL+ F  MQ
Sbjct: 371 NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQ 430

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK +  + VSV++A   L      +W H  + RN L   V + TALVDMY+KCG + 
Sbjct: 431 ARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIM 490

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M ER+V TW ++I G   +G G+ +LELF  M++  +RPN VTF+SV+  C 
Sbjct: 491 IARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS 550

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVE G + F  M+  Y IEP ++HYG +VDL GRAGRL+EA D I +MP+KP    +
Sbjct: 551 HSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GA+L AC+++KN    E  + +L EL  ++ G +VLL+NIY  +  W++V  VR  M  +
Sbjct: 611 GAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K PGCS++E+  EVH FF+G   HP   +I   L ++  ++K AGYV +TN ++  +
Sbjct: 671 GLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GL 729

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           E++ KE  L  HSEK+AI+FGL++   G  I + KNLRVC DCH+ TK IS V  REIIV
Sbjct: 730 EDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIV 789

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK G CSC  YW
Sbjct: 790 RDMQRFHHFKNGACSCGDYW 809



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   T + +  AKC  V  ARK+FD MPERD ++WN ++AGY+Q G +R AL + +LM 
Sbjct: 169 DLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMC 228

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++K + +++VSVL A + L  +  G+  H Y  R      V + TALVDMY+KCG++ 
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLK 288

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F GM ERNV +W S+I     N   ++++ +F  M   GV+P +V+ +  L  C 
Sbjct: 289 TARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +E GR     +  E  ++  +     L+ +Y +   +D A  +  K+  +    +W
Sbjct: 349 DLGDLERGR-FIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIV-SW 406

Query: 262 GALL 265
            A++
Sbjct: 407 NAMI 410



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 132/260 (50%), Gaps = 9/260 (3%)

Query: 9   GYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           GY  +  FD +    V   TA++   AKCG +  AR +FD M ER+ ++WN+M+  Y Q 
Sbjct: 260 GYAMRAGFDSL----VNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQN 315

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
              +EA+ +F  M    VK  +VS++  L AC  LG L++GR+ H       L   V++ 
Sbjct: 316 ENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVV 375

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            +L+ MY KC  ++ A   F  ++ R + +W ++I G A NG   ++L  FS M+   V+
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVK 435

Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P+  T+VSV+     + +    +  H   MR       ++     LVD+Y + G +  A 
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVT--TALVDMYAKCGAIMIAR 493

Query: 247 DVINKMPMKPHAGAWGALLN 266
            + + M  + H   W A+++
Sbjct: 494 LIFDMMSER-HVTTWNAMID 512



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 136/262 (51%), Gaps = 4/262 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT ++S   + G VD A ++F+ + ++  + +  ML G+A+     +AL  F  M+  +V
Sbjct: 72  QTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEV 131

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           +    +   +L  C     L  G+  H  + ++   + +   T L +MY+KC  +++A  
Sbjct: 132 EPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARK 191

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++ +W +++ G + NG    +LE+ +LM +  ++P+ +T VSVL     + L
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRL 251

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  G+E H  +MR   G +  +     LVD+Y + G L  A  + + M ++ +  +W ++
Sbjct: 252 IRIGKEIHGYAMRA--GFDSLVNIATALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSM 308

Query: 265 LNACRMYKNTEMGELASRKLVE 286
           ++A    +N +   +  +K+++
Sbjct: 309 IDAYVQNENPKEAMVIFQKMLD 330



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 4/141 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +V   TA++   AKCG + +AR +FD M ER    WNAM+ GY   G  + AL LF  
Sbjct: 470 DKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEE 529

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ   ++ N V+ +SV+SAC+H G ++ G +  H+  E   ++ ++    A+VD+  + G
Sbjct: 530 MQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAG 589

Query: 139 NMNKAMDFFWGMKER---NVY 156
            +N+A DF   M  +   NVY
Sbjct: 590 RLNEAWDFIMQMPVKPAVNVY 610


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/494 (42%), Positives = 302/494 (61%), Gaps = 33/494 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISAC--------------------------- 33
           MY   GC+ + +KVFD +H+P++V   A+I+AC                           
Sbjct: 142 MYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVM 201

Query: 34  ----AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
                K G+++ A+++F EMP RD ++W+ M+ G A  G   E+   F  +Q   +  NE
Sbjct: 202 LAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNE 261

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
           VS+  VLSAC+  G+ + G+  H ++E+      V++  AL+DMYS+CGN+  A   F G
Sbjct: 262 VSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 321

Query: 150 MKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M+E R + +WTS+I GLAM+G GE+++ LF+ M   GV P+ ++F+S+L  C   GL+EE
Sbjct: 322 MQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEE 381

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G ++F  M+R Y IEP +EHYGC+VDLYGR+G+L +A D I +MP+ P A  W  LL AC
Sbjct: 382 GEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGAC 441

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
             + N E+ E   ++L EL+  N G  VLLSN YA +  W  V ++R+ M  + +KK   
Sbjct: 442 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTA 501

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK-LAGYVANTNPVMYDIEEEEKE 387
            S++EV + +++F AG++      E    L EI  RLK  AGY       +YD+EEEEKE
Sbjct: 502 WSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKE 561

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
           D + KHSEK+A+AF L  L +G  IRIVKNLR+C DCH V K+ SKV+  EI+VRDRNRF
Sbjct: 562 DQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRF 621

Query: 448 HHFKEGKCSCKGYW 461
           H FK+G CSC+ YW
Sbjct: 622 HSFKDGSCSCRDYW 635



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 67/309 (21%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACT 100
           AR++    PE D   +N ++ GY++  +   ++ +F  +M+   V  +  S   V+ A  
Sbjct: 50  ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 109

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           +  +L  G   H    ++ L+  + +GT L+ MY  CG +  A   F  M + N+  W +
Sbjct: 110 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 169

Query: 161 VI-------------------------------GGLAMNGAGEKSLELFSLM-------- 181
           VI                                G    G  E +  +FS M        
Sbjct: 170 VITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSW 229

Query: 182 -----------------------KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
                                  ++AG+ PNEV+   VL  C   G  E G+        
Sbjct: 230 STMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKI-LHGFVE 288

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           + G    +     L+D+Y R G +  A  V   M  K    +W +++    M+     GE
Sbjct: 289 KAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GE 345

Query: 279 LASRKLVEL 287
            A R   E+
Sbjct: 346 EAVRLFNEM 354


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/451 (42%), Positives = 296/451 (65%), Gaps = 2/451 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++F   H+ D +  T+M+   + CG  + A K+FDE+P++D +AWN +++   +  ++R+
Sbjct: 152 RIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRD 211

Query: 73  ALHLFHLMQ--IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           AL LF +MQ   +  + ++V+ + +L AC  L AL+ G   H YI+++       L  +L
Sbjct: 212 ALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSL 271

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + MYS+CG M+KA + F  M E+NV +W+++I GL+MNG G +++E F  M++ GV P +
Sbjct: 272 ISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGD 331

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            TF +VL  C   GLV+EG   FD MR+E+ I P + HYGC+VDL GRAG LD+A ++I 
Sbjct: 332 HTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIM 391

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            M ++P A  W  LL ACR++ +  +GE     L+EL+++  G YVLL NIY+ + NWD+
Sbjct: 392 SMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDK 451

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V  +R++MK KG+   P C+ IE++  VH+F   D +HP  ++I   L EI+++LK+AGY
Sbjct: 452 VTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGY 511

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
            A  +  ++ +E ++K   L  HSEK+AIAFG+++   G  IRI  N+R C DCH+  K 
Sbjct: 512 EAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKY 571

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           IS V+NR+++VRDR+RFHHF+EG+CSC  +W
Sbjct: 572 ISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 4/256 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
            I +P V  +    +A A   D+  +R++FD +       +NAML  Y+      E L++
Sbjct: 55  SIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYM 114

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           +  M+   V+ + +S    + +C  L +L  G   H  I  N  +    L T+++D+YS 
Sbjct: 115 YRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSH 174

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV--RPNEVTFV 194
           CG   +A   F  + +++V  W  +I  L  N     +L LF +M+      +P++VT +
Sbjct: 175 CGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCL 234

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            +L+ C  +  +E G E      +++G          L+ +Y R GR+D+A +V +KM  
Sbjct: 235 LLLQACADLNALEFG-ERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTE 293

Query: 255 KPHAGAWGALLNACRM 270
           K +  +W A+++   M
Sbjct: 294 K-NVVSWSAMISGLSM 308



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 39/176 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G +    +VFD + E +VV                               +W+AM
Sbjct: 274 MYSRCGRMDKAYEVFDKMTEKNVV-------------------------------SWSAM 302

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G +  G  REA+  F  MQ + V+  + +  +VLSAC+H G +D+G     + +R R 
Sbjct: 303 ISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGM---AFFDRMRQ 359

Query: 121 KMTVTLGT----ALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAG 171
           +  +         +VD+  + G +++A +    M+ R +   W +++G   ++G G
Sbjct: 360 EFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHG 415


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/452 (43%), Positives = 288/452 (63%), Gaps = 12/452 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   Q  ++   ++ G +D+A ++F +M +RD + WN M+ GY       +AL L H MQ
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 498

Query: 82  IHD-----------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
             +           +K N ++++++L +C  L AL +G+  H Y  +N L   V +G+AL
Sbjct: 499 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 558

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           VDMY+KCG +  +   F  + ++NV TW  +I    M+G G+++++L  +M   GV+PNE
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VTF+SV   C   G+V+EG   F  M+ +YG+EP  +HY C+VDL GRAGR+ EA  ++N
Sbjct: 619 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN 678

Query: 251 KMPMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            MP   + AGAW +LL A R++ N E+GE+A++ L++LE      YVLL+NIY+ +  WD
Sbjct: 679 MMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWD 738

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
           +   VR+ MK +GV+K PGCS IE   EVH+F AGD +HP+  ++   L  +  R++  G
Sbjct: 739 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 798

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +T+ V++++EE+EKE  LC HSEK+AIAFG+++   G  IR+ KNLRVC DCH  TK
Sbjct: 799 YVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 858

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ISK+ +REII+RD  RFH FK G CSC  YW
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +A++     C  V   R++FD M +R    WNAM+AGY+Q    +EAL LF  M+     
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401

Query: 87  L-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           L N  +M  V+ AC   GA  +    H ++ +  L     +   L+DMYS+ G ++ AM 
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-----------QAGVRPNEVTFV 194
            F  M++R++ TW ++I G   +   E +L L   M+           +  ++PN +T +
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521

Query: 195 SVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++L  C  +  + +G+E H  +++     +  +     LVD+Y + G L  +  V +++P
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRKVFDQIP 579

Query: 254 MKPHAGAWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
            K +   W  ++ A  M+ N  E  +L    +V+    N   ++ +    + S   D  +
Sbjct: 580 QK-NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 313 NVRQIMK 319
            +  +MK
Sbjct: 639 RIFYVMK 645



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 4/265 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            +++   K G +  ++ +      RD + WN +L+   Q  +  EAL     M +  V+ 
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           +E ++ SVL AC+HL  L  G+  H Y  +N  L     +G+ALVDMY  C  +      
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVGL 205
           F GM +R +  W ++I G + N   +++L LF  M++ AG+  N  T   V+  C   G 
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               +E       + G++        L+D+Y R G++D A+ +  KM  +     W  ++
Sbjct: 421 FSR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV-TWNTMI 478

Query: 266 NACRMYKNTEMGELASRKLVELETK 290
                 ++ E   L   K+  LE K
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERK 503



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 5/247 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            V     +++   KCGD     K+FD + ER+ ++WN++++      K   AL  F  M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 82  IHDVKLNEVSMVSVLSACTHLG---ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
             +V+ +  ++VSV++AC++L     L  G+  H Y  R     +  + T LV MY K G
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLG 250

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  +         R++ TW +V+  L  N    ++LE    M   GV P+E T  SVL 
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  + ++  G+E      +   ++        LVD+Y    ++     V + M      
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKI 369

Query: 259 GAWGALL 265
           G W A++
Sbjct: 370 GLWNAMI 376



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
            R P  W  +L    +    REA+  +  M +  +K +  +  ++L A   L  ++ G+ 
Sbjct: 59  SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQ 118

Query: 111 AHVYIERNRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
            H ++ +    + +VT+   LV++Y KCG+       F  + ERN  +W S+I  L    
Sbjct: 119 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 178

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE---EGREHFDSMRREYGIEPWL 226
             E +LE F  M    V P+  T VSV+  C  + + E    G++      R+  +  ++
Sbjct: 179 KWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFI 238

Query: 227 EHYGCLVDLYGRAGRL 242
                LV +YG+ G+L
Sbjct: 239 --INTLVAMYGKLGKL 252



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 49/240 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GCL   +KVFD                               ++P+++ I WN +
Sbjct: 561 MYAKCGCLQMSRKVFD-------------------------------QIPQKNVITWNVI 589

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           +  Y   G  +EA+ L  +M +  VK NEV+ +SV +AC+H G +D+G R  +V      
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY---TWTSVIGGLAMNGAGEKSLE 176
           ++ +      +VD+  + G + +A      M  R+      W+S++G   ++     +LE
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLM-NMMPRDFNKAGAWSSLLGASRIH----NNLE 704

Query: 177 LFSLMKQAGVR--PNEVTFVSVLRGC-CVVGLVEEGREHFDSMRREYGI--EP---WLEH 228
           +  +  Q  ++  PN  +   +L       GL ++  E   +M +E G+  EP   W+EH
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNM-KEQGVRKEPGCSWIEH 763


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/452 (43%), Positives = 288/452 (63%), Gaps = 12/452 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   Q  ++   ++ G +D+A ++F +M +RD + WN M+ GY       +AL L H MQ
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 498

Query: 82  IHD-----------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
             +           +K N ++++++L +C  L AL +G+  H Y  +N L   V +G+AL
Sbjct: 499 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 558

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           VDMY+KCG +  +   F  + ++NV TW  +I    M+G G+++++L  +M   GV+PNE
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VTF+SV   C   G+V+EG   F  M+ +YG+EP  +HY C+VDL GRAGR+ EA  ++N
Sbjct: 619 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN 678

Query: 251 KMPMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            MP   + AGAW +LL A R++ N E+GE+A++ L++LE      YVLL+NIY+ +  WD
Sbjct: 679 MMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWD 738

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
           +   VR+ MK +GV+K PGCS IE   EVH+F AGD +HP+  ++   L  +  R++  G
Sbjct: 739 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 798

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +T+ V++++EE+EKE  LC HSEK+AIAFG+++   G  IR+ KNLRVC DCH  TK
Sbjct: 799 YVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 858

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ISK+ +REII+RD  RFH FK G CSC  YW
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +A++     C  V   R++FD M +R    WNAM+AGY+Q    +EAL LF  M+     
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401

Query: 87  L-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           L N  +M  V+ AC   GA  +    H ++ +  L     +   L+DMYS+ G ++ AM 
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-----------QAGVRPNEVTFV 194
            F  M++R++ TW ++I G   +   E +L L   M+           +  ++PN +T +
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521

Query: 195 SVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++L  C  +  + +G+E H  +++     +  +     LVD+Y + G L  +  V +++P
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRKVFDQIP 579

Query: 254 MKPHAGAWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
            K +   W  ++ A  M+ N  E  +L    +V+    N   ++ +    + S   D  +
Sbjct: 580 QK-NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 313 NVRQIMK 319
            +  +MK
Sbjct: 639 RIFYVMK 645



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 4/265 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            +++   K G +  ++ +      RD + WN +L+   Q  +  EAL     M +  V+ 
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           +E ++ SVL AC+HL  L  G+  H Y  +N  L     +G+ALVDMY  C  +      
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVGL 205
           F GM +R +  W ++I G + N   +++L LF  M++ AG+  N  T   V+  C   G 
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               +E       + G++        L+D+Y R G++D A+ +  KM  +     W  ++
Sbjct: 421 FSR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV-TWNTMI 478

Query: 266 NACRMYKNTEMGELASRKLVELETK 290
                 ++ E   L   K+  LE K
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERK 503



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 5/247 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            V     +++   KCGD     K+FD + ER+ ++WN++++      K   AL  F  M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 82  IHDVKLNEVSMVSVLSACTHLG---ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
             +V+ +  ++VSV++AC++L     L  G+  H Y  R     +  + T LV MY K G
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLG 250

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  +         R++ TW +V+  L  N    ++LE    M   GV P+E T  SVL 
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  + ++  G+E      +   ++        LVD+Y    ++     V + M      
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKI 369

Query: 259 GAWGALL 265
           G W A++
Sbjct: 370 GLWNAMI 376



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
            R P  W  +L    +    REA+  +  M +  +K +  +  ++L A   L  ++ G+ 
Sbjct: 59  SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQ 118

Query: 111 AHVYIERNRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
            H ++ +    + +VT+   LV++Y KCG+       F  + ERN  +W S+I  L    
Sbjct: 119 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 178

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE---EGREHFDSMRREYGIEPWL 226
             E +LE F  M    V P+  T VSV+  C  + + E    G++      R+  +  ++
Sbjct: 179 KWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFI 238

Query: 227 EHYGCLVDLYGRAGRL 242
                LV +YG+ G+L
Sbjct: 239 --INTLVAMYGKLGKL 252



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 49/240 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GCL   +KVFD                               ++P+++ I WN +
Sbjct: 561 MYAKCGCLQMSRKVFD-------------------------------QIPQKNVITWNVI 589

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           +  Y   G  +EA+ L  +M +  VK NEV+ +SV +AC+H G +D+G R  +V      
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY---TWTSVIGGLAMNGAGEKSLE 176
           ++ +      +VD+  + G + +A      M  R+      W+S++G   ++     +LE
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLM-NMMPRDFNKAGAWSSLLGASRIH----NNLE 704

Query: 177 LFSLMKQAGVR--PNEVTFVSVLRGC-CVVGLVEEGREHFDSMRREYGI--EP---WLEH 228
           +  +  Q  ++  PN  +   +L       GL ++  E   +M +E G+  EP   W+EH
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNM-KEQGVRKEPGCSWIEH 763


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/439 (45%), Positives = 280/439 (63%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA +    KCG++  AR++FD+M ++D +AW AM+ GYA  G  REAL LF  MQ 
Sbjct: 207 VFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQA 266

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             V+ +  ++   LSACT LGALD GR A   ++ +       LGTAL+DMY+KCG+  +
Sbjct: 267 EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 326

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  M+++++  W ++I GL M G  + +  L   M+++GV+ N+ TF+ +L  C  
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTH 386

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            GL+++GR +F +M + Y I P +EHYGC+VDL  RAG L EA  +I+ MPM  +A   G
Sbjct: 387 TGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILG 446

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           ALL  C++++N E+ E    +L+ LE  N G YV+LSNIY+    W+    +R  MK KG
Sbjct: 447 ALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKG 506

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           V+K+P CS +E + +VHEF  GD++HP  ++I   L E+   +K  GY   T  VM+D+E
Sbjct: 507 VEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVE 566

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           +EEKE TL  HSEK+AIAF L+    G  IR+ KNLRVC DCH   K+IS++ +REIIVR
Sbjct: 567 DEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVR 626

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           D NRFH F++G CSC  YW
Sbjct: 627 DNNRFHCFRDGSCSCNDYW 645



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 3/230 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T++++  A+CG +  A+++FDEMP    ++W A++  Y   G  REA+H+      + ++
Sbjct: 110 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  + V VL+AC  +  L  G       E+  +  +V + TA VD+Y KCG M KA + 
Sbjct: 170 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 229

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M++++   W +++GG A NG   ++L+LF  M+  GVRP+       L  C  +G +
Sbjct: 230 FDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGAL 289

Query: 207 EEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           + GR+    +   E+   P L     L+D+Y + G   EA  V  +M  K
Sbjct: 290 DLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQMRKK 337



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 37/181 (20%)

Query: 21  PDVVCQTAMISACAKCGDVDLARK-----------------------------------M 45
           PD       +SAC + G +DL R+                                   +
Sbjct: 271 PDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVV 330

Query: 46  FDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105
           F +M ++D I WNAM+ G    G  + A  L   M+   VKLN+ + + +L +CTH G +
Sbjct: 331 FQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLI 390

Query: 106 DQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIG 163
             G R+ H   +   +   +     +VD+ S+ G + +A      M    N     +++G
Sbjct: 391 QDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLG 450

Query: 164 G 164
           G
Sbjct: 451 G 451


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 297/491 (60%), Gaps = 31/491 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISAC---------------------------- 33
           YA+ G L   ++VFD + E + V   AM++A                             
Sbjct: 140 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 199

Query: 34  ---AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV 90
              A+ G ++ A+ +FD MP++D ++W AMLA Y+Q G S E L LF  M      +N  
Sbjct: 200 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 259

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +   VLS C  + AL+ G   H  + R    +   +G AL+ MY KCGNM  A + F  M
Sbjct: 260 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 319

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
           +ER+V +W ++I G A +G G+++LE+F +M+    +P+++T V VL  C   GLVE+G 
Sbjct: 320 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 379

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
            +F SM  ++G+    EHY C++DL GRAGRL EA D++  MP +P +  WGALL A R+
Sbjct: 380 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 439

Query: 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS 330
           ++N E+G  A+ K+ ELE +N G YVLLSNIYA S  W     +R +M+ +GVKK+PG S
Sbjct: 440 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 499

Query: 331 VIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTL 390
            IEV  +VH F AGD  HP   +I   L ++  R+K AGYV+ T+ V++D+EEEEKE  L
Sbjct: 500 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHML 559

Query: 391 CKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHF 450
             HSEK+A+A+G++++  G PIR++KNLRVC DCH+  K IS +  R I++RD NRFHHF
Sbjct: 560 KYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHF 619

Query: 451 KEGKCSCKGYW 461
           + G CSC  YW
Sbjct: 620 RGGSCSCGDYW 630



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 18/246 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V    MIS+ A  G V LAR  FD  PE+D ++WN MLA Y + G+  EA  LF+   
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             DV    +S  +++S     G + + R      +R   +  V+    +V  Y++ G+M 
Sbjct: 65  EWDV----ISWNALMSGYVQWGKMSEAR---ELFDRMPGRDVVSWNI-MVSGYARRGDMV 116

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F     R+V+TWT+V+ G A NG  E++  +F  M +     N V++ +++    
Sbjct: 117 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYI 172

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              +++E +E F+ M     +  W      ++  Y +AG L+EA  V + MP K  A +W
Sbjct: 173 QRRMMDEAKELFNMMPCR-NVASW----NTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSW 226

Query: 262 GALLNA 267
            A+L A
Sbjct: 227 AAMLAA 232



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 125/253 (49%), Gaps = 13/253 (5%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +++FD +   DVV    M+S  A+ GD+  AR++FD  P RD   W A++
Sbjct: 78  YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 137

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE-RNRL 120
           +GYAQ G   EA  +F  M     + N VS  ++++A      +D+ +     +  RN  
Sbjct: 138 SGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-- 191

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V     ++  Y++ G + +A   F  M +++  +W +++   +  G  E++L+LF  
Sbjct: 192 ---VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 248

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M + G   N   F  VL  C  +  +E G + H   +R  YG+  ++ +   L+ +Y + 
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN--ALLAMYFKC 306

Query: 240 GRLDEALDVINKM 252
           G +++A +   +M
Sbjct: 307 GNMEDARNAFEEM 319



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 21/256 (8%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           MP RD + +N M++ +A  G    A H F L    D     VS   +L+A    G +++ 
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDA----VSWNGMLAAYVRNGRVEEA 56

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           R     +  +R +  V    AL+  Y + G M++A + F  M  R+V +W  ++ G A  
Sbjct: 57  R----GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 112

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G   ++  LF     A VR +  T+ +V+ G    G++EE R  FD+M     +      
Sbjct: 113 GDMVEARRLFD---AAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS----- 163

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           +  +V  Y +   +DEA ++ N MP + +  +W  +L     Y    M E A      + 
Sbjct: 164 WNAMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTG---YAQAGMLEEAKAVFDTMP 219

Query: 289 TKNHGAYVLLSNIYAE 304
            K+  ++  +   Y++
Sbjct: 220 QKDAVSWAAMLAAYSQ 235


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/465 (46%), Positives = 292/465 (62%), Gaps = 24/465 (5%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ V  G    DV     +I     CG +DLARK+FDEMPER  ++WN+M+    + G+
Sbjct: 155 HCQIVKHGF-SGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGE 213

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTL 126
              AL LF  MQ    + +  +M SVLSAC  LG+L  G W+HV++ RN    + M V +
Sbjct: 214 YDSALQLFRDMQ-KSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLI 272

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG- 185
             +L++MY KCG++  A   F GM++ ++ +W ++I G A +G  E+++  F  M + G 
Sbjct: 273 KNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGK 332

Query: 186 -VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            V+PN VTFV++L  C   G+V +GR++FD M REYGIEP LEHYGC++DL  RAG + E
Sbjct: 333 NVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITE 392

Query: 245 ALDVINKMPMKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKNH-------GAYV 296
           A+D++  MPMKP A  W +LL+AC +   + E+ E  +R ++     N        GAYV
Sbjct: 393 AIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNCSGAYV 452

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLS +YA +  W+ V  VR++M   G++K PGCS IE++   +EFFAGD +HP+  +I  
Sbjct: 453 LLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQ 512

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L  I  RL+    V  TN       +  KE +L  HSE++AIAFGLISL    PIRI K
Sbjct: 513 QLKVIDDRLR--SIVDATN-------DSSKEYSLRLHSERLAIAFGLISLPPQTPIRIFK 563

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLRVC DCH+VTK+ISKVFN EIIVRDR RFHHFK+G CSC  YW
Sbjct: 564 NLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 6/233 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFH-LMQIHDVKLNEVSMVS 94
            DV+ A ++FD +       WN ++   A    +  EA  L+  +++  +   ++ +   
Sbjct: 78  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPF 137

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC ++  L +G+  H  I ++     V +   L+  Y  CG ++ A   F  M ER+
Sbjct: 138 VLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERS 197

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +W S+I  L   G  + +L+LF  M Q    P+  T  SVL  C  +G +  G     
Sbjct: 198 LVSWNSMIDALVRVGEYDSALQLFRDM-QKSFEPDGYTMQSVLSACAGLGSLSLGTWSHV 256

Query: 215 SMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + R   ++  ++      L+++Y + G L  A  V   M  K    +W A++
Sbjct: 257 FLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGM-RKHDLASWNAMI 308


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/439 (45%), Positives = 280/439 (63%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA +    KCG++  AR++FD+M ++D +AW AM+ GYA  G  REAL LF  MQ 
Sbjct: 254 VFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQA 313

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             V+ +  ++   LSACT LGALD GR A   ++ +       LGTAL+DMY+KCG+  +
Sbjct: 314 EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 373

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  M+++++  W ++I GL M G  + +  L   M+++GV+ N+ TF+ +L  C  
Sbjct: 374 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTH 433

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            GL+++GR +F +M + Y I P +EHYGC+VDL  RAG L EA  +I+ MPM  +A   G
Sbjct: 434 TGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILG 493

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           ALL  C++++N E+ E    +L+ LE  N G YV+LSNIY+    W+    +R  MK KG
Sbjct: 494 ALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKG 553

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           V+K+P CS +E + +VHEF  GD++HP  ++I   L E+   +K  GY   T  VM+D+E
Sbjct: 554 VEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVE 613

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           +EEKE TL  HSEK+AIAF L+    G  IR+ KNLRVC DCH   K+IS++ +REIIVR
Sbjct: 614 DEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVR 673

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           D NRFH F++G CSC  YW
Sbjct: 674 DNNRFHCFRDGSCSCNDYW 692



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 3/230 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T++++  A+CG +  A+++FDEMP    ++W A++  Y   G  REA+H+      + ++
Sbjct: 157 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 216

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  + V VL+AC  +  L  G       E+  +  +V + TA VD+Y KCG M KA + 
Sbjct: 217 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 276

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M++++   W +++GG A NG   ++L+LF  M+  GVRP+       L  C  +G +
Sbjct: 277 FDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGAL 336

Query: 207 EEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           + GR+    +   E+   P L     L+D+Y + G   EA  V  +M  K
Sbjct: 337 DLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQMRKK 384



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 37/181 (20%)

Query: 21  PDVVCQTAMISACAKCGDVDLARK-----------------------------------M 45
           PD       +SAC + G +DL R+                                   +
Sbjct: 318 PDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVV 377

Query: 46  FDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105
           F +M ++D I WNAM+ G    G  + A  L   M+   VKLN+ + + +L +CTH G +
Sbjct: 378 FQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLI 437

Query: 106 DQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIG 163
             G R+ H   +   +   +     +VD+ S+ G + +A      M    N     +++G
Sbjct: 438 QDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLG 497

Query: 164 G 164
           G
Sbjct: 498 G 498


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/443 (43%), Positives = 289/443 (65%), Gaps = 2/443 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           HE DV   +A++   A+CG +D+A  +FD++  ++ ++WNA+++G+A+ G    AL  F 
Sbjct: 184 HE-DVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFA 242

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M  +  +    +  SV S+   LGAL+QG+W H ++ ++R KMT   G  L+DMY+K G
Sbjct: 243 EMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSG 302

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +M  A   F  + ++++ TW +++   A  G G++++  F  M+++G+  N+VTF+ +L 
Sbjct: 303 SMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILT 362

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG+ +F+ M +EY +EP ++H+  +V L GRAG L+ AL  I KMP++P A
Sbjct: 363 ACSHGGLVKEGKRYFE-MMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTA 421

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL ACRM+KN ++G+ A+  + EL+  + G  VLL NIYA +  WD    VR+IM
Sbjct: 422 AVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIM 481

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K  GVKK P CS +E++  VH F A D+THPR  EI  M G+IS++++  GYV + + V+
Sbjct: 482 KTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVL 541

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++++E+E  L  HSEK+A+AF LI +  G  IRI+KN+R+C DCH   K ISKVF RE
Sbjct: 542 LRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGRE 601

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD NRFHHF  G CSC  YW
Sbjct: 602 IVVRDTNRFHHFSNGSCSCADYW 624



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     ++I    KCG V  ARK+FDEM  +D ++W +++AGYAQ     EA+ L   M 
Sbjct: 85  DAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGML 144

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K N  +  S+L A         GR  H    +      V +G+AL+DMY++CG M+
Sbjct: 145 KGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMD 204

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  +N  +W ++I G A  G GE +L  F+ M + G      T+ SV     
Sbjct: 205 MATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIA 264

Query: 202 VVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +G +E+G+  H   ++    +  +  +   L+D+Y ++G + +A  V +++  K     
Sbjct: 265 RLGALEQGKWVHAHMIKSRQKMTAFAGN--TLLDMYAKSGSMIDARKVFDRVDDKDLV-T 321

Query: 261 WGALLNACRMY 271
           W  +L A   Y
Sbjct: 322 WNTMLTAFAQY 332



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 4/174 (2%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           + ++AC     L+  R  H ++  +R      L  +L+ +Y KCG++ +A   F  M+ +
Sbjct: 56  TFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRK 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           ++ +WTS+I G A N   E+++ L   M +   +PN  TF S+L+          GR+ H
Sbjct: 116 DMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIH 175

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             +++ ++  + ++     L+D+Y R G +D A  V +K+  K +  +W AL++
Sbjct: 176 ALAVKCDWHEDVYVG--SALLDMYARCGMMDMATAVFDKLDSK-NGVSWNALIS 226



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + D+V    M++A                            
Sbjct: 297 MYAKSGSMIDARKVFDRVDDKDLVTWNTMLTA---------------------------- 328

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
              +AQ G  +EA+  F  M+   + LN+V+ + +L+AC+H G + +G+     ++   L
Sbjct: 329 ---FAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDL 385

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           +  +     +V +  + G +N A+ F + M  E     W +++    M+
Sbjct: 386 EPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMH 434


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/453 (42%), Positives = 299/453 (66%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  +  G+ +   VC T +I+   +C DVD AR +FD + E   + +NAM+ GYA+  +
Sbjct: 152 HCLSMKLGLDDNVYVCPT-LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  MQ   +K NE++++SVLS+C  LG+LD G+W H Y +++     V + TA
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTA 270

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DM++KCG+++ A+  F  M+ ++   W+++I   A +G  EKS+ +F  M+   V+P+
Sbjct: 271 LIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPD 330

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+TF+ +L  C   G VEEGR++F  M  ++GI P ++HYG +VDL  RAG L++A + I
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFI 390

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           +K+P+ P    W  LL AC  + N ++ E  S ++ EL+  + G YV+LSN+YA +K W+
Sbjct: 391 DKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWE 450

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V ++R++MK +   K+PGCS IEV+  VHEFF+GD       ++   L E+ + LKL+G
Sbjct: 451 YVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSG 510

Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV +T+ V++ ++ ++EKE TL  HSEK+AI FGL++   G  IR+VKNLRVC DCH+  
Sbjct: 511 YVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAA 570

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+IS +F R++++RD  RFHHF++GKCSC  +W
Sbjct: 571 KLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 19  HEPDVVCQTAMISACAKC---GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           H  DV     +I+ C +      +  AR +F+ M E D + +N+M  GY++     E   
Sbjct: 56  HIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFS 115

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  +    +  +  +  S+L AC    AL++GR  H    +  L   V +   L++MY+
Sbjct: 116 LFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYT 175

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           +C +++ A   F  + E  V  + ++I G A      ++L LF  M+   ++PNE+T +S
Sbjct: 176 ECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLS 235

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C ++G ++ G+       +++    +++    L+D++ + G LD+A+ +  KM  K
Sbjct: 236 VLSSCALLGSLDLGK-WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK 294

Query: 256 PHAGAWGALLNA 267
               AW A++ A
Sbjct: 295 -DTQAWSAMIVA 305


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 296/467 (63%), Gaps = 8/467 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISA------CAKCGDVDLARKMFDEMPERDP 54
           MYA    +   Q VFD +   D V    +I+A      C K   + +  +M  E    + 
Sbjct: 223 MYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEK--GLSVFGRMMSEGVGLNY 280

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
            +WNA++ G  Q G++ +AL +   MQ    K N++++ SVL ACT+L +L  G+  H Y
Sbjct: 281 ASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGY 340

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           I R+     +T  TALV MY+KCG++  +   F  M +R+  +W ++I   +M+G GE++
Sbjct: 341 IFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEA 400

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           L LF  M  +GVRPN VTF  VL GC    LV+EG   FDSM R++ +EP  +H+ C+VD
Sbjct: 401 LLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVD 460

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           +  RAGRL+EA + I KMP++P AGAWGALL  CR+YKN E+G +A+ +L E+E+ N G 
Sbjct: 461 VLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGN 520

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEI 354
           YVLLSNI   +K W      R++M+ +GV K PGCS I+V   VH F  GD+++ + +EI
Sbjct: 521 YVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEI 580

Query: 355 EVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
              L  +  ++++AGY+ NT+ V+ D+++EEKE+ LC HSEK+A+AFG+++L     IR+
Sbjct: 581 YRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRV 640

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            KNLR+C DCH+  K ++K+   +IIVRD  RFHHF++G CSC+ +W
Sbjct: 641 FKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 143/300 (47%), Gaps = 37/300 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV+   A+I    KC   + AR +F+ MP RD I+W +M + Y  CG  REAL  F  M 
Sbjct: 112 DVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMG 171

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           ++  + N V++ S+L ACT L  L  GR  H ++ RN +   V + +ALV+MY+ C ++ 
Sbjct: 172 LNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIR 231

Query: 142 KAMDFFWGMKER-----------------------------------NVYTWTSVIGGLA 166
           +A   F  M  R                                   N  +W +VIGG  
Sbjct: 232 QAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCM 291

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG  EK+LE+ S M+ +G +PN++T  SVL  C  +  +  G++    + R +  +  L
Sbjct: 292 QNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQD-L 350

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
                LV +Y + G L+ +  V + M  K    +W  ++ A  M+ N E   L  R++V+
Sbjct: 351 TTTTALVFMYAKCGDLELSRRVFSMMT-KRDTVSWNTMIIATSMHGNGEEALLLFREMVD 409



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKL 87
            I   +  GD+  AR +FD++P+ D   W  +++   + G+S EA+  ++  +  + V+ 
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +++ ++SV  AC  L  +   +  H    R      V LG AL+DMY KC     A   F
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
            GM  R+V +WTS+       G   ++L  F  M   G RPN VT  S+L  C  +  ++
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            GRE H   +R   G   ++     LV++Y     + +A  V + M  +    +W  L+ 
Sbjct: 197 SGREVHGFVVRNGMGGNVFVS--SALVNMYASCLSIRQAQLVFDSMSRRDTV-SWNVLIT 253

Query: 267 ACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           A  + K  E G  +  R + E    N+ ++  +     ++   ++ + V   M+  G K 
Sbjct: 254 AYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKP 313

Query: 326 --------LPGCSVIEVDR 336
                   LP C+ +E  R
Sbjct: 314 NQITITSVLPACTNLESLR 332



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L    + +YS  G++ +A   F  + + ++ TWT +I  L  +G   ++++ ++  +   
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 186 -VRPNEVTFVSVLRGCCVV-GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            V P+++  +SV + C  +  ++   R H D++R  +  +  L +   L+D+YG+    +
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGN--ALIDMYGKCRCSE 130

Query: 244 EALDVINKMPMK 255
            A  V   MP +
Sbjct: 131 GARLVFEGMPFR 142


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/502 (41%), Positives = 298/502 (59%), Gaps = 45/502 (8%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLA------------------ 42
           MY + GCL   +KV D +   DVV   +M++  A+ G  D A                  
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 43  -------------------RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
                                MF+ M +++ I+WN M+A Y       EA+ LF  M+  
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            +K + V++ S+L AC  L AL  GR  H YIE+  L+  + L  AL+DMY+KCG + +A
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEA 360

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
            D F  M+ R+V +WTS++     +G G  ++ LF+ M  +G  P+ + FVSVL  C   
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GL+++GR +F  M  +YGI P +EH+ C+VDL+GRAG ++EA   I +MPM+P+   WGA
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL+ACR++   ++G +A+  L +L  K  G YVLLSNIYA++  W  V+NVR  MK  G+
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           KK+PG S +E++ +VH F AGD+ HP+    Y E++V++G    ++K  GY+  T   ++
Sbjct: 541 KKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVG----KMKELGYIPQTESALH 596

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E E+KE  L  HSEK+AI F +++ K+G PIRI KNLRVC DCH   K+ISK+ +R I
Sbjct: 597 DVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNI 656

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHF  G CSC  YW
Sbjct: 657 IVRDCNRFHHFSNGICSCGDYW 678



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 35/241 (14%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+++   KCG +  ARK+ D+MP RD ++WN+M+AGYAQ G+  +AL +   M   ++ 
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +M S LS      +L+  ++ H   ER                             
Sbjct: 236 HDAGTMAS-LSPVVCYTSLENVQYIHNMFER----------------------------- 265

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
              M ++N+ +W  +I     N    +++ LF  M++ G++P+ VT  S+L  C  +  +
Sbjct: 266 ---MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSAL 322

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             GR     + +   + P L     L+D+Y + G L+EA DV +KM ++    +W ++++
Sbjct: 323 FLGRRLHKYIEKG-NLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMS 380

Query: 267 A 267
           A
Sbjct: 381 A 381



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 20/280 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      ++ A +  G+  +AR +FD   E++ + +N M+  Y       EAL +F +M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 +  +   VL AC+ L  L  G   H  I +  L   + +G ALV MY KCG + 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A      M  R+V +W S++ G A +G  + +LE+   M    +  +  T  S+    C
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 202 VVGL--VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKP 256
              L  V+     F+ M ++  I      +  ++ +Y      +EA+ +  +M    MKP
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKP 304

Query: 257 HAGAWGALLNAC----------RMYKNTEMGELASRKLVE 286
            A    +LL AC          R++K  E G L    L+E
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLE 344


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 278/440 (63%), Gaps = 3/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+     +++   +CG VD ARK+FD MPE+  I WNAM++GYAQ G +   L L+  M+
Sbjct: 193 DLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKME 252

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  + V++V VLS+C HLGA   GR     IE +       L  AL++MY++CGN+ 
Sbjct: 253 FTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLV 312

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA   F GM E+NV +WT++I G  M+G GE +++LF  M  +   P+   FVSVL  C 
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACS 372

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL E+G  +F +M R+YG++P  EHY C+VDL GRAGRL+EA  +I  M ++P    W
Sbjct: 373 HAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVW 432

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL AC++++N E+ ELA  K++E E  N G YVLLSNI++E+ N + ++ VR +M+ +
Sbjct: 433 GALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRER 492

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            +KK PGCS +E    +H F AGD THP+  EI  ML  +   +K  G    +N    + 
Sbjct: 493 KLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRG---GSNDNDQES 549

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
             EE    +  HSEK+AIAFGLI+ + G  I ++KNLRVC DCH   K++S++ +R+++V
Sbjct: 550 RNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVV 609

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK G CSCK YW
Sbjct: 610 RDATRFHHFKNGVCSCKDYW 629



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 144/281 (51%), Gaps = 7/281 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA--WNAMLAGYAQCGKSREALHLF 77
           EP+   QT++IS   KC  +  ARK+FDE      +A  +NA++AGY+   +  +A+ LF
Sbjct: 88  EPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLF 147

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M+   V +N V+M+ ++  C     L  G   H    R  L   +++G  L+ MY +C
Sbjct: 148 RQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRC 207

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+++ A   F GM E+ + TW ++I G A NG     L+L+  M+  G+ P+ VT V VL
Sbjct: 208 GSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVL 267

Query: 198 RGCCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +G    GRE    +    +G  P+L++   L+++Y R G L +A  + + M  K 
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGMTEK- 324

Query: 257 HAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYV 296
           +  +W A++    M+   E+  +L    +   E  +  A+V
Sbjct: 325 NVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFV 365



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 10/217 (4%)

Query: 56  AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           +WNA L   A+    +EAL+L+  M       N  +      +C  L     G   H ++
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF-WGMKERNVYT-WTSVIGGLAMNGAGEK 173
            +   +    + T+L+ MY KC  +  A   F      RN+   + ++I G ++N     
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG---REHFDSMRREYGIEPWLEHYG 230
           ++ LF  M++ GV  N VT + ++  C   G +  G     H  S+R  +G++  L    
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVR--FGLDGDLSVGN 198

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           CL+ +Y R G +D A  + + MP K     W A+++ 
Sbjct: 199 CLLTMYVRCGSVDFARKLFDGMPEKGLI-TWNAMISG 234



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 33/165 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L   + +FDG+ E +V+  TA+I+     G  +LA ++FDEM   D +   A 
Sbjct: 304 MYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGA- 362

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
                                         + VSVLSAC+H G  ++G +    +ER+  
Sbjct: 363 ------------------------------AFVSVLSACSHAGLTEKGLYYFTAMERDYG 392

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIG 163
           L+      + +VD+  + G + +A      M  E +   W +++G
Sbjct: 393 LQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLG 437


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/452 (43%), Positives = 288/452 (63%), Gaps = 12/452 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   Q  ++   ++ G +D+A ++F +M +RD + WN M+ GY       +AL L H MQ
Sbjct: 352 DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 411

Query: 82  IHD-----------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
             +           +K N ++++++L +C  L AL +G+  H Y  +N L   V +G+AL
Sbjct: 412 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 471

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           VDMY+KCG +  +   F  + ++NV TW  +I    M+G G+++++L  +M   GV+PNE
Sbjct: 472 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 531

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VTF+SV   C   G+V+EG   F  M+ +YG+EP  +HY C+VDL GRAGR+ EA  ++N
Sbjct: 532 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN 591

Query: 251 KMPMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            MP   + AGAW +LL A R++ N E+GE+A++ L++LE      YVLL+NIY+ +  WD
Sbjct: 592 MMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWD 651

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
           +   VR+ MK +GV+K PGCS IE   EVH+F AGD +HP+  ++   L  +  R++  G
Sbjct: 652 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 711

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +T+ V++++EE+EKE  LC HSEK+AIAFG+++   G  IR+ KNLRVC DCH  TK
Sbjct: 712 YVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 771

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ISK+ +REII+RD  RFH FK G CSC  YW
Sbjct: 772 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +G  + +    +A++     C  V   R++FD M +R    WNAM+AGY+Q    +EAL 
Sbjct: 244 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 303

Query: 76  LFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
           LF  M+     L N  +M  V+ AC   GA  +    H ++ +  L     +   L+DMY
Sbjct: 304 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMY 363

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-----------Q 183
           S+ G ++ AM  F  M++R++ TW ++I G   +   E +L L   M+           +
Sbjct: 364 SRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASR 423

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
             ++PN +T +++L  C  +  + +G+E H  +++     +  +     LVD+Y + G L
Sbjct: 424 VSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAKCGCL 481

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
             +  V +++P K +   W  ++ A  M+ N +
Sbjct: 482 QMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQ 513



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 4/266 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +++   K G +  ++ +      RD + WN +L+   Q  +  EAL     M +  V+
Sbjct: 153 NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 212

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMD 145
            +E ++ SVL AC+HL  L  G+  H Y  +N  L     +G+ALVDMY  C  +     
Sbjct: 213 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 272

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVG 204
            F GM +R +  W ++I G + N   +++L LF  M++ AG+  N  T   V+  C   G
Sbjct: 273 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 332

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
                +E       + G++        L+D+Y R G++D A+ +  KM  +     W  +
Sbjct: 333 AFSR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV-TWNTM 390

Query: 265 LNACRMYKNTEMGELASRKLVELETK 290
           +      ++ E   L   K+  LE K
Sbjct: 391 ITGYVFSEHHEDALLLLHKMQNLERK 416



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 5/246 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V     +++   KCGD     K+FD + ER+ ++WN++++      K   AL  F  M  
Sbjct: 46  VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 105

Query: 83  HDVKLNEVSMVSVLSACTHLG---ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            +V+ +  ++VSV++AC++L     L  G+  H Y  R     +  + T LV MY K G 
Sbjct: 106 ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGK 164

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  +         R++ TW +V+  L  N    ++LE    M   GV P+E T  SVL  
Sbjct: 165 LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 224

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  + ++  G+E      +   ++        LVD+Y    ++     V + M      G
Sbjct: 225 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIG 283

Query: 260 AWGALL 265
            W A++
Sbjct: 284 LWNAMI 289



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 49/240 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GCL   +KVFD                               ++P+++ I WN +
Sbjct: 474 MYAKCGCLQMSRKVFD-------------------------------QIPQKNVITWNVI 502

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           +  Y   G  +EA+ L  +M +  VK NEV+ +SV +AC+H G +D+G R  +V      
Sbjct: 503 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 562

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY---TWTSVIGGLAMNGAGEKSLE 176
           ++ +      +VD+  + G + +A      M  R+      W+S++G   ++     +LE
Sbjct: 563 VEPSSDHYACVVDLLGRAGRIKEAYQLM-NMMPRDFNKAGAWSSLLGASRIH----NNLE 617

Query: 177 LFSLMKQAGVR--PNEVTFVSVLRGC-CVVGLVEEGREHFDSMRREYGI--EP---WLEH 228
           +  +  Q  ++  PN  +   +L       GL ++  E   +M +E G+  EP   W+EH
Sbjct: 618 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNM-KEQGVRKEPGCSWIEH 676



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM-TVTLGTALVDMYSKCG 138
           M +  +K +  +  ++L A   L  ++ G+  H ++ +    + +VT+   LV++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +       F  + ERN  +W S+I  L      E +LE F  M    V P+  T VSV+ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 199 GCCVVGLVEE---GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            C  + + E    G++      R+  +  ++     LV +YG+ G+L
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKL 165


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/461 (40%), Positives = 280/461 (60%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   ++VF  +   +VV  T+ +S   KCGD+  A K+F EMP R+ ++WN M
Sbjct: 408 MYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLM 467

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ G   +   L   M+    + + V+++++L AC  L  L++G+  H    +  L
Sbjct: 468 IAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGL 527

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +    + T+L+ MYSKCG + +A   F  M  R+   W +++ G   +G G ++++LF  
Sbjct: 528 ESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKR 587

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +  V PNE+T  +V+  C   GLV+EGRE F  M+ ++ + P  +HYGC+VDL GRAG
Sbjct: 588 MLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAG 647

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           RL EA + I  MP +P    W ALL AC+ + N ++ E A+  ++ELE      Y+ LSN
Sbjct: 648 RLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSN 707

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA++  WD    VR++M  +G+KK  G S IE+D  +H F A D  HP  + I   L  
Sbjct: 708 IYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELET 767

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +++ +K AGY  +   V++D+++ +KE  LC HSEK+AIA+GL+    G PIRI+KNLRV
Sbjct: 768 LTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRV 827

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  TK ISK+  REI+ RD NRFH+F  G CSC  +W
Sbjct: 828 CGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 175/312 (56%), Gaps = 14/312 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV   TA+I+  +KCG++ +A ++F +M ER+ ++W A++   AQ  K  EA  L+  
Sbjct: 189 ETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQ 248

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    +  N V+ VS+L++C    AL++GR  H +I    L+  + +  AL+ MY KC +
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS-----LELFSLMKQAGVRPNEVTFV 194
           + +A + F  M +R+V +W+++I G A +G  +K       +L   M++ GV PN+VTF+
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           S+LR C   G +E+GR+    + +  G E        + ++Y + G + EA  V +KM  
Sbjct: 369 SILRACTAHGALEQGRQIHAELSK-VGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMAN 427

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLV--ELETKNHGAYVLLSNIYAESKNWDRVI 312
           K +  AW + L+   MY   + G+L+S + V  E+ T+N  ++ L+   YA++ +  +V 
Sbjct: 428 K-NVVAWTSFLS---MY--IKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF 481

Query: 313 NVRQIMKAKGVK 324
            +   MKA+G +
Sbjct: 482 ELLSSMKAEGFQ 493



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 137/258 (53%), Gaps = 4/258 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    ++I+  +K  DV  A ++F  M  RD + W++M+A YA      +A   F  
Sbjct: 88  EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 147

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   +++ N ++ +S+L AC +   L++GR  H  ++   ++  V + TAL+ MYSKCG 
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGE 207

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A + F  M ERNV +WT++I   A +    ++ EL+  M QAG+ PN VTFVS+L  
Sbjct: 208 ISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C     +  GR    S   E G+E  +     L+ +Y +   + EA ++ ++M  K    
Sbjct: 268 CNTPEALNRGR-RIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVI 325

Query: 260 AWGALLN--ACRMYKNTE 275
           +W A++   A   YK+ E
Sbjct: 326 SWSAMIAGYAQSGYKDKE 343



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 119/236 (50%), Gaps = 3/236 (1%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G+ REA+ L  +++   + +N  +   V+  C      + G+  H  ++   +++ + 
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LG +L++ YSK  ++  A   F  M  R+V TW+S+I   A N    K+ + F  M  A 
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           + PN +TF+S+L+ C    ++E+GR+   ++ +  G+E  +     L+ +Y + G +  A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVATALITMYSKCGEISVA 211

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSN 300
            +V +KM  + +  +W A++ A   ++   E  EL  + L    + N   +V L N
Sbjct: 212 CEVFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLN 266


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/502 (41%), Positives = 298/502 (59%), Gaps = 45/502 (8%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLA------------------ 42
           MY + GCL   +KV D +   DVV   +M++  A+ G  D A                  
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 43  -------------------RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
                                MF+ M +++ I+WN M+A Y       EA+ LF  M+  
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            +K + V++ S+L AC  L AL  GR  H YIE+  L+  + L  AL+DMY+KCG + +A
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEA 360

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
            D F  M+ R+V +WTS++     +G G  ++ LF+ M  +G  P+ + FVSVL  C   
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GL+++GR +F  M  +YGI P +EH+ C+VDL+GRAG ++EA   I +MPM+P+   WGA
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL+ACR++   ++G +A+  L +L  K  G YVLLSNIYA++  W  V+NVR  MK  G+
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           KK+PG S +E++ +VH F AGD+ HP+    Y E++V++G    ++K  GY+  T   ++
Sbjct: 541 KKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVG----KMKELGYIPQTESALH 596

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E E+KE  L  HSEK+AI F +++ K+G PIRI KNLRVC DCH   K+ISK+ +R I
Sbjct: 597 DVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNI 656

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHF  G CSC  YW
Sbjct: 657 IVRDCNRFHHFSNGICSCGDYW 678



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 35/241 (14%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            A+++   KCG +  ARK+ D+MP RD ++WN+M+AGYAQ G+  +AL +   M   ++ 
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +M S LS      +L+  ++ H   ER                             
Sbjct: 236 HDAGTMAS-LSPVVCYTSLENVQYIHNMFER----------------------------- 265

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
              M ++N+ +W  +I     N    +++ LF  M++ G++P+ VT  S+L  C  +  +
Sbjct: 266 ---MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSAL 322

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             GR     + +   ++P L     L+D+Y + G L+EA DV +KM ++    +W ++++
Sbjct: 323 FLGRRLHKYIEKG-NLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMS 380

Query: 267 A 267
           A
Sbjct: 381 A 381



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 20/280 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      ++ A +  G+  +AR +FD   E++ + +N M+  Y       EAL +F +M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 +  +   VL AC+ L  L  G   H  I +  L   + +G ALV MY KCG + 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A      M  R+V +W S++ G A +G  + +LE+   M    +  +  T  S+    C
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 202 VVGL--VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKP 256
              L  V+     F+ M ++  I      +  ++ +Y      +EA+ +  +M    MKP
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKP 304

Query: 257 HAGAWGALLNAC----------RMYKNTEMGELASRKLVE 286
            A    +LL AC          R++K  E G L    L+E
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLE 344


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/439 (45%), Positives = 282/439 (64%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA +    KCG++  AR++FD+M  +D +AW AM+ GYA  G  REAL LF  MQ 
Sbjct: 207 VFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQA 266

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K +  ++   LSACT LGALD GR A   ++ +       LGTAL+DMY+KCG+  +
Sbjct: 267 EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 326

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  M+++++  W ++I GL M G  + +  L   M+++GV+ N+ TF+ +L  C  
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTH 386

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            GL+++GR +F +M + Y I P +EHYGC+VDL  RAG L EA  +++ MPM  +A   G
Sbjct: 387 TGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILG 446

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           ALL  C++++NTE+ E   ++L+ LE  N G YV+LSNIY+    W+    +R  MKAKG
Sbjct: 447 ALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKG 506

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           V+K+P CS +E + +VHEF  GD++HP  ++I   L E+   +K  GY   T  VM+D+E
Sbjct: 507 VEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVE 566

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           +EEKE TL  HSEK+AIAF L+    G  IR+ KNLRVC DCH   K++S++ +REIIVR
Sbjct: 567 DEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVR 626

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           D NRFH F++G CSC  YW
Sbjct: 627 DNNRFHCFRDGSCSCNDYW 645



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 3/230 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T+++S  AKCG +  A+++FDEMP    + W A++  Y   G  REA+H+      + ++
Sbjct: 110 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  + V VL+AC  +  L  G       E+  +  +V + TA VD+Y KCG M KA + 
Sbjct: 170 PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 229

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M+ ++   W +++GG A NG   ++L+LF  M+  G++P+       L  C  +G +
Sbjct: 230 FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 289

Query: 207 EEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           + GR+    +   E+   P L     L+D+Y + G   EA  V  +M  K
Sbjct: 290 DLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQMRKK 337


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/463 (44%), Positives = 290/463 (62%), Gaps = 7/463 (1%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG L    K+F      D +  T ++   + C +   A K+FDE+P+RD ++WN +++ Y
Sbjct: 130 LGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCY 189

Query: 65  AQCGKSREALHLFHLMQIHDV----KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
            +  ++R+ L LF  M+ +DV    K + V+ +  L AC +LGALD G+  H +I+ N L
Sbjct: 190 LRNKRTRDVLVLFDKMK-NDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGL 248

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L   LV MYS+CG+M+KA + F  M+ERNV +WT++I GLAMNG G++++E F+ 
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNE 308

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR-EYGIEPWLEHYGCLVDLYGRA 239
           M + G+ P E T   +L  C   GLV+EG   FD MR  E+ I+P L HYGC+VDL GRA
Sbjct: 309 MLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRA 368

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
             LD+A  +I  M MKP +  W  LL ACR++ N E+GE     L+E + +  G YVLL 
Sbjct: 369 RLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLL 428

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N Y+    W++V  +R +MK K ++  PGCS IE+   VHEF   D +HPR  EI  ML 
Sbjct: 429 NTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLA 488

Query: 360 EISRRLKLAGYVANTNPVMYDIE-EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI+++LK+AGYVA     +++++ EEEK   L  HSEK+AIAFG++       IR+ KNL
Sbjct: 489 EINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNL 548

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R C DCH+  K +S V++R +IVRDR+RFHHFK G CSC  +W
Sbjct: 549 RTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 6/237 (2%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVL 96
           D++ + ++F +         N M+  ++      E   LF  ++ +     N +S    L
Sbjct: 61  DINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFAL 120

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
             C   G L  G   H  I  +       L T L+D+YS C N   A   F  + +R+  
Sbjct: 121 KCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTV 180

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQ---AGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +W  +I     N      L LF  MK      V+P+ VT +  L+ C  +G ++ G++  
Sbjct: 181 SWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVH 240

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           D +  E G+   L     LV +Y R G +D+A +V N+M  + +  +W A+++   M
Sbjct: 241 DFI-DENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRER-NVVSWTAMISGLAM 295



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 34/175 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G +    +VF+ + E +VV  TAMIS                             
Sbjct: 261 MYSRCGSMDKAYEVFNRMRERNVVSWTAMIS----------------------------- 291

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             G A  G  +EA+  F+ M    +   E ++  +LSAC+H G +D+G      +     
Sbjct: 292 --GLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEF 349

Query: 121 KMTVTLG--TALVDMYSKCGNMNKAMDFFWGMKERNVYT-WTSVIGGLAMNGAGE 172
           K+   L     +VD+  +   ++KA      M+ +   T W +++G   ++G  E
Sbjct: 350 KIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVE 404


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/461 (42%), Positives = 290/461 (62%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +    ++F  +    V     MI      G+V  AR +FD+M E+D   W+A++
Sbjct: 243 YTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALI 302

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y + G   EAL LF LMQ   V+ N  S++S+LS C  L +LD GR  H  + R+   
Sbjct: 303 KIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFD 362

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + + + + L+ MY KCG++      F     +++  W S+I G A +G GEK+LE+F  M
Sbjct: 363 LDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEM 422

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +G  P+E+TF+ VL  C   G V+EG E F+SM+ +Y ++   EHY C+VDL GRAG+
Sbjct: 423 FSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGK 482

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L+EA+++I  MP++  A  WGALL+ACR +KN ++ E+A++KL++LE  + G Y+LLSN+
Sbjct: 483 LNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNL 542

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF-AGDETHPRYNEIEVMLGE 360
           YA    W  V  +R+ M+A+ V K PGCS IEVD +VH F   G  +HP +  I   L +
Sbjct: 543 YASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEK 602

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L+ AGY  + + VM+D++EE+K  +L  HSEK+A+A+GL+ +  G PIR++KNLRV
Sbjct: 603 LGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRV 662

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I++V  REII+RD NRFHHFK+G CSC+ +W
Sbjct: 663 CGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 23/280 (8%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            QK+FD + E + +    ++S   K G +  ARK+FD+MPER+ ++W +M+ GY Q G  
Sbjct: 66  AQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLI 125

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EA  LF  M     + N VS   +L      G +D+ R     I        V   T +
Sbjct: 126 DEAELLFWRMP----EKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK----DVVASTNM 177

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +      G +++A + F  M +RNV  WTS+I G AMN   + + +LF +M       NE
Sbjct: 178 IGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NE 233

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VT+ ++L+G    G + E  E F +M     ++P     G ++  +G  G + +A  V +
Sbjct: 234 VTWTAMLKGYTRSGRINEAAELFKAM----PVKPVAACNGMIMG-FGLNGEVGKARWVFD 288

Query: 251 KMPMKPHAGAWGALLNACRMY--KNTEMGELASRKLVELE 288
           +M  K   G W AL+   ++Y  K  E+  LA   L++ E
Sbjct: 289 QMKEKDD-GTWSALI---KIYERKGFELEALALFSLMQRE 324



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 11/253 (4%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           E G +   +++FD I   DVV  T MI      G +  AR++FDEMP+R+ +AW +M++G
Sbjct: 152 EDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISG 211

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YA   K   A  LF +M       NEV+  ++L   T  G +++   A ++  +      
Sbjct: 212 YAMNNKVDVARKLFEVMP----DKNEVTWTAMLKGYTRSGRINEA--AELF--KAMPVKP 263

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V     ++  +   G + KA   F  MKE++  TW+++I      G   ++L LFSLM++
Sbjct: 264 VAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQR 323

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            GVRPN  + +S+L  C  +  ++ GR+ H   +R  + ++ ++     L+ +Y + G L
Sbjct: 324 EGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVS--SVLITMYIKCGDL 381

Query: 243 DEALDVINKMPMK 255
                V ++   K
Sbjct: 382 VTGKRVFDRFSSK 394



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 155/324 (47%), Gaps = 23/324 (7%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           +A LG +   + +FD +    V    A+++          A+K+FD+MPER+ I+WN ++
Sbjct: 26  FARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLV 85

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRL 120
           +GY + G   EA  +F  M   +V    VS  S++      G +D+       + E+N +
Sbjct: 86  SGYVKNGMISEARKVFDKMPERNV----VSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV 141

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
             TV LG  + D     G +++A   F  +  ++V   T++IGGL   G   ++ E+F  
Sbjct: 142 SWTVMLGGLIED-----GRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDE 196

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M Q  V    V + S++ G  +   V+  R+ F+ M  +  +      +  ++  Y R+G
Sbjct: 197 MPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMPDKNEVT-----WTAMLKGYTRSG 247

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           R++EA ++   MP+KP A   G ++       N E+G+ A     +++ K+ G +  L  
Sbjct: 248 RINEAAELFKAMPVKPVAACNGMIMG---FGLNGEVGK-ARWVFDQMKEKDDGTWSALIK 303

Query: 301 IYAESKNWDRVINVRQIMKAKGVK 324
           IY         + +  +M+ +GV+
Sbjct: 304 IYERKGFELEALALFSLMQREGVR 327



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R+    +  +    +  +++ G +++A + F  ++ + V +W +++ G   N    ++ +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M +     N +++  ++ G    G++ E R+ FD M  E  +  W      +V  Y
Sbjct: 69  LFDKMPER----NTISWNGLVSGYVKNGMISEARKVFDKM-PERNVVSWT----SMVRGY 119

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + G +DEA  +  +MP K +  +W  +L
Sbjct: 120 VQEGLIDEAELLFWRMPEK-NVVSWTVML 147


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/461 (43%), Positives = 295/461 (63%), Gaps = 8/461 (1%)

Query: 9   GYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           G C++V   I    ++ DVV  T +I + A  G ++ A K+F+EMP RD ++WN+M++ Y
Sbjct: 518 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCY 577

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            Q G   EAL ++  M+I +V  +  ++VS+LS+C H+GAL  G   H +    RL   +
Sbjct: 578 CQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENI 637

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            +G AL+DMY+KCG++  A+  F  M +R+V+TW S+I G  ++G G++++  F  M  A
Sbjct: 638 FVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMA 697

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           GVRPN +TF+ +L GC   GLV+EG ++F  M  E+ ++P ++HYGC+VDL+GRAG+L E
Sbjct: 698 GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKE 757

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           AL+VI   P +     W  LL +C++++N E+GE+A R LV+L +   G  VLLS IYAE
Sbjct: 758 ALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAE 817

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
           +K+   V  +R++++++G+K  PG S IEV  +VH F   D++HP   EI   L E+  R
Sbjct: 818 AKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHR 877

Query: 365 LKLAGYVANTNPVMYDIEEEEK----EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
             L GY    + ++   E   +    E +   HSEK+AIA+GL    EG  + IVKNLRV
Sbjct: 878 ASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRV 937

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+ TK +SK F+REIIVRDR RFHHF+ G CSCK +W
Sbjct: 938 CRDCHNFTKFVSKAFDREIIVRDRVRFHHFRGGHCSCKEFW 978



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 11/255 (4%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK--SREAL 74
           G H P +  +     A +  G +  A+ +F  +      AWN+M+ G++Q       +A+
Sbjct: 426 GPHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAI 485

Query: 75  HLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             + H++     + +  +   +L AC       + R  H +I R      V L T L+  
Sbjct: 486 VFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRS 545

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+  G +  A   F  M  R++ +W S+I      G  E++L+++  M+ + V  +  T 
Sbjct: 546 YAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTL 605

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDVIN 250
           VS+L  C  VG +  G +    M R  G    +E+      L+D+Y + G L  AL + N
Sbjct: 606 VSLLSSCAHVGALHMGVQ----MHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFN 661

Query: 251 KMPMKPHAGAWGALL 265
            MP K     W +++
Sbjct: 662 SMP-KRDVFTWNSMI 675


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/440 (45%), Positives = 282/440 (64%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
             V   TA +    KCG++  AR++FD+M  +D +AW AM+ GYA  G  REAL LF  MQ
Sbjct: 661  SVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQ 720

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +K +  ++   LSACT LGALD GR A   ++ +       LGTAL+DMY+KCG+  
Sbjct: 721  AEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTV 780

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +A   F  M+++++  W ++I GL M G  + +  L   M+++GV+ N+ TF+ +L  C 
Sbjct: 781  EAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCT 840

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GL+++GR +F +M + Y I P +EHYGC+VDL  RAG L EA  +++ MPM  +A   
Sbjct: 841  HTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVIL 900

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            GALL  C++++NTE+ E   ++L+ LE  N G YV+LSNIY+    W+    +R  MKAK
Sbjct: 901  GALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAK 960

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            GV+K+P CS +E + +VHEF  GD++HP  ++I   L E+   +K  GY   T  VM+D+
Sbjct: 961  GVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDV 1020

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            E+EEKE TL  HSEK+AIAF L+    G  IR+ KNLRVC DCH   K++S++ +REIIV
Sbjct: 1021 EDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1080

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD NRFH F++G CSC  YW
Sbjct: 1081 RDNNRFHCFRDGSCSCNDYW 1100



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 3/230 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T+++S  AKCG +  A+++FDEMP    + W A++  Y   G  REA+H+      + ++
Sbjct: 565 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 624

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  + V VL+AC  +  L  G       E+  +  +V + TA VD+Y KCG M KA + 
Sbjct: 625 PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 684

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M+ ++   W +++GG A NG   ++L+LF  M+  G++P+       L  C  +G +
Sbjct: 685 FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 744

Query: 207 EEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           + GR+    +   E+   P L     L+D+Y + G   EA  V  +M  K
Sbjct: 745 DLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQMRKK 792


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 279/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV   +++I   A C   D + K+FD +P RD I WN++LAG AQ G   EAL +F  
Sbjct: 202 DSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRR 261

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+   V+  S++  C +L +L  G+  H Y+     +  V + ++L+DMY KCG 
Sbjct: 262 MLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGE 321

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  M   +V +WT++I G A++G   ++L LF  M+    +PN +TF++VL  
Sbjct: 322 ISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTA 381

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV++G ++F SM   YGI P LEH+  L D  GRAG LDEA + I+KM +KP A 
Sbjct: 382 CSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTAS 441

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL ACR++KNT + E  ++K++ELE ++ G++V+LSN+Y+ S  W+   ++R+ M+
Sbjct: 442 VWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMR 501

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+KK P CS IEV  ++H F A D +HP Y+ I   L   S ++   G+V NT  V  
Sbjct: 502 KKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQ 561

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DIEEE K   LC HSEK+AI FG+IS   G  IR++KNLRVC DCH VTK ISK+ +REI
Sbjct: 562 DIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREI 621

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFHHFK+G CSC  +W
Sbjct: 622 VVRDANRFHHFKDGNCSCGDFW 643



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           RK+FDEM ERD ++WN ++ G A+ G+  EAL     M     + +  ++ +VL      
Sbjct: 124 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
             + +G   H +  RN     V +G++L+DMY+ C   + ++  F  +  R+   W S++
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLL 243

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222
            G A NG+ E++L +F  M QAGVRP  VTF S++  C  +  +  G++   +     G 
Sbjct: 244 AGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQ-LHAYVICGGF 302

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           E  +     L+D+Y + G +  A  + +KM   P   +W A++
Sbjct: 303 EDNVFISSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMI 344



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 85/149 (57%), Gaps = 4/149 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  E +V   +++I    KCG++ +A  +FD+M   D ++W AM+ GYA  G +REAL L
Sbjct: 300 GGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVL 359

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMY 134
           F  M++ + K N ++ ++VL+AC+H G +D+G W +     N   +  TL    AL D  
Sbjct: 360 FERMELGNAKPNHITFLAVLTACSHAGLVDKG-WKYFKSMSNHYGIVPTLEHFAALADTL 418

Query: 135 SKCGNMNKAMDFFWGMK-ERNVYTWTSVI 162
            + G +++A +F   M+ +     W++++
Sbjct: 419 GRAGELDEAYNFISKMQIKPTASVWSTLL 447



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 25/252 (9%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVLSACTHLG----------- 103
           W   +   A  G   +A+ LF  M+      + V  S+ + L +C  LG           
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 104 ALDQGRWAHVYIERNRLKMTV--------TLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           A+  G +A  +     L +          + G A+VD+             F  M ER+V
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFD 214
            +W +++ G A  G   ++L     M + G RP+  T  +VL        V+ G E H  
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274
           + R  +  + ++     L+D+Y    R D ++ V + +P++ H   W +LL  C    + 
Sbjct: 196 AFRNGFDSDVFVG--SSLIDMYANCTRTDYSVKVFDNLPVRDHI-LWNSLLAGCAQNGSV 252

Query: 275 EMGELASRKLVE 286
           E      R++++
Sbjct: 253 EEALGIFRRMLQ 264


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/461 (43%), Positives = 294/461 (63%), Gaps = 8/461 (1%)

Query: 9   GYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           G C++V   I    ++ DVV  T +I + A  G ++ A K+F+EMP RD ++WN+M++ Y
Sbjct: 125 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCY 184

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            Q G   EAL ++  M+I +V  +  ++VS+LS+C H+GAL  G   H +    RL   +
Sbjct: 185 CQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENI 244

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            +G AL+DMY+KCG++  A+  F  M +R+V+TW S+I G  ++G G++++  F  M  A
Sbjct: 245 FVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMA 304

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           GVRPN +TF+ +L GC   GLV+EG ++F  M  E+ ++P ++HYGC+VDL+GRAG+L E
Sbjct: 305 GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKE 364

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           AL+VI   P +     W  LL +C++++N E+GE+A R LV+L +   G  VLLS IYAE
Sbjct: 365 ALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAE 424

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
           +K+   V  +R++++++G+K  PG S IEV  +VH F   D++HP   EI   L E+  R
Sbjct: 425 AKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHR 484

Query: 365 LKLAGYVANTNPVMYDIEEEEK----EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
             L GY    + ++   E   +    E +   HSEK+AIA+GL    EG  + IVKNLRV
Sbjct: 485 ASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRV 544

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+ TK +S  F+REIIVRDR RFHHFK G CSCK +W
Sbjct: 545 CRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 11/253 (4%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK--SREALHL 76
           H P +  +     A +  G +  A+ +F  +      AWN+M+ G++Q       +A+  
Sbjct: 35  HNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVF 94

Query: 77  F-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           + H++     + +  +   +L AC       + R  H +I R      V L T L+  Y+
Sbjct: 95  YNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYA 154

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
             G +  A   F  M  R++ +W S+I      G  E++L+++  M+ + V  +  T VS
Sbjct: 155 GNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVS 214

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDVINKM 252
           +L  C  VG +  G +    M R  G    +E+      L+D+Y + G L  AL + N M
Sbjct: 215 LLSSCAHVGALHMGVQ----MHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSM 270

Query: 253 PMKPHAGAWGALL 265
           P K     W +++
Sbjct: 271 P-KRDVFTWNSMI 282


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/440 (45%), Positives = 282/440 (64%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
             V   TA +    KCG++  AR++FD+M  +D +AW AM+ GYA  G  REAL LF  MQ
Sbjct: 685  SVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQ 744

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +K +  ++   LSACT LGALD GR A   ++ +       LGTAL+DMY+KCG+  
Sbjct: 745  AEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTV 804

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +A   F  M+++++  W ++I GL M G  + +  L   M+++GV+ N+ TF+ +L  C 
Sbjct: 805  EAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCT 864

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GL+++GR +F +M + Y I P +EHYGC+VDL  RAG L EA  +++ MPM  +A   
Sbjct: 865  HTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVIL 924

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            GALL  C++++NTE+ E   ++L+ LE  N G YV+LSNIY+    W+    +R  MKAK
Sbjct: 925  GALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAK 984

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            GV+K+P CS +E + +VHEF  GD++HP  ++I   L E+   +K  GY   T  VM+D+
Sbjct: 985  GVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDV 1044

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            E+EEKE TL  HSEK+AIAF L+    G  IR+ KNLRVC DCH   K++S++ +REIIV
Sbjct: 1045 EDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1104

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD NRFH F++G CSC  YW
Sbjct: 1105 RDNNRFHCFRDGSCSCNDYW 1124



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 3/230 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T+++S  AKCG +  A+++FDEMP    + W A++  Y   G  REA+H+      + ++
Sbjct: 589 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 648

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  + V VL+AC  +  L  G       E+  +  +V + TA VD+Y KCG M KA + 
Sbjct: 649 PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 708

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M+ ++   W +++GG A NG   ++L+LF  M+  G++P+       L  C  +G +
Sbjct: 709 FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 768

Query: 207 EEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           + GR+    +   E+   P L     L+D+Y + G   EA  V  +M  K
Sbjct: 769 DLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQMRKK 816


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/466 (42%), Positives = 286/466 (61%), Gaps = 7/466 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNA 59
           Y+   CL      F G  E D++   A+I   +KC     AR +FD++P  ER+ + W  
Sbjct: 388 YSLKNCLLTLDNDFGGEDE-DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 446

Query: 60  MLAGYAQCGKSREALHLFHLM--QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           M+ G+AQ G S +AL LF  M  + + V  N  ++  +L AC HL A+  G+  H Y+ R
Sbjct: 447 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 506

Query: 118 NRL--KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           +         +   L++MYSKCG+++ A   F  M +++  +WTS++ G  M+G G ++L
Sbjct: 507 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 566

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           ++F  M++AG  P+++TF+ VL  C   G+V++G  +FDSM  +YG+ P  EHY   +DL
Sbjct: 567 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDL 626

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             R GRLD+A   +  MPM+P A  W ALL+ACR++ N E+ E A  KLVE+  +N G+Y
Sbjct: 627 LARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSY 686

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
            L+SNIYA +  W  V  +R +MK  G+KK PGCS ++  +    FF GD +HP   +I 
Sbjct: 687 TLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIY 746

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            +L  +  R+K  GYV  TN  ++D++EEEK + L +HSEK+A+A+GL++   G PIRI 
Sbjct: 747 ALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRIT 806

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH     ISK+ + EI+VRD +RFHHFK G CSC GYW
Sbjct: 807 KNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 146/290 (50%), Gaps = 22/290 (7%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
           YA+ G +    KVF+ +   DVV   AM++  ++ G+   A ++F  M +     D + W
Sbjct: 272 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 331

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
            A++AGY+Q G S EAL++F  M       N V+++SVLSAC  LGA  QG   H Y  +
Sbjct: 332 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 391

Query: 118 N-RLKMTVTLG---------TALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGL 165
           N  L +    G          AL+DMYSKC +   A   F    ++ERNV TWT +IGG 
Sbjct: 392 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 451

Query: 166 AMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMR-REYG 221
           A  G    +L+LF  M  +  GV PN  T   +L  C  +  +  G++ H   +R  +Y 
Sbjct: 452 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD 511

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
              +     CL+++Y + G +D A  V + M  K  A +W +++    M+
Sbjct: 512 SSAYFVA-NCLINMYSKCGDVDTARHVFDSMSQKS-AISWTSMMTGYGMH 559



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 62/342 (18%)

Query: 11  CQKVFDGI-----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLA 62
           C   F G+      E +V    A+++  ++CG ++ A  +FDE+ +R   D I+WN++++
Sbjct: 135 CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVS 194

Query: 63  GYAQCGKSREALHLFHLMQ--IHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIE 116
            + +   +  AL LF  M   +H+   NE    +S+V++L AC  L A+ Q +  H    
Sbjct: 195 AHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAI 254

Query: 117 RNRLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMD 145
           RN   + V +G AL+D Y+KC                               GN   A +
Sbjct: 255 RNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFE 314

Query: 146 FFWGMKERNV----YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            F  M++ N+     TWT+VI G +  G   ++L +F  M  +G  PN VT +SVL  C 
Sbjct: 315 LFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACA 374

Query: 202 VVGLVEEGRE-HFDSMR-------REYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM 252
            +G   +G E H  S++        ++G E   L  Y  L+D+Y +      A  + + +
Sbjct: 375 SLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDI 434

Query: 253 PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           P++  +   W  ++     Y ++     A +  VE+ ++ +G
Sbjct: 435 PLEERNVVTWTVMIGGHAQYGDSND---ALKLFVEMISEPYG 473



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 120/249 (48%), Gaps = 13/249 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++++   CG  D A  + + +     + WN ++  + + G+   A+++   M     +
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L+  ++  VL AC  L +   G   H  I  N  +  V +  ALV MYS+CG++ +A   
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 147 FWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLM------KQAGVRPNEVTFVSVL 197
           F  + +R   +V +W S++     +     +L+LFS M      K    R + ++ V++L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +  V + +E H +++R    ++ ++ +   L+D Y + G ++ A+ V N M  K 
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVFNMMEFK- 291

Query: 257 HAGAWGALL 265
              +W A++
Sbjct: 292 DVVSWNAMV 300


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/466 (42%), Positives = 286/466 (61%), Gaps = 7/466 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNA 59
           Y+   CL      F G  E D++   A+I   +KC     AR +FD++P  ER+ + W  
Sbjct: 281 YSLKNCLLTLDNDFGGEDE-DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 339

Query: 60  MLAGYAQCGKSREALHLFHLM--QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           M+ G+AQ G S +AL LF  M  + + V  N  ++  +L AC HL A+  G+  H Y+ R
Sbjct: 340 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 399

Query: 118 NRL--KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           +         +   L++MYSKCG+++ A   F  M +++  +WTS++ G  M+G G ++L
Sbjct: 400 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 459

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           ++F  M++AG  P+++TF+ VL  C   G+V++G  +FDSM  +YG+ P  EHY   +DL
Sbjct: 460 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDL 519

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             R GRLD+A   +  MPM+P A  W ALL+ACR++ N E+ E A  KLVE+  +N G+Y
Sbjct: 520 LARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSY 579

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
            L+SNIYA +  W  V  +R +MK  G+KK PGCS ++  +    FF GD +HP   +I 
Sbjct: 580 TLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIY 639

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            +L  +  R+K  GYV  TN  ++D++EEEK + L +HSEK+A+A+GL++   G PIRI 
Sbjct: 640 ALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRIT 699

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH     ISK+ + EI+VRD +RFHHFK G CSC GYW
Sbjct: 700 KNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 146/290 (50%), Gaps = 22/290 (7%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
           YA+ G +    KVF+ +   DVV   AM++  ++ G+   A ++F  M +     D + W
Sbjct: 165 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 224

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
            A++AGY+Q G S EAL++F  M       N V+++SVLSAC  LGA  QG   H Y  +
Sbjct: 225 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 284

Query: 118 N-RLKMTVTLG---------TALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGL 165
           N  L +    G          AL+DMYSKC +   A   F    ++ERNV TWT +IGG 
Sbjct: 285 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 344

Query: 166 AMNGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMR-REYG 221
           A  G    +L+LF  M  +  GV PN  T   +L  C  +  +  G++ H   +R  +Y 
Sbjct: 345 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD 404

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
              +     CL+++Y + G +D A  V + M  K  A +W +++    M+
Sbjct: 405 SSAYFVA-NCLINMYSKCGDVDTARHVFDSMSQKS-AISWTSMMTGYGMH 452



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 62/342 (18%)

Query: 11  CQKVFDGI-----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLA 62
           C   F G+      E +V    A+++  ++CG ++ A  +FDE+ +R   D I+WN++++
Sbjct: 28  CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVS 87

Query: 63  GYAQCGKSREALHLFHLMQ--IHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIE 116
            + +   +  AL LF  M   +H+   NE    +S+V++L AC  L A+ Q +  H    
Sbjct: 88  AHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAI 147

Query: 117 RNRLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMD 145
           RN   + V +G AL+D Y+KC                               GN   A +
Sbjct: 148 RNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFE 207

Query: 146 FFWGMKERNV----YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            F  M++ N+     TWT+VI G +  G   ++L +F  M  +G  PN VT +SVL  C 
Sbjct: 208 LFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACA 267

Query: 202 VVGLVEEGRE-HFDSMR-------REYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM 252
            +G   +G E H  S++        ++G E   L  Y  L+D+Y +      A  + + +
Sbjct: 268 SLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDI 327

Query: 253 PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           P++  +   W  ++     Y ++     A +  VE+ ++ +G
Sbjct: 328 PLEERNVVTWTVMIGGHAQYGDSND---ALKLFVEMISEPYG 366



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
            +L+  ++  VL AC  L +   G   H  I  N  +  V +  ALV MYS+CG++ +A 
Sbjct: 6   TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 65

Query: 145 DFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLM------KQAGVRPNEVTFVS 195
             F  + +R   +V +W S++     +     +L+LFS M      K    R + ++ V+
Sbjct: 66  MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 125

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +L  C  +  V + +E H +++R    ++ ++ +   L+D Y + G ++ A+ V N M  
Sbjct: 126 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVFNMMEF 183

Query: 255 KPHAGAWGALL 265
           K    +W A++
Sbjct: 184 KD-VVSWNAMV 193


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/438 (45%), Positives = 283/438 (64%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           + QT++++  AK G++D+A  +  EM E+   AWN ++ GYA  G+SREAL  +  +Q+ 
Sbjct: 499 LVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLE 558

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            + +++V+ +SVL+ACT   +L +G+  H       L   V +  AL +MYSKCG+M  A
Sbjct: 559 AIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENA 618

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M  R+  +W  ++   A +G  E+ L+L   M+Q GV+ N +TFVSVL  C   
Sbjct: 619 RRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHA 678

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GL+ EG ++F S+  + GIE   EHYGCLVDL GRAG+L EA   I+KMP++P    W +
Sbjct: 679 GLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWAS 738

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR+ K+ + G+LA+ KL+EL+  N  A V+LSNIY+E  +W     +R+ M ++ V
Sbjct: 739 LLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRV 798

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           KK+PG S I+V  +VHEF   D +HPR  EI   + E+   ++ AGYV +T  V++D++E
Sbjct: 799 KKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDE 858

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           E+KE  L  HSEK+AIAFGLIS  E   + I KNLRVC DCH  TK ISK+  REI+VRD
Sbjct: 859 EQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRD 918

Query: 444 RNRFHHFKEGKCSCKGYW 461
            +RFHHF++G CSCK YW
Sbjct: 919 NHRFHHFRDGSCSCKDYW 936



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 136/248 (54%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  DV   TA+++   KCG +  ARK+FD MP R    WN+M++ Y+   +S EA  +F 
Sbjct: 191 HSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQ 250

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ    + + V+ +S+L AC +   L  G+     I     ++ + +GTAL+ MY++C 
Sbjct: 251 RMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCR 310

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +   A   F  MK+ N+ TW+++I   A +G   ++L  F +M+Q G+ PN VTF+S+L 
Sbjct: 311 SPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLN 370

Query: 199 GCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           G     GL E  R H   +  E+G++        LV++YGR    D+A  V +++ + P+
Sbjct: 371 GFTTPSGLEELSRIHL--LITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLEL-PN 427

Query: 258 AGAWGALL 265
             +W +++
Sbjct: 428 LISWNSMI 435



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 135/251 (53%), Gaps = 4/251 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           + A+++   +C   D AR +FD++   + I+WN+M+  Y QC +  +AL LF  MQ   +
Sbjct: 400 RNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGI 459

Query: 86  KLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           + + V+ +++L ACT +G+  + R   H  +E + L  +  + T+LV+MY+K G ++ A 
Sbjct: 460 QPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAE 518

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
                M E+ +  W  +I G A++G   ++LE +  ++   +  ++VTF+SVL  C    
Sbjct: 519 VILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSST 578

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
            + EG+    S   E G++  +     L ++Y + G ++ A  + + MP++  A +W  +
Sbjct: 579 SLAEGK-MIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRS-AVSWNGM 636

Query: 265 LNACRMYKNTE 275
           L A   +  +E
Sbjct: 637 LQAYAQHGESE 647



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 138/267 (51%), Gaps = 6/267 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+   TA+I+  A+C   + A ++F  M + + I W+A++  +A  G   EAL  F +
Sbjct: 293 ELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRM 352

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +  N V+ +S+L+  T    L++    H+ I  + L  T T+  ALV++Y +C +
Sbjct: 353 MQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCES 412

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            + A   F  ++  N+ +W S+IG        + +L+LF  M+Q G++P+ V F+++L G
Sbjct: 413 PDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTIL-G 471

Query: 200 CCVVGLVEEGREHFDSMRREYGI--EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C +G     R+       E G+   P ++    LV++Y +AG LD A  ++ +M  +  
Sbjct: 472 ACTIGSHGRTRKLVHQCVEESGLGGSPLVQ--TSLVNMYAKAGELDVAEVILQEMD-EQQ 528

Query: 258 AGAWGALLNACRMYKNTEMGELASRKL 284
             AW  L+N   ++  +     A +KL
Sbjct: 529 ITAWNVLINGYALHGRSREALEAYQKL 555



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 131/247 (53%), Gaps = 3/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS-REALHLFHLM 80
           + +  TA+++   KCG +  A+ +F+EM E++ + WNAML  Y+  G   + A+ LF  M
Sbjct: 92  NTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRM 151

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            +  VK N ++ ++VL++     AL +G++ H  +  +   + V + TALV+ Y+KCG++
Sbjct: 152 LLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSL 211

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F GM  R+V TW S+I   +++    ++  +F  M+Q G R + VTF+S+L  C
Sbjct: 212 TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
                ++ G+ H      E   E  L     L+ +Y R    ++A  V  +M  + +   
Sbjct: 272 VNPETLQHGK-HVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMK-QTNLIT 329

Query: 261 WGALLNA 267
           W A++ A
Sbjct: 330 WSAIITA 336



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 131/237 (55%), Gaps = 7/237 (2%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           ++CG +  A   F ++  R+ ++WN M++ Y+     +EAL LFH M +  V  N +++V
Sbjct: 3   SRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLV 62

Query: 94  SVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           +VL++C     L  G   H + +ER   + T+ + TAL++MY KCG +  A   F  M E
Sbjct: 63  AVLNSCGSFRELRDGILVHALSLERGFFQNTL-VATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 153 RNVYTWTSVIGGLAMNGAGEK-SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           +NV TW +++G  ++ G   K ++ELF+ M   GV+ N +TF++VL        + +G+ 
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKF 181

Query: 212 HFDSMRR-EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
               +R  E+ ++ ++     LV+ Y + G L +A  V + MP +   G W ++++A
Sbjct: 182 IHSCVRESEHSLDVFVN--TALVNTYTKCGSLTDARKVFDGMPCRS-VGTWNSMISA 235



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV+ + A+ +  +KCG ++ AR++FD MP R  ++WN ML  YAQ G+S E L L   
Sbjct: 596 DSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRK 655

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   VKLN ++ VSVLS+C+H G + +G ++ H       +++       LVD+  + G
Sbjct: 656 MEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAG 715

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            + +A  +   M  E  + TW S++G 
Sbjct: 716 KLQEAEKYISKMPLEPGIVTWASLLGA 742



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 10/137 (7%)

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MYS+CG++  A+  F  ++ RNV +W  +I   +   + +++L LF  M   GV PN +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 193 FVSVLRGCCVVGLVEEGRE----HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            V+VL  C   G   E R+    H  S+ R +     +     L+++YG+ G L +A  V
Sbjct: 61  LVAVLNSC---GSFRELRDGILVHALSLERGFFQNTLVA--TALLNMYGKCGTLLDAQSV 115

Query: 249 INKMPMKPHAGAWGALL 265
             +M  K +   W A+L
Sbjct: 116 FEEMAEK-NVVTWNAML 131


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/461 (43%), Positives = 294/461 (63%), Gaps = 8/461 (1%)

Query: 9   GYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           G C++V   I    ++ DVV  T +I + A  G ++ A K+F+EMP RD ++WN+M++ Y
Sbjct: 143 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCY 202

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            Q G   EAL ++  M+I +V  +  ++VS+LS+C H+GAL  G   H +    RL   +
Sbjct: 203 CQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENI 262

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            +G AL+DMY+KCG++  A+  F  M +R+V+TW S+I G  ++G G++++  F  M  A
Sbjct: 263 FVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMA 322

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           GVRPN +TF+ +L GC   GLV+EG ++F  M  E+ ++P ++HYGC+VDL+GRAG+L E
Sbjct: 323 GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKE 382

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           AL+VI   P +     W  LL +C++++N E+GE+A R LV+L +   G  VLLS IYAE
Sbjct: 383 ALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAE 442

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
           +K+   V  +R++++++G+K  PG S IEV  +VH F   D++HP   EI   L E+  R
Sbjct: 443 AKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHR 502

Query: 365 LKLAGYVANTNPVMYDIEEEEK----EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
             L GY    + ++   E   +    E +   HSEK+AIA+GL    EG  + IVKNLRV
Sbjct: 503 ASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRV 562

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+ TK +S  F+REIIVRDR RFHHFK G CSCK +W
Sbjct: 563 CRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 11/253 (4%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK--SREALHL 76
           H P +  +     A +  G +  A+ +F  +      AWN+M+ G++Q       +A+  
Sbjct: 53  HNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVF 112

Query: 77  F-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           + H++     + +  +   +L AC       + R  H +I R      V L T L+  Y+
Sbjct: 113 YNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYA 172

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
             G +  A   F  M  R++ +W S+I      G  E++L+++  M+ + V  +  T VS
Sbjct: 173 GNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVS 232

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDVINKM 252
           +L  C  VG +  G +    M R  G    +E+      L+D+Y + G L  AL + N M
Sbjct: 233 LLSSCAHVGALHMGVQ----MHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSM 288

Query: 253 PMKPHAGAWGALL 265
           P K     W +++
Sbjct: 289 P-KRDVFTWNSMI 300


>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
 gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
          Length = 555

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/448 (43%), Positives = 279/448 (62%), Gaps = 23/448 (5%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+  PD   + +++S  A  GD+  AR++FD  P    +                + L L
Sbjct: 128 GLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHYV----------------QVLRL 171

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYS 135
           F  M+  D     V+++++LSAC HLGAL   RWAH Y+       +T  L TAL++MY 
Sbjct: 172 FRTMRTAD----HVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATALLNMYM 227

Query: 136 KCGNMNKAMDFFWGMKER--NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           +CG++  A   F     R  +V+TWT +I GLA+NG    +L LF+ MK   ++P+ VT 
Sbjct: 228 RCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTL 287

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            +VL  C   G+V+EG+     M  +Y ++P +EHYGC VDL GRAG L+EAL +I  +P
Sbjct: 288 TAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVP 347

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
            K     WGALL ACR ++N EMG++ + +++ L+ ++ GA+V LSN+YA +  WD V  
Sbjct: 348 FKADVALWGALLVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKWDLVQE 407

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR  MK   + K PG SV+E+D  V+EF +GD +HP+ ++I  ML EI + L L G+   
Sbjct: 408 VRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPA 467

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           T  V +DI+EE+KE  + +HSEK+A+AFGLI+ + G  IRIVKNLR+C DCH V K++S+
Sbjct: 468 TKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSE 527

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           V++R I+VRDRNRFHHFK G CSC  YW
Sbjct: 528 VYDRVIVVRDRNRFHHFKSGSCSCLDYW 555


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/437 (44%), Positives = 288/437 (65%), Gaps = 3/437 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            ++++   KCG+ + AR +FD M ERD I+WN+ML+GY Q G++ EAL LF  M+  D +
Sbjct: 98  NSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQ 157

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
              V+ + ++SAC +LG    GR  H +I  +R+++   L  AL+DMY+KCG++ KA+D 
Sbjct: 158 PTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDL 217

Query: 147 FWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           F G+   ERN  +W  +I G  M+G G+++LELFS M++ GV PN  TF S+L  C   G
Sbjct: 218 FNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAG 277

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           L++EGR+ F  M+R   +    +H+ C+VD+ GRAG L EA D+I +MP  P  G WGAL
Sbjct: 278 LIDEGRKCFAEMKR-LSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGAL 336

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+++ N E+G+ A+  L++LE  + G YVL+SNIYA S  W  V  +RQ MK KG+K
Sbjct: 337 LLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLK 396

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K    S+IE  +++  F   D+ +P  +E+   +  ++  +K+AGYV + +  ++D+EEE
Sbjct: 397 KPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEE 456

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           +KE  L  HSEK+A+AFG++ +  G+ IR+ KNLRVC DCH   K IS ++ R+IIVRD 
Sbjct: 457 DKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDA 516

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFHHF+ G CSCK YW
Sbjct: 517 NRFHHFQGGTCSCKDYW 533



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 138/266 (51%), Gaps = 4/266 (1%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSM 92
           AKCG     RK+FDEM  +D + W AM+  Y Q  K  EAL LF  MQ  +  L + +++
Sbjct: 3   AKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAV 62

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           VSV SA   LG +      H Y  R  L   + +G +++ M++KCGN  KA   F  M E
Sbjct: 63  VSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMME 122

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           R+V +W S++ G   NG   ++L LF  M+ +  +P  VT + ++  C  +G    GR+ 
Sbjct: 123 RDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRK- 181

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMY 271
           F     +  +E        L+D+Y + G L++A+D+ N + P + +AG+W  L++   M+
Sbjct: 182 FHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMH 241

Query: 272 KN-TEMGELASRKLVELETKNHGAYV 296
            +  E  EL SR   E    NH  + 
Sbjct: 242 GHGKEALELFSRMQEEGVEPNHFTFT 267


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/493 (41%), Positives = 306/493 (62%), Gaps = 33/493 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFD------------- 47
           MY E GC+G+ +KVFD + +P++V   A+++AC +  DV  AR++FD             
Sbjct: 317 MYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVM 376

Query: 48  ------------------EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
                             EMP RD ++W+ M+ G++  G   E+   F  +   +++ NE
Sbjct: 377 LAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNE 436

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
           VS+  VLSAC+  GA + G+  H ++E++     V++  AL+DMYS+CGN+  A   F G
Sbjct: 437 VSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 496

Query: 150 MKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M+E R++ +WTS+I GLAM+G GE+++ +F+ M ++GV P+E++F+S+L  C   GL++E
Sbjct: 497 MQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKE 556

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G  +F  M+R Y IEP +EHYGC+VDLYGR+G+L +A   I +MP+ P A  W  LL AC
Sbjct: 557 GEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGAC 616

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
             + N E+ E   ++L EL+  N G  VLLSN+YA +  W  V ++R+ M  + +KK+  
Sbjct: 617 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITA 676

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK-LAGYVANTNPVMYDIEEEEKE 387
            S++EV + +++F A ++      E    L EI  RL+  AGY       +YD+EEEEKE
Sbjct: 677 WSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKE 736

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
           D + KHSEK+A+AF L  L +G  IRIVKNLR+C DCH V K+ S+V+  EI++RDRNRF
Sbjct: 737 DQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRF 796

Query: 448 HHFKEGKCSCKGY 460
           H FK+G CSC  Y
Sbjct: 797 HSFKDGSCSCGDY 809



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 101/241 (41%), Gaps = 13/241 (5%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACT 100
           AR++    PE D   +N ++ GY++  +   ++ +F  +M+   +  +  S   V+ A  
Sbjct: 225 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAA 284

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           +  +L  G   H    ++ L   + + T L+ MY +CG +  A   F  M + N+  W +
Sbjct: 285 NFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNA 344

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           V+           + E+F  M    VR N  ++  +L G    G +E  +  F  M    
Sbjct: 345 VVTACFRGNDVSGAREIFDKML---VR-NHTSWNVMLAGYIKAGELECAKRIFSEMPHRD 400

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMG 277
            +      +  ++  +   G  +E+     ++    M+P+  +   +L+AC      E G
Sbjct: 401 DVS-----WSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFG 455

Query: 278 E 278
           +
Sbjct: 456 K 456


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 287/436 (65%), Gaps = 1/436 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT++++   KC ++  ARK+F+EMP R+ +AW AM++G+A+ G   EA+ LF  MQ   +
Sbjct: 130 QTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGI 189

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + + +++VSV+SAC   GALD G W H YIE+  +   + L TALVDMY+KCG + +A  
Sbjct: 190 QPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQ 249

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  ++   W+S+I G A +G  + +++ F  M +  V P+ VTF++VL  C   GL
Sbjct: 250 VFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGL 309

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V  GR  F S+  E+GIEP +EHYGC VDL  R+G ++EA  +   M + P+A  W +LL
Sbjct: 310 VSRGRR-FWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLL 368

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
             C+  K   +GE+ +R L+ELE  N   Y+++SN+Y+    W+++  +R++MK K +K 
Sbjct: 369 MGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKP 428

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PGCS IEVD  VHEF  GD++HP    +   + E+S R++ +GY  + + V++ + +EE
Sbjct: 429 VPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEE 488

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L +HSE+ AIA+GL+  +  + IR+VKNLRVC DCH+V K+ISK++ REIIVRDR 
Sbjct: 489 KECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRV 548

Query: 446 RFHHFKEGKCSCKGYW 461
           RFH F +G CSCK +W
Sbjct: 549 RFHKFIKGTCSCKDFW 564



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 143/268 (53%), Gaps = 5/268 (1%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFH-LMQIHDVKLNE 89
           A +  G+++ AR +F ++P  +  +WN+++ GY+Q    S+E + LF  L +      N 
Sbjct: 33  ALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNS 92

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
            ++  VL AC  + A  +G   H ++ ++    ++ + T+LV+ Y KC  +  A   F  
Sbjct: 93  FTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEE 152

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M  RN+  WT++I G A  GA ++++ELF  M++AG++P+ +T VSV+  C V G ++ G
Sbjct: 153 MPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG 212

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
                +   +Y +   LE    LVD+Y + G ++ A  V   MP+K    AW +++    
Sbjct: 213 Y-WLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVK-DTTAWSSMIMGFA 270

Query: 270 MYKNTEMGELASRKLVELE-TKNHGAYV 296
            +   +    A ++++E E T +H  ++
Sbjct: 271 YHGLAQDAIDAFQQMLETEVTPDHVTFL 298



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 1/144 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   TA++   AKCG ++ A+++F  MP +D  AW++M+ G+A  G +++A+  F  M 
Sbjct: 227 DLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQML 286

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +V  + V+ ++VLSAC H G + +GR     +    ++ +V      VD+  + G + 
Sbjct: 287 ETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVE 346

Query: 142 KAMDFFWGMK-ERNVYTWTSVIGG 164
           +A      MK   N  TW S++ G
Sbjct: 347 EAYRITTTMKIPPNAATWRSLLMG 370


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/442 (42%), Positives = 279/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+   +++I   AKC  V  + ++F  + ERD I+WN+++AG  Q G   E L  F  
Sbjct: 271 DADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQ 330

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +K    S  S++ AC HL  L  G+  H YI RN     + + ++LVDMY+KCGN
Sbjct: 331 MLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGN 390

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M+ R++ +WT++I G A++G    ++ELF  M+  G++PN V F++VL  
Sbjct: 391 IRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTA 450

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+E  ++F+SM R++GI P +EHY  + DL GRAGRL+EA D I  M + P   
Sbjct: 451 CSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGS 510

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL+ACR++ N +M E  + +++E++  N GAY+LL+NIY+ ++ W      R  M+
Sbjct: 511 IWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMR 570

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G++K P CS IEV  +V+ F AGDE+HP Y +I   +  +   ++  GYV +T+ V +
Sbjct: 571 RIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHH 630

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEE+K+  +C HSE++AI FG+I+   G+ IR+ KNLRVC DCH  TK ISK+  REI
Sbjct: 631 DVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREI 690

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD +RFHHFK G CSC  YW
Sbjct: 691 VVRDNSRFHHFKNGTCSCGDYW 712



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 128/258 (49%), Gaps = 3/258 (1%)

Query: 40  DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
           D  RK+F+ MPE+D ++WN ++AG A+ G   E L +   M   ++K +  ++ SVL   
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLI 249

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
                + +G+  H    R  L   + + ++L+DMY+KC  +  +   F  + ER+  +W 
Sbjct: 250 AENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWN 309

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           S+I G   NG  ++ L  F  M  A ++P   +F S++  C  +  +  G++    + R 
Sbjct: 310 SIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN 369

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY-KNTEMGE 278
            G +  +     LVD+Y + G +  A  + ++M ++    +W A++  C ++ +  +  E
Sbjct: 370 -GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMV-SWTAMIMGCALHGQAPDAIE 427

Query: 279 LASRKLVELETKNHGAYV 296
           L  +   E    NH A++
Sbjct: 428 LFEQMETEGIKPNHVAFM 445



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 36/258 (13%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
           ++F+ +     +AW +++  Y   G   ++L  F  M    +  +     SVL +C  L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA-------------------- 143
            L+ G   H YI R  L   +  G AL++MYSK   + ++                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 144 ------------MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
                          F  M E+++ +W ++I G A NG  E++L +   M  A ++P+  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T  SVL        +  G+E H  S+R+  G++  +     L+D+Y +  R+ ++  V  
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCRVFT 298

Query: 251 KMPMKPHAGAWGALLNAC 268
            +  +    +W +++  C
Sbjct: 299 LLTERD-GISWNSIIAGC 315



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 32/151 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +++FD +   D+V  TAMI  C                           
Sbjct: 384 MYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGC--------------------------- 416

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
               A  G++ +A+ LF  M+   +K N V+ ++VL+AC+H G +D+  ++ +       
Sbjct: 417 ----ALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFG 472

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +   V    A+ D+  + G + +A DF  GM
Sbjct: 473 IAPGVEHYAAVSDLLGRAGRLEEAYDFICGM 503


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/445 (44%), Positives = 285/445 (64%), Gaps = 5/445 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHL 79
           D++   A+I   +KC     AR MFD +P +D   + W  ++ G AQ G++ EAL LF  
Sbjct: 408 DLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQ 467

Query: 80  MQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL-GTALVDMYSK 136
           M   D  V  N  ++   L AC  LGAL  GR  H Y+ RNR +  +      L+DMYSK
Sbjct: 468 MLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 527

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G+++ A   F  M +RN  +WTS++ G  M+G GE++L++F  M++ G+ P+ VTFV V
Sbjct: 528 SGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVV 587

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G+V++G  +F+ M +++G+ P  EHY C+VDL  RAGRLDEA+++I  MPMKP
Sbjct: 588 LYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKP 647

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               W ALL+ACR+Y N E+GE A+ +L+ELE+ N G+Y LLSNIYA ++ W  V  +R 
Sbjct: 648 TPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRY 707

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +MK  G+KK PGCS ++  +    FFAGD +HP   +I  +L ++ +R+K  GYV +   
Sbjct: 708 LMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRF 767

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            ++D+++EEK D L +HSEK+A+A+G+++   G PIRI KNLR C DCH     IS +  
Sbjct: 768 ALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIE 827

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
            EIIVRD +RFHHFK G CSC+GYW
Sbjct: 828 HEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 16/290 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MYA+ G +    KVF+ +   DVV   AM++  ++ G  D A  +F+++ E     + + 
Sbjct: 275 MYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVT 334

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-- 114
           W+A++AGYAQ G   EAL +F  M++   + N V++VS+LS C   G L  G+  H +  
Sbjct: 335 WSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAI 394

Query: 115 -----IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAM 167
                ++ N     + +  AL+DMYSKC +   A   F     K+R+V TWT +IGG A 
Sbjct: 395 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQ 454

Query: 168 NGAGEKSLELFSLMKQAG--VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
           +G   ++LELFS M Q    V PN  T    L  C  +G +  GR+    + R       
Sbjct: 455 HGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 514

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           L    CL+D+Y ++G +D A  V + M  + +  +W +L+    M+   E
Sbjct: 515 LFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGRGE 563



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 39/237 (16%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKS 70
           VF    E +V     ++S   +CG  + AR++FDEM ER   D ++WN+++A Y Q G S
Sbjct: 152 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 211

Query: 71  REALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             A+ +F  M +   ++ + VS+V+VL AC  +GA  +G+  H Y  R+ L   V +G A
Sbjct: 212 IRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 271

Query: 130 LVDMYSKCGNMNKAMDFFWGMK-----------------------------------ERN 154
           +VDMY+KCG M +A   F  MK                                   E N
Sbjct: 272 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 331

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           V TW++VI G A  G G ++L++F  M+  G  PN VT VS+L GC + G +  G+E
Sbjct: 332 VVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKE 388



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 8/216 (3%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN ++      G   + L L+  MQ    + +  +   VL AC  + +   G   H  + 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV---YTWTSVIGGLAMNGAGEK 173
            +  +  V +G  LV MY +CG    A   F  M+ER V    +W S++      G   +
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 174 SLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC 231
           ++++F  M +  G+RP+ V+ V+VL  C  VG    G++ H  ++R     + ++ +   
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN--A 271

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +VD+Y + G ++EA  V  +M +K    +W A++  
Sbjct: 272 VVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTG 306


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/461 (43%), Positives = 284/461 (61%), Gaps = 9/461 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   +C  +  G  + DV      I+   KCG V+ A+K+FDEMP +  I+WNAM++G
Sbjct: 169 ELGSSLHCSTLKYGF-DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSG 227

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ G +   L L+  M ++ V  + V++V VLS+C +LGA   G      I+ +     
Sbjct: 228 YAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSN 287

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             L  AL++MY++CGN+ KA   F GM ER + +WT++IGG  M+G GE +++LF  M +
Sbjct: 288 PFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 347

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           +G+ P+   FV VL  C   GL ++G E+F  M+R Y +EP  EHY C+VDL GRAGRL 
Sbjct: 348 SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLK 407

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           EA  +I  MP+KP    WGALL AC+++KN E+ ELA  +++ELE +N G YVLLSNIY+
Sbjct: 408 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYS 467

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            + N   V+ +R +MK K +KK PGCS +E+   VH F  GD  H + +EI  +L E+  
Sbjct: 468 NANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELE- 526

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCK---HSEKVAIAFGLISLKEGVPIRIVKNLRV 420
               A  +        D  EE  +D   +   HSEK+A+AFGL++   G  + I+KNLR+
Sbjct: 527 ----AIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRI 582

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   KM+SK+ +R++ VRD  RFHHF+ G CSCK YW
Sbjct: 583 CEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 8/263 (3%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDE--MPERDPIAWNAMLAGYAQCGKSREALH 75
           + EP V  QT +IS   K   VD ARK+F+E     +  + +NA+++GY    K  EA+ 
Sbjct: 81  VFEPFV--QTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVL 138

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M    V +N V+++ ++ AC     L+ G   H    +      V++    + MY 
Sbjct: 139 LFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYM 198

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG++N A   F  M  + + +W +++ G A NG     LEL+  M   GV P+ VT V 
Sbjct: 199 KCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVG 258

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           VL  C  +G    G E  F      +   P+L +   L+++Y R G L +A  V + MP 
Sbjct: 259 VLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDGMPE 316

Query: 255 KPHAGAWGALLNACRMYKNTEMG 277
           +    +W A++    M+ + E+ 
Sbjct: 317 RTLV-SWTAIIGGYGMHGHGEIA 338



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L   Q VFDG+ E  +V  TA+I                              
Sbjct: 297 MYARCGNLTKAQAVFDGMPERTLVSWTAII------------------------------ 326

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-R 119
             GY   G    A+ LF  M    ++ +  + V VLSAC+H G  DQG      ++RN +
Sbjct: 327 -GGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQ 385

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           L+      + +VD+  + G + +A      M  + +   W +++G 
Sbjct: 386 LEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 431


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/441 (45%), Positives = 285/441 (64%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM- 80
           D V  TAM+S     G+V  A + F+ MP R+ ++WNA++AGY +   + +AL LF  M 
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  +V+ N  ++ SVL  C++L AL  G+  H +  +  L   +T+GT+LV MY KCG++
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDL 292

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  M  R+V  W ++I G A +G G++++ LF  MK  GV PN +TFV+VL  C
Sbjct: 293 SSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 352

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GL + G   F+ M+  YGIEP ++HY C+VDL  RAG+L+ A+D+I  MP +PH  A
Sbjct: 353 IHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSA 412

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           +G LL ACR+YKN E  ELA+ KL+E + ++ GAYV L+NIYA +  WD V  VR+ MK 
Sbjct: 413 YGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKD 472

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
             V K PG S IE+   +HEF + D  HP+   I   LG+++ R+K  GYV + + V++D
Sbjct: 473 NAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHD 532

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           ++E  K   L +HSEK+AI+FGLIS   G+ +RI KNLRVC DCH+  K+ISK+ +REII
Sbjct: 533 VDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREII 592

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD  RFHHF+ G CSC  YW
Sbjct: 593 LRDTTRFHHFRGGHCSCGDYW 613



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 12/264 (4%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG L   + +FD I  PD V    ++S     GD D AR++F  MP RD ++WN M++G 
Sbjct: 62  LGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGL 121

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           ++ G   EA  +F  M + +  ++  +MVS  +    + A ++      +      K   
Sbjct: 122 SKSGAVEEAKAVFLAMPVRN-SVSWNAMVSGFACSRDMSAAEE------WFRNAPEKGDA 174

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQ 183
            L TA+V  Y   GN+ KA+++F  M  RN+ +W +V+ G   N   + +L LF +++++
Sbjct: 175 VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVRE 234

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           A V+PN  T  SVL GC  +  +  G++ H   M+        L     LV +Y + G L
Sbjct: 235 ANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRN--LTVGTSLVSMYCKCGDL 292

Query: 243 DEALDVINKMPMKPHAGAWGALLN 266
             A  +  +M  +    AW A+++
Sbjct: 293 SSACKLFGEMHTR-DVVAWNAMIS 315



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 32/151 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L    K+F  +H  DVV   AMIS  A+ GD                      
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGD---------------------- 322

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                     +EA++LF  M+   V+ N ++ V+VL+AC H G  D G R      E   
Sbjct: 323 ---------GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 373

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           ++  V   + +VD+  + G + +A+D    M
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/440 (44%), Positives = 282/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  TA++   AKCG +  AR++FD M  RD ++W+AM+  Y + G   EA   FHLM+
Sbjct: 398 DLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMK 457

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            ++V+ + V+ +++L+AC HLGALD G   +    +  L   + +G AL++M  K G++ 
Sbjct: 458 RNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIE 517

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  M +R+V TW  +IGG +++G   ++L+LF  M +   RPN VTFV VL  C 
Sbjct: 518 RARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACS 577

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G VEEGR  F  +    GI P +E YGC+VDL GRAG LDEA  +IN+MP+KP++  W
Sbjct: 578 RAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIW 637

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL ACR+Y N ++ E A+ + +  E  +   YV LS++YA +  W+ V  VR++M+++
Sbjct: 638 STLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESR 697

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GV+K  GC+ IEV+ ++H F   D +HP+  EI   L  +   +K  GY+  T  V++++
Sbjct: 698 GVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNV 757

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            E+EKE+ +  HSEK+AIA+G++SL  G PIRI KNLRVC DCH  +K ISKV  REII 
Sbjct: 758 GEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIA 817

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD +RFHHFK G CSC  YW
Sbjct: 818 RDASRFHHFKNGVCSCGDYW 837



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    TA++S   K G +D AR++FD + +RD   +N M+ GYA+ G   +A  LF+ MQ
Sbjct: 196 DFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQ 255

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K N +S +S+L  C+   AL  G+  H       L   V + TAL+ MY  CG++ 
Sbjct: 256 QEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIE 315

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  MK R+V +WT +I G A N   E +  LF+ M++ G++P+ +T++ ++  C 
Sbjct: 316 GARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACA 375

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
               +   RE H   +R  +G +  ++    LV +Y + G + +A  V + M  +    +
Sbjct: 376 SSADLSLAREIHSQVVRAGFGTDLLVDT--ALVHMYAKCGAIKDARQVFDAMSRRDVV-S 432

Query: 261 WGALLNA 267
           W A++ A
Sbjct: 433 WSAMIGA 439



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 135/280 (48%), Gaps = 33/280 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   TA+I     CG ++ AR++FD+M  RD ++W  M+ GYA+     +A  LF  MQ
Sbjct: 297 DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQ 356

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ + ++ + +++AC     L   R  H  + R      + + TALV MY+KCG + 
Sbjct: 357 EEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIK 416

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  R+V +W+++IG    NG GE++ E F LMK+  V P+ VT++++L  C 
Sbjct: 417 DARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACG 476

Query: 202 VVGLVEEGRE--------------------------HFDSMRREYGIEPWLEH----YGC 231
            +G ++ G E                          H    R  Y  E  ++     +  
Sbjct: 477 HLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNV 536

Query: 232 LVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
           ++  Y   G   EALD+ ++M     +P++  +  +L+AC
Sbjct: 537 MIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSAC 576



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 3/230 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +I   + CG++  AR+ FD +  +  + WNA++AGYAQ G  +EA  LF  M    ++
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME 159

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            + ++ + VL AC+    L  G+  H  + +        +GTALV MY K G+M+ A   
Sbjct: 160 PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQV 219

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F G+ +R+V T+  +IGG A +G GEK+ +LF  M+Q G +PN ++F+S+L GC     +
Sbjct: 220 FDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEAL 279

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             G+  H   M    G+   +     L+ +Y   G ++ A  V +KM ++
Sbjct: 280 AWGKAVHAQCM--NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR 327



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 1/166 (0%)

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  + V +   C  L     G+    +I ++  ++ +     L+ ++S CGNM +A   
Sbjct: 59  IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQT 118

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++ + V TW ++I G A  G  +++  LF  M    + P+ +TF+ VL  C     +
Sbjct: 119 FDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGL 178

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           + G+E F +   + G          LV +Y + G +D A  V + +
Sbjct: 179 KLGKE-FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL 223


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/457 (42%), Positives = 290/457 (63%), Gaps = 1/457 (0%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG   +C  +  G+H  DV    A++   AKCG ++ + ++F E P R+ + WN ++ G+
Sbjct: 156 LGNQIHCHVIKIGLHS-DVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGH 214

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            Q G   +AL LF  M  + V+  EV+  S L AC  L AL+ G   H    +      +
Sbjct: 215 VQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDI 274

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            +  AL+DMY+KCG++  A   F  M +++  +W ++I G +M+G G ++L +F  M++ 
Sbjct: 275 VVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQET 334

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            V+P+++TFV VL  C   GL+++G+ +F SM +++GIEP +EHY C+V L GR G LD+
Sbjct: 335 EVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDK 394

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           A+ +I+++P +P    W ALL AC ++ + E+G +++++++E+E ++   +VLLSN+YA 
Sbjct: 395 AVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYAT 454

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
           +K WD V +VR+ MK KGVKK PG S IE    VH F  GD +HP    I  ML  +  +
Sbjct: 455 AKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMK 514

Query: 365 LKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDC 424
            K AGY+ N N V+ D+E+EEKE  L  HSE++A++FG+I    G PIRI+KNLR+C DC
Sbjct: 515 TKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDC 574

Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           H   K ISKV  REI+VRD NRFHHF+EG CSC  YW
Sbjct: 575 HAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACT 100
           A K+FDEMPER+ I++  ++ GYA+  +  EA+ LF  +++H +V  N+ +  SVL AC 
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELF--VRLHREVLPNQFTFASVLQACA 149

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
            +  L+ G   H ++ +  L   V +  AL+D+Y+KCG M  +M+ F     RN  TW +
Sbjct: 150 TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNT 209

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           VI G    G GEK+L LF  M +  V+  EVT+ S LR C  +  +E G +   S+  + 
Sbjct: 210 VIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKT 268

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
             +  +     L+D+Y + G + +A  V + M  K    +W A+++   M+
Sbjct: 269 TFDKDIVVTNALIDMYAKCGSIKDARLVFDLMN-KQDEVSWNAMISGYSMH 318



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 58  NAMLAGYAQCGKSREALHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           N  L  +++ G S ++  L    +  +   + N  +  + L  C       +G+  H  I
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEI 64

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
            +    + +     L++MY K   +  A   F  M ERN  ++ ++I G A +    +++
Sbjct: 65  LKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAI 124

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVV-GLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           ELF  + +  V PN+ TF SVL+ C  + GL    + H   ++   G+   +     L+D
Sbjct: 125 ELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIK--IGLHSDVFVSNALMD 181

Query: 235 LYGRAGRLDEALDVINKMPMK 255
           +Y + GR++ ++++  + P +
Sbjct: 182 VYAKCGRMENSMELFAESPHR 202


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/445 (46%), Positives = 295/445 (66%), Gaps = 6/445 (1%)

Query: 1   MYAELGCLGYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           +Y  LG +   ++V + G    DVV    M+S   K GD+  AR++F  MPER+ ++W+A
Sbjct: 122 LYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSA 181

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+    + G+  EAL +F  M   + + + V +VSVL AC HLGA+++GRW H Y+E   
Sbjct: 182 MVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGS 241

Query: 120 L---KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
               +  + L TALVDMY KCG M  A   F G+  R+V  W ++IGGLAMNG GE++LE
Sbjct: 242 FGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALE 301

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M Q G  PNE TF++VL  C   G V+EG+  F SM+ +YGI+P  EHYGCL DL 
Sbjct: 302 LFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ-DYGIKPQREHYGCLADLL 360

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG ++EA  ++  MPM+PHA  WGAL+++C+M+ +  +GE   ++L+ELE  + G YV
Sbjct: 361 GRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYV 420

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           +L N+YA +  W+    +RQ+M+ +G KK  G S IE++  VHEF +GD  HP   +I  
Sbjct: 421 VLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYA 480

Query: 357 MLGEISRRLKLAGYVANTNPVMYDI-EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
           +L +I RRL+L GYV +T+ V+ D+ +EE+K   L  HSE++A+AFG++++ +GVPIRIV
Sbjct: 481 LLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIV 540

Query: 416 KNLRVCWDCHDVTKMISKVFNREII 440
           KNLRVC DCH  +K++SK++ REII
Sbjct: 541 KNLRVCRDCHVHSKLVSKLYEREII 565


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/443 (44%), Positives = 288/443 (65%), Gaps = 3/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV  ++A+I   +K G+   A  +F+EM   D + WN+++ G+AQ     E LHL+  
Sbjct: 146 ESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKR 205

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+  D   ++ ++ SVL ACT L  L+ GR  HV++ +      + L  AL+DMY KCG+
Sbjct: 206 MKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGS 263

Query: 140 MNKA-MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +  A + F   M E++V +W+++I GLA NG    +L+LF  MK  G +PN +T + VL 
Sbjct: 264 LEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLF 323

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV +G  +F SM+  +GI+P  EHYGC++DL GRAG+LDEA+ +I++M  +P A
Sbjct: 324 ACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDA 383

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL ACR++KN ++   A++++++L+  + G Y+LLSNIYA S+ W+ V  VR+ M
Sbjct: 384 VTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKM 443

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +GVKK PGCS IEV ++VH F  GD +HPR  EI+  L ++ +RL   GYV +TN V+
Sbjct: 444 RTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVL 503

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+E E+ ED+L  HSEK+AI FGL+SL     I I KNLR+C DCH   K++S++ NR 
Sbjct: 504 QDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRV 563

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I++RD  R+HHF+ G CSC  YW
Sbjct: 564 IVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 8/255 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           + VF   +EP       +I+   K G +D AR +FDEMP+R+ ++W  M++ Y+    + 
Sbjct: 40  EHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNH 99

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           +AL    LM    V+ N  +  SVL AC  L  L   R  H  I +  L+  V + +AL+
Sbjct: 100 KALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSALI 156

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           D YSK G  + A++ F  M   ++  W S+IGG A N  G+++L L+  MK+A    ++ 
Sbjct: 157 DTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQS 216

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T  SVLR C  + L+E GR+ H   ++  Y  +  L +   L+D+Y + G L++A  +  
Sbjct: 217 TLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNN--ALLDMYCKCGSLEDANLLFT 272

Query: 251 KMPMKPHAGAWGALL 265
           +M  +    +W  ++
Sbjct: 273 RMMTEKDVISWSTMI 287



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 10/184 (5%)

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           K+ EA+H   L        + ++   ++  C   GA+ Q R  H ++  N  +    L  
Sbjct: 2   KAMEAMHRNRL------SADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLIN 55

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
            L++MY K G +++A + F  M +RNV +WT++I   + +    K+L+   LM + GVRP
Sbjct: 56  TLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRP 115

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           N  T+ SVLR C   GL+   + H   ++   G+E  +     L+D Y + G   +AL+V
Sbjct: 116 NMYTYSSVLRACD--GLLNLRQLHGSILK--VGLESDVFVRSALIDTYSKLGEQHDALNV 171

Query: 249 INKM 252
            N+M
Sbjct: 172 FNEM 175


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/441 (45%), Positives = 285/441 (64%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM- 80
           D V  TAM+S     G+V  A + F+ MP R+ ++WNA++AGY +   + +AL LF  M 
Sbjct: 222 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 281

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  +V+ N  ++ SVL  C++L AL  G+  H +  +  L   +T+GT+LV MY KCG++
Sbjct: 282 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDL 341

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  M  R+V  W ++I G A +G G++++ LF  MK  GV PN +TFV+VL  C
Sbjct: 342 SSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 401

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GL + G   F+ M+  YGIEP ++HY C+VDL  RAG+L+ A+D+I  MP +PH  A
Sbjct: 402 IHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSA 461

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           +G LL ACR+YKN E  ELA+ KL+E + ++ GAYV L+NIYA +  WD V  VR+ MK 
Sbjct: 462 YGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKD 521

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
             V K PG S IE+   +HEF + D  HP+   I   LG+++ R+K  GYV + + V++D
Sbjct: 522 NAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHD 581

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           ++E  K   L +HSEK+AI+FGLIS   G+ +RI KNLRVC DCH+  K+ISK+ +REII
Sbjct: 582 VDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREII 641

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD  RFHHF+ G CSC  YW
Sbjct: 642 LRDTTRFHHFRGGHCSCGDYW 662



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 12/264 (4%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG L   + +FD I  PD V    ++S     GD D AR++F  MP RD ++WN M++G 
Sbjct: 111 LGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGL 170

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           ++ G   EA  +F  M + +  ++  +MVS  +    + A ++      +      K   
Sbjct: 171 SKSGAVEEAKAVFLAMPVRN-SVSWNAMVSGFACSRDMSAAEE------WFRNAPEKGDA 223

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQ 183
            L TA+V  Y   GN+ KA+++F  M  RN+ +W +V+ G   N   + +L LF +++++
Sbjct: 224 VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVRE 283

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           A V+PN  T  SVL GC  +  +  G++ H   M+        L     LV +Y + G L
Sbjct: 284 ANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRN--LTVGTSLVSMYCKCGDL 341

Query: 243 DEALDVINKMPMKPHAGAWGALLN 266
             A  +  +M  +    AW A+++
Sbjct: 342 SSACKLFGEMHTR-DVVAWNAMIS 364



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 32/151 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L    K+F  +H  DVV   AMIS  A+ GD                      
Sbjct: 334 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGD---------------------- 371

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                     +EA++LF  M+   V+ N ++ V+VL+AC H G  D G R      E   
Sbjct: 372 ---------GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 422

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           ++  V   + +VD+  + G + +A+D    M
Sbjct: 423 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 453


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/453 (42%), Positives = 297/453 (65%), Gaps = 2/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  +  G+ +   VC T +I+   +C DVD AR +FD + E   + +NAM+ GYA+  +
Sbjct: 152 HCLSMKLGLDDNVYVCPT-LINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  MQ   +K NE++++SVLS+C  LG+LD G+W H Y +++     V + TA
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTA 270

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DM++KCG+++ A+  F  M+ ++   W+++I   A +G  EKS+ +F  M+   V+P+
Sbjct: 271 LIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPD 330

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+TF+ +L  C   G VEEGR++F  M  ++GI P ++HYG +VDL   AG L++A + I
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFI 390

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           +K+P+ P    W  LL AC  + N ++ E  S ++ EL+  + G YV+LSN+YA +K W+
Sbjct: 391 DKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWE 450

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V ++R++MK +   K+PGCS IEV+  VHEFF+GD       ++   L E+ + LKL+G
Sbjct: 451 YVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSG 510

Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           YV +T+ V++ ++ ++EKE TL  HSEK+AI FGL++   G  IR+VKNLRVC DCH+  
Sbjct: 511 YVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAA 570

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K+IS +F R+++ RD  RFHHF++GKCSC  +W
Sbjct: 571 KLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 19  HEPDVVCQTAMISACAKC---GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           H  DV     +I+ C +      +  AR +F+ M E D + +N+M  GY++     E   
Sbjct: 56  HIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFS 115

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  +    +  +  +  S+L AC    AL++GR  H    +  L   V +   L++MY+
Sbjct: 116 LFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYT 175

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           +C +++ A   F  + E  V  + ++I G A      ++L LF  M+   ++PNE+T +S
Sbjct: 176 ECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLS 235

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C ++G ++ G+       +++    +++    L+D++ + G LD+A+ +  KM  K
Sbjct: 236 VLSSCALLGSLDLGK-WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK 294

Query: 256 PHAGAWGALLNA 267
               AW A++ A
Sbjct: 295 -DTQAWSAMIVA 305


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/465 (43%), Positives = 284/465 (61%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM----PERDPIA 56
           MY + G      +VF      DV    A+++  ++   V  A  +F E      E + ++
Sbjct: 197 MYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVS 256

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W +++A   Q G+  EA+ LF  MQ   V+ N V++  VL A  ++ AL  GR AH +  
Sbjct: 257 WTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSL 316

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R      V +G+ALVDMY+KCG    A   F  M  RNV +W ++IGG AM+G    +++
Sbjct: 317 RKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQ 376

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M++   +P+ VTF  VL  C   GL EEGR +F+ M++ +GI P +EHY C+V L 
Sbjct: 377 LFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLL 436

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GR+G+LDEA D+IN+MP +P +  WG+LL +CR+Y N  + E+A+ KL +LE  N G YV
Sbjct: 437 GRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYV 496

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSNIYA  K WD V  VR  MK  G+KK  GCS IE+  +VH   AGD +HP    I  
Sbjct: 497 LLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITE 556

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L +++  +   G+  + + V++D+EE+EK++ L  HSEK+A+A GLIS + G P+R++K
Sbjct: 557 KLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIK 616

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH+  K IS    REI VRD NRFHHFK+GKCSC  YW
Sbjct: 617 NLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 43/313 (13%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAW 57
           Y  LG  G  + VFD + E +VV  +A+I+  +  GD + A  + ++M     E + I W
Sbjct: 62  YIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITW 121

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N +++G  + G++ +A+     M       +   +   LSA   +  +  G+  H Y+ +
Sbjct: 122 NGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVK 181

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFF---------------WGMK----------- 151
              ++   + TAL+DMY KCG  ++ +  F                G+            
Sbjct: 182 AGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLL 241

Query: 152 ---------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
                    E NV +WTS++     NG   ++++LF  M+  GV PN VT   VL     
Sbjct: 242 FREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFAN 301

Query: 203 VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           V  +  GR  H  S+R+ +  + ++     LVD+Y + G+   A  + + MP + +  +W
Sbjct: 302 VAALMHGRSAHCFSLRKGFLHDVYVG--SALVDMYAKCGKARHARTIFDAMPSR-NVVSW 358

Query: 262 GALLNACRMYKNT 274
            A++    M+ + 
Sbjct: 359 NAMIGGYAMHGDA 371



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 37/210 (17%)

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           L+H ++      +   + S L +C    A    R  H     + L     + ++L+  Y 
Sbjct: 7   LYHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYI 63

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           + G    A   F  M E+NV  W+++I G +  G  E +  L   M+ AGV PN +T+  
Sbjct: 64  RLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNG 123

Query: 196 VLRGC--------CVVGLVEEGREHF---------------DSMRREYG--IEPWLEHYG 230
           ++ G          V  LV    E F               D      G  +  ++   G
Sbjct: 124 LVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAG 183

Query: 231 C---------LVDLYGRAGRLDEALDVINK 251
           C         L+D+YG+ GR DE + V ++
Sbjct: 184 CRLDACVVTALIDMYGKCGRADEIVRVFHE 213


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/435 (43%), Positives = 284/435 (65%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            ++IS  A+ G ++ ARK FD + E++ +++NA++ GYA+  KS EA  LF+ +    + 
Sbjct: 63  NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 122

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  +  S+LS    +GA+ +G   H  + +   K    +  AL+ MYS+CGN+  A   
Sbjct: 123 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 182

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M++RNV +WTS+I G A +G   ++LE+F  M + G +PNE+T+V+VL  C  VG++
Sbjct: 183 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 242

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EG++HF+SM +E+GI P +EHY C+VDL GR+G L EA++ IN MP+   A  W  LL 
Sbjct: 243 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 302

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++ NTE+G  A+  ++E E  +  AY+LLSN++A +  W  V+ +R+ MK + + K 
Sbjct: 303 ACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKE 362

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            GCS IEV+  VH F  G+ +HP+  +I   L +++ ++K  GY+ +T+ V++DIEEE+K
Sbjct: 363 AGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQK 422

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L +HSEK+A+AFGLIS  +  PIRI KNLRVC DCH   K IS    REI+VRD NR
Sbjct: 423 EQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNR 482

Query: 447 FHHFKEGKCSCKGYW 461
           FHH K G CSC  YW
Sbjct: 483 FHHIKNGVCSCNDYW 497



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 42/226 (18%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDVKL 87
           M + CA  G VD +RK+F++MPE + ++W A++  Y Q G+  +EA+ LF          
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF---------- 50

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
               M+S    C                          +G +L+ MY++ G M  A   F
Sbjct: 51  --CKMISASVNC--------------------------VGNSLISMYARSGRMEDARKAF 82

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + E+N+ ++ +++ G A N   E++  LF+ +   G+  +  TF S+L G   +G + 
Sbjct: 83  DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 142

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +G + H   ++  Y     +     L+ +Y R G ++ A  V N+M
Sbjct: 143 KGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEM 186


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/435 (43%), Positives = 284/435 (65%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            ++IS  A+ G ++ ARK FD + E++ +++NA++ GYA+  KS EA  LF+ +    + 
Sbjct: 200 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 259

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  +  S+LS    +GA+ +G   H  + +   K    +  AL+ MYS+CGN+  A   
Sbjct: 260 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 319

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M++RNV +WTS+I G A +G   ++LE+F  M + G +PNE+T+V+VL  C  VG++
Sbjct: 320 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 379

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EG++HF+SM +E+GI P +EHY C+VDL GR+G L EA++ IN MP+   A  W  LL 
Sbjct: 380 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 439

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++ NTE+G  A+  ++E E  +  AY+LLSN++A +  W  V+ +R+ MK + + K 
Sbjct: 440 ACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKE 499

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            GCS IEV+  VH F  G+ +HP+  +I   L +++ ++K  GY+ +T+ V++DIEEE+K
Sbjct: 500 AGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQK 559

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L +HSEK+A+AFGLIS  +  PIRI KNLRVC DCH   K IS    REI+VRD NR
Sbjct: 560 EQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNR 619

Query: 447 FHHFKEGKCSCKGYW 461
           FHH K G CSC  YW
Sbjct: 620 FHHIKNGVCSCNDYW 634



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 119/212 (56%), Gaps = 13/212 (6%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A K+FD+MPER+ + W  M+  +AQ G +R+A+ LF  M++     +  +  SVLSACT 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC---GNMNKAMDFFWGMKERNVYTW 158
           LG L  G+  H  + R  L + V +G +LVDMY+KC   G+++ +   F  M E NV +W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 159 TSVIGGLAMNGAGEK-SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           T++I   A +G  +K ++ELF  M    +RPN  +F SVL+ C  +     G + +    
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS--- 185

Query: 218 REYGIEPWLEHYGC----LVDLYGRAGRLDEA 245
             Y ++  +    C    L+ +Y R+GR+++A
Sbjct: 186 --YAVKLGIASVNCVGNSLISMYARSGRMEDA 215



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDVKL 87
           M + CA  G VD +RK+F++MPE + ++W A++  YAQ G+  +EA+ LF  M    ++ 
Sbjct: 100 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 159

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  S  SVL AC +L     G   + Y  +  +     +G +L+ MY++ G M  A   F
Sbjct: 160 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 219

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + E+N+ ++ +++ G A N   E++  LF+ +   G+  +  TF S+L G   +G + 
Sbjct: 220 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 279

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +G + H   ++  Y     +     L+ +Y R G ++ A  V N+M
Sbjct: 280 KGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEM 323


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/461 (43%), Positives = 284/461 (61%), Gaps = 9/461 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   +C  +  G  + DV      I+   KCG V+ A+K+FDEMP +  I+WNAM++G
Sbjct: 160 ELGSSLHCSTLKYGF-DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSG 218

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ G +   L L+  M ++ V  + V++V VLS+C +LGA   G      ++ +     
Sbjct: 219 YAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSN 278

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             L  AL++MY++CGN+ KA   F GM ER + +WT++IGG  M+G GE +++LF  M +
Sbjct: 279 PFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 338

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           +G+ P+   FV VL  C   GL ++G E+F  M+R Y +EP  EHY C+VDL GRAGRL 
Sbjct: 339 SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLK 398

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           EA  +I  MP+KP    WGALL AC+++KN E+ ELA  +++ELE +N G YVLLSNIY+
Sbjct: 399 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYS 458

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            + N   V+ +R +MK K +KK PGCS +E+   VH F  GD  H + +EI  +L E+  
Sbjct: 459 NANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELE- 517

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCK---HSEKVAIAFGLISLKEGVPIRIVKNLRV 420
               A  +        D  EE  +D   +   HSEK+A+AFGL++   G  + I+KNLR+
Sbjct: 518 ----AIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRI 573

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   KM+SK+ +R++ VRD  RFHHF+ G CSCK YW
Sbjct: 574 CEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 11/273 (4%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDE--MPERDPIAWNAMLAGYAQCGKSREALH 75
           + EP V  QT +IS   K   VD ARK+F+E     +  + +NA+++GY    K  +A+ 
Sbjct: 72  VFEPFV--QTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVL 129

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M    V +N V+++ ++ AC     L+ G   H    +      V++    + MY 
Sbjct: 130 LFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYM 189

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG++N A   F  M  + + +W +++ G A NG     LEL+  M   GV P+ VT V 
Sbjct: 190 KCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVG 249

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           VL  C  +G    G E  F      +   P+L +   L+++Y R G L +A  V + MP 
Sbjct: 250 VLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDGMPE 307

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
           +    +W A++    M+ +   GE+A +   E+
Sbjct: 308 RTLV-SWTAIIGGYGMHGH---GEIAVQLFKEM 336



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L   Q VFDG+ E  +V  TA+I                              
Sbjct: 288 MYARCGNLTKAQAVFDGMPERTLVSWTAII------------------------------ 317

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-R 119
             GY   G    A+ LF  M    ++ +  + V VLSAC+H G  DQG      ++RN +
Sbjct: 318 -GGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQ 376

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           L+      + +VD+  + G + +A      M  + +   W +++G 
Sbjct: 377 LEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 422


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/435 (43%), Positives = 284/435 (65%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            ++IS  A+ G ++ ARK FD + E++ +++NA++ GYA+  KS EA  LF+ +    + 
Sbjct: 195 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 254

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  +  S+LS    +GA+ +G   H  + +   K    +  AL+ MYS+CGN+  A   
Sbjct: 255 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 314

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M++RNV +WTS+I G A +G   ++LE+F  M + G +PNE+T+V+VL  C  VG++
Sbjct: 315 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 374

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EG++HF+SM +E+GI P +EHY C+VDL GR+G L EA++ IN MP+   A  W  LL 
Sbjct: 375 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 434

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++ NTE+G  A+  ++E E  +  AY+LLSN++A +  W  V+ +R+ MK + + K 
Sbjct: 435 ACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKE 494

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            GCS IEV+  VH F  G+ +HP+  +I   L +++ ++K  GY+ +T+ V++DIEEE+K
Sbjct: 495 AGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQK 554

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L +HSEK+A+AFGLIS  +  PIRI KNLRVC DCH   K IS    REI+VRD NR
Sbjct: 555 EQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNR 614

Query: 447 FHHFKEGKCSCKGYW 461
           FHH K G CSC  YW
Sbjct: 615 FHHIKNGVCSCNDYW 629



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 119/212 (56%), Gaps = 13/212 (6%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A K+FD+MPER+ + W  M+  +AQ G +R+A+ LF  M++     +  +  SVLSACT 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC---GNMNKAMDFFWGMKERNVYTW 158
           LG L  G+  H  + R  L + V +G +LVDMY+KC   G+++ +   F  M E NV +W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 159 TSVIGGLAMNGAGEK-SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           T++I   A +G  +K ++ELF  M    +RPN  +F SVL+ C  +     G + +    
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS--- 180

Query: 218 REYGIEPWLEHYGC----LVDLYGRAGRLDEA 245
             Y ++  +    C    L+ +Y R+GR+++A
Sbjct: 181 --YAVKLGIASVNCVGNSLISMYARSGRMEDA 210



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDVKL 87
           M + CA  G VD +RK+F++MPE + ++W A++  YAQ G+  +EA+ LF  M    ++ 
Sbjct: 95  MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 154

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  S  SVL AC +L     G   + Y  +  +     +G +L+ MY++ G M  A   F
Sbjct: 155 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 214

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + E+N+ ++ +++ G A N   E++  LF+ +   G+  +  TF S+L G   +G + 
Sbjct: 215 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 274

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +G + H   ++  Y     +     L+ +Y R G ++ A  V N+M
Sbjct: 275 KGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEM 318


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/434 (44%), Positives = 284/434 (65%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++IS  A+ G ++ ARK FD + E++ +++NA++ GYA+  KS EA  LF+ +    + +
Sbjct: 376 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI 435

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S+LS    +GA+ +G   H  + +   K    +  AL+ MYS+CGN+  A   F
Sbjct: 436 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 495

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M++RNV +WTS+I G A +G   ++LE+F  M + G +PNE+T+V+VL  C  VG++ 
Sbjct: 496 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 555

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG++HF+SM +E+GI P +EHY C+VDL GR+G L EA++ IN MP+   A  W  LL A
Sbjct: 556 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 615

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR++ NTE+G  A+  ++E E  +  AY+LLSN++A +  W  V+ +R+ MK + + K  
Sbjct: 616 CRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEA 675

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           GCS IEV+  VH F  G+ +HP+  +I   L +++ ++K  GY+ +T+ V++DIEEE+KE
Sbjct: 676 GCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKE 735

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L +HSEK+A+AFGLIS  +  PIRI KNLRVC DCH   K IS    REI+VRD NRF
Sbjct: 736 QFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRF 795

Query: 448 HHFKEGKCSCKGYW 461
           HH K G CSC  YW
Sbjct: 796 HHIKNGVCSCNDYW 809



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 135/253 (53%), Gaps = 14/253 (5%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAK-CGDVDLARKMFDEMPERDPIAWNAM 60
           YA +G + Y   V  G  E DV     +I    K  GD+  A K+FD+MPER+ + W  M
Sbjct: 143 YAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLM 202

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +  +AQ G +R+A+ LF  M++     +  +  SVLSACT LG L  G+  H  + R  L
Sbjct: 203 ITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGL 262

Query: 121 KMTVTLGTALVDMYSKC---GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK-SLE 176
            + V +G +LVDMY+KC   G+++ +   F  M E NV +WT++I     +G  +K ++E
Sbjct: 263 ALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIE 322

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC----L 232
           LF  M    +RPN  +F SVL+ C  +     G + +      Y ++  +    C    L
Sbjct: 323 LFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY-----SYAVKLGIASVNCVGNSL 377

Query: 233 VDLYGRAGRLDEA 245
           + +Y R+GR+++A
Sbjct: 378 ISMYARSGRMEDA 390



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDVKL 87
           M + CA  G VD +RK+F++MPE + ++W A++  Y Q G+  +EA+ LF  M    ++ 
Sbjct: 275 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRP 334

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  S  SVL AC +L     G   + Y  +  +     +G +L+ MY++ G M  A   F
Sbjct: 335 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 394

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + E+N+ ++ +++ G A N   E++  LF+ +   G+  +  TF S+L G   +G + 
Sbjct: 395 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 454

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +G + H   ++  Y     +     L+ +Y R G ++ A  V N+M
Sbjct: 455 KGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEM 498



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 12/256 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFH 78
           E D V    +IS  +KCGD + AR +F+ M  +RD ++W+AM++ +A      +A+  F 
Sbjct: 58  ELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFL 117

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSK- 136
            M       NE    +V+ AC++      G   + ++ +   L+  V +G  L+DM+ K 
Sbjct: 118 DMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKG 177

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G++  A   F  M ERN+ TWT +I   A  G    +++LF  M+ +G  P+  T+ SV
Sbjct: 178 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 237

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRA---GRLDEALDVINK 251
           L  C  +GL+  G++ H   +R    ++  +   GC LVD+Y +    G +D++  V  +
Sbjct: 238 LSACTELGLLALGKQLHSRVIRLGLALDVCV---GCSLVDMYAKCAADGSVDDSRKVFEQ 294

Query: 252 MPMKPHAGAWGALLNA 267
           MP + +  +W A++ A
Sbjct: 295 MP-EHNVMSWTAIITA 309



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+   A     LM   +   +  +   +L +C        G+  H  + ++ L++   + 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 128 TALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
             L+ +YSKCG+   A   F GM  +R++ +W++++   A N    +++  F  M + G 
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGR-AGRLDE 244
            PNE  F +V+R C        G   +  + +   +E  +   GC L+D++ + +G L  
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADV-CVGCELIDMFVKGSGDLGS 183

Query: 245 ALDVINKMP 253
           A  V +KMP
Sbjct: 184 AYKVFDKMP 192


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/425 (45%), Positives = 284/425 (66%), Gaps = 1/425 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +  Q +++   A CGDV  A K+FD+MPE+D +AWN+++ G+A+ GK  EAL L+  M  
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K +  ++VS+LSAC  +GAL  G+  HVY+ +  L   +     L+D+Y++CG + +
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCC 201
           A   F  M ++N  +WTS+I GLA+NG G++++ELF  M+   G+ P E+TFV +L  C 
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G+V+EG E+F  MR EY IEP +EH+GC+VDL  RAG++ +A + I  MPM+P+   W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL AC ++ ++++ E A  ++++LE  + G YVLLSN+YA  + W  V  +R+ M   
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK+PG S++EV   VHEF  GD++HP+ + I   L E++ RL+  GYV   + V  D+
Sbjct: 456 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 515

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE+ +  HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SKV+NREI+V
Sbjct: 516 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 575

Query: 442 RDRNR 446
           RDR+R
Sbjct: 576 RDRSR 580



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 42  ARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLS 97
           A K+F ++    PI    WN ++ GYA+ G S  A  L+  M++   V+ +  +   ++ 
Sbjct: 72  AHKVFSKI--EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
           A T +  +  G   H  + R+     + +  +L+ +Y+ CG++  A   F  M E+++  
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           W SVI G A NG  E++L L++ M   G++P+  T VS+L  C  +G +  G+     M 
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +  G+   L     L+DLY R GR++EA  + ++M  K ++ +W +L+
Sbjct: 250 K-VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLI 295


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/440 (43%), Positives = 278/440 (63%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   +++I   A C  +D + K+FD   + D + WN+MLAGYAQ G   EAL +F  M 
Sbjct: 204 DVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRML 263

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+   V+  S++ A  +L  L  G+  H Y+ R R    + + ++L+DMY KCGN++
Sbjct: 264 QAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVD 323

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F G++  ++ +WT++I G A++G   ++  LF  M+   V+PN +TF++VL  C 
Sbjct: 324 IARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACS 383

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+ G ++F+SM  +YG  P LEH   L D  GRAG LDEA + I++M +KP +  W
Sbjct: 384 HAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVW 443

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL ACR++KNT + E  ++K+ ELE K+ G++V+LSN+Y+ S  W+    +R+ M+ K
Sbjct: 444 STLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIK 503

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK P CS IEV  ++H F A D++HP Y+ I   L   S ++   GYV N   V+ DI
Sbjct: 504 GMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDI 563

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE+K + LC HSEK+AI FG+IS   G  IR++KNLRVC DCH  TK ISK+  REI+V
Sbjct: 564 EEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVV 623

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH FK+G CSC  +W
Sbjct: 624 RDVNRFHRFKDGNCSCGDFW 643



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           RK+FDEM ERD ++WN ++ G A+  + +EAL +   M       +  ++ +VL      
Sbjct: 124 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 183

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
             + +G   H Y  +N     V +G++L+DMY+ C  M+ +M  F    + +   W S++
Sbjct: 184 ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSML 243

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYG 221
            G A NG+ E++L +F  M QAGVRP  VTF S++     + L+  G++ H   +R  + 
Sbjct: 244 AGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN 303

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              ++     L+D+Y + G +D A  V N +   P   +W A++
Sbjct: 304 DNIFIS--SSLIDMYCKCGNVDIARRVFNGI-QSPDIVSWTAMI 344


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/465 (43%), Positives = 284/465 (61%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MY + G      +VFD     DV    A+I+  ++   V  A ++F E  +R    + ++
Sbjct: 201 MYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVS 260

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W +++A   Q GK  EA+  F  MQ    + N V++  VL A  ++ AL  GR AH +  
Sbjct: 261 WTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFAL 320

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R      V + +ALVDMY+KCG +  A   F  M  RNV +W ++IGG AM G    ++ 
Sbjct: 321 RKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVW 380

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F  M +   +P+ VTF  +L  C   GL EEGR +F  M  EYG+ P +EHY C+V L 
Sbjct: 381 MFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLL 440

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG+LDEA D+I+ MP +P A  WG+LL +CR++ N ++ E+A+ KL  LE +N G YV
Sbjct: 441 GRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYV 500

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LLSNIYA  K WDRV  VR++MK  G+KK  GCS IE+  +VH   AGD++HP    I  
Sbjct: 501 LLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIE 560

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            + +++ +++  G+V +T+ V++D+EE+EK+D L  HSEK+A+A GLIS   G  +R++K
Sbjct: 561 KINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIK 620

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH+  K IS    REI VRD NRFHHF  GKCSC  +W
Sbjct: 621 NLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 47/314 (14%)

Query: 2   YAELGCLGYCQKVFDGIHEPD--VVCQTAMISACAKCGDVDLARKMFDEMP-----ERDP 54
           Y  LG  G  + +FDG+  P   VV  +A+++A A  GD + A ++ +EM      E + 
Sbjct: 62  YLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNV 121

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS-VLSACTHLGALDQGRWAHV 113
           I WN +++G  + G++R+A+     M    +   + + VS  LSA   +G +  G+  H 
Sbjct: 122 ITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHG 181

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF---------------WGMK------- 151
           Y  +   +    + TAL+DMY KCG   + +  F                G+        
Sbjct: 182 YAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCE 241

Query: 152 -------------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
                        E NV +WTS++     NG   +++E F  M+  G  PN VT   VL 
Sbjct: 242 ALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLP 301

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               V  +  GR  H  ++R+ +  + ++     LVD+Y + GR+ +A  + + M +  +
Sbjct: 302 AFANVAALMHGRSAHCFALRKGFLHDVYVS--SALVDMYAKCGRVKDARIIFDTM-VSRN 358

Query: 258 AGAWGALLNACRMY 271
             +W A++    MY
Sbjct: 359 VVSWNAMIGGYAMY 372



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 17/208 (8%)

Query: 54  PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
           P   + +   +  C     A  L  + ++  +  +     S+L A   LG     R   +
Sbjct: 17  PPDPHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNAR--AL 74

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-----ERNVYTWTSVIGGLAMN 168
           +    R + TV   +ALV  ++  G+   A      M+     E NV TW  ++ GL  +
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 169 GAGEKSLELFSLMKQAGV-RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
           G    ++   + M   G+ RP+       L     VGLV  G++        Y ++    
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQ-----LHGYAVKAGCR 189

Query: 228 HYGC----LVDLYGRAGRLDEALDVINK 251
              C    L+D+YG+ G+  E + V ++
Sbjct: 190 ADACVVTALIDMYGKCGQAAEVVRVFDE 217


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/455 (44%), Positives = 299/455 (65%), Gaps = 4/455 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCG 68
           +CQ + +G  + D+  +TA++ A +KC ++D A K+F  M   ++ ++W A+++GY Q G
Sbjct: 317 HCQVIKNG-SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNG 375

Query: 69  KSREALHLFHLMQIHD-VKLNEVSMVSVLSACTH-LGALDQGRWAHVYIERNRLKMTVTL 126
           ++  A++LF  M+  + V+ NE +  SVL+AC     +++QG+  H    ++     + +
Sbjct: 376 RTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCV 435

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            +ALV MY+K GN+  A + F    +R++ +W S+I G A +G G+KSL++F  M+   +
Sbjct: 436 SSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNL 495

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
             + +TF+ V+  C   GLV EG+ +FD M ++Y I P +EHY C+VDLY RAG L++A+
Sbjct: 496 ELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM 555

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
           D+INKMP    A  W  LL ACR++ N ++GELA+ KL+ L+ ++  AYVLLSNIYA + 
Sbjct: 556 DLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAG 615

Query: 307 NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
           NW     VR++M  K VKK  G S IEV  +   F AGD +HP+ + I + L E+S RLK
Sbjct: 616 NWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLK 675

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
            AGY  +T  V++D+EEE KE  L +HSE++AIAFGLI+   G PI+IVKNLRVC DCH 
Sbjct: 676 DAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHT 735

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           V K+ISK+  R+I+VRD NRFHHFK G CSC  YW
Sbjct: 736 VIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 4/259 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ +  G  E DV   T+++    K   V+   ++FDEM  ++ ++W ++LAGY Q G 
Sbjct: 115 HCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGL 173

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + +AL LF  MQ+  +K N  +  +VL      GA+++G   H  + ++ L  T+ +G +
Sbjct: 174 NEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           +V+MYSK   ++ A   F  M+ RN  +W S+I G   NG   ++ ELF  M+  GV+  
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLT 293

Query: 190 EVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           +  F +V++ C  +  +   ++ H   ++   G +  L     L+  Y +   +D+A  +
Sbjct: 294 QTIFATVIKLCANIKEMSFAKQLHCQVIKN--GSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 249 INKMPMKPHAGAWGALLNA 267
              M    +  +W A+++ 
Sbjct: 352 FCMMHGVQNVVSWTAIISG 370



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           ++++FDE P++     N +L  +++  +++EAL+LF  ++      +  S+  VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L     G+  H    +      V++GT+LVDMY K  ++      F  M+ +NV +WTS+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           + G   NG  E++L+LFS M+  G++PN  TF +VL G    G VE+G +   +M  + G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++  +     +V++Y ++  + +A  V + M  + +A +W +++
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMI 266


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/434 (44%), Positives = 284/434 (65%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++IS  A+ G ++ ARK FD + E++ +++NA++ GYA+  KS EA  LF+ +    + +
Sbjct: 394 SLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI 453

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S+LS    +GA+ +G   H  + +   K    +  AL+ MYS+CGN+  A   F
Sbjct: 454 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 513

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M++RNV +WTS+I G A +G   ++LE+F  M + G +PNE+T+V+VL  C  VG++ 
Sbjct: 514 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 573

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG++HF+SM +E+GI P +EHY C+VDL GR+G L EA++ IN MP+   A  W  LL A
Sbjct: 574 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 633

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR++ NTE+G  A+  ++E E  +  AY+LLSN++A +  W  V+ +R+ MK + + K  
Sbjct: 634 CRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEA 693

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           GCS IEV+  VH F  G+ +HP+  +I   L +++ ++K  GY+ +T+ V++DIEEE+KE
Sbjct: 694 GCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKE 753

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L +HSEK+A+AFGLIS  +  PIRI KNLRVC DCH   K IS    REI+VRD NRF
Sbjct: 754 QFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRF 813

Query: 448 HHFKEGKCSCKGYW 461
           HH K G CSC  YW
Sbjct: 814 HHIKNGVCSCNDYW 827



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 135/253 (53%), Gaps = 14/253 (5%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAK-CGDVDLARKMFDEMPERDPIAWNAM 60
           YA +G + Y   V  G  E DV     +I    K  GD+  A K+FD+MPER+ + W  M
Sbjct: 161 YAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLM 220

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +  +AQ G +R+A+ LF  M++     +  +  SVLSACT LG L  G+  H  + R  L
Sbjct: 221 ITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGL 280

Query: 121 KMTVTLGTALVDMYSKC---GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK-SLE 176
            + V +G +LVDMY+KC   G+++ +   F  M E NV +WT++I     +G  +K ++E
Sbjct: 281 ALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIE 340

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC----L 232
           LF  M    +RPN  +F SVL+ C  +     G + +      Y ++  +    C    L
Sbjct: 341 LFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSL 395

Query: 233 VDLYGRAGRLDEA 245
           + +Y R+GR+++A
Sbjct: 396 ISMYARSGRMEDA 408



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDVKL 87
           M + CA  G VD +RK+F++MPE + ++W A++  Y Q G+  +EA+ LF  M    ++ 
Sbjct: 293 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRP 352

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  S  SVL AC +L     G   + Y  +  +     +G +L+ MY++ G M  A   F
Sbjct: 353 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 412

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + E+N+ ++ +++ G A N   E++  LF+ +   G+  +  TF S+L G   +G + 
Sbjct: 413 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 472

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +G + H   ++  Y     +     L+ +Y R G ++ A  V N+M
Sbjct: 473 KGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEM 516



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 12/256 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFH 78
           E D V    +IS  +KCGD + AR +F+ M  +RD ++W+AM++ +A      +A+  F 
Sbjct: 76  ELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFL 135

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSK- 136
            M       NE    +V+ AC++      G   + ++ +   L+  V +G  L+DM+ K 
Sbjct: 136 DMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKG 195

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G++  A   F  M ERN+ TWT +I   A  G    +++LF  M+ +G  P+  T+ SV
Sbjct: 196 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 255

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRA---GRLDEALDVINK 251
           L  C  +GL+  G++ H   +R    ++  +   GC LVD+Y +    G +D++  V  +
Sbjct: 256 LSACTELGLLALGKQLHSRVIRLGLALDVCV---GCSLVDMYAKCAADGSVDDSRKVFEQ 312

Query: 252 MPMKPHAGAWGALLNA 267
           MP + +  +W A++ A
Sbjct: 313 MP-EHNVMSWTAIITA 327



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           G+   A     LM   +   +  +   +L +C        G+  H  + ++ L++   + 
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 128 TALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
             L+ +YSKCG+   A   F GM  +R++ +W++++   A N    +++  F  M + G 
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGR-AGRLDE 244
            PNE  F +V+R C        G   +  + +   +E  +   GC L+D++ + +G L  
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADV-CVGCELIDMFVKGSGDLGS 201

Query: 245 ALDVINKMP 253
           A  V +KMP
Sbjct: 202 AYKVFDKMP 210


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/438 (43%), Positives = 281/438 (64%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +   A++   AK G  D A  +F++M ++D I+W +++ G    G   EAL LF  M+I 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            +  +++ + +VLSAC  L  L+ G+  H    ++ L  ++++  +LV MY+KCG +  A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M+ ++V TWT++I G A NG G +SL  ++ M  +GV+P+ +TF+ +L  C   
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GLVE GR +F SM   YGI+P  EHY C++DL GR+G+L EA +++N+M ++P A  W A
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR++ N E+GE A+  L ELE KN   YVLLSN+Y+ +  W+     R++MK +GV
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
            K PGCS IE+  +VH F + D +HPR  EI   + EI   +K AGYV + N  ++D++E
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           E KE  L  HSEK+A+AFGL+++  G PIRI KNLR+C DCH   K +S VF+R +I+RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 444 RNRFHHFKEGKCSCKGYW 461
            N FHHF+EG CSC  YW
Sbjct: 423 SNCFHHFREGACSCSDYW 440


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/453 (42%), Positives = 292/453 (64%), Gaps = 3/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  + +G+   D+V +  +I    +CG+V  + KMF+ + ++D + W +M+  YA  G 
Sbjct: 490 HCYAIRNGL--LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGL 547

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  MQ  DV+ + V++VS+L A   L +L +G+  H ++ R    M   + ++
Sbjct: 548 LNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSS 607

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LVDMYS CG+++ A+  F  +K +++  WT++I    M+G G+++++LF  M Q GV P+
Sbjct: 608 LVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPD 667

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            V+F+++L  C    LV EG+ + D M   Y +EPW EHY C+VDL GR+G+ +EA + I
Sbjct: 668 HVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFI 727

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
             MP+KP +  W +LL ACR++KN E+  +A+ +L+ELE  N G YVL+SN++AE   W+
Sbjct: 728 KSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWN 787

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL-KLA 368
               VR  +  +G++K P CS IE+   VH F   D +H     I + L EI+ RL K  
Sbjct: 788 NAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEG 847

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GY  +T  V++D+ EEEK D L +HSE++AI+FGLI+ + G+P+RI KNLRVC DCH+ T
Sbjct: 848 GYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFT 907

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K++SK+F+R+I+VRD NRFHHF  G CSC  +W
Sbjct: 908 KLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 136/263 (51%), Gaps = 7/263 (2%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGY 64
           GC  +   V  G+     V   A+I+  AKCG +D A ++F+ M + RD  +WN+M++G 
Sbjct: 183 GCEVHGLAVKHGLDRSTFVAN-ALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            Q G   +AL LF  MQ   + +N  + V VL  CT L  L+ GR  H  + ++  ++ +
Sbjct: 242 LQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNI 301

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
                LV MY+KCG ++ A+  F  + E++  +W S++     NG   +++E  S M + 
Sbjct: 302 QCNALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRG 360

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           G +P+    VS+      +G +  G+E H  ++++    +  + +   L+D+Y +   ++
Sbjct: 361 GFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGN--TLMDMYMKCRYIE 418

Query: 244 EALDVINKMPMKPHAGAWGALLN 266
            +  V ++M +K H  +W  ++ 
Sbjct: 419 YSAHVFDRMRIKDHI-SWTTIIT 440



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 7/249 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    T ++    KCG V  AR +FD M  R   +WNA++  Y   G + EAL ++  M+
Sbjct: 94  DGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMR 153

Query: 82  I---HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           +     V  +  ++ SVL A    G    G   H    ++ L  +  +  AL+ MY+KCG
Sbjct: 154 LSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCG 213

Query: 139 NMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
            ++ AM  F  M + R+V +W S+I G   NG   ++L+LF  M++A +  N  T V VL
Sbjct: 214 ILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVL 273

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           + C  +  +  GRE   ++ +  G E  ++    LV +Y + GR+D AL V  ++  K +
Sbjct: 274 QVCTELAQLNLGRELHAALLKS-GSEVNIQCNALLV-MYTKCGRVDSALRVFREIDEKDY 331

Query: 258 AGAWGALLN 266
             +W ++L+
Sbjct: 332 I-SWNSMLS 339



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 134/272 (49%), Gaps = 7/272 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++ C  A++    KCG VD A ++F E+ E+D I+WN+ML+ Y Q G   EA+     
Sbjct: 298 EVNIQCN-ALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISE 356

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M     + +   +VS+ SA  HLG L  G+  H Y  + RL     +G  L+DMY KC  
Sbjct: 357 MLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRY 416

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  +   F  M+ ++  +WT++I   A +    ++LE+F   ++ G++ + +   S+L  
Sbjct: 417 IEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEA 476

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  +   ++      R   ++  +++   ++D+YG  G +  +L +   +  K    
Sbjct: 477 CSGLETILLAKQLHCYAIRNGLLDLVVKNR--IIDIYGECGEVYHSLKMFETVEQKDIV- 533

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKN 291
            W +++N    Y N+ +   A     E+++ +
Sbjct: 534 TWTSMINC---YANSGLLNEALVLFAEMQSTD 562



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK--- 182
           L T L+ MY KCG +  A   F GM  R V++W ++IG    +G+  ++L ++  M+   
Sbjct: 97  LATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSA 156

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            +GV P+  T  SVL+   V G    G E    +  ++G++        L+ +Y + G L
Sbjct: 157 ASGVAPDGCTLASVLKASGVEGDGRCGCE-VHGLAVKHGLDRSTFVANALIAMYAKCGIL 215

Query: 243 DEALDVINKMPMKPHAGAWGALLNAC 268
           D A+ V   M       +W ++++ C
Sbjct: 216 DSAMRVFELMHDGRDVASWNSMISGC 241


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/441 (44%), Positives = 290/441 (65%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+V Q  ++    +CG+VD A +MF+ +  +D ++W +M++ Y   G + EAL LFHLM+
Sbjct: 517 DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK 576

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ + +S+VS+LSA   L AL +G+  H ++ R    +  +L + LVDMY++CG + 
Sbjct: 577 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLE 636

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           K+ + F  ++ +++  WTS+I    M+G G  +++LF  M+   + P+ + FV+VL  C 
Sbjct: 637 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL+ EGR   +SM+ EY +EPW EHY CLVDL GRA  L+EA   +  M ++P A  W
Sbjct: 697 HSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 756

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL AC+++ N E+GE+A++KL+E++ +N G YVL+SN+Y+  + W  V  VR  MKA 
Sbjct: 757 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKAS 816

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL-KLAGYVANTNPVMYD 380
           G+KK PGCS IEV  +VH F A D++HP+  EI   L +I+ +L K  GYVA T  V+++
Sbjct: 817 GLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHN 876

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            +EEEK   L  HSE++AIA+G+++  EG  +RI KNLRVC DCH+  K+ISK F RE++
Sbjct: 877 AKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELV 936

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NRFHHFK G CSC   W
Sbjct: 937 MRDANRFHHFKGGVCSCGDVW 957



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 156/300 (52%), Gaps = 40/300 (13%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGD--------------------------VDL 41
           L +  ++ D   +PD+V   ++I+A A+ G+                          VD+
Sbjct: 368 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDM 427

Query: 42  ARK---------MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92
             K         +FD+MP++D ++W  ++AG+AQ G    AL LF  +Q+  + L+ + +
Sbjct: 428 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMI 487

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
            S+L AC+ L  +   +  H YI R  L   + L   +VD+Y +CGN++ A   F  ++ 
Sbjct: 488 SSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEF 546

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           ++V +WTS+I     NG   ++LELF LMK+ GV P+ ++ VS+L     +  +++G+E 
Sbjct: 547 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEI 606

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           H   +R+ + +E  L     LVD+Y R G L+++ +V N +  K     W +++NA  M+
Sbjct: 607 HGFLIRKGFVLEGSLA--STLVDMYARCGTLEKSRNVFNFIRNKDLV-LWTSMINAYGMH 663



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 4/235 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           V    +++    KC D++ AR++FD MPE+ D ++WN+M++ Y+  G+S EAL LF  MQ
Sbjct: 215 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 274

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  N  + V+ L AC     + QG + H  + ++   + V +  AL+ MY++ G M 
Sbjct: 275 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMG 334

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F+ M + +  +W S++ G   NG   ++L+ +  M+ AG +P+ V  +S++    
Sbjct: 335 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 394

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             G    G + H  +M+   G++  L+    LVD+Y +   +     + +KMP K
Sbjct: 395 RSGNTLHGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK 447



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    A+I+  A+ G +  A  +F  M + D I+WN+ML+G+ Q G   EAL  +H M+
Sbjct: 316 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 375

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K + V+++S+++A    G    G   H Y  +N L   + +G +LVDMY+K  +M 
Sbjct: 376 DAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM- 434

Query: 142 KAMD-FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           K MD  F  M +++V +WT++I G A NG+  ++LELF  ++  G+  + +   S+L  C
Sbjct: 435 KYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLAC 494

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
             + L+   +E    + R+ G+   +   G +VD+YG  G +D A
Sbjct: 495 SGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGECGNVDYA 537



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            V   T ++    KCG +  A K+FD MP +    WNAM+  Y   G+   +L L+  M+
Sbjct: 113 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 172

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  + L+  +   +L AC  L     G   H    +      V +  ++V MY+KC ++N
Sbjct: 173 VSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 232

Query: 142 KAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            A   F  M E+ +V +W S+I   + NG   ++L LF  M++A + PN  TFV+ L+ C
Sbjct: 233 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 292

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
                +++G   H   ++  Y I  ++ +   L+ +Y R G++ EA ++   M
Sbjct: 293 EDSSFIKQGMFIHATVLKSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNM 343



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 94  SVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           SVL  C    AL +G+  H + I  N L  +V L T LV MY KCG +  A   F GM  
Sbjct: 83  SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 142

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           + ++TW ++IG    NG    SLEL+  M+ +G+  +  TF  +L+ C ++     G E 
Sbjct: 143 KTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEV 202

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           H  +++  Y    ++ +   +V +Y +   L+ A  + ++MP K    +W ++++A
Sbjct: 203 HGLAIKEGYVSIVFVAN--SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 290/441 (65%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+V Q  ++    +CG+VD A +MF+ +  +D ++W +M++ Y   G + EAL LFHLM+
Sbjct: 553 DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK 612

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ + +S+VS+LSA   L AL +G+  H ++ R    +  +L + LVDMY++CG + 
Sbjct: 613 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLE 672

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           K+ + F  ++ +++  WTS+I    M+G G  +++LF  M+   + P+ + FV+VL  C 
Sbjct: 673 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL+ EGR   +SM+ EY +EPW EHY CLVDL GRA  L+EA   +  M ++P A  W
Sbjct: 733 HSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 792

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL AC+++ N E+GE+A++KL+E++ +N G YVL+SN+YA  + W  V  VR  MKA 
Sbjct: 793 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKAS 852

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL-KLAGYVANTNPVMYD 380
           G+KK PGCS IEV  +VH F A D++HP+  EI   L +I+ +L K  GYVA T  V+++
Sbjct: 853 GLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHN 912

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            +EEEK   L  HSE++AIA+G+++  EG  +RI KNLRVC DCH+  K+ISK F RE++
Sbjct: 913 AKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELV 972

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NRFHHFK G CSC   W
Sbjct: 973 MRDANRFHHFKGGVCSCGDVW 993



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 156/300 (52%), Gaps = 40/300 (13%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGD--------------------------VDL 41
           L +  ++ D   +PD+V   ++I+A A+ G+                          VD+
Sbjct: 404 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDM 463

Query: 42  ARK---------MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92
             K         +FD+MP++D ++W  ++AG+AQ G    AL LF  +Q+  + L+ + +
Sbjct: 464 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMI 523

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
            S+L AC+ L  +   +  H YI R  L   + L   +VD+Y +CGN++ A   F  ++ 
Sbjct: 524 SSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEF 582

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           ++V +WTS+I     NG   ++LELF LMK+ GV P+ ++ VS+L     +  +++G+E 
Sbjct: 583 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEI 642

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           H   +R+ + +E  L     LVD+Y R G L+++ +V N +  K     W +++NA  M+
Sbjct: 643 HGFLIRKGFVLEGSLA--STLVDMYARCGTLEKSRNVFNFIRNKDLV-LWTSMINAYGMH 699



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 4/235 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           V    +++    KC D++ AR++FD MPE+ D ++WN+M++ Y+  G+S EAL LF  MQ
Sbjct: 251 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 310

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  N  + V+ L AC     + QG + H  + ++   + V +  AL+ MY++ G M 
Sbjct: 311 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMG 370

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F+ M + +  +W S++ G   NG   ++L+ +  M+ AG +P+ V  +S++    
Sbjct: 371 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 430

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             G    G + H  +M+   G++  L+    LVD+Y +   +     + +KMP K
Sbjct: 431 RSGNTLNGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK 483



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    A+I+  A+ G +  A  +F  M + D I+WN+ML+G+ Q G   EAL  +H M+
Sbjct: 352 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 411

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K + V+++S+++A    G    G   H Y  +N L   + +G +LVDMY+K  +M 
Sbjct: 412 DAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM- 470

Query: 142 KAMD-FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           K MD  F  M +++V +WT++I G A NG+  ++LELF  ++  G+  + +   S+L  C
Sbjct: 471 KYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLAC 530

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
             + L+   +E    + R+ G+   +   G +VD+YG  G +D A
Sbjct: 531 SGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGECGNVDYA 573



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            V   T ++    KCG +  A K+FD MP +    WNAM+  Y   G+   +L L+  M+
Sbjct: 149 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 208

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  + L+  +   +L AC  L     G   H    +      V +  ++V MY+KC ++N
Sbjct: 209 VSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 268

Query: 142 KAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            A   F  M E+ +V +W S+I   + NG   ++L LF  M++A + PN  TFV+ L+ C
Sbjct: 269 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 328

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
                +++G   H   ++  Y I  ++ +   L+ +Y R G++ EA ++   M
Sbjct: 329 EDSSFIKQGMFIHATVLKSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNM 379



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 94  SVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           SVL  C    AL +G+  H + I  N L  +V L T LV MY KCG +  A   F GM  
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 178

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-- 210
           + ++TW ++IG    NG    SLEL+  M+ +G+  +  TF  +L+ C   GL+++ R  
Sbjct: 179 KTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLLKDRRCG 235

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
                +  + G    +     +V +Y +   L+ A  + ++MP K    +W ++++A
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 287/444 (64%), Gaps = 1/444 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DVV  TA++S   +C     A K+F +M  +D I W  M   YAQ G  +EAL LF 
Sbjct: 339 YDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ 398

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ+   +    ++V+VL  C HL AL +GR  H +I  N  +M + + TAL++MY KCG
Sbjct: 399 EMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCG 458

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M +A   F  M +R++  W S++G  A +G  +++L+LF+ M+  G + + V+FVSVL 
Sbjct: 459 KMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLS 518

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP-MKPH 257
                G V +G ++F +M +++ I P  E YGC+VDL GRAGR+ EA+D++ K+    P 
Sbjct: 519 ALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPD 578

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              W  LL ACR +  T+  + A+ +++E +  + GAYV+LSN+YA + +WD V  +R++
Sbjct: 579 GILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKL 638

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M+++GVKK PG S IE+   VHEF  GD +HPR + I   L  ++  ++ AGY+ +T  +
Sbjct: 639 MRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMI 698

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++D+E+E KED L  HSE++AIAFGL+S   G P+R++KNLRVC DCH  TK ISK+  R
Sbjct: 699 LHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGR 758

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EI+VRD +RFH+FK+G+CSCK YW
Sbjct: 759 EILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 131/251 (52%), Gaps = 4/251 (1%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           + E DV    + ++     G +  AR++F++M +RD + WN ++  Y Q     EA+ LF
Sbjct: 237 VMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLF 296

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             +Q   +K N+++ V +L+  T L +L +G+  H  ++       V + TAL+ +Y +C
Sbjct: 297 GRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRC 356

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
               +A   F  M  ++V TWT +    A NG  +++L+LF  M+  G RP   T V+VL
Sbjct: 357 EAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVL 416

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +  +++GR+ H   +   + +E  +E    L+++YG+ G++ EA  V  KM  K 
Sbjct: 417 DTCAHLAALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARSVFEKMA-KR 473

Query: 257 HAGAWGALLNA 267
               W ++L A
Sbjct: 474 DILVWNSMLGA 484



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 10/313 (3%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  + ++VC   +I   A+CG V  A+++F+ +  +D  AW  M+  Y Q G    AL +
Sbjct: 35  GFEQNNLVC-GHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGM 93

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F+ MQ  DV   +V+ V++L+AC    +L  G   H  I +   +  V +GTAL++MY+K
Sbjct: 94  FYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNK 153

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A D F  ++ R+V +WT++I     +     +  L+  M+  GV PN++T  +V
Sbjct: 154 CGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTV 213

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
                    + EG+  + S+     +E  +      ++++G AG L +A  +   M +  
Sbjct: 214 FNAYGDPHYLSEGKFIY-SLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDR 271

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETK----NHGAYVLLSNIYAESKNWDRVI 312
               W  ++      +N   GE A R    L+      N   +VL+ N+Y    +  +  
Sbjct: 272 DVVTWNIVITF--YVQNENFGE-AVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGK 328

Query: 313 NVRQIMKAKGVKK 325
            + +++K  G  +
Sbjct: 329 VIHELVKEAGYDR 341


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/438 (43%), Positives = 280/438 (63%), Gaps = 5/438 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-- 84
           +I   AKC  VD+AR MFD +   ERD + W  M+ GY+Q G + +AL L   M   D  
Sbjct: 413 LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK-MTVTLGTALVDMYSKCGNMNKA 143
            + N  ++   L AC  L AL  G+  H Y  RN+   + + +   L+DMY+KCG++  A
Sbjct: 473 TRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDA 532

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M E+N  TWTS++ G  M+G GE++L +F  M++ G + + VT + VL  C   
Sbjct: 533 RLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHS 592

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G++++G E+F+ M+ ++G+ P  EHY CLVDL GRAGRL+ AL +I +MPM+P    W A
Sbjct: 593 GMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVA 652

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL+ CR++   E+GE A++K+ EL + N G+Y LLSN+YA +  W  V  +R +M+ KG+
Sbjct: 653 LLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGI 712

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           KK PGCS +E  +    FF GD+THP   EI  +L +  +R+K  GYV  T   ++D+++
Sbjct: 713 KKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDD 772

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           EEK+D L +HSEK+A+A+G+++  +G  IRI KNLRVC DCH     +S++ + EII+RD
Sbjct: 773 EEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRD 832

Query: 444 RNRFHHFKEGKCSCKGYW 461
            +RFHHFK G CSCKGYW
Sbjct: 833 SSRFHHFKNGLCSCKGYW 850



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 18/287 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MYA+ G +     VF  +   DVV   AM++  ++ G  + A ++F++M E     D + 
Sbjct: 273 MYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVT 332

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-- 114
           W+A ++GYAQ G   EAL +   M    +K NEV+++SVLS C  +GAL  G+  H Y  
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 115 -----IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
                + +N       +   L+DMY+KC  ++ A   F  +  KER+V TWT +IGG + 
Sbjct: 393 KYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQ 452

Query: 168 NGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
           +G   K+LEL S M  +    RPN  T    L  C  +  +  G++ H  ++R +    P
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVP 512

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            L    CL+D+Y + G + +A  V + M M+ +   W +L+    M+
Sbjct: 513 -LFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMH 557



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 136/278 (48%), Gaps = 46/278 (16%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    A+++  ++CG +  ARK+FDEMP  D ++WN+++  YA+ GK + AL +F  M 
Sbjct: 161 NVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMT 220

Query: 82  IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                + +++++V+VL  C  +G    G+  H +   + +   + +G  LVDMY+K G M
Sbjct: 221 NEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMM 280

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ----------------- 183
           ++A   F  M  ++V +W +++ G +  G  E ++ LF  M++                 
Sbjct: 281 DEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGY 340

Query: 184 ------------------AGVRPNEVTFVSVLRGCCVVGLVEEGRE--------HFDSMR 217
                             +G++PNEVT +SVL GC  VG +  G+E          D  +
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRK 400

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             +G E  + +   L+D+Y +  ++D A  + + +  K
Sbjct: 401 NGHGDENMVINQ--LIDMYAKCKKVDIARAMFDSLSPK 436



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +IS     G +  A  +    P  D     WN+++  Y   G++ + L  F LM      
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   V  AC  + ++  G  +H           V +G ALV MYS+CG+++ A   
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGL 205
           F  M   +V +W S+I   A  G  + +LE+FS M  + G RP+++T V+VL  C  VG 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
              G++ H  ++  E     ++ +  CLVD+Y + G +DEA  V + MP+K    +W A+
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGN--CLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAM 301

Query: 265 L 265
           +
Sbjct: 302 V 302


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/472 (42%), Positives = 297/472 (62%), Gaps = 12/472 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   ++VF  ++E +VV  + ++    K   V+  R +FDEMPER+ + W  M
Sbjct: 166 MYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIM 225

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY   G SRE   L   M +   + LN V++ S+LSAC   G +  GRW HVY  +  
Sbjct: 226 IAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGM 285

Query: 120 LK-MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            + M + +GTALVDMY+KCG ++ A   F  + +RNV  W +++GGLAM+G G+  L++F
Sbjct: 286 GREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIF 345

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M +   +P+++TF++VL  C   GLV++G  +F S+  EYG  P +EHY C+VD+ GR
Sbjct: 346 PKMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGR 404

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG L+EA+ +I KMPM P+    G+LL +C  +   ++GE   ++L++++  N   +VLL
Sbjct: 405 AGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLL 464

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SN+Y      D+  ++RQI+K+KG++K+PG S I V   +H+F AGD++HP   EI   L
Sbjct: 465 SNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHAL 524

Query: 359 GEISRRLKLAGYVANTNPVMY---------DIEEEEKEDTLCKHSEKVAIAFGLISLKEG 409
             + +RL+LAGYV NT   ++           E EEKE  L  HSEK+A+ FG IS K G
Sbjct: 525 NNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPG 584

Query: 410 VPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            P+ I KNLR+C DCH   K++SK++NREI++RDRNRFH FK G CSC  YW
Sbjct: 585 APLYIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 121/287 (42%), Gaps = 36/287 (12%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCG-KSREALHL 76
            P+     A+    A CG    AR +F ++P   +D   W  +L    Q G K  E    
Sbjct: 50  SPNTFLLNALHHLYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFF 109

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M+   V L++V+M+SV   CT +  L  GR A   + +  L + V +  A+++MY K
Sbjct: 110 FKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVK 169

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAM-----NG---------------------- 169
           CG + +    F  M ERNV +W++++ G+       NG                      
Sbjct: 170 CGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGY 229

Query: 170 -AGEKSLELFSLMKQAGVR----PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
                S E F L+ +  +R     N VT  S+L  C   G V  GR       +  G E 
Sbjct: 230 VGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREM 289

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            +     LVD+Y + G +D A  V   +P K +  AW A+L    M+
Sbjct: 290 HIMVGTALVDMYAKCGPIDMAFKVFKYLP-KRNVVAWNAMLGGLAMH 335


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/441 (45%), Positives = 283/441 (64%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM- 80
           D V  TAM+S     G+V  A K F+ MP R+ ++WNA++AGY +   + +AL LF  M 
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  +V+ N  ++ SVL  C++L AL  G+  H +  +  L   +T+GT+LV MY KCG++
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDL 292

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  M  R+V  W ++I G A +G G++++ LF  MK  GV PN +TFV VL  C
Sbjct: 293 SSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTAC 352

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GL + G + F+ M+  YGIEP ++HY C+VDL  RAG+L+ A+D I  MP +PH  A
Sbjct: 353 IHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSA 412

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           +G LL ACR+YKN E  ELA+ KL+E + ++ GAYV L+NIYA +  WD V  VR+ MK 
Sbjct: 413 YGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKD 472

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
             V K PG S IE+   +HEF + D  HP+   I   LG+++ R+K  GYV + + V++D
Sbjct: 473 NTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHD 532

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           ++E  K   L +HSEK+AIAFGLIS   G+ +RI KNLRVC DCH+  K+IS + +REII
Sbjct: 533 VDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREII 592

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD  RFHHF+ G CSC  YW
Sbjct: 593 LRDTTRFHHFRGGHCSCDDYW 613



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 28/271 (10%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G L   + +FD I  PDVV    ++      GD D AR++F  MP RD  +WN M++G +
Sbjct: 63  GRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLS 122

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G   EA  +F  M +     N VS  +++S     G +     A  +      K    
Sbjct: 123 KSGAVEEAKVVFLAMPVR----NSVSWNAMVSGFACSGDMST---AEEWFRNAPEKEDAV 175

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQA 184
           L TA+V  Y   GN+ KA+ +F  M  RN+ +W +V+ G   N   + +L LF +++++A
Sbjct: 176 LWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA 235

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW---------LEHYGCLVDL 235
            V+PN  T  SVL GC  +  +  G++          I  W         L     LV +
Sbjct: 236 NVQPNASTLSSVLLGCSNLSALGFGKQ----------IHQWCMKLLLSRNLTVGTSLVSM 285

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           Y + G L  A  +  +M  +    AW A+++
Sbjct: 286 YCKCGDLSSACILFGEMHTR-DVVAWNAMIS 315



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 53/336 (15%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLFHLMQIHD 84
            TA ++A  + GD+  A + F   P +    +N +LAGYA+  G+  +A HLF  +   D
Sbjct: 20  STAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPD 79

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V    VS  ++L      G  D  R     +    +    T+ + L    SK G + +A 
Sbjct: 80  V----VSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGL----SKSGAVEEAK 131

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  RN  +W +++ G A +G    + E F   + A  + + V + +++ G   +G
Sbjct: 132 VVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWF---RNAPEKEDAVLWTAMVSGYMDIG 188

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHAGA 260
            V +  ++F++M         L  +  +V  Y +    D+AL +   M     ++P+A  
Sbjct: 189 NVVKAIKYFEAMPVRN-----LVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAST 243

Query: 261 WGALLNACRMYKNTEMGE---------LASRKLV-----------------------ELE 288
             ++L  C        G+         L SR L                        E+ 
Sbjct: 244 LSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMH 303

Query: 289 TKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           T++  A+  + + YA+  +    IN+ + MK +GV+
Sbjct: 304 TRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/445 (44%), Positives = 284/445 (63%), Gaps = 5/445 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHL 79
           D++   A+I   +KC     AR MFD +P +D   + W  ++ G AQ G++ EAL LF  
Sbjct: 427 DLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQ 486

Query: 80  MQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL-GTALVDMYSK 136
           M   D  V  N  ++   L AC  LGAL  GR  H Y+ RNR +  +      L+DMYSK
Sbjct: 487 MLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 546

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G+++ A   F  M +RN  +WTS++ G  M+G GE++L++F  M++  + P+ VTFV V
Sbjct: 547 SGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVV 606

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   G+V++G  +F+ M +++G+ P  EHY C+VDL  RAGRLDEA+++I  MPMKP
Sbjct: 607 LYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKP 666

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               W ALL+ACR+Y N E+GE A+ +L+ELE+ N G+Y LLSNIYA ++ W  V  +R 
Sbjct: 667 TPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRY 726

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +MK  G+KK PGCS ++  +    FFAGD +HP   +I  +L ++ +R+K  GYV +   
Sbjct: 727 LMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRF 786

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            ++D+++EEK D L +HSEK+A+A+G+++   G PIRI KNLR C DCH     IS +  
Sbjct: 787 ALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIE 846

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
            EIIVRD +RFHHFK G CSC+GYW
Sbjct: 847 HEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 147/290 (50%), Gaps = 16/290 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MYA+ G +    KVF+ +   DVV   AM++  ++ G  D A  +F+++ E     + + 
Sbjct: 294 MYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVT 353

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-- 114
           W+A++AGYAQ G   EAL +F  M +   + N V++VS+LS C   G L  G+  H +  
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAI 413

Query: 115 -----IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAM 167
                ++ N     + +  AL+DMYSKC +   A   F     K+R+V TWT +IGG A 
Sbjct: 414 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQ 473

Query: 168 NGAGEKSLELFSLMKQAG--VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
           +G   ++LELFS M Q    V PN  T    L  C  +G +  GR+    + R       
Sbjct: 474 HGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 533

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           L    CL+D+Y ++G +D A  V + M  + +  +W +L+    M+   E
Sbjct: 534 LFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGRGE 582



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 119/237 (50%), Gaps = 39/237 (16%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKS 70
           VF    E +V     ++S   +CG  + AR++FDEM ER   D ++WN+++A Y Q G S
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 230

Query: 71  REALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             A+ +F  M +   ++ + VS+V+VL AC  +GA  +G+  H Y  R+ L   V +G A
Sbjct: 231 IRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 290

Query: 130 LVDMYSKCGNMNKAMDFFWGMK-----------------------------------ERN 154
           +VDMY+KCG M +A   F  MK                                   E N
Sbjct: 291 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 350

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           V TW++VI G A  G G ++L++F  M   G  PN VT VS+L GC   G +  G+E
Sbjct: 351 VVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKE 407



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 8/216 (3%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN ++      G   + L L+  MQ    + +  +   VL AC  + +   G   H  + 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV---YTWTSVIGGLAMNGAGEK 173
            +  +  V +G  LV MY +CG    A   F  M+ER V    +W S++      G   +
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 174 SLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC 231
           ++++F  M +  G+RP+ V+ V+VL  C  VG    G++ H  ++R     + ++ +   
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN--A 290

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +VD+Y + G ++EA  V  +M +K    +W A++  
Sbjct: 291 VVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTG 325


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/461 (42%), Positives = 289/461 (62%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +    ++F+ + E  V    AM+    + G VD A+ +F++M ERD   W+AM+
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMI 305

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y Q     EAL  F  M    V+ N  S++S+L+ C  L  LD GR  H  + R    
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFD 365

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           M V   +AL+ MY KCGN++KA   F   + +++  W S+I G A +G GE++L +F  M
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDM 425

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           + AG+ P+ +T++  L  C   G V+EGRE F+SM     I P  EHY C+VDL GR+G 
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           ++EA D+I  MP++P A  WGAL+ ACRM++N E+ E A++KL+ELE  N G YVLLS+I
Sbjct: 486 VEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHI 545

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE-THPRYNEIEVMLGE 360
           Y     W+    +R+ + ++ + K PGCS IE D+ VH F +GD   HP +  I  +L +
Sbjct: 546 YTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEK 605

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L  +GY A+ + V++DI+EE+K  +L  HSE+ A+A+GL+ + EG+PIR++KNLRV
Sbjct: 606 LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRV 665

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+K+ +REII+RD NRFHHFK+G CSC+ YW
Sbjct: 666 CGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 130/253 (51%), Gaps = 11/253 (4%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           + G +   +++FD + + DVV  TAM+S   + G +  AR +FDEMP+R+ ++W AM++G
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISG 214

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ G+   A  LF +M     + NEVS  ++L      G ++    A ++      +  
Sbjct: 215 YAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDA--AELF--NAMPEHP 266

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V    A++  + + G ++ A   F  M ER+  TW+++I     N    ++L  F  M  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            GVRPN  + +S+L  C  + +++ GRE H   +R  + ++ +      L+ +Y + G L
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFA--VSALITMYIKCGNL 384

Query: 243 DEALDVINKMPMK 255
           D+A  V +    K
Sbjct: 385 DKAKRVFHTFEPK 397



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 123/297 (41%), Gaps = 66/297 (22%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV- 85
            A I+  A+ G+++ AR  F+ MP R   ++NA+LAGY +      AL LF  M   D+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 86  ----------------------------KLNEVSMVSVLSACTHLGAL-DQGRWAHVYIE 116
                                         + VS  S+L      G L D  R      E
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 117 RNRLKMTVTLG--------------------------TALVDMYSKCGNMNKAMDFFWGM 150
           RN +  TV LG                          TA++  Y + G + +A   F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            +RNV +WT++I G A NG    + +LF +M +     NEV++ ++L G    G VE+  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           E F++M      E  +     ++  +G+ G +D A  V  KM  +   G W A++ A
Sbjct: 257 ELFNAMP-----EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDD-GTWSAMIKA 307


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/441 (43%), Positives = 278/441 (63%), Gaps = 2/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   Q+A     A+CG V++ARK+FD +  +D + W   +  Y +     EAL L   M 
Sbjct: 142 DQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMM 201

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTALVDMYSKCGNM 140
           +  +  + ++++ V+ AC+ L +       H  I         + + TAL+D+Y KCG++
Sbjct: 202 LQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSL 261

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F GM+ERN+ TW+++I G  M+G G ++L LF  MK A V+P+ +TFVS+L  C
Sbjct: 262 TYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMK-ASVKPDHITFVSILSAC 320

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV EG E F+SM R++G+ P  EHY C+VD+ GRAG+LDEA D I +MP++P+A  
Sbjct: 321 SHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAV 380

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL ACR++ N ++ E+ +R L +L+  N G YV+L NIY  +       ++R +MK 
Sbjct: 381 WGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKN 440

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +GVKK+ G SVIE+  +++ F AGD +HP+ + I   L  +  R++  GY  + N V++D
Sbjct: 441 RGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHD 500

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           ++EE KE  L  HSEK+AI FGL++L  G  IRI KNLRVC DCH  TK ISKV  REI+
Sbjct: 501 VDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIV 560

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD +RFHHFK G CSC+ YW
Sbjct: 561 VRDAHRFHHFKNGACSCRDYW 581



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 120/263 (45%), Gaps = 10/263 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q V    ++  V    ++I+   KC   +L+R++FDEMP+++ ++W+A++    Q  + +
Sbjct: 34  QDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCK 93

Query: 72  EALHLFHLMQIHDVKLNEVSMVS---VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           E   LF  M      L+E S  S   +L+A   + + ++    +  +  N L    ++ +
Sbjct: 94  EGFSLFRQM------LSEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQS 147

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           A   M+++CG +  A   F G+  +++ TW + I          ++L L   M   G+ P
Sbjct: 148 AAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFP 207

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           + +T + V+R C  +   +        +   +     L     L+DLY + G L  A  V
Sbjct: 208 DAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKV 267

Query: 249 INKMPMKPHAGAWGALLNACRMY 271
            + M  + +   W A+++   M+
Sbjct: 268 FDGMQER-NIITWSAMISGYGMH 289



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 40/169 (23%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G L Y +KVFDG+ E +++  +AMIS                             
Sbjct: 254 LYVKCGSLTYARKVFDGMQERNIITWSAMIS----------------------------- 284

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             GY   G  REAL+LF  M+   VK + ++ VS+LSAC+H G + +G      + R+  
Sbjct: 285 --GYGMHGWGREALNLFDQMKA-SVKPDHITFVSILSACSHSGLVAEGWECFNSMARD-- 339

Query: 121 KMTVTLG----TALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGG 164
              VT        +VD+  + G +++A DF   M  R N   W +++G 
Sbjct: 340 -FGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGA 387



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           ++ +  +   ++ AC+ L   + G   H  + +   +  V +  +L+ MY KC     + 
Sbjct: 6   IQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSR 65

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M ++N  +W+++IG    +   ++   LF  M   G RP+    ++ +   CV  
Sbjct: 66  QVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM--ACV-- 121

Query: 205 LVEEGREHFDSMRR---EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
                 E  D + R   E G++           ++ R GR++ A  + + + M      W
Sbjct: 122 ---RSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGI-MSKDLVTW 177

Query: 262 GALLNA 267
              + A
Sbjct: 178 ATTIEA 183



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M + G++P+  TF  +++ C  +   E G R H D ++  Y  + ++ +   L+ +YG+ 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISN--SLITMYGKC 58

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNAC 268
            + + +  V ++MP K +A +W A++ AC
Sbjct: 59  DKYELSRQVFDEMPDK-NAVSWSAIIGAC 86


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/456 (43%), Positives = 287/456 (62%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G +    K+F  + + + V  + +I   AK GD+D A ++FD+MPE++ ++W  M+ G++
Sbjct: 264 GSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFS 323

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G S +AL +F  M    V+ N  ++VS LSAC  +G L+ G   H YI+ N L +T  
Sbjct: 324 RNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEA 383

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LGTALVDMY+KCGN+  A + F   +++++ TWT +I G A++G  E+++  F  M  AG
Sbjct: 384 LGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAG 443

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           ++P+EV F+++L  C   G V+ G   FDSMR +Y IEP ++HY  +VD+ GR+G+L EA
Sbjct: 444 IKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEA 503

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
           L  I +MPM P    WGAL  ACR +K T+M + A  KL++LE  + G Y+ LSN YA  
Sbjct: 504 LRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAAL 563

Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
             W+    VR +M+ +GV K  G S IEV+ +VH F +GD  H     I + L EI    
Sbjct: 564 GQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGA 623

Query: 366 KLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
              GY+  T  V++++E+EEKED L  H EK+A+AF LI    G+ IRIVKNL+VC DCH
Sbjct: 624 VKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCH 683

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            + K  SK+  REI++RD  RFHHFK+G CSC+ +W
Sbjct: 684 SLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 48/259 (18%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER-----DPIAW 57
            ELG   +C  +  GI E D   + +++    K   +  A K+FDE PER       + W
Sbjct: 195 TELGMAIHCMILRCGI-ELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLW 253

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N ++ G  + G  ++A+ LF  M     K   VS                  W       
Sbjct: 254 NVLIKGCCKAGSMKKAVKLFKAMP----KKENVS------------------W------- 284

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                     + L+D ++K G+M++AM+ F  M E+NV +WT+++ G + NG  EK+L +
Sbjct: 285 ----------STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSM 334

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLY 236
           FS M + GVRPN  T VS L  C  +G +E G R H     ++ G+         LVD+Y
Sbjct: 335 FSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIH--KYIKDNGLHLTEALGTALVDMY 392

Query: 237 GRAGRLDEALDVINKMPMK 255
            + G ++ A +V  +   K
Sbjct: 393 AKCGNIESASEVFGETEQK 411


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/466 (42%), Positives = 293/466 (62%), Gaps = 9/466 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMI---SACAKCGDVDLARKMFDEMPERDPIAW 57
           +Y   G   +C    DG H+ D +  TA++   S C + GD   A K+FDEMP RD +AW
Sbjct: 118 LYLPGGVQVHCNIFKDG-HQWDTLLLTAVMDLYSLCQRGGD---ACKVFDEMPHRDTVAW 173

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYI 115
           N M++   +  ++R+AL LF +MQ    K   ++V+ + +L AC HL AL+ G   H YI
Sbjct: 174 NVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYI 233

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
                +  + L  +L+ MYS+CG ++KA + F GM  +NV +W+++I GLAMNG G +++
Sbjct: 234 MERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAI 293

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           E F  M + GV P++ TF  VL  C   G+V+EG   F  M RE+G+ P + HYGC+VDL
Sbjct: 294 EAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDL 353

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
            GRAG LD+A  +I  M +KP +  W  LL ACR++ +  +GE     L+EL+ +  G Y
Sbjct: 354 LGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDY 413

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
           VLL NIY+ + +W++V  VR++MK K ++  PGCS IE+   VHEF   D +H R  EI 
Sbjct: 414 VLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIY 473

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
             L EI+ +L++AGYV   +  ++ ++++EK   L  HSEK+A+AFG+++   G  +R+ 
Sbjct: 474 ETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVA 533

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            NLRVC DCH+  K+ S V+NR++++RD NRFHHF+ G+CSC  YW
Sbjct: 534 SNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 108/256 (42%), Gaps = 5/256 (1%)

Query: 18  IHEPDVVCQ-TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           I  P V  Q  + I+      D   +++ F ++       +N M+   +     ++ L L
Sbjct: 32  IQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRACSMSDSPQKGLLL 91

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           +  M+   +  + +S    + +C     L  G   H  I ++  +    L TA++D+YS 
Sbjct: 92  YRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSL 151

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR--PNEVTFV 194
           C     A   F  M  R+   W  +I     N     +L LF +M+ +  +  P++VT +
Sbjct: 152 CQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCL 211

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            +L+ C  +  +E G E       E G    L     L+ +Y R G LD+A +V   M  
Sbjct: 212 LLLQACAHLNALEFG-ERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGN 270

Query: 255 KPHAGAWGALLNACRM 270
           K +  +W A+++   M
Sbjct: 271 K-NVVSWSAMISGLAM 285


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/461 (42%), Positives = 290/461 (62%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +    ++F+ + E  V    AM+    + G VD A+ +F++M ERD   W+AM+
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMI 305

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y Q     EAL  F  M    V+ N  S++S+L+ C  L  LD GR  H  + R    
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFD 365

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           M V   +AL+ MY KCGN++KA   F   + +++  W S+I G A +G GE++L +F  M
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDM 425

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           + AG+ P+ +T++  L  C   G V+EGRE F+SM     I P  EHY C+VDL GR+G 
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           ++EA D+I  MP++P A  WGAL+ ACRM++N E+ E+A++KL+ELE  N G YVLLS+I
Sbjct: 486 VEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHI 545

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE-THPRYNEIEVMLGE 360
           Y     W+    +R+ + ++ + K PGCS IE D+ VH F +GD   HP +  I  +L +
Sbjct: 546 YTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEK 605

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L  +GY A+ + V++DI+EE+K  +L  HSE+ A+A+GL+ + EG+PIR++KNLRV
Sbjct: 606 LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRV 665

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+K+ +REI++RD NRFHHFK+G CSC+ YW
Sbjct: 666 CGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 11/253 (4%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           + G +   +++FD + + DVV  TAM+S   + G +  AR +FDEMP+R+ ++W AM++G
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISG 214

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ G+   A  LF +M     + NEVS  ++L      G ++    A ++      +  
Sbjct: 215 YAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDA--AELF--NAMPEHP 266

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V    A++  + + G ++ A   F  M+ER+  TW+++I     N    ++L  F  M  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            GVRPN  + +S+L  C  + +++ GRE H   +R  + ++ +      L+ +Y + G L
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFA--VSALITMYIKCGNL 384

Query: 243 DEALDVINKMPMK 255
           D+A  V +    K
Sbjct: 385 DKAKRVFHTFEPK 397



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 123/297 (41%), Gaps = 66/297 (22%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV- 85
            A I+  A+ G+++ AR  F+ MP R   ++NA+LAGY +      AL LF  M   D+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 86  ----------------------------KLNEVSMVSVLSACTHLGAL-DQGRWAHVYIE 116
                                         + VS  S+L      G L D  R      E
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 117 RNRLKMTVTLG--------------------------TALVDMYSKCGNMNKAMDFFWGM 150
           RN +  TV LG                          TA++  Y + G + +A   F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            +RNV +WT++I G A NG    + +LF +M +     NEV++ ++L G    G VE+  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           E F++M      E  +     ++  +G+ G +D A  V  KM  +   G W A++ A
Sbjct: 257 ELFNAMP-----EHPVAACNAMMVGFGQRGMVDAAKTVFEKMRER-DDGTWSAMIKA 307


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/461 (42%), Positives = 289/461 (62%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +    ++F+ + E  V    AM+    + G VD A+ +F++M ERD   W+AM+
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMI 305

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y Q     EAL  F  M    V+ N  S++S+L+ C  L  LD GR  H  + R    
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFD 365

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           M V   +AL+ MY KCGN++KA   F   + +++  W S+I G A +G GE++L +F  M
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDM 425

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           + AG+ P+ +T++  L  C   G V+EGRE F+SM     I P  EHY C+VDL GR+G 
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           ++EA D+I  MP++P A  WGAL+ ACRM++N E+ E A++KL+ELE  N G YVLLS+I
Sbjct: 486 VEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHI 545

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE-THPRYNEIEVMLGE 360
           Y     W+    +R+ + ++ + K PGCS IE D+ VH F +GD   HP +  I  +L +
Sbjct: 546 YTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEK 605

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L  +GY A+ + V++DI+EE+K  +L  HSE+ A+A+GL+ + EG+PIR++KNLRV
Sbjct: 606 LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRV 665

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+K+ +REII+RD NRFHHFK+G CSC+ YW
Sbjct: 666 CGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 130/253 (51%), Gaps = 11/253 (4%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           + G +   +++FD + + DVV  TAM+S   + G +  AR +FDEMP+R+ ++W AM++G
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISG 214

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ G+   A  LF +M     + NEVS  ++L      G ++    A ++      +  
Sbjct: 215 YAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDA--AELF--NAMPEHP 266

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V    A++  + + G ++ A   F  M ER+  TW+++I     N    ++L  F  M  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            GVRPN  + +S+L  C  + +++ GRE H   +R  + ++ +      L+ +Y + G L
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFA--VSALITMYIKCGNL 384

Query: 243 DEALDVINKMPMK 255
           D+A  V +    K
Sbjct: 385 DKAKRVFHTFEPK 397



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 123/297 (41%), Gaps = 66/297 (22%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV- 85
            A I+  A+ G+++ AR  F+ MP R   ++NA+LAGY +      AL LF  M   D+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 86  ----------------------------KLNEVSMVSVLSACTHLGAL-DQGRWAHVYIE 116
                                         + VS  S+L      G L D  R      E
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 117 RNRLKMTVTLG--------------------------TALVDMYSKCGNMNKAMDFFWGM 150
           RN +  TV LG                          TA++  Y + G + +A   F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            +RNV +WT++I G A NG    + +LF +M +     NEV++ ++L G    G VE+  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           E F++M      E  +     ++  +G+ G +D A  V  KM  +   G W A++ A
Sbjct: 257 ELFNAMP-----EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCER-DDGTWSAMIKA 307


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/436 (44%), Positives = 285/436 (65%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++ A  K G+VD A K+F  + E+D +AW+AM+ GYAQ G +  A+ +F  M    +K
Sbjct: 45  TALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIK 104

Query: 87  LNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            NE +   +++AC    A ++QG+  H +  ++R    + + +AL+ MYSK G++  A +
Sbjct: 105 PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFE 164

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F   +ER++ +W S+I G A +G G K+LE+F  M++  +  + VTF+ V+  C   GL
Sbjct: 165 VFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGL 224

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             EG+ +FD M +++ IEP +EHY C+VDLYGRAG L +A+++IN+MP    A  W  LL
Sbjct: 225 ANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLL 284

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            A  +++N E+G+LA+ KL+ L+ +N  +YVLL+N+YA   NW     VR++M+ K VKK
Sbjct: 285 AASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKK 344

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           + G S IEV  + + F AGD +HP  N+I   L E+S +LK AGY  +T+ V  D++EE 
Sbjct: 345 VAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEH 404

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L +HSE++AIAFGLI    G P++IVKNLRVC DCH V K+IS +  R+I+VRD N
Sbjct: 405 KEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSN 464

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK G CSC  YW
Sbjct: 465 RFHHFKGGLCSCGDYW 480



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    +K N+ +  ++L+A   +   +    A   I+RN +K + ++GTAL+D Y K GN
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFEMHAQA---IKRNYVK-SPSVGTALLDAYVKRGN 56

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +++A   F  ++E+++  W+++I G A  G  E ++ +F  M +  ++PNE TF  ++  
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 200 CCV-VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           C      VE+G++ H  S++  +     +     L+ +Y + G ++ A +V  +
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFNNALCVS--SALLTMYSKRGDIESAFEVFKR 168


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/473 (42%), Positives = 297/473 (62%), Gaps = 14/473 (2%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +G  ++VF+ I EP VV  T ++    KC  V+  + +FDEMPER+ +AW  ++
Sbjct: 158 YVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLI 217

Query: 62  AGYAQCGKSREALHLFHLMQI---HDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-IER 117
            GY   G ++EA  L   M         LN +++ SVLSAC+  G +  GRW H Y ++ 
Sbjct: 218 KGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKA 277

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
               + V +GT+LVDMY+KCG ++ A+  F  M  RNV  W +++ GLAM+G G+  +E+
Sbjct: 278 VGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEM 337

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F+ M +  V+P+ VTF+++L  C   GLVE+G ++F  + R YGI P +EHY C+VDL G
Sbjct: 338 FACMVEE-VKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLG 396

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAGRL+EA D++ K+P+ P+    G+LL AC  +    +GE   R+LV+++  N   ++L
Sbjct: 397 RAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHIL 456

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           LSN+YA     D+  ++R+++K +G++K+PG S I VD ++H F AGD++HPR  +I + 
Sbjct: 457 LSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMK 516

Query: 358 LGEISRRLKLAGYVANTN-PVMYDIEE--------EEKEDTLCKHSEKVAIAFGLISLKE 408
           L ++  +L+LAGYV NTN  V++            EE E  L  HSEK+A+ FGL+S   
Sbjct: 517 LDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLALCFGLMSTPS 576

Query: 409 GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
             P+ I KNLR+C DCH   K+ S ++ REI+VRDR RFH FK+G CSC  YW
Sbjct: 577 SSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 41/290 (14%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALH 75
           +  P      A++   A C     ARK+FD +P   +D + + A++    +C    +AL 
Sbjct: 44  LFSPSSFLLNALLHLYASCPLPSHARKLFDRIPHSHKDSVDYTALI----RCSHPLDALR 99

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
            +  M+   + L+ V+++  L AC+ LG  +     HV + +        +   ++D Y 
Sbjct: 100 FYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYV 159

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK---------------------- 173
           KCG + +A   F  ++E +V +WT V+ G+      E                       
Sbjct: 160 KCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKG 219

Query: 174 ------SLELFSLMKQA------GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
                 + E F L+K+       G   N +T  SVL  C   G V  GR       +  G
Sbjct: 220 YVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVG 279

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            +  +     LVD+Y + GR+  AL V   MP + +  AW A+L    M+
Sbjct: 280 WDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRR-NVVAWNAMLCGLAMH 328


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 280/436 (64%), Gaps = 2/436 (0%)

Query: 28  AMISACAKC--GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           A+++   +C  G++D+A  +  EM E+   AWN ++ GY   G+SREAL  +  +Q+  +
Sbjct: 252 ALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAI 311

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            +++V+ +SVL+ACT   +L +G+  H       L   V +  AL +MYSKCG+M  A  
Sbjct: 312 PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARR 371

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  R+  +W  ++   A +G  E+ L+L   M+Q GV+ N +TFVSVL  C   GL
Sbjct: 372 IFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGL 431

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           + EG ++F S+  + GIE   EHYGCLVDL GRAG+L EA   I+KMP +P    W +LL
Sbjct: 432 IAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLL 491

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++K+ + G+LA+RKL+EL+  N  A V+LSNIY+E  +W     +R+ M ++ VKK
Sbjct: 492 GACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKK 551

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PG S I+V  +VHEF   D +HPR  EI   + E+   ++ AGYV +T  V++D++EE+
Sbjct: 552 VPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQ 611

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSEK+AIAFGLIS  E   + I KNLRVC DCH  TK ISK+  REI+VRD +
Sbjct: 612 KESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNH 671

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHF++G CSCK YW
Sbjct: 672 RFHHFRDGSCSCKDYW 687



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 138/256 (53%), Gaps = 6/256 (2%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  DV   TA+++   KCG +  ARK+FD MP R    WN+M++ Y+   +S EA  +F 
Sbjct: 41  HSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQ 100

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ    + + V+ +S+L AC +   L  G+     I     ++ + +GTAL+ MY++C 
Sbjct: 101 RMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCR 160

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +   A   F  MK++N+ TW+++I   A +G   ++L  F +M+Q G+ PN VTF+S+L 
Sbjct: 161 SPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLN 220

Query: 199 GCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR--AGRLDEALDVINKMPMK 255
           G     GL E  R H   +  E+G++        LV++YGR   G LD A  ++ +M  +
Sbjct: 221 GFTTPSGLEELSRIHL--LITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-E 277

Query: 256 PHAGAWGALLNACRMY 271
               AW  L+N   ++
Sbjct: 278 QQITAWNVLINGYTLH 293



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV+ + A+ +  +KCG ++ AR++FD MP R  ++WN ML  YAQ G+S E L L   
Sbjct: 347 DSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRK 406

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   VKLN ++ VSVLS+C+H G + +G ++ H       +++       LVD+  + G
Sbjct: 407 MEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAG 466

Query: 139 NMNKAMDFFWGM-KERNVYTWTSVIGG 164
            + +A  +   M  E  + TW S++G 
Sbjct: 467 KLQEAEKYISKMPSEPEIVTWASLLGA 493



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  VK N ++ ++VL++     AL +G++ H  +  +   + V + TALV+ Y+KCG+
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F GM  R+V TW S+I   +++    ++  +F  M+  G R + VTF+S+L  
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C     ++ G+ H      E   E  L     L+ +Y R    + A  V  +M  K +  
Sbjct: 121 CVNPENLQHGK-HVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-NLI 178

Query: 260 AWGALLNA 267
            W A++ A
Sbjct: 179 TWSAIITA 186


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/465 (42%), Positives = 286/465 (61%), Gaps = 5/465 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y+  G +   ++ FD + E D++  TAM+SA A  G +   R++F  MPERD I+W  M+
Sbjct: 188 YSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMV 247

Query: 62  AGYAQCGKSREALHLFHLMQIH-----DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           A   +     E+  LF  M  H      +  N V+ +++L AC+ LGAL +GR  H  + 
Sbjct: 248 AALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVA 307

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
                  + +  ALV+ Y +CG +  A   F GM+ R+V +W+S+I   A  G  ++++E
Sbjct: 308 ERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAME 367

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           L+  M   G  P+++ F+SVL  C   G+VE   + F S+  +  +EP LEHY C+VD+ 
Sbjct: 368 LYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVL 427

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG+L +A D++  MP  P    +  +L+AC++Y + E GE A+  + EL+ +N   Y+
Sbjct: 428 GRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYI 487

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
            L+NIY+ +K       +R++M+ +G+KK PGCS IEV   VHEF AGD+ HP+ +EI  
Sbjct: 488 TLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYA 547

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            +  + R++K AGY  +T  V+ D+EE+EKE+ L  HSEK+AIAFGLIS   G P+RIVK
Sbjct: 548 EIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVK 607

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLRVC DCH  TK+ISKV  REI+VRD NRFHHF+ G CSC  YW
Sbjct: 608 NLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 149/377 (39%), Gaps = 93/377 (24%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+  LGC+   +++FD I + D      M+S  A+ GD+  A+ +FD MP     +W A+
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 61  LAGYAQCGKSREALHLFHLMQ-------------------IHDVKL--------NEVSMV 93
           L+ +A  G   EA  LF  MQ                   I D K         + V+  
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWT 120

Query: 94  SVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLG------------------------- 127
           ++L+A    G ++  R     + ERN    T  L                          
Sbjct: 121 AMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVA 180

Query: 128 -TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ--- 183
            TA++  YS  G++ +A   F  M ER++  WT+++   A NG    + E+F  M +   
Sbjct: 181 WTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDL 240

Query: 184 ---------------------------------AGVRPNEVTFVSVLRGCCVVGLVEEGR 210
                                             G+ PN VTF+++L  C  +G + EGR
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGR 300

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA-CR 269
           +   +   E G +  L     LV+ YGR G L +A  V + M  +    +W ++++A  +
Sbjct: 301 K-IHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM-RRRDVISWSSMISAFAQ 358

Query: 270 MYKNTEMGELASRKLVE 286
             +  E  EL  R L E
Sbjct: 359 RGRVDEAMELYHRMLSE 375


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 277/442 (62%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D    TA++   AK   ++ A   FD +  RD  +W  +++GYAQ  ++ +A+  F  
Sbjct: 285 DDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQ 344

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +K NE ++ S LS C+H+  L+ GR  H    +      + +G+ALVD+Y KCG 
Sbjct: 345 MQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGC 404

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M  A   F G+  R++ +W ++I G + +G GEK+LE F +M   G+ P+E TF+ VL  
Sbjct: 405 MEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSA 464

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +GLVEEG++ FDSM + YGI P +EHY C+VD+ GRAG+ +E    I +M + P++ 
Sbjct: 465 CSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSL 524

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  +L AC+++ N + GE A++KL E+E     +Y+LLSNI+A    WD V N+R +M 
Sbjct: 525 IWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMT 584

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           ++G+KK PGCS +EVD +VH F + D +HP+  EI   L ++ + L   GYV  T  V++
Sbjct: 585 SRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLH 644

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           ++  +EK + L  HSE++A++F L+S     PIRI KNLR+C DCHD  K+IS + N+EI
Sbjct: 645 NVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEI 704

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD  RFHHFK G CSC+  W
Sbjct: 705 VVRDIRRFHHFKRGTCSCQDRW 726



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 129/229 (56%), Gaps = 2/229 (0%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           ++LA ++F  MPE++ ++WNA+L GYAQ G  ++ L LF  M+  + K ++ ++ +VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C + G+L +G+  H    R+  ++   LG +LVDMYSKCG +  A+  F  ++  +V  W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           +++I GL   G G+++ ELF LM++ G RPN+ T  S++     +G +  G+     + +
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            YG E        L+ +Y ++  +++   V   M   P   +W ALL+ 
Sbjct: 181 -YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 18/292 (6%)

Query: 5   LGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +G L Y Q +   I     E D +    +I    K   V+   K+F+ M   D ++WNA+
Sbjct: 165 MGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNAL 224

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L+G+           +F+ M +   K N  + +SVL +C+ L   + G+  H +I +N  
Sbjct: 225 LSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSS 284

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                +GTALVDMY+K   +  A   F  +  R++++WT +I G A     EK+++ F  
Sbjct: 285 DDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQ 344

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG------CLVD 234
           M++ G++PNE T  S L GC  +  +E GR+        + +     H+G       LVD
Sbjct: 345 MQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVD 397

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           LYG+ G ++ A + I K  +     +W  +++    +   E    A R ++ 
Sbjct: 398 LYGKCGCMEHA-EAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLS 448



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 130/270 (48%), Gaps = 7/270 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D     +++   +KCG V  A K+F ++   D +AW+AM+ G  Q G  +EA  LFHL
Sbjct: 83  EIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHL 142

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+    + N+ ++ S++S  T++G L  G+  H  I +   +    +   L+ MY K   
Sbjct: 143 MRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRC 202

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +      F  M   ++ +W +++ G   +    +   +F  M   G +PN  TF+SVLR 
Sbjct: 203 VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRS 262

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E G++ H   ++     + ++     LVD+Y +A  L++A    +++ +    
Sbjct: 263 CSSLLDPEFGKQVHAHIIKNSSDDDDFVG--TALVDMYAKARCLEDAGVAFDRL-VNRDI 319

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELE 288
            +W  +++    Y  T+  E A +   +++
Sbjct: 320 FSWTVIISG---YAQTDQAEKAVKYFRQMQ 346



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  D+   +A++    KCG ++ A  +F  +  RD ++WN +++GY+Q G+  +AL  F 
Sbjct: 385 HFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFR 444

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKC 137
           +M    +  +E + + VLSAC+ +G +++G+     + +   +  ++     +VD+  + 
Sbjct: 445 MMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRA 504

Query: 138 GNMNKAMDFFWGMKERNV----YTWTSVIGGLAMNGA---GEKS 174
           G  N+   F   ++E N+      W +V+G   ++G    GEK+
Sbjct: 505 GKFNEVKIF---IEEMNLTPYSLIWETVLGACKLHGNVDFGEKA 545


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/460 (42%), Positives = 289/460 (62%), Gaps = 1/460 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   ++ F+ +    V+   AMI A  + G++  AR++FD+M +RD   W  M+
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMI 303

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y + G   EAL LF  MQ   V+ +  S++S+LS C  L +L  GR  H ++ R +  
Sbjct: 304 KAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFD 363

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V + + L+ MY KCG + KA   F     +++  W S+I G A +G GE++L++F  M
Sbjct: 364 GDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEM 423

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +G  PN+VT +++L  C   G +EEG E F+SM  ++ + P +EHY C VD+ GRAG+
Sbjct: 424 PLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGK 483

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           +D+A+++IN M +KP A  WGALL AC+ +   ++ E+A++KL E+E +N G Y+LLS+I
Sbjct: 484 VDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSI 543

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF-AGDETHPRYNEIEVMLGE 360
            A    W  V  +R+ M+ K V K PGCS IEV ++VH F   G   HP    I +ML +
Sbjct: 544 NASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEK 603

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
               L+ AGY  + + V++D++EEEK D+L +HSE++A+A+GL+ L EGVPIR++KNLRV
Sbjct: 604 TDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRV 663

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           C DCH   K+ISKV  REII+RD NRFHHF  G+CSC+ Y
Sbjct: 664 CGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 141/283 (49%), Gaps = 15/283 (5%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G +   +K++D +   DVV  T MI    + G VD AR++FDEM ER+ I W  M+ GY 
Sbjct: 155 GRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYG 214

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q  +   A  LF +M     +  EVS  S+L   T  G ++    A  + E   +K  + 
Sbjct: 215 QNKRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRIED---AEEFFEVMPMKPVIA 267

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
               +V +  + G + KA   F  M++R+  TW  +I      G   ++LELF+ M++ G
Sbjct: 268 CNAMIVAL-GEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQG 326

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           VRP+  + +S+L  C  +  ++ GR+ H   +R ++  + ++     L+ +Y + G L +
Sbjct: 327 VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVA--SVLMTMYVKCGELVK 384

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
           A  V ++ P K     W ++++    Y +  +GE A +   E+
Sbjct: 385 AKLVFDRFPSK-DIIMWNSIISG---YASHGLGEEALKVFHEM 423



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 49/263 (18%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           + +G +   +K FD +    +    +++S     G    AR+MFDEMPER+ ++WN +++
Sbjct: 28  SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVS 87

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           GY +     EA ++F +M                                   ERN    
Sbjct: 88  GYIKNRMIEEARNVFEIMP----------------------------------ERN---- 109

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
            V   TA+V  Y + G + +A   FW M ERN  +WT + GGL   G  + + +L+ +M 
Sbjct: 110 -VVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMP 168

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
              V    V   +++ G C  G V+E RE FD M RE  +  W      ++  YG+  R+
Sbjct: 169 GKDV----VASTNMIGGLCREGRVDEAREIFDEM-RERNVITWT----TMITGYGQNKRV 219

Query: 243 DEALDVINKMPMKPHAGAWGALL 265
           D A  +   MP K    +W ++L
Sbjct: 220 DVARKLFEVMPEKTEV-SWTSML 241


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/455 (41%), Positives = 283/455 (62%), Gaps = 15/455 (3%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPER---------------DPIAWNAMLAGYAQ 66
            D   + ++I    KCG+++ A  +F  +P+                + ++W++M++GY Q
Sbjct: 554  DGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQ 613

Query: 67   CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
             G+  +AL  F  M    V++++ ++ SV+SAC   G L+ GR  H YI++    + V L
Sbjct: 614  NGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFL 673

Query: 127  GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            G++++DMY KCG++N A   F   K+RNV  WTS+I G A++G G +++ LF LM   G+
Sbjct: 674  GSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGI 733

Query: 187  RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
             PNEV+FV VL  C   GL+EEG ++F  MR  YGI P  EH+ C+VDLYGRAGRL+E  
Sbjct: 734  TPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIK 793

Query: 247  DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
            + I+   +   +  W + L++CR++KN EMG    +KL+ELE  + G Y+L S+I A   
Sbjct: 794  EFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEH 853

Query: 307  NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
             W+    +R +M+ +GVKK P  S I++  +VH F  GD +HP+  +I   L E+  RLK
Sbjct: 854  RWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLK 913

Query: 367  LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
              GY  +  PVM D+E+E+++  L  HSEK+AIA+G+IS   G PIR++KNLRVC DCH+
Sbjct: 914  EIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHN 973

Query: 427  VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              K  S++  REII+RD +RFHHFK G CSC  YW
Sbjct: 974  FIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 138/286 (48%), Gaps = 19/286 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +  C GY +K+F  + E D V    M+S+  + GD+  +  +F ++P +D  +WN M+
Sbjct: 433 YVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMI 492

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            G  + G  R AL L + M       N+++    L   + L  L  G+  H  + +  + 
Sbjct: 493 DGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVL 552

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN---------------VYTWTSVIGGLA 166
               +  +L+DMY KCG M KA   F  + + +                 +W+S++ G  
Sbjct: 553 DDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYV 612

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPW 225
            NG  E +L+ FS M  + V  ++ T  SV+  C   G++E GR+ H    +  +G++ +
Sbjct: 613 QNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVF 672

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           L     ++D+Y + G L++A  + N+   + +   W ++++ C ++
Sbjct: 673 LG--SSIIDMYVKCGSLNDAWLIFNQAKDR-NVVLWTSMISGCALH 715



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 125/260 (48%), Gaps = 35/260 (13%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +++  AK  +++ A KMF+E+P+ D  +W  +++G+A+ G S + L LF  MQ   V  N
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 89  EVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC---------- 137
           + ++  VL +C +++     G+  H +I RN L +   L  +++D Y KC          
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLF 446

Query: 138 ---------------------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
                                G+M K++D F  +  ++  +W ++I GL  NG    +LE
Sbjct: 447 GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALE 506

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDL 235
           L   M  AG   N++TF   L     + ++  G++ H   ++     + ++ +   L+D+
Sbjct: 507 LLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRN--SLIDM 564

Query: 236 YGRAGRLDEALDVINKMPMK 255
           Y + G +++A  +   +P +
Sbjct: 565 YCKCGEMEKASVIFKHLPQE 584



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 4/139 (2%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GY QK+  G+   DV   +++I    KCG ++ A  +F++  +R+ + W +M++G A  G
Sbjct: 660 GYIQKIGHGL---DVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHG 716

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLG 127
           + REA+ LF LM    +  NEVS V VL+AC+H G L++G ++  +  E   ++      
Sbjct: 717 QGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHF 776

Query: 128 TALVDMYSKCGNMNKAMDF 146
           T +VD+Y + G +N+  +F
Sbjct: 777 TCMVDLYGRAGRLNEIKEF 795



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
           G  L+++Y+K  N+ +A   F  + + +V++WT +I G A  G     L LF+ M+  GV
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
            PN+ T   VL+ C           + +  R   GI  W+   G  +D
Sbjct: 384 CPNQFTLSIVLKSC---------SSNVNDSRIGKGIHGWILRNGLDLD 422


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/437 (44%), Positives = 287/437 (65%), Gaps = 2/437 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +  +I+  A+CGD   AR MF        +++NAM+A   +  +  EAL LF  MQ   +
Sbjct: 171 RPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGL 230

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           K   V+++SVLSAC  LGAL+ GRW H Y+ +  L   V + TAL+DMY+KCG++  A+D
Sbjct: 231 KPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAID 290

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F GM+ ++   W+ +I   A +G G +++ LF  MK+ G++P+++TF+ VL  C   GL
Sbjct: 291 VFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGL 350

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V EG ++FD M +++GI P ++HYGC+ DL  R+G+L+ A   I+++P+ P    W  LL
Sbjct: 351 VSEGLQYFDDM-KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLL 409

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           +AC  + + E+G+    ++++L+  + G YV+ SN+ A +  W+ +  VR++M  KGV K
Sbjct: 410 SACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVK 469

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY-DIEEE 384
           +PGCS IE+D  VHEFFAGD  HP+  E   M+ E+  +LKL GYV NT+ V + ++ EE
Sbjct: 470 VPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEE 529

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EK  +L  HSEK+AIAFGL++   G  +R+VKNLRVC DCH + K++S VFNR II+RD 
Sbjct: 530 EKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDL 589

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFHHF+EG CSC  YW
Sbjct: 590 NRFHHFEEGICSCGDYW 606



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 26/263 (9%)

Query: 21  PDVVCQTAMISACAKCGDVDLA--RKMFDEMPER-DPIAWNAMLAGYAQCG-----KSRE 72
           P +V +   +      G   LA  R++FD +P   D + +N +L GYA+       ++  
Sbjct: 57  PALVTRLLTLCTGPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAA 116

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA--- 129
           A+ +F  M    V  +  + VS+L AC    A ++GR AH         + V LG A   
Sbjct: 117 AVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHA--------LAVKLGAADHD 168

Query: 130 -----LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
                L++MY++CG+   A   F G     V ++ ++I     +    ++L LF  M+  
Sbjct: 169 YVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGK 228

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G++P  VT +SVL  C ++G +E GR   D +R+  G+   ++    L+D+Y + G L++
Sbjct: 229 GLKPTSVTVISVLSACALLGALELGRWVHDYVRK-IGLGSLVKVSTALIDMYAKCGSLED 287

Query: 245 ALDVINKMPMKPHAGAWGALLNA 267
           A+DV   M  K    AW  ++ A
Sbjct: 288 AIDVFQGMESKDRQ-AWSVMIVA 309


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/440 (42%), Positives = 282/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++V    ++   AKCG++  + K+F+ M  RD I WN ++A           L +   M+
Sbjct: 450 NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 509

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  +  +M+S+L  C+ L A  QG+  H  I +  L+  V +G  L++MYSKCG++ 
Sbjct: 510 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 569

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  MK ++V TWT++I    M G G+K++  F  M+ AG+ P+ V FV+++  C 
Sbjct: 570 NSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 629

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG  +F  M+++Y IEP +EHY C+VDL  R+  LD+A D I  MP+KP +  W
Sbjct: 630 HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIW 689

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL+ACRM  +TE+ E  S +++EL   + G YVL+SNIYA    WD+V ++R+ +KA+
Sbjct: 690 GALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKAR 749

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK PGCS +E+  +V+ F  G +   ++ E+  +LG ++  +   GY+AN   V++DI
Sbjct: 750 GLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDI 809

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +E+EK D LC HSE++AIAFGL++ K G P++++KNLRVC DCH VTK ISK+  RE++V
Sbjct: 810 DEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLV 869

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH FK+G CSC  YW
Sbjct: 870 RDANRFHVFKDGACSCGDYW 889



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 143/282 (50%), Gaps = 10/282 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E D      +I+  AKCG++  ++++F  M  +D ++WN+M+  Y Q G   EA+ LF 
Sbjct: 347 YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK 406

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           +M+  DVK + V+ V +LS  T LG L  G+  H  + +      + +   LVDMY+KCG
Sbjct: 407 MMKT-DVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG 465

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M  ++  F  MK R++ TW ++I     +      L + S M+  GV P+  T +S+L 
Sbjct: 466 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 525

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C ++    +G+E    + +  G+E  +     L+++Y + G L  +  V   M  K   
Sbjct: 526 VCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 584

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELE----TKNHGAYV 296
             W AL++AC MY     G+ A R   E+E      +H A+V
Sbjct: 585 -TWTALISACGMYGE---GKKAVRAFGEMEAAGIVPDHVAFV 622



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 142/259 (54%), Gaps = 6/259 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV+    ++S   K   +   R++FD+M  RD ++WN M+ GY+Q G   E++ LF  
Sbjct: 248 KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 307

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M ++  K + +++ S+L AC HLG L+ G++ H Y+  +  +   T    L++MY+KCGN
Sbjct: 308 M-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 366

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  + + F GMK ++  +W S+I     NG+ +++++LF +MK   V+P+ VT+V +L  
Sbjct: 367 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSM 425

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +G +  G+E H D  +   G    +     LVD+Y + G + ++L V   M  +   
Sbjct: 426 STQLGDLHLGKELHCDLAK--MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 483

Query: 259 GAWGALLNACRMYKNTEMG 277
             W  ++ +C   ++  +G
Sbjct: 484 -TWNTIIASCVHSEDCNLG 501



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 3/255 (1%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            +V D     D+    A+I    +  D+D ARK+F+EMP RD ++WN++++GY   G   
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EAL +++  +   V  +  +M SVL AC  LG++++G   H  IE+  +K  V +   L+
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 258

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
            MY K   +      F  M  R+  +W ++I G +  G  E+S++LF  M     +P+ +
Sbjct: 259 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 317

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           T  S+L+ C  +G +E G+   D M    G E        L+++Y + G L  + +V + 
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSG 376

Query: 252 MPMKPHAGAWGALLN 266
           M  K    +W +++N
Sbjct: 377 MKCKDSV-SWNSMIN 390



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 4/250 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFD-EMPERDPIAWNAMLAGYAQCGKSREALH 75
           G+H   V+    +I+  A   D   +  +F    P  +   WN+++      G   EAL 
Sbjct: 43  GLHHS-VIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALS 101

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           L+   Q   ++ +  +  SV++AC  L   +  +  H  +        + +G AL+DMY 
Sbjct: 102 LYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYC 161

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           +  +++KA   F  M  R+V +W S+I G   NG   ++LE++   +  GV P+  T  S
Sbjct: 162 RFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSS 221

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VLR C  +G VEEG +    +  + GI+  +     L+ +Y +   L +   + +KM ++
Sbjct: 222 VLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLR 280

Query: 256 PHAGAWGALL 265
             A +W  ++
Sbjct: 281 D-AVSWNTMI 289



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     +I   +KCG +  + ++F  M  +D + W A+++     G+ ++A+  F  
Sbjct: 549 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGE 608

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   +  + V+ V+++ AC+H G +++G  + H   +  +++  +     +VD+ S+  
Sbjct: 609 MEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSA 668

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGE 172
            ++KA DF   M  + +   W +++    M+G  E
Sbjct: 669 LLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 703



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 3/175 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF-WGMKE 152
           S+  A        Q    H  I    L  +V     L+  Y+   +   +   F      
Sbjct: 18  SISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPS 77

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
            NVY W S+I  L  NG   ++L L+S  ++  ++P+  TF SV+  C  +   E  +  
Sbjct: 78  NNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSI 137

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            D +  + G    L     L+D+Y R   LD+A  V  +MP++    +W +L++ 
Sbjct: 138 HDRV-LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVV-SWNSLISG 190


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/442 (41%), Positives = 280/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV   ++++   AK   ++ + ++F  +  RD I+WN+++AGY Q G+  EAL LF  
Sbjct: 238 DSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQ 297

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+   V+  SV+ AC HL  L  G+  H Y+ R      + + +ALVDMYSKCGN
Sbjct: 298 MVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGN 357

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M   +  +WT++I G A++G G +++ LF  MK+ GV+PN+V FV+VL  
Sbjct: 358 IQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 417

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  VGLV+E   +F+SM + YG+   LEHY  + DL GRAG+L+EA D I+KM ++P   
Sbjct: 418 CSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGS 477

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL++C ++KN E+ E  + K+  ++++N GAYVL+ N+YA +  W  +  +R  ++
Sbjct: 478 VWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVR 537

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG++K P CS IE+  + H F +GD +HP  + I   L  +  +++  GYVA+T+ V++
Sbjct: 538 KKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLH 597

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D++EE K + L  HSE++A+AFG+I+ + G  IR+ KN+R+C DCH   K ISK+  REI
Sbjct: 598 DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREI 657

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD +RFHHF  G CSC  YW
Sbjct: 658 IVRDNSRFHHFNRGSCSCGDYW 679



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 128/245 (52%), Gaps = 4/245 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A+++  +K   +D  RK+F+ MP +D +++N ++AGYAQ G   +AL +   M 
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D+K +  ++ SVL   +    + +G+  H Y+ R  +   V +G++LVDMY+K   + 
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  +  R+  +W S++ G   NG   ++L LF  M  A VRP  V F SV+  C 
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  +  G++ H   +R  +G   ++     LVD+Y + G +  A  + ++M +     +
Sbjct: 319 HLATLHLGKQLHGYVLRGGFGRNIFIA--SALVDMYSKCGNIQAARKIFDRMNLHDEV-S 375

Query: 261 WGALL 265
           W A++
Sbjct: 376 WTAII 380



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 2/221 (0%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +F  +     +AW +++  +        AL  F  M+      +     SVL +CT +  
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           L  G   H +I R  +   +  G AL++MYSK   ++     F  M  ++V ++ +VI G
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
            A +G  E +L +   M  + ++P+  T  SVL        V +G+E    + R+ GI+ 
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK-GIDS 239

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            +     LVD+Y ++ R++++  V + +  +  + +W +L+
Sbjct: 240 DVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLV 279



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 51/186 (27%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +   +K+FD ++  D V  TA+I                              
Sbjct: 351 MYSKCGNIQAARKIFDRMNLHDEVSWTAII------------------------------ 380

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             G+A  G   EA+ LF  M+   VK N+V+ V+VL+AC+H+G +D+  W +        
Sbjct: 381 -MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA-WGYFN------ 432

Query: 121 KMTVTLG--------TALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAG 171
            MT   G         A+ D+  + G + +A DF   M+ E     W++++   +++   
Sbjct: 433 SMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH--- 489

Query: 172 EKSLEL 177
            K+LEL
Sbjct: 490 -KNLEL 494



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 2/156 (1%)

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
           T + +  Q +  H    R +  ++ T  + ++ +Y+    +++A+  F  ++   V  W 
Sbjct: 16  TRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWK 74

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           SVI          ++L  F  M+ +G  P+   F SVL+ C ++  +  G E        
Sbjct: 75  SVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG-ESVHGFIVR 133

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            G++  L     L+++Y +   +D    V   MP K
Sbjct: 134 LGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRK 169


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/446 (45%), Positives = 275/446 (61%), Gaps = 29/446 (6%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDP----IAWNAMLAGYAQCGKSREALH 75
           E D   + +++    K G++    ++FDE P+R+     + WN                 
Sbjct: 170 EFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNG---------------- 213

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
                    V+ N++++VS L ACT +GAL  G   H Y+  N  ++   +GTALVDMY+
Sbjct: 214 ---------VRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYA 264

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCGN+  A   F   K +++ TW+ +I G A++G  +++L+ F  MK AG+ P+EV F++
Sbjct: 265 KCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLA 324

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C   G V++G   F+SMR +Y IEP ++HY  +VDL GRAGRLDEAL  I  MP+ 
Sbjct: 325 ILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPIN 384

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P    WGAL  ACR +KN EM EL + KL++LE K+ G+YV LSN+YA    W+ V  VR
Sbjct: 385 PDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVR 444

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
            +MK +GV+K PG S IEV+ +VH F AGD  H R  EI + L EI+   K  GY+  T 
Sbjct: 445 TLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETA 504

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V+++IEEEEKED L  HSEK+A+AFGLIS   G  IRIVKNLRVC DCH + K  SK+ 
Sbjct: 505 WVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLS 564

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REII+RD  RFHHFK+G CSC  YW
Sbjct: 565 RREIILRDIKRFHHFKDGTCSCGDYW 590



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 22/223 (9%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +IS+      +D A  +F      +   +NA++ G A+  +   ++  F LM    ++
Sbjct: 76  TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            + +++  VL +   L  +  GR  H  + +  L+    +  +LVDMY K G +   +  
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQL 195

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F    +RN                     +  S++   GVRPN++T VS L  C  +G +
Sbjct: 196 FDESPQRN---------------------KAESILLWNGVRPNDLTVVSALLACTKIGAL 234

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           + G E   +     G +        LVD+Y + G +  A  V 
Sbjct: 235 QVG-ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 276



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 24/180 (13%)

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           E   + ++ A   L  L Q    H  I  + L     + T L+       +++ A+  F 
Sbjct: 40  ETHFIPLIHASNTLPQLHQ---IHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFR 96

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR---------- 198
                N++ + ++I GLA N   E S+  F LM +  +RP+ +T   VL+          
Sbjct: 97  CFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGL 156

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           G C+ G V +    FDS  R             LVD+Y + G L   L + ++ P +  A
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRV-----------SLVDMYVKIGELGFGLQLFDESPQRNKA 205


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/460 (43%), Positives = 297/460 (64%), Gaps = 7/460 (1%)

Query: 8   LGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           L  C++V   I    +E DVV  T ++    + G V++AR +FD MPERD +AWNAM++ 
Sbjct: 126 LKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISC 185

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y+Q G  +EAL ++  M+  +V ++  ++V +LS+C+H+GAL+ G   H       L   
Sbjct: 186 YSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRN 245

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V +G AL+DMY+KCG+++ A++ F GM  R+ +TW S+I G  ++G G++++  F+ M +
Sbjct: 246 VFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQMLE 304

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           AGVRPN + F+ +L GC   GLVEEG E F  M  ++ ++P ++HYGC+VD+YGRAG+L+
Sbjct: 305 AGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLE 364

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           +AL++I   P +     W  LL++ +++KN  +GE+A R L +L   N G  VLL+ IYA
Sbjct: 365 KALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYA 424

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            + +   V  +R+++K +G+K  PG S IEV  +VH F   D++HP    I   L E++ 
Sbjct: 425 GANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTH 484

Query: 364 RLKLAGYVANTNPVMY--DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
           +  +AGYV + +  ++     EE  E +   HSEK+AIAFGL    EG  +RIVKNLRVC
Sbjct: 485 KATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVC 544

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH+ TK +S+ FNR+IIVRDR RFHHFK G CSC+ YW
Sbjct: 545 RDCHEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           + P +        A +  G +  A+ +F  +      AWN+++ G+AQ     +A+  ++
Sbjct: 39  NHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYN 98

Query: 79  LMQIHDVKLNEVSMVS-VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M    V   +    S  L AC  + AL +    H  I R   +  V + T LV  Y + 
Sbjct: 99  RMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRN 158

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +  A   F  M ER++  W ++I   +  G  +++L ++  M+   V  +  T V +L
Sbjct: 159 GCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLL 218

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  VG +  G +    +  E G+   +     L+D+Y + G LD AL+V N MP    
Sbjct: 219 SSCSHVGALNMGVK-LHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMPRD-- 275

Query: 258 AGAWGALL 265
           A  W +++
Sbjct: 276 AFTWNSMI 283


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 296/437 (67%), Gaps = 2/437 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI--HD 84
           T ++   A+ G V  A ++FD+MP ++ ++W+AM+A Y++ GK  EAL LF  M +   D
Sbjct: 222 TTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQD 281

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           +  N V+MVSVL AC  L AL+QG+  H YI R  L   + + +ALV +Y++CGN+    
Sbjct: 282 LLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGH 341

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M++R+V +W S+I    ++G G K++++F  M   G+ P+ ++FVSVL  C   G
Sbjct: 342 RVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAG 401

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           LVEEG+  F+SM R + I P +EHY C+VDL GRA RLDEA  +I+ M ++P    WG+L
Sbjct: 402 LVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSL 461

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L +CR++ N E+ E A+ +L ELE  N G YVLL++IYAE+K W+ V  V+ +++A+G++
Sbjct: 462 LGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQ 521

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PG S IE+ R+++ F + DE +P+  ++  +L ++S  +K  GYV +T  V+YD++ E
Sbjct: 522 KVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPE 581

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  +  HSEK+A+AFGLI+ K+G  IRI KNLR+C DCH VTK ISK  NREI+VRD 
Sbjct: 582 EKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDV 641

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFH F++G CSC  YW
Sbjct: 642 NRFHLFQDGVCSCGDYW 658



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 11/261 (4%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           + DG  + D    T +I+  ++   +D ARK+FD+  +R    WNA+       G  RE 
Sbjct: 105 IHDG-SDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREV 163

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           L L+  M    V  +  +   VL AC      +  L  GR  H +I R+  +  V + T 
Sbjct: 164 LDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTT 223

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS--LMKQAGVR 187
           L+DMY++ G +  A   F  M  +NV +W+++I   + NG   ++LELF   +++   + 
Sbjct: 224 LLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLL 283

Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           PN VT VSVL+ C  +  +E+G+  H   +RR  G++  L     LV +Y R G L+   
Sbjct: 284 PNSVTMVSVLQACAALAALEQGKLMHGYILRR--GLDSILPVVSALVTVYARCGNLELGH 341

Query: 247 DVINKMPMKPHAGAWGALLNA 267
            V  +M  K    +W +L+++
Sbjct: 342 RVFERME-KRDVVSWNSLISS 361



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 7/178 (3%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           ++ +CT   +L QG   H ++  +       L T L++MYS+  +++ A   F   ++R 
Sbjct: 84  LILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRT 143

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGR 210
           +Y W ++   L + G G + L+L+  M + GV  +  T+  VL+ C      V L+  GR
Sbjct: 144 IYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGR 203

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           E    + R +G E  +     L+D+Y R G +  A  V ++MP+K +  +W A++ AC
Sbjct: 204 EIHGHILR-HGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVK-NVVSWSAMI-AC 258


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/471 (41%), Positives = 300/471 (63%), Gaps = 12/471 (2%)

Query: 1   MYAELGCLGYCQKVFD--GIH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMP 50
           M+     L  C++++D   +H        E DV  ++A+I   +K G++  A K+F EM 
Sbjct: 386 MFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMM 445

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
             D + WN+++A +AQ     EALHL+  M+      ++ ++ SVL ACT L  L+ GR 
Sbjct: 446 TGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQ 505

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
           AHV++ +      + L  AL+DMY KCG++  A   F  M +++V +W+++I GLA NG 
Sbjct: 506 AHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGF 563

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
             ++L LF  MK  G +PN +T + VL  C   GLV EG  +F SM   YGI+P  EHYG
Sbjct: 564 SMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYG 623

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
           C++DL GRA +LD+ + +I++M  +P    W  LL+ACR  +N ++   A++++++L+ +
Sbjct: 624 CMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQ 683

Query: 291 NHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPR 350
           + GAYVLLSNIYA SK W+ V  VR+ MK +G++K PGCS IEV++++H F  GD++HP+
Sbjct: 684 DTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQ 743

Query: 351 YNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGV 410
            +EI   L +   RL  AGYV +TN V+ D+E E++ED+L  HSEK+AI FG++S  +  
Sbjct: 744 IDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEK 803

Query: 411 PIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            IRI KNL++C DCH   K+I+++  R I++RD  R+HHF++G CSC  YW
Sbjct: 804 TIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 9/255 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           + +F   + P       +I+   K   ++ A+ +FD+MPER+ ++W  M++ Y+    + 
Sbjct: 309 RHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLND 368

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
            A+ L   M    V  N  +  SVL AC  L  L Q    H +I +  L+  V + +AL+
Sbjct: 369 RAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQ---LHSWIMKVGLESDVFVRSALI 425

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           D+YSK G + +A+  F  M   +   W S+I   A +  G+++L L+  M++ G   ++ 
Sbjct: 426 DVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQS 485

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T  SVLR C  + L+E GR+ H   ++ +      L     L+D+Y + G L++A  + N
Sbjct: 486 TLTSVLRACTSLSLLELGRQAHVHVLKFDQD----LILNNALLDMYCKCGSLEDAKFIFN 541

Query: 251 KMPMKPHAGAWGALL 265
           +M  K    +W  ++
Sbjct: 542 RMA-KKDVISWSTMI 555



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 5/196 (2%)

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
            A+H+   M+   V  + ++   ++  C   GA+ +G+  H +I  N       L   L+
Sbjct: 268 SAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILI 327

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           +MY K   + +A   F  M ERNV +WT++I   +     ++++ L + M + GV PN  
Sbjct: 328 NMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMF 387

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TF SVLR C  +  +++      S   + G+E  +     L+D+Y + G L EAL V  +
Sbjct: 388 TFSSVLRACERLYDLKQ----LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFRE 443

Query: 252 MPMKPHAGAWGALLNA 267
           M M   +  W +++ A
Sbjct: 444 M-MTGDSVVWNSIIAA 458


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/435 (42%), Positives = 285/435 (65%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            ++IS  ++CG+++ ARK FD + E++ +++N ++  YA+   S EA  LF+ ++     
Sbjct: 289 NSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTG 348

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           +N  +  S+LS  + +GA+ +G   H  I ++  K  + +  AL+ MYS+CGN+  A   
Sbjct: 349 VNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQV 408

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M + NV +WTS+I G A +G   ++LE F  M +AGV PNEVT+++VL  C  VGL+
Sbjct: 409 FNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLI 468

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            EG +HF SM+ E+GI P +EHY C+VDL GR+G L+EA++++N MP K  A      L 
Sbjct: 469 SEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLG 528

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR++ N ++G+ A+  ++E +  +  AY+LLSN++A +  W+ V  +R+ MK + + K 
Sbjct: 529 ACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKE 588

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            GCS IEV+ +VH+F+ GD +HP+  EI   L +++ ++K  GY+ +T+ V++D+EEE+K
Sbjct: 589 AGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQK 648

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L +HSEK+A+A+G IS     PIR+ KNLRVC DCH   K  S V  +EI++RD NR
Sbjct: 649 EQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANR 708

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  YW
Sbjct: 709 FHHFKDGTCSCNDYW 723



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 3   AELGCLG-----YCQKVFDGIHEPDVVCQTAMISACAKC---GDVDLARKMFDEMPERDP 54
           AE+G L      +C  +  G+ + DV    +++   AKC   G VD ARK+FD MP  + 
Sbjct: 156 AEMGLLSLGRQFHCLVMKSGL-DLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 55  IAWNAMLAGYAQCGK-SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
           ++W A++ GY Q G   REA+ LF  M    VK N  +  SVL AC +L  +  G   + 
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
            + + RL     +G +L+ MYS+CGNM  A   F  + E+N+ ++ +++   A +   E+
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEE 334

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           + ELF+ ++ AG   N  TF S+L G   +G + +G E   S   + G +  L     L+
Sbjct: 335 AFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKG-EQIHSRILKSGFKSNLHICNALI 393

Query: 234 DLYGRAGRLDEALDVINKM 252
            +Y R G ++ A  V N+M
Sbjct: 394 SMYSRCGNIEAAFQVFNEM 412



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 15/268 (5%)

Query: 17  GIHEPDVVCQTAMISACAKC-GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           G  E DV    A+I    K  GD++ A K+FD MP+R+ + W  M+  + Q G SR+A+ 
Sbjct: 72  GYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVD 131

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M +     +  ++  V+SAC  +G L  GR  H  + ++ L + V +G +LVDMY+
Sbjct: 132 LFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYA 191

Query: 136 KC---GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK-SLELFSLMKQAGVRPNEV 191
           KC   G+++ A   F  M   NV +WT++I G   +G  ++ ++ELF  M Q  V+PN  
Sbjct: 192 KCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHF 251

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLDEALD 247
           TF SVL+ C  +  +  G + +  +     ++  L    C    L+ +Y R G ++ A  
Sbjct: 252 TFSSVLKACANLSDIWLGEQVYALV-----VKMRLASINCVGNSLISMYSRCGNMENARK 306

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTE 275
             + +  + +  ++  ++NA     N+E
Sbjct: 307 AFDVL-FEKNLVSYNTIVNAYAKSLNSE 333



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 9/223 (4%)

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           +RD ++W+A+++ YA   K+ EA+  F  M       NE     V  AC++   +  G+ 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 111 AHVYIERN-RLKMTVTLGTALVDMYSKC-GNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
              ++ +    +  V +G AL+DM+ K  G++  A   F  M +RNV TWT +I      
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G    +++LF  M  +G  P+  T   V+  C  +GL+  GR+ F  +  + G++  +  
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDV-C 181

Query: 229 YGC-LVDLYGRA---GRLDEALDVINKMPMKPHAGAWGALLNA 267
            GC LVD+Y +    G +D+A  V ++MP+  +  +W A++  
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITG 223


>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
          Length = 483

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/443 (45%), Positives = 279/443 (62%), Gaps = 59/443 (13%)

Query: 20  EPDVVCQTAMIS-ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           E DV  Q +++     KCGDV+ ARK+FD+MPE++ + W+ M++GYAQ     +A+ LF 
Sbjct: 99  EKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFK 158

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           ++Q   V+ NE  MV                       +N + + + LGTALVDMY++CG
Sbjct: 159 VLQSQGVRANETVMVI----------------------KNGMTLNLILGTALVDMYARCG 196

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +++KA+  F  + ER+  +WT++I GLAM+G  E+SL+ F+ M +AG+ P ++TF +VL 
Sbjct: 197 SIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS 256

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL+E                                    EA   + KMP+KP+A
Sbjct: 257 ACSHGGLLE------------------------------------EAERFVLKMPVKPNA 280

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL ACR++KN E+GE   + L++L  ++ G YVLLSNIYA +K W++V  +RQ+M
Sbjct: 281 PVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMM 340

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           KAKG+KK PG S+IE+D  VH+F  GD +HP  ++IE M  EI  R++ AGY  NT   +
Sbjct: 341 KAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADAL 400

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +DI+EEEKE  L +HSEK+AIAFG++  + G PIRIVKNLRVC DCH  TK+ISKVF RE
Sbjct: 401 FDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRE 460

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           +IVRDRNRFHHF++G CSC  YW
Sbjct: 461 LIVRDRNRFHHFRQGLCSCMDYW 483


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 281/447 (62%), Gaps = 5/447 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLF 77
           E D++    +I   AKC    +AR +FD +  +D   + W  M+ GYAQ G++ +AL LF
Sbjct: 409 EDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLF 468

Query: 78  H--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-LGTALVDMY 134
                Q   +K N  ++   L AC  LG L  GR  H Y  RN  +  V  +G  L+DMY
Sbjct: 469 AQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMY 528

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           SK G+++ A   F  MK RNV +WTS++ G  M+G GE++L LF  M++ G   + +TF+
Sbjct: 529 SKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFL 588

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            VL  C   G+V++G  +F  M + +GI P  EHY C+VDL GRAGRL+EA+++I  M M
Sbjct: 589 VVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSM 648

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +P A  W ALL+A R++ N E+GE A+ KL EL  +N G+Y LLSN+YA ++ W  V  +
Sbjct: 649 EPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARI 708

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R +MK  G++K PGCS I+  +    FF GD +HP   +I  +L ++ +R+K  GYV  T
Sbjct: 709 RSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQT 768

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
           +  ++D+++EEK D L +HSEK+A+A+G+++   G PIRI KNLR+C DCH     IS +
Sbjct: 769 SFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMI 828

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
            + EI++RD +RFHHFK+G CSC+ YW
Sbjct: 829 IDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 157/291 (53%), Gaps = 18/291 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERD----PIA 56
           MYA+   +    KVF+GI + DVV   AM++  ++ G  D A  +F  M E D     I 
Sbjct: 278 MYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W+A++AGYAQ G   EAL +F  MQ++ ++ N V++ S+LS C  +GAL  G+  H Y+ 
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 117 RNRLKMT-------VTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
           +N L +        + +   L+DMY+KC +   A   F  +  K++NV TWT +IGG A 
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 168 NGAGEKSLELFS--LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
           +G    +L+LF+    ++  ++PN  T    L  C  +G +  GR+ H  ++R E   E 
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEV 517

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            L    CL+D+Y ++G +D A  V + M ++ +  +W +L+    M+   E
Sbjct: 518 -LYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGE 566



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 129/215 (60%), Gaps = 8/215 (3%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSRE 72
           +G+     +C + +++   +CG +D A +MFDE+ ER   D ++WN++LA Y Q G+SR 
Sbjct: 156 NGLGSNVFICNS-IVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214

Query: 73  ALHL-FHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           AL + F +   + +KL  + +++V++L AC  + AL  G+  H +  RN L   V +G A
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNA 274

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV MY+KC  MN+A   F G+K+++V +W +++ G +  G+ + +L LF +M++  ++ +
Sbjct: 275 LVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLD 334

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
            +T+ +V+ G    G   E  + F  M+  YG+EP
Sbjct: 335 VITWSAVIAGYAQKGHGFEALDVFRQMQL-YGLEP 368



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 12/247 (4%)

Query: 30  ISACAKCGDVDLARKMFDEM-PERDPIAW-NAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           + A  +CG    A  +   + P    + W NA++    + G   + L  +  MQ      
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +   VL AC  + +L  G   H  +  N L   V +  ++V MY +CG ++ A   F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 148 WGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMK---QAGVRPNEVTFVSVLRGCC 201
             + ER   ++ +W S++      G    +L +   M       +RP+ +T V++L  C 
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            V  ++ G++ H  S+R     + ++ +   LV +Y +  +++EA  V   +  K    +
Sbjct: 246 SVFALQHGKQVHGFSVRNGLVDDVFVGN--ALVSMYAKCSKMNEANKVFEGIK-KKDVVS 302

Query: 261 WGALLNA 267
           W A++  
Sbjct: 303 WNAMVTG 309


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/442 (41%), Positives = 278/442 (62%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D V   +++    KCG ++ AR +FD+M ERD ++W  M+  Y + G+  E   LF  
Sbjct: 283 DSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH 342

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +   ++  N+ +   VL+AC  L A D G+  H Y+ R       +  +ALV MYSKCG+
Sbjct: 343 LMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGD 402

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + + ++++WTS++ G A +G  +K+L  F L+ ++G +P+ + F+ VL  
Sbjct: 403 IENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSA 462

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV++G E+F S++ ++G+   ++HY C++DL  RAG+  EA  +IN+MP+KP   
Sbjct: 463 CAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKY 522

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W ALL  CR++ N E+ + A++ L E+E +N   YV L+NIYA +       N+R+ M 
Sbjct: 523 IWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMD 582

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           ++G+ K PG S IE+ REVH F  GD +HP+  EI   L E+S+R+K  GYV +TN V++
Sbjct: 583 SRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLH 642

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E E+KE+ L  HSEK+A+AFG+IS   G PI++ KNLR C DCH+  K IS +  R+I
Sbjct: 643 DVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKI 702

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFH F+ G CSCK YW
Sbjct: 703 IVRDSNRFHCFEGGSCSCKDYW 724



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 3/266 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   +KVFD +   D+     MIS   K G+ + AR +FD+MP RD  +W A+
Sbjct: 162 MYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAI 221

Query: 61  LAGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G  Q  +  EAL L+ LMQ HD  K N+ ++ S L+A   + +L  G+  H +I R  
Sbjct: 222 ISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMG 281

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L     +  +L+DMY KCG++ +A   F  M+ER+V +WT++I     NG  E+   LF 
Sbjct: 282 LDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFR 341

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            +  + + PN+ TF  VL  C  +   + G++    M R  G + +      LV +Y + 
Sbjct: 342 HLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVR-VGFDSFSSAASALVHMYSKC 400

Query: 240 GRLDEALDVINKMPMKPHAGAWGALL 265
           G ++ A  V   +P +P   +W +LL
Sbjct: 401 GDIENAKSVFEILP-QPDLFSWTSLL 425



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 42/221 (19%)

Query: 67  CGKSR--EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           CG+SR  EA+ L + ++    K      +++L  C    AL +G+  H +I+ +   + +
Sbjct: 99  CGQSRLREAVQLLYRIE----KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGL 153

Query: 125 TLGTALVDMYSKC-------------------------------GNMNKAMDFFWGMKER 153
            +   L+DMY+KC                               GN  KA + F  M  R
Sbjct: 154 YISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR 213

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           + ++WT++I G   +   E++LEL+ LM K    + N+ T  S L     +  +  G++ 
Sbjct: 214 DNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKI 273

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           H   MR   G++     +  L+D+YG+ G ++EA  + +KM
Sbjct: 274 HGHIMR--MGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKM 312


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 283/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+++  AKCG ++ + ++F+ + +R+ ++WN ++  Y Q G    AL LF  M 
Sbjct: 282 DVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNML 341

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            + V+  EV+  S+L AC  L AL+ G   H    +      V +G AL+DMY+KCG++ 
Sbjct: 342 RYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIK 401

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  R+  +W ++I G +M+G G +++++F+LMK+   +P+E+TFV VL  C 
Sbjct: 402 DARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACS 461

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G ++EG+++F SM+++YGIEP +EHY C+V L GR+G LD+A+  I  +P +P    W
Sbjct: 462 NTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIW 521

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL AC ++ + E+G +++++++ELE ++  ++VLLSNIYA ++ W  V  VR+ MK K
Sbjct: 522 RALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRK 581

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK PG S IE    VH F   D +H     I  ML  ++ + + AGY    N V+ D+
Sbjct: 582 GVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDV 641

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           E++EKE  L  HSE++A+AFGL+ +  G PIRI+KNLR+C DCH V K+ISK+  R+IIV
Sbjct: 642 EDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIV 701

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF+ G CSC  YW
Sbjct: 702 RDMNRFHHFENGSCSCADYW 721



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 137/254 (53%), Gaps = 4/254 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E D+     ++    +CGD D A + F +MP+ D I W+ M++ +AQ G+S +AL +F 
Sbjct: 178 YERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFC 237

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V  N+ +  SVL A   + +LD  +  H +  +  L   V +  AL+  Y+KCG
Sbjct: 238 QMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCG 297

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + ++M+ F  + +RN  +W ++I      G GE++L LFS M +  V+  EVT+ S+LR
Sbjct: 298 CIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILR 357

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +  +E G + H  + +  YG +  + +   L+D+Y + G + +A  + + + ++  
Sbjct: 358 ACATLAALELGLQVHCLTAKTIYGQDVAVGN--ALIDMYAKCGSIKDARFMFDMLDLRDK 415

Query: 258 AGAWGALLNACRMY 271
             +W A++    M+
Sbjct: 416 V-SWNAIICGYSMH 428



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 12/197 (6%)

Query: 6   GCL---GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           GC+   GY    F G         TA+I A +  G V +AR++FDE+  +D ++W  M+A
Sbjct: 70  GCVLKVGYGSNTFIG---------TALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
            YA+     EAL  F  M++   K N  +   VL AC  L   D G+  H  + +   + 
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
            + +G  L+++Y++CG+ + A   F  M + +V  W+ +I   A +G  EK+LE+F  M+
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 183 QAGVRPNEVTFVSVLRG 199
           +A V PN+ TF SVL+ 
Sbjct: 241 RAFVIPNQFTFSSVLQA 257



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 5/211 (2%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +FDEMPER+ +++  ++ GYAQ  K  EA  LF  +     +LN     +VL     +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
            + GR  H  + +        +GTAL+D YS  G ++ A + F  +  +++ +WT +I  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIE 223
            A N    ++LE FS M+ AG +PN  TF  VL+ C  +   + G+  H   ++  Y  +
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 224 PWLEHYGC-LVDLYGRAGRLDEALDVINKMP 253
            ++   G  L++LY R G  D+A      MP
Sbjct: 182 LYV---GVGLLELYTRCGDNDDAWRAFGDMP 209



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   +C      I+  DV    A+I   AKCG +  AR MFD +  RD ++WNA++ G
Sbjct: 366 ELGLQVHCLTA-KTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICG 424

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKM 122
           Y+  G   EA+ +F+LM+    K +E++ V VLSAC++ G LD+G+     ++++  ++ 
Sbjct: 425 YSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEP 484

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            +   T +V +  + GN+++A+ F   +  E +V  W +++G 
Sbjct: 485 CMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGA 527


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 279/446 (62%), Gaps = 13/446 (2%)

Query: 29  MISACA-KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           MI  C+    D +  R +F ++ + +   WN M+ G        +A+  + LM+      
Sbjct: 51  MILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLP 110

Query: 88  NEVSMVSVLSACTHLGALDQG---------RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           N  +   VL AC  L  L  G          W H  I    +   V +GT+LVDMY+KCG
Sbjct: 111 NNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCG 170

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK---QAGVRPNEVTFVS 195
           NM KA   F GM E+++ +W ++I G A+NG  +++++LF  M+   + G++P+  TF+ 
Sbjct: 171 NMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIG 230

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L GC   GLV+EGR +F+SM R + + P +EHYGC+VDL GRAG LDEA  +I  MPM+
Sbjct: 231 LLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPME 290

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
            +A  WGALL ACR++++T++ ELA ++L+ELE  N G YVLLSNIY+ +  WD    VR
Sbjct: 291 ANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVR 350

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
             M  K ++K PGCS IEVD  VHEF  GD+ HP   +I   L E+++++K+AGYV  T+
Sbjct: 351 LSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTD 410

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V++DIEEEEKE  L  HSEK+AIAFGLIS      IR+VKNLRVC DCH   K+IS + 
Sbjct: 411 FVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSIT 470

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REI VRD NRFH F+EG CSC  YW
Sbjct: 471 GREITVRDNNRFHCFREGSCSCNDYW 496



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 5/148 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   T+++   AKCG+++ AR +FD MPE+D ++W AM+ GYA  G  +EA+ LF  MQ
Sbjct: 155 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQ 214

Query: 82  IHD---VKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             +   +K +  + + +L  CTH G +D+G R+ +       L  ++     +VD+  + 
Sbjct: 215 RENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRA 274

Query: 138 GNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           G +++A      M  E N   W +++G 
Sbjct: 275 GLLDEAHQLIRNMPMEANAIVWGALLGA 302


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/452 (42%), Positives = 280/452 (61%), Gaps = 1/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  GI + D V  +A+    AK G +D AR +FD MP RD ++W AML  Y   G+
Sbjct: 185 HCHVVRRGI-DADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGR 243

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             E   LF  M    +  NE +   VL AC    +   G+  H  + ++R   +   G+A
Sbjct: 244 DGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSA 303

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV MYSK G+M  AM  F GM + ++ +WT++I G A NG  +++L  F ++  +G RP+
Sbjct: 304 LVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPD 363

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            VTFV VL  C   GLV++G   F S++ +YGIE   +HY C++DL  R+G  + A D+I
Sbjct: 364 HVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMI 423

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           N MP+KP+   W +LL  CR++KN  +   A+  L E+E +N   YV L+NIYA    +D
Sbjct: 424 NTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVGLFD 483

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V N+R+ M+ +G+ K+P  S IEV   VH F  GD++HP+  EI  +L ++  +++  G
Sbjct: 484 EVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMREEG 543

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YVA+T  V++D+E+E+K+  +  HSE++A+AFG+I+  +G PI++ KNLR+C DCH   K
Sbjct: 544 YVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICGDCHTTIK 603

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +ISK+  REIIVRD NRFHHFK G CSC+ YW
Sbjct: 604 LISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 6/257 (2%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCG-DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +   +   DV     +++A  +    +  AR +FD MP RD  +W+A+++ + + G+ R 
Sbjct: 83  LLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRA 142

Query: 73  ALHLFHLMQIH---DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           AL ++  M          NE +  S L+A T       GR  H ++ R  +     + +A
Sbjct: 143 ALAIYRRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSA 202

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L DMY+K G ++ A   F  M  R+V +WT+++      G   +   LF  M ++G+ PN
Sbjct: 203 LADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPN 262

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E T+  VLR C      + G++    M +    +        LV +Y + G +  A+ V 
Sbjct: 263 EFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAG-SALVHMYSKYGDMGTAMRVF 321

Query: 250 NKMPMKPHAGAWGALLN 266
             MP KP   +W A+++
Sbjct: 322 RGMP-KPDLVSWTAMIS 337



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 44/223 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +G   +VF G+ +PD+V  TAMIS                             
Sbjct: 307 MYSKYGDMGTAMRVFRGMPKPDLVSWTAMIS----------------------------- 337

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA-HVYIERNR 119
             GYAQ G+  EALH F ++     + + V+ V VLSAC H G +D+G    H   ++  
Sbjct: 338 --GYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYG 395

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELF 178
           ++ T      ++D+ S+ G   +A D    M  + N + W S++GG  ++    K++ L 
Sbjct: 396 IEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIH----KNVRLA 451

Query: 179 SLMKQA--GVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
               +A   + P N  T+V++      VGL +E     ++MRR
Sbjct: 452 WWAAEALFEIEPENPATYVTLANIYASVGLFDE----VENMRR 490


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/442 (46%), Positives = 295/442 (66%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   QTA++   +KCG + +ARK+FD + +R  +AWNAM++GY Q G +  A+ ++  MQ
Sbjct: 143 DRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQ 202

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  V  +  + V+ LSAC   GALD GR     I  +++ ++V LG+ALV+MY++CG ++
Sbjct: 203 VAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVS 262

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA D+F  ++ERNV TWTS+I G  M+G G ++++LF LM++ G  PN+VTFV+VL  C 
Sbjct: 263 KARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACA 322

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGA 260
             GLV EGR  FDSM+R YG+ P  EHY  +VD+YGRAG LD+A+  I + +P +P    
Sbjct: 323 HAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEV 382

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W A+L AC+M+KN  +G   + +L+ LE +N    VLLSNIYA S   + V  VR +M  
Sbjct: 383 WTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIK 442

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + +KK  G S+IE+    H F  G+++H +  EI   L E+  R+  AGYV  T+ V+++
Sbjct: 443 RRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEELIHRISDAGYVPETDSVLHE 502

Query: 381 IEEEEKEDTLCKHSEKVAIAFGL-ISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           +EEEE+E  L  HSEK+A+A+GL +S     PIR++KNLR+C DCH   K +S V +REI
Sbjct: 503 LEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLRICGDCHLAIKFMSSVESREI 562

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD++RFHHFK+GKCSC  YW
Sbjct: 563 IVRDKHRFHHFKDGKCSCLEYW 584



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 101/241 (41%), Gaps = 73/241 (30%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMI------------------------------ 30
           +Y++ G L   +K+FD I +  VV   AMI                              
Sbjct: 153 LYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSAT 212

Query: 31  -----SACAKCGDVDLARKM-----------------------------------FDEMP 50
                SACA+ G +DL R++                                   FD + 
Sbjct: 213 FVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQ 272

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           ER+ + W +M+AGY   G  REA+ LFHLM+      N+V+ V+VL+AC H G +++GR 
Sbjct: 273 ERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGLVNEGRN 332

Query: 111 AHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
           A   ++R   L        ++VDMY + G ++ AM F      +E     WT+++G   M
Sbjct: 333 AFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGACKM 392

Query: 168 N 168
           +
Sbjct: 393 H 393



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P  D    +++    A  G   EA+  +  +    +  +  +  +   AC  L AL  G 
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGM 129

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
             H +           + TALV +YSKCG +  A   F  +++R+V  W ++I G   NG
Sbjct: 130 AVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNG 189

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEH 228
             E+++E++  M+ A V P+  TFV+ L  C   G ++ GRE     +  +  +  +L  
Sbjct: 190 LAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLG- 248

Query: 229 YGCLVDLYGRAGRLDEALDVINKM 252
              LV++Y R G + +A D  +++
Sbjct: 249 -SALVNMYARCGLVSKARDWFDRL 271


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/452 (46%), Positives = 292/452 (64%), Gaps = 13/452 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D     +++   A CG +DLA KMF +M ER+ ++WN M+  YA+ G    AL +F  
Sbjct: 163 ESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGE 222

Query: 80  MQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI----ERNRLKMTVTLGTALVDMY 134
           MQ +HD   +  +M SV+SAC  LGAL  G W H YI    ++N +   V + T LVDMY
Sbjct: 223 MQRVHDP--DGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVD-DVLVNTCLVDMY 279

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTF 193
            K G +  A   F  M  R++  W S+I GLAM+G  + +L  +  ++K   + PN +TF
Sbjct: 280 CKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITF 339

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           V VL  C   G+V+EG  HFD M +EY +EP LEHYGCLVDL+ RAGR++EAL+++++M 
Sbjct: 340 VGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMS 399

Query: 254 MKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETK--NHGAYVLLSNIYAESKNWDR 310
           +KP A  W +LL+AC + Y + E+ E  ++++ E E    + G YVLLS +YA +  W+ 
Sbjct: 400 IKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYASACRWND 459

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V  +R++M  KGV K PGCS+IE+D  VHEFFAGD THP+   I  ++ EI  +L+  GY
Sbjct: 460 VGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVVTEIEEKLESIGY 519

Query: 371 VAN-TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           + + +   M D   + K +TL  HSE++AIAFG+++ K  VPIR+ KNLRVC DCH VTK
Sbjct: 520 LPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKNLRVCNDCHRVTK 579

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +IS+++N EIIVRDR RFHHFK+G CSC  YW
Sbjct: 580 LISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 115/243 (47%), Gaps = 12/243 (4%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS---REALHLFHLMQIHDVKL---NEVS 91
           ++  A ++F   P  +   WN ++  YA+   +    +A+ L+  M   + K    +  +
Sbjct: 74  NLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHT 133

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
              VL AC +  +L +G+  H ++ ++  +    +  +LV  Y+ CG ++ A   F+ M 
Sbjct: 134 FPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMS 193

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR- 210
           ERN  +W  +I   A  G  + +L +F  M++    P+  T  SV+  C  +G +  G  
Sbjct: 194 ERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLGLW 252

Query: 211 EHFDSMRR--EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            H   +++  +  ++  L +  CLVD+Y ++G L+ A  V   M  +    AW +++   
Sbjct: 253 VHAYILKKCDKNMVDDVLVN-TCLVDMYCKSGELEIAKQVFESMAFRD-LNAWNSMILGL 310

Query: 269 RMY 271
            M+
Sbjct: 311 AMH 313


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 281/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV   ++++   AK   ++ + ++F  +  RD I+WN+++AGY Q G+  EAL LF  
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    VK   V+  SV+ AC HL  L  G+  H Y+ R      + + +ALVDMYSKCGN
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M   +  +WT++I G A++G G +++ LF  MK+ GV+PN+V FV+VL  
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  VGLV+E   +F+SM + YG+   LEHY  + DL GRAG+L+EA + I+KM ++P   
Sbjct: 454 CSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGS 513

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL++C ++KN E+ E  + K+  ++++N GAYVL+ N+YA +  W  +  +R  M+
Sbjct: 514 VWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMR 573

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG++K P CS IE+  + H F +GD +HP  ++I   L  +  +++  GYVA+T+ V++
Sbjct: 574 KKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLH 633

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D++EE K + L  HSE++A+AFG+I+ + G  IR+ KN+R+C DCH   K ISK+  REI
Sbjct: 634 DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREI 693

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD +RFHHF  G CSC  YW
Sbjct: 694 IVRDNSRFHHFNRGNCSCGDYW 715



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 19/276 (6%)

Query: 1   MYAELGCLGY---CQKVFDGIHE-------PDVVCQTAMISACAKCGDVDLARKMFDEMP 50
           MYA+L  +G       VFD + +        DV  +T     C     +D  R++F+ MP
Sbjct: 149 MYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET-----CIMPFGIDSVRRVFEVMP 203

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
            +D +++N ++AGYAQ G   +AL +   M   D+K +  ++ SVL   +    + +G+ 
Sbjct: 204 RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE 263

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
            H Y+ R  +   V +G++LVDMY+K   +  +   F  +  R+  +W S++ G   NG 
Sbjct: 264 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGR 323

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
             ++L LF  M  A V+P  V F SV+  C  +  +  G++ H   +R  +G   ++   
Sbjct: 324 YNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIA-- 381

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             LVD+Y + G +  A  + ++M +     +W A++
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEV-SWTAII 416



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 39/180 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +   +K+FD ++  D V  TA+I                              
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAII------------------------------ 416

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV--YIERN 118
             G+A  G   EA+ LF  M+   VK N+V+ V+VL+AC+H+G +D+  W +     +  
Sbjct: 417 -MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA-WGYFNSMTKVY 474

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLEL 177
            L   +    A+ D+  + G + +A +F   M  E     W++++   +++    K+LEL
Sbjct: 475 GLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH----KNLEL 530



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 107/256 (41%), Gaps = 13/256 (5%)

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
           T + +  Q +  H    R +  ++ T  + ++ +Y+    +++A+  F  +K   V  W 
Sbjct: 16  TRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWK 74

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           SVI          K+L  F  M+ +G  P+   F SVL+ C ++  +  G E        
Sbjct: 75  SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG-ESVHGFIVR 133

Query: 220 YGIEPWLEHYGCLVDLYGR---AGRLDEALDVINKMPMK-PHAGAWGALLNACRMYKNTE 275
            G++  L     L+++Y +    G      +V ++MP +  ++G        C M     
Sbjct: 134 LGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM----P 189

Query: 276 MGELASRKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK--KLPGCSVI 332
            G  + R++ E +  K+  +Y  +   YA+S  ++  + + + M    +K       SV+
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249

Query: 333 EVDREVHEFFAGDETH 348
            +  E  +   G E H
Sbjct: 250 PIFSEYVDVIKGKEIH 265


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/465 (43%), Positives = 293/465 (63%), Gaps = 11/465 (2%)

Query: 6   GCLGYCQKVFDGIHE--------PDVVCQTAMISACAKCGDVDLARKMFDEMPERDP-IA 56
           G LGY  +V   +HE         +V    A+I+  AKC   DLA ++F+E+  +   I+
Sbjct: 231 GELGYLDEV-RRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WNAM+ G+ Q     +A  LF  MQ+ +V+ +  ++VSV+ A   +    Q RW H Y  
Sbjct: 290 WNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSI 349

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R++L   V + TAL+DMYSKCG ++ A   F   ++R+V TW ++I G   +G G+ ++E
Sbjct: 350 RHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVE 409

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  MK  G  PNE TF+SVL  C   GLV+EG+++F SM+++YG+EP +EHYG +VDL 
Sbjct: 410 LFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLL 469

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG+LDEA   I  MP++P    +GA+L AC+++KN E+ E +++ + EL  +    +V
Sbjct: 470 GRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHV 529

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           LL+NIYA +  W  V  VR  M+ KG++K PG S+I++  EVH F++G   H    +I  
Sbjct: 530 LLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYA 589

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L ++   +K  GYV +T+ + +D+E++ K   L  HSEK+AIA+GLI    G  I+I K
Sbjct: 590 RLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKK 648

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLRVC DCH+ TK+IS +  REII+RD  RFHHFK+GKCSC  YW
Sbjct: 649 NLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 140/284 (49%), Gaps = 8/284 (2%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +  TA+ +   KC     AR++FD MP RD +AWNA++AGYA+ G    A+     MQ  
Sbjct: 52  IASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGE 111

Query: 84  D--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +   + + V++VSVL AC    AL   R  H +  R  L   V + TA++D Y KCG + 
Sbjct: 112 EGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVE 171

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  RN  +W ++I G A NG   +++ LF  M Q GV   + + ++ L+ C 
Sbjct: 172 AARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACG 231

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G ++E R   + + R  G+   +     L+  Y +  R D A  V N++  K    +W
Sbjct: 232 ELGYLDEVRRVHELLVR-VGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISW 290

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKN--HGAYVLLSNIYA 303
            A++     +   E  E A R    ++ +N    ++ L+S I A
Sbjct: 291 NAMILG---FTQNECPEDAERLFARMQLENVRPDSFTLVSVIPA 331



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 7/247 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA++ A  KCG V+ AR +FD MP R+ ++WNAM+ GYA  G + EA+ LF  M  
Sbjct: 154 VNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQ 213

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             V + + S+++ L AC  LG LD+ R  H  + R  L   V++  AL+  Y+KC   + 
Sbjct: 214 EGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADL 273

Query: 143 AMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           A   F   G K+  + +W ++I G   N   E +  LF+ M+   VRP+  T VSV+   
Sbjct: 274 AAQVFNELGNKKTRI-SWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAV 332

Query: 201 CVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             +    + R  H  S+R +   + ++     L+D+Y + GR+  A  + +    + H  
Sbjct: 333 ADISDPLQARWIHGYSIRHQLDQDVYV--LTALIDMYSKCGRVSIARRLFDSARDR-HVI 389

Query: 260 AWGALLN 266
            W A+++
Sbjct: 390 TWNAMIH 396



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           +  ++L  C     L  GR  H  +E   L       TAL +MY KC     A   F  M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMK--QAGVRPNEVTFVSVLRGCCVVGLVEE 208
             R+   W +V+ G A NG    ++E    M+  + G RP+ VT VSVL  C     +  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            RE H  ++R   G++  +     ++D Y + G ++ A  V + MP++ ++ +W A+++
Sbjct: 138 CREVHAFALRA--GLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR-NSVSWNAMID 193


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/462 (43%), Positives = 287/462 (62%), Gaps = 2/462 (0%)

Query: 2   YAELGCLGYCQKVF-DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +A  G +   ++ F D   + + V  TAM+S     G V+ A + F+ MP R  ++WNA+
Sbjct: 156 FAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAV 215

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY +  ++ +AL +F  M +  DV+ NE ++ SVL  C++L AL  GR  H +  +  
Sbjct: 216 VAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLP 275

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L   VT GT+LV MY KCG+++ A   F  M+ R+V  W ++I G A +G G +++ELF 
Sbjct: 276 LSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFE 335

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK  GV PN +TFV+VL  C   G+ + G + F+ M+  YGIE  ++HY C+VDL  RA
Sbjct: 336 KMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRA 395

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L+ A+ +I  MP +PH  A+G LLNA R+YKN E  E A+ KL+E   +N GAYV L+
Sbjct: 396 GSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLA 455

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA +  W  V  VR+ MK   V K PG S +E++  +H F + D  HP+ + I   L 
Sbjct: 456 NIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLC 515

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++  R+K  GYV + +  ++D++E  K   L +HSEK+AIAFGL+S   G+ +RI KNLR
Sbjct: 516 QLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLR 575

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH   K+ISK+ +REII+RD  RFHHF+ G CSC  YW
Sbjct: 576 VCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYA 65
           L   + +FD I  PD V    ++S     GDV  AR +F  MP   R+  +WN ML+G +
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLS 126

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + G   EA  +F  M       N +S  +++S   H G +     A    E    K    
Sbjct: 127 RSGAVGEARAVFLAMPAR----NSISWNAMVSCFAHAGDMCA---AEECFEDAPDKENAV 179

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQA 184
           L TA+V  Y   G++ KAM FF  M  R++ +W +V+ G   N   E +L +F ++++ A
Sbjct: 180 LWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDA 239

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            VRPNE T  SVL GC  +  +  GR+       +  +   +     LV +Y + G LD 
Sbjct: 240 DVRPNESTLSSVLLGCSNLSALGFGRQ-VHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDG 298

Query: 245 ALDVINKMPMKPHAGAWGALLN 266
           A  + ++M ++    AW A+++
Sbjct: 299 ACKLFSEMRIR-DVIAWNAMIS 319


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/442 (42%), Positives = 282/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+    A++   AKCG +  A  +F EM  +D ++WN M+ GY++     EAL+LF  
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE 443

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ ++ K N ++M  +L AC  L AL++G+  H +I RN   +   +  ALVDMY KCG 
Sbjct: 444 MQ-YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGA 502

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + E+++ +WT +I G  M+G G +++  F+ M+ +G+ P+EV+F+S+L  
Sbjct: 503 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 562

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL++EG   F+ MR    IEP  EHY C+VDL  RAG L +A   I  MP++P A 
Sbjct: 563 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 622

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL  CR+Y + ++ E  +  + ELE +N G YVLL+NIYAE++ W+ V  +R+ + 
Sbjct: 623 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 682

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G++K PGCS IE+  +VH F  GD +HP  N+IE++L +   R+K  G+       + 
Sbjct: 683 RRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALI 742

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
             ++ EKE  LC HSEK+A+AFG++SL  G  +R+ KNLRVC DCH++ K +SK+  R+I
Sbjct: 743 KADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDI 802

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD NRFHHFK+G CSC+G+W
Sbjct: 803 ILRDSNRFHHFKDGSCSCRGHW 824



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 157/306 (51%), Gaps = 23/306 (7%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGD------------------VDLA 42
           MY   G L   +++FD +    V     +++  AK G+                  V+ A
Sbjct: 145 MYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESA 204

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           RK+FDE+ +RD I+WN+M++GY   G S + L LF  M +  +  +  +MVSV++ C++ 
Sbjct: 205 RKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNT 264

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
           G L  GR  H Y  +      +TL   L+DMYSK GN+N A+  F  M ER+V +WTS+I
Sbjct: 265 GMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMI 324

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222
            G A  G  + S+ LF  M++ G+ P+  T  ++L  C   GL+E G++  + + +E  +
Sbjct: 325 AGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI-KENKM 383

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282
           +  L     L+D+Y + G + +A  V ++M +K    +W  ++     Y    +   A  
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIV-SWNTMIGG---YSKNSLPNEALN 439

Query: 283 KLVELE 288
             VE++
Sbjct: 440 LFVEMQ 445



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 58/282 (20%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           +N  +  + + G  R A+ L +     D++L   +  SVL  C  L ++  GR  H  I+
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 117 RNRLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMD 145
            N +++   LG+ LV MY  C                               GN  +++ 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 146 FFWGMKE------------------RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            F  M+E                  R+V +W S+I G   NG  EK L+LF  M   G+ 
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
            +  T VSV+ GC   G++  GR  H  +++  +G E  L +  CL+D+Y ++G L+ A+
Sbjct: 249 TDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNN--CLLDMYSKSGNLNSAI 306

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
            V   M  +    +W +++     Y    + +++ R   E+E
Sbjct: 307 QVFETMGERS-VVSWTSMIAG---YAREGLSDMSVRLFHEME 344


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 282/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++V    ++   AKCG++  + K+F+ M  RD I WN ++A           L +   M+
Sbjct: 509 NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 568

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  +  +M+S+L  C+ L A  QG+  H  I +  L+  V +G  L++MYSKCG++ 
Sbjct: 569 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 628

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  MK ++V TWT++I    M G G+K++  F  M+ AG+ P+ V FV+++  C 
Sbjct: 629 NSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 688

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG  +F  M+++Y IEP +EHY C+VDL  R+  LD+A D I  MP+KP +  W
Sbjct: 689 HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIW 748

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL+ACRM  +TE+ +  S +++EL   + G YVL+SN+YA    WD+V ++R+ +KA+
Sbjct: 749 GALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKAR 808

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK PGCS +E+  +V+ F  G +   ++ E+  +LG ++  +   GY+AN   V++DI
Sbjct: 809 GLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDI 868

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +E+EK D LC HSE++AIAFGL++ K G P++++KNLRVC DCH VTK ISK+  RE++V
Sbjct: 869 DEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLV 928

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH FK+G CSC  YW
Sbjct: 929 RDANRFHVFKDGACSCGDYW 948



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 144/284 (50%), Gaps = 10/284 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E D      +I+  AKCG++  ++++F  M  +D ++WN+M+  Y Q G   EA+ LF 
Sbjct: 406 YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK 465

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           +M+  DVK + V+ V +LS  T LG L  G+  H  + +      + +   LVDMY+KCG
Sbjct: 466 MMKT-DVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG 524

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M  ++  F  MK R++ TW ++I     +      L + S M+  GV P+  T +S+L 
Sbjct: 525 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 584

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C ++    +G+E    + +  G+E  +     L+++Y + G L  +  V   M  K   
Sbjct: 585 VCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKD-V 642

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELE----TKNHGAYVLL 298
             W AL++AC MY     G+ A R   E+E      +H A+V +
Sbjct: 643 VTWTALISACGMYGE---GKKAVRAFGEMEAAGIVPDHVAFVAI 683



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 142/259 (54%), Gaps = 6/259 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV+    ++S   K   +   R++FD+M  RD ++WN M+ GY+Q G   E++ LF  
Sbjct: 307 KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 366

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M ++  K + +++ S+L AC HLG L+ G++ H Y+  +  +   T    L++MY+KCGN
Sbjct: 367 M-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 425

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  + + F GMK ++  +W S+I     NG+ +++++LF +MK   V+P+ VT+V +L  
Sbjct: 426 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSM 484

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +G +  G+E H D  +   G    +     LVD+Y + G + ++L V   M  +   
Sbjct: 485 STQLGDLXLGKELHCDLAK--MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 542

Query: 259 GAWGALLNACRMYKNTEMG 277
             W  ++ +C   ++  +G
Sbjct: 543 -TWNTIIASCVHSEDCNLG 560



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 128/245 (52%), Gaps = 3/245 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A+I    +  D+D ARK+F+EMP RD ++WN++++GY   G   EAL +++  +
Sbjct: 208 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 267

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  +  +M SVL AC  LG++++G   H  IE+  +K  V +   L+ MY K   + 
Sbjct: 268 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLI 327

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  M  R+  +W ++I G +  G  E+S++LF  M     +P+ +T  S+L+ C 
Sbjct: 328 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACG 386

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +E G+   D M    G E        L+++Y + G L  + +V + M  K    +W
Sbjct: 387 HLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV-SW 444

Query: 262 GALLN 266
            +++N
Sbjct: 445 NSMIN 449



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 4/250 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFD-EMPERDPIAWNAMLAGYAQCGKSREALH 75
           G+H   V+    +I+  A   D   +  +F    P  +   WN+++      G   EAL 
Sbjct: 102 GLHHS-VIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALS 160

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           L+   Q   ++ +  +  SV++AC  L   +  +  H  +        + +G AL+DMY 
Sbjct: 161 LYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYC 220

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           +  +++KA   F  M  R+V +W S+I G   NG   ++LE++   +  GV P+  T  S
Sbjct: 221 RFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSS 280

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VLR C  +G VEEG +    +  + GI+  +     L+ +Y +   L +   + +KM ++
Sbjct: 281 VLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLR 339

Query: 256 PHAGAWGALL 265
             A +W  ++
Sbjct: 340 D-AVSWNTMI 348



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     +I   +KCG +  + ++F  M  +D + W A+++     G+ ++A+  F  
Sbjct: 608 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGE 667

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+   +  + V+ V+++ AC+H G +++G  + H   +  +++  +     +VD+ S+  
Sbjct: 668 MEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSA 727

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGE 172
            ++KA DF   M  + +   W +++    M+G  E
Sbjct: 728 LLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 762


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/455 (41%), Positives = 284/455 (62%), Gaps = 3/455 (0%)

Query: 10  YCQKVFDGIHEP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           +C  V  GI     D V  +A+    AKCG VD AR++FD MP RD ++W AM+  Y   
Sbjct: 187 HCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDG 246

Query: 68  GKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
           G+  E   LF H+++   V+ NE +   VL AC        GR  H  + ++    +   
Sbjct: 247 GRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFA 306

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            +AL+ MYSKCG+M  A+  F  M + ++ +WT+VI G A NG  E++L  F +  ++G+
Sbjct: 307 ESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGI 366

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           +P+ VTFV VL  C   GLV++G E F S++ +Y IE   +HY C++DL  R+G+ + A 
Sbjct: 367 KPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAE 426

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
            +I  M +KP+   W +LL  CR++KN  +   A+  L E+E +N   YV L+NIYA   
Sbjct: 427 KMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVG 486

Query: 307 NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
            +D V +VR+IM++KG+ K+P  S IEV R VH F  GD++HP+ +EI  +L ++  ++ 
Sbjct: 487 LFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMV 546

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
             GYVA+   V++D+E+E+KE  +  HSE++A+AFG+I+  EG PI++ KNLR+C DCH 
Sbjct: 547 EEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHA 606

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
             K+IS++  R+IIVRD NRFHHFK+G CSC+ YW
Sbjct: 607 AIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 10/261 (3%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCG-DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +F  I  PD+     +ISA ++    +  AR++FD MP+RD  AW+A+++GY + G+   
Sbjct: 85  LFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEA 144

Query: 73  ALHLFHLMQI---HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTL 126
           AL L+  MQ    +D   NE +  S L+A         GR  H ++ R  +        L
Sbjct: 145 ALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVL 204

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAG 185
            +AL DMY+KCG ++ A   F  M  R+  +WT+++      G G +   LF  +++  G
Sbjct: 205 WSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRG 264

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           VRPNE T+  VLR C    +   GR+    M +  G          L+ +Y + G +  A
Sbjct: 265 VRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKS-GTGDSCFAESALLRMYSKCGDMGSA 323

Query: 246 LDVINKMPMKPHAGAWGALLN 266
           + V   M  KP   +W A+++
Sbjct: 324 VRVFEAM-AKPDLVSWTAVIS 343



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 42/214 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +G   +VF+ + +PD+V  TA+IS                             
Sbjct: 313 MYSKCGDMGSAVRVFEAMAKPDLVSWTAVIS----------------------------- 343

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
             GYAQ G+  EAL  F +     +K + V+ V VLSAC H G +D+G    H   E+  
Sbjct: 344 --GYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYC 401

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMN---GAGEKSL 175
           ++ T      ++D+ S+ G   +A      M  + N + W S++GG  ++   G   ++ 
Sbjct: 402 IEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAA 461

Query: 176 E-LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           E LF +  +     N  T+V++      VGL +E
Sbjct: 462 EALFEIEPE-----NPATYVTLANIYASVGLFDE 490


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/433 (43%), Positives = 275/433 (63%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++SA AK G++ LA ++F          WNAM+A Y Q G SR+A+ LF  +    ++ N
Sbjct: 6   VLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPN 65

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
            V+++ VL AC  L AL  G+  H     + +   V + TA+VDMYSKCG +++A++ F 
Sbjct: 66  SVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFA 125

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            ++  +  +WT+++   A +G  +++L  F  M++ G +PN VTFV +L  C   GLVEE
Sbjct: 126 RIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEE 185

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           GR++FD M   YGI P  +HY C+VDL GRAG LDEA D +N+MP  PHA    +LL+AC
Sbjct: 186 GRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSLLSAC 245

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R YK+ + GE  +++++E        YV+L++IY  +  W+    +R +M  +GV+K PG
Sbjct: 246 RSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKDPG 305

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKED 388
            S IEV+  V EF AGD +H + N I   L E+S  +K AGYV +T+ V++D+ EEEKE 
Sbjct: 306 RSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAEEEKEQ 365

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
            L  HSEK+A+AFGL++   G PIR++KNLRVC DCHD  K+IS +  R I+ RD +RFH
Sbjct: 366 VLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRFH 425

Query: 449 HFKEGKCSCKGYW 461
           HF+ G CSC  YW
Sbjct: 426 HFENGVCSCGDYW 438



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +V   TA++   +KCG +D A + F  +   D ++W AMLA +AQ G    AL  F  
Sbjct: 98  DSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQR 157

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ    K N V+ V +LSAC+H G +++GR +  +   R  +         +VD+  + G
Sbjct: 158 MQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAG 217

Query: 139 NMNKAMDFF 147
            +++A DF 
Sbjct: 218 YLDEAEDFL 226


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 282/444 (63%), Gaps = 2/444 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV+  TA+++   KC  V+ AR  F+++   + ++W+AMLA YAQ G +R AL L+  
Sbjct: 42  EVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYRE 101

Query: 80  M--QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           M      +  N V+ +++L AC+ LGAL +GR  H  +        + +  ALV+ Y +C
Sbjct: 102 MGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRC 161

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A   F GM+ R+V +W+S+I   A  G  ++++EL+  M   G  P+++ F+SVL
Sbjct: 162 GSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVL 221

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   G+VE   + F S+  +  +EP LEHY C+VD+ GRAG+L +A D++  MP  P 
Sbjct: 222 FACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPG 281

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              +  +L+AC++Y + E GE A+  + EL+ +N   Y+ L+NIY+ +K       +R++
Sbjct: 282 PLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKL 341

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M+ +G+KK PGCS IEV   VHEF AGD+ HP+ +EI   +  + R++K AGY  +T  V
Sbjct: 342 MEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVV 401

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           + D+EE+EKE+ L  HSEK+AIAFGLIS   G P+RIVKNLRVC DCH  TK+ISKV  R
Sbjct: 402 LQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGR 461

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EI+VRD NRFHHF +G CSC  YW
Sbjct: 462 EILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 116/210 (55%), Gaps = 5/210 (2%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+I  V+ N+V+ V+VLS  T  G+L++GR  H  +    L++ V +GTALV+MY KC +
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPNEVTFVSVL 197
           + +A   F  +   NV +W++++   A NG    +LEL+  M  A  G+ PN VTF+++L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  +G + EGR+   +   E G +  L     LV+ YGR G L +A  V + M  +  
Sbjct: 121 DACSFLGALAEGRK-IHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGM-RRRD 178

Query: 258 AGAWGALLNA-CRMYKNTEMGELASRKLVE 286
             +W ++++A  +  +  E  EL  R L E
Sbjct: 179 VISWSSMISAFAQRGRVDEAMELYHRMLSE 208



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 32/148 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            Y   G LG  + VFDG+   DV+  ++MISA                            
Sbjct: 157 FYGRCGSLGDAKIVFDGMRRRDVISWSSMISA---------------------------- 188

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD-QGRWAHVYIERNR 119
              +AQ G+  EA+ L+H M       +++  +SVL AC++ G ++  G +    +   +
Sbjct: 189 ---FAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQ 245

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           ++ T+     +VD+  + G +  A D  
Sbjct: 246 VEPTLEHYACMVDVLGRAGKLRDAEDLL 273


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/449 (45%), Positives = 290/449 (64%), Gaps = 1/449 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF   +  +   Q A+++  AK     +ARK+FDEMP+R  IAWN+M++GY Q G + EA
Sbjct: 134 VFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEA 193

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + +F+ M+    + +  + VSVLSAC+ LG+LD G W H  I    ++M V L T+LV+M
Sbjct: 194 VEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNM 253

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           +S+CG++ +A   F  M E NV +WT++I G  M+G G +++E+F  MK  GV PN VT+
Sbjct: 254 FSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTY 313

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           V+VL  C   GL+ EGR  F SM++EYG+ P +EH+ C+VD++GR G L+EA   +  + 
Sbjct: 314 VAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLS 373

Query: 254 MKPHAGA-WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
            +    A W A+L AC+M+KN ++G   +  L+  E +N G YVLLSN+YA +   DRV 
Sbjct: 374 SEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVE 433

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
           +VR +M  +G+KK  G S I+V+   + F  GD++HP  NEI   L E+  R K AGY  
Sbjct: 434 SVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAP 493

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
                M+++EEEE+E  L  HSEK+A+AFGL+    GV +RIVKNLR+C DCH   K IS
Sbjct: 494 APESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFIS 553

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            V NREIIVRD+ RFHHF+EG CSC  YW
Sbjct: 554 VVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 4/168 (2%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LGC  +   V  GI   +VV  T++++  ++CGDV  AR +FD M E + ++W AM++G
Sbjct: 226 DLGCWLHECIVGTGI-RMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISG 284

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKM 122
           Y   G   EA+ +FH M+   V  N V+ V+VLSAC H G +++GR     +++   +  
Sbjct: 285 YGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVP 344

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY--TWTSVIGGLAMN 168
            V     +VDM+ + G +N+A  F  G+    +    WT+++G   M+
Sbjct: 345 GVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMH 392



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 44/293 (15%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V  G H    +    +  +CA  G +   R++F  + + D   +N+++   +  G S +A
Sbjct: 34  VVTGCHRSRALLTKLLTLSCAA-GSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDA 92

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           +  +  M    +  +  +  SV+ AC  L  L  G   H ++  +       +  ALV  
Sbjct: 93  VFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTF 152

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+K      A   F  M +R++  W S+I G   NG   +++E+F+ M+++G  P+  TF
Sbjct: 153 YAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATF 212

Query: 194 VSVLRGC--------------CVVGL---------------------VEEGREHFDSMRR 218
           VSVL  C              C+VG                      V   R  FDSM  
Sbjct: 213 VSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSM-N 271

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNAC 268
           E  +  W      ++  YG  G   EA++V ++M    + P+   + A+L+AC
Sbjct: 272 EGNVVSWT----AMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSAC 320


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 287/447 (64%), Gaps = 8/447 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    ++I   A CG + +A K+F++MP R  ++WN M+  Y Q G    AL LF  MQ
Sbjct: 160 DVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQ 219

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR---LKMTVTLGTALVDMYSKCG 138
            +  + +  +M S++SAC  +GAL  G WAH Y+ R     +   V + ++LVDMYSKCG
Sbjct: 220 -NSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCG 278

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVL 197
           ++  A   F  M + ++ +W S+I  LAM+G G+ +L+ FS L++     PN VTFV VL
Sbjct: 279 SLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVL 338

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   G+V +GR++FD M  +Y IEP LEHYGCLVDL  R+G +DEAL+++  M +KP 
Sbjct: 339 SACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPD 398

Query: 258 AGAWGALLNAC-RMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKNWDRVINVR 315
           A  W +LL+AC +     E+ E  + K+++ E T + G YV+LS +YA ++ W+ V  +R
Sbjct: 399 AVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIR 458

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN-T 374
           ++M   GV K PGCS IE+D   HEFFAGD +HPR  EI  ++  I  +L+  GY  + +
Sbjct: 459 KVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCS 518

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
              M D  +  K+ +L  HSE++AIAFGL++LK G P+RI KNLRVC DCH VTK+IS++
Sbjct: 519 QATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEI 578

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
           FN EII+RDRNRFHHFK G CSC  +W
Sbjct: 579 FNVEIIMRDRNRFHHFKHGMCSCMDFW 605



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 128/255 (50%), Gaps = 6/255 (2%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLFH-LMQIHDVKLNEVSMVSV 95
           D D A ++F+++   +   WN ++   A+   +  +A+ +F+ +++   V+ ++ +   +
Sbjct: 73  DFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFL 132

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           L AC ++ AL +GR AH  I +  L + V +G +L+ +Y+ CG ++ A+  F  M  R++
Sbjct: 133 LKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSL 192

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFD 214
            +W  +I     +G  E +L+LF  M Q    P+  T  S++  C  +G +  G   H  
Sbjct: 193 VSWNVMIDAYVQSGLFENALKLFVEM-QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAY 251

Query: 215 SMRREYG-IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            +R+  G +   +     LVD+Y + G L  A  V   MP K    +W +++ A  M+  
Sbjct: 252 VLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMP-KHDLNSWNSMILALAMHGR 310

Query: 274 TEMGELASRKLVELE 288
            +       +LVE+E
Sbjct: 311 GQAALQCFSRLVEME 325



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 3/166 (1%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
            Y  +   G    DV+  ++++   +KCG + +A+++F+ MP+ D  +WN+M+   A  G
Sbjct: 250 AYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHG 309

Query: 69  KSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTL 126
           + + AL  F  L+++     N V+ V VLSAC H G +  GR +  + +   +++  +  
Sbjct: 310 RGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEH 369

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAG 171
              LVD+ S+ G +++A++    M  + +   W S++       AG
Sbjct: 370 YGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAG 415


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 294/467 (62%), Gaps = 9/467 (1%)

Query: 1   MYAELGCLGYCQKVFDG--IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           MY++ G +   QK+ +   I   DV+  TA++    K GD++ AR++FD +  RD +AW 
Sbjct: 322 MYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWT 381

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GY Q G +++A+ LF  M     K N  ++ ++LS  + L +LD GR  H    R+
Sbjct: 382 AMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRS 441

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFF----WGMKERNVYTWTSVIGGLAMNGAGEKS 174
               +V++  AL+ MY+K G++N A   F    W   +R+  TWTS+I  LA +G GE++
Sbjct: 442 GNASSVSVSNALITMYAKSGSINDARWVFNLIHW---KRDTITWTSMIIALAQHGLGEEA 498

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           L LF  M + G++P+ +T+V VL  C  VGLVE+GR +++ M+  + I P   HY C++D
Sbjct: 499 LTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMID 558

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           L+GRAG L EA   I  MP++P   AWG+LL +C+++KN E+ E+A+ +L+ +E +N GA
Sbjct: 559 LFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGA 618

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEI 354
           Y  L+N+Y+    W+   N+R+ MK KGVKK  G S +++  +VH F   D  HP+ + I
Sbjct: 619 YSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAI 678

Query: 355 EVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
             M+ +I + +K  G+V +T  V++D+EEE KE  L  HSEK+AIAFGLI   E   +RI
Sbjct: 679 YEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRI 738

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +KNLRVC DCH   K ISK+  REIIVRD  RFHHFK G CSC+ YW
Sbjct: 739 MKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 35/301 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G     + VFD +          MIS+  + G VDLA+  F++M ERD ++WNAM
Sbjct: 189 MYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAM 248

Query: 61  LAGYAQCGKSREALHLFHLMQI-HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY Q G  REAL +F  M +    K ++ ++ S LSAC +L  L  G+  H +I R  
Sbjct: 249 ISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTE 308

Query: 120 LKMTVTLGTALVDMYSKC---------------------------------GNMNKAMDF 146
                 +G AL+ MYSK                                  G++N A   
Sbjct: 309 FDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRI 368

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++ R+V  WT++I G   NG  + ++ELF  M + G +PN  T  ++L     +  +
Sbjct: 369 FDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASL 428

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           + GR+   S  R  G    +     L+ +Y ++G +++A  V N +  K     W +++ 
Sbjct: 429 DHGRQIHASATRS-GNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMII 487

Query: 267 A 267
           A
Sbjct: 488 A 488



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 139/284 (48%), Gaps = 35/284 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            YA+ G +    +VFD +    V     ++S  AK G ++ A ++F+EMPE D ++W AM
Sbjct: 57  FYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAM 116

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G+   A+ +F  M   DV   + ++ +VL++C  +  L  GR  H ++ ++ L
Sbjct: 117 IVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGL 176

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK----------------------------- 151
              +++  +L++MY+K G+   A   F  MK                             
Sbjct: 177 SSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQ 236

Query: 152 --ERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
             ER+V +W ++I G   +G   ++L++FS ++  +  +P++ T  S L  C  +  ++ 
Sbjct: 237 MIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKL 296

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           G++ H   +R E+  + +      L+ +Y ++G ++ A  +I +
Sbjct: 297 GKQIHAHIIRTEF--DTFGAVGNALISMYSKSGGVEIAQKIIEQ 338



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 87/210 (41%), Gaps = 33/210 (15%)

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           G+  H  I +  L + V L   L++ Y+K G +  A   F  M  ++V++W  ++ G A 
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 168 NGAGEKSLELFSLMKQA-------------------------------GVRPNEVTFVSV 196
            G  E++  +F  M +                                 V P + T  +V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C  V  +  GR+   S   ++G+  ++     L+++Y ++G    A  V ++M +K 
Sbjct: 152 LASCAAVECLGIGRK-VHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVE 286
              +W  ++++       ++ ++   +++E
Sbjct: 211 -TSSWNTMISSHMQSGLVDLAQVQFEQMIE 239


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/435 (43%), Positives = 284/435 (65%), Gaps = 1/435 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++  V   +A++   A+CG +D A+  FD MP +  ++WNA+++G+A+ G+   ALHL  
Sbjct: 220 YQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLW 279

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ  + +    +  SVLSAC  +GAL+QG+W H ++ ++ LK+   +G  L+DMY+K G
Sbjct: 280 KMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +++ A   F  + + +V +W +++ G A +G G+++L+ F  M + G+ PNE++F+ VL 
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL++EG  +F+ M++ Y +EP + HY   VDL GR G LD A   I +MP++P A
Sbjct: 400 ACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL ACRM+KN E+G  A+ +  EL+  + G  +LLSNIYA +  W  V  VR++M
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMM 518

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K  GVKK P CS +E++  VH F A DETHPR  EI     EIS ++K  GYV +T+ V+
Sbjct: 519 KESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVL 578

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++++E+E+ L  HSEK+A+AF L++   G PIRI KN+RVC DCH   K +SKV +RE
Sbjct: 579 LFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDRE 638

Query: 439 IIVRDRNRFHHFKEG 453
           IIVRD NRFH F++G
Sbjct: 639 IIVRDTNRFHRFRDG 653



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 140/246 (56%), Gaps = 2/246 (0%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +V Q  +++  AKCG +D AR+MFDEMP +D + W A++AG++Q  + R+AL LF  M  
Sbjct: 123 LVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLR 182

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
              + N  ++ S+L A      LD G   H +  +   + +V +G+ALVDMY++CG+M+ 
Sbjct: 183 LGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDA 242

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F GM  ++  +W ++I G A  G GE +L L   M++   +P   T+ SVL  C  
Sbjct: 243 AQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACAS 302

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
           +G +E+G+     M +  G++        L+D+Y +AG +D+A  V +++ +KP   +W 
Sbjct: 303 IGALEQGKWVHAHMIKS-GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWN 360

Query: 263 ALLNAC 268
            +L  C
Sbjct: 361 TMLTGC 366



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 6/198 (3%)

Query: 95  VLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           +L  CT LG ++QGR  H + ++ + L   + L   +V+MY+KCG ++ A   F  M  +
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           ++ TWT++I G + N     +L LF  M + G +PN  T  S+L+       ++ G +  
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQ-L 211

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            +   +YG +  +     LVD+Y R G +D A    + MP K    +W AL++    +  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV-SWNALISG---HAR 267

Query: 274 TEMGELASRKLVELETKN 291
              GE A   L +++ KN
Sbjct: 268 KGEGEHALHLLWKMQRKN 285



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 39/185 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   ++VFD + +PDVV    M++ C                           
Sbjct: 334 MYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGC--------------------------- 366

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
               AQ G  +E L  F  M    ++ NE+S + VL+AC+H G LD+G +    +++ ++
Sbjct: 367 ----AQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKV 422

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG-------AGE 172
           +  V      VD+  + G +++A  F   M  E     W +++G   M+        A E
Sbjct: 423 EPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAE 482

Query: 173 KSLEL 177
           ++ EL
Sbjct: 483 RAFEL 487


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/502 (41%), Positives = 300/502 (59%), Gaps = 46/502 (9%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCG----------------------- 37
           MY +   L   Q+V D I   DVV   +M+S  A+ G                       
Sbjct: 164 MYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCT 223

Query: 38  --------------DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
                         +V   ++MF ++ ++  I+WN M+A Y      +EA+ L+  M+ +
Sbjct: 224 MASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEAN 283

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            V+ + VS+VSVL A   L AL  GR  H + ER +L   + L  AL+DMY+KCG +  A
Sbjct: 284 GVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDA 343

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M+ R+V +WTS+I      G G  ++ +F+ M+ +G+ P+ + FVSVL  C   
Sbjct: 344 RAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHA 403

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GL+++GR +F+ M  E GI P LEH+ C+VDL GRAG++DEA   I +MP++P    WG 
Sbjct: 404 GLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGP 462

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL+ACR+Y N  +G LA+ KL+ L  ++ G YVLLSNIYA++  W  V  +R IM+ KG+
Sbjct: 463 LLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGI 522

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANTNPVMY 379
           KKLPG S +E++  VH F AGD +HP+    Y E++V++G    ++K  GY+  T+  ++
Sbjct: 523 KKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVG----KMKELGYMPETDSALH 578

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEE+KE  L  HSEK+A+AF +I+ K G PIR+ KNLRVC DCH   K+ISK+  REI
Sbjct: 579 DVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREI 638

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD +RFHHF+EG CSC  YW
Sbjct: 639 IIRDTHRFHHFQEGCCSCGDYW 660



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 113/241 (46%), Gaps = 35/241 (14%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +I+   KC  +  A+++ DE+P RD ++WN+M++ YAQ G+  +AL L   M+  ++K
Sbjct: 159 NGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLK 218

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N+ +M S+L A T+                                 +   N+    + 
Sbjct: 219 PNDCTMASLLPAVTN---------------------------------TTSDNVLYVKEM 245

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + +++V +W  +I     N   ++++ L+S M+  GV P+ V+ VSVL     +  +
Sbjct: 246 FLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSAL 305

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             GR       R+  + P L     L+D+Y + G L +A  V N+M  +    +W ++++
Sbjct: 306 SLGRRVHKFAERK-KLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFR-DVVSWTSIIS 363

Query: 267 A 267
           A
Sbjct: 364 A 364



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           A CG+  LAR +FDE+ +++ + +N M+  Y      ++AL ++  M       +  +  
Sbjct: 65  AACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYP 124

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            VL A +   +L  G   H  + +  L + + +G  L+ MY KC ++ +A      +  R
Sbjct: 125 CVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCR 184

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           +V +W S++   A NG    +LEL   M+   ++PN+ T  S+L
Sbjct: 185 DVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLL 228



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L+   ++G  L+ +Y+ CG    A   F  + ++NV  +  +I     N   + +L ++ 
Sbjct: 50  LRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYK 109

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G  P+  T+  VL+       +  G +   ++ +  G++  L     L+ +YG+ 
Sbjct: 110 TMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLK-IGLDLNLYVGNGLIAMYGKC 168

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLN 266
             L EA  V++++P +    +W ++++
Sbjct: 169 KSLKEAQQVLDEIPCR-DVVSWNSMVS 194


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/461 (42%), Positives = 285/461 (61%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G +   ++ F+ +    V+   AMI    + G++  AR++FD M +RD   W  M+
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMI 303

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y + G   EAL LF  MQ   V+ +  S++S+LS C  L +L  GR  H ++ R +  
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFD 363

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V + + L+ MY KCG + KA   F     +++  W S+I G A +G GE++L++F  M
Sbjct: 364 DDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEM 423

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             +G  PN+VT +++L  C   G +EEG E F+SM  ++ + P +EHY C VD+ GRAG+
Sbjct: 424 PSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQ 483

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           +D+A+++I  M +KP A  WGALL AC+ +   ++ E+A++KL E E  N G YVLLS+I
Sbjct: 484 VDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSI 543

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF-AGDETHPRYNEIEVMLGE 360
            A    W  V  VR+ M+   V K PGCS IEV ++VH F   G + HP    I +ML +
Sbjct: 544 NASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEK 603

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
               L+ AGY  + + V++D++EEEK D+L +HSE++A+A+GL+ L EGVPIR++KNLRV
Sbjct: 604 TDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRV 663

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+ISKV  REII+RD NRFHHF  G+CSC+ YW
Sbjct: 664 CGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 15/285 (5%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G +   +K++D +   DVV  T MI    + G VD AR +FDEM ER+ + W  M+ GY 
Sbjct: 155 GRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYR 214

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q  +   A  LF +M     +  EVS  S+L   T  G ++    A  + E   +K  + 
Sbjct: 215 QNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRIED---AEEFFEVMPMKPVIA 267

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
               +V  + + G ++KA   F  M++R+  TW  +I      G   ++L+LF+ M++ G
Sbjct: 268 CNAMIVG-FGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQG 326

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           VRP+  + +S+L  C  +  ++ GR+ H   +R ++  + ++     L+ +Y + G L +
Sbjct: 327 VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVA--SVLMTMYVKCGELVK 384

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
           A  V ++   K     W ++++    Y +  +GE A +   E+ +
Sbjct: 385 AKLVFDRFSSKDII-MWNSIISG---YASHGLGEEALKIFHEMPS 425



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 18/266 (6%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G     +++FD + E +VV    ++S   K   +  AR +F+ MPER+ ++W AM+
Sbjct: 58  YFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMV 117

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GY Q G   EA  LF  M     + NEVS   +       G +D+ R  +  +      
Sbjct: 118 KGYMQEGMVGEAESLFWRMP----ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK--- 170

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V   T ++    + G +++A   F  M+ERNV TWT++I G   N   + + +LF +M
Sbjct: 171 -DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM 229

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
            +      EV++ S+L G  + G +E+  E F+ M     ++P +     +V  +G  G 
Sbjct: 230 PE----KTEVSWTSMLLGYTLSGRIEDAEEFFEVM----PMKPVIACNAMIVG-FGEVGE 280

Query: 242 LDEALDVINKMPMKPHAGAWGALLNA 267
           + +A  V + M  + +A  W  ++ A
Sbjct: 281 ISKARRVFDLMEDRDNA-TWRGMIKA 305



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 116/263 (44%), Gaps = 49/263 (18%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           + +G +   +K FD +    +    +++S     G    AR++FDEM ER+ ++WN +++
Sbjct: 28  SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           GY +     EA ++F LM                                   ERN    
Sbjct: 88  GYIKNRMIVEARNVFELMP----------------------------------ERN---- 109

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
            V   TA+V  Y + G + +A   FW M ERN  +WT + GGL  +G  +K+ +L+ +M 
Sbjct: 110 -VVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMP 168

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
              V    V   +++ G C  G V+E R  FD M RE  +  W      ++  Y +  R+
Sbjct: 169 VKDV----VASTNMIGGLCREGRVDEARLIFDEM-RERNVVTWT----TMITGYRQNNRV 219

Query: 243 DEALDVINKMPMKPHAGAWGALL 265
           D A  +   MP K    +W ++L
Sbjct: 220 DVARKLFEVMPEKTEV-SWTSML 241



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L   + VFD     D++   ++IS  A  G  + A K+F EMP    +     
Sbjct: 375 MYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMP---- 430

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
                                      N+V+++++L+AC++ G L++G      +E    
Sbjct: 431 ---------------------------NKVTLIAILTACSYAGKLEEGLEIFESMESKFC 463

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           +  TV   +  VDM  + G ++KAM+    M  + +   W +++G 
Sbjct: 464 VTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGA 509


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/440 (42%), Positives = 276/440 (62%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+   + ++    KCG+++ AR++F E+P  D +AW  M++G  + G+   AL  +H M+
Sbjct: 1172 DLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMR 1231

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  V+ +E +  +++ AC+ L AL+QGR  H  I +        + T+LVDMY+KCGN+ 
Sbjct: 1232 LSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIE 1291

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F     R + +W ++I GLA +G  +++L+ F  MK  GV P+ VTF+ VL  C 
Sbjct: 1292 DARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACS 1351

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GLV E  E+F SM++ YGIEP +EHY CLVD   RAGR++EA  VI+ MP +  A  +
Sbjct: 1352 HSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMY 1411

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
              LLNACR+  + E G+  + KL+ LE  +  AYVLLSN+YA +  W+ V + R +M+  
Sbjct: 1412 RTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKV 1471

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
             VKK PG S +++  +VH F AGD +H   + I   +  I +R++  GYV +T+  + D+
Sbjct: 1472 NVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDV 1531

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EEE+KE +L  HSEK+AIA+GL+       +R++KNLRVC DCH   K ISKVF REI++
Sbjct: 1532 EEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVL 1591

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD NRFHHF+ G CSC  YW
Sbjct: 1592 RDANRFHHFRNGICSCGDYW 1611



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 131/255 (51%), Gaps = 4/255 (1%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D    TA+I   +K G ++ A  +F      D  +WNA++ GY   G   +AL L+ LMQ
Sbjct: 1071 DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQ 1130

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                + +++++V+   A   L  L QG+  H  + +    + + + + ++DMY KCG M 
Sbjct: 1131 ESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEME 1190

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  +   +   WT++I G   NG  E +L  +  M+ + V+P+E TF ++++ C 
Sbjct: 1191 SARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250

Query: 202  VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            ++  +E+GR+ H + ++     +P++     LVD+Y + G +++A  +  +   +  A +
Sbjct: 1251 LLTALEQGRQIHANIVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTRRIA-S 1307

Query: 261  WGALLNACRMYKNTE 275
            W A++     + N +
Sbjct: 1308 WNAMIVGLAQHGNAK 1322



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 3/189 (1%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYA-QCGK 69
           ++    H PD      +I+  AKCG +  ARK+FD  P+  RD + WNA+L+  A    K
Sbjct: 681 RILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADK 740

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           S +  HLF L++   V     ++  V   C    +       H Y  +  L+  V +  A
Sbjct: 741 SHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGA 800

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV++Y+K G + +A   F GM  R+V  W  ++          +++ LFS   + G RP+
Sbjct: 801 LVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPD 860

Query: 190 EVTFVSVLR 198
           +VT  ++ R
Sbjct: 861 DVTLRTLSR 869



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 15/240 (6%)

Query: 17   GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER---------DPIAWNAMLAGYAQC 67
            G    DV  +T  +S   KC    L  K F     +         D I WN  L+ + Q 
Sbjct: 856  GFRPDDVTLRT--LSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQR 913

Query: 68   GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
            G++ EA+  F  M    V  + ++ V +L+    L  L+ G+  H  + R+ L   V++G
Sbjct: 914  GEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVG 973

Query: 128  TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
              L++MY K G++++A   F  M E ++ +W ++I G  ++G  E S+ +F  + +  + 
Sbjct: 974  NCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLL 1033

Query: 188  PNEVTFVSVLRGCCVV--GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            P++ T  SVLR C  +  G     + H  +M+    ++ ++     L+D+Y + G+++EA
Sbjct: 1034 PDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVS--TALIDVYSKRGKMEEA 1091


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/443 (43%), Positives = 283/443 (63%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  +V  TA++   +KCG +  A  +F  M +++ I W AML G +Q G + +AL LF  
Sbjct: 379 ESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQ 438

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   V  N V++VS++  C HLG+L +GR  H +  R+       + +AL+DMY+KCG 
Sbjct: 439 MQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGK 498

Query: 140 MNKAMDFFWG-MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++ A   F      ++V    S+I G  M+G G  +L ++S M +  ++PN+ TFVS+L 
Sbjct: 499 IHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLT 558

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVEEG+  F SM R++ + P  +HY CLVDL+ RAGRL+EA +++ +MP +P  
Sbjct: 559 ACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPST 618

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
               ALL+ CR +KNT MG   + +L+ L+  N G YV+LSNIYAE++ W+ V  +R +M
Sbjct: 619 DVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLM 678

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G+KK+PG S+IEV  +V+ FFA D++HP + +I  +L  +   ++  GY+ +T+ V+
Sbjct: 679 RMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVL 738

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+ E  K   L  HSE++AIAFGL+S   G  I+I KNLRVC DCH+VTK ISK+  RE
Sbjct: 739 RDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQRE 798

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHF  GKCSC  +W
Sbjct: 799 IIVRDANRFHHFVNGKCSCNDFW 821



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 125/231 (54%), Gaps = 3/231 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T+++   +  GD   A  +FD M  R  I+WNAM++GY Q G   E+  LF  + 
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 +  ++VS++  C+    L+ GR  H  I R  L+  + L TA+VDMYSKCG + 
Sbjct: 340 QSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIK 399

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  M ++NV TWT+++ GL+ NG  E +L+LF  M++  V  N VT VS++  C 
Sbjct: 400 QATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCA 459

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            +G + +GR  H   +R  Y  +  +     L+D+Y + G++  A  + N 
Sbjct: 460 HLGSLTKGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNN 508



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 127/240 (52%), Gaps = 4/240 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           ++M++   K G +  A+K+FD MPE+D + WN+++ GY Q G   E++ +F  M    ++
Sbjct: 184 SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLR 243

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            + V+M ++L AC   G    G  AH Y+    +   V + T+LVDMYS  G+   A   
Sbjct: 244 PSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALV 303

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  R++ +W ++I G   NG   +S  LF  + Q+G   +  T VS++RGC     +
Sbjct: 304 FDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDL 363

Query: 207 EEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           E GR  H   +R+E  +E  L     +VD+Y + G + +A  V  +M  K +   W A+L
Sbjct: 364 ENGRILHSCIIRKE--LESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTAML 420



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 4/240 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I   +  G +  AR +FD+    +    NAM+AG+ +  +  E   LF +M   D+++N
Sbjct: 85  LIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEIN 144

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             + +  L ACT L   + G        R    + + +G+++V+   K G +  A   F 
Sbjct: 145 SYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFD 204

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           GM E++V  W S+IGG    G   +S+++F  M   G+RP+ VT  ++L+ C   GL + 
Sbjct: 205 GMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKV 264

Query: 209 GR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G   H   +    G + ++     LVD+Y   G    A  V + M  +    +W A+++ 
Sbjct: 265 GMCAHSYVLALGMGNDVFV--LTSLVDMYSNLGDTGSAALVFDSMCSRSLI-SWNAMISG 321


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 293/462 (63%), Gaps = 2/462 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +++F+ +    V+   AMIS   + G++  AR++FD M ER+  +W  ++
Sbjct: 244 YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVI 303

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             + + G   EAL LF LMQ   V+    +++S+LS C  L +L  G+  H  + R +  
Sbjct: 304 KIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFD 363

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + V + + L+ MY KCG + K+   F     +++  W S+I G A +G GE++L++F  M
Sbjct: 364 VDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEM 423

Query: 182 KQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
             +G  +PNEVTFV+ L  C   G+VEEG + ++SM   +G++P   HY C+VD+ GRAG
Sbjct: 424 PLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAG 483

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           R +EA+++I+ M ++P A  WG+LL ACR +   ++ E  ++KL+E+E +N G Y+LLSN
Sbjct: 484 RFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSN 543

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF-AGDETHPRYNEIEVMLG 359
           +YA    W  V  +R++MK + V+K PGCS  EV+ +VH F   G  +HP    I  +L 
Sbjct: 544 MYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILD 603

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   L+ AGY  + +  ++D++EEEK ++L  HSE++A+A+ L+ L EG+PIR++KNLR
Sbjct: 604 ELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLR 663

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH   K+ISKV  REII+RD NRFHHF+ G+CSCK YW
Sbjct: 664 VCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 156/341 (45%), Gaps = 61/341 (17%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   +KVFD + E +VV  TA++      G VD+A  +F +MPE++ ++W  ML
Sbjct: 89  YMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVML 148

Query: 62  AGYAQCGKSREALHLFHLM----------QIHDV--------------KLNEVSMVSVLS 97
            G+ Q G+  +A  L+ ++           IH +              +++E S+++  +
Sbjct: 149 IGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTT 208

Query: 98  ACTHLGA---LDQGR-------------WAHV---YIERNRLK-----------MTVTLG 127
             T  G    +D  R             W  +   Y++  R++             V   
Sbjct: 209 MVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC 268

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            A++    + G + KA   F  MKERN  +W +VI     NG   ++L+LF LM++ GVR
Sbjct: 269 NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVR 328

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P   T +S+L  C  +  +  G++ H   +R ++ ++ ++     L+ +Y + G L ++ 
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA--SVLMTMYIKCGELVKSK 386

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
            + ++ P K     W ++++    Y +  +GE A +   E+
Sbjct: 387 LIFDRFPSK-DIIMWNSIISG---YASHGLGEEALKVFCEM 423



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 20/237 (8%)

Query: 30  ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
           I+  ++ G +  ARK+FD    +   +WN+M+AGY      R+A  LF  M   ++    
Sbjct: 24  ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI---- 79

Query: 90  VSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           +S   ++S     G +D+ R    +  ERN     V   TALV  Y   G ++ A   FW
Sbjct: 80  ISWNGLVSGYMKNGEIDEARKVFDLMPERN-----VVSWTALVKGYVHNGKVDVAESLFW 134

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M E+N  +WT ++ G   +G  + + +L+ ++       + +   S++ G C  G V+E
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDE 190

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            RE FD M  E  +  W      +V  YG+  R+D+A  + + MP K    +W ++L
Sbjct: 191 AREIFDEM-SERSVITWT----TMVTGYGQNNRVDDARKIFDVMPEKTEV-SWTSML 241



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 129/255 (50%), Gaps = 20/255 (7%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +K+FD + + +++    ++S   K G++D ARK+FD MPER+ ++W A++ GY   GK  
Sbjct: 68  RKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVD 127

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTAL 130
            A  LF  M     + N+VS   +L      G +D   +   +  +++ +       T++
Sbjct: 128 VAESLFWKMP----EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIAR-----TSM 178

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           +    K G +++A + F  M ER+V TWT+++ G   N   + + ++F +M +      E
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TE 234

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           V++ S+L G    G +E+  E F+ M     ++P +     ++   G+ G + +A  V +
Sbjct: 235 VSWTSMLMGYVQNGRIEDAEELFEVM----PVKPVIA-CNAMISGLGQKGEIAKARRVFD 289

Query: 251 KMPMKPHAGAWGALL 265
            M  +  A +W  ++
Sbjct: 290 SMKERNDA-SWQTVI 303


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/442 (44%), Positives = 282/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    A+I   AKCG V  AR++FD++  RD + WN+MLA Y+Q G     L L   
Sbjct: 208 EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSE 267

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  ++  E ++V+ +SA     AL QGR  H    R   +    + TALVDMY+KCG+
Sbjct: 268 MVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGS 327

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A + F  +  + V +W ++I G AM+G   ++L+LF  M +   +P+ +TFV VL  
Sbjct: 328 VRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSA 386

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+EEG   F++M R+Y I+P ++HY C+VDL G +GRLDEA ++I +M + P +G
Sbjct: 387 CSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSG 446

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALLN+C+++ N E+GE+A  +L+ELE  + G YV+LSNIYA++  W+ V  +R++M 
Sbjct: 447 VWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMT 506

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            + +KK   CS IEV  +VH F +GD +HP  +EI   L  +   +K AGY  +T  V +
Sbjct: 507 DRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFH 566

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E++EK + +C HSE++AIAFGLIS   G  + I KNLR+C DCH   K ISK+  REI
Sbjct: 567 DVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREI 626

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            VRD NR+HHFK+G CSC  YW
Sbjct: 627 TVRDVNRYHHFKDGVCSCGDYW 648



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 126/251 (50%), Gaps = 4/251 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V  T +++    C  +  AR +FD +P+ +   WN ++ GYA  G    A+ L++ M 
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF 168

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            + +  +  +   VL AC  L A++ GR  H ++ +   +  V +G AL+DMY+KCG + 
Sbjct: 169 DYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVG 228

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  +  R+   W S++   + NG  +  L L S M   G+RP E T V+ +    
Sbjct: 229 SAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASA 288

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
               + +GRE H  S R+E+  E   +    LVD+Y + G +  A ++  ++ +K    +
Sbjct: 289 DNAALPQGRELHGLSWRQEF--ESHDKVKTALVDMYAKCGSVRVARNLFERLGVK-RVVS 345

Query: 261 WGALLNACRMY 271
           W A++    M+
Sbjct: 346 WNAMITGYAMH 356



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 2/174 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L +C    A+  G+  H  +          + T LV++Y  C +++ A   F  + + 
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           N++ W  +I G A NG  E +++L+  M   G+ P+  TF  VL+ C  +  +E GRE  
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           + + +  G E  +     L+D+Y + G +  A +V +K+ ++  A  W ++L A
Sbjct: 200 EHVVQT-GWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVLWNSMLAA 251


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/443 (42%), Positives = 280/443 (63%), Gaps = 1/443 (0%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFH 78
            E D   + A+I   AKCG +  A  +F++    +D + WN ++A Y Q G ++EA+  FH
Sbjct: 563  ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFH 622

Query: 79   LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
             M++ +   N V+ VSVL A  +L A  +G   H  I +        +G +L+DMY+KCG
Sbjct: 623  QMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG 682

Query: 139  NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
             ++ +   F  M  ++  +W +++ G A++G G++++ LFSLM+++ V+ + V+FVSVL 
Sbjct: 683  QLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742

Query: 199  GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             C   GLVEEGR+ F SM  +Y I+P LEHY C+VDL GRAG  DE L  I  MP++P A
Sbjct: 743  ACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 802

Query: 259  GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            G WGALL +CRM+ N ++GE+A   LV+LE +N   +V+LS+IYA+S  W      R  M
Sbjct: 803  GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKM 862

Query: 319  KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
               G+KK PGCS +E+  +VH F  GD++HP+   + ++   +  +++  GYV + + V+
Sbjct: 863  NDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVL 922

Query: 379  YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++EEE+KE  L  HSE++AI F L++   G  I+IVKNLRVC DCH  TK ISK+  R 
Sbjct: 923  QNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRR 982

Query: 439  IIVRDRNRFHHFKEGKCSCKGYW 461
            IIVRD  RFHHF++G CSC  YW
Sbjct: 983  IIVRDATRFHHFEDGICSCNDYW 1005



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 136/239 (56%), Gaps = 4/239 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I   +KCGDVD+AR++FD+M ++D ++W  M+AGYA  G   E L LF  M++ +V++N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           +VS VS   A      L++G+  H    + R+   + + T L+ MY+KCG   KA   FW
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           G++ R++  W+++I  L   G  E++L LF  M+   ++PN VT +S+L  C  + L++ 
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKL 448

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           G+  H  +++ +  ++  L     LV +Y + G    AL   N+M  +     W +L+N
Sbjct: 449 GKSIHCFTVKAD--MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIV-TWNSLIN 504



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 1/248 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D++  T ++   AKCG+ + A+++F  +  RD +AW+A++A   Q G   EAL LF  
Sbjct: 361 DSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE 420

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +K N V+++S+L AC  L  L  G+  H +  +  +   ++ GTALV MY+KCG 
Sbjct: 421 MQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGF 480

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
              A+  F  M  R++ TW S+I G A  G    ++++F  ++ + + P+  T V V+  
Sbjct: 481 FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C ++  +++G      +  + G E        L+D+Y + G L  A  + NK        
Sbjct: 541 CALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 260 AWGALLNA 267
            W  ++ A
Sbjct: 600 TWNVIIAA 607



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 40  DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
           DLAR +FD  P    I WN+M+  Y +  +  EAL +++ M    ++ ++ +   VL AC
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
           T    L +G W H  I+R  L+  V +G  LVDMYSK G++ +A + F  M +R+V  W 
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRR 218
           ++I GL+ +    ++++ F  M+  GV P+ V+ +++  G C +  +E  R  H    RR
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR 259

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++           L+DLY + G +D A  V ++M  +    +WG ++
Sbjct: 260 DFSSAV----SNGLIDLYSKCGDVDVARRVFDQMVDQDDV-SWGTMM 301



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 108/192 (56%), Gaps = 2/192 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     ++   +K GD+  AR++FD+MP+RD +AWNAM+AG +Q     EA+  F  
Sbjct: 161 ERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRS 220

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ+  V+ + VS++++      L  ++  R  H Y+ R      V+ G  L+D+YSKCG+
Sbjct: 221 MQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGD 278

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  M +++  +W +++ G A NG   + LELF  MK   VR N+V+ VS    
Sbjct: 279 VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338

Query: 200 CCVVGLVEEGRE 211
                 +E+G+E
Sbjct: 339 AAETIDLEKGKE 350



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 36/181 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L Y +K+F+ +   D V   AM+S                             
Sbjct: 677 MYAKCGQLDYSEKLFNEMDHKDTVSWNAMLS----------------------------- 707

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNR 119
             GYA  G    A+ LF LMQ   V+++ VS VSVLSAC H G +++GR   H   ++  
Sbjct: 708 --GYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 765

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG---AGEKSL 175
           +K  +     +VD+  + G  ++ + F   M  E +   W +++G   M+     GE +L
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 176 E 176
           +
Sbjct: 826 D 826


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/442 (46%), Positives = 294/442 (66%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   QTA++   +KCG + +ARK+FD + +R  +AWNAM++GY Q G +  A+ ++  MQ
Sbjct: 143 DRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQ 202

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  V  +  + V+ LSAC   GALD GR     I  +++ ++V LG+ALV+MY++CG ++
Sbjct: 203 VAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVS 262

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA D+F  ++ERNV TWTS+I G  M+G G ++++LF LM+  G  PN+VTFV+VL  C 
Sbjct: 263 KARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACA 322

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGA 260
             GLV EGR  FDSM+R YG+ P  EHY  +VD+YGRAG LD+A+  I + +P +P    
Sbjct: 323 HAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEV 382

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W A+L AC+M+KN  +G   + +L+ LE +N    VLLSNIYA S   + V  VR +M  
Sbjct: 383 WTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIK 442

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + +KK  G S+IE+    H F  G+++H +  EI   L E+  R+  AGYV  T+ V+++
Sbjct: 443 RRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHRISDAGYVPETDSVLHE 502

Query: 381 IEEEEKEDTLCKHSEKVAIAFGL-ISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           +EEEE+E  L  HSEK+A+A+GL +S     PIR++KNLR+C DCH   K +S V +REI
Sbjct: 503 LEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGDCHLAIKFMSSVESREI 562

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD++RFHHFK+GKCSC  YW
Sbjct: 563 IVRDKHRFHHFKDGKCSCLEYW 584



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 73/241 (30%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMI------------------------------ 30
           +Y++ G L   +K+FD I +  VV   AMI                              
Sbjct: 153 LYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSAT 212

Query: 31  -----SACAKCGDVDLARKM-----------------------------------FDEMP 50
                SACA+ G +DL R++                                   FD + 
Sbjct: 213 FVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQ 272

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           ER+ + W +M+AGY   G   EA+ LFHLM++     N+V+ V+VL+AC H G +++GR 
Sbjct: 273 ERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGLVNEGRS 332

Query: 111 AHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
           A   ++R   L        ++VDMY + G ++ AM F       E     WT+++G   M
Sbjct: 333 AFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAMLGACKM 392

Query: 168 N 168
           +
Sbjct: 393 H 393



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 50  PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P  D    +++    A  G   EA+  +  +    +  +  +  +   AC  L AL  G 
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGM 129

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
             H +           + TALV +YSKCG +  A   F  +++R+V  W ++I G   NG
Sbjct: 130 AVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNG 189

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEH 228
             E+++E++  M+ A V P+  TFV+ L  C   G ++ GRE     +  +  +  +L  
Sbjct: 190 LAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLG- 248

Query: 229 YGCLVDLYGRAGRLDEALDVINKM 252
              LV++Y R G + +A D  +++
Sbjct: 249 -SALVNMYARCGLVSKARDWFDRL 271


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/454 (43%), Positives = 283/454 (62%), Gaps = 9/454 (1%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G+C K   G+ + D      +++   K G++D  RK+FDEMP +  I WNAM+ GYAQ G
Sbjct: 137 GFCVKF--GL-DMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNG 193

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            +   L L+  M+      + +++V VLS+C HLGAL  G+     +E         L  
Sbjct: 194 LANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNN 253

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           ALV+MY++CGN+ KA D F GM  ++V +WT++IGG  M+G GE ++ LF  M + G++P
Sbjct: 254 ALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKP 313

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           +   FVSVL  C   GL  +G ++F  M R+YG+ P  EHY C+VDL GRAGRL+EA ++
Sbjct: 314 DGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEAREL 373

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I  M ++     WGALL AC++++N E+ ELA  +++ELE  N G YVLLSN+Y E+ N 
Sbjct: 374 IESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNL 433

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK-L 367
           + ++ VR +M+ + +KK PGCS +E    VH FFAGD  HP+ NEI   L E+   +K L
Sbjct: 434 EGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDL 493

Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDV 427
            G   N +        EE  +++  HSEK+A+AF L++ ++   I I+KNLR+C DCH  
Sbjct: 494 DGCKKNDHE-----RREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLF 548

Query: 428 TKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            K++SK+ +R+ +VRD  RFHHFK G CSCK YW
Sbjct: 549 IKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 137/260 (52%), Gaps = 8/260 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLF 77
           EP V  QT++IS   KC  +D ARK+FDE P+  +  + +N++L+GYA   + ++ + LF
Sbjct: 44  EPFV--QTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLF 101

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M+   V++N V+M+ ++  C   G L  G   H +  +  L M  ++G  L+ MY K 
Sbjct: 102 CEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKS 161

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G ++     F  M  + + TW ++I G A NG     LEL+  M+  G  P+ +T V VL
Sbjct: 162 GEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVL 221

Query: 198 RGCCVVGLVEEGREHFDSMRR-EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +G +  G+E    M    +   P+L +   LV++Y R G L +A D+ + MP+K 
Sbjct: 222 SSCAHLGALSVGKEVERKMEGFGFSSNPFLNN--ALVNMYARCGNLKKARDIFDGMPVKS 279

Query: 257 HAGAWGALLNACRMYKNTEM 276
              +W A++    M+   E+
Sbjct: 280 VV-SWTAIIGGYGMHGQGEV 298



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  +    + +C  L     G+  H ++ +    +   + T+L+ MY KC  ++ A   F
Sbjct: 9   NAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLF 68

Query: 148 WGMKERNVYT--WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
               +    T  + S++ G A+N   +  + LF  M++ GV  N VT + +++ C + G 
Sbjct: 69  DENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGN 128

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +  G         ++G++       CL+ +Y ++G +D    + ++MP K     W A++
Sbjct: 129 LGLGM-CVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI-TWNAMI 186

Query: 266 NA 267
           N 
Sbjct: 187 NG 188



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 33/165 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L   + +FDG+    VV  TA+I      G  ++A  +FDEM           
Sbjct: 258 MYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIR--------- 308

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
                                   +K +  + VSVLSAC+H G  ++G      +ER   
Sbjct: 309 ----------------------GGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYG 346

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIG 163
           L+      + +VD+  + G +N+A +    M+ R +   W +++G
Sbjct: 347 LRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLG 391


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 283/438 (64%), Gaps = 2/438 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +T ++    K G++  A  +F  M ERD +AWNA++A   Q G S +AL  F  M +  +
Sbjct: 173 RTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGI 232

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           K + V++VS LSAC HLG L+ G   + +     +   + +  A +DM +KCG+M+KAM+
Sbjct: 233 KPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMN 292

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M +RNV +W++VIGG A+NG  EK+L LFS MK  GV+PN VTF++VL  C   G 
Sbjct: 293 LFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGR 352

Query: 206 VEEGREHFDSMRR--EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           V EG ++F+ M +  +  I+P  EHY C+VDL GR+G L+EA + I  MP++   G WGA
Sbjct: 353 VNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGA 412

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL AC +++N ++G+  +  L EL  +    +VLLSN+YA +  W  V  VRQ MK KG 
Sbjct: 413 LLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGA 472

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           +K+   S +E + E+H  + GD++HP+   I   L ++ +++K  GY+  T+ V +D+E+
Sbjct: 473 RKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVED 532

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           EEKE TL  HSEK+AIAF LI+     PIR++KNLR+C DCH   K++S++  REII+RD
Sbjct: 533 EEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRD 592

Query: 444 RNRFHHFKEGKCSCKGYW 461
           +NRFHHFK G CSCK +W
Sbjct: 593 KNRFHHFKNGICSCKDFW 610



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           GD+  AR++FDEM +  P  WN ++ GY + G   +A+ ++  M+   V+ +  +   V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            AC  L  L  G   H ++ ++ L+    + T L+ MY K G +  A   F  M ER++ 
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
            W ++I      G   K+L+ F  M  AG++P+ VT VS L  C  +G +E G E ++  
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYE-F 261

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            RE GI+  +  +   +D+  + G +D+A+++ ++MP +
Sbjct: 262 AREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQR 300



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 24/142 (16%)

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+M+ A   F  M +   + W +++ G   NG  +K++ ++  M+  GVRP+  TF  V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 198 RGCCVVG-----------LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           + C  +            +V+ G E   ++R E            L+ +Y + G L  A 
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTE------------LMIMYVKFGELGCAE 190

Query: 247 DVINKMPMKPHAGAWGALLNAC 268
            +   M ++    AW AL+  C
Sbjct: 191 FLFGSM-VERDLVAWNALIAVC 211


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/461 (41%), Positives = 289/461 (62%), Gaps = 1/461 (0%)

Query: 1    MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            MYA+ G +     VF  I   D V   ++IS  ++   +D AR +F++MP+RD ++W A+
Sbjct: 599  MYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAI 658

Query: 61   LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
            ++ Y Q G    AL LF  M    +K N++++ S+LSAC +LGA+  G   H  I +   
Sbjct: 659  ISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGF 718

Query: 121  KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
               + +G +L+ MY KCG        F  M E ++ TW +V+ G A NG G++++++F  
Sbjct: 719  DTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQ 777

Query: 181  MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
            M+  G+ P++++F+ VL  C   GLV+EG  HF+SM ++YGI P + HY C+VDL GRAG
Sbjct: 778  MEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAG 837

Query: 241  RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
             L EA  +I  MP+KP +  W ALL ACR+++N E+G+  + +L ++       YVLLSN
Sbjct: 838  YLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSN 897

Query: 301  IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            ++A    WD+V  +R++MK +G+ K PG S I+V  ++H F  GD TH +  EI   L E
Sbjct: 898  LFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKE 957

Query: 361  ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
                 +  GY+ +TN V++D+EEE+K++ L  HSEK+A+ FG++S   G PI+I+KNLR+
Sbjct: 958  YYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRI 1017

Query: 421  CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            C DCH   K +SKV  R+II+RD NRFHHF++G CSC  YW
Sbjct: 1018 CGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 149/296 (50%), Gaps = 43/296 (14%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+ G +   ++VF+ + E +VV   AMIS   + GD+  ARK+FDEMPE++  +WN+++
Sbjct: 243 YAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVV 302

Query: 62  AGYAQCGKSREALHLFHLM----------------QIHD---------------VKLNEV 90
            GY  C +  EA  LF  M                 I D                + ++ 
Sbjct: 303 TGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQS 362

Query: 91  SMVSVLSACTHLGALDQ-GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
             V VLSA T L  L+  G    + I +   +  V +G+A+++ Y++ G+++ AM FF  
Sbjct: 363 IFVVVLSAITGLDDLELIGSLRPIAI-KTGYEGDVVVGSAILNAYTRNGSLDLAMHFFET 421

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M ERN Y+WT++I   A  G  + +++L+  + +  V     T  +++     VG +++ 
Sbjct: 422 MPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKA 477

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           R  FD +     + P +  +  ++  Y + G L EA D+  KMP+K ++ +W A++
Sbjct: 478 RLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMI 527



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 150/329 (45%), Gaps = 65/329 (19%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           +A+ G L    ++++ + E  V  +TAM++A A+ G +  AR +FDE+   + +AWNA++
Sbjct: 437 FAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAII 496

Query: 62  AGYAQCGKSREALHLFHLMQIHD------------------------VKL-------NEV 90
           AGY Q G  +EA  LF  M + +                        ++L       ++ 
Sbjct: 497 AGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDS 556

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN----------- 139
           S  S LSAC ++G ++ GR  H    +   +    +   L+ MY+KCGN           
Sbjct: 557 SFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTI 616

Query: 140 --------------------MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                               ++ A   F  M +R+V +WT++I      G GE +L+LF 
Sbjct: 617 RVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFL 676

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G++PN++T  S+L  C  +G ++ G E F ++  + G + +L     L+ +Y + 
Sbjct: 677 DMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHALIFKLGFDTFLFVGNSLITMYFKC 735

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G  ++   V  +MP +     W A+L  C
Sbjct: 736 G-YEDGFCVFEEMP-EHDLITWNAVLVGC 762



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 23/320 (7%)

Query: 4   ELGCLGYCQ---KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ELG LG  +   +VF+ + + DVV   +MI+  ++ G VD AR +FD    ++   W  +
Sbjct: 180 ELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTIL 239

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L GYA+ G+  EA  +F  M     + N VS  +++S     G L   R   ++ E    
Sbjct: 240 LTGYAKEGRIEEAREVFESM----TERNVVSWNAMISGYVQNGDLKNAR--KLFDEMP-- 291

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  V    ++V  Y  C  M++A + F  M ERN  +W  +I G        ++ ++F  
Sbjct: 292 EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVK 351

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR---EYGIEPWLEHYGCLVDLYG 237
           M +   RP++  FV VL    + GL  +  E   S+R    + G E  +     +++ Y 
Sbjct: 352 MCRTVARPDQSIFVVVL--SAITGL--DDLELIGSLRPIAIKTGYEGDVVVGSAILNAYT 407

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNAC----RMYKNTEMGELASRKLVELETKNHG 293
           R G LD A+     MP + +  +W  ++ A     R+    ++ E    + V  +T    
Sbjct: 408 RNGSLDLAMHFFETMPER-NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMT 466

Query: 294 AYVLLSNIYAESKNWDRVIN 313
           AY  +  I      +D ++N
Sbjct: 467 AYAQVGRIQKARLIFDEILN 486


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 278/435 (63%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            ++I+   K G +D A ++F+EMP R  ++WN+M+  +   G + + + LF+LM+   + 
Sbjct: 203 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN 262

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            ++ +MV++L ACT  G   Q    H YI R      + + TAL+++Y+K G +N + D 
Sbjct: 263 PDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 322

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +K+R+   WT+++ G A++  G ++++LF LM + GV  + VTF  +L  C   GLV
Sbjct: 323 FEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLV 382

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEG+++F+ M   Y +EP L+HY C+VDL GR+GRL++A ++I  MPM+P +G WGALL 
Sbjct: 383 EEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLG 442

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR+Y N E+G+  + +L+ L+  +H  Y++LSNIY+ +  W     VR +MK + + + 
Sbjct: 443 ACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRN 502

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS IE   ++H F  GD+ HPR +EI   L E+ R+++ AG    T  V++DI+EE K
Sbjct: 503 PGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVK 562

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
            D + KHSEK+AIAFGL+    GVP+ I KNLR+C DCH   K  S +  R II+RD  R
Sbjct: 563 VDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKR 622

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF +G CSC+ YW
Sbjct: 623 FHHFADGLCSCRDYW 637



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 142/263 (53%), Gaps = 7/263 (2%)

Query: 8   LGYCQ----KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           + YC     +V   ++  D      ++S   K G  + A+++FDEMP +D ++WN++++G
Sbjct: 78  VSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSG 137

Query: 64  YAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
            +  G     L+ F  M+    +  NEV+++SV+SAC  +GALD+G+  H  + +  +  
Sbjct: 138 LSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSG 197

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
              +  +L++MY K G ++ A   F  M  R++ +W S++     NG  EK ++LF+LMK
Sbjct: 198 KAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMK 257

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           +AG+ P++ T V++LR C   GL  +  E   +     G    +     L++LY + GRL
Sbjct: 258 RAGINPDQATMVALLRACTDTGLGRQA-ESIHAYIHRCGFNADIIIATALLNLYAKLGRL 316

Query: 243 DEALDVINKMPMKPHAGAWGALL 265
           + + D+  ++  +    AW A+L
Sbjct: 317 NASEDIFEEIKDRDRI-AWTAML 338



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 87/153 (56%), Gaps = 2/153 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  TA+++  AK G ++ +  +F+E+ +RD IAW AMLAGYA     REA+ LF LM 
Sbjct: 299 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMV 358

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              V+++ V+   +LSAC+H G +++G ++  +  E  R++  +   + +VD+  + G +
Sbjct: 359 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 418

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGE 172
             A +    M  E +   W +++G   + G  E
Sbjct: 419 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVE 451


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 280/448 (62%), Gaps = 5/448 (1%)

Query: 15  FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74
           FDG    DV   +++I   AKC  ++ + + F  +P +D I+WN+++AG  Q G+    L
Sbjct: 258 FDG----DVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGL 313

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
             F  M   +VK   VS  SV+ AC HL AL  GR  H  I R        + ++LVDMY
Sbjct: 314 GFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMY 373

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           +KCGN+  A   F  + +R++  WT++I G AM+G    ++ LF  M + GVRP  V F+
Sbjct: 374 AKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFM 433

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-P 253
           +VL  C   GLV+EG  +F+SM R++GI P LEHY  + DL GRAGRL+EA D I+ M  
Sbjct: 434 AVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRG 493

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
           ++P    W  LL ACR +K+ E+ E    KL+ ++++N GAYVL+SNIY+ ++ W     
Sbjct: 494 VQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAAR 553

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           +R  M+ KG+KK P CS IEV  +VH F AGD++HP Y++I   L  +  +++  GYV +
Sbjct: 554 LRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVID 613

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           TN V++D++EE K + L  HSE++AIA+G+IS   G  IR++KN+RVC DCH   K I+K
Sbjct: 614 TNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITK 673

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +  REI VRD +RFHHFK G CSC  YW
Sbjct: 674 IVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 3/234 (1%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLS 97
           +D  +K+FD MP RD ++WN ++AG+AQ G   EAL +   M  +  +K +  ++ S+L 
Sbjct: 176 IDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILP 235

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
                  +++G+  H Y  RN     V +G++L+DMY+KC  +  ++  F+ +  ++  +
Sbjct: 236 IFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAIS 295

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           W S+I G   NG  ++ L  F  M +  V+P  V+F SV+  C  +  +  GR+    + 
Sbjct: 296 WNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIV 355

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           R  G +        LVD+Y + G +  A  V +++  K    AW A++  C M+
Sbjct: 356 R-LGFDDNEFIASSLVDMYAKCGNIKMARYVFDRID-KRDMVAWTAIIMGCAMH 407



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 28/234 (11%)

Query: 56  AWNAMLAGYAQCGKSREALHL----FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111
           AW++++    +C  S   LHL    F+ M+   V  N     S+L A T L         
Sbjct: 77  AWSSII----KCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSL 132

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG---------------MKERNVY 156
           H    R  L   + +  AL++ Y+K  N  K  D F                 M  R+V 
Sbjct: 133 HACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVV 192

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGRE-HFD 214
           +W +VI G A NG   ++L++   M + G ++P+  T  S+L        V +G+E H  
Sbjct: 193 SWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGY 252

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           ++R  +  + ++     L+D+Y +  RL+ +L     +P K  A +W +++  C
Sbjct: 253 AVRNGFDGDVFIG--SSLIDMYAKCNRLECSLRAFYILPRKD-AISWNSIIAGC 303



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 34/178 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   + VFD I + D+V  TA+I  CA  G    A  +F+ M E         
Sbjct: 372 MYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLED-------- 423

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-R 119
             G   C                      V+ ++VL+AC+H G +D+G      +ER+  
Sbjct: 424 --GVRPC---------------------YVAFMAVLTACSHAGLVDEGWRYFNSMERDFG 460

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           +   +    A+ D+  + G + +A DF   M  R V    SV   L       KS+EL
Sbjct: 461 IAPGLEHYAAVADLLGRAGRLEEAYDFISNM--RGVQPTGSVWSILLAACRAHKSVEL 516


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/442 (43%), Positives = 281/442 (63%), Gaps = 2/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  ++++I A  K GD+D  R++FDEM  RD + WN+++AG+AQ G    A+ LF  
Sbjct: 200 DSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMR 259

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+      N+ ++ SVL ACT +  L+ GR  H ++ +      + L  AL+DMY KCG+
Sbjct: 260 MKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGS 317

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M +R+V +W++++ GLA NG   ++L +F LMK  GV PN VT V VL  
Sbjct: 318 LEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFA 377

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVE+G  +F SM+R +GI+P  EH+ C+VDL GRAG+LDEA++ I+ M ++P + 
Sbjct: 378 CSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSV 437

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL ACRM+KN  +   A+R++++LE  + GA VLLSN YA+ + W       + M+
Sbjct: 438 IWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMR 497

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G++K PG S IE+++ VH F AGD +HP  + I   L  +  R+K  GYV  T  V+ 
Sbjct: 498 DRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQ 557

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+  E+KED L  HSEK+AI FG +   +G PIRI+KNLR+C DCH   K++SK   R I
Sbjct: 558 DLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVI 617

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RD  RFHHF++G CSC  YW
Sbjct: 618 VIRDPVRFHHFQDGACSCGDYW 639



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLFHLMQ 81
           +    ++ S  AK G +D A +MFD MP R+ + W  ++A  A   G+ +EAL     M+
Sbjct: 104 LFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMR 163

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N  +  SVL ACT  G L      H    +  L   V + ++L+D Y K G+++
Sbjct: 164 RDGVAPNAYTFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLD 220

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  M  R++  W S+I G A +G G  ++ELF  MK AG   N+ T  SVLR C 
Sbjct: 221 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACT 280

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            + ++E GR+ H   ++ +      L  +  L+D+Y + G L++A  + ++MP +
Sbjct: 281 GMVMLEAGRQVHAHVLKYDRD----LILHNALLDMYCKCGSLEDADALFHRMPQR 331



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 6/154 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D++   A++    KCG ++ A  +F  MP+RD I+W+ M++G AQ GKS EAL +F 
Sbjct: 298 YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFD 357

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL---KMTVTLGTALVDMYS 135
           LM+   V  N V+MV VL AC+H G ++ G W H +    RL   +        +VD+  
Sbjct: 358 LMKSQGVAPNHVTMVGVLFACSHAGLVEDG-W-HYFRSMKRLFGIQPEREHHNCMVDLLG 415

Query: 136 KCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           + G +++A++F  GM  E +   W +++G   M+
Sbjct: 416 RAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMH 449



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-----KMTVTLGTALVDMYSKCGNM 140
           + + VS+  ++  C   G  D GR  H ++E +          + +  +L  MY+K G +
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLA-MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + A+  F GM  RNV TWT+V+  LA  +G  +++L     M++ GV PN  TF SVL  
Sbjct: 121 DDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGA 180

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           C   G++     H  +++   G++  +     L+D Y + G LD    V ++M
Sbjct: 181 CTTPGMLTA--VHASTVK--AGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM 229


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/440 (43%), Positives = 279/440 (63%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  TA++   AKCG +  AR++FD MP RD ++W+AM+  Y + G   EA   FHLM+
Sbjct: 394 DLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMK 453

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +++ + V+ +++L+AC HLGALD G   +    +  L   V LG AL+ M +K G++ 
Sbjct: 454 RSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVE 513

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  M  R+V TW ++IGG +++G   ++L LF  M +   RPN VTFV VL  C 
Sbjct: 514 RARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACS 573

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G V+EGR  F  +    GI P ++ YGC+VDL GRAG LDEA  +I  MP+KP +  W
Sbjct: 574 RAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIW 633

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            +LL ACR++ N ++ E A+ + + ++  +   YV LS++YA +  W+ V  VR++M+++
Sbjct: 634 SSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESR 693

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K  GC+ IEV  +VH F   D +HP   EI   L  +   +K  GY+  T  V++D+
Sbjct: 694 GIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDV 753

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            E++KE+ +  HSEK+AIA+G++SL  G PIRI KNLRVC DCH  +K ISKV  REII 
Sbjct: 754 GEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIA 813

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD +RFHHFK+G CSC  YW
Sbjct: 814 RDASRFHHFKDGVCSCGDYW 833



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 142/298 (47%), Gaps = 43/298 (14%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +  G  + ++     +I   + CG+V  AR++FD +  +  + WNA++AGYAQ G  +EA
Sbjct: 83  IIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEA 142

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             LF  M    ++ + ++ +SVL AC+    L+ G+  H  +          +GTALV M
Sbjct: 143 FALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSM 202

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y K G+M+ A   F G+  R+V T+  ++GG A +G  EK+ ELF  M+Q G++PN+++F
Sbjct: 203 YVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISF 262

Query: 194 VSVLRGC-----------------------------------CVVGLVEEGREHFDSMRR 218
           +S+L GC                                      G +E  R  FD+M+ 
Sbjct: 263 LSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKV 322

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNACRMYKN 273
              +  W      +++ Y   G +++A  +   M    ++P    +  ++NAC +  N
Sbjct: 323 R-DVVSWT----VMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISAN 375



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 2/246 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    TA++S   K G +D AR++FD +  RD   +N M+ GYA+ G   +A  LF+ MQ
Sbjct: 192 DFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQ 251

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K N++S +S+L  C    AL  G+  H       L   + + T+L+ MY+ CG++ 
Sbjct: 252 QVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIE 311

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  MK R+V +WT +I G A NG  E +  LF+ M++ G++P+ +T++ ++  C 
Sbjct: 312 GARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA 371

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           +   +   RE   S     G    L     LV +Y + G + +A  V + MP +    +W
Sbjct: 372 ISANLNHARE-IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVV-SW 429

Query: 262 GALLNA 267
            A++ A
Sbjct: 430 SAMIGA 435



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 139/276 (50%), Gaps = 3/276 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   T++I     CG ++ AR++FD M  RD ++W  M+ GYA+ G   +A  LF  MQ
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ + ++ + +++AC     L+  R  H  ++       + + TALV MY+KCG + 
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIK 412

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  R+V +W+++IG    NG G ++ E F LMK++ + P+ VT++++L  C 
Sbjct: 413 DARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACG 472

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G ++ G E +    +   +   +     L+ +  + G ++ A  + + M ++     W
Sbjct: 473 HLGALDVGMEIYTQAIKA-DLVSHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVITW 530

Query: 262 GALLNACRMYKNT-EMGELASRKLVELETKNHGAYV 296
            A++    ++ N  E   L  R L E    N   +V
Sbjct: 531 NAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFV 566



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  + V +   CT L     G+    +I +   ++ +     L+ +YS CGN+ +A   
Sbjct: 55  IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQI 114

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++ + V TW ++I G A  G  +++  LF  M   G+ P+ +TF+SVL  C     +
Sbjct: 115 FDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGL 174

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             G+E   +     G          LV +Y + G +D+A  V + + ++
Sbjct: 175 NWGKE-VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIR 222


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 279/444 (62%), Gaps = 2/444 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV   +++I   AKC  V+L+   F  +  RD I+WN+++AG  Q G+  + L  F  
Sbjct: 231 DKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRR 290

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    VK  +VS  SV+ AC HL AL+ G+  H YI R        + ++L+DMY+KCGN
Sbjct: 291 MLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGN 350

Query: 140 MNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           +  A   F    M +R++ +WT++I G AM+G    ++ LF  M   GV+P  V F++VL
Sbjct: 351 IKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVL 410

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLV+EG ++F+SM+R++G+ P LEHY  + DL GRAGRL+EA D I+ M  +P 
Sbjct: 411 TACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPT 470

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              W  LL ACR +KN E+ E    K++ ++  N GA+V++SNIY+ ++ W     +R  
Sbjct: 471 GSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVR 530

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M+  G+KK P CS IEV  +VH F AGD++HP Y++I   L  +  +++  GYV +TN V
Sbjct: 531 MRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEV 590

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++D++EE K D L  HSE++AIAFG+IS   G  IR++KN+RVC DCH   K ++K+  R
Sbjct: 591 LHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGR 650

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EIIVRD +RFHHFK G CSC  YW
Sbjct: 651 EIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +D  RK+FD MP RD ++WN ++AG AQ G   EAL++   M   +++ +  ++ S+L  
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
            T    + +G+  H Y  R+     V +G++L+DMY+KC  +  ++  F  +  R+  +W
Sbjct: 209 FTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISW 268

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMR 217
            S+I G   NG  ++ L  F  M +  V+P +V+F SV+  C  +  +  G++ H   +R
Sbjct: 269 NSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIR 328

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM-KPHAGAWGALLNACRMY 271
             +    ++     L+D+Y + G +  A  + NK+ M      +W A++  C M+
Sbjct: 329 LGFDDNKFIA--SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 26/259 (10%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           +AW  ++  YA  G  R +L  F+L++   +  +     S+L A T     +  +  H  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 115 IERNRLKMTVTLGTALVDMYSK----------------------CGNMNKAMDFFWGMKE 152
           + R      +    AL++MYSK                         ++     F  M  
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           R+V +W +VI G A NG  E++L +   M +  +RP+  T  S+L        V +G+E 
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEI 221

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           H  ++R  +  + ++     L+D+Y +  +++ ++   + +  +  A +W +++  C   
Sbjct: 222 HGYAIRHGFDKDVFIG--SSLIDMYAKCTQVELSVCAFHLLSNRD-AISWNSIIAGCVQN 278

Query: 272 KNTEMGELASRKLVELETK 290
              + G    R++++ + K
Sbjct: 279 GRFDQGLGFFRRMLKEKVK 297


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/434 (41%), Positives = 277/434 (63%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++I+   K G +D A ++F+EMP R  ++WN+M+  +   G + + + LF+LM+   +  
Sbjct: 281 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 340

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           ++ +MV++L ACT  G   Q    H YI R      + + TAL+++Y+K G +N + D F
Sbjct: 341 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 400

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +K+R+   WT+++ G A++  G ++++LF LM + GV  + VTF  +L  C   GLVE
Sbjct: 401 EEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 460

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG+++F+ M   Y +EP L+HY C+VDL GR+GRL++A ++I  MPM+P +G WGALL A
Sbjct: 461 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 520

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR+Y N E+G+  + +L+ L+  +H  Y++LSNIY+ +  W     VR +MK + + + P
Sbjct: 521 CRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNP 580

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           GCS IE   ++H F  GD+ HPR +EI   L E+ R++  AG    T  V++DI+EE K 
Sbjct: 581 GCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKV 640

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
           D + KHSEK+AIAFGL+    GVP+ I KNLR+C DCH   K  S +  R II+RD  RF
Sbjct: 641 DMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRF 700

Query: 448 HHFKEGKCSCKGYW 461
           HHF +G CSC+ YW
Sbjct: 701 HHFADGLCSCRDYW 714



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 140/260 (53%), Gaps = 3/260 (1%)

Query: 7   CLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ 66
           C     +V   ++  D      ++S   K G  + A+++FDEMP RD ++WN++++G + 
Sbjct: 158 CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSG 217

Query: 67  CGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
            G     L+ F  M+    +  NEV+++SV+SAC  +GALD+G+  H  + +  +     
Sbjct: 218 RGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAK 277

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           +  +L++MY K G ++ A   F  M  R++ +W S++     NG  EK ++LF+LMK+AG
Sbjct: 278 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 337

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           + P++ T V++LR C   GL  +  E   +     G    +     L++LY + GRL+ +
Sbjct: 338 INPDQATMVALLRACTDTGLGRQA-ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 396

Query: 246 LDVINKMPMKPHAGAWGALL 265
            D+  ++  +    AW A+L
Sbjct: 397 EDIFEEIKDRDTI-AWTAML 415



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  TA+++  AK G ++ +  +F+E+ +RD IAW AMLAGYA     REA+ LF LM 
Sbjct: 376 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMV 435

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              V+++ V+   +LSAC+H G +++G ++  +  E  R++  +   + +VD+  + G +
Sbjct: 436 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 495

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
             A +    M  E +   W +++G   + G
Sbjct: 496 EDAYELIKSMPMEPSSGVWGALLGACRVYG 525


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/442 (41%), Positives = 281/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +++   +++   AKCG++D   K+F  M   D I+WN ++A             + + 
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   +  +E +++ +L  C+ L    QG+  H YI ++  +  V +G AL++MYSKCG+
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGS 573

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +   +  F  MKE++V TWT++I    M G G+K+L+ F  M+ +GV P+ V F++ +  
Sbjct: 574 LENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFA 633

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+V+EG   FD M+ +Y +EP +EHY C+VDL  R+G L +A + I  MPMKP A 
Sbjct: 634 CSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDAS 693

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+ACR   NT + +  S+K++EL + + G YVL+SNIYA    WD+V  VR  MK
Sbjct: 694 LWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMK 753

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+KK PG S IE+ + V+ F  GD++  +Y++++ +L  + R +   GYVA+    ++
Sbjct: 754 TKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALH 813

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EE++K D LC HSE++AIAFGL++ K G P+ ++KNLRVC DCH VTK I+K+  REI
Sbjct: 814 DVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREI 873

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFH FK+G CSC  +W
Sbjct: 874 LVRDANRFHRFKDGACSCGDHW 895



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 3/252 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D V    +I   AKCGD+  A+++FD    +D + WN+++ GY Q G  +E L  F +
Sbjct: 354 ECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKM 413

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++ + K + V+ V +LS  + L  ++QGR  H  + +   +  + +G +L+D+Y+KCG 
Sbjct: 414 MKM-ERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGE 472

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M+  +  F  M   ++ +W +VI             ++ + M+  G+ P+E T + +L  
Sbjct: 473 MDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C ++ +  +G+E    + +  G E  +     L+++Y + G L+  + V   M  K    
Sbjct: 533 CSLLAVRRQGKEIHGYIFKS-GFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK-DVV 590

Query: 260 AWGALLNACRMY 271
            W AL++A  MY
Sbjct: 591 TWTALISAFGMY 602



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 179/374 (47%), Gaps = 32/374 (8%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELGC+ +   +  G  E D+    A+I   ++  D+D AR +F+EM  RD ++WN++++G
Sbjct: 138 ELGCIVHEHAMEMGF-ESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y   G   +AL ++H  ++  +  +  +M SVL AC  L A+ +G   H  IE+  +   
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGD 256

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V +G  L+ MY K   + +A   F  M  ++  TW ++I G A  G  E S++LF  M  
Sbjct: 257 VIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID 316

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE--HYGC--LVDLYGRA 239
            G  P+ ++  S +R C   G ++ G+        +Y I    E     C  L+D+Y + 
Sbjct: 317 -GFVPDMLSITSTIRACGQSGDLQVGK-----FVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLL 298
           G L  A +V +    K     W +L+N        + G L S K++++E K +   +VLL
Sbjct: 371 GDLLAAQEVFDTTKCKDSV-TWNSLINGYTQSGYYKEG-LESFKMMKMERKPDSVTFVLL 428

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
            +I+++         +  I + +G+     C VI+   E  E   G+     Y +     
Sbjct: 429 LSIFSQ---------LADINQGRGIH----CDVIKFGFEA-ELIIGNSLLDVYAKC---- 470

Query: 359 GEISRRLKLAGYVA 372
           GE+   LK+  Y++
Sbjct: 471 GEMDDLLKVFSYMS 484



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 3/244 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           V+    +IS  A+  D   +  +F  + P  +   WN+++      G   +AL  +  M+
Sbjct: 54  VIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMR 113

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  +  SV+++C  +  L+ G   H +      +  + +G AL+DMYS+  +++
Sbjct: 114 EKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLD 173

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  R+  +W S+I G   NG  E +L+++   +  G+ P+  T  SVL  C 
Sbjct: 174 NARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG 233

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +  V+EG      +  + GI   +     L+ +Y +  RL EA  V +KM +K     W
Sbjct: 234 SLMAVKEGVA-VHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSV-TW 291

Query: 262 GALL 265
             ++
Sbjct: 292 NTMI 295



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +F    E +V    A+I   +KCG ++   K+F  M E+D + W A+++ +   G+ ++A
Sbjct: 549 IFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKA 608

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVD 132
           L  F  M++  V  + V+ ++ + AC+H G + +G R+         L+  +     +VD
Sbjct: 609 LKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVD 668

Query: 133 MYSKCGNMNKAMDFFWGM 150
           + ++ G + +A +F   M
Sbjct: 669 LLARSGLLAQAEEFILSM 686



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MY++ G L  C KVF  + E DVV  TA+ISA    G+   A K F +M       D +A
Sbjct: 567 MYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVA 626

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQI-HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           + A +   +  G  +E L  F  M+  ++++        V+      G L Q   A  +I
Sbjct: 627 FIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQ---AEEFI 683

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKA 143
               +K   +L  AL+      GN N A
Sbjct: 684 LSMPMKPDASLWGALLSACRARGNTNIA 711


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/443 (41%), Positives = 292/443 (65%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV  Q ++I+   KC D++++  +F  M ++   +W+A++A +A      E L LF  
Sbjct: 164 EDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFED 223

Query: 80  MQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M      +  E  +V+VLSACTHLGA   GR AH  + +N  ++ V + T+L+DMY KCG
Sbjct: 224 MSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCG 283

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++ K +  F  M  +N  +++ +I GL ++G G ++L++FS M + G+ P++VT+VSVL 
Sbjct: 284 SLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLS 343

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG + FD M+ EY IEP ++HYGC+VDL GRAG L+EA  ++  MP+K + 
Sbjct: 344 ACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKAND 403

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W +LL+AC+++ N ++GE+A+  L  L + N   Y++LSN+YA ++ W+    +R  M
Sbjct: 404 VLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKM 463

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
             +G+ + PG S++EV  +V++F + D+++ +   I  M+ ++  +L+  GY+ +T+ VM
Sbjct: 464 INRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVM 523

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D++EEEK + L  HS+K+AIAF LI   +G  IRI++NLR+C DCH  TK++S ++ RE
Sbjct: 524 LDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYERE 583

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I VRDRNRFHHFK+G CSC+ YW
Sbjct: 584 ITVRDRNRFHHFKDGNCSCRDYW 606



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 4/237 (1%)

Query: 22  DVVCQTAMISACAKC--GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D  C +++++ CA      +D A  +F ++ E     +N M+ GY        A++L++ 
Sbjct: 63  DSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYND 122

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   +V+ +  +   VL AC  L  + +G   H ++ +  L+  V +  +L++MY KC +
Sbjct: 123 MLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRD 182

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLR 198
           +  +   F  M++++V +W+++I   A      + L LF  M + G  R  E   V+VL 
Sbjct: 183 IEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLS 242

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +G    GR    S+ +    E  +     L+D+Y + G L + L +   M  K
Sbjct: 243 ACTHLGAFHLGRCAHGSLLKNI-TELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRK 298



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 41/249 (16%)

Query: 8   LGYCQ--KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           LG C    +   I E +V   T+++    KCG +     +F  M  ++ ++++ +++G  
Sbjct: 252 LGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLG 311

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
             G  R+AL +F  M    ++ ++V+ VSVLSAC+H G +D+G                 
Sbjct: 312 LHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEG----------------- 354

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL--ELFSLMKQ 183
                             +D F  MK       T    G  ++  G   L  E F L++ 
Sbjct: 355 ------------------LDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQS 396

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
             ++ N+V + S+L  C V   ++ G    +++ R     P    Y  L ++Y RA + +
Sbjct: 397 MPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNP--SDYLVLSNMYARAQQWE 454

Query: 244 EALDVINKM 252
            A  +  KM
Sbjct: 455 NAAKIRTKM 463


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/442 (44%), Positives = 282/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    A+I   AKCG V+ AR++FD++ ERD + WN+MLA Y+Q G+  E+L L  +
Sbjct: 134 ESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRV 193

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M  + +K  E + V  ++A    G L QG+  H Y  R+  +    + TAL+DMY+K G+
Sbjct: 194 MAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGS 253

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A   F  ++E+ V +W ++I G AM+G   ++L+LF  MK   V P+ +TFV VL  
Sbjct: 254 VNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPDHITFVGVLAA 312

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+ EG+ HF SM  ++ I P ++HY C++DL G  GRL+EA  +I +M ++P AG
Sbjct: 313 CSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAG 372

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL++C+++ N EMGELA  KLVELE  + G YV+LSN+YA++  WD V  +R +M 
Sbjct: 373 VWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMM 432

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+KK   CS IEV  +VH F + D +HP+   I   L    + +K AGY      V +
Sbjct: 433 NKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFH 492

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E++EK D +  HSE++AIAFGLIS   G  + I+KNLR+C DCH   K ISK+  REI
Sbjct: 493 DVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREI 552

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            +RD NR+HHFK+G CSC  +W
Sbjct: 553 TIRDVNRYHHFKDGVCSCGDFW 574



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 131/246 (53%), Gaps = 4/246 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +++    C  +  A  +FD + +R+   WN M+ GYA  G    A+ L++ M+ + + 
Sbjct: 40  TKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLV 99

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            ++ +   VL AC+ L A+++G+  H  + R+ L+  V +G AL+DMY+KCG +  A   
Sbjct: 100 PDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQV 159

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + ER+V  W S++   + NG  ++SL L  +M   G++P E TFV  +      GL+
Sbjct: 160 FDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLL 219

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            +G+E H  S R  +G E   +    L+D+Y ++G ++ A  +   +  K    +W A++
Sbjct: 220 PQGKELHGYSWR--HGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEK-RVVSWNAMI 276

Query: 266 NACRMY 271
               M+
Sbjct: 277 TGYAMH 282



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L +C    A++ G+  H  I +  +     L T LV++Y  C ++  A   F  + +R
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           N++ W  +I G A NG  E ++ L+  M+  G+ P++ TF  VL+ C  +  +EEG++ H
Sbjct: 66  NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            D +R   G+E  +     L+D+Y + G ++ A  V +K+
Sbjct: 126 KDVIRS--GLESDVFVGAALIDMYAKCGCVESARQVFDKI 163


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/457 (41%), Positives = 290/457 (63%), Gaps = 5/457 (1%)

Query: 8   LGYCQKVFDGIHE-PDVVCQTAMISACAKCG--DVDLARKMFDEMPERDPIAWNAMLAGY 64
           L  C+++ DG+ + PD     +++ A       +V    +MF  + ++  ++WN M++ Y
Sbjct: 219 LDICREM-DGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVY 277

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            +     +++ L+  M   +V+ + ++  SVL AC  L AL  GR  H Y+ER +L   +
Sbjct: 278 MKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNM 337

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            L  +L+DMY++CG +  A   F  MK R+V +WTS+I    M G G  ++ LF+ M+ +
Sbjct: 338 LLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNS 397

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           G  P+ + FV++L  C   GL+ EG+ +F  M  +Y I P +EH+ CLVDL GR+GR+DE
Sbjct: 398 GQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDE 457

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           A ++I +MPMKP+   WGALL++CR+Y N ++G LA+ KL++L  +  G YVLLSNIYA+
Sbjct: 458 AYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAK 517

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
           +  W  V  +R +MK + ++K+PG S +E++ +VH F AGD  HP+  EI   L  +  +
Sbjct: 518 AGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGK 577

Query: 365 LKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDC 424
           +K  GYV  T+  ++D+EEE+KE  L  HSEK+AI F +++ +E  PIRI KNLRVC DC
Sbjct: 578 MKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQES-PIRITKNLRVCGDC 636

Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           H   K+ISK+  REI++RD NRFHHFK+G CSC  YW
Sbjct: 637 HIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 14/287 (4%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            KVF+     +      ++ A A  G+  LAR +FD +PER+ I +N M+  Y       
Sbjct: 56  SKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYD 115

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           +AL +F  M       +  +   VL AC+    L  G   H  + +  L + + +G  L+
Sbjct: 116 DALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLI 175

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
            +Y KCG + +A      M+ ++V +W S++ G A N   + +L++   M     +P+  
Sbjct: 176 ALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDAC 235

Query: 192 TFVSVLRGCCVVGLVEEG----REHFDSMRRE------YGIEPWLEHY--GCLVDLYGRA 239
           T  S+L    V     E      E F ++ ++        I  ++++   G  VDLY + 
Sbjct: 236 TMASLLPA--VTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQM 293

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           G+ +   D I    +    G   ALL   R+++  E  +L    L+E
Sbjct: 294 GKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLE 340



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 76/262 (29%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  GCL   ++VFD +   DV   T++ISA                            
Sbjct: 346 MYARCGCLEDAKRVFDRMKFRDVASWTSLISA---------------------------- 377

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-R 119
              Y   G+   A+ LF  MQ      + ++ V++LSAC+H G L++G++    +  + +
Sbjct: 378 ---YGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYK 434

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +   +     LVD+  + G +++A                                  ++
Sbjct: 435 ITPIIEHFACLVDLLGRSGRVDEA----------------------------------YN 460

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           ++KQ  ++PNE  + ++L  C V   ++ G    D + +    E    +Y  L ++Y +A
Sbjct: 461 IIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESG--YYVLLSNIYAKA 518

Query: 240 GRLDEALDV--------INKMP 253
           GR  E   +        I KMP
Sbjct: 519 GRWTEVTAIRSLMKRRRIRKMP 540


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/458 (41%), Positives = 286/458 (62%), Gaps = 11/458 (2%)

Query: 15  FDGIHEP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ------ 66
           F G H    D V   A++   A+CG +   RK+FD +   D  AWNA+L+ YA+      
Sbjct: 167 FLGAHAASCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDV 226

Query: 67  -CGKSRE--ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
            C  S     L +F  M    +K NE+++V+V+ AC  LGA+  G WAH Y  + RL + 
Sbjct: 227 ACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVN 286

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             + TALV+MY+ CG ++ A   F    +R+   + +++ GLA++G G  +L LF  M  
Sbjct: 287 CIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHG 346

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV  + VT +SV+  C   GLV+EG ++FD M  E+GIEP +EHYGC+VD+  RAGRL+
Sbjct: 347 EGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLN 406

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           +A  +I+ MP+ P+A  + +L+ AC ++   E+G+    +L+ LE  + G +VL+SN YA
Sbjct: 407 DAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYA 466

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            +  WD     R+ MK+ G+ K PG S ++++  +HEF  GD+THP   EI  M+ +I  
Sbjct: 467 TTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIET 526

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           RL   G+ ++T+  ++D+EEE+K D L  HSE++AIAF LI+   G PIRI+KNLRVC D
Sbjct: 527 RLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCAD 586

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH+  K++S+V+ REI++RDR RFHHF++G CSC  +W
Sbjct: 587 CHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 287/445 (64%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E  V   ++++   AK G +  AR +F  +PERD ++  A+++GYAQ G   EAL LF 
Sbjct: 190 YEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFR 249

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +Q   ++ N V+  SVL+A + L ALD G+  H ++ R+ +   V L  +L+DMYSKCG
Sbjct: 250 RLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCG 309

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVL 197
           N+  A   F  + ER V +W +++ G + +G G + LELF+LM  +  V+P+ VT ++VL
Sbjct: 310 NLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVL 369

Query: 198 RGCCVVGLVEEGREHF-DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            GC   GL ++G + F D    +  ++P  +HYGC+VD+ GRAGR++ A + + KMP +P
Sbjct: 370 SGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEP 429

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  WG LL AC ++ N ++GE    +L+++E +N G YV+LSN+YA +  W+ V ++R 
Sbjct: 430 SAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRN 489

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  K V K PG S IE+D+ +H F A D +HPR  E+   + E+S R K AGYV + + 
Sbjct: 490 LMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSC 549

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V++D++EE+KE  L  HSEK+A+ FGLI+  E VPIR++KNLR+C DCH+  K  SK++ 
Sbjct: 550 VLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYG 609

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           RE+ +RD+NRFH    GKCSC  YW
Sbjct: 610 REVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 136/246 (55%), Gaps = 4/246 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P V  +T +I    KC  +  AR +FD MPER+ ++W AM++ Y+Q G + +AL LF  M
Sbjct: 91  PCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQM 150

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                + NE +  +VL++C        GR  H +I +   +  V +G++L+DMY+K G +
Sbjct: 151 LRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKI 210

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           ++A   F  + ER+V + T++I G A  G  E++LELF  +++ G++ N VT+ SVL   
Sbjct: 211 HEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTAL 270

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             +  ++ G++ H   +R E  +  ++     L+D+Y + G L  A  + + +  +    
Sbjct: 271 SGLAALDHGKQVHNHLLRSE--VPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERT-VI 327

Query: 260 AWGALL 265
           +W A+L
Sbjct: 328 SWNAML 333



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 17/232 (7%)

Query: 80  MQIHDVKLNEVSM--------------VSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           + IHD +L E  +               +VL+ C    A+ +G+  H ++ +      V 
Sbjct: 35  IHIHDTRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVY 94

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L T L+  Y KC ++  A   F  M ERNV +WT++I   +  G   ++L LF  M ++G
Sbjct: 95  LRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSG 154

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
             PNE TF +VL  C        GR+ H   ++  Y    ++     L+D+Y + G++ E
Sbjct: 155 TEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVG--SSLLDMYAKDGKIHE 212

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           A  +   +P +        +    ++  + E  EL  R   E    N+  Y 
Sbjct: 213 ARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYT 264



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 39/175 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G L Y +++FD +HE                               R  I+WNAM
Sbjct: 304 MYSKCGNLTYARRIFDTLHE-------------------------------RTVISWNAM 332

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L GY++ G+ RE L LF+LM   + VK + V++++VLS C+H G  D+G    ++ +   
Sbjct: 333 LVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKG--MDIFYDMTS 390

Query: 120 LKMTVTLGTA----LVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
            K++V   +     +VDM  + G +  A +F   M  E +   W  ++G  +++ 
Sbjct: 391 GKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHS 445


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/443 (42%), Positives = 279/443 (62%), Gaps = 1/443 (0%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFH 78
            E D   + A+I   AKCG +  A  +F++    +D + WN ++A Y Q G ++EA+  FH
Sbjct: 563  ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFH 622

Query: 79   LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
             M++ +   N V+ VSVL A  +L A  +G   H  I +        +G +L+DMY+KCG
Sbjct: 623  QMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG 682

Query: 139  NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
             +  +   F  M  ++  +W +++ G A++G G++++ LFSLM+++ V+ + V+FVSVL 
Sbjct: 683  QLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742

Query: 199  GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             C   GLVEEGR+ F SM  +Y I+P LEHY C+VDL GRAG  DE L  I  MP++P A
Sbjct: 743  ACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 802

Query: 259  GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            G WGALL +CRM+ N ++GE+A   LV+LE +N   +V+LS+IYA+S  W      R  M
Sbjct: 803  GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKM 862

Query: 319  KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
               G+KK PGCS +E+  +VH F  GD++HP+   + ++   +  +++  GYV + + V+
Sbjct: 863  NDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVL 922

Query: 379  YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++EEE+KE  L  HSE++AI F L++   G  I+IVKNLRVC DCH  TK ISK+  R 
Sbjct: 923  QNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRR 982

Query: 439  IIVRDRNRFHHFKEGKCSCKGYW 461
            IIVRD  RFHHF++G CSC  YW
Sbjct: 983  IIVRDATRFHHFEDGICSCNDYW 1005



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 136/242 (56%), Gaps = 4/242 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
              +I   +KCGDVD+AR++FD+M ++D ++W  M+AGYA  G   E L LF  M++ +V
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           ++N+VS VS   A      L++G+  H    + R+   + + T L+ MY+KCG   KA  
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            FWG++ R++  W+++I  L   G  E++L LF  M+   ++PN VT +S+L  C  + L
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           ++ G+  H  +++ +  ++  L     LV +Y + G    AL   N+M  +     W +L
Sbjct: 446 LKLGKSIHCFTVKAD--MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIV-TWNSL 502

Query: 265 LN 266
           +N
Sbjct: 503 IN 504



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 1/248 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D++  T ++   AKCG+ + A+++F  +  RD +AW+A++A   Q G   EAL LF  
Sbjct: 361 DSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE 420

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +K N V+++S+L AC  L  L  G+  H +  +  +   ++ GTALV MY+KCG 
Sbjct: 421 MQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGF 480

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
              A+  F  M  R++ TW S+I G A  G    ++++F  ++ + + P+  T V V+  
Sbjct: 481 FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C ++  +++G      +  + G E        L+D+Y + G L  A  + NK        
Sbjct: 541 CALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 260 AWGALLNA 267
            W  ++ A
Sbjct: 600 TWNVIIAA 607



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 40  DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
           DLAR +FD  P    I WN+M+  Y +  +  EAL +++ M    ++ ++ +   VL AC
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
           T    L +G W H  I+R  L+  V +G  LVDMYSK G++ +A + F  M +R+V  W 
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRR 218
           ++I GL+ +    ++++ F  M+  GV P+ V+ +++  G C +  +E  R  H    RR
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR 259

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++           L+DLY + G +D A  V ++M  +    +WG ++
Sbjct: 260 DFSSAV----SNGLIDLYSKCGDVDVARRVFDQMVDQDDV-SWGTMM 301



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 108/192 (56%), Gaps = 2/192 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     ++   +K GD+  AR++FD+MP+RD +AWNAM+AG +Q     EA+  F  
Sbjct: 161 ERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRS 220

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ+  V+ + VS++++      L  ++  R  H Y+ R      V+ G  L+D+YSKCG+
Sbjct: 221 MQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGD 278

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  M +++  +W +++ G A NG   + LELF  MK   VR N+V+ VS    
Sbjct: 279 VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338

Query: 200 CCVVGLVEEGRE 211
                 +E+G+E
Sbjct: 339 AAETIDLEKGKE 350



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 36/181 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L Y +K+F+ +   D V   AM+S                             
Sbjct: 677 MYAKCGQLXYSEKLFNEMDHKDTVSWNAMLS----------------------------- 707

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNR 119
             GYA  G    A+ LF LMQ   V+++ VS VSVLSAC H G +++GR   H   ++  
Sbjct: 708 --GYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYH 765

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG---AGEKSL 175
           +K  +     +VD+  + G  ++ + F   M  E +   W +++G   M+     GE +L
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 176 E 176
           +
Sbjct: 826 D 826


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/462 (42%), Positives = 289/462 (62%), Gaps = 4/462 (0%)

Query: 3   AELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           A  G +G  + +F    E  D +  TAM+S     G+V  A + F  MP R+ ++WNA++
Sbjct: 145 ASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVV 204

Query: 62  AGYAQCGKSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           AGY +  ++ +AL +F  M + D  V+ N  ++ SVL  C++L AL  GR  H +  +  
Sbjct: 205 AGYVKNSRAGDALRVFKTM-VEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLP 263

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L  ++T+GT+L+ MY KCG+++ A   F  M  +++  W ++I G A +G G K+++LF 
Sbjct: 264 LGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFE 323

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK  GV P+ +T ++VL  C   GL + G + F++M+  Y IEP ++HY C+VDL  RA
Sbjct: 324 KMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRA 383

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L+ A+++I+ MP +PH  A+G LL ACR+YKN E  E A+RKL+E + +N GAYV L+
Sbjct: 384 GLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLA 443

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA +  WD V  VR+ MK   V K PG S +E+    HEF + D  HP+ + I   L 
Sbjct: 444 NIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLD 503

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
            + + +K  GY  + +  ++D+EE  K   L +HSEK+AIAFGLIS   G+ +RI KNLR
Sbjct: 504 RLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLR 563

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH+  K+ISK+ +REII+RD  RFHHF+ G CSC  YW
Sbjct: 564 ICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 14/264 (5%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G L   +++FD I  PD V    ++S    CGD+D A ++F  MP RD  +WN M++G +
Sbjct: 55  GRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLS 114

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-V 124
           + G   EA  +F  M   +  ++  +MV+  ++   +GA +        + RN  + T  
Sbjct: 115 KNGAIEEAEAMFRAMPARNA-VSWNAMVAARASSGDMGAAEN-------LFRNAPEKTDA 166

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQ 183
            L TA+V  Y   GN+ KAM++F  M  RN+ +W +V+ G   N     +L +F ++++ 
Sbjct: 167 ILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVED 226

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           A V+PN  T  SVL GC  +  +  GR+ H   M+   G    +     L+ +Y + G L
Sbjct: 227 AIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRS--ITVGTSLLSMYCKCGDL 284

Query: 243 DEALDVINKMPMKPHAGAWGALLN 266
           D+A  + ++M  K    AW A+++
Sbjct: 285 DDACKLFDEMHTKDIV-AWNAMIS 307



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 32/151 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L    K+FD +H  D+V   AMIS                             
Sbjct: 277 MYCKCGDLDDACKLFDEMHTKDIVAWNAMIS----------------------------- 307

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
             GYAQ G  R+A+ LF  M+   V  + +++++VL+AC H G  D G +      E   
Sbjct: 308 --GYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYN 365

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           ++  V   + +VD+  + G + +A++    M
Sbjct: 366 IEPQVDHYSCMVDLLCRAGLLERAVNMIHSM 396


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 278/435 (63%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
            ++I+   K G +D A ++F+EMP R  ++WN+M+  +   G + + + LF+LM+   + 
Sbjct: 260 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN 319

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            ++ +MV++L ACT  G   Q    H YI R      + + TAL+++Y+K G +N + D 
Sbjct: 320 PDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 379

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +K+R+   WT+++ G A++  G ++++LF LM + GV  + VTF  +L  C   GLV
Sbjct: 380 FEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLV 439

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEG+++F+ M   Y +EP L+HY C+VDL GR+GRL++A ++I  MPM+P +G WGALL 
Sbjct: 440 EEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLG 499

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           ACR+Y N E+G+  + +L+ L+  +H  Y++LSNIY+ +  W     VR +MK + + + 
Sbjct: 500 ACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRN 559

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           PGCS IE   ++H F  GD+ HPR +EI   L E+ R+++ AG    T  V++DI+EE K
Sbjct: 560 PGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVK 619

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
            D + KHSEK+AIAFGL+    GVP+ I KNLR+C DCH   K  S +  R II+RD  R
Sbjct: 620 VDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKR 679

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF +G CSC+ YW
Sbjct: 680 FHHFADGLCSCRDYW 694



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 142/263 (53%), Gaps = 7/263 (2%)

Query: 8   LGYCQ----KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           + YC     +V   ++  D      ++S   K G  + A+++FDEMP +D ++WN++++G
Sbjct: 135 VSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSG 194

Query: 64  YAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
            +  G     L+ F  M+    +  NEV+++SV+SAC  +GALD+G+  H  + +  +  
Sbjct: 195 LSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSG 254

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
              +  +L++MY K G ++ A   F  M  R++ +W S++     NG  EK ++LF+LMK
Sbjct: 255 KAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMK 314

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
           +AG+ P++ T V++LR C   GL  +  E   +     G    +     L++LY + GRL
Sbjct: 315 RAGINPDQATMVALLRACTDTGLGRQA-ESIHAYIHRCGFNADIIIATALLNLYAKLGRL 373

Query: 243 DEALDVINKMPMKPHAGAWGALL 265
           + + D+  ++  +    AW A+L
Sbjct: 374 NASEDIFEEIKDRDRI-AWTAML 395



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++  TA+++  AK G ++ +  +F+E+ +RD IAW AMLAGYA     REA+ LF LM 
Sbjct: 356 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMV 415

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              V+++ V+   +LSAC+H G +++G ++  +  E  R++  +   + +VD+  + G +
Sbjct: 416 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 475

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLEL 177
             A +    M  E +   W +++G   + G  E   E+
Sbjct: 476 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEV 513


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/441 (42%), Positives = 274/441 (62%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D V  TA++    KCG ++ AR +FD+M ++D ++W  M+    + G+ +E   LF  
Sbjct: 228 ELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRD 287

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +    V+ NE +   VL+AC  L A   G+  H Y+ R          +ALV +YSKCGN
Sbjct: 288 LMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGN 347

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
              A   F  M   ++ +WTS+I G A NG  + +L+ F  + ++G +P+E+TFV VL  
Sbjct: 348 TETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSA 407

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+ G E+F S++ ++G+    +HY C++DL  R+GR  EA ++I+ MPMKP   
Sbjct: 408 CTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKF 467

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +LL  CR++ N E+ E A++ L ELE +N   Y+ LSNIYA +  W     VR  M 
Sbjct: 468 LWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMD 527

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+ K PG S IE+ R+VH F  GD +HP+ ++I   LGE+S+++K  GYVA+TN V++
Sbjct: 528 NRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLH 587

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEE+KE  +  HSEK+A+AFG+IS   G PI++ KNLR C DCH+  K ISK+  R+I
Sbjct: 588 DVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKI 647

Query: 440 IVRDRNRFHHFKEGKCSCKGY 460
           IVRD NRFH F +G CSCK Y
Sbjct: 648 IVRDSNRFHCFVDGSCSCKDY 668



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 151/266 (56%), Gaps = 3/266 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   Q +FD I + D+     MIS  A  G ++ ARK+FDEMP RD  +WNA+
Sbjct: 107 MYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAV 166

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY   G   EAL LF +MQ ++    N  ++ S L+A   + +L +G+  H Y+ R+ 
Sbjct: 167 ISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSG 226

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L++   + TAL+D+Y KCG++N+A   F  M ++++ +WT++I     +G  ++   LF 
Sbjct: 227 LELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFR 286

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            +  +GVRPNE TF  VL  C  +   + G+E    M R  G +P+      LV +Y + 
Sbjct: 287 DLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTR-VGYDPFSFAASALVHVYSKC 345

Query: 240 GRLDEALDVINKMPMKPHAGAWGALL 265
           G  + A  V N+MP +P   +W +L+
Sbjct: 346 GNTETARRVFNQMP-RPDLVSWTSLI 370



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++P     +A++   +KCG+ + AR++F++MP  D ++W +++ GYAQ G+   AL  F 
Sbjct: 328 YDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFE 387

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +     K +E++ V VLSACTH G +D G  + H   E++ L  T      ++D+ ++ 
Sbjct: 388 SLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARS 447

Query: 138 GNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNG 169
           G   +A +    M  + + + W S++GG  ++G
Sbjct: 448 GRFKEAENIIDNMPMKPDKFLWASLLGGCRIHG 480



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 44/240 (18%)

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           + Q  + +EA+   H +     +L      ++++AC     L+ G+  H + + +     
Sbjct: 42  FCQQNRLKEAVDYLHRIPQPSPRLYS----TLIAACLRHRKLELGKRVHAHTKASNFIPG 97

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           + +   L+ MY+KCG++  A   F  + ++++ +W ++I G A  G  E++ +LF  M  
Sbjct: 98  IVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPH 157

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM--------------------------R 217
                +  ++ +V+ G    G   E  + F  M                          R
Sbjct: 158 R----DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLR 213

Query: 218 REYGIEPWLEHYG---------CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           R   I  +L   G          L+DLYG+ G L+EA  + ++M  K    +W  +++ C
Sbjct: 214 RGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIV-SWTTMIHRC 272


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/458 (42%), Positives = 287/458 (62%), Gaps = 8/458 (1%)

Query: 12  QKVFDGIHE-------PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           +K  D  HE       PD V  ++++ A  + G +D ARK+F E+ E+D + W  M+ G 
Sbjct: 238 EKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGC 297

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           AQ GK  +AL LF  M + + + +  ++ SV+S+C  L +L  G+  H       +   +
Sbjct: 298 AQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDL 357

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            + +ALVDMY KCG    A   F  M+ RNV +W S+IGG A+NG   ++L L+  M + 
Sbjct: 358 LVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEE 417

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            ++P+ VTFV VL  C   GLVEEG+E+F SM  ++G+EP  +HY C+V+L+GR+G +D+
Sbjct: 418 NLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDK 477

Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           A+D+I+ M  +P++  W  +L+ C M  + + GE+A+R L+EL   N   Y++LSN+YA 
Sbjct: 478 AVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAA 537

Query: 305 SKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRR 364
              W  V ++R +MK+K VKK    S IE+D EVH+F A D THP    I V L  + R+
Sbjct: 538 RGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRK 597

Query: 365 LKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGV-PIRIVKNLRVCWD 423
           L+ AG+  NTN V++D  E+EK +++  HSEK+A+A+GLI    GV PIRI+KN+R C D
Sbjct: 598 LQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCAD 657

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH   K +S +  R +I+RD NRFHHF EGKCSCK YW
Sbjct: 658 CHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 154/286 (53%), Gaps = 8/286 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G + + +K+FD + + D     AM+S  AK G V+  R +FD MP RD +++N +
Sbjct: 67  LYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTV 126

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G+A  G+   AL +F  MQ   +K  E + VSVL+ACT L  L +G+  H  I    L
Sbjct: 127 ISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNL 186

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V +  AL D+Y++CG +++A   F  M  RNV TW  +I G   N   EK ++LF  
Sbjct: 187 GGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHE 246

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ + ++P++VT  SVL      G ++E R+ F  +R +  +   +   GC      + G
Sbjct: 247 MQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGC-----AQNG 301

Query: 241 RLDEALDVINKMPM---KPHAGAWGALLNACRMYKNTEMGELASRK 283
           + ++AL + ++M +   +P      +++++C    +   G++   K
Sbjct: 302 KEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGK 347


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/440 (44%), Positives = 285/440 (64%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV+ QT+++   AK G ++LA  +F  M  ++ I+W+A+++G+AQ G +  AL L   MQ
Sbjct: 240 DVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQ 299

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K + VS+VSVL AC+ +G L  G+  H YI R RL       TA++DMYSKCG+++
Sbjct: 300 SFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLS 358

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  R+  +W ++I    ++G+GE++L LF  M++  V+P+  TF S+L    
Sbjct: 359 FARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFS 418

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVE+GR  F  M  EY I+P  +HY C+VDL  RAGR++EA ++I  M  +P    W
Sbjct: 419 HSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIW 478

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ C  +    +GE+A++K++EL   + G Y L+SN +A ++ WD V  VR+IMK  
Sbjct: 479 VALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKT 538

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK+PG SV+EV+ ++H F   D++H +Y EI  +LG++   +K  GYV  T  V++++
Sbjct: 539 GMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNL 598

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE KE  LC HSE++AIAFGL++   G  + I KNLRVC DCH+ TK ISK+ NREI+V
Sbjct: 599 EEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVV 658

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC  YW
Sbjct: 659 RDVKRFHHFKDGVCSCGDYW 678



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 156/300 (52%), Gaps = 14/300 (4%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           ++  D  +  DV    A+++  AKCG +D A ++FD+M  RD + W  M+ G AQ G++R
Sbjct: 129 RQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAR 188

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EA+ ++  M    V+ + V M+ ++ ACT LG    G   H Y+ R  + M V + T+LV
Sbjct: 189 EAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLV 248

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DMY+K G++  A   F  M  +NV +W+++I G A NG    +L+L   M+  G +P+ V
Sbjct: 249 DMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSV 308

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-----LVDLYGRAGRLDEAL 246
           + VSVL  C  VG ++ G+     + R         H+ C     ++D+Y + G L  A 
Sbjct: 309 SLVSVLLACSQVGFLKLGKSVHGYIVRRL-------HFDCVSSTAVIDMYSKCGSLSFAR 361

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLLSNIYAES 305
            V +++  +    +W A++ +  ++ + E       ++ E   K +H  +  L + ++ S
Sbjct: 362 TVFDQISFRDSI-SWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHS 420



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 128/240 (53%), Gaps = 4/240 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I + A+ G ++ AR++FD+ P+    AWNAM+  Y++ G   EAL L+H M    V+ +
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             +   VL ACT    L  G               V +G A++++Y+KCG M++AM  F 
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R++  WT++I GLA NG   ++++++  M +  V  + V  + +++ C  +G  + 
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G   H   +R++  ++  ++    LVD+Y + G L+ A  V  +M  K +  +W AL++ 
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQ--TSLVDMYAKNGHLELASCVFRRMLYK-NVISWSALISG 281


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/439 (42%), Positives = 286/439 (65%), Gaps = 3/439 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE--ALHLF-HLMQI 82
           +  ++    +CG +   R++FD +   D  AWNA+L+ Y +C  S     L LF  ++ +
Sbjct: 158 RAVLLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISL 217

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             V+ NE+++V+V+ AC  LGAL  G WAH Y+ + +L +   + TALV+MY+ CG ++ 
Sbjct: 218 GTVRPNEITLVAVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDL 277

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F    +R+   + +++ GLA +G G  +L+LF  M+ +GV  + VT +SVL  C  
Sbjct: 278 AEHVFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAH 337

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
             LV+EG E+FD M  E+GIEP +EHYGC+VD+  RAGRLD+A  +I++MP+ P+A  + 
Sbjct: 338 AELVDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYR 397

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           +L+ AC ++ N E+GE    +L + +  + G +VL++N+YA    W+     R+ MK+ G
Sbjct: 398 SLIRACDIHGNLELGERMITELRQHDPDDSGNHVLIANLYARMNRWEEAKKTRKEMKSMG 457

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           + K PG S+++++  +HEF  GD+THP   EI  M+ EI  RL   G+ ++T  V++D+E
Sbjct: 458 IDKSPGSSLLDMNGVLHEFLVGDKTHPASKEIYTMVEEIEARLSEHGHRSSTTSVLFDVE 517

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           EE+K DTL  HSE++AI F LI+   G PIRI+KNLRVC DCH+  K++S+V+ REI++R
Sbjct: 518 EEDKADTLTYHSERLAIPFALIASDPGTPIRIIKNLRVCADCHESAKLVSRVYGREIVMR 577

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           DR RFHHF+EG+CSC  +W
Sbjct: 578 DRTRFHHFREGECSCGDFW 596



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 51/230 (22%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +  TA++   A CG +DLA  +F    +RD   +NAML G A  G  R AL LF  M+  
Sbjct: 260 IVTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGS 319

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT--------ALVDMYS 135
            V ++ V+++SVL +C H   +D+G     Y +    KM +  G          +VDM S
Sbjct: 320 GVPVDGVTILSVLCSCAHAELVDEGLE---YFD----KMEIEFGIEPRIEHYGCVVDMLS 372

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           + G ++ A                            EK      L+ +  + PN   + S
Sbjct: 373 RAGRLDDA----------------------------EK------LIHEMPIVPNAAIYRS 398

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           ++R C + G +E G      +R+    +    ++  + +LY R  R +EA
Sbjct: 399 LIRACDIHGNLELGERMITELRQHDPDDSG--NHVLIANLYARMNRWEEA 446


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 287/445 (64%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E  +   ++++   AK G +  A  +F  +PERD +A  A+++GYAQ G   EAL LF 
Sbjct: 222 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 281

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +QI  +  N V+  SVL+A + L AL+ G+  H ++ R+     V L  +L+DMYSKCG
Sbjct: 282 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCG 341

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVL 197
           N+  A   F  M ER   +W +++ G + +G   + LELF LM++   V+P+ +T+++VL
Sbjct: 342 NVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVL 401

Query: 198 RGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            GC    L + G E F +M   + GIEP + HYGC+VDL GRAGR++EA D I KMP  P
Sbjct: 402 SGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVP 461

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  WG+LL +CR++ + E+G +  +KL+ELE +N G YV+LSN+YA +  W+ + N+R 
Sbjct: 462 TAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRD 521

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M+ K V K PG S +E+D+ VH F A D THPR  E+   + E+S + K  GYV + + 
Sbjct: 522 LMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSC 581

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+YD++EE+KE  L  HSEK+A+AFGLI+  EG  IR++KNLR+C DCH   K +S+++ 
Sbjct: 582 VLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYA 641

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R +I+RD+NRFH+   G CSC  YW
Sbjct: 642 RTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 2/245 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P V  +T +I    KC  +  AR+MFDEMP+++ ++W AM++ Y+Q G + EAL+LF  M
Sbjct: 123 PSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEM 182

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D + N  +  ++L++C      + GR  H    +   +  + +G++L+DMY+K G +
Sbjct: 183 LRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRI 242

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  + ER+V   T++I G A  G  E++L+LF  ++  G+  N VT+ SVL   
Sbjct: 243 CDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTAL 302

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             +  +  G++    + R  G   ++     L+D+Y + G +  A  + + MP +    +
Sbjct: 303 SGLAALNHGKQVHSHVLRS-GQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERT-CIS 360

Query: 261 WGALL 265
           W A+L
Sbjct: 361 WNAML 365



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++L+ C    A+ +G+  H ++ +     +V L T L+ +Y+KC  +  A + F  M ++
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQK 154

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           NV +WT++I   +  G   ++L LF  M ++   PN  TF ++L  C      E GR+ H
Sbjct: 155 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 214

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
             +++R Y  E  +     L+D+Y ++GR+ +A  V + +P
Sbjct: 215 SIAIKRNY--ESHMFVGSSLLDMYAKSGRICDAHGVFHCLP 253


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 283/445 (63%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E  V   T ++   A+ G V  A  +F  MP+++ ++W+AM+A YA+     +AL LF 
Sbjct: 210 YEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQ 269

Query: 79  LMQIH--DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           +M +   D   N ++MVSVL AC  L AL+ G+  H Y+ R  L  T+ +   L+ MY +
Sbjct: 270 IMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGR 329

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++     F  MK+R+V +W S+I    M+G G+K++++F  M   GV P+ +TF++V
Sbjct: 330 CGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITV 389

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLVEE +  F+SM  +Y I P +EHY C+VD+ GRA RLDEA+++I  M  KP
Sbjct: 390 LCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKP 449

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               WG+LL +CR++ N E+ E AS  L ELE KN G YVLLS+IYA+S+ W+ V  VR+
Sbjct: 450 GPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRK 509

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
            ++++G++K+P CS IEV R+++   + +E +P+  E+   L  +   +K  GYV  TN 
Sbjct: 510 QLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNV 569

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V YD++EEEKE  +  HS K+A+AFGLI+  +G  IRI  NLR+C DCH   K +SK  N
Sbjct: 570 VTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTN 629

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           REI++RD NRFH FK+G CSC  YW
Sbjct: 630 REILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 10/259 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D    T +I+     G VD A K+FDE  E+    WNA+    A   +  + L L+  
Sbjct: 106 DQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQ 165

Query: 80  MQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           M    +  N  +   VL AC      +  L +G+  H +I R+  +  V + T L+D+Y+
Sbjct: 166 MNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYA 225

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVRPNEVTF 193
           + G ++ A   F  M ++N+ +W+++I   A N    K+LELF +M  +     PN +T 
Sbjct: 226 RFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITM 285

Query: 194 VSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           VSVL+ C  +  +E G+  H   +RR  G++  L     L+ +YGR G +     V + M
Sbjct: 286 VSVLQACASLAALEHGKLVHAYVLRR--GLDSTLPVLNTLITMYGRCGEISTGQRVFDYM 343

Query: 253 PMKPHAGAWGALLNACRMY 271
             K    +W +L++   M+
Sbjct: 344 K-KRDVISWNSLISIYGMH 361



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 7/199 (3%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           ++++C    +L  G   H  +  + L     L T L++MY   G+++ A   F   +E+ 
Sbjct: 80  LINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKT 139

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL----VEEGR 210
           ++ W ++   LAM   GE  L L+  M   G+  N  T+  VL+ C V  L    + +G+
Sbjct: 140 IFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGK 199

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           E    + R +G E  +     L+D+Y R G +  A  V   MP K +  +W A++ AC  
Sbjct: 200 EIHAHILR-HGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDK-NIVSWSAMI-ACYA 256

Query: 271 YKNTEMGELASRKLVELET 289
                M  L   +++ LE 
Sbjct: 257 KNEMPMKALELFQIMMLEA 275


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/442 (44%), Positives = 287/442 (64%), Gaps = 3/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EP ++   ++ +  AKCG V +A+  FD+M   + I WNAM++GYA+ G + EA++LFH 
Sbjct: 289 EPALL--ISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHY 346

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   ++K + V++ S + A   +G+L+  +W   Y+ ++     + + T+L+DMY+KCG+
Sbjct: 347 MISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGS 406

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F    +++V  W+++I G  ++G G +++ L+ +MKQAGV PN+VTF+ +L  
Sbjct: 407 VEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTA 466

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG E F  M+ ++ I P  EHY C+VDL GRAG L EA   I K+P++P   
Sbjct: 467 CNHSGLVKEGWELFHCMK-DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVS 525

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+AC++Y+   +GE A+ KL  L+  N G YV LSN+YA S  WD V +VR +M+
Sbjct: 526 VWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMR 585

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K  G SVIE++ ++  F  GD++HP   EI   L  + RRLK  G+V  T  V++
Sbjct: 586 EKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLH 645

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+  EEKE+ L  HSE++A+A+GLIS   G  +RI KNLR C +CH   K+ISK+  REI
Sbjct: 646 DLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREI 705

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHFK+G CSC  YW
Sbjct: 706 IVRDANRFHHFKDGLCSCGDYW 727



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 4/248 (1%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           L C+ + Q +  G    DV  Q  +++  AKCG + +A+ +FD +  R  ++W ++++GY
Sbjct: 172 LSCIIHGQIIKYGF-GSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGY 230

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           AQ GK+ EAL +F  M+ + VK + +++VS+L A T +  L+QGR  H ++ +  L+   
Sbjct: 231 AQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEP 290

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            L  +L   Y+KCG +  A  FF  MK  NV  W ++I G A NG  E+++ LF  M   
Sbjct: 291 ALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISR 350

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLD 243
            ++P+ VT  S +     VG +E  +   D + +  YG + ++     L+D+Y + G ++
Sbjct: 351 NIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVN--TSLIDMYAKCGSVE 408

Query: 244 EALDVINK 251
            A  V ++
Sbjct: 409 FARRVFDR 416



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 2/241 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +++  +  G +  ARK+FDE    D   WNA++  Y++    R+ + ++  M+   V 
Sbjct: 92  TKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVH 151

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   VL ACT L         H  I +      V +   LV +Y+KCG++  A   
Sbjct: 152 PDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVV 211

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F G+  R + +WTS+I G A NG   ++L +FS M+  GV+P+ +  VS+LR    V  +
Sbjct: 212 FDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDL 271

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E+GR        + G+E        L   Y + G +  A    ++M    +   W A+++
Sbjct: 272 EQGRS-IHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMK-TTNVIMWNAMIS 329

Query: 267 A 267
            
Sbjct: 330 G 330



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 67/110 (60%), Gaps = 4/110 (3%)

Query: 3   AELGCLGYCQKVFDGIHEP----DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A++G L   Q + D + +     D+   T++I   AKCG V+ AR++FD   ++D + W+
Sbjct: 367 AQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWS 426

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           AM+ GY   G+  EA++L+H+M+   V  N+V+ + +L+AC H G + +G
Sbjct: 427 AMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEG 476



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 72  EALHLFHLMQIHDVKLNEVSM-VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            ALH  H +  HD   N  S   S++   TH   LDQ    H  +  + L+    L T L
Sbjct: 39  SALHPEHFVN-HDHCFNSDSFYASLIDNSTHKRHLDQ---IHNRLVISGLQHNGFLMTKL 94

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           V+  S  G +  A   F      +V+ W ++I   + N     ++E++  M+  GV P+ 
Sbjct: 95  VNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDG 154

Query: 191 VTFVSVLRGCCVVGLVEEGRE---HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
            TF  VL+ C    L++ G     H   ++  +G + ++++   LV LY + G +  A  
Sbjct: 155 FTFPYVLKAC--TELLDFGLSCIIHGQIIKYGFGSDVFVQN--GLVALYAKCGHIGVAKV 210

Query: 248 VINKM 252
           V + +
Sbjct: 211 VFDGL 215


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/469 (43%), Positives = 289/469 (61%), Gaps = 22/469 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCG-------DVDLARKMFDEMPERD 53
           MYAE GC  Y +KVFD + +P+VV   A+++AC +CG              +F EM  RD
Sbjct: 157 MYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRD 216

Query: 54  PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
             +W+ M+ G+A+ G   +A   F  +     + +EVS+  VLSAC   GA + G+  H 
Sbjct: 217 DASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHG 276

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
           ++E+      V++  AL+D YSKCGN++ A   F      N+         LAM+G  ++
Sbjct: 277 FMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVF------NI--------SLAMHGRADE 322

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           ++ +F  M+++GVRP+ VTF+S+L  C   GLVE+G   F  MR  YGIEP +EHYGC+V
Sbjct: 323 AIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMV 382

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           DLYGRA RL +A + I +MP+ P+   W  LL AC ++ N E+ EL   +L E++  N G
Sbjct: 383 DLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSG 442

Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
            +VLLSN+YA +  W  V  +R+ M  + +KK+PG S+IE+D+  + F AG++ +    E
Sbjct: 443 DHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKE 502

Query: 354 IEVMLGEISRRLK-LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPI 412
               L EI  RL+   GY      V++D+EEEEKED++ KHSEK+A AFG+  L +G  +
Sbjct: 503 AHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLPKGRIL 562

Query: 413 RIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RIVKNLRVC DCH V K+ISKV+  EIIVRDR+RFH FK G CSC+ YW
Sbjct: 563 RIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW 611


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/442 (42%), Positives = 276/442 (62%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D   Q ++IS   KCG+ DLAR+ F++M   E+   +W+A+LA Y + G+  E +  F  
Sbjct: 172 DEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGA 231

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M     + +E SMVS LSAC HLGA D GR  H  + RN  ++   + T+LVDMY+KCG 
Sbjct: 232 MVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGC 291

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M ++N +T+++++ GLA++G G K+LE+F  M + G RP+   +V VL  
Sbjct: 292 IENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNA 351

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+EEG   FD MR E+ + P  +HYGC+VDL  RAGRLD+A  +I  MP  P   
Sbjct: 352 CSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDT 411

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           AW +LLNACR++ N E+ E A ++L  L   N G Y++LS+++A + N D     R    
Sbjct: 412 AWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAV 471

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+ + PG S +EV    H F + D +HPR ++I  ML ++  +L+  GY  +T+ +  
Sbjct: 472 DRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSELAL 531

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D  EEEK   +  HS+K+A+AFGL+S  EG P+R+V NLR+  +CH  + +IS++F REI
Sbjct: 532 DAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREI 591

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRDRNRFH FK G CSC+ YW
Sbjct: 592 VVRDRNRFHRFKRGACSCRNYW 613



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L LF  M    V+ +  +   V  AC  LGAL +GR    ++ +   +       +L+  
Sbjct: 123 LRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISF 182

Query: 134 YSKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           Y KCG  + A   F  M+  E+   +W++++      G   + +E F  M +AG RP+E 
Sbjct: 183 YGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDES 242

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           + VS L  C  +G  + GR  H   +R    +  ++     LVD+Y + G ++ A  V +
Sbjct: 243 SMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMS--TSLVDMYAKCGCIENAAAVFD 300

Query: 251 KMPMK 255
            M  K
Sbjct: 301 AMDDK 305



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           L LF  M   GV P+  TF  V + C  +G ++EGR+       + G +        L+ 
Sbjct: 123 LRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQ-LQGHLVKLGFQRDEHSQNSLIS 181

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGA-WGALLNA 267
            YG+ G  D A     +M       A W ALL A
Sbjct: 182 FYGKCGEADLARRAFEQMEDDEQTTASWSALLAA 215



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 39/174 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+     VFD + + +    +AM+S                             
Sbjct: 285 MYAKCGCIENAAAVFDAMDDKNAWTYSAMVS----------------------------- 315

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             G A  G  R+AL +F  M     + +    V VL+AC+  G L++G       +R RL
Sbjct: 316 --GLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRC---FDRMRL 370

Query: 121 KMTVTLGTA----LVDMYSKCGNMNKAMDFFWGMKERNVYT-WTSVIGGLAMNG 169
           +  +T        +VD+ ++ G ++ A      M      T W S++    ++G
Sbjct: 371 EHKLTPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHG 424


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 287/445 (64%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E  +   ++++   AK G +  A  +F  +PERD +A  A+++GYAQ G   EAL LF 
Sbjct: 194 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 253

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +QI  +  N V+  SVL+A + L AL+ G+  H ++ R+     V L  +L+DMYSKCG
Sbjct: 254 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCG 313

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVL 197
           N+  A   F  M ER   +W +++ G + +G   + LELF LM++   V+P+ +T+++VL
Sbjct: 314 NVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVL 373

Query: 198 RGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
            GC    L + G E F +M   + GIEP + HYGC+VDL GRAGR++EA D I KMP  P
Sbjct: 374 SGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVP 433

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
            A  WG+LL +CR++ + E+G +  +KL+ELE +N G YV+LSN+YA +  W+ + N+R 
Sbjct: 434 TAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRD 493

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M+ K V K PG S +E+D+ VH F A D THPR  E+   + E+S + K  GYV + + 
Sbjct: 494 LMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSC 553

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+YD++EE+KE  L  HSEK+A+AFGLI+  EG  IR++KNLR+C DCH   K +S+++ 
Sbjct: 554 VLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYA 613

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R +I+RD+NRFH+   G CSC  YW
Sbjct: 614 RTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 130/245 (53%), Gaps = 2/245 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P V  +T +I    KC  +  AR MFDEMP+R+ ++W AM++ Y+Q G + EAL+LF  M
Sbjct: 95  PSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEM 154

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              D + N  +  ++L++C      + GR  H    +   +  + +G++L+DMY+K G +
Sbjct: 155 LRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRI 214

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  + ER+V   T++I G A  G  E++L+LF  ++  G+  N VT+ SVL   
Sbjct: 215 CDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTAL 274

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             +  +  G++    + R  G   ++     L+D+Y + G +  A  + + MP +    +
Sbjct: 275 SGLAALNHGKQVHSHVLRS-GQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERT-CIS 332

Query: 261 WGALL 265
           W A+L
Sbjct: 333 WNAML 337



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L+ C    A+ +G+  H ++ +     +V L T L+ +Y+KC  +  A   F  M +R
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQR 126

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           NV +WT++I   +  G   ++L LF  M ++   PN  TF ++L  C      E GR+ H
Sbjct: 127 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 186

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
             +++R Y  E  +     L+D+Y ++GR+ +A  V + +P
Sbjct: 187 SIAIKRNY--ESHMFVGSSLLDMYAKSGRICDAHGVFHCLP 225


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/452 (43%), Positives = 278/452 (61%), Gaps = 1/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q    G  E D+    A++S  A+CG    A   F+++  +D I+WNA+++G+AQ G 
Sbjct: 539 HAQSYISGYSE-DLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGH 597

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL +F  M    V+ N  +  S +SA  +   + QG+  H  + +            
Sbjct: 598 CEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNV 657

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ +YSKCG++  A   F+ M E+NV +W ++I G + +G G +++ LF  MKQ G+ PN
Sbjct: 658 LITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPN 717

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            VTFV VL  C  VGLV EG  +F SM +E+G+ P  EHY C+VDL GRA  L  A + I
Sbjct: 718 HVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFI 777

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            +MP++P A  W  LL+AC ++KN E+GE A+R L+ELE ++   YVLLSN+YA S  WD
Sbjct: 778 EEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWD 837

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
                RQ+MK +GVKK PG S IEV   +H FF GD  HP   +I   + +++ R    G
Sbjct: 838 YRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIG 897

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +   ++ D+E+E+K+ T   HSEK+A+AFGL+SL   +PIR++KNLRVC DCH+  K
Sbjct: 898 YVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIK 957

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            +SK+ NR I+VRD  RFHHF+ G CSCK YW
Sbjct: 958 FVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 136/264 (51%), Gaps = 3/264 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG   + Q +  G      VC + +I   AK G++D AR +   + E D ++W AM+AG
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVC-SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG 490

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y Q     EAL LF  M+   ++ + +   S +SAC  + AL+QG+  H     +     
Sbjct: 491 YTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSED 550

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           +++G ALV +Y++CG    A   F  +  ++  +W ++I G A +G  E++L++FS M Q
Sbjct: 551 LSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQ 610

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           AGV  N  TF S +        +++G++   +M  + G +   E    L+ LY + G ++
Sbjct: 611 AGVEANLFTFGSAVSATANTANIKQGKQ-IHAMMIKTGYDSETEASNVLITLYSKCGSIE 669

Query: 244 EALDVINKMPMKPHAGAWGALLNA 267
           +A     +MP K +  +W A++  
Sbjct: 670 DAKREFFEMPEK-NVVSWNAMITG 692



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++ + +++    KC D++ A + F      + + WN ML  Y Q G   E+  +F  MQ
Sbjct: 348 DLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQ 407

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           I  +  N+ +  S+L  CT LGALD G   H  + ++  +  V + + L+DMY+K G ++
Sbjct: 408 IEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELD 467

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A      ++E +V +WT++I G   +    ++L+LF  M+  G+R + + F S +  C 
Sbjct: 468 TARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACA 527

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  + +G++ H  S    Y  +  L     LV LY R GR  +A     K+  K +  +
Sbjct: 528 GIQALNQGQQIHAQSYISGYSED--LSIGNALVSLYARCGRAQDAYLAFEKIDAKDNI-S 584

Query: 261 WGALLNA 267
           W AL++ 
Sbjct: 585 WNALISG 591



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 131/237 (55%), Gaps = 4/237 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+     VC  A+++  ++ G++  A ++F +M  RD I++N++++G AQ G S  AL L
Sbjct: 243 GLSSETFVC-NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQL 301

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ+  +K + V++ S+LSAC  +GA  +G+  H Y+ +  +   + +  +L+D+Y K
Sbjct: 302 FEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK 361

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C ++  A ++F   +  NV  W  ++      G   +S  +F  M+  G+ PN+ T+ S+
Sbjct: 362 CFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSI 421

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           LR C  +G ++ G + H   ++  +    ++     L+D+Y + G LD A  ++ ++
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYV--CSVLIDMYAKHGELDTARGILQRL 476



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 2/229 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G     +VC   +I   +K G VDLA+ +F+ +  +D ++W AM++G +Q G+  EA+ L
Sbjct: 142 GFGSSPLVC-NPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILL 200

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M    V        SVLSACT +     G   H +I +  L     +  ALV +YS+
Sbjct: 201 FCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSR 260

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            GN+  A   F  M  R+  ++ S+I GLA  G  +++L+LF  M+   ++P+ VT  S+
Sbjct: 261 WGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASL 320

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           L  C  VG   +G++   S   + G+   L   G L+DLY +   ++ A
Sbjct: 321 LSACASVGAGYKGKQ-LHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETA 368



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 6/243 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++F    + + V  + +I      G+VD A K+FD++P  +   WN +++G      + +
Sbjct: 35  RIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQ 94

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ-GRWAHVYIERNRLKMTVTLGTALV 131
            L LF LM   +V  +E +  SVL AC+   A  Q     H  I  +    +  +   L+
Sbjct: 95  VLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLI 154

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           D+YSK G+++ A   F  +  ++  +W ++I GL+ NG  ++++ LF  M ++ V P   
Sbjct: 155 DLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPY 214

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVI 249
            F SVL  C  + L + G E       ++G+    E + C  LV LY R G L  A  + 
Sbjct: 215 VFSSVLSACTKIELFKLG-EQLHGFIVKWGLSS--ETFVCNALVTLYSRWGNLIAAEQIF 271

Query: 250 NKM 252
           +KM
Sbjct: 272 SKM 274



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 5/190 (2%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   ++ N  + + +   C + G+L   +  H  I ++       LG+ L+D+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F  +   NV  W  VI GL       + L LFSLM    V P+E TF SVLR 
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 200 CCVVGLVEEGRE--HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           C       +  E  H   +   +G  P +     L+DLY + G +D A  V  ++ +K  
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLV--CNPLIDLYSKNGHVDLAKLVFERLFLKDS 178

Query: 258 AGAWGALLNA 267
             +W A+++ 
Sbjct: 179 V-SWVAMISG 187


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/461 (41%), Positives = 289/461 (62%), Gaps = 11/461 (2%)

Query: 11  CQKVFDGIH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           C +V  GIH        E D   +TA++        VD A ++F EM  +D  AW  ML 
Sbjct: 238 CLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLT 297

Query: 63  GYAQCGK--SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           G++  G+   R   H   ++ I ++KL+ ++++ +LS+C+H GAL QGR  H    +   
Sbjct: 298 GFSS-GRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCF 356

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +G+A++DMY+ CGN+  A  FF+GM E++V  W ++I G  MNG G  +++LF  
Sbjct: 357 ANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQ 416

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK +G+ P+E TFVSVL  C   G+V EG + F  M +   + P L+HY C++D+ GRAG
Sbjct: 417 MKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAG 476

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +LD A   IN MP +P    +  LL ACR++ N ++G   S+K+ E+E  + G YVLLSN
Sbjct: 477 QLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSN 536

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA + NW+ V   R  +++K +KK PG S IE+++E++ F AG++ HP+Y +IE +L  
Sbjct: 537 MYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKG 596

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  ++K AGYV NTN ++ D+ ++ K+D L  HSEK+AIAFGL+  K    IRI KNLR 
Sbjct: 597 LILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRT 656

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  +K +SKVF R ++++D NRFH F++G CSC+ YW
Sbjct: 657 CDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 133/247 (53%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +     ++++A   CG +  A+++F   P ++ ++W  +++G A+     EA+ +F  M 
Sbjct: 55  NTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMI 114

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           + + K N V++ SVL A  +LG +   +  H +  R   +  V + TALVDMYSK G M 
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M ERNV TW +++ G + +G  E++++LF+LM++ G+  +  T +S++    
Sbjct: 175 VARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            VG ++ G   H   +R  Y  +  ++    L+D+Y     +D+A  V ++M +K  A A
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIK--TALMDIYVSHNCVDDAHRVFSEMSVKDVA-A 291

Query: 261 WGALLNA 267
           W  +L  
Sbjct: 292 WTLMLTG 298



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 133/250 (53%), Gaps = 8/250 (3%)

Query: 2   YAELGCLGYCQKV----FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           +A LG +   + V      G  E +V  +TA++   +K G + +AR++F+ M ER+ + W
Sbjct: 132 FANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTW 191

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           NA+++GY+  G S EA+ LF+LM+   + ++  +++S++ A   +G L  G   H +I R
Sbjct: 192 NAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR 251

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
              +    + TAL+D+Y     ++ A   F  M  ++V  WT ++ G +     +++++ 
Sbjct: 252 TGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKH 311

Query: 178 FS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDL 235
           F+ ++    ++ + +  + +L  C   G +++GR  H  +++  +    ++     ++D+
Sbjct: 312 FNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVG--SAVIDM 369

Query: 236 YGRAGRLDEA 245
           Y   G L++A
Sbjct: 370 YANCGNLEDA 379



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 7/175 (4%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L     L  L Q    H  I  + L     L  +L++ Y  CG +  A   F     +
Sbjct: 29  SILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYK 85

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           NV +WT +I GLA N    +++++F  M     +PN VT  SVL     +GL+   +  H
Sbjct: 86  NVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVH 145

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              +R  +    ++E    LVD+Y + G +  A  +   M  + +   W A+++ 
Sbjct: 146 CFWVRGGFEGNVFVE--TALVDMYSKFGCMGVARQLFESMSER-NVVTWNAIVSG 197


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/440 (41%), Positives = 283/440 (64%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++     ++   +K G+++ A ++F+ M ER  ++W +M+AGYA+ G S  ++ LFH M+
Sbjct: 258 ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME 317

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D+  N ++M  +L AC  L AL++G+  H +I RN   +   +  ALVDMY KCG + 
Sbjct: 318 KEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALG 377

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + E+++ +WT +I G  M+G G +++  F+ M+ +G+ P+EV+F+S+L  C 
Sbjct: 378 LARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 437

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL++EG   F+ MR    IEP  EHY C+VDL  RAG L +A   I  MP++P A  W
Sbjct: 438 HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIW 497

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL  CR+Y + ++ E  +  + ELE +N G YVLL+NIYAE++ W+ V  +R+ +  +
Sbjct: 498 GALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRR 557

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K PGCS IE+  +VH F  GD +HP  N+IE++L +   R+K  G+       +   
Sbjct: 558 GLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKA 617

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           ++ EKE  LC HSEK+A+AFG++SL  G  +R+ KNLRVC DCH++ K +SK+  R+II+
Sbjct: 618 DDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIIL 677

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHFK+G CSC+G+W
Sbjct: 678 RDSNRFHHFKDGSCSCRGHW 697



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 131/274 (47%), Gaps = 48/274 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGD------------------VDLA 42
           MY   G L   +++FD +    V     +++  AK G+                  V+ A
Sbjct: 145 MYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESA 204

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           RK+FDE+ +RD I+WN+M++GY   G S + L LF  M +  +  +  +MVSV       
Sbjct: 205 RKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV------- 257

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
                                +TL   L+DMYSK GN+N A+  F  M ER+V +WTS+I
Sbjct: 258 --------------------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMI 297

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYG 221
            G A  G  + S+ LF  M++  + PN +T   +L  C  +  +E G+E H   +R  + 
Sbjct: 298 AGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFS 357

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           ++  + +   LVD+Y + G L  A  + + +P K
Sbjct: 358 LDRHVAN--ALVDMYLKCGALGLARLLFDMIPEK 389



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 29/257 (11%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           +N  +  + + G  R A+ L +     D++L   +  SVL  C  L ++  GR  H  I+
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
            N +++   LG+ LV MY  CG++ +    F  +    V+ W  ++ G A  G   +SL 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 177 LFSLMKQAGVRPNE--------------VTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222
           LF  M++ G+R  E              +++ S++ G    GL E+G + F+ M    GI
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLL-LGI 247

Query: 223 EPWLEHY--------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274
              L            CL+D+Y ++G L+ A+ V   M  +    +W +++     Y   
Sbjct: 248 NTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERS-VVSWTSMIAG---YARE 303

Query: 275 EMGELASRKLVELETKN 291
            + +++ R   E+E ++
Sbjct: 304 GLSDMSVRLFHEMEKED 320


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/443 (42%), Positives = 287/443 (64%), Gaps = 1/443 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ +V    A++   A+C  ++ A+ +FD M  ++ ++WNA++AGYA+ G+  +A  LF 
Sbjct: 149 YDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFS 208

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M   +VK    +  SVL AC  +G+L+QG+W H  + +   K+   +G  L+DMY+K G
Sbjct: 209 NMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSG 268

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  + +R+V +W S++ G + +G G+ +L+ F  M +  + PN++TF+ VL 
Sbjct: 269 SIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLT 328

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL++EGR +FD M++ Y +EP + HY  +VDL GRAG LD A+  I++MP+KP A
Sbjct: 329 ACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTA 387

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL ACRM+KN E+G  A+  + EL++   G +VLL NIYA +  W+    VR++M
Sbjct: 388 AVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMM 447

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K  GVKK P CS +E++ EVH F A D+ HP+  EI  M  +IS ++K  GYV +++ V+
Sbjct: 448 KESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVL 507

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++++E+E  L  HSEK+A+AF L++   G  IRI KN+R+C DCH   K +SK+  RE
Sbjct: 508 LCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVERE 567

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHF +G CSC+ YW
Sbjct: 568 IIVRDTNRFHHFCDGACSCEDYW 590



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 151/269 (56%), Gaps = 9/269 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+V Q  +++  AKCGD+  ARK+FDEM  RD + W A++ GY+Q  + ++AL L   M 
Sbjct: 49  DLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEML 108

Query: 82  IHDVKLNEVSMVSVLSACTHLGALD--QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
              +K N+ ++ S+L A + +G+ D  QGR  H    R      V +  A++DMY++C +
Sbjct: 109 RIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHH 168

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  M  +N  +W ++I G A  G G+K+  LFS M +  V+P   T+ SVL  
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +G +E+G+    ++  ++G E  +   G  L+D+Y ++G +++A  V +++  K   
Sbjct: 229 CASMGSLEQGK-WVHALMIKWG-EKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDV 285

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVEL 287
            +W ++L     Y    +G++A ++  E+
Sbjct: 286 VSWNSMLTG---YSQHGLGKVALQRFEEM 311



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++L  CTHL  L++G+  H  +  +R +  + +   L+++Y+KCG++  A   F  M  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE--EGRE 211
           +V TWT++I G + +   + +L L   M + G++PN+ T  S+L+    VG  +  +GR+
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               +   YG +  +     ++D+Y R   L+EA  + + M  K    +W AL+
Sbjct: 140 -LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEV-SWNALI 191



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 36/178 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + DVV                               +WN+M
Sbjct: 263 MYAKSGSIEDAKKVFDRLAKRDVV-------------------------------SWNSM 291

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L GY+Q G  + AL  F  M    +  N+++ + VL+AC+H G LD+GR     +++  +
Sbjct: 292 LTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNV 351

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLEL 177
           +  ++    +VD+  + G++++A+ F   M  +     W +++G   M+    K++EL
Sbjct: 352 EPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMH----KNMEL 405


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 275/440 (62%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    ++IS   KC +VD A  MF ++  R  ++WNAM+ G+AQ G+  +AL+ F  M+
Sbjct: 371 NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMR 430

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK +  + VSV++A   L      +W H  + R+ L   V + TALVDMY+KCG + 
Sbjct: 431 SRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIM 490

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M ER+V TW ++I G   +G G+ +LELF  M++  ++PN VTF+SV+  C 
Sbjct: 491 IARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVE G + F  M+  Y IE  ++HYG +VDL GRAGRL+EA D I +MP+KP    +
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GA+L AC+++KN    E A+ +L EL   + G +VLL+NIY  +  W++V  VR  M  +
Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K PGCS++E+  EVH FF+G   HP   +I   L ++   +K AGYV +TN V+  +
Sbjct: 671 GLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GV 729

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           E + KE  L  HSEK+AI+FGL++   G  I + KNLRVC DCH+ TK IS V  REI+V
Sbjct: 730 ENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVV 789

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK G CSC  YW
Sbjct: 790 RDMQRFHHFKNGACSCGDYW 809



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 135/244 (55%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   T + +  AKC  V+ ARK+FD MPERD ++WN ++AGY+Q G +R AL +   M 
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++K + +++VSVL A + L  +  G+  H Y  R+     V + TALVDMY+KCG++ 
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F GM ERNV +W S+I     N   ++++ +F  M   GV+P +V+ +  L  C 
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +E GR     +  E G++  +     L+ +Y +   +D A  +  K+  +    +W
Sbjct: 349 DLGDLERGR-FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLV-SW 406

Query: 262 GALL 265
            A++
Sbjct: 407 NAMI 410



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 133/260 (51%), Gaps = 9/260 (3%)

Query: 9   GYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           GY  +  FD +    V   TA++   AKCG ++ AR++FD M ER+ ++WN+M+  Y Q 
Sbjct: 260 GYAMRSGFDSL----VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
              +EA+ +F  M    VK  +VS++  L AC  LG L++GR+ H       L   V++ 
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            +L+ MY KC  ++ A   F  ++ R + +W ++I G A NG    +L  FS M+   V+
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435

Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P+  T+VSV+     + +    +  H   MR       ++     LVD+Y + G +  A 
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVT--TALVDMYAKCGAIMIAR 493

Query: 247 DVINKMPMKPHAGAWGALLN 266
            + + M  + H   W A+++
Sbjct: 494 LIFDMMSER-HVTTWNAMID 512



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 135/262 (51%), Gaps = 4/262 (1%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT ++S   + G VD A ++F+ +  +  + ++ ML G+A+     +AL  F  M+  DV
Sbjct: 72  QTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV 131

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           +    +   +L  C     L  G+  H  + ++   + +   T L +MY+KC  +N+A  
Sbjct: 132 EPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARK 191

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++ +W +++ G + NG    +LE+   M +  ++P+ +T VSVL     + L
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRL 251

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  G+E H  +MR   G +  +     LVD+Y + G L+ A  + + M ++ +  +W ++
Sbjct: 252 ISVGKEIHGYAMRS--GFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSM 308

Query: 265 LNACRMYKNTEMGELASRKLVE 286
           ++A    +N +   L  +K+++
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLD 330



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +V   TA++   AKCG + +AR +FD M ER    WNAM+ GY   G  + AL LF  
Sbjct: 470 DKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEE 529

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ   +K N V+ +SV+SAC+H G ++ G +  ++  E   +++++    A+VD+  + G
Sbjct: 530 MQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAG 589

Query: 139 NMNKAMDFFWGMKER---NVY 156
            +N+A DF   M  +   NVY
Sbjct: 590 RLNEAWDFIMQMPVKPAVNVY 610


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/450 (42%), Positives = 293/450 (65%), Gaps = 1/450 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +VF    E DV  Q ++I+   +CG+++L+  +F+++  +   +W++M++  A  G   E
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216

Query: 73  ALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
            L LF  M    ++K  E  MVS L AC + GAL+ G   H ++ RN  ++ + + T+LV
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DMY KCG ++KA+  F  M++RN  T++++I GLA++G GE +L +FS M + G+ P+ V
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            +VSVL  C   GLV+EGR  F  M +E  +EP  EHYGCLVDL GRAG L+EAL+ I  
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 396

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           +P++ +   W   L+ CR+ +N E+G++A+++L++L + N G Y+L+SN+Y++ + WD V
Sbjct: 397 IPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDV 456

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
              R  +  KG+K+ PG S++E+  + H F + D +HP+  EI  ML ++  +LK  GY 
Sbjct: 457 ARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +   ++ +++EEEK++ L  HS+KVAIAFGL+    G  I+I +NLR+C DCH  TK I
Sbjct: 517 PDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKI 576

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           S ++ REI+VRDRNRFH FK G CSCK YW
Sbjct: 577 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 7/282 (2%)

Query: 29  MISACAKCG---DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +++ CA  G    ++ A  +F  + +     +N M+ GY       EAL  ++ M     
Sbjct: 69  VLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGN 128

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + +  +   +L ACT L ++ +G+  H  + +  L+  V +  +L++MY +CG M  +  
Sbjct: 129 EPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSA 188

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVG 204
            F  ++ +   +W+S++   A  G   + L LF  M  +  ++  E   VS L  C   G
Sbjct: 189 VFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTG 248

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
            +  G      + R    E  +     LVD+Y + G LD+AL +  KM  K +   + A+
Sbjct: 249 ALNLGMSIHGFLLRNIS-ELNIIVQTSLVDMYVKCGCLDKALHIFQKME-KRNNLTYSAM 306

Query: 265 LNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAES 305
           ++   ++   E    + S+ + E    +H  YV + N  + S
Sbjct: 307 ISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHS 348


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/459 (41%), Positives = 286/459 (62%), Gaps = 3/459 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y +   +G  +++FD +   D V   + +SA  +    D AR +F+ MP  D ++W  +
Sbjct: 462 LYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTI 521

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT-HLGALDQGRWAHVYIERNR 119
           ++  AQ  +  EA+ +F  M +H+ +L    ++++L   + +LGA   G+  H    +  
Sbjct: 522 ISACAQADQGNEAVEIFRSM-LHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLG 580

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +   + +  ALV MY KC + + ++  F  M+ER+++TW ++I G A +G G +++ ++ 
Sbjct: 581 MDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQ 639

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           LM  AGV PNEVTFV +L  C   GLV+EG + F SM  +YG+ P LEHY C+VDL GRA
Sbjct: 640 LMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRA 699

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G +  A   I  MP++P +  W ALL AC+++KN E+G  A+ KL  +E  N G YV+LS
Sbjct: 700 GDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLS 759

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIY+    WD V  VR++MK +GV K PGCS +++  ++H F  GDE H +   I   L 
Sbjct: 760 NIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLW 819

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   LK  GYV +T+ V++DI+EE+KE +L  HSEK+A+A+GL+   +G+PI+I+KNLR
Sbjct: 820 ELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLR 879

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCK 458
           +C DCH   K +S V  REI VRD NRFHHF+ G CSC+
Sbjct: 880 ICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSCE 918



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 139/296 (46%), Gaps = 42/296 (14%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G +   ++VFDG+   + V   AM++   + GD+ LARK+FD MP RD  +WN ML
Sbjct: 105 YARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTML 164

Query: 62  AGYAQCGKSREALHLFHLMQIHD-------------------------------VKLNEV 90
            GY       EA +LF  M   +                               +   + 
Sbjct: 165 TGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQP 224

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM-NKAMDFFWG 149
           ++VSVLSA  HLG        HV + +   +  V +GTA+++ Y+K  NM + A+ FF G
Sbjct: 225 NLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEG 284

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M  RN YTW+++I  L+  G  + +  ++       V P+     S+L G    G +++ 
Sbjct: 285 MAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSR---TSMLTGLARYGRIDDA 340

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +  FD +      EP +  +  ++  Y +   +DEA D+ N+MP + +  +W  ++
Sbjct: 341 KILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFR-NTISWAGMI 390



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           A  G +   + +FD IHEP+VV   AMI+   +   VD A  +F+ MP R+ I+W  M+A
Sbjct: 332 ARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIA 391

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           GYA+ G+S +AL     +    +  +  S+ S   AC+++ AL+ G+  H    +   + 
Sbjct: 392 GYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQF 451

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
              +  AL+ +Y K  ++      F  M  ++  ++ S +  L  N   +++ ++F+ M 
Sbjct: 452 NSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP 511

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM--RREYGIEPWLEHYGCLVDLYGRAG 240
                P+ V++ +++  C       E  E F SM   RE    P L     L+ L G  G
Sbjct: 512 S----PDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILT---ILLGLSGNLG 564



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 94/238 (39%), Gaps = 44/238 (18%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P    Q+A I    + G +  AR++FD MP RD IAWN+M+  Y                
Sbjct: 31  PGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAY---------------- 74

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                             C + G  D GR     I    L+     GT L+  Y++ G +
Sbjct: 75  ------------------CNN-GMPDAGRSLADAISGGNLRT----GTILLSGYARAGRV 111

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F GM  RN   W +++     NG    + +LF  M    V     ++ ++L G 
Sbjct: 112 RDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVS----SWNTMLTGY 167

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPH 257
           C   L+EE R  F+ M    G+   +   G  L++ +GRA  +   +      P +P+
Sbjct: 168 CHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPN 225



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 22/247 (8%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           D I   ++   T ++S  A+ G V  AR++FD M  R+ +AWNAM+  Y Q G    A  
Sbjct: 88  DAISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARK 147

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTL-GTALVDM 133
           LF  M   DV     S  ++L+   H   +++ R     + ERN +  TV + G  L++ 
Sbjct: 148 LFDAMPSRDVS----SWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQ 203

Query: 134 YSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           + +  +M + M    GM  ++ N+ +  S +  L   G  E    +  L+ + G   + V
Sbjct: 204 HGRAWDMFRTM-LCEGMTPEQPNLVSVLSAVRHLGKPGILES---IHVLVHKTGFERDVV 259

Query: 192 TFVSVLRGCCV-VGLVEEGREHFDSM--RREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
              ++L G    V +++   + F+ M  R EY        +  ++    +AGR+D+A  V
Sbjct: 260 VGTAILNGYTKDVNMLDSAVKFFEGMAARNEYT-------WSTIIAALSQAGRIDDAFAV 312

Query: 249 INKMPMK 255
             + P+K
Sbjct: 313 YQRDPLK 319


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 282/436 (64%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++ A  K G+V  + ++F  +P +D +AW+AML G AQ   S +A+ +F  +    VK
Sbjct: 443 TALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVK 502

Query: 87  LNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            NE +  SV++AC+   A ++ G+  H    ++     + + +AL+ MYSK GN+  A  
Sbjct: 503 PNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEK 562

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F   +ER++ +W S+I G   +G  +K+LE+F +M+  G+  ++VTF+ VL  C   GL
Sbjct: 563 VFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGL 622

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           VEEG ++F+ M ++Y I+  +EHY C+VDLY RAG  D+A+D+IN MP       W  LL
Sbjct: 623 VEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLL 682

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR+++N E+G+LA+ KLV L+  +   YVLLSNI+A + NW+   +VR++M  + VKK
Sbjct: 683 AACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKK 742

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
             GCS IE+   +  F AGD +HP  + +   L E+S +LK  GY  +TN V +D+EEE 
Sbjct: 743 EAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEH 802

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L +HSE++AIA+GLI+L  G PI+I KNLR+C DCH+V ++IS +  R +IVRD N
Sbjct: 803 KEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSN 862

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK G CSC GYW
Sbjct: 863 RFHHFKGGVCSCGGYW 878



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 24/277 (8%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ +  G  E DV   T+++    K  D +  R +FDEM  ++ ++W ++L+GYA+ G 
Sbjct: 127 HCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + E +HL + MQ+  V  N  +  +VL A      ++ G   H  I +N  + T  +  A
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNA 245

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ MY K   +  A   F  M  R+  TW  +IGG A  G   +  ++F  M+ AGV+ +
Sbjct: 246 LICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLS 305

Query: 190 EVTFVSVLRGCCV-----------VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
              F + L+ C              G+V+ G E    +R              L+  Y +
Sbjct: 306 RTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT------------ALMVTYSK 353

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
              +DEA  + +      +   W A++       N E
Sbjct: 354 CSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNE 390



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 26  QTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           +TA++   +KC  VD A K+F       + + W AM+ G+ Q   + +A+ LF  M    
Sbjct: 344 RTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREG 403

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V+ N  +  +VL A      L Q    H  I +   +   ++ TAL+D Y K GN+ ++ 
Sbjct: 404 VRPNHFTYSTVL-AGKPSSLLSQ---LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F+ +  +++  W++++ GLA     EK++E+F  + + GV+PNE TF SV+  C    
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
              E  +   +   + G    L     L+ +Y + G ++ A  V  +
Sbjct: 520 ATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTR 566



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A ++FDE P +D   +N +L  +++    REALHLF  +    + ++ +++   L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L     GR  H    ++     V++GT+LVDMY K  +       F  M  +NV +WTS+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           + G A NG  ++ + L + M+  GV PN  TF +VL       ++E G +   +M  + G
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ-VHAMIVKNG 235

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            E        L+ +Y ++  + +A  V + M ++
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVR 269


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/456 (42%), Positives = 286/456 (62%), Gaps = 3/456 (0%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCG--DVDLARKMFDEMPERDPIAWNAMLAGYA 65
           L  C+++ D   +PD     +++ A A     +V    K+F  +  ++ I+WN M+  Y 
Sbjct: 205 LEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYM 264

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           +     +A+ L+  M+   V+ + ++  SVL AC  L AL  GR  H Y+E+ +L   + 
Sbjct: 265 KNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLL 324

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L  +L+DMY++CG ++ A   F  MK R+V +WTS+I    M G G  ++ LF+ M  +G
Sbjct: 325 LENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSG 384

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
             P+ + FV++L  C   GL++EGR +F  M  +Y I P +EHY CLVDL GRAGR+DEA
Sbjct: 385 QAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEA 444

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
            ++I +MP++P+   W  LL++CR++ N ++G LA+  L++L  +  G YVLLSNIYA++
Sbjct: 445 YNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKA 504

Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
             W  V  +R +MK K ++K PG S +E++ +VH F AGD +HP+  EI   LG +  ++
Sbjct: 505 GRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKM 564

Query: 366 KLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
           K  GYV  T+  ++D+EEE+KE  L  HSEK+AI F L++ +E   IRI KNLRVC DCH
Sbjct: 565 KELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVCGDCH 623

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              K+ISK+  REIIVRD NRFHHFK+G CSC  YW
Sbjct: 624 IAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 16/271 (5%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++ + A CG+  L RK+FDEM +R+ + +N M+  Y    +  + L +F  M     + +
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             +   VL AC+    L  G   H  + +  L   + +G  L+ MY KCG + +A   F 
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC------- 201
            M  ++V +W S++ G A N   + +LE+   M+  G +P+  T  S++           
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238

Query: 202 ------VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
                  V L  +    ++ M R Y            VDLY +  +     D I    + 
Sbjct: 239 LYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQ---AVDLYLQMEKCRVEPDAITFASVL 295

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           P  G   ALL   R+++  E  +L    L+E
Sbjct: 296 PACGDLSALLLGRRIHEYVEKKKLCPNLLLE 326



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 70/257 (27%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  GCL   ++VFD +   DV   T++ISA                            
Sbjct: 332 MYARCGCLDDAKRVFDRMKFRDVASWTSLISA---------------------------- 363

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNR 119
              Y   G+   A+ LF  M       + ++ V++LSAC+H G LD+GR +     +  R
Sbjct: 364 ---YGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYR 420

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +   +     LVD+  + G +++A                                  ++
Sbjct: 421 ITPRIEHYACLVDLLGRAGRVDEA----------------------------------YN 446

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGR 238
           ++KQ  + PNE  + ++L  C V   ++ G    D++ +   + P    +Y  L ++Y +
Sbjct: 447 IIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQ---LAPEQSGYYVLLSNIYAK 503

Query: 239 AGRLDEALDVINKMPMK 255
           AGR  E  ++ + M  K
Sbjct: 504 AGRWKEVTEIRSVMKRK 520



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
           +LG  L+  Y+ CG        F  M +RNV  +  +I     N   +  L +F  M   
Sbjct: 54  SLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNG 113

Query: 185 GVRPNEVTFVSVLRGC-CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           G RP+  T+  VL+ C C   L      H D ++   G++  L     L+ +YG+ G L 
Sbjct: 114 GFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLK--VGLDFNLFVGNGLIAMYGKCGCLF 171

Query: 244 EALDVINKMPMKPHAGAWGALL 265
           EA  V ++M  K    +W +++
Sbjct: 172 EARRVFDEMIWK-DVVSWNSMV 192


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/452 (43%), Positives = 279/452 (61%), Gaps = 3/452 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFD---EMPERDPIAWNAMLAGYAQCGK 69
           +V   + E D     +++    KCG+++ A  +FD   +  E    AW+ M+AGY Q G+
Sbjct: 283 RVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGR 342

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL  F  M    V   +  + SV SAC + G ++QGR  H ++E+   +    L +A
Sbjct: 343 EEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASA 402

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           +VDMYSK G++  A   F   + +NV  WT+++   A +G G  +LE+FS MK   + PN
Sbjct: 403 IVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPN 462

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+T V+VL  C   GLV +G  +F+ M+ EYGI P  EHY C+VDLYGRAG LD+A + I
Sbjct: 463 EITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFI 522

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            +  +   A  W  LL+ACR++K+ E  +LAS KLV+LE  + G+YVL+SN+YA +  W 
Sbjct: 523 EENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWL 582

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
               +R  MK + V+K PG S I +   VH F A D +HPR  EI   L ++  RLK  G
Sbjct: 583 DTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMG 642

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           Y + T+ V++DIEEE++E +L  HSEK+AIAFG+IS   G  +RI KNLRVC DCH+  K
Sbjct: 643 YTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIK 702

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            I++  +REI+VRD  RFHHFK+G+CSC+ +W
Sbjct: 703 FITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 17/274 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G  G  ++ F  + + D      +I AC + GD+  A ++FDE   RD  +WN +
Sbjct: 170 MYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTI 229

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G  + G + EAL     M    V  +  +   V +    L + D GR  H  +    L
Sbjct: 230 VSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVL 289

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF--WG-MKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           +    +G +L+DMY KCG M  A+  F  W    E   + W++++ G   NG  E++LE 
Sbjct: 290 EEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEF 349

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH------YGC 231
           F  M + GV   +    SV   C   G+VE+GR+        +G    L H         
Sbjct: 350 FRRMLREGVPAGQFILTSVASACANAGMVEQGRQ-------VHGFVEKLGHRFDAPLASA 402

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +VD+Y ++G L++A  +      K +   W  +L
Sbjct: 403 IVDMYSKSGSLEDACRIFRSAQTK-NVALWTTML 435



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 36/244 (14%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM--QIHDVKLNEVSMVSVLSAC 99
           A ++FD  P R   AW ++++G A+ G+  + +  F  M  +      N   +  VL  C
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE------- 152
             LG ++ GR  H +I R+ +   V L  A++DMY+KCG+  +A   F  M +       
Sbjct: 137 AGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 153 ------------------------RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
                                   R+V +W +++ GL  +G   ++L     M +AGV  
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTF 256

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALD 247
           +  T+  V     ++   + GR+     R    +       GC L+D+Y + G ++ AL 
Sbjct: 257 SNYTYSMVFALAGLLSSRDLGRQLHG--RVVVAVLEEDAFVGCSLMDMYCKCGEMESALS 314

Query: 248 VINK 251
           + ++
Sbjct: 315 IFDR 318



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 4/131 (3%)

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ--AGVRPNEVTFVSVL 197
           ++ A   F G   R++  WTS+I G A  G     +  F+ M        PN      VL
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           R C  +G VE GR     + R  G+ P +     ++D+Y + G    A      M  K  
Sbjct: 134 RCCAGLGDVESGRRIHGWILRS-GVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKD- 191

Query: 258 AGAWGALLNAC 268
           A +W  ++ AC
Sbjct: 192 ATSWNIVIRAC 202


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/461 (41%), Positives = 288/461 (62%), Gaps = 11/461 (2%)

Query: 11  CQKVFDGIH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           C +V  GIH        E D   +TA++        VD A ++F EM  +D  AW  ML 
Sbjct: 238 CLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLT 297

Query: 63  GYAQCGK--SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           G++  G+   R   H   ++ I ++KL+ + ++ +LS+C+H GAL QGR  H    +   
Sbjct: 298 GFSS-GRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCF 356

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +G+A++DMY+ CGN+  A  FF+GM E++V  W ++I G  MNG G  +++LF  
Sbjct: 357 ANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQ 416

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MK +G+ P+E TFVSVL  C   G+V EG + F  M +     P L+HY C++D+ GRAG
Sbjct: 417 MKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAG 476

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +LD A   IN MP +P    +  LL ACR++ N ++G   S+K+ E+E  + G YVLLSN
Sbjct: 477 QLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSN 536

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA + NW+ V   R  +++K +KK PG S IE+++E++ F AG++ HP+Y +IE +L  
Sbjct: 537 MYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKG 596

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  ++K AGYV NTN ++ D+ ++ K+D L  HSEK+AIAFGL+  K G  IRI KNLR 
Sbjct: 597 LILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRT 656

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH  +K +SKVF R ++++D NRFH F++G CSC+ YW
Sbjct: 657 CNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 133/247 (53%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +     ++++A   CG +  A+++F   P ++ ++W  +++G A+     EA+ +F  M 
Sbjct: 55  NTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMT 114

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           + + K N V++ SVL A  +LG +   +  H +  R   +  V + TALVDMYSK G M 
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M ERNV +W +++ G + +G  E++++LF+LM++ G+  +  T +S++    
Sbjct: 175 VARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            VG ++ G   H   +R  Y  +  ++    L+D+Y     +D+A  V ++M +K  A A
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIK--TALMDIYVSHNCVDDAHRVFSEMFVKDVA-A 291

Query: 261 WGALLNA 267
           W  +L  
Sbjct: 292 WTLMLTG 298



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 134/250 (53%), Gaps = 8/250 (3%)

Query: 2   YAELGCLGYCQKV----FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           +A LG +   + V      G  E +V  +TA++   +K G + +AR++F+ M ER+ ++W
Sbjct: 132 FANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSW 191

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           NA+++GY+  G S EA+ LF+LM+   + ++  +++S++ A   +G L  G   H +I R
Sbjct: 192 NAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR 251

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
              +    + TAL+D+Y     ++ A   F  M  ++V  WT ++ G +     +++++ 
Sbjct: 252 TGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKH 311

Query: 178 FS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDL 235
           F+ ++    ++ + +  + +L  C   G +++GR  H  +++  +    ++     ++D+
Sbjct: 312 FNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVG--SAVIDM 369

Query: 236 YGRAGRLDEA 245
           Y   G L++A
Sbjct: 370 YANCGNLEDA 379



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           S  S+L     L  L Q    H  I  + L     L  +L++ Y  CG +  A   F   
Sbjct: 26  SHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHT 82

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
             +NV +WT +I GLA N    +++++F  M     +PN VT  SVL     +GL+   +
Sbjct: 83  PCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAK 142

Query: 211 E-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             H   +R  +    ++E    LVD+Y + G +  A  +   M  + +  +W A+++ 
Sbjct: 143 SVHCFWVRGGFEGNVFVE--TALVDMYSKFGCMGVARQLFESMSER-NVVSWNAIVSG 197


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/467 (42%), Positives = 288/467 (61%), Gaps = 7/467 (1%)

Query: 1   MYAELGC---LGYCQKVFDGIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA 56
           M A L C   +G  + +F    E  D +  TAM+S     G+V  A + F  MP R+ ++
Sbjct: 145 MVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVS 204

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           WNA++AGY +  ++ +AL +F  M + D  V+ N  ++ SVL  C++L AL  GR  H +
Sbjct: 205 WNAVVAGYVKNSRADDALRVFKTM-VEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQW 263

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
             +  L   VT+GT+L+ MY KCG++N A   F  M  +++  W ++I G A +G G ++
Sbjct: 264 CMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQA 323

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           ++LF  MK  GV P+ +T ++VL  C   GL + G + F++M+  Y IEP ++HY C+VD
Sbjct: 324 IKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVD 383

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           L  RAG L+ A+++I+ MP +PH  A+G LL ACR+YKN E  E A+RKL+E + +N GA
Sbjct: 384 LLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGA 443

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEI 354
           YV L+NIYA +  W  V  VR+ MK   V K PG S +E+    HEF + D  HP+   I
Sbjct: 444 YVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLI 503

Query: 355 EVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
              L  +   +K  GYV + +  ++D+E+  K   L +HSEK+AIAFGLIS   G+ +RI
Sbjct: 504 HDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRI 563

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            KNLR+C DCH+  K+ISK+ +REII+RD  RFHHF+ G CSC  YW
Sbjct: 564 FKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 139/262 (53%), Gaps = 14/262 (5%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           L   +++FD I  PD V    ++S    CGD+D AR++F  MP +D  +WN M++G ++ 
Sbjct: 62  LADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKN 121

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTL 126
           G S EA  +F +M + +  ++  +MV+ L+    +GA +        + RN  + T   L
Sbjct: 122 GASEEAAAMFRIMPVRNA-VSWNAMVAALACSGDMGAAED-------LFRNAPEKTDAIL 173

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAG 185
            TA+V  Y   GN+ KAM+FF  M  RN+ +W +V+ G   N   + +L +F ++++ + 
Sbjct: 174 WTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSI 233

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           V+PN  T  SVL GC  +  +  GR+ H   M+        +     L+ +Y + G L++
Sbjct: 234 VQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRN--VTVGTSLLSMYCKCGDLND 291

Query: 245 ALDVINKMPMKPHAGAWGALLN 266
           A  V ++M  K    AW A+++
Sbjct: 292 ACKVFDEMSTKDIV-AWNAMIS 312


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 279/475 (58%), Gaps = 15/475 (3%)

Query: 1   MYAELGCLGYCQKVFD--------------GIHEPDVVCQTAMISACAKCGDVDLARKMF 46
           MY  +  LG C  +FD               + + + VC TA+I   AKC  ++ A   F
Sbjct: 516 MYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMYAKCMYLEDADVAF 574

Query: 47  DEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD 106
           + +  RD   W  ++  YAQ  +  +AL+ F  MQ   VK NE ++   LS C+ L +L+
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
            G+  H  + ++     + +G+ALVDMY+KCG M +A   F  +  R+   W ++I G A
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG G K+L  F +M   G+ P+ VTF  +L  C   GLVEEG+EHF+SM R++GI P +
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           +H  C+VD+ GR G+ DE  D I KM +  +A  W  +L A +M+ N  +GE A+ KL E
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE 346
           L+ +   +Y+LLSNI+A    WD V  VR +M +KGVKK PGCS +E + +VH F + D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 347 THPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISL 406
           +HP+  EI + L E+ R L    YV  T  V++++ E EK++ L  HSE++A+ F LIS 
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 407 KEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
                IRI KNLR+C DCHDV K IS + N+EI+VRD  RFHHFK G CSC  +W
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 5/253 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   +A++   AKCG+++LA KMF  MPE++ + WN +L GYAQ G     L LF  M 
Sbjct: 247 DLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMM 306

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             DVK NE ++ +VL  C +   L QG+  H  I +   +    +G  LVDMYSKCG   
Sbjct: 307 ELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI 366

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  +K+ ++  W+++I  L   G  E+S++LF LM+     PN+ T  S+L    
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G ++ G+    +   +YG E  +     LV +Y + G + +   +   M +     +W
Sbjct: 427 NTGNLQYGQS-IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISW 484

Query: 262 GALLNA---CRMY 271
            A L+    C MY
Sbjct: 485 NAYLSGLHDCGMY 497



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 2/246 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    A+++   K G V    K+++ M +RD I+WNA L+G   CG     L +F+ 
Sbjct: 447 ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYH 506

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M       N  + +S+L +C+ L  +  GR  H +I +N+L     + TAL+DMY+KC  
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  +  R+++TWT +I   A    GEK+L  F  M+Q GV+PNE T    L G
Sbjct: 567 LEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSG 626

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  +E G++   SM  + G    +     LVD+Y + G ++EA + + +  ++    
Sbjct: 627 CSSLASLEGGQQ-LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA-EALFEALIRRDTI 684

Query: 260 AWGALL 265
           AW  ++
Sbjct: 685 AWNTII 690



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 4/247 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD     ++++  AKC     AR +  +MP+RD ++W A++ G    G + ++++LF  M
Sbjct: 145 PDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM 204

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q   +  NE ++ + L AC+   ALD G+  H    +  L + + +G+ALVD+Y+KCG +
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI 264

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F GM E+N  TW  ++ G A  G     L+LF  M +  V+ NE T  +VL+GC
Sbjct: 265 ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGC 324

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMKPHAG 259
                +++G+    S+  + G E   E  GC LVD+Y + G   +A+ V  K   KP   
Sbjct: 325 ANSKNLKQGQV-IHSLIIKCGYEG-NEFIGCGLVDMYSKCGLAIDAIGVF-KTIKKPDIV 381

Query: 260 AWGALLN 266
            W AL+ 
Sbjct: 382 VWSALIT 388



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 7/254 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            ++   +KCG    A  +F  + + D + W+A++    Q G+S E++ LFHLM++ D   
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N+ ++ S+LSA T+ G L  G+  H  + +   +  V +  ALV MY K G ++     +
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M +R++ +W + + GL   G  ++ L +F  M + G  PN  TF+S+L  C  +  V 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            GR+ H   ++ +     ++     L+D+Y +   L++A    N++ ++     W  ++ 
Sbjct: 534 YGRQVHAHIIKNQLDDNNFV--CTALIDMYAKCMYLEDADVAFNRLSVRD-LFTWTVIIT 590

Query: 267 ACRMYKNTEMGELA 280
               Y  T  GE A
Sbjct: 591 N---YAQTNQGEKA 601


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/442 (42%), Positives = 275/442 (62%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D   Q ++IS   KCG+ DLAR+ F++M   E+   +W+A+LA Y + G+  E +  F  
Sbjct: 172 DEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGA 231

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M     + +E SMVS LSAC HLGA D GR  H  + RN  ++   + T+LVDMY+KCG 
Sbjct: 232 MVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGC 291

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M ++N +T+++++ GLA++G G K+LE+F  M + G RP+   +V VL  
Sbjct: 292 IENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNA 351

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+EEG   FD MR E+ + P  +HYGC+VDL  RAGRLD+A  +I  MP  P   
Sbjct: 352 CSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTDT 411

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           AW +LLNACR++ N E+ E A ++L  L   N G Y++LS+++A + N D     R    
Sbjct: 412 AWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAV 471

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+ + PG S +EV    H F + D +HPR ++I  ML ++  +L+  GY  +T+ +  
Sbjct: 472 DRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSELAL 531

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D  EEEK   +  HS+K+A+AFGL+S  EG P+R+V NLR+  +CH  + +IS++F REI
Sbjct: 532 DAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREI 591

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRDRNRFH FK G CSC  YW
Sbjct: 592 VVRDRNRFHRFKRGACSCGNYW 613



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR-----EALHLFHLMQIHDVKLNEVS 91
           G +  A  +F  + + +   +N ++ GY   G         AL LF  M    V+ +  +
Sbjct: 81  GSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYT 140

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
              V  AC  LGAL +GR    ++ +   +       +L+  Y KCG  + A   F  M+
Sbjct: 141 FPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQME 200

Query: 152 --ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
             E+   +W++++      G   + +E F  M +AG RP+E + VS L  C  +G  + G
Sbjct: 201 DDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVG 260

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           R  H   +R    +  ++     LVD+Y + G ++ A  V + M  K
Sbjct: 261 RSIHCALLRNTARLNTFMS--TSLVDMYAKCGCIENAAAVFDAMDDK 305



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG-----EKSLELFSLMKQAGVRPNEVT 192
           G+M  A   F  + +   + + +++ G    G G       +L LF  M   GV P+  T
Sbjct: 81  GSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYT 140

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           F  V + C  +G ++EGR+       + G +        L+  YG+ G  D A     +M
Sbjct: 141 FPFVFKACAQLGALQEGRQ-LQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQM 199

Query: 253 PMKPHAGA-WGALLNA 267
                  A W ALL A
Sbjct: 200 EDDEQTTASWSALLAA 215



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 39/174 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+     VFD + + +    +AM+S                             
Sbjct: 285 MYAKCGCIENAAAVFDAMDDKNAWTYSAMVS----------------------------- 315

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             G A  G  R+AL +F  M     + +    V VL+AC+  G L++G       +R RL
Sbjct: 316 --GLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRC---FDRMRL 370

Query: 121 KMTVTLGTA----LVDMYSKCGNMNKAMDFFWGMKERNVYT-WTSVIGGLAMNG 169
           +  +T        +VD+ ++ G ++ A      M      T W S++    ++G
Sbjct: 371 EHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHG 424


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 289/445 (64%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E      TA++ A  K G V+ A K+F  + ++D +AW+AMLAGYAQ G++  A+ +F 
Sbjct: 28  YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 87

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +    +K NE +  S+L+ C    A + QG+  H +  ++RL  ++ + +AL+ MY+K 
Sbjct: 88  ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 147

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           GN+  A + F   +E+++ +W S+I G A +G   K+L++F  MK+  V+ + VTF+ V 
Sbjct: 148 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 207

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLVEEG ++FD M R+  I P  EH  C+VDLY RAG+L++A+ VI  MP    
Sbjct: 208 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 267

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           +  W  +L ACR++K TE+G LA+ K++ ++ ++  AYVLLSN+YAES +W     VR++
Sbjct: 268 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 327

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M  + VKK PG S IEV  + + F AGD +HP  ++I + L ++S RLK  GY  +T+ V
Sbjct: 328 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 387

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           + DI++E KE  L +HSE++AIAFGLI+  +G P+ I+KNLRVC DCH V K+I+K+  R
Sbjct: 388 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 447

Query: 438 EIIVRDRNRFHHF-KEGKCSCKGYW 461
           EI+VRD NRFHHF  +G CSC  +W
Sbjct: 448 EIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + +   + + T+GTAL+D Y K G + +A   F G+ ++++  W++++ G A  G  
Sbjct: 20  HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGET 79

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
           E ++++F  + + G++PNE TF S+L  C          + F     +  ++  L     
Sbjct: 80  EAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSA 139

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           L+ +Y + G ++ A +V  +   K    +W ++++
Sbjct: 140 LLTMYAKKGNIESAEEVFKRQREKDLV-SWNSMIS 173


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/434 (43%), Positives = 279/434 (64%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++I     C  V  ARK+F+ +  +D ++WN++++GY +CG + +AL LF  M +     
Sbjct: 268 SIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVP 327

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +EV+++SVL+AC  + AL  G     Y+ +    + V +GTAL+ MY+ CG++  A   F
Sbjct: 328 DEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVF 387

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M E+N+   T ++ G  ++G G +++ +F  M   GV P+E  F +VL  C   GLV+
Sbjct: 388 DEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVD 447

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG+E F  M R+Y +EP   HY CLVDL GRAG LDEA  VI  M +KP+   W ALL+A
Sbjct: 448 EGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSA 507

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR+++N ++  ++++KL EL       YV LSNIYA  + W+ V NVR ++  + ++K P
Sbjct: 508 CRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPP 567

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
             S +E+++ VH+FF GD +H + ++I   L +++ +LK AGY  +T+ V+YD+EEE KE
Sbjct: 568 SYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKE 627

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L  HSE++A+AF LI+   G  IRI KNLRVC DCH V KMISK+ NREII+RD  RF
Sbjct: 628 KMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRF 687

Query: 448 HHFKEGKCSCKGYW 461
           HHF++G CSC GYW
Sbjct: 688 HHFRDGLCSCGGYW 701



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 6/240 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    +++S   K GDV+ AR +FD M  RD  +WN M++G+ + G++R A  +F  
Sbjct: 156 EEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGD 215

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG---TALVDMYSK 136
           M+      +  +++++LSAC  +  L  G+  H Y+ RN     V  G    +++DMY  
Sbjct: 216 MRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCN 275

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C +++ A   F G++ ++V +W S+I G    G   ++LELF  M   G  P+EVT +SV
Sbjct: 276 CESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISV 335

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L  C  +  +  G       ++R Y +   +     L+ +Y   G L  A  V ++MP K
Sbjct: 336 LAACNQISALRLGATVQSYVVKRGYVVNVVVGT--ALIGMYANCGSLVCACRVFDEMPEK 393



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 1/183 (0%)

Query: 30  ISAC-AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++AC A CG +  A+ +FD++  ++   WN+M+ GYA       AL L+  M     K +
Sbjct: 64  LAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPD 123

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             +   VL AC  L   + GR  H  +    L+  V +G +++ MY K G++  A   F 
Sbjct: 124 NFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFD 183

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R++ +W +++ G   NG    + E+F  M++ G   +  T +++L  C  V  ++ 
Sbjct: 184 RMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKV 243

Query: 209 GRE 211
           G+E
Sbjct: 244 GKE 246



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 3/175 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           ++L + T+  +L Q    H ++     L+    L T L   Y+ CG+M  A   F  +  
Sbjct: 27  TLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVL 86

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           +N + W S+I G A N +  ++L L+  M   G +P+  T+  VL+ C  + L E GR+ 
Sbjct: 87  KNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRK- 145

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             ++    G+E  +     ++ +Y + G ++ A  V ++M ++    +W  +++ 
Sbjct: 146 VHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLT-SWNTMMSG 199


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/452 (41%), Positives = 279/452 (61%), Gaps = 1/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  GI + D V  +A+    AKCG VD AR +FD MP RD ++W AM+  Y    +
Sbjct: 185 HCHVVRRGI-DADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARR 243

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             E   LF  M    ++ NE +   VL AC    +   G+  H  + ++R   +    +A
Sbjct: 244 DGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESA 303

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV MYSK G+M  A+  F GM + ++ +WT++I G A NG  +++L  F ++ ++G RP+
Sbjct: 304 LVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPD 363

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            VTFV VL  C   GLV++G   F S++ EYGIE   +HY C++DL  R+G  + A ++I
Sbjct: 364 HVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMI 423

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
           N M +KP+   W +LL  CR++KN  +   A+  L E+E +N   YV L+NIYA    +D
Sbjct: 424 NTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVGLFD 483

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
            V N R+IM+ KG+ K+P  S IEV   +H F  GD+ HP+  ++  +L ++  +++  G
Sbjct: 484 EVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEG 543

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YVA+T  V++D+E+E+K+  +  HSE++A+AFG+I+  +G PI++ KNLR+C DCH   K
Sbjct: 544 YVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICGDCHTTIK 603

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +ISK+  REIIVRD NRFHHFK G CSC+ YW
Sbjct: 604 LISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 6/257 (2%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCG-DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +   +   DV     +++A  +    +  AR +FD MP RD  +W+A+++ +A+ G+ R 
Sbjct: 83  LLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHARHGQPRA 142

Query: 73  ALHLFHLMQIHDVKL---NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           AL ++  M          NE +  S L+A T       GR  H ++ R  +     + +A
Sbjct: 143 ALAIYRRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSA 202

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L DMY+KCG ++ A   F  M  R+V +WT+++          +   LF  M ++G++PN
Sbjct: 203 LADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPN 262

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E T+  VLR C      + G++    M +    +        LV +Y + G +  A+ V 
Sbjct: 263 EFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAE-SALVHMYSKYGDMGTAVRVF 321

Query: 250 NKMPMKPHAGAWGALLN 266
             MP K    +W A+++
Sbjct: 322 RGMP-KLDLVSWTAMIS 337



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 40/213 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +G   +VF G+ + D+V  TAMIS  A+ G  D                    
Sbjct: 307 MYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPD-------------------- 346

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                      EAL  F ++     + + V+ V VLSAC H G +D+G    H   +   
Sbjct: 347 -----------EALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYG 395

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELF 178
           ++ T      ++D+ S+ G   +A +    M  + N + W S++GG  ++    K++ L 
Sbjct: 396 IEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIH----KNVRLA 451

Query: 179 SLMKQA--GVRP-NEVTFVSVLRGCCVVGLVEE 208
               +A   + P N  T+V++      VGL +E
Sbjct: 452 RWAAEALFEIEPENPATYVTLANIYASVGLFDE 484


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 285/425 (67%), Gaps = 6/425 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+V+ A ++ + +  +D I+WN ++ GY      +EAL LF  M       
Sbjct: 247 ALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 306

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT----LGTALVDMYSKCGNMNKA 143
           N+V+M+S+L AC HLGA+D GRW HVYI++    + VT    L T+L+DMY+KCG+++ A
Sbjct: 307 NDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAA 366

Query: 144 MDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
                     R++ TW ++I G AM+G    + ++FS M++ G+ P+++TFV +L  C  
Sbjct: 367 PQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSH 426

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            G+++ GR  F SMR++Y I P LEHYGC++DL G +G   EA ++IN MPM+P    W 
Sbjct: 427 SGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWC 486

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           +LL AC+++ N E+GE  ++KL+++E +N G+YVLLSNIYA +  W+ V  +R ++  KG
Sbjct: 487 SLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKG 546

Query: 323 V-KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           + KK+PGCS IE+D  VHEF  GD+ HP+  EI  ML E+   L+ AG+V +T+ V+ ++
Sbjct: 547 MKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEM 606

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+ TK+ISK++ REII 
Sbjct: 607 EEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIA 666

Query: 442 RDRNR 446
           RDR R
Sbjct: 667 RDRTR 671



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 152/274 (55%), Gaps = 3/274 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   QKVFD     DVV  TA+I+  A  G ++ A+KMFDE+P +D ++WNAM
Sbjct: 119 MYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAM 178

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  ++AL LF  M   +VK +E +M +V+SAC   G+++ GR  H +I  +  
Sbjct: 179 ISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGF 238

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+YSKCG +  A +   G+  ++V +W ++IGG       +++L LF  
Sbjct: 239 GSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQE 298

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEPWLEHYGCLVDLYG 237
           M ++G  PN+VT +S+L  C  +G ++ GR    + D   +   +         L+D+Y 
Sbjct: 299 MLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYA 358

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           + G +D A  V +          W A++    M+
Sbjct: 359 KCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMH 392



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 33/255 (12%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F+ +PE + + WN M  G+A       AL L+ +M    +  N  +   +L +C  
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV--YT-- 157
                +G+  H ++ +    + + + T+L+ MY++ G +  A   F     R+V  YT  
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 158 ---------------------------WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
                                      W ++I G A  G  +K+LELF  M +  V+P+E
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            T  +V+  C   G +E GR+   S   ++G    L+    L+DLY + G ++ A +++ 
Sbjct: 208 STMATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 251 KMPMKPHAGAWGALL 265
            +  K    +W  L+
Sbjct: 267 GLSNK-DVISWNTLI 280


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/444 (43%), Positives = 285/444 (64%), Gaps = 3/444 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H P V   TA++++ +K G  + A  +F  + ++D +AW+AML+ +AQ G    A +LF+
Sbjct: 433 HIPSV--GTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFN 490

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M I  +K NE ++ SV+ AC    A +DQGR  H    + R    + + +ALV MYS+ 
Sbjct: 491 KMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRK 550

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           GN++ A   F    +R++ +W S+I G A +G   K++E F  M+ +G++ + VTF++V+
Sbjct: 551 GNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVI 610

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            GC   GLV EG+++FDSM R++ I P +EHY C+VDLY RAG+LDE + +I  MP    
Sbjct: 611 MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAG 670

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           A  W  LL ACR++KN E+G+ ++ KL+ LE  +   YVLLSNIYA +  W     VR++
Sbjct: 671 AMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKL 730

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M  + VKK  GCS I++  +VH F A D++HP  ++I   L  I  RLK  GY  NT+ V
Sbjct: 731 MDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFV 790

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++DI E++KE  L  HSE++A+AFGLI+   G P++IVKNLRVC DCH V KM+S + +R
Sbjct: 791 LHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDR 850

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EII+RD +RFHHF  G CSC  +W
Sbjct: 851 EIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 129/264 (48%), Gaps = 1/264 (0%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG   +C  V  G    +V   T+++    KCG V    ++F+ MP+++ + W ++L G 
Sbjct: 117 LGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC 176

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           A      E + LF  M+   +  N  +  SVLSA    GALD G+  H    +   + +V
Sbjct: 177 AHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSV 236

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            +  +L++MY+KCG +  A   F  M+ R++ +W +++ GL +N    ++L+LF   +  
Sbjct: 237 FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRAT 296

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
             +  + T+ +V++ C  +  +   R+   S   ++G          L D Y + G L +
Sbjct: 297 MGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELAD 355

Query: 245 ALDVINKMPMKPHAGAWGALLNAC 268
           AL++ +      +  +W A+++ C
Sbjct: 356 ALNIFSMTTGSRNVVSWTAIISGC 379



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 11/237 (4%)

Query: 42  ARKMFDEMPERDP-IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100
           AR   DE+P RD  +  N +L  YA+ G   E L  F + +   V ++  ++  VL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 101 HLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
            +     G   H + ++    +  V+ GT+LVDMY KCG++ + ++ F GM ++NV TWT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRR 218
           S++ G A      + + LF  M+  G+ PN  TF SVL      G ++ G R H  S++ 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK- 229

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL-----LNACRM 270
            +G    +     L+++Y + G +++A  V N M  +    +W  L     LN C +
Sbjct: 230 -FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMV-SWNTLMAGLQLNECEL 284



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 27  TAMISACAKCGDVDLARKMFD-EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           TA+  A +KCG++  A  +F      R+ ++W A+++G  Q G    A+ LF  M+   V
Sbjct: 341 TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRV 400

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             NE +  ++L A   +         H  + +   +   ++GTAL+  YSK G+   A+ 
Sbjct: 401 MPNEFTYSAMLKASLSILPPQ----IHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALS 456

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC-CVVG 204
            F  +++++V  W++++   A  G  E +  LF+ M   G++PNE T  SV+  C C   
Sbjct: 457 IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSA 516

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            V++GR+ F ++  +Y     +     LV +Y R G +D A  V  +
Sbjct: 517 GVDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER 562


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 287/474 (60%), Gaps = 31/474 (6%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E D+    A++    K GD+D AR+ F+E+P++D I W+ M+A YAQ  +S+EA+ +F 
Sbjct: 271 YELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V  N+ +  SVL AC  +  L+ G   H ++ +  L   V +  AL+D+Y+KCG
Sbjct: 331 QMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG 390

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ--------------- 183
            M  +M+ F     RN  TW +VI G    G GEK+L LF  M +               
Sbjct: 391 RMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALR 450

Query: 184 ----------------AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
                             V+P+++TFV VL  C   GL+++G+ +F SM +++GIEP +E
Sbjct: 451 ACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIE 510

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
           HY C+V L GR G LD+A+ +I+++P +P    W ALL AC ++ + E+G +++++++E+
Sbjct: 511 HYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEM 570

Query: 288 ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET 347
           E ++   +VLLSN+YA +K WD V +VR+ MK KGVKK PG S IE    VH F  GD +
Sbjct: 571 EPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTS 630

Query: 348 HPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLK 407
           HP    I  ML  +  + K AGY+ N N V+ D+E+EEKE  L  HSE++A++FG+I   
Sbjct: 631 HPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTP 690

Query: 408 EGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            G PIRI+KNLR+C DCH   K ISKV  REI+VRD NRFHHF+EG CSC  YW
Sbjct: 691 SGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 137/243 (56%), Gaps = 3/243 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +F   HE +    TA+I A + CG VD+AR++FD +  +D ++W  M+  +A+    +EA
Sbjct: 165 IFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEA 224

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L LF  M++   K N  +  SV  AC  L A D G+  H    ++R ++ + +G AL+D+
Sbjct: 225 LKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDL 284

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+K G+++ A   F  + +++V  W+ +I   A +   ++++E+F  M+QA V PN+ TF
Sbjct: 285 YTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTF 344

Query: 194 VSVLRGCCVV-GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            SVL+ C  + GL    + H   ++   G+   +     L+D+Y + GR++ ++++  + 
Sbjct: 345 ASVLQACATMEGLNLGNQIHCHVIK--IGLHSDVFVSNALMDVYAKCGRMENSMELFAES 402

Query: 253 PMK 255
           P +
Sbjct: 403 PHR 405



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 116/215 (53%), Gaps = 3/215 (1%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A K+FDEMPER+ I++  ++ GYA+  +  EA+ LF  +     +LN     ++L     
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
               + G   H  I +   +    +GTAL+D YS CG ++ A + F G+  +++ +WT +
Sbjct: 152 TDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREY 220
           +   A N   +++L+LFS M+  G +PN  TF SV + C  +   + G+  H  +++  Y
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            ++ ++     L+DLY ++G +D+A     ++P K
Sbjct: 272 ELDLYVG--VALLDLYTKSGDIDDARRAFEEIPKK 304



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 21/209 (10%)

Query: 58  NAMLAGYAQCGKSREALHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           N  L  +++ G S ++  L    +  +   + N  +  + L  C       +G+  H  I
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEI 64

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175
            +    + +     L++MY K   +  A   F  M ERN  ++ ++I G A +    +++
Sbjct: 65  LKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAI 124

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG----- 230
           ELF  + + G   N   F ++L+        E G          +GI   +   G     
Sbjct: 125 ELFVRLHREGHELNPFVFTTILKLLVSTDCGELG----------WGIHACIFKLGHESNA 174

Query: 231 ----CLVDLYGRAGRLDEALDVINKMPMK 255
                L+D Y   GR+D A +V + +  K
Sbjct: 175 FVGTALIDAYSVCGRVDVAREVFDGILYK 203


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 289/445 (64%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E      TA++ A  K G V+ A K+F  + ++D +AW+AMLAGYAQ G++  A+ +F 
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 483

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +    +K NE +  S+L+ C    A + QG+  H +  ++RL  ++ + +AL+ MY+K 
Sbjct: 484 ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 543

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           GN+  A + F   +E+++ +W S+I G A +G   K+L++F  MK+  V+ + VTF+ V 
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLVEEG ++FD M R+  I P  EH  C+VDLY RAG+L++A+ VI  MP    
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           +  W  +L ACR++K TE+G LA+ K++ ++ ++  AYVLLSN+YAES +W     VR++
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M  + VKK PG S IEV  + + F AGD +HP  ++I + L ++S RLK  GY  +T+ V
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 783

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           + DI++E KE  L +HSE++AIAFGLI+  +G P+ I+KNLRVC DCH V K+I+K+  R
Sbjct: 784 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 843

Query: 438 EIIVRDRNRFHHF-KEGKCSCKGYW 461
           EI+VRD NRFHHF  +G CSC  +W
Sbjct: 844 EIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 136/272 (50%), Gaps = 16/272 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +  +    ++I+   KCG+V  AR +FD+   +  + WN+M++GYA  G   EAL +F+ 
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+++ V+L+E S  SV+  C +L  L      H  + +        + TAL+  YSKC  
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345

Query: 140 MNKAMDFFWGMKE----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           M  A+  F   KE     NV +WT++I G   N   E++++LFS MK+ GVRPNE T+  
Sbjct: 346 MLDALRLF---KEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSV 402

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L    V+   E    H   ++  Y  E        L+D Y + G+++EA  V + +  K
Sbjct: 403 ILTALPVISPSE---VHAQVVKTNY--ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK 457

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
               AW A+L     Y  T   E A +   EL
Sbjct: 458 DIV-AWSAMLAG---YAQTGETEAAIKMFGEL 485



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 1/192 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ +  G  + DV   T+++    K  +    RK+FDEM ER+ + W  +++GYA+   
Sbjct: 116 HCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSM 174

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + E L LF  MQ    + N  +  + L      G   +G   H  + +N L  T+ +  +
Sbjct: 175 NDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 234

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+++Y KCGN+ KA   F   + ++V TW S+I G A NG   ++L +F  M+   VR +
Sbjct: 235 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLS 294

Query: 190 EVTFVSVLRGCC 201
           E +F SV++ C 
Sbjct: 295 ESSFASVIKLCA 306



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 125/246 (50%), Gaps = 6/246 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D   +TA++ A +KC  +  A ++F E+    + ++W AM++G+ Q     EA+ LF  M
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   V+ NE +   +L+A   +   +     H  + +   + + T+GTAL+D Y K G +
Sbjct: 389 KRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKV 444

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A   F G+ ++++  W++++ G A  G  E ++++F  + + G++PNE TF S+L  C
Sbjct: 445 EEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
                     + F     +  ++  L     L+ +Y + G ++ A +V  +   K    +
Sbjct: 505 AATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLV-S 563

Query: 261 WGALLN 266
           W ++++
Sbjct: 564 WNSMIS 569



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 112/225 (49%), Gaps = 2/225 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +FD+ P RD  ++ ++L G+++ G+++EA  LF  +    ++++     SVL     
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L     GR  H    +      V++GT+LVD Y K  N       F  MKERNV TWT++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I G A N   ++ L LF  M+  G +PN  TF + L      G+   G +   ++  + G
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNG 224

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           ++  +     L++LY + G + +A  + +K  +K     W ++++
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVV-TWNSMIS 268


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/420 (44%), Positives = 272/420 (64%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           AR++F+ +  +D ++WN+M+ GYA+ G + E+L LF  M +     ++V+ ++VL AC  
Sbjct: 317 ARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQ 376

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           + AL  G   H Y+ +        +GTALVDMYSKCG++  +   F  M ++++ +W+++
Sbjct: 377 IAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAM 436

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           + G  ++G G +++ +   MK   V P+   F S+L  C   GLV EG+E F  M +EY 
Sbjct: 437 VAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYN 496

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELAS 281
           ++P L HY C+VDL GRAG LDEA  +I  M +KP +  W ALL A R++KN ++ E+++
Sbjct: 497 VKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISA 556

Query: 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEF 341
           +K+ ++  K   +Y+ LSNIYA  K WD V  VR +++ KG+KK PGCS IE+D  VH F
Sbjct: 557 QKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRF 616

Query: 342 FAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAF 401
             GD++H +  +I   L E+ ++LK AGY  +T+ V YD+EEE KE  L  HSE++AIAF
Sbjct: 617 LVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAF 676

Query: 402 GLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            LI+   G  IRI KNLRVC DCH VTK+IS++  REII+RD +RFHHF +G CSC  YW
Sbjct: 677 ALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 3/247 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    ++++  AK GD+  AR +FD M ERD  +WN M++GYA+   S  A  +F L
Sbjct: 193 ESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDL 252

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTALVDMYSKCG 138
           M    +  +  +++ +LSAC  L A+ +G+  H Y  RN +         +L++MY  C 
Sbjct: 253 MGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCN 312

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M  A   F  ++ ++  +W S+I G A NG   +SL LF  M   G  P++VTF++VL 
Sbjct: 313 CMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLG 372

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +  +  G      + ++ G +        LVD+Y + G L  +  V ++MP K   
Sbjct: 373 ACDQIAALRYGMSIHSYLVKK-GFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLV 431

Query: 259 GAWGALL 265
            +W A++
Sbjct: 432 -SWSAMV 437



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 34/285 (11%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I E +    T + +  A CG +  A  +FD +  ++   WN M+ GYA  G   ++L L+
Sbjct: 90  ILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLY 149

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M     + +  +   VL AC  L  ++ GR  H  +    L+  + +G +L+ MY+K 
Sbjct: 150 REMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKF 209

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+M  A   F  M ER++ +W ++I G A N     +  +F LM +AG+  +  T + +L
Sbjct: 210 GDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLL 269

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYG------IEPWLEHY---GCLVDL------------ 235
             C  +  V+EG+  H  ++R   G          +E Y    C+VD             
Sbjct: 270 SACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDT 329

Query: 236 ---------YGRAGRLDEALDVINKMPMK---PHAGAWGALLNAC 268
                    Y R G   E+L +  +M +    P    + A+L AC
Sbjct: 330 VSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGAC 374


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 281/436 (64%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++ A  K G+V  + ++F  +P +D +AW+AML G AQ   S +A+ +F  +    VK
Sbjct: 443 TALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVK 502

Query: 87  LNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            NE +  SV++AC+   A ++ G+  H    ++     + + +AL+ MYSK GN+  A  
Sbjct: 503 PNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEK 562

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F   +ER++ +W S+I G   +G  +K+LE+F +M+  G+  ++VTF+ VL  C   GL
Sbjct: 563 VFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGL 622

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           VEEG ++F+ M ++Y I+   EHY C+VDLY RAG  D+A+D+IN MP       W  LL
Sbjct: 623 VEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLL 682

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR+++N E+G+LA+ KLV L+  +   YVLLSNI+A + NW+   +VR++M  + VKK
Sbjct: 683 AACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKK 742

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
             GCS IE+   +  F AGD +HP  + +   L E+S +LK  GY  +TN V +D+EEE 
Sbjct: 743 EAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEH 802

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L +HSE++AIA+GLI+L  G PI+I KNLR+C DCH+V ++IS +  R +IVRD N
Sbjct: 803 KEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSN 862

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK G CSC GYW
Sbjct: 863 RFHHFKGGVCSCGGYW 878



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 24/267 (8%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ +  G  E DV   T+++    K  D +  R +FDEM  ++ ++W ++L+GYA+ G 
Sbjct: 127 HCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + E +HL + MQ+  V  N  +  +VL A      ++ G   H  I +N  + T  +  A
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNA 245

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ MY K   +  A   F  M  R+  TW  +IGG A  G   +  ++F  M+ AGV+ +
Sbjct: 246 LICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLS 305

Query: 190 EVTFVSVLRGCCV-----------VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
              F + L+ C              G+V+ G E    +R              L+  Y +
Sbjct: 306 RTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT------------ALMVTYSK 353

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALL 265
              +DEA  + +      +   W A++
Sbjct: 354 CSSVDEAFKLFSMADAAHNVVTWTAMI 380



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 26  QTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           +TA++   +KC  VD A K+F       + + W AM+ G+ Q   +++A+ LF  M    
Sbjct: 344 RTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREG 403

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V+ N  +  +VL A      L Q    H  I +   +   ++ TAL+D Y K GN+ ++ 
Sbjct: 404 VRPNHFTYSTVL-AGKPSSLLSQ---LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F+ +  +++  W++++ GLA     EK++E+F  + + GV+PNE TF SV+  C    
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
              E  +   +   + G    L     L+ +Y + G ++ A  V  +
Sbjct: 520 ATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTR 566



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A ++FDE P +D   +N +L  +++    REALHLF  +    + ++ +++   L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L     GR  H    ++     V++GT+LVDMY K  +       F  M  +NV +WTS+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           + G A NG  ++ + L + M+  GV PN  TF +VL       ++E G +   +M  + G
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ-VHAMIVKNG 235

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            E        L+ +Y ++  + +A  V + M ++
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVR 269


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/442 (44%), Positives = 280/442 (63%), Gaps = 2/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  ++++I A  K GD+D  R++FDEM  RD + WN+++AG+AQ G    A+ LF  
Sbjct: 211 DSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMR 270

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+      N+ ++ SVL ACT +  L+ GR  H ++ +   +  + L  AL+DMY KCG+
Sbjct: 271 MKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGS 328

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M +R+V +W+++I GLA NG   ++L +F LMK  GV PN +T V VL  
Sbjct: 329 LEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFA 388

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVE+G  +F SM++ +GI+P  EH+ C+VDL GRAG+LDEA++ I  M ++P A 
Sbjct: 389 CSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAV 448

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL ACRM+K+  +   A+R++++LE  + GA VLLSN YA+ + W       + M+
Sbjct: 449 IWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMR 508

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+KK PG S IE+++ VH F AGD +HP  + I   L  +  R+   GYV  T  V+ 
Sbjct: 509 DRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQ 568

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+  E+KED L  HSEK+AIAFG +    G PIRI+KNLR+C DCH   K++SK   R I
Sbjct: 569 DLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMI 628

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD  RFHHF++G CSC  YW
Sbjct: 629 IIRDPVRFHHFQDGACSCGDYW 650



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLFHLMQ 81
           +    +++S  AK G +D A ++FD MPER+ + W  ++A  A   G+  EAL     M 
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMW 174

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N  +  SVL AC   G L      H    +  L   V + ++L+D Y K G+++
Sbjct: 175 RDGVAPNAYTFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLD 231

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  M  R++  W S+I G A +G G  ++ELF  MK AG   N+ T  SVLR C 
Sbjct: 232 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACT 291

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            + ++E GR+ H   ++ E      L  +  L+D+Y + G L++A  + ++MP +
Sbjct: 292 GMVMLEAGRQVHAHVLKYERD----LILHNALLDMYCKCGSLEDAEALFHRMPQR 342



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 10/159 (6%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E D++   A++    KCG ++ A  +F  MP+RD I+W+ M++G AQ GKS EAL +F 
Sbjct: 309 YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFD 368

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG-----TALVDM 133
           LM+   V  N ++MV VL AC+H G ++ G W   Y  R+  K+            +VD+
Sbjct: 369 LMKSEGVAPNRITMVGVLFACSHAGLVEDG-W---YYFRSMKKLFGIQPEREHHNCMVDL 424

Query: 134 YSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAG 171
             + G +++A++F   M  E +   W +++G   M+ +G
Sbjct: 425 LGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSG 463


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/437 (45%), Positives = 291/437 (66%), Gaps = 2/437 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH--LMQIHD 84
           T ++   AK G V  A  +F++MP ++ ++W+AM+A YA+ GK+ EAL LF   +++  D
Sbjct: 214 TTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQD 273

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           +  N V+MVSVL AC  L AL+QGR  H YI R  L   + + +ALV MY++CG +    
Sbjct: 274 LCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQ 333

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M +R+V +W S+I    ++G G+K++ +F  M   GV P+ ++FVSVL  C   G
Sbjct: 334 RVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAG 393

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           LV+EG+  F+SM   +GI P +EHY C+VDL GRA RL+EA  +I  M ++P    WG+L
Sbjct: 394 LVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSL 453

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L +CR++ N E+ E AS +L +LE  N G YVLL++IYAE+  WD V  V+++++A+G++
Sbjct: 454 LGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQ 513

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PG S IEV R+++ F + DE +PR  ++  +L ++S  LK  GYV  T  V+YD++  
Sbjct: 514 KVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAA 573

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EKE  +  HSEK+A+AFGLI+  +G  IRI K+LR+C DCH  TK ISK  N+EI+VRD 
Sbjct: 574 EKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDV 633

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFHHF++G CSC  YW
Sbjct: 634 NRFHHFRDGVCSCGDYW 650



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 8/254 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D    T +I+  +    +D ARK+FD+   R    +NA+    +  G   E L+++  
Sbjct: 102 DQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRR 161

Query: 80  MQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           M    +  +  +   VL AC      +  L++GR  H +I R+     V + T LVDMY+
Sbjct: 162 MNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYA 221

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS--LMKQAGVRPNEVTF 193
           K G ++ A   F  M  +NV +W+++I   A NG   ++LELF   +++   + PN VT 
Sbjct: 222 KFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTM 281

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           VSVL+ C  +  +E+GR     + R+ G++  L     LV +Y R G+L+    V ++M 
Sbjct: 282 VSVLQACAALAALEQGRLIHGYILRK-GLDSILPVISALVTMYARCGKLELGQRVFDQMD 340

Query: 254 MKPHAGAWGALLNA 267
            K    +W +L+++
Sbjct: 341 -KRDVVSWNSLISS 353



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N ++    + G   +AL L  L         E+ ++S    CTH  +L   +  H ++  
Sbjct: 43  NKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILS----CTHQNSLLDAQRVHRHLLE 98

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           N       L T L++MYS   +++ A   F   + R +Y + ++   L++ G GE+ L +
Sbjct: 99  NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNM 158

Query: 178 FSLMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           +  M   G+  +  T+  VL+ C    C V L+ +GRE    + R +G + ++     LV
Sbjct: 159 YRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILR-HGYDGYVHIMTTLV 217

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           D+Y + G +  A  V N+MP+K +  +W A++ AC          L   + + LET++
Sbjct: 218 DMYAKFGCVSNASCVFNQMPVK-NVVSWSAMI-ACYAKNGKAFEALELFRELMLETQD 273


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 275/441 (62%), Gaps = 1/441 (0%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+   + ++    KCGD+  A ++F E+   D +AW  M++GY + G    AL ++HLM+
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMR 1192

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  V+ +E +  +++ A + L AL+QG+  H  + +    +   +GT+LVDMY KCG++ 
Sbjct: 1193 VSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQ 1252

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  M  R V  W +++ GLA +G  +++L LF  M+  G++P++VTF+ VL  C 
Sbjct: 1253 DAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACS 1312

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GL  E  ++FD+M + YGI P +EHY CLVD  GRAGR+ EA +VI  MP K  A  +
Sbjct: 1313 HSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMY 1372

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             ALL ACR   + E  +  + KL+ L+  +  AYVLLSNIYA S+ WD V + R +MK K
Sbjct: 1373 RALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLK 1432

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG-YVANTNPVMYD 380
             VKK PG S I+V  +VH F   D +HP+ + I   + ++ +R++  G YV +T+  + D
Sbjct: 1433 NVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLD 1492

Query: 381  IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            +EEEEKE  L  HSEK+AIAFGLIS      IR++KNLRVC DCH   K ISK+  REI+
Sbjct: 1493 VEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIV 1552

Query: 441  VRDRNRFHHFKEGKCSCKGYW 461
            +RD NRFHHF+ G CSC  YW
Sbjct: 1553 LRDANRFHHFRNGTCSCGDYW 1573



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 133/247 (53%), Gaps = 8/247 (3%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D    TA+I   +K G +D A  +     + D  +WNA++ GY +  KSR+AL  F LM 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + ++E+++ + + A   L  L QG+    Y  +      + + + ++DMY KCG+M 
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A++ F  +   +   WT++I G   NG  + +L ++ LM+ +GV+P+E TF ++++   
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211

Query: 202  VVGLVEEGRE-HFDSMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             +  +E+G++ H + ++ +Y     L+H+    LVD+Y + G + +A  V  KM ++   
Sbjct: 1212 CLTALEQGKQIHANVVKLDYS----LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KV 1266

Query: 259  GAWGALL 265
              W A+L
Sbjct: 1267 VFWNAML 1273



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 130/253 (51%), Gaps = 13/253 (5%)

Query: 21   PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            P V    ++++  +K G V  A K F   PE D I+WN M++ YAQ     EA+  F  +
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRW------AHVYIERNRLKMTVTLGTALVDMY 134
                +K ++ ++ SVL AC+     D+G +       HVY  +  +     + TAL+D+Y
Sbjct: 987  LRDGLKPDQFTLASVLRACS---TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY 1043

Query: 135  SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
            SK G M++A     G  + ++ +W +++ G   +    K+LE FSLM + G+  +E+T  
Sbjct: 1044 SKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLA 1103

Query: 195  SVLRGC-CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            + ++   C++ L +  +    +++  +  + W+     ++D+Y + G +  AL++  ++ 
Sbjct: 1104 TAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS--SGVLDMYIKCGDMPNALELFGEIS 1161

Query: 254  MKPHAGAWGALLN 266
             +P   AW  +++
Sbjct: 1162 -RPDEVAWTTMIS 1173



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 10/210 (4%)

Query: 42   ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
            A KMF      +  AWN  L  +   G+   A+  F  +    +  + V++V +LSA   
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVG 906

Query: 102  LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
               LD G   H  + ++     V +  +L++MYSK G +  A   F    E ++ +W ++
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 162  IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD--SMRRE 219
            I   A N    +++  F  + + G++P++ T  SVLR C      +EG E+F   S    
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST---GDEG-EYFTLGSQVHV 1022

Query: 220  YGIEPWLEH----YGCLVDLYGRAGRLDEA 245
            Y I+  + +       L+DLY + G++DEA
Sbjct: 1023 YAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR-----EALH 75
           PD      +I+  +KCG +  AR++FD+  +RD + WN++LA YAQ   S      E   
Sbjct: 644 PDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFR 703

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF L++     +  +++  +L  C   G +      H Y  +   ++ + +  ALV++Y 
Sbjct: 704 LFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYC 763

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           K G + +A   F  M ER+   W  ++     N   +++L  FS   ++G  P+
Sbjct: 764 KYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GY  K+     E D+    A+++   K G V  AR +FD+MPERD + WN ML  Y +  
Sbjct: 741 GYAVKIG---FELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 69  KSREALHLF 77
              EAL  F
Sbjct: 798 FQDEALRFF 806


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/464 (42%), Positives = 290/464 (62%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFD--GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           MY+  G +   +++ +  G  +  +   TA++    K GD++ A+ +FD + +RD +AW 
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWT 382

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GY Q G   EA++LF  M   + + N  ++ ++LS  + L +L  G+  H    ++
Sbjct: 383 AMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKS 442

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLEL 177
               +V++  AL+ MY+K G++  A   F  ++ ER+  +WTS+I  LA +G  E++LEL
Sbjct: 443 GEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M   G+RP+ +T+V V   C   GLV +GR++FD M+    I P L HY C+VDL+G
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG L EA + I KMP++P    WG+LL+ACR+YKN ++G++A+ +L+ LE +N GAY  
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSA 622

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+N+Y+    W+    +R+ MK   VKK  G S IEV  +VH F   D  HP+ NEI + 
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYIT 682

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + +I   +K  GYV +T  V++D+EEE KE  L  HSEK+AIAFGLIS  +   +RI+KN
Sbjct: 683 MKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKN 742

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   K ISK+  REIIVRD  RFHHFK+G CSC+ YW
Sbjct: 743 LRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 33/287 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G   + +K+FD +          ++SA AK GD+D + + FD +P+RD ++W  M
Sbjct: 58  VYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTM 117

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY   G+  +A+ +   M    ++ ++ ++ +VL++      L+ G+  H +I +  L
Sbjct: 118 IVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGL 177

Query: 121 KMTVTLGTALVDMYSKCGN-------------------------------MNKAMDFFWG 149
           +  V++  +L++MY+KCG+                               M+ AM  F  
Sbjct: 178 RGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQ 237

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M ER++ TW S+I G    G   ++L++FS +++ + + P+  T  SVL  C  +  +  
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCI 297

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           G E   S     G +        L+ +Y R G ++ A  +I +   K
Sbjct: 298 G-EQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 43/292 (14%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYA 65
           + + + D +  PD     +++SACA    + +  ++   +     +   I  NA+++ Y+
Sbjct: 266 FSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYS 325

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           +CG    A  L       D+K+                                      
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGF----------------------------------- 350

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
             TAL+D Y K G+MN+A + F  +K+R+V  WT++I G   +G   +++ LF  M    
Sbjct: 351 --TALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEE 408

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            RPN  T  ++L     +  +  G++   S  +   I   +     L+ +Y +AG +  A
Sbjct: 409 QRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGSITSA 467

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYV 296
               + +  +    +W +++ A   + + E   EL    L+E    +H  YV
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYV 519


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/462 (41%), Positives = 276/462 (59%), Gaps = 5/462 (1%)

Query: 2   YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           Y    C     KV D +     D+V    +I    +  +  +A+ +F++M  RD + WN 
Sbjct: 53  YVHCNCRSIVYKVIDQVFCWSIDLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNT 112

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY +  +  EAL LF  M   +V+ ++ +  SV++ C  LGAL   +W H  +   R
Sbjct: 113 MIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKR 172

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +++   L +AL+DMYSKCG +  A + F G++  NV  W ++I GLA++G    ++++F+
Sbjct: 173 IELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFT 232

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+   V P+ +TF+ +L  C   GLV+EGR++FD MR  Y ++P +EHYG +VDL GRA
Sbjct: 233 KMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRA 292

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L+EA  +I  MPM+P    W ALL ACR YK  E+GE A   +  L +   G YVLLS
Sbjct: 293 GLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAAMANISRLRS---GDYVLLS 349

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIY   K WD    V ++MK KGV K+ G S  E    +H F AGD +HP    I  ML 
Sbjct: 350 NIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLHPFKAGDRSHPETEAIYKMLE 409

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
            + +R KLAGYV  T+ V  D+ EEEKE  L  HSEK+A+A+G++    G  +RI KNLR
Sbjct: 410 GLIQRTKLAGYVPTTDLVTMDVSEEEKEGNLYHHSEKLALAYGILKTTSGAEVRISKNLR 469

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C+DCH   K++S++ +R IIVRDR RFH F+ G CSC  YW
Sbjct: 470 ICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENGLCSCGDYW 511



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +   +++FDG+   +V    AMIS                             
Sbjct: 186 MYSKCGKIQTAKEIFDGVQRNNVCIWNAMIS----------------------------- 216

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNR 119
             G A  G + +A+ +F  M++ +V  + ++ + +L+AC+H G + +GR +  +   R  
Sbjct: 217 --GLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYS 274

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           ++  +    A+VD+  + G + +A      M  E +V  W +++G 
Sbjct: 275 VQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGA 320


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 275/441 (62%), Gaps = 1/441 (0%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+   + ++    KCGD+  A ++F E+   D +AW  M++GY + G    AL ++HLM+
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMR 1192

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  V+ +E +  +++ A + L AL+QG+  H  + +    +   +GT+LVDMY KCG++ 
Sbjct: 1193 VSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQ 1252

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  M  R V  W +++ GLA +G  +++L LF  M+  G++P++VTF+ VL  C 
Sbjct: 1253 DAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACS 1312

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GL  E  ++FD+M + YGI P +EHY CLVD  GRAGR+ EA +VI  MP K  A  +
Sbjct: 1313 HSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMY 1372

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             ALL ACR   + E  +  + KL+ L+  +  AYVLLSNIYA S+ WD V + R +MK K
Sbjct: 1373 RALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLK 1432

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG-YVANTNPVMYD 380
             VKK PG S I+V  +VH F   D +HP+ + I   + ++ +R++  G YV +T+  + D
Sbjct: 1433 NVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLD 1492

Query: 381  IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            +EEEEKE  L  HSEK+AIAFGLIS      IR++KNLRVC DCH   K ISK+  REI+
Sbjct: 1493 VEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIV 1552

Query: 441  VRDRNRFHHFKEGKCSCKGYW 461
            +RD NRFHHF+ G CSC  YW
Sbjct: 1553 LRDANRFHHFRNGTCSCGDYW 1573



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 133/247 (53%), Gaps = 8/247 (3%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D    TA+I   +K G +D A  +     + D  +WNA++ GY +  KSR+AL  F LM 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + ++E+++ + + A   L  L QG+    Y  +      + + + ++DMY KCG+M 
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A++ F  +   +   WT++I G   NG  + +L ++ LM+ +GV+P+E TF ++++   
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211

Query: 202  VVGLVEEGRE-HFDSMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             +  +E+G++ H + ++ +Y     L+H+    LVD+Y + G + +A  V  KM ++   
Sbjct: 1212 CLTALEQGKQIHANVVKLDYS----LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KV 1266

Query: 259  GAWGALL 265
              W A+L
Sbjct: 1267 VFWNAML 1273



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 130/253 (51%), Gaps = 13/253 (5%)

Query: 21   PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            P V    ++++  +K G V  A K F   PE D I+WN M++ YAQ     EA+  F  +
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRW------AHVYIERNRLKMTVTLGTALVDMY 134
                +K ++ ++ SVL AC+     D+G +       HVY  +  +     + TAL+D+Y
Sbjct: 987  LRDGLKPDQFTLASVLRACS---TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY 1043

Query: 135  SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
            SK G M++A     G  + ++ +W +++ G   +    K+LE FSLM + G+  +E+T  
Sbjct: 1044 SKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLA 1103

Query: 195  SVLRGC-CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            + ++   C++ L +  +    +++  +  + W+     ++D+Y + G +  AL++  ++ 
Sbjct: 1104 TAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS--SGVLDMYIKCGDMPNALELFGEIS 1161

Query: 254  MKPHAGAWGALLN 266
             +P   AW  +++
Sbjct: 1162 -RPDEVAWTTMIS 1173



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 10/210 (4%)

Query: 42   ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
            A KMF      +  AWN  L  +   G+   A+  F  +    +  + V++V +LSA   
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVG 906

Query: 102  LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
               LD G   H  + ++     V +  +L++MYSK G +  A   F    E ++ +W ++
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 162  IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD--SMRRE 219
            I   A N    +++  F  + + G++P++ T  SVLR C      +EG E+F   S    
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST---GDEG-EYFTLGSQVHV 1022

Query: 220  YGIEPWLEH----YGCLVDLYGRAGRLDEA 245
            Y I+  + +       L+DLY + G++DEA
Sbjct: 1023 YAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR-----EALH 75
           PD      +I+  +KCG +  AR++FD+  +RD + WN++LA YAQ   S      E   
Sbjct: 644 PDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFR 703

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF L++     +  +++  +L  C   G +      H Y  +   ++ + +  ALV++Y 
Sbjct: 704 LFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYC 763

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           K G + +A   F  M ER+   W  ++     N   +++L  FS   ++G  P+
Sbjct: 764 KYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GY  K+     E D+    A+++   K G V  AR +FD+MPERD + WN ML  Y +  
Sbjct: 741 GYAVKIG---FELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 69  KSREALHLF 77
              EAL  F
Sbjct: 798 FQDEALRFF 806


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/436 (44%), Positives = 282/436 (64%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++++ +K G  + A  +F  + ++D +AW+AML+ +AQ G    A +LF+ M I  +K
Sbjct: 439 TALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIK 498

Query: 87  LNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            NE ++ SV+ AC    A +DQGR  H    + R    + + +ALV MYS+ GN++ A  
Sbjct: 499 PNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQI 558

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F    +R++ +W S+I G A +G   K++E F  M+ +G++ + VTF++V+ GC   GL
Sbjct: 559 VFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGL 618

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V EG+++FDSM R++ I P +EHY C+VDLY RAG+LDE + +I  MP    A  W  LL
Sbjct: 619 VVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLL 678

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++KN E+G+ ++ KL+ LE  +   YVLLSNIYA +  W     VR++M  + VKK
Sbjct: 679 GACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKK 738

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
             GCS I++  +VH F A D++HP  ++I   L  I  RLK  GY  NT+ V++DI E++
Sbjct: 739 EAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQ 798

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE  L  HSE++A+AFGLI+   G P++IVKNLRVC DCH V KM+S + +REII+RD +
Sbjct: 799 KEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCS 858

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHF  G CSC  +W
Sbjct: 859 RFHHFNGGACSCGDFW 874



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 129/264 (48%), Gaps = 1/264 (0%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG   +C  V  G    +V   T+++    KCG V    ++F+ MP+++ + W ++L G 
Sbjct: 117 LGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC 176

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           A      E + LF  M+   +  N  +  SVLSA    GALD G+  H    +   + +V
Sbjct: 177 AHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSV 236

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            +  +L++MY+KCG +  A   F  M+ R++ +W +++ GL +N    ++L+LF   +  
Sbjct: 237 FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRAT 296

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
             +  + T+ +V++ C  +  +   R+   S   ++G          L D Y + G L +
Sbjct: 297 MGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELAD 355

Query: 245 ALDVINKMPMKPHAGAWGALLNAC 268
           AL++ +      +  +W A+++ C
Sbjct: 356 ALNIFSMTTGSRNVVSWTAIISGC 379



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 11/237 (4%)

Query: 42  ARKMFDEMPERDP-IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100
           AR   DE+P RD  +  N +L  YA+ G   E L  F + +   V ++  ++  VL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 101 HLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
            +     G   H + ++    +  V+ GT+LVDMY KCG++ + ++ F GM ++NV TWT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRR 218
           S++ G A      + + LF  M+  G+ PN  TF SVL      G ++ G R H  S++ 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK- 229

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL-----LNACRM 270
            +G    +     L+++Y + G +++A  V N M  +    +W  L     LN C +
Sbjct: 230 -FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMV-SWNTLMAGLQLNECEL 284



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 7/227 (3%)

Query: 27  TAMISACAKCGDVDLARKMFD-EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           TA+  A +KCG++  A  +F      R+ ++W A+++G  Q G    A+ LF  M+   V
Sbjct: 341 TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRV 400

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             NE +  ++L A   +         H  + +   +    +GTAL+  YSK G+   A+ 
Sbjct: 401 MPNEFTYSAMLKASLSILPPQ----IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALS 456

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC-CVVG 204
            F  +++++V  W++++   A  G  E +  LF+ M   G++PNE T  SV+  C C   
Sbjct: 457 IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSA 516

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            V++GR+ F ++  +Y     +     LV +Y R G +D A  V  +
Sbjct: 517 GVDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER 562



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 102/181 (56%), Gaps = 9/181 (4%)

Query: 22  DVVC-QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D +C  +A++S  ++ G++D A+ +F+   +RD ++WN+M++GYAQ G S +A+  F  M
Sbjct: 535 DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQM 594

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +   ++++ V+ ++V+  CTH G + +G ++    +  +++  T+     +VD+YS+ G 
Sbjct: 595 EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGK 654

Query: 140 MNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLEL--FSLMKQAGVRPNEVTFVSV 196
           +++ M     M        W +++G   ++    K++EL  FS  K   + P++ +   +
Sbjct: 655 LDETMSLIRDMPFPAGAMVWRTLLGACRVH----KNVELGKFSADKLLSLEPHDSSTYVL 710

Query: 197 L 197
           L
Sbjct: 711 L 711


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 285/446 (63%), Gaps = 3/446 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  D +  T+++ + A CG  D ARK+FDEM  +D +AWN ++  YA+  ++++ L LF 
Sbjct: 439 HLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKRTKDTLWLFD 498

Query: 79  LMQI--HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            M+    +VK +EV+ + +L ACT LGALD G     Y   +     + +  +++ MY++
Sbjct: 499 EMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVRNSVITMYTR 558

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG + KA   F    +++V TW+++I GLA NG GE ++  F  M ++GV P+  TF  V
Sbjct: 559 CGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGV 618

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD-VINKMPMK 255
           L  C   GLV+EG   FD MR EY + P + HYGC+VDL GRAG LDEA + V+ +M + 
Sbjct: 619 LSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVA 678

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P A  W  LL ACR++ + ++GE     L+EL+ +  G YVLL N YA + +W++V  VR
Sbjct: 679 PDATIWRTLLGACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTYAAAGDWEKVAEVR 738

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           ++M+   ++  PGC+ +E++ E+HEF A D +HPR  EI   L EI+R L++AGYV + +
Sbjct: 739 KLMRENEIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGKLDEINRHLRIAGYVPHVS 798

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
             ++D++ E KE  L  HSEK+AIAF L+ + +  PIR+ KNLRVC DCH+ TK+ S V+
Sbjct: 799 SDLHDLDSEGKECALTYHSEKLAIAFALLVMPQRRPIRLAKNLRVCVDCHNFTKVFSGVY 858

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NR +IVRDR RFHHF  G+CSC  YW
Sbjct: 859 NRLVIVRDRTRFHHFNGGQCSCNDYW 884


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/441 (44%), Positives = 282/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+     ++   AKCG VD AR +FD +  RD + WN+M+A Y Q G+  EAL L   M 
Sbjct: 197 DMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMA 256

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            + V     ++VS +SA     AL +GR  H +  R        L T+LVDMY+K G + 
Sbjct: 257 ANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQ 316

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGC 200
            A   F  + +R + +W ++I G  M+G  +++L+LF+ M+ +A V P+ +TFV VL  C
Sbjct: 317 VARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSAC 376

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G+V+E +E F  M   Y I+P ++H+ CLVD+ G AGR +EA D+I  MPM+P +G 
Sbjct: 377 NHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGI 436

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALLN C+++KN E+GELA +KL+ELE ++ G YVLLSNIYA+S  W++   VR++M  
Sbjct: 437 WGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTN 496

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G+KK+ GCS IE+  + H F  GD +HPR  EI   L  +   +  AGY+ +T PV +D
Sbjct: 497 RGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHD 556

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           + ++EK + +  HSE++AIAFGLIS   G  + + KNLRVC DCH V K+IS++  REII
Sbjct: 557 VGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREII 616

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NR+HHF  G+CSCK YW
Sbjct: 617 IRDVNRYHHFVNGECSCKDYW 637



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD V  T ++   A CG V  AR++FD MP+R+   WN ++  YA+ G    A+ L+  M
Sbjct: 95  PDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGM 154

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
             + V+ +  +    L AC  L  L+ GR  H  +        + +   LVDMY+KCG +
Sbjct: 155 VDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCV 214

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  ++ R+   W S+I     NG   ++L L   M   GV P   T VS +   
Sbjct: 215 DDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAA 274

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                +  GRE H    RR +  +  L+    LVD+Y ++G +  A  +  ++ MK    
Sbjct: 275 ADAAALPRGRELHGFGWRRGFDRQDKLK--TSLVDMYAKSGWVQVARVLFEQL-MKRELV 331

Query: 260 AWGALL 265
           +W A++
Sbjct: 332 SWNAMI 337



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
            SVL +C    +L  GR  H  +  + L     L T LVD+Y+ CG +  A   F GM +
Sbjct: 66  TSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPK 125

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           RNV+ W  +I   A +G  E +++L+  M   GV P+  T+   L+ C  +  +E GRE 
Sbjct: 126 RNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREV 185

Query: 213 FDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            +   R  G     + + C  LVD+Y + G +D+A  V +++ ++     W +++ A
Sbjct: 186 HE---RVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSV-VWNSMIAA 238


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 273/440 (62%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V  +A++    KCG +D AR +FD+M +RD ++W  M+    + G+  E   LF  + 
Sbjct: 254 DEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLM 313

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ NE +   VL+AC    A   G+  H Y+            +ALV MYSKCGN  
Sbjct: 314 QSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTR 373

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M + ++ +WTS+I G A NG  +++L  F L+ Q+G +P++VT+V VL  C 
Sbjct: 374 VARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACT 433

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV++G E+F S++ ++G+    +HY C++DL  R+GR  EA ++I+ MP+KP    W
Sbjct: 434 HAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLW 493

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            +LL  CR++ N E+ + A++ L E+E +N   Y+ L+NIYA +  W  V NVR+ M   
Sbjct: 494 ASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNM 553

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+ K PG S IE+ R+VH F  GD +HP+ ++I   LGE+S+++K  GYV +TN V++D+
Sbjct: 554 GIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDV 613

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE+KE  L  HSEK+A+ FG+IS   G PI++ KNLR C DCH   K ISK+  R+I V
Sbjct: 614 EEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITV 673

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F++G CSCK YW
Sbjct: 674 RDSNRFHCFEDGSCSCKDYW 693



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 144/266 (54%), Gaps = 3/266 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   Q +FD +   D+     MI   AK G ++ ARK+FDEMP+RD  +WNA 
Sbjct: 131 MYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAA 190

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY    + REAL LF +MQ H+    N+ ++ S L+A   +  L  G+  H Y+ R  
Sbjct: 191 ISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTE 250

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L +   + +AL+D+Y KCG++++A   F  MK+R+V +WT++I     +G  E+   LF 
Sbjct: 251 LNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFR 310

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            + Q+GVRPNE TF  VL  C        G+E    M    G +P       LV +Y + 
Sbjct: 311 DLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA-GYDPGSFAISALVHMYSKC 369

Query: 240 GRLDEALDVINKMPMKPHAGAWGALL 265
           G    A  V N+M  +P   +W +L+
Sbjct: 370 GNTRVARRVFNEM-HQPDLVSWTSLI 394



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 112/206 (54%), Gaps = 12/206 (5%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++P     +A++   +KCG+  +AR++F+EM + D ++W +++ GYAQ G+  EALH F 
Sbjct: 352 YDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFE 411

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           L+     K ++V+ V VLSACTH G +D+G  + H   E++ L  T      ++D+ ++ 
Sbjct: 412 LLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARS 471

Query: 138 GNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRP-NEVTF 193
           G   +A +    M  + + + W S++GG  ++G    +LEL     +A   + P N  T+
Sbjct: 472 GRFKEAENIIDNMPVKPDKFLWASLLGGCRIHG----NLELAKRAAKALYEIEPENPATY 527

Query: 194 VSVLRGCCVVGL---VEEGREHFDSM 216
           +++       GL   V   R+  D+M
Sbjct: 528 ITLANIYANAGLWSEVANVRKDMDNM 553



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 39/254 (15%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q  + +EA+ L H     D + +     ++++AC    AL+ GR  H + + +     V 
Sbjct: 67  QQKRVKEAVELLHRT---DHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVF 123

Query: 126 LGTALVDMYSKCGN-------------------------------MNKAMDFFWGMKERN 154
           +   L+DMY+KCG+                               + +A   F  M +R+
Sbjct: 124 ISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRD 183

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
            ++W + I G   +    ++LELF +M +      N+ T  S L     +  +  G+E H
Sbjct: 184 NFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIH 243

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
              +R E  ++  +  +  L+DLYG+ G LDEA  + ++M  +    +W  +++ C    
Sbjct: 244 GYLIRTELNLDEVV--WSALLDLYGKCGSLDEARGIFDQMKDRD-VVSWTTMIHRCFEDG 300

Query: 273 NTEMGELASRKLVE 286
             E G L  R L++
Sbjct: 301 RREEGFLLFRDLMQ 314


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/444 (42%), Positives = 276/444 (62%), Gaps = 8/444 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   + ++    KCG++  ARK+F+++P  D +AW  +++G  + G+  +AL  +H M+
Sbjct: 534 DLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMR 593

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  V+ +E +  +++ AC+ L AL+QG+  H  I +        + T+LVDMY+KCGN+ 
Sbjct: 594 LAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIE 653

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  R+V  W ++I GLA +G  E++L  F+ MK  GV P+ VTF+ VL  C 
Sbjct: 654 DAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL  +  ++FDSM++ YG+EP +EHY CLVD   RAG + EA  V++ MP +  A  +
Sbjct: 714 HSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMY 773

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LLNACR+  + E GE  + KL  ++  +  AYVLLSNIYA +  W+  ++ R +MK  
Sbjct: 774 RTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRV 833

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANTNPV 377
            VKK PG S I++  +VH F AGD +H      YN++E ++    +R+K  GYV +T   
Sbjct: 834 NVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVM----KRIKEEGYVPDTEFA 889

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           + DIEEE+KE  L  HSEK+AIA+GL+       +R++KNLRVC DCH+  K IS VF R
Sbjct: 890 LVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQR 949

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EI++RD NRFHHF+ G CSC  YW
Sbjct: 950 EIVLRDANRFHHFRSGICSCGDYW 973



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 4/255 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    TA+I   +K G ++ A  +F      D  +WNAM+ G+      REAL LF LM 
Sbjct: 433 DSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMH 492

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K ++++  +   A   L  L QG+  H  + + R    + + + ++DMY KCG M 
Sbjct: 493 ERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMK 552

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +   +   WT+VI G   NG  E++L  +  M+ AGV+P+E TF ++++ C 
Sbjct: 553 SARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACS 612

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
           ++  +E+G++ H + M+     +P++     LVD+Y + G +++A  +  +M  +  A  
Sbjct: 613 LLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTRSVA-L 669

Query: 261 WGALLNACRMYKNTE 275
           W A++     + N E
Sbjct: 670 WNAMIVGLAQHGNAE 684



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 129/248 (52%), Gaps = 5/248 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V    + I+   K G V+ AR+MF +M E D I+WN +++G A+ G    +L LF  +  
Sbjct: 332 VSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLR 391

Query: 83  HDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +  ++ ++ SVL AC+ L  +   GR  H    +  + +   + TAL+D+YSK G M 
Sbjct: 392 SGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKME 451

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC- 200
           +A   F      ++ +W +++ G  ++    ++L LFSLM + G + +++TF +  +   
Sbjct: 452 EAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAG 511

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
           C+V L +  + H   ++  +  + ++     ++D+Y + G +  A  V N++P  P   A
Sbjct: 512 CLVRLQQGKQIHAVVIKMRFHYDLFV--ISGILDMYLKCGEMKSARKVFNQIP-SPDDVA 568

Query: 261 WGALLNAC 268
           W  +++ C
Sbjct: 569 WTTVISGC 576



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 10/209 (4%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A K+F    + D   WN  L+ Y Q G+  EA+  F  M    V  + ++ + +LS    
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L  L+ G+  H  + R      V++  + ++MY K G++N A   F  MKE ++ +W +V
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE----GRE-HFDSM 216
           I G A +G  E SL LF  + ++G+ P++ T  SVLR C     +EE    GR+ H  ++
Sbjct: 370 ISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCAL 426

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           +    ++ ++     L+D+Y + G+++EA
Sbjct: 427 KAGIVLDSFVS--TALIDVYSKGGKMEEA 453



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 8/187 (4%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCG------KSRE 72
           PD      +I+  AKCG +  ARK+FD  P+  RD + +NA+LA YA  G      K+ E
Sbjct: 46  PDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHE 105

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A H+F L++   +     ++  +   C   G+         Y  +  L+  V +  ALV+
Sbjct: 106 AFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVN 165

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           +Y+K   + +A   F  M  R+V  W  ++      GAG++ L LFS   ++G+RP+ V+
Sbjct: 166 IYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVS 225

Query: 193 FVSVLRG 199
             ++L G
Sbjct: 226 VRTILMG 232



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGL 165
           G+  H  I  + L     +   L+ MY+KCG++  A   F      +R++ T+ +++   
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 166 AMNG------AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           A  G         ++  +F L++Q+ +     T   + + C + G      E       +
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYG-SPSASEALQGYAVK 150

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            G++  +   G LV++Y +  R+ EA  + ++MP++     W  ++ A
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRD-VVLWNVMMKA 197


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/443 (44%), Positives = 281/443 (63%), Gaps = 3/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    A++   AKCG V  AR +FD++ +RD + WN+MLA YAQ G   E+L L   
Sbjct: 191 ERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCE 250

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+  E ++V+V+S+   +  L  GR  H +  R+  +    + TAL+DMY+KCG+
Sbjct: 251 MAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGS 310

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLR 198
           +  A   F  ++E+ V +W ++I G AM+G   ++L+LF  +MK+A  +P+ +TFV  L 
Sbjct: 311 VKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA--QPDHITFVGALA 368

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C    L++EGR  ++ M R+  I P +EHY C+VDL G  G+LDEA D+I +M + P +
Sbjct: 369 ACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDS 428

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
           G WGALLN+C+ + N E+ E+A  KL+ELE  + G YV+L+N+YA+S  W+ V  +RQ+M
Sbjct: 429 GVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLM 488

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
             KG+KK   CS IEV  +V+ F +GD +HP    I   L  +   ++ AGYV +T  V 
Sbjct: 489 IDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVF 548

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+EE+EK D +C HSE++AIAFGLIS   G  + I KNLR+C DCH   K ISK+  RE
Sbjct: 549 HDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITERE 608

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I VRD NR+HHF+ G CSC  YW
Sbjct: 609 ITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 2/245 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +++  + C  +  A  +FD++P+ +   WN ++  YA  G    A+ L+H M  + +K
Sbjct: 97  TKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLK 156

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  ++  VL AC+ L  + +GR  H  + R+  +  V +G ALVDMY+KCG +  A   
Sbjct: 157 PDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHV 216

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + +R+   W S++   A NG  ++SL L   M   GVRP E T V+V+     +  +
Sbjct: 217 FDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACL 276

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             GRE        +G +   +    L+D+Y + G +  A  +  ++  K    +W A++ 
Sbjct: 277 PHGRE-IHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREK-RVVSWNAIIT 334

Query: 267 ACRMY 271
              M+
Sbjct: 335 GYAMH 339



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 2/180 (1%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N     S+L +C    AL+ G+  H  + +  +   + L T LV+ YS C ++  A   F
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             + + N++ W  +I   A NG  E ++ L+  M + G++P+  T   VL+ C  +  + 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EGR   + + R  G E  +     LVD+Y + G + +A  V +K+ +   A  W ++L A
Sbjct: 177 EGRVIHERVIRS-GWERDVFVGAALVDMYAKCGCVVDARHVFDKI-VDRDAVLWNSMLAA 234


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/450 (45%), Positives = 285/450 (63%), Gaps = 10/450 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV    +++   A C  +D A+ +FD M ER  ++WN ++  + + G+   AL+LF  
Sbjct: 160 DSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGE 219

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI----ERNRLKMTVTLGTALVDMYS 135
           MQ    + +  ++ S+ +AC  +G+L  G WAHV++    + +R+   V L T+LVDMY 
Sbjct: 220 MQKF-FEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVN-DVLLNTSLVDMYC 277

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFV 194
           KCG++  A+  F  M +R+V +W S+I G + +G    +LE F  M +   + PN +TFV
Sbjct: 278 KCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFV 337

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            VL  C   GLV EGR +FD M  EY I+P LEHYGCLVDL  RAG +DEALDV++ MPM
Sbjct: 338 GVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPM 397

Query: 255 KPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKN-HGAYVLLSNIYAESKNWDRVI 312
           +P    W +LL+AC +     E+ E  +R+++E E     G YVLLS +YA +  W+ V 
Sbjct: 398 RPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVG 457

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR++M  KGV K PGCS IE+D   HEFFAGD +HP+  EI   L  I  R++  GY  
Sbjct: 458 MVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSP 517

Query: 373 NTNPV-MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
           +++   M D   + K+ +L  HSE++AIAFGL+  K G+PIRI KNLRVC +CH VTK+I
Sbjct: 518 DSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLI 577

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           S+VFNREIIVRDR RFHHFK+G CSC  YW
Sbjct: 578 SRVFNREIIVRDRIRFHHFKDGACSCMDYW 607



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +  K FD     DV+  T+++    KCG ++LA ++F  MP+RD  +WN+M+ G++  G+
Sbjct: 253 FLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGE 312

Query: 70  SREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLG 127
              AL  F  M +   +  N ++ V VLSAC H G + +G R+  V +   ++K  +   
Sbjct: 313 VAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHY 372

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAG 171
             LVD+ ++ G +++A+D    M  R ++  W S++       AG
Sbjct: 373 GCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAG 417



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 16/256 (6%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLF 77
           H P+     + I   +   D+  A ++F ++   +   WNA++   A+   + + A+ L+
Sbjct: 56  HHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALY 115

Query: 78  H-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           H +++   V  ++ +   VL AC +L AL +G   H  I +      V +  +LV  Y+ 
Sbjct: 116 HRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYAT 175

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C  ++ A   F  M ER++ +W  VI      G  + +L LF  M Q    P+  T  S+
Sbjct: 176 CDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSI 234

Query: 197 LRGCCVVGLVEEGR-------EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
              C  +G +  G        + FD+ R    +   L +   LVD+Y + G L+ AL + 
Sbjct: 235 ANACAGMGSLSLGMWAHVFLLKKFDADR----VNDVLLNTS-LVDMYCKCGSLELALQLF 289

Query: 250 NKMPMKPHAGAWGALL 265
           ++MP K    +W +++
Sbjct: 290 HRMP-KRDVTSWNSMI 304


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 280/437 (64%), Gaps = 2/437 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +  +I+  A+CGD   AR  F        +++NAM+A   +  +  EAL LF  MQ   +
Sbjct: 171 RPTLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGL 230

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
               V+++SVLSAC  LGAL  GRW H Y+ +  L   V + TALVDMY+KCG++  A+ 
Sbjct: 231 NPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIA 290

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F GM+ R+   W+ +I   A +G G +++ LF  MK+ G++P+++TF+ +L  C   GL
Sbjct: 291 VFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGL 350

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V EG  +FD M+ ++GI P ++HYGC+ DL  R+G+L+ A   I+++P+ P    W  LL
Sbjct: 351 VSEGLRYFDDMK-DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLL 409

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           +AC  + + E+G+    +++EL+  + G YV+ SN+ A +  W+ +  VR++M  KGV K
Sbjct: 410 SACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVK 469

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY-DIEEE 384
           +PGCS IE+D  VHEFFAGD  HP+  E   M+ E+  +LKL GY+ +T+ V + ++ EE
Sbjct: 470 VPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEE 529

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           EK  +L  HSEK+AIAFGL++   G  +R+VKNLRVC DCH + K +S VFNR II+RD 
Sbjct: 530 EKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDL 589

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFHHF+ G CSC  YW
Sbjct: 590 NRFHHFERGICSCGDYW 606



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 31/283 (10%)

Query: 27  TAMISACAKCG----DVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREA-----LHL 76
           T +++ C   G     +  AR++FD + +  D + +N +L GYA+   S  +     + +
Sbjct: 61  TRLLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRV 120

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA------- 129
           F  M    V  +  + VS+L AC    A + GR AH         + V LG A       
Sbjct: 121 FVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHA--------VAVKLGAAGHDYVRP 172

Query: 130 -LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
            L++MY++CG+   A   F       V ++ ++I     +    ++L LF  M+  G+ P
Sbjct: 173 TLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNP 232

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
             VT +SVL  C ++G ++ GR   D +R+  G+   ++    LVD+Y + G L++A+ V
Sbjct: 233 TPVTVISVLSACALLGALQLGRWLHDYVRK-LGLGSLVKVSTALVDMYAKCGSLEDAIAV 291

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
              M  +    AW  ++ A   Y N   G  A     E++ + 
Sbjct: 292 FQGMESRDRQ-AWSVMIVA---YANHGYGREAISLFEEMKKQG 330



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 65/125 (52%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA++   AKCG ++ A  +F  M  RD  AW+ M+  YA  G  REA+ LF  M+ 
Sbjct: 269 VKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKK 328

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K ++++ + +L AC+H G + +G      ++ + +   +     + D+ ++ G + +
Sbjct: 329 QGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLER 388

Query: 143 AMDFF 147
           A  F 
Sbjct: 389 AYKFI 393


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/438 (43%), Positives = 276/438 (63%), Gaps = 5/438 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-- 84
           +I   AKC  VD AR MFD +   ERD + W  M+ GY+Q G + +AL L   M   D  
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK-MTVTLGTALVDMYSKCGNMNKA 143
            + N  ++   L AC  L AL  G+  H Y  RN+   + + +   L+DMY+KCG+++ A
Sbjct: 473 TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA 532

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M  +N  TWTS++ G  M+G GE++L +F  M++ G + + VT + VL  C   
Sbjct: 533 RLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHS 592

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G++++G E+F+ M+  +G+ P  EHY CLVDL GRAGRL+ AL +I +MPM+P    W A
Sbjct: 593 GMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVA 652

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
            L+ CR++   E+GE A+ K+ EL + + G+Y LLSN+YA +  W  V  +R +M+ KGV
Sbjct: 653 FLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGV 712

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           KK PGCS +E  +    FF GD+THP   EI  +L +  +R+K  GYV  T   ++D+++
Sbjct: 713 KKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDD 772

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           EEK+D L +HSEK+A+A+G+++  +G  IRI KNLRVC DCH     +S++ + +II+RD
Sbjct: 773 EEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRD 832

Query: 444 RNRFHHFKEGKCSCKGYW 461
            +RFHHFK G CSCKGYW
Sbjct: 833 SSRFHHFKNGSCSCKGYW 850



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 18/287 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MYA+ G +     VF  +   DVV   AM++  ++ G  + A ++F++M E     D + 
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-- 114
           W+A ++GYAQ G   EAL +   M    +K NEV+++SVLS C  +GAL  G+  H Y  
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 115 -----IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
                + +N       +   L+DMY+KC  ++ A   F  +  KER+V TWT +IGG + 
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452

Query: 168 NGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
           +G   K+LEL S M  +    RPN  T    L  C  +  +  G++ H  ++R +    P
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            L    CL+D+Y + G + +A  V + M M  +   W +L+    M+
Sbjct: 513 -LFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMH 557



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 134/278 (48%), Gaps = 46/278 (16%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    A+++  ++C  +  ARK+FDEM   D ++WN+++  YA+ GK + AL +F  M 
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220

Query: 82  IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                + + +++V+VL  C  LG    G+  H +   + +   + +G  LVDMY+KCG M
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ----------------- 183
           ++A   F  M  ++V +W +++ G +  G  E ++ LF  M++                 
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340

Query: 184 ------------------AGVRPNEVTFVSVLRGCCVVGLVEEGRE--------HFDSMR 217
                             +G++PNEVT +SVL GC  VG +  G+E          D  +
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             +G E  + +   L+D+Y +  ++D A  + + +  K
Sbjct: 401 NGHGDENMVINQ--LIDMYAKCKKVDTARAMFDSLSPK 436



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           +IS     G +  A  +    P  D     WN+++  Y   G + + L+LF LM      
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +   V  AC  + ++  G  AH           V +G ALV MYS+C +++ A   
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGL 205
           F  M   +V +W S+I   A  G  + +LE+FS M  + G RP+ +T V+VL  C  +G 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
              G++ H  ++  E     ++ +  CLVD+Y + G +DEA  V + M +K    +W A+
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGN--CLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAM 301

Query: 265 L 265
           +
Sbjct: 302 V 302


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/442 (42%), Positives = 280/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + ++    A++   AKCG ++ A  +F EMP +D I+WN M+ GY++     EAL LF  
Sbjct: 131 QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGD 190

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M + ++K +  ++  +L AC  L +LD+G+  H +I RN       +  ALVDMY KCG 
Sbjct: 191 M-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGV 249

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
              A   F  +  +++ TWT +I G  M+G G  ++  F+ M+QAG+ P+EV+F+S+L  
Sbjct: 250 PVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYA 309

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL++EG   F+ M+ E  ++P LEHY C+VDL  R+G+L  A   I  MP++P A 
Sbjct: 310 CSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDAT 369

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+ CR++ + ++ E  +  + ELE +N G YVLL+N YAE++ W+ V  +RQ + 
Sbjct: 370 IWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIG 429

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+KK PGCS IEV  +VH F AG+ +HP+  +IEV+L  +  ++K  GY   T   + 
Sbjct: 430 RRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALI 489

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           + +  +KE  LC HSEK+A+AFG+++L     IR+ KNLRVC DCH++ K ISK   REI
Sbjct: 490 NADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREI 549

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RD NRFHHFK+G C C+G+W
Sbjct: 550 VLRDSNRFHHFKDGVCCCRGFW 571



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 5/239 (2%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           +H     C T ++   AKCG +D A  +FD M  R  + W +++A YA+ G S EA+ LF
Sbjct: 29  VHWKTTFCNT-LLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLF 87

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           H M    V  +  ++ +VL AC   G+L+ G+  H YI  N ++  + +  AL+DMY+KC
Sbjct: 88  HEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKC 147

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+M  A   F  M  +++ +W ++IGG + N    ++L LF  M    ++P+  T   +L
Sbjct: 148 GSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACIL 206

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             C  +  ++ G+E H   +R  +  +  + +   LVD+Y + G    A  + + +P K
Sbjct: 207 PACASLASLDRGKEVHGHILRNGFFSDQQVAN--ALVDMYVKCGVPVLARLLFDMIPTK 263



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 1/164 (0%)

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           MVS+L AC + G +  GR  H    +  +    T    L+DMY+KCG ++ A+  F  M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
            R V TWTS+I   A  G  ++++ LF  M + GV P+  T  +VL  C   G +E G++
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             + + RE  ++  +     L+D+Y + G +++A  V  +MP+K
Sbjct: 121 VHNYI-RENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK 163


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/449 (42%), Positives = 295/449 (65%), Gaps = 1/449 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    E DV+ Q ++I+   KCG++  A  +F+ M E+   +W+A++  +A      E 
Sbjct: 124 VFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNEC 183

Query: 74  LHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           L L   M      ++ E ++V+VLSACTHLG+ D G+  H  + RN  ++ V + T+L+D
Sbjct: 184 LMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLID 243

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY K G + K +  F  M E+N Y++T +I GLA++G G+++L++FS M + G+ P++V 
Sbjct: 244 MYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVV 303

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +V V   C   GLVEEG + F SM+ E+ IEP ++HYGC+VDL GR G L EA ++I  M
Sbjct: 304 YVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSM 363

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
            +KP+   W +LL+AC+++ N E+G++A+  L  L   N G Y++L+N+YA+++ WD V 
Sbjct: 364 SIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVA 423

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            +R  +  + + + PG S+IE  R+V++F + D++ P++N I  M+ ++  +LK  GY+ 
Sbjct: 424 KIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIP 483

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           +T+ V+ D+++EEK++ L  HS+K+AIAFGLI   EG P+RI +NLR+C DCH  TK IS
Sbjct: 484 DTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYIS 543

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ++ REI VRDR RFHHFK G CSCK YW
Sbjct: 544 MIYEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 4/237 (1%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D  C + +++ CA  K G +D A  +F ++ E     +N M+ G     K  EAL L+  
Sbjct: 29  DTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVD 88

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+ ++ +   VL AC+ LG +D+G   H ++ +  L+  V +  +L++MY KCG 
Sbjct: 89  MIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGE 148

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLR 198
           +  A D F GM E++V +W+++IG  A      + L L   M   G  R  E T V+VL 
Sbjct: 149 IKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLS 208

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +G  + G+     + R    E  +     L+D+Y ++G L++ L V   M  K
Sbjct: 209 ACTHLGSPDLGKCIHGILLRNIS-ELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEK 264



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 23/147 (15%)

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           +K G+M+ A   F  + E + + + ++I G   +   E++L L+  M + GV P++ T+ 
Sbjct: 43  TKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYP 102

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            VL+ C ++G+V+EG                       + ++G   ++    DVI +  +
Sbjct: 103 FVLKACSLLGVVDEG-----------------------IQVHGHVFKMGLEGDVIVQNSL 139

Query: 255 KPHAGAWGALLNACRMYKNTEMGELAS 281
               G  G + NAC ++   +   +AS
Sbjct: 140 INMYGKCGEIKNACDVFNGMDEKSVAS 166


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/443 (40%), Positives = 277/443 (62%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           HE D+    A++   AKC D+D + K+F  + + + ++WN ++ G++Q G   EAL +F 
Sbjct: 376 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 435

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ   +   +V+  SVL AC    ++      H  IE++       +G +L+D Y+KCG
Sbjct: 436 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCG 495

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A+  F  + ER++ +W ++I G A++G    +LELF  M ++ V  N++TFV++L 
Sbjct: 496 YIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 555

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            CC  GLV  G   FDSMR ++GI+P +EHY C+V L GRAGRL++AL  I  +P  P A
Sbjct: 556 VCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSA 615

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W ALL++C ++KN  +G  ++ K++E+E ++   YVLLSN+YA + + D+V  +R+ M
Sbjct: 616 MVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSM 675

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           +  GV+K+PG S +E+  E+H F  G   HP    I  ML  ++ +    GY+ + N V+
Sbjct: 676 RNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVL 735

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+++E+K   L  HSE++A+A+GL+    G PIRI+KNLR C DCH    +ISK+  RE
Sbjct: 736 HDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKRE 795

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHF++GKCSC  YW
Sbjct: 796 IIVRDINRFHHFEDGKCSCGDYW 818



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 131/240 (54%), Gaps = 4/240 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++   AKCGD+  AR  F+ +P  D I  + M++ YAQ  ++ +A  LF  +    V  
Sbjct: 284 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 343

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           NE S+ SVL ACT++  LD G+  H +  +   +  + +G AL+D Y+KC +M+ ++  F
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 403

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +++ N  +W +++ G + +G GE++L +F  M+ A +   +VT+ SVLR C     + 
Sbjct: 404 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 463

Query: 208 E-GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G+ H    +  +  +  + +   L+D Y + G + +AL V   + M+    +W A+++
Sbjct: 464 HAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIIS 520



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 26/240 (10%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+   D+ C   +++   K G +  AR++FD MPER+ +++  ++  +AQ G    A  L
Sbjct: 90  GVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAAL 149

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  ++    ++N+  + ++L     + A       H    +        +G+ L+D YS 
Sbjct: 150 FRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSL 209

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL---ELFSLMKQAGVRPNEVTF 193
           C  ++ A   F G+  ++   WT+++   + N   E +    +  SL+  +  R      
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQG---- 265

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
              + GC +  L +               EP +   G L+D+Y + G + +A      +P
Sbjct: 266 ---IHGCAIKTLNDT--------------EPHVG--GALLDMYAKCGDIKDARLAFEMIP 306



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 22/235 (9%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+ +    + +I A + C  V  A  +F+ +  +D + W AM++ Y++      A   F 
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENA---FR 249

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
             Q         S++++  +C   G        H    +        +G AL+DMY+KCG
Sbjct: 250 CAQ-------SCSLLAI--SCARQGI-------HGCAIKTLNDTEPHVGGALLDMYAKCG 293

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  +   +V   + +I   A +   E++ ELF  + ++ V PNE +  SVL+
Sbjct: 294 DIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQ 353

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            C  +  ++ G++ H  +++   G E  L     L+D Y +   +D +L + + +
Sbjct: 354 ACTNMVQLDFGKQIHNHAIK--IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 406


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/442 (43%), Positives = 286/442 (64%), Gaps = 3/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EPD+V   ++ +  AK G V++AR  F+ M + + I WNAM++GYA  G   EA+ LF  
Sbjct: 220 EPDIV--ISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFRE 277

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   +++++ ++M S + A   +G+L+  RW   YI ++  +    + T L+DMY+KCG+
Sbjct: 278 MITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGS 337

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + +++V  W+ +I G  ++G G++++ L++ MKQAGV PN+ TF+ +L  
Sbjct: 338 IYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTA 397

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG E F  M  ++GIEP  +HY C+VDL GRAG L++A D I  MP+KP   
Sbjct: 398 CKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVS 456

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+AC++++   +GE+A+ +L  L+  N G YV LSN+YA +  W RV NVR +M 
Sbjct: 457 VWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMT 516

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K  G S IE++  +  F  GD +HP+  EI   L  + +RLK AGYV +   V++
Sbjct: 517 QKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLH 576

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+  EE E+TLC HSE++A+A+G+IS   G  +RI KNLR C +CH   K+ISK+ +REI
Sbjct: 577 DLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREI 636

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD  RFHHFK+G CSC  +W
Sbjct: 637 IIRDAKRFHHFKDGVCSCGDFW 658



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 137/285 (48%), Gaps = 12/285 (4%)

Query: 10  YCQKVFDGIHEPDVVCQTAMI---SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ 66
           Y Q +  G+H+    C+  MI   +AC   GDV+ A K F E+ E D + WNA++ GY Q
Sbjct: 7   YVQLIVSGLHK----CRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQ 62

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
                  + ++  MQI  V  N  + + VL AC        G+  H    +      V +
Sbjct: 63  KNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFV 122

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
             +LV MY+K G ++ A   F  + +R V +WTS+I G   NG   ++L +F  M+Q  V
Sbjct: 123 QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 182

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           +P+ +  VSV+     V  + +G+     +  + G+E   +    L  +Y + G ++ A 
Sbjct: 183 KPDWIALVSVMTAYTNVEDLGQGKS-IHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVAR 241

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
              N+M  KP+   W A+++    Y N   GE A +   E+ TKN
Sbjct: 242 FFFNRME-KPNLILWNAMISG---YANNGYGEEAIKLFREMITKN 282



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 133/236 (56%), Gaps = 5/236 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V  Q +++S  AK G +  AR +FD++ +R  ++W ++++GY Q G   EAL++F  M+
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 178

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +VK + +++VSV++A T++  L QG+  H  + +  L+    +  +L  MY+K G + 
Sbjct: 179 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 238

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A  FF  M++ N+  W ++I G A NG GE++++LF  M    +R + +T  S +    
Sbjct: 239 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 298

Query: 202 VVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            VG +E  R  + + S + EY  + ++     L+D+Y + G +  A  V +++  K
Sbjct: 299 QVGSLELARWLDGYIS-KSEYRDDTFVN--TGLIDMYAKCGSIYLARCVFDRVADK 351



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +  D    T +I   AKCG + LAR +FD + ++D + W+ M+ GY   G  +EA+ L++
Sbjct: 318 YRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 377

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V  N+ + + +L+AC + G + +G      +  + ++      + +VD+  + G
Sbjct: 378 EMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAG 437

Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGG 164
            +N+A DF   M  +  V  W +++  
Sbjct: 438 YLNQAYDFIMSMPIKPGVSVWGALLSA 464


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 288/445 (64%), Gaps = 2/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E      TA++ A  K G VD A K+F  +  +D +AW+AMLAGYAQ G++  A+ +F 
Sbjct: 428 YERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFS 487

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            +    VK NE +  S+L+ C    A + QG+  H +  ++RL  ++ + +AL+ MY+K 
Sbjct: 488 ELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 547

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A + F   +E+++ +W S+I G A +G   K+L++F  MK+  V+ + VTF+ V 
Sbjct: 548 GHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVF 607

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLVEEG ++FD M R+  I P  EH  C+VDLY RAG+L++A+ VI+ MP    
Sbjct: 608 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAG 667

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           +  W  +L ACR++K TE+G LA+ K++ +  ++  AYVLLSN+YAES +W     VR++
Sbjct: 668 STIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKL 727

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M  + VKK PG S IEV  + + F AGD +HP  ++I + L ++S RLK  GY  +T+ V
Sbjct: 728 MNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 787

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           + DI++E KE  L +HSE++AIAFGLI+  +G P+ I+KNLRVC DCH V K+I+K+  R
Sbjct: 788 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEER 847

Query: 438 EIIVRDRNRFHHF-KEGKCSCKGYW 461
           EI+VRD NRFHHF  +G CSC  +W
Sbjct: 848 EIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 130/260 (50%), Gaps = 13/260 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +  +    ++I+   KCG+V  AR +FD+   +  + WN+M++GYA  G   EAL +F+ 
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+++ V+L+E S  S++  C +L  L      H  + +        + TAL+  YSKC  
Sbjct: 290 MRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMA 349

Query: 140 MNKAMDFFWGMKER----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           M  A+  F   KE     NV +WT++I G   N   E+++ LFS MK+ GVRPNE T+  
Sbjct: 350 MLDALRLF---KETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSV 406

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L    V+   E    H   ++  Y  E        L+D Y + G++DEA  V + +  K
Sbjct: 407 ILTALPVISPSE---VHAQVVKTNY--ERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNK 461

Query: 256 PHAGAWGALLNACRMYKNTE 275
               AW A+L        TE
Sbjct: 462 DIV-AWSAMLAGYAQAGETE 480



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 1/192 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ +  G  + DV   T+++    K  +    R +FDEM ER+ + W  +++GYA+   
Sbjct: 120 HCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSL 178

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + E L LF  MQ    + N  +  + L      G   +G   H  + +N L  T+ +  +
Sbjct: 179 NEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 238

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+++Y KCGN+ KA   F   + ++V TW S+I G A NG   ++L +F  M+   VR +
Sbjct: 239 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLS 298

Query: 190 EVTFVSVLRGCC 201
           E +F S+++ C 
Sbjct: 299 ESSFASIIKLCA 310



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 125/246 (50%), Gaps = 6/246 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D   +TA++ A +KC  +  A ++F E     + ++W AM++G+ Q     EA+ LF  M
Sbjct: 333 DQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEM 392

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   V+ NE +   +L+A   +   +     H  + +   + + T+GTAL+D Y K G +
Sbjct: 393 KRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKV 448

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           ++A   F G+  +++  W++++ G A  G  E ++++FS + + GV+PNE TF S+L  C
Sbjct: 449 DEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVC 508

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
                     + F     +  ++  L     L+ +Y + G ++ A +V  +   K    +
Sbjct: 509 AATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLV-S 567

Query: 261 WGALLN 266
           W ++++
Sbjct: 568 WNSMIS 573



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 2/225 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +FD+ P+RD  ++ ++L G+++ G+++EA  LF  +Q   ++++     SVL     
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L     GR  H    +      V++GT+LVD Y K  N     + F  MKERNV TWT++
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I G A N   E+ L LF  M+  G +PN  TF + L      G+   G +   ++  + G
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNG 228

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           ++  +     L++LY + G + +A  + +K  +K     W ++++
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVV-TWNSMIS 272


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/443 (46%), Positives = 290/443 (65%), Gaps = 4/443 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   QTA++   +KCG +D+ARK+FD + +R  +AWNAM++GY Q G +  A+ ++  M+
Sbjct: 142 DRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMR 201

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +     +  + V+ LSAC   GALD G      I   R++M V LG ALV+MY++CG +N
Sbjct: 202 VAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGLVN 261

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA ++F  ++ERNV TWTS+I G  M+G G ++++LF LM+Q G  PN+VTFV+VL  C 
Sbjct: 262 KAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACA 321

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGA 260
             GLV +GR+ F SM+  YG+ P  EHY  +VD+YGRAG LD+A+  I + +P +P    
Sbjct: 322 HAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEV 381

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W A+L AC+M+KN  +G   + +L+ LE +N    VLLSNIYA S   + V  VR  M  
Sbjct: 382 WTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNTMIK 441

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + +KK  G S+IE+    H F  G+++HP+  EI   L ++  R+  AGY+  T+ V+++
Sbjct: 442 RRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIHRITDAGYMPETDSVLHE 501

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEG--VPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +EEEE+E  L  H EK+A+AFGL+ +  G   PIRI+KNLR+C DCH   K +S V NRE
Sbjct: 502 LEEEEREFALRYHGEKLAVAFGLM-MTSGCTAPIRIIKNLRICGDCHLAIKYMSAVENRE 560

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD +RFHHFK GKCSC+ YW
Sbjct: 561 IIVRDMHRFHHFKAGKCSCQEYW 583



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 3/152 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +VV   A+++  A+CG V+ AR+ FD + ER+ + W +M+AGY   G   EA+ LF L
Sbjct: 241 EMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDL 300

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCG 138
           M+      N+V+ V+VLSAC H G +  GR A   ++    L        ++VDMY + G
Sbjct: 301 MRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAG 360

Query: 139 NMNKAMDFFWGM--KERNVYTWTSVIGGLAMN 168
            ++ AM F       E     WT+++G   M+
Sbjct: 361 LLDDAMQFIHDSIPGEPGPEVWTAMLGACKMH 392


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/449 (41%), Positives = 283/449 (63%), Gaps = 9/449 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ-------CGKSRE-- 72
           D V   A++   A+CG +   RK+FD +   D  AWNA+L+ YA+       C  S    
Sbjct: 390 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADA 449

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
            L +F  M    +K NE+++V+V+ AC  LGA+  G WAH Y  + RL +   + TALV+
Sbjct: 450 ILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVE 509

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+ CG ++ A   F    +R+   + +++ GLA++G G  +L LF  M   GV  + VT
Sbjct: 510 MYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVT 569

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            +SV+  C   GLV+EG ++FD M  E+GIEP +EHYGC+VD+  RAGRL++A  +I+ M
Sbjct: 570 VLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGM 629

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P+ P+A  + +L+ AC ++   E+G+    +L+ LE  + G +VL+SN YA +  WD   
Sbjct: 630 PIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAK 689

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
             R+ MK+ G+ K PG S ++++  +HEF  GD+THP   EI  M+ +I  RL   G+ +
Sbjct: 690 KARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRS 749

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           +T+  ++D+EEE+K D L  HSE++AIAF LI+   G PIRI+KNLRVC DCH+  K++S
Sbjct: 750 STSSALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVS 809

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +V+ REI++RDR RFHHF++G CSC  +W
Sbjct: 810 RVYGREIVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA-------- 166
           I  N       LG AL+D++++CG +      F  +   ++  W +++   A        
Sbjct: 382 ILNNETSCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVA 441

Query: 167 -MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEP 224
             + A +  LE+F  M    ++PNE+T V+V+  C  +G V  G   H  +++R   +  
Sbjct: 442 CASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNC 501

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVI 249
            +     LV++Y   GRLD A  V 
Sbjct: 502 IVA--TALVEMYAGCGRLDLAEQVF 524


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/448 (45%), Positives = 283/448 (63%), Gaps = 13/448 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T ++ + AKCGD+  AR++FDEM  RD   WNA+LAG AQ  +   AL LF  + 
Sbjct: 154 DVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGTEPNLALVLFRRLA 213

Query: 82  IHDVKL------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
               +L      NEV++V+ LSAC  LGAL  G  AH +         V +  AL+DMYS
Sbjct: 214 GSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVRVCNALIDMYS 273

Query: 136 KCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           KCG++++A++ F  +K  +R + ++ + I  L+M+G GE +L+LF  M  A + P+EVT+
Sbjct: 274 KCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMP-ARIEPDEVTY 332

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++VL GC   GLV++GR  FDSMR    + P ++HYG +VDL GRAGRL EA D+I  MP
Sbjct: 333 LAVLGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMP 388

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
                  W  LL A +M+ N ++ ELA+ KL +L +   G YVLLSN+YA    W  V  
Sbjct: 389 FPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGR 448

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR  M++  VKK+PG S  E+D  +H+F  GD+ H R+ EI   L EI  ++   GY   
Sbjct: 449 VRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREIYRALDEIGSKICELGYEPE 508

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           T+ V++DI EEEK+  L  HSEK+AIAFGLIS   G  IR++KNLR+C DCH V K+ISK
Sbjct: 509 TSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRICGDCHVVAKLISK 568

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            + R II+RDR RFH F++G+CSC+ YW
Sbjct: 569 AYGRVIIIRDRARFHQFEDGQCSCRDYW 596



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R  +   V L T L+D Y+KCG++  A   F  M  R+V TW +++ GLA     
Sbjct: 143 HAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQG--T 200

Query: 172 EKSLELFSLMKQAGV--------RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223
           E +L L    + AG          PNEVT V+ L  C  +G +++G    D   R  G  
Sbjct: 201 EPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHD-FARTIGAV 259

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA-GAWGALLNACRMYKNTE 275
             +     L+D+Y + G L  AL+V + + ++     ++ A + A  M+ + E
Sbjct: 260 GNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGE 312



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 38/172 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPD--VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           MY++ G L    +VF  I   D  +V   A I A +  G  + A K+FDEMP R      
Sbjct: 271 MYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMPAR------ 324

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
                                     ++ +EV+ ++VL  C H G +D GR      +  
Sbjct: 325 --------------------------IEPDEVTYLAVLGGCNHAGLVDDGRRV---FDSM 355

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           R+   +     +VD+  + G + +A D    M    ++  W +++G   M+G
Sbjct: 356 RVPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHG 407


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/442 (43%), Positives = 286/442 (64%), Gaps = 3/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EPD+V   ++ +  AK G V++AR  F+ M + + I WNAM++GYA  G   EA+ LF  
Sbjct: 235 EPDIV--ISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFRE 292

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   +++++ ++M S + A   +G+L+  RW   YI ++  +    + T L+DMY+KCG+
Sbjct: 293 MITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGS 352

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  + +++V  W+ +I G  ++G G++++ L++ MKQAGV PN+ TF+ +L  
Sbjct: 353 IYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTA 412

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG E F  M  ++GIEP  +HY C+VDL GRAG L++A D I  MP+KP   
Sbjct: 413 CKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVS 471

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL+AC++++   +GE+A+ +L  L+  N G YV LSN+YA +  W RV NVR +M 
Sbjct: 472 VWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMT 531

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            KG+ K  G S IE++  +  F  GD +HP+  EI   L  + +RLK AGYV +   V++
Sbjct: 532 QKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLH 591

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+  EE E+TLC HSE++A+A+G+IS   G  +RI KNLR C +CH   K+ISK+ +REI
Sbjct: 592 DLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREI 651

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD  RFHHFK+G CSC  +W
Sbjct: 652 IIRDAKRFHHFKDGVCSCGDFW 673



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 137/285 (48%), Gaps = 12/285 (4%)

Query: 10  YCQKVFDGIHEPDVVCQTAMI---SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ 66
           Y Q +  G+H+    C+  MI   +AC   GDV+ A K F E+ E D + WNA++ GY Q
Sbjct: 22  YVQLIVSGLHK----CRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQ 77

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
                  + ++  MQI  V  N  + + VL AC        G+  H    +      V +
Sbjct: 78  KNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFV 137

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
             +LV MY+K G ++ A   F  + +R V +WTS+I G   NG   ++L +F  M+Q  V
Sbjct: 138 QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 197

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           +P+ +  VSV+     V  + +G+     +  + G+E   +    L  +Y + G ++ A 
Sbjct: 198 KPDWIALVSVMTAYTNVEDLGQGKS-IHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVAR 256

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
              N+M  KP+   W A+++    Y N   GE A +   E+ TKN
Sbjct: 257 FFFNRME-KPNLILWNAMISG---YANNGYGEEAIKLFREMITKN 297



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 133/236 (56%), Gaps = 5/236 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V  Q +++S  AK G +  AR +FD++ +R  ++W ++++GY Q G   EAL++F  M+
Sbjct: 134 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 193

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +VK + +++VSV++A T++  L QG+  H  + +  L+    +  +L  MY+K G + 
Sbjct: 194 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 253

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A  FF  M++ N+  W ++I G A NG GE++++LF  M    +R + +T  S +    
Sbjct: 254 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 313

Query: 202 VVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            VG +E  R  + + S + EY  + ++     L+D+Y + G +  A  V +++  K
Sbjct: 314 QVGSLELARWLDGYIS-KSEYRDDTFVN--TGLIDMYAKCGSIYLARCVFDRVADK 366



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +  D    T +I   AKCG + LAR +FD + ++D + W+ M+ GY   G  +EA+ L++
Sbjct: 333 YRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 392

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V  N+ + + +L+AC + G + +G      +  + ++      + +VD+  + G
Sbjct: 393 EMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAG 452

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            +N+A DF   M  +  V  W +++  
Sbjct: 453 YLNQAYDFIMSMPIKPGVSVWGALLSA 479


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/453 (40%), Positives = 287/453 (63%), Gaps = 3/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  + +G+   D++ +  +I    +CG+ D +  +F  + ++D ++W +M+      G+
Sbjct: 491 HCYAIRNGL--LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGR 548

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
              A+ LF  MQ  +++ + V++VS+L A   L +L +G+  H ++ R    +   + ++
Sbjct: 549 LNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSS 608

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LVDMYS CG+MN A+  F   K ++V  WT++I    M+G G+++++LF  M Q G+ P+
Sbjct: 609 LVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPD 668

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            V+F+++L  C    LVEEG+ + D M  +Y ++PW EHY C+VD+ GR+G+ +EA + I
Sbjct: 669 HVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFI 728

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
             MPM P +  W ALL ACR+++N  +  +A+ KL+ELE  N G Y+L+SN++AE   W+
Sbjct: 729 KTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWN 788

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL-A 368
                R  M  +G++K P CS IE+   +H F +GD  H     I + L EI+  L+   
Sbjct: 789 NAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREG 848

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GYV +T  V++D  EEEK D L KHSE++AIAFGLIS + G+PIRI KNLRVC DCH+ T
Sbjct: 849 GYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFT 908

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K++SK+F R+I+VRD NRFHHF  G CSC+ +W
Sbjct: 909 KLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 140/270 (51%), Gaps = 8/270 (2%)

Query: 3   AELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           AELG L   +++   +     E ++ C  A++   AK G VD A ++F ++ E+D I+WN
Sbjct: 278 AELGLLSLGRELHAALLKCGSELNIQCN-ALLVMYAKYGRVDSALRVFGQIAEKDYISWN 336

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           +ML+ Y Q     EA+  F  M  H  + +   +VS+ SA  HL  L+ GR  H Y  + 
Sbjct: 337 SMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQ 396

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
           RL   + +G  L+DMY KCG++  +   F  M  R+  +WT+++   A +    ++LE+ 
Sbjct: 397 RLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMI 456

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             +++ G+  + +   S+L  CC +  +   ++      R   ++  LE+   L+D+YG 
Sbjct: 457 LELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENR--LIDIYGE 514

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            G  D +L++  ++  K    +W +++N C
Sbjct: 515 CGEFDHSLNLFQRVEKKDIV-SWTSMINCC 543



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D    T ++    +CG VD AR++F+ MP R   +WNA++  Y   G + EA+ ++  
Sbjct: 92  DDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGA 151

Query: 80  MQIHDVK---LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           M+         +  ++ SVL AC   G    G   H    +  L  +  +  AL+ MY+K
Sbjct: 152 MRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAK 211

Query: 137 CGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           CG ++ A+  F  +++  R+V +W SV+ G   NG   ++L LF  M+ AG   N  T V
Sbjct: 212 CGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSV 271

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +VL+ C  +GL+  GRE   ++ +  G E  ++    LV +Y + GR+D AL V  ++  
Sbjct: 272 AVLQVCAELGLLSLGRELHAALLK-CGSELNIQCNALLV-MYAKYGRVDSALRVFGQIAE 329

Query: 255 KPHAGAWGALLN 266
           K +  +W ++L+
Sbjct: 330 KDYI-SWNSMLS 340



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 6/251 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLF 77
           +   +   A+I   AKCG +D A ++F+ + +  RD  +WN++++G  Q G++ EAL LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             MQ     +N  + V+VL  C  LG L  GR  H  + +   ++ +    AL+ MY+K 
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAKY 314

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G ++ A+  F  + E++  +W S++     N    ++++ F  M Q G +P+    VS+ 
Sbjct: 315 GRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLS 374

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
                +  +  GRE F +   +  +   L+    L+D+Y + G ++ +  V   M ++ H
Sbjct: 375 SALGHLSRLNNGRE-FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDH 433

Query: 258 AGAWGALLNAC 268
             +W  +L AC
Sbjct: 434 I-SWTTIL-AC 442


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/464 (42%), Positives = 288/464 (62%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   + VFD I   + +  TAM+S  AK G  + A ++F  +P ++  +W A+
Sbjct: 149 MYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTAL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G+ Q GK  EA  +F  M+   V  L+ + + S++ AC +L A   GR  H  +    
Sbjct: 209 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALG 268

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               V +  AL+DMY+KC ++  A D F  M+ R+V +WTS+I G+A +G  EK+L L+ 
Sbjct: 269 FDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 328

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   GV+PNEVTFV ++  C  VG VE+GRE F SM ++YGI P L+HY CL+DL GR+
Sbjct: 329 DMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 388

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
           G LDEA ++I+ MP  P    W ALL+AC+     +MG  +A   +   + K+   Y+LL
Sbjct: 389 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILL 448

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA +  W +V   R+ +    V+K PG S +EV +E   F+AG+ +HP   +I  +L
Sbjct: 449 SNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 508

Query: 359 GEISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            ++   +++  GYV +T+ +++D++E+EKE  L  HSE+ A+A+GL+    G PIRIVKN
Sbjct: 509 KKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKN 568

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH V K IS++  REIIVRD  R+HHFK GKCSC  +W
Sbjct: 569 LRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 5/193 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VK 86
            +++   KCG    A ++FDEMP RD IAW ++L    Q   S + L +F  +     ++
Sbjct: 43  TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 102

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            ++    +++ AC +LG++D GR  H +   +       + ++LVDMY+KCG +N A   
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++ +N  +WT+++ G A +G  E++LELF ++       N  ++ +++ G    G  
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPV----KNLYSWTALISGFVQSGKG 218

Query: 207 EEGREHFDSMRRE 219
            E    F  MRRE
Sbjct: 219 LEAFSVFTEMRRE 231



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 8/212 (3%)

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           L  C     L   +  H +I +  +     L   LV++Y KCG  + A+  F  M  R+ 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 156 YTWTSVIGGL-AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HF 213
             W SV+  L   N +G+      S+   +G+RP++  F ++++ C  +G ++ GR+ H 
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
             +  EY  +  ++    LVD+Y + G L+ A  V + + +K +  +W A+++    Y  
Sbjct: 130 HFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSG---YAK 183

Query: 274 TEMGELASRKLVELETKNHGAYVLLSNIYAES 305
           +   E A      L  KN  ++  L + + +S
Sbjct: 184 SGRKEEALELFRILPVKNLYSWTALISGFVQS 215


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/450 (44%), Positives = 286/450 (63%), Gaps = 8/450 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV    ++I   A CG ++ A+ +FD+MP+R  ++WNAM+  +   G+   AL LF  
Sbjct: 158 QSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQ 217

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN----RLKMTVTLGTALVDMYS 135
            Q    + +  ++ SV++AC  L AL  G WAH ++ RN      +  V +  +L+DMY 
Sbjct: 218 FQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYC 277

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFV 194
           KCG+++ A   F GM++ +V +W S+I G AM+G GE +LE F  +++ +   PN +TFV
Sbjct: 278 KCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFV 337

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            VL  C    +V EGR++FD M  EY IEP LEHYGCLVD+  RAG +DEAL+++  MPM
Sbjct: 338 GVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPM 397

Query: 255 KPHAGAWGALLNAC-RMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKNWDRVI 312
           KP    W +LL++C +   + E+ E  +R+++E E   + G YVLLS +YA +  W+ V 
Sbjct: 398 KPDVVIWRSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVG 457

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR++M   G+ K PGCS+IEVD   HEFFAGD +HP+  EI  +L  +  R+   GY  
Sbjct: 458 LVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKP 517

Query: 373 N-TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
           + +   M D     K D+L  HSE++AIA GL++LK G+PIRI KNLRVC DCH VT +I
Sbjct: 518 DYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLI 577

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           S++FN EIIVRDR RFHHFK+G CSC  YW
Sbjct: 578 SEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 8/247 (3%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGK---SREALHLFHLM-QIHDVKLNEVSMV 93
           D++ A ++FD++   +   WN ++   AQ       REA+ L++ M Q      +  +  
Sbjct: 71  DLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFP 130

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            VL AC +L AL +G+ AH ++ +   +  V +  +L+  Y+ CG++  A + F  M +R
Sbjct: 131 FVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQR 190

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           ++ +W ++I    + G  E +L+LF   +Q    P+  T  SV+  C  +  +  G    
Sbjct: 191 SLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAH 250

Query: 214 DSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
             + R  G+    +H      L+D+Y + G LD A  +   M  K    +W +++    M
Sbjct: 251 AFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGM-QKHDVTSWNSMILGFAM 309

Query: 271 YKNTEMG 277
           +   E+ 
Sbjct: 310 HGKGELA 316


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/464 (40%), Positives = 288/464 (62%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           MYA+ G +    ++ +    P  +V+  T+++    K GD+D AR +FD +  RD +AW 
Sbjct: 322 MYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWT 381

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GYAQ G   +AL LF LM     K N  ++ +VLS  + L +LD G+  H    R 
Sbjct: 382 AMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRL 441

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLEL 177
               +V++G AL+ MYS+ G++  A   F  +   R+  TWTS+I  LA +G G +++EL
Sbjct: 442 EEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIEL 501

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M +  ++P+ +T+V VL  C  VGLVE+G+ +F+ M+  + IEP   HY C++DL G
Sbjct: 502 FEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLG 561

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG L+EA + I  MP++P   AWG+LL++CR++K  ++ ++A+ KL+ ++  N GAY+ 
Sbjct: 562 RAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLA 621

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+N  +    W+    VR+ MK K VKK  G S +++  +VH F   D  HP+ + I  M
Sbjct: 622 LANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCM 681

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + +I + +K  G++ +TN V++D+E+E KE  L  HSEK+AIAF LI+  +   +RI+KN
Sbjct: 682 ISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKN 741

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   + IS +  REIIVRD  RFHHFK+G CSC+ YW
Sbjct: 742 LRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 136/300 (45%), Gaps = 37/300 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G     + VFD +   D      MIS   +    DLA  +FD+M + D ++WN++
Sbjct: 189 MYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSI 248

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           + GY   G    AL  F  M +   +K ++ ++ SVLSAC +  +L  G+  H +I R  
Sbjct: 249 ITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRAD 308

Query: 120 LKMTVTLGTALVDMYSKC---------------------------------GNMNKAMDF 146
           + +   +G AL+ MY+K                                  G+++ A   
Sbjct: 309 VDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAI 368

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +K R+V  WT++I G A NG    +L LF LM + G +PN  T  +VL     +  +
Sbjct: 369 FDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASL 428

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           + G++ H  ++R E      +     L+ +Y R+G + +A  + N +        W +++
Sbjct: 429 DHGKQLHAVAIRLEEVSS--VSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 133/282 (47%), Gaps = 35/282 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G      ++FD +          ++SA AK G++D AR++FDE+P+ D ++W  M
Sbjct: 57  LYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTM 116

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY   G  + A+H F  M    +   + +  +VL++C    ALD G+  H ++ +   
Sbjct: 117 IVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQ 176

Query: 121 KMTVTLGTALVDMYSKCGN-------------------------------MNKAMDFFWG 149
              V +  +L++MY+KCG+                                + A+  F  
Sbjct: 177 SGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQ 236

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M + ++ +W S+I G    G   ++LE FS M K + ++P++ T  SVL  C     ++ 
Sbjct: 237 MTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKL 296

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           G++ H   +R +  I   + +   L+ +Y ++G ++ A  ++
Sbjct: 297 GKQIHAHIVRADVDIAGAVGN--ALISMYAKSGAVEVAHRIV 336


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/461 (39%), Positives = 289/461 (62%), Gaps = 18/461 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G L    + F+ +         +M+    + G VD AR  F+++PE+D ++WN M
Sbjct: 412 LYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTM 471

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +  Y +     E+  +F  MQ  +VK ++ +++S+LS+C  +GAL+ G W +VYIE+N +
Sbjct: 472 VNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEI 531

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            +   LGTAL+DMY KCG +  A + F  + E+NV+ WT+++   AM G   ++++L+  
Sbjct: 532 GIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLE 591

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ GV+P+ VTF+++L  C   GLV+EG ++F+ +R  Y I P + HYGC+VDL GR G
Sbjct: 592 MEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVG 651

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L+E +  I +MP++P    W +L+ ACR + N E+ E A ++L+E++  N+GA+VLLSN
Sbjct: 652 HLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSN 711

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA++  WD V  VR  +   GV K PG ++IE +  VHEF A +       +I  ML +
Sbjct: 712 IYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSA---DILCMLQD 768

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I RRL               + ++E  DT  +HSE++A+AFGLI+ +E  PIR+V ++R+
Sbjct: 769 IERRL---------------LVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRM 813

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V K+IS+ ++REI++RD  RFH F +G CSCK YW
Sbjct: 814 CRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 146/283 (51%), Gaps = 35/283 (12%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DVV  T ++S   K   +D AR++FD+M ER  ++W  M++GY Q G   E+L LF  
Sbjct: 299 EVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQ 358

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+  +V  +EV++V+VLSAC HL   D GR  H +I    + +   LG AL+D+Y+KCG 
Sbjct: 359 MRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGK 418

Query: 140 M-------------------------------NKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           +                               +KA DFF  + E+++ +W +++     +
Sbjct: 419 LDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKH 478

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLE 227
               +S E+F  M+ + V+P++ T +S+L  C  VG +  G   +    + E GI+  L 
Sbjct: 479 DLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG 538

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
               L+D+YG+ G ++ A ++  ++ ++ +   W A++ A  M
Sbjct: 539 --TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAM 578



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 54/279 (19%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           +KCG +    ++F++M  RD I+WN M++ Y   G  REAL LF  M +  V  +E++MV
Sbjct: 179 SKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMV 238

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM------------- 140
           S++S C  L  L+ G+  H+YI  N+L +  +L   LVDMYSKCG M             
Sbjct: 239 SLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDES 298

Query: 141 --------------------NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                               +KA   F  M ER++ +WT+++ G    G   +SLELF  
Sbjct: 299 EVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQ 358

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV------- 233
           M+   V P+EV  V+VL  C  +       E FD  R    +  ++  YG LV       
Sbjct: 359 MRFENVIPDEVALVTVLSACVHL-------EDFDLGR---SVHAFIVTYGMLVDGFLGNA 408

Query: 234 --DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA-CR 269
             DLY + G+LDEAL    ++P K  A +W ++L+  CR
Sbjct: 409 LLDLYAKCGKLDEALRTFEQLPCKS-AASWNSMLDGFCR 446



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 15/240 (6%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           IH+P++  Q  +++      ++D A ++     E + I WN +L    + G  +E L  +
Sbjct: 64  IHDPEITSQ--VLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECY 121

Query: 78  HLMQIHDVKLNEVSMVSVLSAC-----THLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           + M    V L+  +   ++ AC       LG+   GR       RN+     +L   L+ 
Sbjct: 122 YHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNK-----SLNNNLMG 176

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           +YSKCG + +    F  M  R+V +W ++I    + G   ++L+LF  M  +GV P+E+T
Sbjct: 177 LYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEIT 236

Query: 193 FVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            VS++  C  +  +E G R H   +  +  I   L    CLVD+Y + G++DEA  ++++
Sbjct: 237 MVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL--LNCLVDMYSKCGKMDEAHGLLSR 294


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/449 (42%), Positives = 287/449 (63%), Gaps = 1/449 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF+   E DV  Q  +IS   KCG ++ A  +F++M E+   +W++++  +A      E 
Sbjct: 157 VFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 74  LHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           L L   M        E S +VS LSACTHLG+ + GR  H  + RN  ++ V + T+L+D
Sbjct: 217 LMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLID 276

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG++ K +  F  M  +N Y++T +I GLA++G G ++L +FS M + G+ P++V 
Sbjct: 277 MYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVV 336

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +V VL  C   GLV+EG + F+ M+ E+ I+P ++HYGC+VDL GRAG L EA D+I  M
Sbjct: 337 YVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSM 396

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P+KP+   W +LL+AC+++ N E+GE+A+  + +L   N G Y++L+N+YA ++ W  V 
Sbjct: 397 PIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVA 456

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            +R  M  K + + PG S++E +R V++F + D++ P+   I  M+ ++  +LK  GY  
Sbjct: 457 RIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTP 516

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           + + V+ D++E+EK   L  HS+K+AIAF LI   EG P+RI +NLR+C DCH  TK IS
Sbjct: 517 DMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFIS 576

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ++ REI VRD NRFHHFK+G CSCK YW
Sbjct: 577 VIYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 4/237 (1%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D  C + ++++CA  + G ++ A  +F ++ E     +N M+ G        EAL L+  
Sbjct: 62  DSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVE 121

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    ++ +  +   VL AC+ L AL +G   H ++    L++ V +   L+ MY KCG 
Sbjct: 122 MLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGA 181

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLR 198
           +  A   F  M E++V +W+S+IG  A      + L L   M + G  R  E   VS L 
Sbjct: 182 IEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALS 241

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +G    GR     + R    E  +     L+D+Y + G L++ L V   M  K
Sbjct: 242 ACTHLGSPNLGRCIHGILLRNIS-ELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHK 297


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/458 (41%), Positives = 294/458 (64%), Gaps = 1/458 (0%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG   +C  +  G+ + +V    A++   AKCG +D + K+F E+P R+ + WN M+ G
Sbjct: 260 QLGKQVHCHVLKVGL-DGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVG 318

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y Q G   +AL L+  M    V+ +EV+  SVL AC  L A++ G   H    +      
Sbjct: 319 YVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKD 378

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V +G AL+DMY+KCG++  A   F  + ER+  +W ++I G +M+G   ++L+ F +M++
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQE 438

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
               PN++TFVS+L  C   GL++ G+ +F SM ++YGIEP +EHY C+V L GR+G LD
Sbjct: 439 TECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLD 498

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           +A+ +I ++P++P+   W ALL AC ++ + ++G ++++++++++ ++   +VLLSNIYA
Sbjct: 499 KAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            ++ W+ V +VR+ MK KGVKK PG S IE    VH F  GD +HP    I  ML  ++ 
Sbjct: 559 RTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNM 618

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           + + AGYV + N V+ D+E++EK+  L  HSE++A+AFGLI       IRI+KNLR+C D
Sbjct: 619 KTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTD 678

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH   K+ISK+  R+II+RD NRFHHF++G CSC  YW
Sbjct: 679 CHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 140/259 (54%), Gaps = 4/259 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V    +E D+     ++    K GD +   ++F+EMP+ D I W+ M++ YAQ  +SREA
Sbjct: 168 VLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREA 227

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  M+   V  N+ +  SVL +C  +  L  G+  H ++ +  L   V +  AL+D+
Sbjct: 228 VELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDV 287

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y+KCG ++ +M  F  +  RN  TW ++I G   +G G+K+L L+  M +  V+ +EVT+
Sbjct: 288 YAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTY 347

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            SVLR C  +  +E G + H  S++  Y  +  + +   L+D+Y + G +  A  V + +
Sbjct: 348 SSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGN--ALIDMYAKCGSIKNARLVFDML 405

Query: 253 PMKPHAGAWGALLNACRMY 271
             +    +W A+++   M+
Sbjct: 406 SERDEI-SWNAMISGYSMH 423



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 139/266 (52%), Gaps = 14/266 (5%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           HE +    TA+I A A CG V+ AR+ FD +  +D ++W  M+A YA+  + +++L LF 
Sbjct: 72  HESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFA 131

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M++     N  +   VL AC  L A   G+  H  + +   +M + +G  L+D+Y+K G
Sbjct: 132 EMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFG 191

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           + N  +  F  M + +V  W+ +I   A +    +++ELF  M++A V PN+ TF SVL+
Sbjct: 192 DANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQ 251

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +  ++ G++ H   ++   G++  +     L+D+Y + GRLD ++ +  ++P +  
Sbjct: 252 SCASIENLQLGKQVHCHVLK--VGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNE 309

Query: 258 AGAWGALL----------NACRMYKN 273
              W  ++           A  +YKN
Sbjct: 310 V-TWNTMIVGYVQSGDGDKALSLYKN 334



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 152/334 (45%), Gaps = 23/334 (6%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           MP+R+ +++  ++ GY Q  +  E + LF  +     +LN     ++L     +   +  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
              H  I +   +    +GTAL+D Y+ CG++N A   F  +  +++ +WT ++   A N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLE 227
              + SL+LF+ M+  G  PN  TF  VL+ C  +     G+  H   ++  Y ++ ++ 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV- 179

Query: 228 HYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
             G  L+DLY + G  ++ L V  +MP K     W  +++  R  ++ +     SR+ VE
Sbjct: 180 --GVGLLDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMIS--RYAQSNQ-----SREAVE 229

Query: 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE 346
           L  +   A+V L N +  +       ++  +   K V     C V++V  + + F +   
Sbjct: 230 LFGQMRRAFV-LPNQFTFASVLQSCASIENLQLGKQVH----CHVLKVGLDGNVFVSN-- 282

Query: 347 THPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
                 ++    G +   +KL   + N N V ++
Sbjct: 283 ---ALMDVYAKCGRLDNSMKLFMELPNRNEVTWN 313


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/449 (42%), Positives = 284/449 (63%), Gaps = 1/449 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    E DV  Q  +IS   KCG ++ A  +F++M E+   +W++++  +A      E 
Sbjct: 157 VFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 74  LHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           L L   M        E S +VS LSACTHLG+ + GR  H  + RN  ++ V + T+L+D
Sbjct: 217 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLID 276

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG++ K +  F  M  +N Y++T +I GLA++G G +++ +FS M + G+ P++V 
Sbjct: 277 MYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVV 336

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +V VL  C   GLV EG + F+ M+ E+ I+P ++HYGC+VDL GRAG L EA D+I  M
Sbjct: 337 YVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSM 396

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P+KP+   W +LL+AC+++ N E+GE+A+  +  L   N G Y++L+N+YA +K W  V 
Sbjct: 397 PIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVA 456

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            +R  M  K + + PG S++E +R V++F + D++ P    I  M+ ++  +LK  GY  
Sbjct: 457 RIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTP 516

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           + + V+ D++E+EK   L  HS+K+AIAF LI   EG PIRI +NLR+C DCH  TK IS
Sbjct: 517 DMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFIS 576

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ++ REI VRDRNRFHHFK+G CSCK YW
Sbjct: 577 VIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 4/237 (1%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D  C + ++++CA  + G ++ A  +F ++ E     +N M+ G        EAL L+  
Sbjct: 62  DSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVE 121

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    ++ +  +   VL AC+ L AL +G   H ++ +  L++ V +   L+ MY KCG 
Sbjct: 122 MLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGA 181

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLR 198
           +  A   F  M E++V +W+S+IG  A      + L L   M   G  R  E   VS L 
Sbjct: 182 IEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALS 241

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +G    GR     + R    E  +     L+D+Y + G L++ L V   M  K
Sbjct: 242 ACTHLGSPNLGRCIHGILLRNIS-ELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHK 297


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 287/442 (64%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D     +++S    CG+   AR +FD M E+  ++WNAM++GY+Q G   +AL LF  
Sbjct: 369 EIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRK 428

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +     + +++++VSVL AC+   AL  G+  H Y  +  L   V +  + +DMY+K G 
Sbjct: 429 LVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGC 488

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + ++   F G+K +++ +W ++I    ++G GE+S+ELF  M++ G  P+  TF+ +L  
Sbjct: 489 IKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTV 548

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVEEG ++F+ M+  +GIEP LEHY C++D+ GRAGRLD+AL ++++MP +P + 
Sbjct: 549 CSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSR 608

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +LL+ CR +   E+G++ + KL+ELE KN   YV LSN+YA S  WD V  VRQ++K
Sbjct: 609 VWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIK 668

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G++K  GCS IE+  +VH F AGD   P+  E+ +   ++ +++   GY  NT+ V++
Sbjct: 669 DIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLH 728

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D++EE+K + L  HSEK+AI FGL++  +G  +RI KNLR+C DCH+ +K +S+V  REI
Sbjct: 729 DVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREI 788

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD  RFHHFK+G CSC  YW
Sbjct: 789 IIRDNKRFHHFKDGLCSCGDYW 810



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 133/255 (52%), Gaps = 4/255 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D +     ++A AKCG +  A ++F  M  +   +WNA++ G AQ G  R+AL+L+  M 
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMT 329

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  +  ++ S+L A  HL +L  G+  H ++ R+ L++   +G +L+ +Y  CG  +
Sbjct: 330 YSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESS 389

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F GM+E++  +W ++I G + NG  E +L LF  +   G +P+++  VSVL  C 
Sbjct: 390 SARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACS 449

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGA 260
               +  G+E      +   +E       C  +D+Y ++G + E+  V + +  K  A +
Sbjct: 450 QQSALRLGKETHCYALKALLMEDVF--VACSTIDMYAKSGCIKESRSVFDGLKNKDLA-S 506

Query: 261 WGALLNACRMYKNTE 275
           W A++ A  ++ + E
Sbjct: 507 WNAIIAAYGVHGDGE 521



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 5/266 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    +++   +KCG +  A+ +FD+   ++ ++WN M+ G    G   EA +LF  MQ
Sbjct: 168 DVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQ 227

Query: 82  IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +  D+++NEV+++++L AC  +  L   +  H Y  R+  +    +    V  Y+KCG +
Sbjct: 228 MQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGML 287

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F+ M+ + V +W ++IGG A NG   K+L L+  M  +G+ P+  T  S+L   
Sbjct: 288 ICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLAS 347

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             +  +  G+E H   +R    I+ ++     L+ LY   G    A  + + M  K    
Sbjct: 348 AHLKSLRYGKEVHGFVLRHGLEIDSFIGI--SLLSLYIHCGESSSARLLFDGMEEKSSV- 404

Query: 260 AWGALLNACRMYKNTEMGELASRKLV 285
           +W A+++        E   +  RKLV
Sbjct: 405 SWNAMISGYSQNGLPEDALILFRKLV 430



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 7/251 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH-LFHLM 80
           DV    A+I+   K G VD A K+F  MP R+ ++WN++++G+++ G S++    L  +M
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMM 124

Query: 81  QIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
              +  L ++ ++V+VL  C     +  G   H    +  L   V +  +LVDMYSKCG 
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY 184

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLR 198
           + +A   F     +N  +W ++IGGL   G   ++  LF  M+ Q  +  NEVT +++L 
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +  +   +E H  S+R  +  +  + +    V  Y + G L  A  V   M  K  
Sbjct: 245 ACLEISQLRSLKELHGYSIRHGFQYDELVAN--GFVAAYAKCGMLICAERVFYSMETKT- 301

Query: 258 AGAWGALLNAC 268
             +W AL+  C
Sbjct: 302 VNSWNALIGGC 312



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 22/214 (10%)

Query: 82  IHDVKLN--EVSMVSVLSACTHLGALDQG--RWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           I D + N    +   V+ ACT  G+LD+G     H  + +  L + V +G AL+ MY K 
Sbjct: 22  ITDTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKF 79

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVRPNEVTFVS 195
           G ++ A+  F  M  RN+ +W S+I G + NG  +   ++   M   + G+ P+  T V+
Sbjct: 80  GFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVT 139

Query: 196 VLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           VL  C     V+ G R H   +  + G+   +     LVD+Y + G L EA  + +K   
Sbjct: 140 VLPVCAREVDVQMGIRIH--GLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNR 197

Query: 255 KPHAGAW----------GALLNACRMYKNTEMGE 278
           K +A +W          G +  A  +++  +M E
Sbjct: 198 K-NAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE 230



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE----RDPIA 56
           MYA+ GC+   + VFDG+   D+    A+I+A    GD + + ++F+ M +     D   
Sbjct: 482 MYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFT 541

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQ 81
           +  +L   +  G   E L  F+ MQ
Sbjct: 542 FIGILTVCSHAGLVEEGLKYFNEMQ 566


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/442 (44%), Positives = 283/442 (64%), Gaps = 8/442 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  V  Q +++   A CGD + A  +F+ M +RD +A  +++ G+A  G+  EAL LF  
Sbjct: 162 ESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFRE 221

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+ +  ++VS+LSA   LGAL+ GR  HVY+ +  L+    +  +L+D+Y+KC  
Sbjct: 222 MSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKC-- 279

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
                D  W   ERN  +WTS+I GLA+NG GE++LELF  M+  G+ P+E+TFV VL  
Sbjct: 280 -----DAIWE-XERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYA 333

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G+++EG ++F  M+ E+GI P +EHYGC+VDL  RAG + +A + I  MP++P+A 
Sbjct: 334 CSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAV 393

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL AC ++ +  +GE A   L++LE K+ G YVLLSN+Y     W  V  +R+ M 
Sbjct: 394 TWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSML 453

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             GVKK  G S++E+   V+EF  G+ +HP+  ++  +L +I+  LKL GYV +T  V+ 
Sbjct: 454 KDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLA 513

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           DIEEEEKE  L  HSEK AIAF  ++   G  IR++KNLRVC DCH   K+++KV++REI
Sbjct: 514 DIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREI 573

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RDR RFHHF+ G CSCK YW
Sbjct: 574 VIRDRGRFHHFRGGSCSCKDYW 595



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           +  A  +F  +   +   WN M  GYA+      AL  +  M +  ++ +  +   +L A
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
            +    + +G   H    RN  +  V +  +L+ +Y+ CG+   A + F  M++R++   
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAX 199

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            SVI G A+NG   ++L LF  M   GV P+  T VS+L     +G +E GR
Sbjct: 200 ISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGR 251


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/442 (43%), Positives = 284/442 (64%), Gaps = 18/442 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G L   Q+VFD     D+    ++++A AK G +D ARK+FDEMPER+ I+W+ +
Sbjct: 106 MYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-----VKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           + GY  CGK +EAL LF  MQ+       V+ NE +M +VLSAC  LGAL+QG+W H YI
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKS 174
           ++  +++ + LGTAL+DMY+KCG++ +A   F  +  +++V  ++++I  LAM G  ++ 
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285

Query: 175 LELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
            +LFS M  +  + PN VTFV +L  C   GL+ EG+ +F  M  E+GI P ++HYGC+V
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           DLYGR+G + EA   I  MPM+P    WG+LL+  RM  + +  E A ++L+EL+  N G
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 405

Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
           AYVLLSN+YA++  W            +G+ K+PGCS +EV+  VHEF  GDE+      
Sbjct: 406 AYVLLSNVYAKTGRW-----------MEGINKVPGCSYVEVEGVVHEFVVGDESQQESER 454

Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
           I  ML EI +RL+ AGYV +T  V+ D+ E++KE  L  HSEK+AIAF L+  + G P+R
Sbjct: 455 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 514

Query: 414 IVKNLRVCWDCHDVTKMISKVF 435
           I+KNLR+C DCH     ++++F
Sbjct: 515 IIKNLRICGDCHLTGLALAEIF 536


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/433 (42%), Positives = 273/433 (63%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I +  KCG +D A K+F E    D I+   M+   +QC    +A+ LF  M    ++ +
Sbjct: 450 LIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPD 509

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
              + S+L+ACT L A +QG+  H ++ + +    V  G ALV  Y+KCG++  A   F 
Sbjct: 510 SFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFS 569

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           G+ ER + +W+++IGGLA +G G+++L+LF  M   GV PN +T  SVL  C   GLV++
Sbjct: 570 GLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDD 629

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            +++F+SM+  +GI+   EHY C++D+ GRAG+L++A++++N MP + +A  WGALL A 
Sbjct: 630 AKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGAS 689

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R++++ E+G +A+ KL  LE +  G +VLL+N YA +  WD +  VR++MK   VKK P 
Sbjct: 690 RVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPA 749

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKED 388
            S +E+  +VH F  GD++HP   +I   L E+   +  AGYV N    ++D++  EKE 
Sbjct: 750 MSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKEL 809

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
            L  HSE++A+AF LIS   G PIR+ KNLR+C DCH   K ISK+ +REII+RD NRFH
Sbjct: 810 LLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFH 869

Query: 449 HFKEGKCSCKGYW 461
           HF  G CSC  YW
Sbjct: 870 HFTNGTCSCGDYW 882



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 6/251 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM----PERDPIAWNAMLAGYAQCGKSREALHLF 77
           DV    A+++     G VD AR+MFDE      ER+ ++WN M++ Y +  +S +A+ +F
Sbjct: 134 DVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVF 193

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M     + NE     V++ACT    L+ GR  H  + R   +  V    ALVDMYSK 
Sbjct: 194 REMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKL 253

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A   F  M   +V +W + I G   +G   ++LEL   MK +G+ PN  T  SVL
Sbjct: 254 GDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVL 313

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           + C   G    GR+    M +           G LVD+Y + G LD+A  V + MP +  
Sbjct: 314 KACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFMPRRDL 372

Query: 258 AGAWGALLNAC 268
              W AL++ C
Sbjct: 373 I-LWNALISGC 382



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 136/275 (49%), Gaps = 7/275 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D      ++   AK G +D ARK+FD MP RD I WNA+++G +  G+  E L LFH M+
Sbjct: 340 DEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMR 399

Query: 82  IH--DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
               D+ +N  ++ SVL +     A+   R  H   E+  L     +   L+D Y KCG 
Sbjct: 400 KEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQ 459

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F   +  ++ + T+++  L+    GE +++LF  M + G+ P+     S+L  
Sbjct: 460 LDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNA 519

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++R++  + +  +   LV  Y + G +++A    + +P +   
Sbjct: 520 CTSLSAYEQGKQVHAHLIKRQFTSDVFAGN--ALVYAYAKCGSIEDADMAFSGLPERGIV 577

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNH 292
            +W A++     + + +   +L  R L E    NH
Sbjct: 578 -SWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNH 611



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 3/235 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E DV    A++   +K GD+++A  +F++MP  D ++WNA ++G    G    AL L  
Sbjct: 236 YEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLL 295

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   +  N  ++ SVL AC   GA + GR  H ++ +        +   LVDMY+K G
Sbjct: 296 QMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHG 355

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPNEVTFVSV 196
            ++ A   F  M  R++  W ++I G + +G   + L LF  M++ G  +  N  T  SV
Sbjct: 356 FLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASV 415

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           L+       +   R+   ++  + G+         L+D Y + G+LD A+ V  +
Sbjct: 416 LKSTASSEAICHTRQ-VHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE 469



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 126/278 (45%), Gaps = 17/278 (6%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACA--------KCGDVDLARKMFDEMPERDP 54
           + L   G  + +F G H    + ++ +++  +        +C     AR +FDE+P+   
Sbjct: 9   SALARFGTSRSLFAGAHLHSHLLKSGLLAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCH 68

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           ++W++++  Y+  G  R+AL  F  M+   V  NE ++  VL        +  G   H  
Sbjct: 69  VSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---VRFGAQVHAL 125

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKA---MDFFWGM-KERNVYTWTSVIGGLAMNGA 170
               RL   V +  ALV +Y   G +++A    D + G+  ERN  +W ++I     N  
Sbjct: 126 AVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQ 185

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
              ++ +F  M  +G RPNE  F  V+  C     +E GR+   ++ R  G E  +    
Sbjct: 186 SGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRT-GYEKDVFTAN 244

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            LVD+Y + G ++ A  V  KMP      +W A ++ C
Sbjct: 245 ALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGC 281



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 16/152 (10%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A++ A AKCG ++ A   F  +PER  ++W+AM+ G AQ G  + AL LFH M 
Sbjct: 544 DVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRML 603

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--------TALVDM 133
              V  N +++ SVLSAC H G +D    A  Y E     M  T G          ++D+
Sbjct: 604 DEGVAPNHITLTSVLSACNHAGLVDD---AKKYFE----SMKETFGIDRTEEHYACMIDI 656

Query: 134 YSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
             + G +  AM+    M  + N   W +++G 
Sbjct: 657 LGRAGKLEDAMELVNNMPFQANAAVWGALLGA 688


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/440 (42%), Positives = 278/440 (63%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++    ++S  AKCG +D A + FDEM  +D ++++A+++G  Q G +  AL +F +MQ
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ 405

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +  +  +M+ VL AC+HL AL  G  +H Y+          +  AL+DMYSKCG ++
Sbjct: 406 LSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKIS 465

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  M   ++ +W ++I G  ++G G ++L LF  +   G++P+++TF+ +L  C 
Sbjct: 466 FAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EGR  FD+M R++ I P +EH  C+VD+ GRAG +DEA   I  MP +P    W
Sbjct: 526 HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 585

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ACR++KN E+GE  S+K+  L  ++ G +VLLSNIY+ +  WD   ++R   K  
Sbjct: 586 SALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDW 645

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK+PGCS IE++  VH F  GD++H + ++I   L E+   +K  GY A  + V  D+
Sbjct: 646 GLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDV 705

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  L  HSEK+AIAFG+++LK G PI + KNLRVC DCH   K ++ +  REI V
Sbjct: 706 EEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITV 765

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHFK G C+C  +W
Sbjct: 766 RDANRFHHFKNGTCNCGDFW 785



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 139/260 (53%), Gaps = 10/260 (3%)

Query: 9   GYC-QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           GYC ++ FD      VV  T ++   AKC  +  ARK+FD M  R+ ++W+AM+ GY   
Sbjct: 234 GYCVRRSFDN----GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289

Query: 68  GKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
              +EAL LF  M + D +    V++ SVL AC  L  L +GR  H YI +    + + L
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILL 349

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
           G  L+ MY+KCG ++ A+ FF  M  ++  ++++++ G   NG    +L +F +M+ +G+
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            P+  T + VL  C  +  ++ G   H   + R +  +  +     L+D+Y + G++  A
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI--CNALIDMYSKCGKISFA 467

Query: 246 LDVINKMPMKPHAGAWGALL 265
            +V N+M  +    +W A++
Sbjct: 468 REVFNRMD-RHDIVSWNAMI 486



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 5/260 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV   TA++   AKCG +  A+++F  M  RD +AWNAM+AG +  G   +A+ L   
Sbjct: 141 ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQ 200

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +  N  ++V VL       AL  G+  H Y  R      V +GT L+DMY+KC  
Sbjct: 201 MQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC 260

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLR 198
           +  A   F  M  RN  +W+++IGG   +   +++LELF  ++ +  + P  VT  SVLR
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +  +  GR+ H   ++    ++  L +   L+ +Y + G +D+A+   ++M  K  
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGSVLDILLGN--TLLSMYAKCGVIDDAIRFFDEMNPKDS 378

Query: 258 AGAWGALLNACRMYKNTEMG 277
             ++ A+++ C    N  + 
Sbjct: 379 V-SFSAIVSGCVQNGNAAVA 397



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 90/163 (55%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
            C  V LAR++FDE+P    I WN ++  YA  G    A+ L+H M    V+ N+ +   
Sbjct: 55  SCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPF 114

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC+ L A++ G   H + +   L+  V + TALVD Y+KCG + +A   F  M  R+
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD 174

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           V  W ++I G ++ G  + +++L   M++ G+ PN  T V VL
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL 217



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 2/177 (1%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L AC    +L + +  H +  +N      ++   L  +Y  C  +  A   F  +   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           V  W  +I   A NG  + +++L+  M   GVRPN+ T+  VL+ C  +  +E+G E   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           S  + +G+E  +     LVD Y + G L EA  + + M  +    AW A++  C +Y
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD-VVAWNAMIAGCSLY 188


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/456 (41%), Positives = 279/456 (61%), Gaps = 1/456 (0%)

Query: 7   CLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ 66
           C+G   ++    H PD V  + +I+A  +CG VD AR++F E  E+D + W AM+ GYA+
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAK 299

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
            G+  +AL LF+ M +  ++ +  ++ SV+S+C  L +L  G+  H       L   + +
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            +AL+DMYSKCG ++ A   F  M  RNV +W ++I G A NG  + +LELF  M Q   
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           +P+ VTF+ +L  C     +E+G+E+FDS+  ++G+ P L+HY C+V+L GR GR+++A+
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
            +I  M   P    W  LL+ C    +    E+A+R L EL+      Y++LSN+YA   
Sbjct: 480 ALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMG 539

Query: 307 NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
            W  V +VR +MK+K VKK  G S IE+D EVH F + D THP   +I   L  +  +L+
Sbjct: 540 RWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQ 599

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGV-PIRIVKNLRVCWDCH 425
             G+  NTN V++D+ E+EK  ++C HSEK+A+AFGLI    G+ PIRI+KN+R+C DCH
Sbjct: 600 EEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCH 659

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +  K  S++  R+II+RD NRFHHF  GKCSC   W
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 172/351 (49%), Gaps = 15/351 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G L   Q +FD + + D     A++SA AK G +   +  FD MP RD +++N  
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTT 126

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AG++     +E+L LF  MQ    +  E ++VS+L+A   L  L  G+  H  I     
Sbjct: 127 IAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNF 186

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V +  AL DMY+KCG + +A   F  + ++N+ +W  +I G A NG  EK + L   
Sbjct: 187 LGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ 246

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ +G  P++VT  +++   C  G V+E R  F    +E  I  W      ++  Y + G
Sbjct: 247 MRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEF-KEKDIVCW----TAMMVGYAKNG 301

Query: 241 RLDEALDVINKMPM---KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV- 296
           R ++AL + N+M +   +P +    +++++C    +   G+    K + L   N+   V 
Sbjct: 302 REEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI-LAGLNNNLLVS 360

Query: 297 -LLSNIYAESKNWDRVINVRQIMKAKGV----KKLPGCSVIEVDREVHEFF 342
             L ++Y++    D   +V  +M  + V      + GC+    D++  E F
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/440 (42%), Positives = 275/440 (62%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+   + ++    KCG+++ AR++F+E+P  D +AW  M++G  + G+   AL  +H M+
Sbjct: 1143 DLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMR 1202

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            +  V+ +E +  +++ AC+ L AL+QGR  H    +        + T+LVDMY+KCGN+ 
Sbjct: 1203 LSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIE 1262

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F       + +W ++I GLA +G  E++L+ F  MK  GV P+ VTF+ VL  C 
Sbjct: 1263 DARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACS 1322

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              GLV E  E+F SM++ YGIEP +EHY CLVD   RAGR+ EA  VI+ MP +  A  +
Sbjct: 1323 HSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMY 1382

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
              LLNACR+  + E G+  + KL+ LE  +  AYVLLSN+YA +  W+ V + R +M+  
Sbjct: 1383 RTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKA 1442

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
             VKK PG S +++  +VH F AGD +H   + I   +  I +R++  GY+ +T+  + D+
Sbjct: 1443 NVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDV 1502

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EEE+KE +L  HSEK+AIA+GL+       +R++KNLRVC DCH+  K ISKVF RE+++
Sbjct: 1503 EEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVL 1562

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD NRFHHF+ G CSC  YW
Sbjct: 1563 RDANRFHHFRSGVCSCGDYW 1582



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 127/255 (49%), Gaps = 4/255 (1%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D    T +I   +K G ++ A  +F      D  +WNAM+ GY   G   +AL L+ LMQ
Sbjct: 1042 DSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQ 1101

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                + N++++ +   A   L  L QG+     + +    + + + + ++DMY KCG M 
Sbjct: 1102 ESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEME 1161

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  +   +   WT++I G   NG  E +L  +  M+ + V+P+E TF ++++ C 
Sbjct: 1162 SARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221

Query: 202  VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            ++  +E+GR+ H ++++     +P++     LVD+Y + G +++A  +  K        +
Sbjct: 1222 LLTALEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLF-KRTNTSRIAS 1278

Query: 261  WGALLNACRMYKNTE 275
            W A++     + N E
Sbjct: 1279 WNAMIVGLAQHGNAE 1293



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 4/188 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKS 70
           ++    H PD      +I+  +KCG +  ARK+FD  P+  RD + WNA+L+ +A   K+
Sbjct: 651 RILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHAD--KA 708

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           R+  HLF L++   V     ++  V   C    +       H Y  +  L+  V +  AL
Sbjct: 709 RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGAL 768

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           V++Y+K G + +A   F GM  R+V  W  ++      G   ++L LFS   + G+RP++
Sbjct: 769 VNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDD 828

Query: 191 VTFVSVLR 198
           VT  ++ R
Sbjct: 829 VTLCTLAR 836



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 110/197 (55%), Gaps = 8/197 (4%)

Query: 53   DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
            D IAWN  L+ + Q G++ EA+  F  M    V  + ++ V +LS    L  L+ G+  H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 113  VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
              + R+ L   V++G  L++MY K G++++A   FW M E ++ +W ++I G A++G  E
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 173  KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG----LVEEGREHFDSMRREYGIEPWLEH 228
             S+ +F  + + G+ P++ T  SVLR C  +G    L  +   H  +M+    ++ ++  
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQ--IHACAMKAGVVLDSFVS- 1046

Query: 229  YGCLVDLYGRAGRLDEA 245
               L+D+Y ++G+++EA
Sbjct: 1047 -TTLIDVYSKSGKMEEA 1062



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 126/245 (51%), Gaps = 11/245 (4%)

Query: 29   MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
            +I+   K G V  AR +F +M E D ++WN M++G A  G    ++ +F  +    +  +
Sbjct: 947  LINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPD 1006

Query: 89   EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL----GTALVDMYSKCGNMNKAM 144
            + ++ SVL AC+ LG    G      I    +K  V L     T L+D+YSK G M +A 
Sbjct: 1007 QFTVASVLRACSSLGG---GCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAE 1063

Query: 145  DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC-CVV 203
              F      ++ +W +++ G  ++G   K+L L+ LM+++G R N++T  +  +    +V
Sbjct: 1064 FLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLV 1123

Query: 204  GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            GL +  +     ++R + ++ ++     ++D+Y + G ++ A  + N++P  P   AW  
Sbjct: 1124 GLKQGKQIQAVVVKRGFNLDLFV--ISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTT 1180

Query: 264  LLNAC 268
            +++ C
Sbjct: 1181 MISGC 1185


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/438 (42%), Positives = 282/438 (64%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +   A+I   AK G +D A  +F +M ++D ++W +++ GY+  G   EA+ LF  M+I 
Sbjct: 77  LVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRIS 136

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            V  +++++ SVLSAC  L  +D G+  H  + ++ L+ ++++  +LV MY+KCG++  A
Sbjct: 137 GVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDA 196

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M  R+V +WT++I G A NG G+ SL+ +  M   G +P+ +TF+ +L  C   
Sbjct: 197 NRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHN 256

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GL+  GR +F++M + YGI+P  EHY C++DL GR+G+L EA  ++N+M + P A  W A
Sbjct: 257 GLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKA 316

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR++K  E+GE+A++ L ELE  N   YV+LSN+Y+ +  W+    +R++M+++G+
Sbjct: 317 LLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGI 376

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
            K PG S IE + +V  F + D  HP  NEI   + EI   +K AGYV + +  ++D ++
Sbjct: 377 CKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDD 436

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           E KE  L  HSEK+A+AFGL+++ +G PIRI KNLRVC DCH   K  SKV+ R II+RD
Sbjct: 437 EVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRD 496

Query: 444 RNRFHHFKEGKCSCKGYW 461
            N FHHF EG+CSC  YW
Sbjct: 497 SNCFHHFTEGRCSCGDYW 514



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 119/213 (55%), Gaps = 2/213 (0%)

Query: 53  DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
           D ++WN+++ G  + G   +AL  F  M+  D+K++E ++ SVL++   +  +      H
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
             I +   +    +  AL+DMY+K G ++ A+  F  M +++V +WTS++ G + NG+ E
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           ++++LF  M+ +GV P+++   SVL  C  + +++ G++   ++ +  G+E  L     L
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLESSLSVDNSL 183

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V +Y + G + +A    + MP +    +W AL+
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTR-DVISWTALI 215



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 41/248 (16%)

Query: 3   AELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           AEL  + + Q++   +     E  +    ++++  AKCG +  A + FD MP RD I+W 
Sbjct: 153 AELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWT 212

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           A++ GYAQ G+ + +L  +  M     K + ++ + +L AC+H G L  GR    Y E  
Sbjct: 213 ALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGR---AYFE-- 267

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
                                   AMD  +G+K    + +  +I  L  +G   K  E  
Sbjct: 268 ------------------------AMDKVYGIKPGPEH-YACMIDLLGRSG---KLAEAK 299

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYG 237
            L+ Q  V P+ V + ++L  C V   +E G     + +  + +EP     Y  L ++Y 
Sbjct: 300 GLLNQMVVAPDAVVWKALLAACRVHKELELGEM---AAKNLFELEPMNSMPYVMLSNMYS 356

Query: 238 RAGRLDEA 245
            AG+ ++A
Sbjct: 357 AAGKWEDA 364


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/456 (41%), Positives = 279/456 (61%), Gaps = 1/456 (0%)

Query: 7   CLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ 66
           C+G   ++    H PD V  + +I+A  +CG VD AR++F E  E+D + W AM+ GYA+
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAK 299

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
            G+  +AL LF+ M +  ++ +  ++ SV+S+C  L +L  G+  H       L   + +
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
            +AL+DMYSKCG ++ A   F  M  RNV +W ++I G A NG  + +LELF  M Q   
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           +P+ VTF+ +L  C     +E+G+E+FDS+  ++G+ P L+HY C+V+L GR GR+++A+
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
            +I  M   P    W  LL+ C    +    E+A+R L EL+      Y++LSN+YA   
Sbjct: 480 ALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMG 539

Query: 307 NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
            W  V +VR +MK+K VKK  G S IE+D EVH F + D THP   +I   L  +  +L+
Sbjct: 540 RWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQ 599

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGV-PIRIVKNLRVCWDCH 425
             G+  NTN V++D+ E+EK  ++C HSEK+A+AFGLI    G+ PIRI+KN+R+C DCH
Sbjct: 600 EEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCH 659

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +  K  S++  R+II+RD NRFHHF  GKCSC   W
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 173/351 (49%), Gaps = 15/351 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G L   Q +FD + + D+    A++SA AK G +   +  FD MP RD +++N  
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTT 126

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AG++     +E+L LF  MQ    +  E ++VS+L+A   L  L  G+  H  I     
Sbjct: 127 IAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNF 186

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V +  AL DMY+KCG + +A   F  + ++N+ +W  +I G A NG  EK + L   
Sbjct: 187 LGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ 246

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ +G  P++VT  +++   C  G V+E R  F    +E  I  W      ++  Y + G
Sbjct: 247 MRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEF-KEKDIVCW----TAMMVGYAKNG 301

Query: 241 RLDEALDVINKMPM---KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV- 296
           R ++AL + N+M +   +P +    +++++C    +   G+    K + L   N+   V 
Sbjct: 302 REEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI-LAGLNNNLLVS 360

Query: 297 -LLSNIYAESKNWDRVINVRQIMKAKGV----KKLPGCSVIEVDREVHEFF 342
             L ++Y++    D   +V  +M  + V      + GC+    D++  E F
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/461 (39%), Positives = 287/461 (62%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            Y + G +   Q++F+ + E D+V    ++S       +D A+  F+EMPE++ ++W  M
Sbjct: 337 FYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIM 396

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G AQ G + EAL  F+ M++   +  + +    + +C+ LG+L  GR  H  + R   
Sbjct: 397 ISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGY 456

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           + +++ G AL+ MY++CG ++ A   F  M   +  +W ++I  L  +G G +++ELF  
Sbjct: 457 ESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEE 516

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + G+ P+ ++F++V+  C   GLV+EGR++FDSM   YG+ P  EHY  ++DL  RAG
Sbjct: 517 MLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAG 576

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +  EA +V+  MP +P A  W ALL  CR++ N ++G  A+ +L EL+ ++ G YVLLSN
Sbjct: 577 KFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSN 636

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA +  W+ +  VR++M+ +GVKK PGCS IEV+ +VH F  GD  HP   +I   L +
Sbjct: 637 MYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQ 696

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   ++  GYV +T  V++D+E + KE  L  HSEK+A+A+G + L  G  +R+ KNLR+
Sbjct: 697 LVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRI 756

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+  K +SKV  REI+VRD  RFHHF++GKCSC  YW
Sbjct: 757 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 143/311 (45%), Gaps = 38/311 (12%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +K+FD +   D +  T +I+   K  D+D A++  +   ++  +AWNAM++GYA  G   
Sbjct: 212 RKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYL 271

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY----IERNRLKMTVTLG 127
           EA  +F  M +  ++L+E +  SV+S C + G    G+  H Y    +      + + + 
Sbjct: 272 EAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVN 331

Query: 128 TALVDMYSKCGN-------------------------------MNKAMDFFWGMKERNVY 156
            AL+  Y KCG                                M++A  FF  M E+N+ 
Sbjct: 332 NALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNIL 391

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W  +I GLA  G  E++L+ F+ MK  G  P +  F   +  C V+G ++ GR+    +
Sbjct: 392 SWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQV 451

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY-KNTE 275
            R YG E  L     L+ +Y R G +D A  +   MP    A +W A++ A   + + T+
Sbjct: 452 VR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPCV-DAISWNAMIAALGQHGQGTQ 509

Query: 276 MGELASRKLVE 286
             EL    L E
Sbjct: 510 AIELFEEMLKE 520



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 50/370 (13%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWN 58
           +Y++   L Y + +FD I +PD+V +T +I+A +  GD+ L+RK+F + P   RD + +N
Sbjct: 57  IYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYN 116

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIER 117
           AM+  Y+       A+ LF  MQ  + + +  +  SVL A   +   ++  +  H  + +
Sbjct: 117 AMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVK 176

Query: 118 NRLKMTVTLGTALVDMYSKCGN---------MNKAMDFFWGMKERNVYTWTSVIGGLA-- 166
           +      ++  AL+  Y KC           M +A   F  M  R+  +WT++I G    
Sbjct: 177 SGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKN 236

Query: 167 ---------MNGAGEK--------------------SLELFSLMKQAGVRPNEVTFVSVL 197
                    +NG  +K                    + E+F  M  + ++ +E TF SV+
Sbjct: 237 NDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVI 296

Query: 198 RGCCVVGLVEEGRE---HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
             C   G    G+E   +F         +  +     L+  Y + G++D A ++ NKMP 
Sbjct: 297 SVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPE 356

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +    +W  +L+    Y N    + A     E+  KN  +++++ +  A+    +  +  
Sbjct: 357 RDLV-SWNIILSG---YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKF 412

Query: 315 RQIMKAKGVK 324
              MK +G +
Sbjct: 413 FNRMKLQGFE 422


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/458 (41%), Positives = 286/458 (62%), Gaps = 11/458 (2%)

Query: 15  FDGIHEP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ------ 66
           F G H    D V   A++   A+CG +   R++FD +   D  AWNA+L+ YA+      
Sbjct: 148 FLGAHAASCDRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDV 207

Query: 67  -CGKSRE--ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
            C  S     L LF  M    ++ NE+++V+V+ AC  LGA+  G WAH Y  + RL + 
Sbjct: 208 ACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVN 267

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             + TALV+MY+ CG ++ A   F    +R+   + +++ GLA++G G  +L L   M  
Sbjct: 268 CIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHG 327

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           AGV  + VT +SV+  C   GLV+EG ++FD M  E+GIEP +EHYGC++D+  RAGRL+
Sbjct: 328 AGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLN 387

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
            A  +I++M + P+A  + +L+ AC ++   E+GE    +L+ LE  + G +VL+SN YA
Sbjct: 388 NAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYA 447

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            +  W+     R+ MK+ G+ K PG S+++++  +HEF  GD+THP   EI  M+ EI  
Sbjct: 448 RTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIET 507

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           RL   G  ++T+  ++D+EEE+K DTL  HSE++AIAF LI+   G PIRI+KNLRVC D
Sbjct: 508 RLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCAD 567

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH+  K++S+V+ REI++RDR RFHHF++G CSC  +W
Sbjct: 568 CHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 605


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/442 (43%), Positives = 281/442 (63%), Gaps = 10/442 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    + I+   KCG V+  R++FDEMP +  I WNA+++GY+Q G + + L LF  M+
Sbjct: 187 EVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMK 246

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  +  ++VSVLS+C HLGA   G+     +E N     V L  AL+ MY++CGN+ 
Sbjct: 247 SSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLA 306

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA   F  M  +++ +WT++IG   M+G GE  L LF  M + G+RP+   FV VL  C 
Sbjct: 307 KARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACS 366

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL ++G E F +M+REY +EP  EHY CLVDL GRAGRLDEA++ I+ MP++P    W
Sbjct: 367 HSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVW 426

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL AC+++KN +M ELA  K++E E  N G YVL+SNIY++SKN + +  +R +M+ +
Sbjct: 427 GALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRER 486

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI-SRRLKLAGYVANTNPVMYD 380
             +K PG S +E   +VH F AGD +H +  E+  ML E+ +  ++LAG +        D
Sbjct: 487 AFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM--------D 538

Query: 381 IEE-EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            +  EE   T  +HSE++AIAFG+++   G  I ++KNLRVC DCH   K++SK+ +R  
Sbjct: 539 CDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRF 598

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD +RFH+FK+G CSCK YW
Sbjct: 599 VVRDASRFHYFKDGVCSCKDYW 620



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 7/303 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA--WNAMLAGYAQCGKSREALHLF 77
           EP V+  TA+IS   KCG V+ ARK+F+E P    +   +NA+++GY    K  +A  +F
Sbjct: 84  EPFVL--TALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMF 141

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M+   V ++ V+++ ++  CT    L  GR  H    +      V +  + + MY KC
Sbjct: 142 RRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKC 201

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++      F  M  + + TW +VI G + NG     LELF  MK +GV P+  T VSVL
Sbjct: 202 GSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVL 261

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  +G  + G+E    +    G  P +     L+ +Y R G L +A  V + MP+K  
Sbjct: 262 SSCAHLGAKKIGQE-VGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSL 320

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA-YVLLSNIYAESKNWDRVINVRQ 316
             +W A++    M+   E G      +++   +  GA +V++ +  + S   D+ + + +
Sbjct: 321 V-SWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFR 379

Query: 317 IMK 319
            MK
Sbjct: 380 AMK 382



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 14/219 (6%)

Query: 56  AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
           +WN  L   A      E++ L+  M       +  S   +L +C  L     G+  H ++
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT------WTSVIGGLAMNG 169
            R   +    + TAL+ MY KCG +  A   F    E N ++      + ++I G   N 
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVF----EENPHSSQLGVCYNALISGYTANS 132

Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEH 228
               +  +F  MK+ GV  + VT + ++  C V   +  GR  H + ++   G    +  
Sbjct: 133 KVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKG--GTYSEVAV 190

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
               + +Y + G ++    + ++MP+K     W A+++ 
Sbjct: 191 LNSFITMYMKCGSVESGRRLFDEMPVKGLI-TWNAVISG 228


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/463 (41%), Positives = 287/463 (61%), Gaps = 8/463 (1%)

Query: 5   LGCLGYCQKVFD-----GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           L CLG  +++       G+ +P  V Q  +I    +CG +D A ++F+ +  +D ++W +
Sbjct: 375 LNCLGKIKEIHGYTIRGGLSDP--VLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTS 432

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M++ Y   G + +AL +F  M+   ++ + V++VS+LSA   L  L +G+  H +I R  
Sbjct: 433 MISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKG 492

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
             +  ++   LVDMY++CG++  A   F   K RN+  WT++I    M+G GE ++ELF 
Sbjct: 493 FILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFM 552

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            MK   + P+ +TF+++L  C   GLV EG+   + M+ EY +EPW EHY CLVDL GR 
Sbjct: 553 RMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRR 612

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
             L+EA  ++  M  +P    W ALL ACR++ N E+GE+A+ KL+EL+  N G YVL+S
Sbjct: 613 NCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVS 672

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N++A +  W  V  VR  MK  G+ K PGCS IEV  ++H F + D+ HP  ++I   L 
Sbjct: 673 NVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLA 732

Query: 360 EISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           +++ +LK   GYVA T  V++++ EEEK   L  HSE++AIA+GL++  EG PIR+ KNL
Sbjct: 733 QVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNL 792

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH    ++S+ F RE+IVRD +RFHHFK+G CSC  +W
Sbjct: 793 RVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 145/281 (51%), Gaps = 6/281 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +++    +I   AKC  +    + FD M  +D I+W    AGYAQ     +AL L   
Sbjct: 293 DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQ 352

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +Q+  + ++   + S+L AC  L  L + +  H Y  R  L   V L   ++D+Y +CG 
Sbjct: 353 LQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPV-LQNTIIDVYGECGI 411

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F  ++ ++V +WTS+I     NG   K+LE+FS MK+ G+ P+ VT VS+L  
Sbjct: 412 IDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSA 471

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C +  +++G+E H   +R+ + +E  + +   LVD+Y R G +++A  +      + + 
Sbjct: 472 VCSLSTLKKGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSVEDAYKIFTCTKNR-NL 528

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
             W A+++A  M+   E   EL  R   E    +H  ++ L
Sbjct: 529 ILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLAL 569



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 3/245 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+++   + G +  A  +F  +  +D + WN+ML G+ Q G   EAL  F+ +Q
Sbjct: 194 DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D+K ++VS++S++ A   LG L  G+  H Y  +N     + +G  L+DMY+KC  M+
Sbjct: 254 NADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMS 313

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                F  M  +++ +WT+   G A N    ++LEL   ++  G+  +     S+L  C 
Sbjct: 314 YGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACR 373

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +  + + +E      R    +P L++   ++D+YG  G +D A+ +   +  K    +W
Sbjct: 374 GLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECKDVV-SW 430

Query: 262 GALLN 266
            ++++
Sbjct: 431 TSMIS 435



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 4/218 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           V    ++++  AKC D++ ARK+FD M  R D ++WN++++ Y+  G   EAL LF  M 
Sbjct: 93  VFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEML 152

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N  +  + L AC     +  G   H  I ++   + V +  ALV MY + G M 
Sbjct: 153 KAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMP 212

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  ++ +++ TW S++ G   NG   ++LE F  ++ A ++P++V+ +S++    
Sbjct: 213 EAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG 272

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            +G +  G+E H  +++   G +  +     L+D+Y +
Sbjct: 273 RLGYLLNGKEIHAYAIKN--GFDSNILVGNTLIDMYAK 308



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
            KCG V  A  +FD+M ER    WNAM+ GY   G++  AL ++  M+   V  +  +  
Sbjct: 3   GKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFP 62

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            +L AC  +  L  G   H    +      V +  +LV +Y+KC ++N A   F  M  R
Sbjct: 63  VLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVR 122

Query: 154 N-VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           N V +W S+I   + NG   ++L LFS M +AGV  N  TF + L+ C     ++ G + 
Sbjct: 123 NDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQI 182

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           H   ++    ++ ++ +   LV +Y R G++ EA  +   +  K     W ++L  
Sbjct: 183 HAAILKSGRVLDVYVAN--ALVAMYVRFGKMPEAAVIFGNLEGKDIV-TWNSMLTG 235



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG++  A   F  M ER+++TW +++GG   NG    +LE++  M+  GV  +  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           F  +L+ C +V  +  G E    +  +YG + ++     LV LY +   ++ A  + ++M
Sbjct: 61  FPVLLKACGIVEDLFCGAE-IHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 253 PMKPHAGAWGALLNA 267
            ++    +W ++++A
Sbjct: 120 YVRNDVVSWNSIISA 134


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/461 (42%), Positives = 287/461 (62%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y + G +   + +F+ + +  V    AM+    + G VD A+ MF+ M  RD   W+AM+
Sbjct: 246 YIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMI 305

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
             Y Q     EAL  F  M    ++ N  S +S+L+ C  L   D GR  H  + R    
Sbjct: 306 KVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFD 365

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V   +AL+ MY KCGN++KA   F   + ++V  W S+I G A +G GE++L +F  +
Sbjct: 366 TDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDL 425

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           + A + P+ +T++ VL  C   G V+EGRE F+SM     I     HY C+VDL GRAG 
Sbjct: 426 RLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGL 485

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           +DEALD+IN MP++P A  WGAL+ ACRM+KN E+ E+A++KL+ELE  + G YVLLS+I
Sbjct: 486 VDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHI 545

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE-THPRYNEIEVMLGE 360
           Y  +  W+   ++R+ + ++ + K PGCS IE ++ VH F +GD  +HP +  I  ML E
Sbjct: 546 YTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEE 605

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L  +GY A+ + V++D++EE+K  +L  HSE+ A+A+GL+ +  G+PIR++KNLRV
Sbjct: 606 LDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRV 665

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K+I+K+ +REII+RD NRFHHFK+G CSC+ YW
Sbjct: 666 CGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 9/249 (3%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           + + G +   +K+FD + + DVV +TAM+S   + G +  AR +FDEMP+R+ ++W AM+
Sbjct: 153 FLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMI 212

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +GYAQ GK   A  LF +M       NEVS  ++L      G ++        +  +   
Sbjct: 213 SGYAQNGKVILARKLFEVMP----DRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDH--- 265

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V    A++  + + G ++ A   F  M  R+  TW+++I     N    ++L  F  M
Sbjct: 266 -PVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREM 324

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
              G+RPN  +F+S+L  C  +   + GRE   +M R    +  +     L+ +Y + G 
Sbjct: 325 LCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR-CSFDTDVFAVSALITMYIKCGN 383

Query: 242 LDEALDVIN 250
           LD+A  V N
Sbjct: 384 LDKAKRVFN 392



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 129/312 (41%), Gaps = 69/312 (22%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P VV   A I+   + G+++ AR  FD MP R   ++NA++AGY +      AL LFH M
Sbjct: 15  PAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRM 74

Query: 81  QIHD-----------------------------VKLNEVSMVSVLSACTHLGAL-DQGRW 110
              D                             +  + VS  S+L      G L D  R 
Sbjct: 75  PSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRL 134

Query: 111 AHVYIERNRLKMTVTLG--------------------------TALVDMYSKCGNMNKAM 144
            H   ERN +  TV LG                          TA++  Y + G + +A 
Sbjct: 135 FHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEAR 194

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M +RNV +WT++I G A NG    + +LF +M       NEV++ ++L G    G
Sbjct: 195 ALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEVSWTAMLVGYIQAG 250

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
            VE+  + F++M       P       +V  +G+ G +D A  +  +M  +   G W A+
Sbjct: 251 HVEDAEDLFNAMPD----HPVAACNAMMVG-FGQHGMVDAAKAMFERMCARDD-GTWSAM 304

Query: 265 LNACRMYKNTEM 276
           +   ++Y+  E 
Sbjct: 305 I---KVYEQNEF 313


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/473 (42%), Positives = 286/473 (60%), Gaps = 36/473 (7%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY------------------- 64
           VC +A++S  AKC  V  AR +FD MP RD ++WN +L  Y                   
Sbjct: 302 VC-SALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 360

Query: 65  ----------------AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
                            + G+S EA+ +F  MQ    K NE+++ S+L AC+    L  G
Sbjct: 361 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMG 420

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           +  H Y+ R+     +T  TAL+ MY+KCG++N + + F  M+ ++V  W ++I   AM+
Sbjct: 421 KEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMH 480

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G G+++L LF  M  + V+PN VTF  VL GC    LVEEG + F+SM R++ +EP   H
Sbjct: 481 GNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANH 540

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           Y C+VD+Y RAGRL+EA   I  MPM+P A AWGALL ACR+YKN E+ +++++KL E+E
Sbjct: 541 YSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIE 600

Query: 289 TKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETH 348
             N G YV L NI   +K W     VR +MK +G+ K PGCS ++V  +VH F  GD+++
Sbjct: 601 PNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSN 660

Query: 349 PRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKE 408
              ++I   L E+  ++K+AGY  +T+ V+ DI++EEK ++LC HSEK+A+AFG+++L  
Sbjct: 661 IESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNG 720

Query: 409 GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              IR+ KNLR+C DCH+  K +SKV    I+VRD  RFHHFK G CSCK  W
Sbjct: 721 QSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 140/303 (46%), Gaps = 34/303 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I A  KC  V+ AR++FD++  RD ++W ++ + Y +CG  R+ + +F  M 
Sbjct: 198 DVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMG 257

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK N +++ S+L AC  L  L  G+  H +  R+ + + + + +ALV +Y+KC ++ 
Sbjct: 258 WSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVR 317

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  M  R+V +W  V+     N   EK   LF  M + GVR +E T+ +V+ GC 
Sbjct: 318 EARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 377

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G  EE  E F  M+                                 KM  KP+    
Sbjct: 378 ENGRSEEAVEMFRKMQ---------------------------------KMGFKPNEITI 404

Query: 262 GALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
            ++L AC   +N  MG E+        +  +  +   L  +YA+  + +   NV  +M+ 
Sbjct: 405 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 464

Query: 321 KGV 323
           K V
Sbjct: 465 KDV 467



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 6/248 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I      GD + AR++FD +P+ DP   + +++     G S EA+ ++  +Q   +K +
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
               ++   AC   G   + +  H    R  +   V +G AL+  Y KC  +  A   F 
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            +  R+V +WTS+       G   K +++F  M  +GV+PN +T  S+L  C  +  ++ 
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G+E H  ++R  +G+   L     LV LY +   + EA  V + MP +    +W  +L A
Sbjct: 284 GKEIHGFAVR--HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTA 340

Query: 268 CRMYKNTE 275
              +KN E
Sbjct: 341 --YFKNKE 346



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 48/93 (51%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LG  L+ +    G+ N+A   F  + + +  T +++I  L  +G   ++++++S +++ G
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           ++P+   F++  + C V G     +E  D   R
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDATR 192


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 274/440 (62%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+  Q A+++  +KCG+++ A   F++    D IAWNA+++G+ Q G + EAL +F  M 
Sbjct: 608  DLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMN 667

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +  N  +  S + A +    + QG+  H  I +        +  A++ MY+KCG+++
Sbjct: 668  REGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSIS 727

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  +  +N  +W ++I   + +G G ++L+ F  M  + VRPN VT V VL  C 
Sbjct: 728  DAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 787

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             +GLV++G E+F+SM  EYG+ P  EHY C+VD+  RAG L  A D I +MP++P A  W
Sbjct: 788  HIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVW 847

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
              LL+AC ++KN E+GE A+  L+ELE ++   YVLLSN+YA  + WD     RQ MK K
Sbjct: 848  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEK 907

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            GVKK PG S IEV   +H F+ GD+ HP  +EI     ++++R    GYV +   ++ ++
Sbjct: 908  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSEL 967

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            ++E+K+ T+  HSEK+AI+FGL+SL   +PI ++KNLRVC DCHD  K +SKV NREIIV
Sbjct: 968  QQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIV 1027

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD  RFHHF+ G CSCK YW
Sbjct: 1028 RDAYRFHHFEGGACSCKDYW 1047



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 2/248 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+++  AKC D++ A   F E    + + WN ML  Y      R +  +F  MQI ++  
Sbjct: 412 ALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 471

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N+ +  S+L  C  LG L+ G   H  I +   ++   + + L+DMY+K G ++ A D  
Sbjct: 472 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
                ++V +WT++I G       +K+L  F  M   G+R +EV   + +  C  +  ++
Sbjct: 532 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 591

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG++   +     G    L     LV LY + G ++EA     +     +  AW AL++ 
Sbjct: 592 EGQQ-IHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNI-AWNALVSG 649

Query: 268 CRMYKNTE 275
            +   N E
Sbjct: 650 FQQSGNNE 657



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 132/271 (48%), Gaps = 5/271 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G      VC  A++S     G +  A  +F  M +RD + +N ++ G +QCG   +A+ L
Sbjct: 301 GFSSDTYVCN-ALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 359

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ+  ++ +  ++ S++ AC+  G L  G+  H Y  +        +  AL+++Y+K
Sbjct: 360 FKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAK 419

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C ++  A+++F   +  NV  W  ++    +      S  +F  M+   + PN+ T+ S+
Sbjct: 420 CSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 479

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L+ C  +G +E G + H   ++  + +  ++     L+D+Y + G+LD A D++ +   K
Sbjct: 480 LKTCIRLGDLELGEQIHSQIIKTSFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK 537

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVE 286
               +W  ++     Y   +      R++++
Sbjct: 538 D-VVSWTTMIAGYTQYNFDDKALTTFRQMLD 567



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 126/264 (47%), Gaps = 3/264 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   + Q +         VC + +I   AK G +D A  +      +D ++W  M+AG
Sbjct: 490 ELGEQIHSQIIKTSFQLNAYVC-SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 548

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y Q     +AL  F  M    ++ +EV + + +SAC  L AL +G+  H     +     
Sbjct: 549 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 608

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           +    ALV +YSKCGN+ +A   F   +  +   W +++ G   +G  E++L +F+ M +
Sbjct: 609 LPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNR 668

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            G+  N  TF S ++       +++G++   ++  + G +   E    ++ +Y + G + 
Sbjct: 669 EGIDSNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNAIISMYAKCGSIS 727

Query: 244 EALDVINKMPMKPHAGAWGALLNA 267
           +A     ++ MK    +W A++NA
Sbjct: 728 DAKKQFLELSMKNEV-SWNAMINA 750



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           ++ G+ +  +VC   +I   ++ G VD AR++FD +  +D  +W AM++G ++     EA
Sbjct: 197 IYQGLGKSTIVCN-PLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEA 255

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  M +  +     +  SVLSAC  + +L+ G   H  + +        +  ALV +
Sbjct: 256 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL 315

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y   G++  A   F  M +R+  T+ ++I GL+  G GEK++ELF  M+  G+ P+  T 
Sbjct: 316 YFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTL 375

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            S++  C   G +  G++ H  + +  +     +E  G L++LY +   ++ AL+   + 
Sbjct: 376 ASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE--GALLNLYAKCSDIETALNYFLET 433

Query: 253 PMKPHAGAWGALL----------NACRMYKNTEMGELASRK 283
            ++ +   W  +L          N+ R+++  ++ E+   +
Sbjct: 434 EVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 473



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 7/234 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           GD+D A K+FDEMPER    WN M+   A    S +   LF  M   +V  NE +   VL
Sbjct: 117 GDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVL 176

Query: 97  SACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
            AC     A D     H  I    L  +  +   L+D+YS+ G +++A   F G+  ++ 
Sbjct: 177 EACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDH 236

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W ++I GL+ N    +++ LF  M   G+ P    F SVL  C  +  +E G E    
Sbjct: 237 SSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHG 295

Query: 216 MRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +  + G     + Y C  LV LY   G L  A  + + M  +  A  +  L+N 
Sbjct: 296 LVLKLGFSS--DTYVCNALVSLYFHLGSLISAEHIFSNMSQRD-AVTYNTLING 346



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 2/184 (1%)

Query: 85  VKLNEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           ++ N  ++  +L  C    G+LD+GR  H  I +        L   L+D Y   G+++ A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
           +  F  M ER ++TW  +I  LA      K   LF  M    V PNE TF  VL  C   
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGG 182

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            +  +  E   +     G+         L+DLY R G +D A  V + + +K H+ +W A
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHS-SWVA 241

Query: 264 LLNA 267
           +++ 
Sbjct: 242 MISG 245


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/442 (42%), Positives = 282/442 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E   V  +++     K G +    K+   MP R  +AWN ++AG AQ G   E L+ +++
Sbjct: 226 ELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNM 285

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++   + ++++ VSVLSAC+ L  L QG+  H  + +      + + ++L+ MYS+ G 
Sbjct: 286 MKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGC 345

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  ++  F   +  +V  W+S+I     +G GE++LELF  M+   +  NEVTF+S+L  
Sbjct: 346 LEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYA 405

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL E+G E+FD M ++Y ++P +EHY C+VDL GRAGRL+EA  +I  MP++P   
Sbjct: 406 CSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGI 465

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL AC+++K  EM E  S ++++L+  +  +YVLLSNI+A ++NW  V  +R+ M+
Sbjct: 466 IWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMR 525

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            + V+K PG S +E+   VH+F  GD++HP+Y EI++ L E+   LK  GYV     V++
Sbjct: 526 DRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLH 585

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D++ EEKE  L  HSEK AIAF L++  E VPIR++KNLRVC DCH+  K IS++ NREI
Sbjct: 586 DMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREI 645

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD +RFHHFK+G+CSC  YW
Sbjct: 646 IVRDASRFHHFKDGECSCGNYW 667



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 134/247 (54%), Gaps = 3/247 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            Y++LG       +F  +   +V+    +I+   + GD++ A+K+FDEM ER+   WNAM
Sbjct: 106 FYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAM 165

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AG  Q   +++AL LF  M       +E ++ SVL  C  L +L  G+  H  + +   
Sbjct: 166 IAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGF 225

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +++  +G++L  MY K G+++        M  R V  W ++I G A NG  E+ L  +++
Sbjct: 226 ELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNM 285

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           MK AG RP+++TFVSVL  C  +  + +G++ H + ++   G    L     L+ +Y R+
Sbjct: 286 MKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKA--GASSVLAVVSSLISMYSRS 343

Query: 240 GRLDEAL 246
           G L++++
Sbjct: 344 GCLEDSI 350



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 81/146 (55%), Gaps = 5/146 (3%)

Query: 3   AELGCLGYCQKVFDGIHEPD----VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           +EL  LG  Q++   + +      +   +++IS  ++ G ++ + K F +    D + W+
Sbjct: 306 SELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWS 365

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIER 117
           +M+A Y   G+  EAL LFH M+   ++ NEV+ +S+L AC+H G  ++G  +  + +++
Sbjct: 366 SMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKK 425

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKA 143
            +LK  +   T +VD+  + G + +A
Sbjct: 426 YKLKPRIEHYTCVVDLLGRAGRLEEA 451



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 38/221 (17%)

Query: 81  QIHDVKLNEV----SMVS-VLSACTHLGALDQGRWAHV-----------YIERNRLKMTV 124
           Q +D   +E+    S+ S +L +C  LG+L  G+  H            +I  + L    
Sbjct: 49  QAYDTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYS 108

Query: 125 TLG--------------------TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
            LG                      L++ Y + G++  A   F  M ERN+ TW ++I G
Sbjct: 109 KLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAG 168

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
           L      +++L LF  M   G  P+E T  SVLRGC  +  +  G+E    + +  G E 
Sbjct: 169 LTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLK-CGFEL 227

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                  L  +Y ++G L +   +I  MP++    AW  L+
Sbjct: 228 SSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT-VVAWNTLI 267


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 275/442 (62%), Gaps = 7/442 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+   +++I   AKC  V  + ++F  + ERD I+WN+++AG  Q G   E L  F  
Sbjct: 271 DADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQ 330

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  +K    S  S++ AC HL  L  G+  H YI RN     + + ++LVDMY+KCGN
Sbjct: 331 MLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGN 390

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M+ R++ +WT++I G A++G    ++ELF  M+  G++       +VL  
Sbjct: 391 IRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTA 443

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+E  ++F+SM R++GI P +EHY  + DL GRAGRL+EA D I  M + P   
Sbjct: 444 CSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGS 503

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL+ACR++KN +M E  + +++E++  N GAY+LL+NIY+ ++ W      R  M+
Sbjct: 504 IWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMR 563

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G++K P CS IEV  +V+ F AGDE+HP Y +I   +  +   ++  GYV +T+ V +
Sbjct: 564 RIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHH 623

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEE+K+  +C HSE++AI FG+I+   G+ IR+ KNLRVC DCH  TK ISK+  REI
Sbjct: 624 DVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREI 683

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD +RFHHFK G CSC  YW
Sbjct: 684 VVRDNSRFHHFKNGTCSCGDYW 705



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 117/232 (50%), Gaps = 2/232 (0%)

Query: 40  DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
           D  RK+F+ MPE+D ++WN ++AG A+ G   E L +   M   ++K +  ++ SVL   
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLI 249

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
                + +G+  H    R  L   + + ++L+DMY+KC  +  +   F  + ER+  +W 
Sbjct: 250 AENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWN 309

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           S+I G   NG  ++ L  F  M  A ++P   +F S++  C  +  +  G++    + R 
Sbjct: 310 SIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN 369

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            G +  +     LVD+Y + G +  A  + ++M ++    +W A++  C ++
Sbjct: 370 -GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMV-SWTAMIMGCALH 419



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 36/258 (13%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
           ++F+ +     +AW +++  Y   G   ++L  F  M    +  +     SVL +C  L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA-------------------- 143
            L+ G   H YI R  L   +  G AL++MYSK   + ++                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 144 ------------MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
                          F  M E+++ +W ++I G A NG  E++L +   M  A ++P+  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T  SVL        +  G+E H  S+R+  G++  +     L+D+Y +  R+ ++  V  
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCRVFT 298

Query: 251 KMPMKPHAGAWGALLNAC 268
            +  +    +W +++  C
Sbjct: 299 LLTERD-GISWNSIIAGC 315


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/493 (40%), Positives = 287/493 (58%), Gaps = 32/493 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVD-------------------- 40
            YA+ G L   Q++F  +   DVV   AMI+ C+  G  D                    
Sbjct: 153 FYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSST 212

Query: 41  ------------LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
                        ARK+FD M  R+ ++W+AM+ GY      +EAL +F +MQ+  +  +
Sbjct: 213 IVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPD 272

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             +M+ VL AC+HL AL  G  +H Y+          +  AL+DMYSKCG ++ A + F 
Sbjct: 273 LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFN 332

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M   ++ +W ++I G  ++G G ++L LF  +   G++P+++TF+ +L  C   GLV E
Sbjct: 333 RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVME 392

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           GR  FD+M R++ I P +EH  C+VD+ GRAG +DEA   I  MP +P    W ALL+AC
Sbjct: 393 GRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSAC 452

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R++KN E+GE  S+K+  L  ++ G +VLLSNIY+ +  WD   ++R   K  G+KK+PG
Sbjct: 453 RIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPG 512

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKED 388
           CS IE++  VH F  GD++H + ++I   L E+   +K  GY A  + V  D+EEEEKE 
Sbjct: 513 CSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQ 572

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
            L  HSEK+AIAFG+++LK G PI + KNLRVC DCH   K ++ +  REI VRD NRFH
Sbjct: 573 ILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFH 632

Query: 449 HFKEGKCSCKGYW 461
           HFK G C+C  +W
Sbjct: 633 HFKNGTCNCGDFW 645



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 121/249 (48%), Gaps = 17/249 (6%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
            C  V LAR++FDE+P    I WN ++  YA  G    A+ L+H M    V+ N+ +   
Sbjct: 55  SCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPF 114

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC+ L A++ G   H + +   L+  V + TALVD Y+KCG + +A   F  M  R+
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD 174

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC-CVVGLVEEGREHF 213
           V  W ++I G ++ G  + +++L   M++ G+ PN  T V VL  C C++      R+ F
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLL----YARKIF 230

Query: 214 DSM--RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK---PHAGAWGALLNAC 268
           D M  R E         +  ++  Y  +  + EALD+   M +    P       +L AC
Sbjct: 231 DVMGVRNEVS-------WSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPAC 283

Query: 269 RMYKNTEMG 277
                 + G
Sbjct: 284 SHLAALQHG 292



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 2/177 (1%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L AC    +L + +  H +  +N      ++   L  +Y  C  +  A   F  +   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           V  W  +I   A NG  + +++L+  M   GVRPN+ T+  VL+ C  +  +E+G E   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           S  + +G+E  +     LVD Y + G L EA  + + M  +    AW A++  C +Y
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD-VVAWNAMIAGCSLY 188


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/452 (43%), Positives = 277/452 (61%), Gaps = 3/452 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERD-PIAWNAMLAGYAQCGK 69
           +V     E D   +++++    KCG ++ A  +FD      RD   AW+ M+AGY Q G+
Sbjct: 269 RVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGR 328

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EAL LF  M    V  +  ++ SV +AC ++G ++QGR  H  +E+   K+   L +A
Sbjct: 329 EEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASA 388

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           +VDMY+KCGN+  A   F     +N+  WTS++   A +G G  ++ELF  M    + PN
Sbjct: 389 IVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPN 448

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E+T V VL  C  VGLV EG  +F  M+ EYGI P +EHY C+VDLYGR+G LD+A + I
Sbjct: 449 EITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFI 508

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            +  +   A  W  LL+ACR++++ E  +LAS KLV+LE  + G+YV+LSNIYA +  W 
Sbjct: 509 EENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWH 568

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
               +R  M+ + V+K PG S I +   VH F AGD +HP+  EI   L ++  RLK  G
Sbjct: 569 DTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIG 628

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           Y + T+ V++D+E+E++E  L  HSEK+AIAFG+IS   G P+RI KNLRVC DCH+  K
Sbjct: 629 YTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIK 688

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            IS    REI+VRD  RFHHFK+  CSC+ +W
Sbjct: 689 YISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 142/296 (47%), Gaps = 8/296 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G     ++VF  + E D V     I AC + GD+  + ++FDE P RD  +WN +
Sbjct: 156 MYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTI 215

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G  + G + +AL     M    V  N  +  +       L   D GR  H  +    L
Sbjct: 216 ISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAAL 275

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNV-YTWTSVIGGLAMNGAGEKSLEL 177
           +    + ++L+DMY KCG +  A   F  W    R++ + W++++ G   NG  E++L+L
Sbjct: 276 EGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDL 335

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLY 236
           F  M + GV  +  T  SV   C  VG+VE+GR+ H    +  Y ++  L     +VD+Y
Sbjct: 336 FRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLA--SAIVDMY 393

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKN 291
            + G L++A  + ++   K +   W ++L +   +    +  EL  R   E  T N
Sbjct: 394 AKCGNLEDARSIFDRACTK-NIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPN 448



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACT 100
           AR +FDE P R    W   ++G A+ G+  + +  F  ++   +   N   + +V+  C 
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
            +G ++ G+  H ++ RN + + V L  A++DMY+KCG   +A   F  M ER+  +W  
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 161 VIGGLAMNGAGEKSLELF 178
            IG    +G    S++LF
Sbjct: 184 AIGACIQSGDILGSMQLF 201


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/450 (42%), Positives = 278/450 (61%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            +V+   +  DV    A+++  A+CG    A  +F+ +  +D I WN M++G+AQ G   
Sbjct: 470 SRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYE 529

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EAL +F  M    VK N  + VS +SA  +L  + QG+  H  + +        +  AL+
Sbjct: 530 EALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALI 589

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
            +Y KCG++  A   F+ M ERN  +W ++I   + +G G ++L+LF  MKQ G++PN+V
Sbjct: 590 SLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDV 649

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TF+ VL  C  VGLVEEG  +F SM  E+GI P  +HY C+VD+ GRAG+LD A   + +
Sbjct: 650 TFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEE 709

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP+  +A  W  LL+ACR++KN E+GELA++ L+ELE  +  +YVLLSN YA +  W   
Sbjct: 710 MPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACR 769

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
            +VR++MK +GV+K PG S IEV   VH FF GD  HP  ++I   L ++  RL   GY+
Sbjct: 770 DHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYI 829

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
                + ++ E+E+K+ T   HSEK+A+AFGL+SL   +P+R++KNLRVC DCH   K  
Sbjct: 830 QGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFT 889

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           S+V  REI++RD  RFHHF  G CSC  +W
Sbjct: 890 SEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 135/252 (53%), Gaps = 2/252 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+     +I   +K G +D AR++ + +  +D ++W +M+AGY Q    +EAL  F  
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKD 436

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ+  +  + + + S +SAC  + A+ QG+  H  +  +     V++  ALV++Y++CG 
Sbjct: 437 MQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGR 496

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             +A   F  ++ ++  TW  ++ G A +G  E++LE+F  M QAGV+ N  TFVS +  
Sbjct: 497 SKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISA 556

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
              +  +++G++   ++ +  G     E    L+ LYG+ G +++A     +M  + H  
Sbjct: 557 SANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHV- 614

Query: 260 AWGALLNACRMY 271
           +W  ++ +C  +
Sbjct: 615 SWNTIITSCSQH 626



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 3/235 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           + V   A+I+   + G + LA ++F EMP  D + +N +++ +AQCG    AL +F  M+
Sbjct: 177 ETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMR 236

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +     + V++ S+L+AC  +G L++G+  H Y+ +  +     +  +L+D+Y KCG + 
Sbjct: 237 LSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIV 296

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A++ F      NV  W  ++          KS +LF  M  AGVRPNE T+  +LR C 
Sbjct: 297 EALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT 356

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
             G +  G + H  S++   G E  +   G L+D+Y + G LD+A  ++  +  K
Sbjct: 357 YAGEINLGEQIHLLSIKT--GFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK 409



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 1/228 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D +    +I   AK G V  AR++F+++  RD ++W AML+GYA+ G   EA+ L+H M 
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMH 135

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V      + SVLSACT     +QGR  H  + +        +G AL+ +Y + G+++
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLS 195

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M   +  T+ ++I   A  G GE +LE+F  M+ +G  P+ VT  S+L  C 
Sbjct: 196 LAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +G + +G++   S   + G+ P     G L+DLY + G + EAL++ 
Sbjct: 256 SIGDLNKGKQ-LHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 1/236 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            PD + + +++    KCG +  A ++F      + + WN ML  Y Q     ++  LF  
Sbjct: 276 SPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQ 335

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+ NE +   +L  CT+ G ++ G   H+   +   +  + +   L+DMYSK G 
Sbjct: 336 MVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGW 395

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++KA      ++ ++V +WTS+I G   +   +++LE F  M+  G+ P+ +   S +  
Sbjct: 396 LDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISA 455

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           C  +  + +G++   S     G    +  +  LV+LY R GR  EA  +   +  K
Sbjct: 456 CAGIKAMRQGQQ-IHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHK 510


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/458 (41%), Positives = 283/458 (61%), Gaps = 1/458 (0%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG   + Q V + +   D V  TA++   AK   ++ A  +F+ + +RD  AW  ++AG
Sbjct: 308 DLGKQVHAQIVKNSLDGNDFV-GTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 366

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ G+  +A+  F  MQ   VK NE ++ S LS C+ +  LD GR  H    +      
Sbjct: 367 YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 426

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           + + +ALVDMY+KCG +  A   F G+  R+  +W ++I G + +G G K+L+ F  M  
Sbjct: 427 MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD 486

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            G  P+EVTF+ VL  C  +GL+EEG++HF+S+ + YGI P +EHY C+VD+ GRAG+  
Sbjct: 487 EGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFH 546

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           E    I +M +  +   W  +L AC+M+ N E GE A+ KL ELE +    Y+LLSN++A
Sbjct: 547 EVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFA 606

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
               WD V NVR +M  +GVKK PGCS +EV+ +VH F + D +HP+  EI + L ++ +
Sbjct: 607 AKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQ 666

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           +L   GY  NT+ V++++ + EK++ L  HSE++A+AF L+S      IRI KNLR+C D
Sbjct: 667 KLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGD 726

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CHD  K IS++ N+E++VRD N FHHFK G CSC+ +W
Sbjct: 727 CHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 3/234 (1%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q +  GI+ PD     ++++  AKCG  + A K+F E+PERD ++W A++ G+   G   
Sbjct: 216 QVIKSGIN-PDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG- 273

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
             L +F+ M       N  + +S+L +C+ L  +D G+  H  I +N L     +GTALV
Sbjct: 274 SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALV 333

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           DMY+K   +  A   F  + +R+++ WT ++ G A +G GEK+++ F  M++ GV+PNE 
Sbjct: 334 DMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEF 393

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           T  S L GC  +  ++ GR+   SM  + G    +     LVD+Y + G +++A
Sbjct: 394 TLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 446



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 8/270 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D++   A ++   K   V+   + F  M   +  + N +L+G+       +   +   
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           + +   + N  + +S+L  C   G L++G+  H  + ++ +     L  +LV++Y+KCG+
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGS 241

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            N A   F  + ER+V +WT++I G    G G   L +F+ M   G  PN  TF+S+LR 
Sbjct: 242 ANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRS 300

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  V+ G++ H   ++       ++     LVD+Y +   L++A  + N++ +K   
Sbjct: 301 CSSLSDVDLGKQVHAQIVKNSLDGNDFVG--TALVDMYAKNRFLEDAETIFNRL-IKRDL 357

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELE 288
            AW  ++     Y     GE A +  ++++
Sbjct: 358 FAWTVIVAG---YAQDGQGEKAVKCFIQMQ 384



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 2/247 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD    +++++   KC  +  AR++ +EMP +D   WN  L+        +EA+ LF+LM
Sbjct: 22  PDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLM 81

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   ++LN+    S++SA   LG    G   H  + +   +  + +  A V MY K  ++
Sbjct: 82  RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSV 141

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
                FF  M   N+ +  +++ G       ++   +   +   G  PN  TF+S+L+ C
Sbjct: 142 ENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTC 201

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G + EG+     + +  GI P    +  LV++Y + G  + A  V  ++P +    +
Sbjct: 202 ASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD-VVS 259

Query: 261 WGALLNA 267
           W AL+  
Sbjct: 260 WTALITG 266


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/418 (44%), Positives = 269/418 (64%), Gaps = 3/418 (0%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           + MF +M ++  ++WN M+  Y +     EA+ L+  M+    + + VS+ SVL AC   
Sbjct: 264 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDT 323

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
            AL  G+  H YIER +L   + L  AL+DMY+KCG +++A D F  MK R+V +WT++I
Sbjct: 324 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMI 383

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222
                +G G  ++ LFS M+ +G+ P+ + FV+ L  C   GL+EEGR  F  M   Y I
Sbjct: 384 SAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKI 443

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282
            P LEH  C+VDL GRAG++ EA   I +MPM+P+   WGALL ACR++ NT++G LA+ 
Sbjct: 444 TPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAAD 503

Query: 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF 342
           KL +L  +  G YVLLSNIYA++  W+ V N+R IMK+KG+KK PG S +EV+R +H F 
Sbjct: 504 KLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFL 563

Query: 343 AGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFG 402
            GD +HP+  EI   L  + +++K  GYV ++   ++D+EEE+KE  L  HSEK+AI F 
Sbjct: 564 VGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFA 623

Query: 403 LISLKE---GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSC 457
           L++ +E      IRI KNLR+C DCH   K+IS++ +REII+RD NRFH F+ G CSC
Sbjct: 624 LMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 13/302 (4%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++ A A   DV  ARK+FDE+PER+ I  N M+  Y   G  RE + +F  M    VK +
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
             +   VL AC+  G +  G+  H    +  L  T+ +G  LV MY KCG +++A     
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R+V +W S++ G A N   + +LE+   M+   +  +  T  S+L    V     E
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA--VSNTTTE 258

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALL 265
              +   M  + G +  L  +  ++ +Y +     EA+++ + M     +P A +  ++L
Sbjct: 259 NVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVL 317

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSN----IYAESKNWDRVINVRQIMKAK 321
            AC    +T    L  +    +E K     +LL N    +YA+    DR  +V + MK++
Sbjct: 318 PAC---GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSR 374

Query: 322 GV 323
            V
Sbjct: 375 DV 376



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 4/147 (2%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P+++ + A+I   AKCG +D AR +F+ M  RD ++W AM++ Y   G+  +A+ LF  M
Sbjct: 343 PNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKM 402

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSKCG 138
           Q   +  + ++ V+ L+AC+H G L++GR +   +  +  K+T  L     +VD+  + G
Sbjct: 403 QDSGLVPDSIAFVTTLAACSHAGLLEEGR-SCFKLMTDHYKITPRLEHLACMVDLLGRAG 461

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            + +A  F   M  E N   W +++G 
Sbjct: 462 KVKEAYKFIQEMPMEPNERVWGALLGA 488



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 5/200 (2%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q  K   ++    L Q +  K     +  VL     L  L   R  H  I    L+   +
Sbjct: 20  QTRKVTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTL---RTVHSRIISEDLRYNSS 76

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LG  L+  Y+   ++  A   F  + ERNV     +I     NG   + +++F  M    
Sbjct: 77  LGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCH 136

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           V+P+  TF  VL+ C   G +  G++   S  +  G+   L     LV +YG+ G L EA
Sbjct: 137 VKPDHYTFPCVLKACSCSGNIVIGKKIHGSATK-VGLSSTLFVGNGLVSMYGKCGFLSEA 195

Query: 246 LDVINKMPMKPHAGAWGALL 265
             V+++M  +    +W +L+
Sbjct: 196 RLVLDEMSRR-DVVSWNSLV 214


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 278/442 (62%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D    T+++S    CG    AR +FD M +++ ++WNAM++GY+Q G   E+L LF  
Sbjct: 483 ETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRK 542

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
                ++ +E+++VSV  AC+ L AL  G+ AH Y+ +        +G +++DMY+K G 
Sbjct: 543 SLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGC 602

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + ++   F G+K++NV +W ++I    ++G G++++EL+  MK+ G  P+  T++ +L  
Sbjct: 603 IKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMA 662

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVEEG ++F  M+    IEP LEHY CL+D+  RAGRLD+AL ++N+MP +    
Sbjct: 663 CGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNR 722

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +LL +CR +   E+GE  ++KL+ELE      YVLLSN+YA    WD V  VRQ+MK
Sbjct: 723 IWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMK 782

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G++K  GCS IEV   V+ F  GD   P+  EI V+   +  R+   GY  NT+ V++
Sbjct: 783 EIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLH 842

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           ++ EEEK D L  HSEK+AI+FGL+   +G  +RI KNLR+C DCH+  K+ISK   REI
Sbjct: 843 EVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREI 902

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD  RFHHF++G CSC  YW
Sbjct: 903 VVRDNKRFHHFRDGLCSCCDYW 924



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 4/246 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V    A I A AKCG ++ A K+F  + ++   +WNA++ G+AQ G  R+ALHL   M  
Sbjct: 385 VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTY 444

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
              + +  ++ S+L AC HL +L  G+  H Y+ RN L+    +GT+L+  Y  CG  + 
Sbjct: 445 SGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASS 504

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  MK++N+ +W ++I G + NG   +SL LF      G++ +E+  VSV   C  
Sbjct: 505 ARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQ 564

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           +  +  G+E    + +    E      GC ++D+Y ++G + E+  V + +  K +  +W
Sbjct: 565 LSALRLGKEAHGYVLKALQTEDAF--VGCSIIDMYAKSGCIKESRKVFDGLKDK-NVASW 621

Query: 262 GALLNA 267
            A++ A
Sbjct: 622 NAIIVA 627



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 8/248 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A++    KCG VD A K+FD MPE + ++WN+M+  +++ G SR++  L   M 
Sbjct: 180 DVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEML 239

Query: 82  IHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
             +  L +V ++V++L  C   G +D G   H    +  L   V +  A+V MYSKCG +
Sbjct: 240 GEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYL 299

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPNEVTFVSVLR 198
           N+A   F     +NV +W ++I   ++ G   ++  L   M+  G  ++ NEVT ++VL 
Sbjct: 300 NEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLP 359

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C     +   +E H  S R  +     +E     +  Y + G L+ A  V + +  K  
Sbjct: 360 ACLDKLQLRSLKELHGYSFRHCF---QHVELSNAFILAYAKCGALNSAEKVFHGIGDKT- 415

Query: 258 AGAWGALL 265
             +W AL+
Sbjct: 416 VSSWNALI 423



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 4/235 (1%)

Query: 14  VFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           V D  H   D V  T +I   A CG    +R +FD M  ++ I WNA+++GY + G   +
Sbjct: 69  VSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGD 128

Query: 73  ALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
            + +F  L+   D + +  +  SV+ AC  +  +  G   H  + +  L + V +G ALV
Sbjct: 129 VVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALV 188

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNE 190
            MY KCG +++AM  F  M E N+ +W S+I   + NG    S +L   ++ + G+ P+ 
Sbjct: 189 GMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDV 248

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           VT V++L  C   G V+ G      +  + G+   +     +V +Y + G L+EA
Sbjct: 249 VTVVTILPVCAGEGEVDIGM-GIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA 302



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V   +   D     ++I   AK G +  +RK+FD + +++  +WNA++  +   G  +EA
Sbjct: 578 VLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEA 637

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVD 132
           + L+  M+      +  + + +L AC H G +++G ++       N ++  +     L+D
Sbjct: 638 IELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLID 697

Query: 133 MYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGA---GEK 173
           M ++ G ++ A+     M +E +   W+S++      GA   GEK
Sbjct: 698 MLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEK 742


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/471 (41%), Positives = 291/471 (61%), Gaps = 12/471 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +++F+ + E  VV  T ++    K   ++  R++F EMPER+ +AW  M
Sbjct: 155 MYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVM 214

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY   G +RE L L   M       LN V++ S+LSAC   G L  GRW HVY  +  
Sbjct: 215 VAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKE 274

Query: 120 LKM-------TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
           + M        V +GTALVDMY+KCGN++ +M+ F  M++RNV TW ++  GLAM+G G 
Sbjct: 275 MMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGR 334

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
             +++F  M +  V+P+++TF +VL  C   G+V+EG   F S+R  YG+EP ++HY C+
Sbjct: 335 MVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRF-YGLEPKVDHYACM 392

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292
           VDL GRAG ++EA  ++ +MP+ P+    G+LL +C ++   E+ E   R+L+++   N 
Sbjct: 393 VDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNT 452

Query: 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN 352
              +L+SN+Y      D    +R  ++ +G++K+PG S I V+  VH F +GD +HPR  
Sbjct: 453 EYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTK 512

Query: 353 EIEVMLGEISRRLKLAGYVANTNPVMYDIEE--EEKEDTLCKHSEKVAIAFGLISLKEGV 410
           EI + L E+  R++ AGYV + + ++   E   EEKE  LC HSEK+A+ FGL+  K   
Sbjct: 513 EIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPST 572

Query: 411 PIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           P+ + KNLR+C DCH   K++SKV++REII+RDRNRFH FK G CSC  YW
Sbjct: 573 PLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 41/296 (13%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFH 78
           P      A+    A  G++  A+K+FDE+P  E+D + W  +L+ +++ G    ++ LF 
Sbjct: 41  PRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFV 100

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V++++VS+V +   C  L  L   +  H    +  +  +V +  AL+DMY KCG
Sbjct: 101 EMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCG 160

Query: 139 -------------------------------NMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
                                           + +  + F  M ERN   WT ++ G   
Sbjct: 161 LVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLG 220

Query: 168 NGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRRE--YGIE 223
            G   + LEL + M  + G   N VT  S+L  C   G +  GR  H  ++++E   G E
Sbjct: 221 AGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEE 280

Query: 224 PWLEHY---GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
              +       LVD+Y + G +D +++V   M  K +   W AL +   M+    M
Sbjct: 281 ASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM-RKRNVVTWNALFSGLAMHGKGRM 335


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 278/442 (62%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+    A+I   AKCG V  A ++FD++  RD + WN+MLA YAQ G   E++ L   
Sbjct: 180 ERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCRE 239

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M  + V+  E ++V+V+S+   +  L  GR  H +  R+  +    + TAL+DMY+KCG+
Sbjct: 240 MAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGS 299

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A+  F  ++E+ V +W ++I G AM+G    +L+LF  M++   RP+ +TFV VL  
Sbjct: 300 VKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAA 358

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C    L++EGR  ++ M R+YGI P ++HY C++DL G  G+LDEA D+I  M +KP +G
Sbjct: 359 CSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSG 418

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALLN+C+++ N E+ ELA  KL+ELE  + G YV+L+N+YA+S  W+ V  +RQ+M 
Sbjct: 419 VWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMI 478

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            K +KK   CS IEV  +V+ F AGD +H   + I   L  +   +  AGY  +T  V +
Sbjct: 479 DKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFH 538

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EE+EK   +C HSE++AIAFGLIS   G  + I KNLR+C DCH   K ISK+  REI
Sbjct: 539 DVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREI 598

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            VRD NR+H FK G CSC  +W
Sbjct: 599 TVRDVNRYHSFKHGMCSCGDHW 620



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 2/230 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           AR +FD++P+++   WN ++ GYA  G    A+ L+H M  + ++ +  ++  VL AC+ 
Sbjct: 101 ARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSA 160

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L A+ +GR  H Y+ ++  +  + +G AL+DMY+KCG +  A   F  +  R+   W S+
Sbjct: 161 LSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSM 220

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           +   A NG  ++S+ L   M   GVRP E T V+V+     V  +  GRE        +G
Sbjct: 221 LAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGRE-IHGFGWRHG 279

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            +   +    L+D+Y + G +  AL +  ++  K    +W A++    M+
Sbjct: 280 FQSNDKVKTALIDMYAKCGSVKVALALFERLREK-RVVSWNAIITGYAMH 328



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
            S+L +C    AL+ G+  H       +     L T LV +Y+   ++  A + F  + +
Sbjct: 51  TSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPK 110

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           +N++ W  +I G A NG  + ++ L+  M   G+RP+  T   VL+ C  +  + EGR  
Sbjct: 111 QNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSI 170

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            + + +  G E  L     L+D+Y + G + +A  V +K+ ++  A  W ++L A
Sbjct: 171 HEYVIKS-GWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRD-AVLWNSMLAA 223


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/436 (41%), Positives = 278/436 (63%), Gaps = 1/436 (0%)

Query: 26   QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
            Q A+I   AKCG V  A KMF+++ E+  + WN+M+ G++Q G S EA+ LF  M ++ V
Sbjct: 638  QNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV 697

Query: 86   KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            K+++++ +SV+ AC+HLG L++G+W H  +    L+    L TAL DMYSKCG +  A  
Sbjct: 698  KMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHG 757

Query: 146  FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
             F  M ER++ +W+ +I G  M+G    ++ LF+ M  +G++PN++TF+ +L  C   G 
Sbjct: 758  VFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGA 817

Query: 206  VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            VEEG+ +F+SM  E+G+EP  +H+ C+VDL  RAG L+ A  +I  +P   ++  WGALL
Sbjct: 818  VEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALL 876

Query: 266  NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            N CR++K  ++ +   + L++++T + G Y LLSNIYAE   WD+   VR +MK+KG++K
Sbjct: 877  NGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRK 936

Query: 326  LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            +PG S IE+D++++ F  GD +H +  +I   L      +    Y +  +  +    +  
Sbjct: 937  VPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFN 996

Query: 386  KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
            KE+ +  HSEK+AIAFG+I+ + G  +RI KNLRVC DCH   K+ SK+  REII+RD N
Sbjct: 997  KENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLN 1056

Query: 446  RFHHFKEGKCSCKGYW 461
            RFH F+ G CSC  YW
Sbjct: 1057 RFHCFRNGSCSCNDYW 1072



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 25/277 (9%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA++G     ++VFD   +PD      +I      G  + A  ++ EM  +D    +  +
Sbjct: 390 YAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFV 449

Query: 62  --------AGYAQC------GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL-- 105
                   +G+         G++ E L +F  M    V+ + V+M+SV  AC+ LG+L  
Sbjct: 450 FPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRL 509

Query: 106 ------DQGRWAHVYIERNRLKMTVT-LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
                  +GR  H ++ R  +   +  LG AL+++Y+  GN+      F  +KE+ + +W
Sbjct: 510 GRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSW 569

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
            ++I     NG  E++L LF  M+  G+ P+  +  S L  C  +   + G +    + +
Sbjct: 570 NTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIK 629

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
                 ++++   L+D+Y + G +  A  +  K+  K
Sbjct: 630 TGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIKEK 664



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 1/144 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    TA+    +KCG++ +A  +FD M ER  ++W+ M+AGY   G+    + LF+ M 
Sbjct: 735 DSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML 794

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K N+++ + +LSAC+H GA+++G+     +    ++        +VD+ S+ G++N
Sbjct: 795 GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLN 854

Query: 142 KAMDFFWGMK-ERNVYTWTSVIGG 164
            A      +    N   W +++ G
Sbjct: 855 GAYQIITSLPFPANSSIWGALLNG 878


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/452 (40%), Positives = 288/452 (63%), Gaps = 5/452 (1%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           +KV +  +E D+V    +++   KC   ++ AR++F+ M  RD I WN ++  Y Q G++
Sbjct: 288 RKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQA 347

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           ++AL +F  MQ+ +V  NE+++ +VLSAC  LGA  QG+  H  I   R K  V L  +L
Sbjct: 348 KDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSL 407

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           ++MY++CG+++  +  F  ++++++ +W+++I   A +G     LE F  + Q G+  ++
Sbjct: 408 MNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADD 467

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VT VS L  C   G+++EG + F SM  ++G+ P   H+ C+VDL  RAGRL+ A ++I+
Sbjct: 468 VTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIH 527

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN-HGAYVLLSNIYAESKNWD 309
            MP  P A AW +LL+ C+++ +T+     + KL ELE+++ H    LLSN+YAE+  WD
Sbjct: 528 DMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD 587

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
              +VR+    +  +K PGCS IE++  VHEF AGD++HP    I   +  +S+++K AG
Sbjct: 588 ---DVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAG 644

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +   V+++++EEEKE  LC HSEK+AIA+GLIS   G P+ IVKNLR C DCH   K
Sbjct: 645 YVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAK 704

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            IS++  R+I+VRD  RFHHF+ G CSCK YW
Sbjct: 705 FISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 144/261 (55%), Gaps = 5/261 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +  D + Q A+I+  +KCG ++ ARK+FD +  RD IAWN M++GYA+ G + +AL LF 
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQ 253

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC- 137
            M  +D K N V+ + +L+ACT+L  L+QGR  H  +  +  +  + +G  L++MY+KC 
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCS 313

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
            ++ +A   F  M+ R+V TW  +I      G  + +L++F  M+   V PNE+T  +VL
Sbjct: 314 SSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVL 373

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C V+G   +G+  H          +  LE+   L+++Y R G LD+ + V   +  K 
Sbjct: 374 SACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSLDDTVGVFAAIRDKS 431

Query: 257 HAGAWGALLNACRMYKNTEMG 277
              +W  L+ A   + ++  G
Sbjct: 432 LV-SWSTLIAAYAQHGHSRTG 451



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 137/256 (53%), Gaps = 6/256 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D++  TA+I+  A+C D++LARK FDEM ++  + WNA++AGY++ G  R AL ++  
Sbjct: 91  EFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQD 150

Query: 80  M---QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           M       +K + ++  S L ACT +G + QGR        +       +  AL++MYSK
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSK 210

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A   F  +K R+V  W ++I G A  GA  ++LELF  M     +PN VTF+ +
Sbjct: 211 CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGL 270

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR-AGRLDEALDVINKMPMK 255
           L  C  +  +E+GR     + RE G E  L     L+++Y + +  L+EA  V  +M  +
Sbjct: 271 LTACTNLEDLEQGRAIHRKV-REDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329

Query: 256 PHAGAWGALLNACRMY 271
                W  L+ A   Y
Sbjct: 330 D-VITWNILIVAYVQY 344



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 123/237 (51%), Gaps = 8/237 (3%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
           KCG V  A  +F  +   + ++W  ++A +A+ G  REAL  +  M +  ++ +    V 
Sbjct: 4   KCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVV 63

Query: 95  VLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            +  C+    L QG+  H  I   RL +  + LGTAL+ MY++C ++  A   F  M ++
Sbjct: 64  AIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKK 123

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLM---KQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            + TW ++I G + NG    +L+++  M      G++P+ +TF S L  C VVG + +GR
Sbjct: 124 TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGR 183

Query: 211 E-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E    ++   Y  +  +++   L+++Y + G L+ A  V +++  +    AW  +++
Sbjct: 184 EIEARTVASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLKNRD-VIAWNTMIS 237



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 48/234 (20%)

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG++  A+  F  ++  N  +WT ++   A NG   ++L  +  M   G+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 193 FV------------------------------SVLRGCCVVGL------VEEGREHFDSM 216
           FV                               ++ G  ++ +      +E  R+ FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEAL----DVINKMP--MKPHAGAWGALLNACRM 270
            ++      L  +  L+  Y R G    AL    D+++K P  MKP A  + + L AC +
Sbjct: 121 GKKT-----LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTV 175

Query: 271 YKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
             +   G E+ +R +      +      L N+Y++  + +    V   +K + V
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/456 (43%), Positives = 285/456 (62%), Gaps = 6/456 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  G    D   Q A+++  +KCGD++ AR++FD MPE+  +AWN++++G+ Q G 
Sbjct: 130 HCHAVVSGF-GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGL 188

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + EA+ +F+ M+    + +  + VS+LSAC   GA+  G W H YI    L + V LGTA
Sbjct: 189 ADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTA 248

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRP 188
           L+++YS+CG++ KA + F  MKE NV  WT++I     +G G++++ELF+ M+   G  P
Sbjct: 249 LINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIP 308

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           N VTFV+VL  C   GLVEEGR  +  M + Y + P +EH+ C+VD+ GRAG LDEA   
Sbjct: 309 NNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKF 368

Query: 249 INKMPMKPHAGA---WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
           I+++     A A   W A+L AC+M++N ++G   +++L+ LE  N G +V+LSNIYA S
Sbjct: 369 IHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALS 428

Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
              D V ++R  M    ++K  G SVIEV+ + + F  GDE+H    EI   L  +  R 
Sbjct: 429 GKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRC 488

Query: 366 KLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
           K  GY   +  VM+ +EEEEKE  L  HSEK+A+AFGL+   + V I IVKNLR+C DCH
Sbjct: 489 KEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCH 547

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              K IS V NR+I VRD+ RFHHF+ G CSC  YW
Sbjct: 548 SAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I+       +     +F  +P  D   +N+++   ++       +  +  M   +V 
Sbjct: 45  TKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVS 104

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +  SV+ +C  L AL  G+  H +   +   +   +  ALV  YSKCG+M  A   
Sbjct: 105 PSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQV 164

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M E+++  W S++ G   NG  ++++++F  M+++G  P+  TFVS+L  C   G V
Sbjct: 165 FDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAV 224

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G      +  E G++  ++    L++LY R G + +A +V +KM  + +  AW A+++
Sbjct: 225 SLGSWVHQYIISE-GLDLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMIS 282

Query: 267 A 267
           A
Sbjct: 283 A 283


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 281/444 (63%), Gaps = 2/444 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +  VV  TA+++   KCG ++ A + F ++ E++ +AW+A+ A YA+  ++R+A+ + H 
Sbjct: 209 QSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHR 268

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH--VYIERNRLKMTVTLGTALVDMYSKC 137
           M +  +  N  + VSVL AC  + AL QGR  H  +++    L+  V + TALV+MYSKC
Sbjct: 269 MDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKC 328

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           GN+  A + F  +   ++  W S+I   A +G  EK+LELF  M+  G++P  +TF SVL
Sbjct: 329 GNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVL 388

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   G++++GR+HF S   ++GI P  EH+GC+VDL GRAG + ++ D++  MP +PH
Sbjct: 389 FACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPH 448

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
             AW A L ACR Y+N +    A+  L +L+ +    YVLLSN+YA++  W  V  +RQ 
Sbjct: 449 PVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQA 508

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M+     K  G S IEV   VHEF +GD  HPR  EI   L  +++ +K AGYV +T  V
Sbjct: 509 MQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMV 568

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++D+++E KE  +  HSEK+A+AF L++  EG PIR+VKNLRVC DCH  +K ISK+ NR
Sbjct: 569 LHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNR 628

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EI+VRD NRFH F+ G CSC  YW
Sbjct: 629 EIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 2/237 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           GI E  +V QTA++S   K G    A  +F  M  RD +AW+AM+A YA+ G  REAL L
Sbjct: 106 GIEEESIV-QTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGL 164

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M +  V  N+V++VS L AC  LG L  G   H  +E   ++  V +GTALV++Y K
Sbjct: 165 FRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGK 224

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A + F  + E+NV  W+++    A N     ++ +   M   G+ PN  TFVSV
Sbjct: 225 CGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSV 284

Query: 197 LRGCCVVGLVEEGREHFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           L  C  +  +++GR   + +     G+E  +     LV++Y + G L  A ++ +K+
Sbjct: 285 LDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKI 341



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 123/269 (45%), Gaps = 3/269 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I    KC   D A  +F  +  ++  +W  MLA +A+          F  M +  +   
Sbjct: 16  LIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPG 75

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           EV +   LSACT    +  GR   + I    ++    + TALV +Y K G+   A   F 
Sbjct: 76  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFL 135

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R+V  W++++   A NG   ++L LF  M   GV PN+VT VS L  C  +G +  
Sbjct: 136 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 195

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA- 267
           G      +  + GI+  +     LV+LYG+ GR++ A +   ++ ++ +  AW A+  A 
Sbjct: 196 GALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNVVAWSAISAAY 253

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYV 296
            R  +N +   +  R  +E    N   +V
Sbjct: 254 ARNDRNRDAIRVLHRMDLEGLAPNSTTFV 282



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 6/173 (3%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V  G  E DV   TA+++  +KCG++ LA  MFD++   D + WN+++A  AQ G++ +A
Sbjct: 306 VLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKA 365

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV-YIERNRLKMTVTLGTALVD 132
           L LF  M++  ++   ++  SVL AC+H G LDQGR   V +I  + +         +VD
Sbjct: 366 LELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVD 425

Query: 133 MYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGL----AMNGAGEKSLELFSL 180
           +  + G +  + D    M  E +   W + +G       M+GA   +  LF L
Sbjct: 426 LLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQL 478


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/429 (44%), Positives = 271/429 (63%), Gaps = 5/429 (1%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
           +V   + MF +M ++  ++WN M+  Y +     EA+ L+  M+    + + VS+ SVL 
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
           AC    AL  G+  H YIER +L   + L  AL+DMY+KCG + KA D F  MK R+V +
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS 377

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
           WT++I     +G G  ++ LFS ++ +G+ P+ + FV+ L  C   GL+EEGR  F  M 
Sbjct: 378 WTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMT 437

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
             Y I P LEH  C+VDL GRAG++ EA   I  M M+P+   WGALL ACR++ +T++G
Sbjct: 438 DHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIG 497

Query: 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDRE 337
            LA+ KL +L  +  G YVLLSNIYA++  W+ V N+R IMK+KG+KK PG S +EV+R 
Sbjct: 498 LLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRI 557

Query: 338 VHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKV 397
           +H F  GD +HP+ +EI   L  + +++K  GYV ++   ++D+EEE+KE  L  HSEK+
Sbjct: 558 IHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKL 617

Query: 398 AIAFGLISLKE-----GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
           AI F L++ KE        IRI KNLR+C DCH   K+IS++ +REII+RD NRFH F+ 
Sbjct: 618 AIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRF 677

Query: 453 GKCSCKGYW 461
           G CSC  YW
Sbjct: 678 GVCSCGDYW 686



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 147/313 (46%), Gaps = 17/313 (5%)

Query: 22  DVVCQTAM----ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           D+ C +++    + A A   DV  ARK+FDE+PER+ I  N M+  Y   G   E + +F
Sbjct: 69  DLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF 128

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M   +V+ +  +   VL AC+  G +  GR  H    +  L  T+ +G  LV MY KC
Sbjct: 129 GTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKC 188

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +++A      M  R+V +W S++ G A N   + +LE+   M+   +  +  T  S+L
Sbjct: 189 GFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 248

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---M 254
               V     E   +   M  + G +  L  +  ++ +Y +     EA+++ ++M     
Sbjct: 249 PA--VSNTTTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN----IYAESKNWDR 310
           +P A +  ++L AC    +T    L  +    +E K     +LL N    +YA+    ++
Sbjct: 306 EPDAVSITSVLPAC---GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362

Query: 311 VINVRQIMKAKGV 323
             +V + MK++ V
Sbjct: 363 ARDVFENMKSRDV 375



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 2/157 (1%)

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           R  H  I    L+   +LG  L+  Y+   ++  A   F  + ERNV     +I     N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G   + +++F  M    VRP+  TF  VL+ C   G +  GR+   S  +  G+   L  
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK-VGLSSTLFV 177

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              LV +YG+ G L EA  V+++M  +    +W +L+
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/471 (41%), Positives = 277/471 (58%), Gaps = 15/471 (3%)

Query: 1   MYAELGCLGYCQKVFD--------------GIHEPDVVCQTAMISACAKCGDVDLARKMF 46
           MY  +  LG C  +FD               + + + VC TA+I   AKC  ++ A   F
Sbjct: 516 MYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMYAKCMYLEDADVAF 574

Query: 47  DEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD 106
           + +  RD   W  ++  YAQ  +  +AL+ F  MQ   VK NE ++   LS C+ L +L+
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
            G+  H  + ++     + +G+ALVDMY+KCG M +A   F  +  R+   W ++I G A
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG G K+L  F +M   G+ P+ VTF  +L  C   GLVEEG+EHF+SM R++GI P +
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           +H  C+VD+ GR G+ DE  D I KM +  +A  W  +L A +M+ N  +GE A+ KL E
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE 346
           L+ +   +Y+LLSNI+A    WD V  VR +M +KGVKK PGCS +E + +VH F + D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 347 THPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISL 406
           +HP+  EI + L E+ R L    YV  T  V++++ E EK++ L  HSE++A+ F LIS 
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 407 KEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSC 457
                IRI KNLR+C DCHDV K IS + N+EI+VRD  RFHHFK G CSC
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 5/253 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   +A++   AKCG+++LA KMF  MPE++ + WN +L GYAQ G     L LF  M 
Sbjct: 247 DLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMM 306

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             DVK NE ++ +VL  C +   L QG+  H  I +   +    +G  LVDMYSKCG   
Sbjct: 307 ELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI 366

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  +K+ ++  W+++I  L   G  E+S++LF LM+     PN+ T  S+L    
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G ++ G+    +   +YG E  +     LV +Y + G + +   +   M +     +W
Sbjct: 427 NTGNLQYGQS-IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISW 484

Query: 262 GALLNA---CRMY 271
            A L+    C MY
Sbjct: 485 NAYLSGLHDCGMY 497



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 2/246 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    A+++   K G V    K+++ M +RD I+WNA L+G   CG     L +F+ 
Sbjct: 447 ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYH 506

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M       N  + +S+L +C+ L  +  GR  H +I +N+L     + TAL+DMY+KC  
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  +  R+++TWT +I   A    GEK+L  F  M+Q GV+PNE T    L G
Sbjct: 567 LEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSG 626

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  +E G++   SM  + G    +     LVD+Y + G ++EA + + +  ++    
Sbjct: 627 CSSLASLEGGQQ-LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA-EALFEALIRRDTI 684

Query: 260 AWGALL 265
           AW  ++
Sbjct: 685 AWNTII 690



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 4/247 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD     ++++  AKC     AR +  +MP+RD ++W A++ G    G + ++++LF  M
Sbjct: 145 PDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM 204

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q   +  NE ++ + L AC+   ALD G+  H    +  L + + +G+ALVD+Y+KCG +
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI 264

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F GM E+N  TW  ++ G A  G     L+LF  M +  V+ NE T  +VL+GC
Sbjct: 265 ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGC 324

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMKPHAG 259
                +++G+    S+  + G E   E  GC LVD+Y + G   +A+ V  K   KP   
Sbjct: 325 ANSKNLKQGQV-IHSLIIKCGYEGN-EFIGCGLVDMYSKCGLAIDAIGVF-KTIKKPDIV 381

Query: 260 AWGALLN 266
            W AL+ 
Sbjct: 382 VWSALIT 388



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 7/254 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            ++   +KCG    A  +F  + + D + W+A++    Q G+S E++ LFHLM++ D   
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N+ ++ S+LSA T+ G L  G+  H  + +   +  V +  ALV MY K G ++     +
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M +R++ +W + + GL   G  ++ L +F  M + G  PN  TF+S+L  C  +  V 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            GR+ H   ++ +     ++     L+D+Y +   L++A    N++ ++     W  ++ 
Sbjct: 534 YGRQVHAHIIKNQLDDNNFV--CTALIDMYAKCMYLEDADVAFNRLSVRD-LFTWTVIIT 590

Query: 267 ACRMYKNTEMGELA 280
               Y  T  GE A
Sbjct: 591 N---YAQTNQGEKA 601


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/441 (42%), Positives = 278/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A++   AKCG +  A  +F EM  +D I+WN ++ GY++   + EAL LF+L+ 
Sbjct: 431 DIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLL 490

Query: 82  IHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +      +E ++  VL AC  L A D+GR  H YI RN       +  +LVDMY+KCG +
Sbjct: 491 VEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  +  +++ +WT +I G  M+G G++++ LF+ M+QAG+ P+E++FVS+L  C
Sbjct: 551 LLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYAC 610

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV+EG   F+ MR E  IEP +EHY C+VD+  R G L +A   I  MP+ P A  
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATI 670

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL  CR++ + ++ E  + K+ ELE +N G YVL++NIYAE++ W+ V  +R+ +  
Sbjct: 671 WGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQ 730

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G++K PGCS IE+   V+ F AGD ++P   +IE  L  +  R+   GY   T   + D
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALID 790

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            EE EKE+ LC HSEK+A+A G+IS   G  IR+ KNLRVC DCH++ K +SK+  REI+
Sbjct: 791 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 850

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NRFH FK+G CSC+G+W
Sbjct: 851 LRDSNRFHQFKDGHCSCRGFW 871



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG   +C  V       D  C T ++   +KCGD+D A+ +F EM  R  +++ +M+AGY
Sbjct: 314 LGRAVHCFGVKACFSREDRFCNT-LLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGY 372

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
           A+ G + EA+ LF  M+   +  +  ++ +VL+ C     LD+G+  H +I+ N +   +
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDI 432

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQ 183
            +  AL+DMY+KCG+M +A   F  M+ +++ +W +VIGG + N    ++L LF+ L+ +
Sbjct: 433 FVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVE 492

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
               P+E T   VL  C  +   ++GRE H   MR  Y  +  + +   LVD+Y + G L
Sbjct: 493 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGAL 550



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
             CGD+  A ++FD++     + WN ++   A+ G    ++ LF  M    V+++  +  
Sbjct: 140 TNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFS 199

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            V  + + L +++ G   H YI ++      ++G +LV  Y K   ++ A   F  M ER
Sbjct: 200 CVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTER 259

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           +V +W S+I G   NG  EK L +F  M  +G+  +  T VSV  GC    L+  GR  H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVH 319

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
              ++  +  E        L+D+Y + G LD A  V  +M 
Sbjct: 320 CFGVKACFSRED--RFCNTLLDMYSKCGDLDSAKVVFREMS 358



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 6/218 (2%)

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           +R     N  L  + + G  + A+ L H+    D+  +  ++ SVL  C    +L  G+ 
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDI--DPRTLCSVLQLCADSKSLKDGKE 115

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
              +I  N   +   LG+ L  MY+ CG++ +A   F  +K      W  ++  LA +G 
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
              S+ LF  M  +GV  +  TF  V +    +  V  G + H   ++  +G    + + 
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN- 234

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             LV  Y +  R+D A  V ++M  +    +W +++N 
Sbjct: 235 -SLVAFYLKNHRVDSARKVFDEMTERD-VISWNSIING 270


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/465 (41%), Positives = 297/465 (63%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMF----DEMPERDPIA 56
           MY + G +    K+FD     +     A I+  ++ G VD A +MF    ++  E + ++
Sbjct: 296 MYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVS 355

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           W +++AG AQ GK  EAL LF  MQ+  VK N V++ S+L AC ++ AL  GR  H +  
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAV 415

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R  L   V +G+AL+DMY+KCG +  +   F  M  +N+  W S++ G +M+G  ++ + 
Sbjct: 416 RVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMS 475

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           +F  + +  ++P+ ++F S+L  C  VGL +EG ++F+ M  EYGI+P LEHY C+V+L 
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLL 535

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GRAG+L EA D+I ++P +P +  WGALLN+CR+  N ++ E+A++KL  LE +N G YV
Sbjct: 536 GRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYV 595

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
           L+SNIYA    W  V ++R  M++ G+KK PGCS I+V  +V+   A D++HP+ ++I  
Sbjct: 596 LMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITE 655

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            + EIS  ++ +G+  N +  + D+EE+E+E  L  HSEK+A+ FGL++  +G P++++K
Sbjct: 656 KMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIK 715

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH V K IS    REI +RD NRFHHFK+G CSC  +W
Sbjct: 716 NLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 152/311 (48%), Gaps = 43/311 (13%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIA 56
           MY   G +G  +KVFD + E DVV  +A++   A+ G ++   ++  EM     E + ++
Sbjct: 160 MYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVS 219

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN +L+G+ + G  +EA+ +F  M       ++V++ SVL +      L+ GR  H Y+ 
Sbjct: 220 WNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVI 279

Query: 117 RNRLKMTVTLGTALVDMYSKCGN-------------------------------MNKAMD 145
           +  L     + +A++DMY K G+                               ++KA++
Sbjct: 280 KQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALE 339

Query: 146 FFWGMKER----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            F   KE+    NV +WTS+I G A NG   ++LELF  M+ AGV+PN VT  S+L  C 
Sbjct: 340 MFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACG 399

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  +  GR       R + ++    H G  L+D+Y + GR+  +  V N MP K +   
Sbjct: 400 NIAALGHGRSTHGFAVRVHLLDD--VHVGSALIDMYAKCGRIKMSQIVFNMMPTK-NLVC 456

Query: 261 WGALLNACRMY 271
           W +L+N   M+
Sbjct: 457 WNSLMNGYSMH 467



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 3/179 (1%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
           D DL   +   +P+    ++++++    +     +++ +F  M  H +  +   + ++  
Sbjct: 68  DADL---ILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFK 124

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
            C  L A   G+  H     + L M   +  +L  MY +CG M  A   F  M E++V T
Sbjct: 125 VCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVT 184

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
            ++++ G A  G  E+ + + S M+++G+ PN V++  +L G    G  +E    F  M
Sbjct: 185 CSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKM 243



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 3/146 (2%)

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
           AH  I ++  +    +   L+  YS     N A      + +  VY+++S+I  L     
Sbjct: 37  AHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKL 96

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
             +S+ +FS M   G+ P+     ++ + C  +   + G++ H  +      ++ +++  
Sbjct: 97  FSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ-- 154

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMK 255
           G L  +Y R GR+ +A  V ++M  K
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEK 180


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 288/442 (65%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +V    A++   AKCG+++ + K+F    E++ +AWN ++ GY Q G   +AL+LF  
Sbjct: 339 DSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSN 398

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M   D++  EV+  SVL A   L AL+ GR  H    +        +  +L+DMY+KCG 
Sbjct: 399 MLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGR 458

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  M +++  +W ++I G +++G G ++L LF +M+Q+  +PN++TFV VL  
Sbjct: 459 IDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSA 518

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+++GR HF SM ++YGIEP +EHY C+V L GR+G+ DEA+ +I ++P +P   
Sbjct: 519 CSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVM 578

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W ALL AC ++KN ++G++ +++++E+E ++   +VLLSN+YA +K WD V  VR+ MK
Sbjct: 579 VWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMK 638

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            K VKK PG S +E    VH F  GD +HP    I  ML  + ++ + AGYV + + V+ 
Sbjct: 639 KKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLL 698

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E++EKE  L  HSE++A+AFGLI +  G  IRI+KNLR+C DCH V K++SK+  REI
Sbjct: 699 DVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREI 758

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RD NRFHHF++G CSC  YW
Sbjct: 759 VIRDINRFHHFRQGVCSCGDYW 780



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 138/249 (55%), Gaps = 5/249 (2%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D+    A++    K G++  A++ F+EMP+ D I W+ M++ YAQ  KS+EAL LF 
Sbjct: 236 YDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFC 295

Query: 79  LMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M+   V + N  +  SVL AC  L  L+ G   H  + +  L   V +  AL+D+Y+KC
Sbjct: 296 RMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKC 355

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +  ++  F G  E+N   W ++I G    G GEK+L LFS M    ++P EVT+ SVL
Sbjct: 356 GEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVL 415

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           R    +  +E GR+ H  +++  Y  +  + +   L+D+Y + GR+D+A    +KM  K 
Sbjct: 416 RASASLVALEPGRQIHSLTIKTMYNKDSVVAN--SLIDMYAKCGRIDDARLTFDKMD-KQ 472

Query: 257 HAGAWGALL 265
              +W AL+
Sbjct: 473 DEVSWNALI 481



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 3/260 (1%)

Query: 7   CLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ 66
           CL     V+   H+ D    TA+I A + CG+VD AR++FD +  +D ++W  M+A YA+
Sbjct: 123 CLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAE 182

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
                ++L LF  M+I   + N  ++ + L +C  L A   G+  H    +      + +
Sbjct: 183 NYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYV 242

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG- 185
           G AL+++Y+K G + +A  FF  M + ++  W+ +I   A +   +++LELF  M+Q+  
Sbjct: 243 GIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSV 302

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           V PN  TF SVL+ C  + L+  G +   S   + G++  +     L+D+Y + G ++ +
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361

Query: 246 LDVINKMPMKPHAGAWGALL 265
           + +      K    AW  ++
Sbjct: 362 VKLFTGSTEKNEV-AWNTII 380



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 115/233 (49%), Gaps = 3/233 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  Q  +++     G ++ A K+FDEMP  + +++  +  G+++  + + A  L   + 
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLF 96

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               ++N+    ++L     +   D     H Y+ +   +    +GTAL+D YS CGN++
Sbjct: 97  REGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVD 156

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F G+  +++ +WT ++   A N   E SL LF  M+  G RPN  T  + L+ C 
Sbjct: 157 AARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN 216

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            +   + G+  H  +++  Y  + ++     L++LY ++G + EA     +MP
Sbjct: 217 GLEAFKVGKSVHGCALKVCYDRDLYVGI--ALLELYTKSGEIAEAQQFFEEMP 267



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 88/150 (58%), Gaps = 4/150 (2%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           ++  D V   ++I   AKCG +D AR  FD+M ++D ++WNA++ GY+  G   EAL+LF
Sbjct: 438 MYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLF 497

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV--YIERNRLKMTVTLGTALVDMYS 135
            +MQ  + K N+++ V VLSAC++ G LD+GR AH    ++   ++  +   T +V +  
Sbjct: 498 DMMQQSNSKPNKLTFVGVLSACSNAGLLDKGR-AHFKSMLQDYGIEPCIEHYTCMVWLLG 556

Query: 136 KCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           + G  ++A+     +  + +V  W +++G 
Sbjct: 557 RSGQFDEAVKLIGEIPFQPSVMVWRALLGA 586


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/473 (42%), Positives = 286/473 (60%), Gaps = 36/473 (7%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY------------------- 64
           VC +A++S  AKC  V  AR +FD MP RD ++WN +L  Y                   
Sbjct: 216 VC-SALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 274

Query: 65  ----------------AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
                            + G+S EA+ +F  MQ    K NE+++ S+L AC+    L  G
Sbjct: 275 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMG 334

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           +  H Y+ R+     +T  TAL+ MY+KCG++N + + F  M+ ++V  W ++I   AM+
Sbjct: 335 KEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMH 394

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G G+++L LF  M  + V+PN VTF  VL GC    LVEEG + F+SM R++ +EP   H
Sbjct: 395 GNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANH 454

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
           Y C+VD+Y RAGRL+EA   I  MPM+P A AWGALL ACR+YKN E+ +++++KL E+E
Sbjct: 455 YSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIE 514

Query: 289 TKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETH 348
             N G YV L NI   +K W     VR +MK +G+ K PGCS ++V  +VH F  GD+++
Sbjct: 515 PNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSN 574

Query: 349 PRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKE 408
              ++I   L E+  ++K+AGY  +T+ V+ DI++EEK ++LC HSEK+A+AFG+++L  
Sbjct: 575 IESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNG 634

Query: 409 GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              IR+ KNLR+C DCH+  K +SKV    I+VRD  RFHHFK G CSCK  W
Sbjct: 635 QSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 140/303 (46%), Gaps = 34/303 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I A  KC  V+ AR++FD++  RD ++W ++ + Y +CG  R+ + +F  M 
Sbjct: 112 DVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMG 171

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              VK N +++ S+L AC  L  L  G+  H +  R+ + + + + +ALV +Y+KC ++ 
Sbjct: 172 WSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVR 231

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  M  R+V +W  V+     N   EK   LF  M + GVR +E T+ +V+ GC 
Sbjct: 232 EARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 291

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G  EE  E F  M+                                 KM  KP+    
Sbjct: 292 ENGRSEEAVEMFRKMQ---------------------------------KMGFKPNEITI 318

Query: 262 GALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
            ++L AC   +N  MG E+        +  +  +   L  +YA+  + +   NV  +M+ 
Sbjct: 319 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 378

Query: 321 KGV 323
           K V
Sbjct: 379 KDV 381



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 6/248 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I      GD + AR++FD +P+ DP   + +++     G S EA+ ++  +Q   +K +
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
               ++   AC   G   + +  H    R  +   V +G AL+  Y KC  +  A   F 
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            +  R+V +WTS+       G   K +++F  M  +GV+PN +T  S+L  C  +  ++ 
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G+E H  ++R  +G+   L     LV LY +   + EA  V + MP +    +W  +L A
Sbjct: 198 GKEIHGFAVR--HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTA 254

Query: 268 CRMYKNTE 275
              +KN E
Sbjct: 255 --YFKNKE 260



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 48/93 (51%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LG  L+ +    G+ N+A   F  + + +  T +++I  L  +G   ++++++S +++ G
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           ++P+   F++  + C V G     +E  D   R
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATR 106


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/436 (41%), Positives = 278/436 (63%), Gaps = 1/436 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           Q A+I   AKCG V  A KMF+++ E+  + WN+M+ G++Q G S EA+ LF  M ++ V
Sbjct: 441 QNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV 500

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           K+++++ +SV+ AC+HLG L++G+W H  +    L+    L TAL DMYSKCG +  A  
Sbjct: 501 KMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHG 560

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M ER++ +W+ +I G  M+G    ++ LF+ M  +G++PN++TF+ +L  C   G 
Sbjct: 561 VFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGA 620

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           VEEG+ +F+SM  E+G+EP  +H+ C+VDL  RAG L+ A  +I  +P   ++  WGALL
Sbjct: 621 VEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALL 679

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           N CR++K  ++ +   + L++++T + G Y LLSNIYAE   WD+   VR +MK+KG++K
Sbjct: 680 NGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRK 739

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
           +PG S IE+D++++ F  GD +H +  +I   L      +    Y +  +  +    +  
Sbjct: 740 VPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFN 799

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           KE+ +  HSEK+AIAFG+I+ + G  +RI KNLRVC DCH   K+ SK+  REII+RD N
Sbjct: 800 KENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLN 859

Query: 446 RFHHFKEGKCSCKGYW 461
           RFH F+ G CSC  YW
Sbjct: 860 RFHCFRNGSCSCNDYW 875



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 144/273 (52%), Gaps = 8/273 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D V +T+++    +   +D A K FD MP RD +AW++++  + Q G++ E L +F  
Sbjct: 132 ESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQ 191

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+ + V+M+SV  AC+ LG+L  GR  H Y+ R  ++   +L  +L+ MY K G+
Sbjct: 192 MISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGD 251

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  +  R    WT +I     +G  +++L +F+ M++  + PN+VT V VL  
Sbjct: 252 LYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCA 311

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPH 257
           C  +G V+EGR  H   +RR   ++P L+  G  L++LY   G L +   V   +  K  
Sbjct: 312 CARLGRVKEGRSVHGFVIRR--AMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTI 369

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETK 290
             +W  L++   ++      E A    V+++T+
Sbjct: 370 L-SWNTLIS---IFTRNGQPEEALLLFVQMQTQ 398



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 125/247 (50%), Gaps = 4/247 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +     ++I    K GD+  A ++F+ +P R    W  M++ Y Q G  +EAL++F  
Sbjct: 233 ESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAK 292

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-LGTALVDMYSKCG 138
           MQ   ++ N+V+MV VL AC  LG + +GR  H ++ R  +   +  LG AL+++Y+  G
Sbjct: 293 MQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTG 352

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+      F  +KE+ + +W ++I     NG  E++L LF  M+  G+ P+  +  S L 
Sbjct: 353 NLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLS 412

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +   + G +    + +      ++++   L+D+Y + G +  A  +  K+  K   
Sbjct: 413 ACGTISFSQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIKEKSLV 470

Query: 259 GAWGALL 265
             W +++
Sbjct: 471 -TWNSMI 476



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 43/343 (12%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H P     T +I + A+ G  + ++++FD  P+ D   W  ++  Y   G   EA+ L+H
Sbjct: 32  HPP---ASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYH 88

Query: 79  LMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M   D  +++     SVL AC+  G L  G   H  + +   +    + T+L+ MY + 
Sbjct: 89  EMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEM 148

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
             ++ A   F  M  R+V  W+S++     NG   + L++FS M    V P+ VT +SV 
Sbjct: 149 SCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVT 208

Query: 198 RGCCVVGLVEEGRE-HFDSMRRE---------------------YGIEPWLEHYGC---- 231
             C  +G +  GR  H   +RRE                     Y  E   E+  C    
Sbjct: 209 EACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTA 268

Query: 232 ----LVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC----RMYKNTEMGELA 280
               ++  Y ++G   EAL+V  KM    M+P+      +L AC    R+ +   +    
Sbjct: 269 PWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFV 328

Query: 281 SRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
            R+ ++ E    G  ++   +YA++ N      V + +K K +
Sbjct: 329 IRRAMDPELDFLGPALM--ELYADTGNLRDCHKVFETIKEKTI 369



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 1/144 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    TA+    +KCG++ +A  +FD M ER  ++W+ M+AGY   G+    + LF+ M 
Sbjct: 538 DSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML 597

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K N+++ + +LSAC+H GA+++G+     +    ++        +VD+ S+ G++N
Sbjct: 598 GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLN 657

Query: 142 KAMDFFWGMK-ERNVYTWTSVIGG 164
            A      +    N   W +++ G
Sbjct: 658 GAYQIITSLPFPANSSIWGALLNG 681


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/462 (41%), Positives = 292/462 (63%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+     Y + VFD I E   +  TAMIS  A+ G    A ++F E P ++  AW A+
Sbjct: 155 MYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTAL 214

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G  Q G + +AL+LF  M+   V + + + + SV+ AC +    + G+  H  +    
Sbjct: 215 ISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLG 274

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  + +  ALVDMY+KC ++  A   F  M+ ++V +WTS+I G A +G  E++L L+ 
Sbjct: 275 YESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYD 334

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AGV+PNEVTFV ++  C  VGLV +GR  F SM  ++GI P L+HY CL+DL+ R+
Sbjct: 335 DMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRS 394

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G LDEA ++I  MP+KP    W ALL+AC+ + NT+M    +  L++L+ ++  +Y+LLS
Sbjct: 395 GHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLS 454

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA +  W+ V  VR++M  K VKK+PG S +++ RE   F AG+ + P  +EI  ++ 
Sbjct: 455 NIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMT 514

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           ++   ++  GYV +T+ V+ D++++EKE  L  HSE++A+A+GL+    G  IRIVKNLR
Sbjct: 515 KLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLR 574

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K+IS + +REI VRD  R+HHFK+GKCSC  +W
Sbjct: 575 VCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 139/365 (38%), Gaps = 73/365 (20%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            +I A  KCG +  A K+FD +P++D +AW  +L+         +A  +   +    ++ 
Sbjct: 48  TLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQP 107

Query: 88  NEVSMVSVLSACTHLGA--LDQGRWAHVYIERNRLKMTVTLGTALVDMYSK--------- 136
           +     S++ AC +LG+  +  G+  H     +       + ++LVDMY+K         
Sbjct: 108 DHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRA 167

Query: 137 ----------------------CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
                                  G   +A++ F     +N+Y WT++I GL  +G    +
Sbjct: 168 VFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDA 227

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           L LF  M++ GV   +   +S + G C    V E  +    +    G E  L     LVD
Sbjct: 228 LYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVD 287

Query: 235 LYGRA-------------------------------GRLDEALDVINKMPM---KPHAGA 260
           +Y +                                G  +EAL + + M +   KP+   
Sbjct: 288 MYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVT 347

Query: 261 WGALLNACRMYKNTEMGELASRKLVE----LETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
           +  L+ AC        G    + +VE      +  H  Y  L ++++ S + D   N+ +
Sbjct: 348 FVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQH--YTCLLDLFSRSGHLDEAENLIR 405

Query: 317 IMKAK 321
            M  K
Sbjct: 406 TMPVK 410



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 43/192 (22%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  I ++ L         L+D Y KCG +  A+  F  + +++   W +V+    ++   
Sbjct: 31  HAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLP 90

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG--------------------------- 204
            K+  +   +   G++P+   F S+++ C  +G                           
Sbjct: 91  HKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKS 150

Query: 205 ----------LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
                     L + GR  FDS+     I      +  ++  Y R+GR  EAL++  + P 
Sbjct: 151 SLVDMYAKFELPDYGRAVFDSIFELSSIS-----WTAMISGYARSGRKLEALELFRESPF 205

Query: 255 KPHAGAWGALLN 266
           K +  AW AL++
Sbjct: 206 K-NLYAWTALIS 216


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/453 (40%), Positives = 281/453 (62%), Gaps = 1/453 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q V   + E D V   A++    + G  D   K+F+EMP+R+ ++WN ++AG+A  G+
Sbjct: 198 HAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGR 257

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             E L  F +MQ   +  + +++ ++L  C  + AL  G+  H  I ++R    V L  +
Sbjct: 258 VFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNS 317

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+DMY+KCG +      F  M  +++ +W +++ G ++NG   ++L LF  M + G+ PN
Sbjct: 318 LMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPN 377

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            +TFV++L GC   GL  EG+  F ++ +++G++P LEHY CLVD+ GR+G+ DEAL V 
Sbjct: 378 GITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVA 437

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
             +PM+P    WG+LLN+CR+Y N  + E+ + +L E+E  N G YV+LSNIYA +  W+
Sbjct: 438 ENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWE 497

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN-EIEVMLGEISRRLKLA 368
            V  VR++M   G+KK  GCS I++  ++H F AG  +  R + E + +  E+S  +K  
Sbjct: 498 DVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNL 557

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GYV NT  V++DI EE K   +C+HSE++A  F LI+   G+PIRI KNLRVC DCH   
Sbjct: 558 GYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWM 617

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K +SKV  R I++RD NRFHHF+ G CSCK YW
Sbjct: 618 KAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 26  QTAMISACAKCGDVDLARKMF---DEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +T +I+  + CG V+ AR++F   DE P  +P+ W AM  GY++ G S EAL L+  M  
Sbjct: 110 KTKLITLYSVCGRVNEARRVFQIDDEKPPEEPV-WVAMAIGYSRNGFSHEALLLYRDMLS 168

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTALVDMYSKCGNMN 141
             VK    +    L AC+ L     GR  H  I ++ + +    +  AL+ +Y + G  +
Sbjct: 169 CCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFD 228

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           + +  F  M +RNV +W ++I G A  G   ++L  F +M++ G+  + +T  ++L  C 
Sbjct: 229 EVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCA 288

Query: 202 VVGLVEEGRE-HFDSMR-REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
            V  +  G+E H   ++ R+    P L     L+D+Y + G +     V ++M  K    
Sbjct: 289 QVTALHSGKEIHGQILKSRKNADVPLLNS---LMDMYAKCGEIGYCEKVFDRMHSK-DLT 344

Query: 260 AWGALL 265
           +W  +L
Sbjct: 345 SWNTML 350



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 9/216 (4%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVLSACTHLGALDQGRWAHVY 114
           +N+ L    + G   +AL L    +   ++  E   S+   L AC    +L+ GR  H++
Sbjct: 36  FNSTLKSLCKWGNLDKALRLIESSKPTPIEEEEEEESISLFLHACISRRSLEHGRKLHLH 95

Query: 115 IER--NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV--YTWTSVIGGLAMNGA 170
           + R  NR+    TL T L+ +YS CG +N+A   F    E+      W ++  G + NG 
Sbjct: 96  LLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGF 155

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
             ++L L+  M    V+P    F   L+ C  +     GR  H   ++ + G    + + 
Sbjct: 156 SHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVN- 214

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             L+ LY   G  DE L V  +MP + +  +W  L+
Sbjct: 215 NALLGLYVEIGCFDEVLKVFEEMPQR-NVVSWNTLI 249



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM----PERDPIA 56
           MYA+ G +GYC+KVFD +H  D+     M++  +  G +  A  +FDEM     E + I 
Sbjct: 321 MYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGIT 380

Query: 57  WNAMLAGYAQCGKSREALHLF-HLMQIHDVK 86
           + A+L+G +  G + E   LF ++MQ   V+
Sbjct: 381 FVALLSGCSHSGLTSEGKRLFSNVMQDFGVQ 411


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/441 (41%), Positives = 284/441 (64%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++ +  +I    +CG+V  A  +F+ + ++D + W +M+  +A+ G   EA+ LF  M 
Sbjct: 499 DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKML 558

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ + V++V +L A   L +L +G+  H ++ R +  +   + ++LVDMYS CG+MN
Sbjct: 559 NAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMN 618

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F   K ++V  WT++I    M+G G++++ +F  M + GV P+ V+F+++L  C 
Sbjct: 619 YALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              LV+EG+ + D M  +Y ++PW EHY C+VDL GR+G+ +EA   I  MP++P +  W
Sbjct: 679 HSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVW 738

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL ACR++KN E+  +A+ KL+ELE  N G YVL+SN++AE   W+ V  +R  M  +
Sbjct: 739 CALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQ 798

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG-YVANTNPVMYD 380
           G++K P CS IE+   VH F A D +H     I + L EI+ +L+  G YV +T+ V++D
Sbjct: 799 GLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHD 858

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           + EEEK D L +HSE++AI+FGLIS   G P+RI KNLRVC DCH+ TK++SK+F REI+
Sbjct: 859 VSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIV 918

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFHHF  G CSC  +W
Sbjct: 919 VRDANRFHHFSGGTCSCGDFW 939



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+     ++    KC  V+ + ++FD M  +D ++W  ++A YAQ  +  EA+  F  
Sbjct: 397 DSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRT 456

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            Q   +K++ + M S+L AC+ L ++   +  H Y  RN L + + L   ++D+Y +CG 
Sbjct: 457 AQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGE 515

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A++ F  + ++++ TWTS++   A NG   +++ LF  M  AG++P+ V  V +L  
Sbjct: 516 VCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGA 575

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +  + +G+E H   +R ++ +E  +     LVD+Y   G ++ AL V ++   K   
Sbjct: 576 IAGLSSLTKGKEIHGFLIRGKFPVEGAV--VSSLVDMYSGCGSMNYALKVFDEAKCKDVV 633

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKNWD 309
             W A++NA  M+ + +      ++++E   + +H +++ L    + SK  D
Sbjct: 634 -LWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVD 684



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 121/248 (48%), Gaps = 14/248 (5%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ----I 82
           T ++    KCG +  A ++FD MP R   +WNA++      G + EA+ ++  M+    +
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPV 156

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
                +  ++ SVL AC   G    G   H    ++ L  +  +  ALV MY+KCG ++ 
Sbjct: 157 AGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDS 216

Query: 143 AMDFF-WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           A+  F W    R+V +W S I G   NG   ++L+LF  M+  G   N  T V VL+ C 
Sbjct: 217 ALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCA 276

Query: 202 VVGLVEEGREHFDSMRR---EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            +  +  GRE   ++ +   E+ I+        L+ +Y R G +D AL V  ++  K + 
Sbjct: 277 ELAQLNHGRELHAALLKCGTEFNIQ-----CNALLVMYARCGWVDSALRVFREIGDKDYI 331

Query: 259 GAWGALLN 266
            +W ++L+
Sbjct: 332 -SWNSMLS 338



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 137/326 (42%), Gaps = 49/326 (15%)

Query: 28  AMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           A++   AKCG +D A ++F+ M + RD  +WN+ ++G  Q G   EAL LF  MQ     
Sbjct: 203 ALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFS 262

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           +N  + V VL  C  L  L+ GR  H  + +   +  +     LV MY++CG ++ A+  
Sbjct: 263 MNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV-MYARCGWVDSALRV 321

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + +++  +W S++     N    ++++ F  M Q G  P+    VS+L     +G +
Sbjct: 322 FREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRL 381

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             GRE                     V  Y    RLD  L + N +              
Sbjct: 382 INGRE---------------------VHAYAVKQRLDSDLQIANTL-------------- 406

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
              MY      E ++R    +  K+H ++  +   YA+S  +   I   +  + +G+K  
Sbjct: 407 -MDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVD 465

Query: 327 P-----------GCSVIEVDREVHEF 341
           P           G   I + ++VH +
Sbjct: 466 PMMMGSILEACSGLKSISLLKQVHSY 491



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 127/247 (51%), Gaps = 4/247 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++ C  A++   A+CG VD A ++F E+ ++D I+WN+ML+ Y Q     EA+  F  
Sbjct: 297 EFNIQCN-ALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGE 355

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M  +    +   +VS+LSA  HLG L  GR  H Y  + RL   + +   L+DMY KC +
Sbjct: 356 MVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYS 415

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  +   F  M+ ++  +WT++I   A +    +++  F   ++ G++ + +   S+L  
Sbjct: 416 VECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEA 475

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  +   ++      R   ++  L++   ++D+YG  G +  AL++  +M  K    
Sbjct: 476 CSGLKSISLLKQVHSYAIRNGLLDLILKNR--IIDIYGECGEVCYALNIF-EMLDKKDIV 532

Query: 260 AWGALLN 266
            W +++N
Sbjct: 533 TWTSMVN 539



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 5/147 (3%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-- 183
           L T L+ MY KCG +  A   F GM  R V++W ++IG    +G   +++ ++  M+   
Sbjct: 95  LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154

Query: 184 --AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
             AG  P+  T  SVL+ C   G    G E    +  + G++        LV +Y + G 
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEGDGRCGSE-VHGLAVKSGLDRSTLVANALVGMYAKCGL 213

Query: 242 LDEALDVINKMPMKPHAGAWGALLNAC 268
           LD AL V   M       +W + ++ C
Sbjct: 214 LDSALRVFEWMRDGRDVASWNSAISGC 240


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/461 (40%), Positives = 280/461 (60%), Gaps = 1/461 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +   + Y ++VF+ +   D V   + I+A  +   ++ AR +FD M  RD ++W  +
Sbjct: 462 MYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTI 521

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ YAQ  +  EA+  F  M     K N   +  +LS C  LG+   G+  H    ++ +
Sbjct: 522 ISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGM 581

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+ MY KCG  + +   F  M+ER+++TW + I G A +G G ++++++  
Sbjct: 582 DSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEH 640

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  GV PNEVTFV +L  C   GLV+EG + F SM R+YG+ P LEHY C+VDL GR G
Sbjct: 641 MESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTG 700

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            +  A   I  MP++P    W ALL AC+++KN E+G  A+ KL   E  N G YV+LSN
Sbjct: 701 DVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSN 760

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IY+    W  V  +R+IMK +GV K PGCS +++  +VH F  GD+ H +  EI+  L +
Sbjct: 761 IYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQD 820

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   L+  GYV +T  V++DI+EE+KE +L  HSEK+A+A+GL+   +G+PI+I+KNLR+
Sbjct: 821 LYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRI 880

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K +S V  R+I +RD NRFHHF+ G CSC  +W
Sbjct: 881 CGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 4/218 (1%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           A  G +   + +F+ I +P VV   AMI+   + G VD A+++FD MP R+ I+W  M+A
Sbjct: 332 ARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIA 391

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           GYAQ G+S EAL L   +  + +  +  S+ S   AC+H+GAL+ GR  H    +   + 
Sbjct: 392 GYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQF 451

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
              +  AL+ MY KC NM      F  M+ ++  +W S I  L  N   E +  +F  M 
Sbjct: 452 NSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNML 511

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
              V    V++ +++         +E  E F +M  E+
Sbjct: 512 SRDV----VSWTTIISAYAQAERGDEAVEFFKTMLHEH 545



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 42/296 (14%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA LG +   ++VFDG+ E + V   AM+S   + GD+ +AR++FD MP RD  +WN+M+
Sbjct: 105 YARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMV 164

Query: 62  AGYAQCGKSREALHLF-------------------------------HLMQIHDVKLNEV 90
            GY    +  +A +LF                                +M       ++ 
Sbjct: 165 TGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQS 224

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK-CGNMNKAMDFFWG 149
           +  SVLSA T L  L         + +   +  V +GT+++++Y++    ++ A+ FF G
Sbjct: 225 NFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDG 284

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M ERN YTW+++I  L+  G  + ++ ++       + P++   ++ L  C   G + E 
Sbjct: 285 MVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC---GRITEA 340

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           R  F+ +      +P +  +  ++  Y + G +DEA ++ ++MP + +  +W  ++
Sbjct: 341 RILFEQIP-----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR-NTISWAGMI 390



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 111/268 (41%), Gaps = 44/268 (16%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G L   + +FD I   +V   T ++S  A+ G V  AR++FD MPER+ +AWNAM+
Sbjct: 74  YCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMV 133

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + Y Q G    A  LF  M   D                                     
Sbjct: 134 SCYVQNGDITMARRLFDAMPSRD------------------------------------- 156

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             VT   ++V  Y     M  A + F  M +RN+ TWT +I G        K  ++F +M
Sbjct: 157 --VTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM 214

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGR-A 239
              G  P++  F SVL    V GL + G  E    +  + G E  +     ++++Y R A
Sbjct: 215 HHEGASPDQSNFASVL--SAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDA 272

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNA 267
             LD A+   + M ++ +   W  ++ A
Sbjct: 273 SALDIAIKFFDGM-VERNEYTWSTMIAA 299



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 144/302 (47%), Gaps = 18/302 (5%)

Query: 20  EPDVVCQTAMISACAK-CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           E DVV  T++++   +    +D+A K FD M ER+   W+ M+A  +  G+   A+ ++ 
Sbjct: 255 ESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYG 314

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
              +  +     S  ++L+     G + + R   +  E+    + V+   A++  Y + G
Sbjct: 315 RDPVKSIP----SQTALLTGLARCGRITEAR---ILFEQIPDPIVVSW-NAMITGYMQNG 366

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +++A + F  M  RN  +W  +I G A NG  E++L+L   + + G+ P+  +  S   
Sbjct: 367 MVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFL 426

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKP 256
            C  +G +E GR+   S+  + G +     Y C  L+ +YG+   ++    V N+M +K 
Sbjct: 427 ACSHIGALETGRQ-VHSLAVKAGCQ--FNSYVCNALISMYGKCRNMEYVRQVFNRMRVKD 483

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
              +W + + A  + +N  M E A      + +++  ++  + + YA+++  D  +   +
Sbjct: 484 TV-SWNSFIAA--LVQNN-MLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFK 539

Query: 317 IM 318
            M
Sbjct: 540 TM 541



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 10/176 (5%)

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           M   L    HL A     WA + +      +  +  +A +   ++ G + +A + F  M 
Sbjct: 1   MARYLQLRRHLSAAAAATWAPLPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMP 60

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
            R++  W S+I     +G  E +  LF  +    VR    T   +L G   +G V + R 
Sbjct: 61  HRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TATILLSGYARLGRVLDARR 116

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            FD M     +      +  +V  Y + G +  A  + + MP +    +W +++  
Sbjct: 117 VFDGMPERNTVA-----WNAMVSCYVQNGDITMARRLFDAMPSRD-VTSWNSMVTG 166


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/440 (43%), Positives = 281/440 (63%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   ++++   AKCG++  AR +FDEMPER+ ++W+ M+ GYAQ     EAL LF    
Sbjct: 160 DVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQAL 219

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           I DV +N+ +  SV+  C+    L+ G+  H    +     +  +G+AL+ +YSKCG + 
Sbjct: 220 IEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIE 279

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  RN+  W S++   A +   ++   LF  M   G++PN ++F+SVL  C 
Sbjct: 280 GAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACS 339

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVE+GRE+F S+ R+YGIEP  EHY  LVDL GRAG+L EA+ VI +MPM+P    W
Sbjct: 340 HAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVW 398

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL  CR++K+TEM    + +++E+++ + G +VLLSN YA +  ++    +R++++ +
Sbjct: 399 GALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDR 458

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK  G S +E   +VH F AGD +H ++ EI   L E+   ++ AGYVA+T+ V+  +
Sbjct: 459 GVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAV 518

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           + EEK +T+  HSE++AIAFGLI+   G PIR++KNLRVC DCH   K +SK   R +IV
Sbjct: 519 DGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIV 578

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F++GKCSC  YW
Sbjct: 579 RDNNRFHRFEDGKCSCGDYW 598



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 4/233 (1%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
           ++FDE P++    W+++++ +AQ      AL  F  M    V+ ++    S   AC  L 
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
             D G+  H    +      V +G++LVDMY+KCG +  A   F  M ERNV +W+ +I 
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIY 200

Query: 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGI 222
           G A    G ++L LF       V  N+ TF SV+R C     +E G+  H   ++  +  
Sbjct: 201 GYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDS 260

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
             ++     L+ LY + G ++ A  V +++P + + G W ++L AC  + +T+
Sbjct: 261 SSFVG--SALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIACAQHAHTQ 310



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 3/200 (1%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N   + ++L + T   +L QG   H +I +  L+    +   L+++YSK      ++  F
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
               +++  TW+SVI   A N A   +L+ F  M   GVRP++  + S  + C  +   +
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            G+  H  +++  Y  + ++     LVD+Y + G + +A  + ++MP +      G +  
Sbjct: 144 VGKSVHCLAVKTGYYCDVFVG--SSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYG 201

Query: 267 ACRMYKNTEMGELASRKLVE 286
             ++    E   L  + L+E
Sbjct: 202 YAQLDDGVEALTLFKQALIE 221


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/422 (45%), Positives = 275/422 (65%), Gaps = 5/422 (1%)

Query: 1   MYAELGCLGYCQKVFDGI---HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           MYA+ G  G+ ++VFD +     P      A+I    K G VD+AR +FD+M  RD I +
Sbjct: 222 MYAKCGDFGHAREVFDAVGRGRRPQ--SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITF 279

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+ GY   G+ REAL LF  M+ HD++++  ++VS+LSAC  LGAL QGR  H  IE 
Sbjct: 280 NSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIEL 339

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             ++  + +GTAL+DMY KCG +N+A   F  M +R+V+ WT++I GLA NG G+  LE 
Sbjct: 340 RLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEY 399

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M+  G +PN V++++VL  C    L+ EGR +FD MR  Y I P +EHYGC++DL G
Sbjct: 400 FYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLG 459

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G LDEA+D++  MPM+P++  W ++L+ACR++K  ++ + A+  L+++E      YV 
Sbjct: 460 RSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQ 519

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L NI  +S+ W+    +R +M+ + VKK  G S + V  +VH+F   D++HPR  EI  M
Sbjct: 520 LYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAM 579

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L EIS RLK AGY   T+ V  D++EEEKE TL  HSEK+AIAFGL+SL   +P+ I+KN
Sbjct: 580 LEEISHRLKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKN 639

Query: 418 LR 419
           LR
Sbjct: 640 LR 641



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 164/311 (52%), Gaps = 3/311 (0%)

Query: 26   QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
            QT +I    KC   D +  +F+E+P       N+++     C     AL + H M +  V
Sbjct: 974  QTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGV 1033

Query: 86   KLNEVSMVSVLSACTHLGA--LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
              ++V+  + + A +   +  L   +  H  + +   +M + + ++L+  Y+  G ++ +
Sbjct: 1034 TPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSS 1093

Query: 144  MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
               F G+ + NV  +T++I   A  G G +++ELF  M  +G++P+ VTF+  + GC   
Sbjct: 1094 HLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQA 1153

Query: 204  GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            G+ EEGR   + MR    ++P   H+ C+V+L  R G + EA++++ + P++ +  AW +
Sbjct: 1154 GMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSS 1213

Query: 264  LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
            LL +C+ +    +G+ A+  L+++  K+    + +SN + +  + +  + ++++   K V
Sbjct: 1214 LLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEV 1273

Query: 324  KKLPGCSVIEV 334
            KK  G S+IEV
Sbjct: 1274 KK-SGHSLIEV 1283



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 147/297 (49%), Gaps = 34/297 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY ELG  G  ++ FD I   D V  T +IS  AK G +  AR +  + P RD I+W ++
Sbjct: 90  MYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSL 149

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A Y++  +++EA+  F  M    +  ++V+++ VLSAC+ L  L+ G   H+ ++   +
Sbjct: 150 IAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGM 209

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
            M+  L  AL+DMY+KCG+   A + F           W                     
Sbjct: 210 SMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFD 269

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M+ R++ T+ S+I G   +G   ++L LF  M++  +R +  T VS+L  C  +G + +
Sbjct: 270 QMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQ 329

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           GR     +     +E  +     L+D+Y + GR++EA  V  +M  K    AW A++
Sbjct: 330 GRALHACIELRL-VETDIYIGTALLDMYMKCGRVNEATIVFQRMG-KRDVHAWTAMI 384



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 5/255 (1%)

Query: 22   DVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            ++    +++   +  GD VD  + + D + E D I+WN++L+ YA  G  +EA++    M
Sbjct: 868  NIFLSNSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQM 926

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK-MTVTLGTALVDMYSKCGN 139
              H    +  S VS+L+     G    G   H  + +      +V + T L+DMY KC  
Sbjct: 927  LWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCC 986

Query: 140  MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             + ++  F  +    +    S+I         + +LE+   M   GV P++VTF + ++ 
Sbjct: 987  FDHSLAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKA 1046

Query: 200  CCVVGLVE-EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +         +   S   + G E  +     L+  Y  AG+L  +  +   + + P+ 
Sbjct: 1047 ISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGL-LDPNV 1105

Query: 259  GAWGALLNACRMYKN 273
              + A+++AC  Y +
Sbjct: 1106 ICFTAIISACARYGD 1120



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 4/215 (1%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A  +F E+P ++    N +L G      + E +  F  M+   ++LN +S    +  C  
Sbjct: 785 ALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQ 844

Query: 102 LGA-LDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
            G  L+QGR  H V ++   +   + L  +LVD+YS  G+    +     +   +V +W 
Sbjct: 845 NGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWN 904

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           S++   A  G  ++++     M   G  P+  +FVS+L      G  + G +    +  +
Sbjct: 905 SILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQ-IHGIVHK 963

Query: 220 YGIEPWLEHY-GCLVDLYGRAGRLDEALDVINKMP 253
            G      H    L+D+YG+    D +L + N++P
Sbjct: 964 LGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 998



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 2    YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
            YA  G L     +F+G+ +P+V+C TA+ISACA+ GD   A ++FD+M       D + +
Sbjct: 1084 YACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTF 1143

Query: 58   NAMLAGYAQCGKSREALHLFHLMQ 81
               +AG  Q G   E   +  LM+
Sbjct: 1144 LCAIAGCDQAGMFEEGRLVIELMR 1167



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T ++   +K G ++ A         R+V +WTS+I   +     +++++ F  M   G+ 
Sbjct: 116 TMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIA 175

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P++VT + VL  C  +  +E G      + +E G+         L+D+Y + G    A +
Sbjct: 176 PDDVTVIGVLSACSQLKDLELGCS-LHLLVKEKGMSMSENLVVALIDMYAKCGDFGHARE 234

Query: 248 VINKMPMKPHAGAWGALLN 266
           V + +       +W A+++
Sbjct: 235 VFDAVGRGRRPQSWNAIID 253


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/453 (40%), Positives = 286/453 (63%), Gaps = 9/453 (1%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           GY   VF G    D+ C         KC  V  A  +F  M  ++ ++W AML GY Q G
Sbjct: 300 GYNHNVFVGSALVDMYC---------KCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNG 350

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            S EA+ +F  MQ + ++ ++ ++ SV+S+C +L +L++G   H     + L   +T+  
Sbjct: 351 FSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSN 410

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL+ +Y KCG++  +   F  M  R+  +WT+++ G A  G   ++++LF  M   G++P
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKP 470

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           + VTF++VL  C   GLVE G+++F+SM +++GI P+ +HY C++DL+GRAGRL+EA + 
Sbjct: 471 DAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNF 530

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           INKMP  P +  W  LL++CR+Y N E+G+ A+  L+EL+ +N   Y+LLS+IYA    W
Sbjct: 531 INKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKW 590

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
             V  +R+ M+ KG +K PG S I+   +V+ F A D++ P  ++I   L +++ ++   
Sbjct: 591 SNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEE 650

Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
           GYV + + V++D+E+ EK   L  HSEK+AIAFGL+ +  G+PIR+VKNLRVC DCH+ T
Sbjct: 651 GYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNAT 710

Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K ISK+  REI+VRD  RFH FK+G CSC  +W
Sbjct: 711 KYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 157/287 (54%), Gaps = 3/287 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA++G +    +VFD + E +VV    MI+   + G V  ++++F  M ERD I+W  M
Sbjct: 182 MYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTM 241

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G  Q G   EA+ LF  M+   + +++ +  SVL+AC  L AL +G+  H  I R+  
Sbjct: 242 ITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGY 301

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V +G+ALVDMY KC ++  A   F  M  +NV +WT+++ G   NG  E+++ +F  
Sbjct: 302 NHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCD 361

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ G+ P++ T  SV+  C  +  +EEG + F       G+  ++     L+ LYG+ G
Sbjct: 362 MQRNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCG 420

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMY-KNTEMGELASRKLVE 286
            ++++  + ++M  +    +W AL++    + K  E  +L  R LV+
Sbjct: 421 SIEDSNQLFDEMSFRDEV-SWTALVSGYAQFGKANETIDLFERMLVQ 466



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 149/297 (50%), Gaps = 36/297 (12%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y++LG + Y + VFD + +P+      M+SA +K GD+   +++F  MP RD ++WN+++
Sbjct: 50  YSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLI 109

Query: 62  AGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +GY   G   EA+  ++ M    V  LN ++  ++L   +  G +D GR  H  I +   
Sbjct: 110 SGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGF 169

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMD-------------------------------FFWG 149
              V +G++LVDMY+K G ++ A                                  F G
Sbjct: 170 GAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHG 229

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           MKER+  +WT++I GL  NG   ++++LF  M+Q G+  ++ TF SVL  C  +  ++EG
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEG 289

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +E H   +R  Y    ++     LVD+Y +   +  A  V  +M  K +  +W A+L
Sbjct: 290 KEIHTLIIRSGYNHNVFVG--SALVDMYCKCRSVRYAEAVFKRMANK-NVVSWTAML 343



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           Q +  H  I ++       L   L++ YSK GN+  A   F  M + N ++W +++   +
Sbjct: 23  QAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYS 82

Query: 167 MNGAGEKSLELFSLMKQAGVRPNE--VTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
            +G      E+FS+M      PN   V++ S++ G    G V E  + ++SM ++
Sbjct: 83  KSGDLSTMQEIFSIM------PNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKD 131


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/461 (41%), Positives = 277/461 (60%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G +   ++VF+ +   D+V   A++S     G +D A+  F+EMPER+ + W  M
Sbjct: 339 LYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVM 398

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G AQ G   E+L LF+ M+    +  + +    + AC  L AL  GR  H  + R   
Sbjct: 399 ISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGF 458

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
             +++ G AL+ MY+KCG +  A   F  M   +  +W ++I  L  +G G ++LELF L
Sbjct: 459 DSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFEL 518

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +  + P+ +TF++VL  C   GLVEEG  +F SM   YGI P  +HY  ++DL  RAG
Sbjct: 519 MLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAG 578

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +  EA D+I  MP++P    W ALL  CR++ N ++G  A+ +L EL  ++ G YVLLSN
Sbjct: 579 KFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSN 638

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA    WD V  VR++M+ KGVKK PGCS IEV+ +VH F   D  HP    +   L E
Sbjct: 639 MYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEE 698

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  +++  GY+ +T  V++D+E E+KE  L  HSEK+A+ FGL+ L  G  +R+ KNLR+
Sbjct: 699 LGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRI 758

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+  K +SKV  REI+VRD  RFHHFK G+CSC  YW
Sbjct: 759 CGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 141/295 (47%), Gaps = 37/295 (12%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           +   +K+FD + E D +  T MI+   + G++D AR+  D M E+  +AWNAM++GY   
Sbjct: 210 MAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHH 269

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI----ERNRLKMT 123
           G   EAL +F  M +  ++ +E +  SVLSAC + G    G+  H YI     R  L  +
Sbjct: 270 GFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS 329

Query: 124 VTLGTALVDMYSKCGN-------------------------------MNKAMDFFWGMKE 152
           +++  AL  +Y KCG                                +++A  FF  M E
Sbjct: 330 LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           RN+ TWT +I GLA NG GE+SL+LF+ MK  G  P +  F   +  C  +  +  GR+ 
Sbjct: 390 RNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQL 449

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              + R  G +  L     L+ +Y + G ++ A  +   MP      +W A++ A
Sbjct: 450 HAQLVR-LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSV-SWNAMIAA 502



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 160/357 (44%), Gaps = 50/357 (14%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSR 71
           +FD I +PD+V +T +I+A +  G+ +LAR++F   P   RD + +NAM+ GY+      
Sbjct: 72  LFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGF 131

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD-QGRWAHVYIERNRLKMTVTLGTAL 130
            A+ LF  +  +  + +  +  SVL A   +   + Q +  H  + ++      ++  AL
Sbjct: 132 GAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNAL 191

Query: 131 VDMYSKC----------------------------------------GNMNKAMDFFWGM 150
           + ++ KC                                        G ++ A  F  GM
Sbjct: 192 LSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGM 251

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            E+ V  W ++I G   +G   ++LE+F  M   G++ +E T+ SVL  C   G    G+
Sbjct: 252 TEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGK 311

Query: 211 E-HFDSMRREY--GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           + H   +R E    ++  L     L  LY + G++DEA  V N+MP+K    +W A+L+ 
Sbjct: 312 QVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLV-SWNAILSG 370

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
              Y N    + A     E+  +N   + ++ +  A++   +  + +   MK++G +
Sbjct: 371 ---YVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFE 424


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/439 (45%), Positives = 292/439 (66%), Gaps = 4/439 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           QT+++   +KCG +D+ARK+FD + ++  +AWNAM++GY Q G +  A+ ++  MQ+   
Sbjct: 143 QTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGE 202

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             +  + V+ LSAC   GALD GR     I   R++M V LG ALV+MY++CG +NKA +
Sbjct: 203 APDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKARE 262

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
           +F  ++ERNV TWTS+I G  M+G G ++++LF+LM+Q G  PN+VTFV+VL  C   GL
Sbjct: 263 WFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGL 322

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGAWGAL 264
           V EGR+ F SM+  YG+ P +EHY  +VD+YGRAG LD+A+  I + +P +P    W A+
Sbjct: 323 VSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAM 382

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+K+  +G   + +L+ LE ++    VLLSN+YA S   + V  VR  M  + +K
Sbjct: 383 LGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLK 442

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K  G S+IE+    H F  G+++HP+ +EI   L ++  ++   GYV  T+ V++++EEE
Sbjct: 443 KPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEE 502

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEG--VPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           E+E  L  H EK+A+AFGL+ +  G   PIRI+KNLR+C DCH   K +S V NREIIVR
Sbjct: 503 EREFALRYHGEKLAVAFGLM-MTSGCTTPIRIIKNLRICEDCHLAIKYMSAVENREIIVR 561

Query: 443 DRNRFHHFKEGKCSCKGYW 461
           D +RFHHFK GKCSC+ YW
Sbjct: 562 DMHRFHHFKAGKCSCQEYW 580



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 3/152 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +VV   A+++  A+CG V+ AR+ F+ + ER+ + W +M+AGY   G   EA+ LF+L
Sbjct: 238 EMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNL 297

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCG 138
           M+      N+V+ V+VLSAC H G + +GR A   ++    L   V    ++VDMY + G
Sbjct: 298 MRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAG 357

Query: 139 NMNKAMDFFWGM--KERNVYTWTSVIGGLAMN 168
            ++ AM F       E     WT+++G   M+
Sbjct: 358 LLDDAMRFIHDSIPGEPGPEVWTAMLGACKMH 389



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 1/210 (0%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           R +    P  D   + ++    A+ G    AL  +  +    +  +  +  SV  AC  L
Sbjct: 59  RLLAASHPAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADL 118

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
            A+  G   H +     L     + T+LV +YSKCG ++ A   F  +++++V  W ++I
Sbjct: 119 SAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMI 178

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222
            G   NG   +++E++  M+ AG  P+  TFV+ L  C   G ++ GR+  D +     +
Sbjct: 179 SGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQ-VDKLIVSERM 237

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           E  +     LV++Y R G +++A +  N +
Sbjct: 238 EMNVVLGAALVNMYARCGLVNKAREWFNML 267


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 276/443 (62%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           HE D+    A++   AKC D+D + K+F  + + + ++WN ++ G++Q G   EAL +F 
Sbjct: 395 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 454

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ   +   +V+  SVL AC    ++      H  IE++       +G +L+D Y+KCG
Sbjct: 455 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCG 514

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A+  F  + ER++ +W ++I G A++G    +LELF  M ++ V  N++TFV++L 
Sbjct: 515 YIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 574

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV  G   FDSMR ++GI+P +EHY C+V L GRAGRL++AL  I  +P  P A
Sbjct: 575 VCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSA 634

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W ALL++C ++KN  +G  ++ K++E+E ++   YVLLSN+YA + + D+V  +R+ M
Sbjct: 635 MVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSM 694

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           +  GV+K+PG S +E+  E+H F  G   HP    I  ML  ++ +    GY+ + N V+
Sbjct: 695 RNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVL 754

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+++E+K   L  HSE++A+A+GL+    G PIRI+KNLR C DCH    +ISK+  RE
Sbjct: 755 HDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKRE 814

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHF++GKCSC  YW
Sbjct: 815 IIVRDINRFHHFEDGKCSCGDYW 837



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 131/240 (54%), Gaps = 4/240 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++   AKCGD+  AR  F+ +P  D I  + M++ YAQ  ++ +A  LF  +    V  
Sbjct: 303 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 362

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           NE S+ SVL ACT++  LD G+  H +  +   +  + +G AL+D Y+KC +M+ ++  F
Sbjct: 363 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +++ N  +W +++ G + +G GE++L +F  M+ A +   +VT+ SVLR C     + 
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 208 E-GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G+ H    +  +  +  + +   L+D Y + G + +AL V   + M+    +W A+++
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIIS 539



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 112/238 (47%), Gaps = 3/238 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+   D+ C   +++   K G +  AR++FD MPER+ +++  ++  +AQ G    A  L
Sbjct: 90  GVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAAL 149

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  ++    ++N+  + ++L     + A       H    +        +G+ L+D YS 
Sbjct: 150 FRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSL 209

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C  ++ A   F G+  ++   WT+++   + N   E +  +FS M+ +G +PN     SV
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSV 269

Query: 197 LRGC-CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           L+   C+  +V     H  +++     EP +   G L+D+Y + G + +A      +P
Sbjct: 270 LKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVG--GALLDMYAKCGDIKDARLAFEMIP 325



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 3/235 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+ +    + +I A + C  V  A  +F+ +  +D + W AM++ Y++      A  +F 
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M++   K N  ++ SVL A   L ++  G+  H    +        +G AL+DMY+KCG
Sbjct: 253 KMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG 312

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  +   +V   + +I   A +   E++ ELF  + ++ V PNE +  SVL+
Sbjct: 313 DIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQ 372

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            C  +  ++ G++ H  +++   G E  L     L+D Y +   +D +L + + +
Sbjct: 373 ACTNMVQLDFGKQIHNHAIK--IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 38/197 (19%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+ G +    KVF  + E D++   A+IS                              
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIIS------------------------------ 539

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG--RWAHVYIERNR 119
            GYA  G++ +AL LF  M   +V+ N+++ V++LS C+  G ++ G   +  + I+   
Sbjct: 540 -GYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHG- 597

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELF 178
           +K ++   T +V +  + G +N A+ F   +    +   W +++    ++     +L  F
Sbjct: 598 IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH--KNVALGRF 655

Query: 179 SLMKQAGVRP-NEVTFV 194
           S  K   + P +E T+V
Sbjct: 656 SAEKILEIEPQDETTYV 672


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/464 (40%), Positives = 288/464 (62%), Gaps = 6/464 (1%)

Query: 3   AELGCLGYCQKVF-----DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           A L  +  C+++       GI+  D     +++    KC  +D A K+F+E    D +A+
Sbjct: 396 ASLQAIKVCKQIHTISIKSGIYS-DFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAY 454

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
            +M+  Y+Q G   EAL L+  MQ  D+K +     S+L+AC +L A +QG+  HV+  +
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK 514

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                 +    +LV+MY+KCG++  A   F  +  R + +W+++IGG A +G G+++L L
Sbjct: 515 FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRL 574

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F+ M + GV PN +T VSVL  C   GLV EG+++F+ M   +GI+P  EHY C++DL G
Sbjct: 575 FNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLG 634

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G+L+EA++++N +P +     WGALL A R++KN E+G+ A++ L +LE +  G +VL
Sbjct: 635 RSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVL 694

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+NIYA +  W+ V  VR+ MK   VKK PG S IE+  +V+ F  GD +H R +EI   
Sbjct: 695 LANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAK 754

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L ++   L  AGY +     ++++++ EKE  L  HSEK+A+AFGLI+   G PIR+ KN
Sbjct: 755 LDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKN 814

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR+C DCH   K + K+ +REIIVRD NRFHHFK+G CSC  YW
Sbjct: 815 LRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 2/248 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D      ++   AKCG +D +R++F  + ER+ ++WNA+ + Y Q     EA+ LF  
Sbjct: 114 ESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKE 173

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    +  NE S+  +L+AC  L   D GR  H  + +  L +      ALVDMYSK G 
Sbjct: 174 MVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGE 233

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A+  F  +   +V +W ++I G  ++   + +L L   MK +G RPN  T  S L+ 
Sbjct: 234 IEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKA 293

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +G  E GR+   S+ +           G LVD+Y +   +D+A    + MP K    
Sbjct: 294 CAAMGFKELGRQLHSSLIKMDAHSDLFAAVG-LVDMYSKCEMMDDARRAYDSMP-KKDII 351

Query: 260 AWGALLNA 267
           AW AL++ 
Sbjct: 352 AWNALISG 359



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 133/245 (54%), Gaps = 4/245 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+     ++   +KC  +D AR+ +D MP++D IAWNA+++GY+QCG   +A+ LF  M 
Sbjct: 318 DLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMF 377

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D+  N+ ++ +VL +   L A+   +  H    ++ +     +  +L+D Y KC +++
Sbjct: 378 SEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHID 437

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F      ++  +TS+I   +  G GE++L+L+  M+ A ++P+     S+L  C 
Sbjct: 438 EASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA 497

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +   E+G++ H  +++  +G    +     LV++Y + G +++A    +++P +    +
Sbjct: 498 NLSAYEQGKQLHVHAIK--FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIV-S 554

Query: 261 WGALL 265
           W A++
Sbjct: 555 WSAMI 559



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 129/256 (50%), Gaps = 2/256 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D   +  +++  +KC     ARK+ DE  E D ++W+++L+GY Q G   EAL +F+ M 
Sbjct: 15  DPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMC 74

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  VK NE +  SVL AC+    L+ GR  H        +    +   LV MY+KCG ++
Sbjct: 75  LLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLD 134

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F G+ ERNV +W ++      +    +++ LF  M ++G+ PNE +   +L  C 
Sbjct: 135 DSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA 194

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +   + GR+    +  + G++        LVD+Y +AG ++ A+ V   +   P   +W
Sbjct: 195 GLQEGDLGRK-IHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSW 252

Query: 262 GALLNACRMYKNTEMG 277
            A++  C ++   ++ 
Sbjct: 253 NAIIAGCVLHDCNDLA 268



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 118/254 (46%), Gaps = 2/254 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A++   +K G+++ A  +F ++   D ++WNA++AG      +  AL L   M+
Sbjct: 217 DQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMK 276

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + N  ++ S L AC  +G  + GR  H  + +      +     LVDMYSKC  M+
Sbjct: 277 GSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMD 336

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   +  M ++++  W ++I G +  G    ++ LFS M    +  N+ T  +VL+   
Sbjct: 337 DARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA 396

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +  ++  ++   ++  + GI         L+D YG+   +DEA  +  +   +    A+
Sbjct: 397 SLQAIKVCKQ-IHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLV-AY 454

Query: 262 GALLNACRMYKNTE 275
            +++ A   Y + E
Sbjct: 455 TSMITAYSQYGDGE 468



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H ++ +       +L   LV +YSKC     A        E +V +W+S++ G   NG  
Sbjct: 4   HAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFV 63

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
           E++L +F+ M   GV+ NE TF SVL+ C +   +  GR+    M    G E        
Sbjct: 64  EEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRK-VHGMAVVTGFESDGFVANT 122

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           LV +Y + G LD++  +   + ++ +  +W AL +
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGI-VERNVVSWNALFS 156


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 279/438 (63%), Gaps = 4/438 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I   AK G V  A  +F  MPER+ ++W+AM+  YA+  +  +A+ LF  M   D  
Sbjct: 218 TTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDAD 277

Query: 87  L--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           L  N +++VSVL+AC  + AL  G+  H YI R      V++  AL+ MY +CG +    
Sbjct: 278 LVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGR 337

Query: 145 DFF-WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
             F W    R+V +W S+I G  M+G G +++++F  M   G  P+ +TF+SVL  C   
Sbjct: 338 HIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHA 397

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GLV EG+  F+SM  EYG+ P  EHY C+VDL GRAG+LDEA+++I  M ++P    WGA
Sbjct: 398 GLVNEGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGA 456

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR++ + E  E+A   L +LE +N G YVLL++IYA +K  ++V  ++++++   +
Sbjct: 457 LLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHAL 516

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           +K+ GCS IEV +++H F + D  +P   +++ ++GE   ++K  GYV +T  V+YDIE 
Sbjct: 517 EKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEG 576

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           EEKE  L  HSEK+A+AFGLI+   G  IRI KNLR+C DCH VTK ISK   REI+VRD
Sbjct: 577 EEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRD 636

Query: 444 RNRFHHFKEGKCSCKGYW 461
            NRFHHF++G CSC  YW
Sbjct: 637 VNRFHHFRDGVCSCGDYW 654



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 10/264 (3%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           D +   D    T +I A A  G +  AR++FDE P ++   WNA+L   A      EAL 
Sbjct: 101 DPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALA 160

Query: 76  LFHLMQIHDVKLNEVSMVSVLSAC-----THLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
               M    V ++  S    L AC     +H  A  + R  H +  R    +   + T L
Sbjct: 161 RLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTL 220

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVRP 188
           +D Y+K G +  A   F  M ERNV +W+++IG  A N     ++ELF  M    A + P
Sbjct: 221 IDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVP 280

Query: 189 NEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           N +T VSVL  C  V  +  G+  H   +RR  G +  +     L+ +Y R G L+    
Sbjct: 281 NSITIVSVLNACAGVNALSHGKLLHAYILRR--GFDSLVSVLNALMAMYMRCGCLEVGRH 338

Query: 248 VINKMPMKPHAGAWGALLNACRMY 271
           +   +  +    +W +L++   M+
Sbjct: 339 IFKWIGHRRDVVSWNSLISGYGMH 362


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/451 (41%), Positives = 282/451 (62%), Gaps = 2/451 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++    H+ D +  T ++   + C     A K+FDEM +RD IAWN +++ Y +  ++R+
Sbjct: 49  RILSDGHQSDSLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRD 108

Query: 73  ALHLFHLMQIHDV--KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            L +F  M   ++  + ++V+ + +L AC +LGAL+ G   H +I          L  +L
Sbjct: 109 VLVIFDGMLSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSL 168

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + MYS+ GN++KA   F GM  +NV TW+++I GLAMNG G +++  F  M + GV P++
Sbjct: 169 IAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDD 228

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           +TF  VL  C   GLV++G   F  M +E+GI P + HYGC+VDL GRAG+L +A  +I 
Sbjct: 229 LTFTGVLSACSNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIM 288

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            M +KP +  W  LL ACR+++N  +GE     L+EL+ +  G YVLL N+Y+   NW +
Sbjct: 289 SMRVKPDSTIWRTLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKK 348

Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
           V  +R+ MK KG++  P  S IE+  +VHEF   D +HP+ +EI  ML EIS++LK+AGY
Sbjct: 349 VTELRKFMKEKGIQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGY 408

Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
           VA     + +++ EEK   L  HSEK+AIAFG+++   G  IRI KNLR+C DCH+  K+
Sbjct: 409 VAEITSELPNLDAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKI 468

Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +S V+NR++I+ D  RFHHF+ G CSC  YW
Sbjct: 469 LSGVYNRQVIITDHTRFHHFRGGHCSCNDYW 499



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 4/201 (1%)

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           E   ++  M+   ++ + VS+  V+     + +L  G   H  I  +  +    L T L+
Sbjct: 7   EGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNLM 66

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS--LMKQAGVRPN 189
           D+YS C   ++A   F  M++R+   W  +I     N      L +F   L  + G  P+
Sbjct: 67  DLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPD 126

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           +VT + +L+ C  +G +E G E       E G +        L+ +Y + G LD+A  V 
Sbjct: 127 DVTCLLLLQACANLGALEFG-EKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVF 185

Query: 250 NKMPMKPHAGAWGALLNACRM 270
             M  K +   W A+++   M
Sbjct: 186 KGMHNK-NVVTWSAIISGLAM 205


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/422 (45%), Positives = 275/422 (65%), Gaps = 5/422 (1%)

Query: 1   MYAELGCLGYCQKVFDGI---HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           MYA+ G  G+ ++VFD +     P      A+I    K G VD+AR +FD+M  RD I +
Sbjct: 284 MYAKCGDFGHAREVFDAVGRGRRPQ--SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITF 341

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+ GY   G+ REAL LF  M+ HD++++  ++VS+LSAC  LGAL QGR  H  IE 
Sbjct: 342 NSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIEL 401

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             ++  + +GTAL+DMY KCG +N+A   F  M +R+V+ WT++I GLA NG G+  LE 
Sbjct: 402 RLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEY 461

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M+  G +PN V++++VL  C    L+ EGR +FD MR  Y I P +EHYGC++DL G
Sbjct: 462 FYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLG 521

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           R+G LDEA+D++  MPM+P++  W ++L+ACR++K  ++ + A+  L+++E      YV 
Sbjct: 522 RSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQ 581

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L NI  +S+ W+    +R +M+ + VKK  G S + V  +VH+F   D++HPR  EI  M
Sbjct: 582 LYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAM 641

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L EIS RLK AGY   T+ V  D++EEEKE TL  HSEK+AIAFGL+SL   +P+ I+KN
Sbjct: 642 LEEISHRLKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKN 701

Query: 418 LR 419
           LR
Sbjct: 702 LR 703



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 165/311 (53%), Gaps = 3/311 (0%)

Query: 26   QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
            QT +I    KC   D +  +F+E+P       N+++    +C     AL + H M +  V
Sbjct: 1036 QTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGV 1095

Query: 86   KLNEVSMVSVLSACTHLGA--LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
              ++V+  + + A +   +  L   +  H  + +   +M + + ++L+  Y+  G ++ +
Sbjct: 1096 TPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSS 1155

Query: 144  MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
               F G+ + NV  +T++I   A  G G +++ELF  M  +G++P+ VTF+  + GC   
Sbjct: 1156 HLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQA 1215

Query: 204  GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            G+ EEGR   + MR    ++P   H+ C+V+L  R G + EA++++ + P++ +  AW +
Sbjct: 1216 GMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSS 1275

Query: 264  LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
            LL +C+ +    +G+ A+  L+++  K+    + +SN + +  + +  + ++++   K V
Sbjct: 1276 LLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEV 1335

Query: 324  KKLPGCSVIEV 334
            KK  G S+IEV
Sbjct: 1336 KK-SGHSLIEV 1345



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 34/297 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY ELG  G  ++ FD I   D V  T +IS  AK G +  AR +  + P RD I+W ++
Sbjct: 152 MYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSL 211

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A Y++  +++EA+  F  M    +  ++V+++ VLSAC+ L  L+ G   H  ++   +
Sbjct: 212 IAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGM 271

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFF-----------WG-------------------- 149
            M+  L  AL+DMY+KCG+   A + F           W                     
Sbjct: 272 SMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFD 331

Query: 150 -MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M+ R++ T+ S+I G   +G   ++L LF  M++  +R +  T VS+L  C  +G + +
Sbjct: 332 QMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQ 391

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           GR     +     +E  +     L+D+Y + GR++EA  V  +M  K    AW A++
Sbjct: 392 GRALHACIELRL-VETDIYIGTALLDMYMKCGRVNEATIVFQRMG-KRDVHAWTAMI 446



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 5/255 (1%)

Query: 22   DVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            ++    +++   +  GD VD  + + D + E D I+WN++L+ YA  G  +EA++    M
Sbjct: 930  NIFLSNSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQM 988

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK-MTVTLGTALVDMYSKCGN 139
              H    +  S VS+L+     G    G   H  + +      +V + T L+DMY KC  
Sbjct: 989  LWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCC 1048

Query: 140  MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             + ++  F  +    +    S+I         + +LE+   M   GV P++VTF + ++ 
Sbjct: 1049 FDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKA 1108

Query: 200  CCVVGLVE-EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +         +   S   + G E  +     L+  Y  AG+L  +  +   + + P+ 
Sbjct: 1109 ISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGL-LDPNV 1167

Query: 259  GAWGALLNACRMYKN 273
              + A+++AC  Y +
Sbjct: 1168 ICFTAIISACARYGD 1182



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 4/213 (1%)

Query: 44   KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
             +F E+P ++    N +L G      + E +  F  M+   ++LN +S    +  C   G
Sbjct: 849  SLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNG 908

Query: 104  A-LDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
              L+QGR  H V ++   +   + L  +LVD+YS  G+    +     +   +V +W S+
Sbjct: 909  EWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSI 968

Query: 162  IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
            +   A  G  ++++     M   G  P+  +FVS+L      G  + G +    +  + G
Sbjct: 969  LSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQ-IHGIVHKLG 1027

Query: 222  IEPWLEHY-GCLVDLYGRAGRLDEALDVINKMP 253
                  H    L+D+YG+    D +L + N++P
Sbjct: 1028 FSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 1060



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           T ++   +K G ++ A         R+V +WTS+I   +     +++++ F  M   G+ 
Sbjct: 178 TMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIA 237

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P++VT + VL  C  +  +E G     S+ +E G+         L+D+Y + G    A +
Sbjct: 238 PDDVTVIGVLSACSQLKDLELGCS-LHSLVKEKGMSMSENLVVALIDMYAKCGDFGHARE 296

Query: 248 VINKMPMKPHAGAWGALLN 266
           V + +       +W A+++
Sbjct: 297 VFDAVGRGRRPQSWNAIID 315



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 2    YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAW 57
            YA  G L     +F+G+ +P+V+C TA+ISACA+ GD   A ++FD+M       D + +
Sbjct: 1146 YACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTF 1205

Query: 58   NAMLAGYAQCGKSREALHLFHLMQ 81
               +AG  Q G   E   +  LM+
Sbjct: 1206 LCAIAGCDQAGMFEEGRLVIELMR 1229


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/452 (40%), Positives = 288/452 (63%), Gaps = 5/452 (1%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           +KV +  +E D+V    +++   KC   ++ AR++F+ +  RD I WN ++  Y Q G++
Sbjct: 288 RKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQA 347

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           ++AL +F  MQ+ +V  NE+++ +VLSAC  LGA  QG+  H  I   R K  V L  +L
Sbjct: 348 KDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSL 407

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           ++MY++CG+++  +  F  ++++++ +W+++I   A +G     LE F  + Q G+  ++
Sbjct: 408 MNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADD 467

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           VT VS L  C   G+++EG + F SM  ++G+ P   H+ C+VDL  RAGRL+ A ++I+
Sbjct: 468 VTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIH 527

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN-HGAYVLLSNIYAESKNWD 309
            MP  P A AW +LL+ C+++ +T+     + KL ELE+++ H    LLSN+YAE+  WD
Sbjct: 528 DMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD 587

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
              +VR+    +  +K PGCS IE++  VHEF AGD++HP    I   +  +S+++K AG
Sbjct: 588 ---DVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAG 644

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           YV +   V+++++EEEKE  LC HSEK+AIA+GLIS   G P+ IVKNLR C DCH   K
Sbjct: 645 YVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAK 704

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            IS++  R+I+VRD  RFHHF+ G CSCK YW
Sbjct: 705 FISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 145/261 (55%), Gaps = 5/261 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +  D + Q A+I+  +KCG ++ ARK+FD +  RD IAWN M++GYA+ G + +AL LF 
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQ 253

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC- 137
            M  +D K N V+ + +L+ACT+L  L+QGR  H  ++ +  +  + +G  L++MY+KC 
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCS 313

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
            ++ +A   F  ++ R+V TW  +I      G  + +L++F  M+   V PNE+T  +VL
Sbjct: 314 SSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVL 373

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C V+G   +G+  H          +  LE+   L+++Y R G LD+ + V   +  K 
Sbjct: 374 SACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSLDDTVGVFAAIRDKS 431

Query: 257 HAGAWGALLNACRMYKNTEMG 277
              +W  L+ A   + ++  G
Sbjct: 432 LV-SWSTLIAAYAQHGHSRTG 451



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 138/256 (53%), Gaps = 6/256 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D++  TA+I+  A+C D++LARK FDEM ++  + WNA++AGY++ G  R AL ++  
Sbjct: 91  EFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQD 150

Query: 80  M---QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           M       +K + ++  S L AC+ +G + QGR        +       +  AL++MYSK
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSK 210

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG++  A   F  +K R+V  W ++I G A  GA  ++LELF  M     +PN VTF+ +
Sbjct: 211 CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGL 270

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR-AGRLDEALDVINKMPMK 255
           L  C  +  +E+GR     + +E+G E  L     L+++Y + +  L+EA  V  ++  +
Sbjct: 271 LTACTNLEDLEQGRAIHRKV-KEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329

Query: 256 PHAGAWGALLNACRMY 271
                W  L+ A   Y
Sbjct: 330 D-VITWNILIVAYVQY 344



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 123/237 (51%), Gaps = 8/237 (3%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
           KCG V  A  +F  +   + ++W  ++A +A+ G  REAL  +  M +  ++ +    V 
Sbjct: 4   KCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVV 63

Query: 95  VLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            +  C+    L QG+  H  I E   L+  + LGTAL+ MY++C ++  A   F  M ++
Sbjct: 64  AIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKK 123

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLM---KQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            + TW ++I G + NG    +L+++  M      G++P+ +TF S L  C VVG + +GR
Sbjct: 124 TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGR 183

Query: 211 E-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E    ++   Y  +  +++   L+++Y + G L+ A  V +++  +    AW  +++
Sbjct: 184 EIEARTVASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLKNRD-VIAWNTMIS 237



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 48/234 (20%)

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG++  A+  F  ++  N  +WT ++   A NG   ++L  +  M   G+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 193 FV------------------------------SVLRGCCVVGL------VEEGREHFDSM 216
           FV                               ++ G  ++ +      +E  R+ FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEAL----DVINKMP--MKPHAGAWGALLNACRM 270
            ++      L  +  L+  Y R G    AL    D+++K P  MKP A  + + L AC +
Sbjct: 121 GKKT-----LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSV 175

Query: 271 YKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
             +   G E+ +R +      +      L N+Y++  + +    V   +K + V
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 278/442 (62%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E +     A+    AKCG +  A  +F  M ++D I+WN M+ GY +     EAL LF  
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAE 545

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ  + K +  ++  +L AC  L ALD+GR  H Y  RN       +  A+VDMY KCG 
Sbjct: 546 MQ-RESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGL 604

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  +  +++ +WT +I G  M+G G +++  F+ M+  G+ P+EV+F+S+L  
Sbjct: 605 LVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYA 664

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL++EG + F+ M++E  IEP LEHY C+VDL  R G L +A   I  MP+KP A 
Sbjct: 665 CSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDAT 724

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL  CR++ + ++ E  + ++ ELE +N G YVLL+NIYAE++ W+ V  +R+ + 
Sbjct: 725 IWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIG 784

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+KK PGCS IE+  +++ F AGD + P+  +IE++L  +  ++K  GY   T   + 
Sbjct: 785 QRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALL 844

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           + +E EKE  LC HSEK+A+AFG+++L  G  IR+ KNLRVC DCH++ K +SK  +REI
Sbjct: 845 NADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREI 904

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD +RFHHFK+G CSC+GYW
Sbjct: 905 ILRDSSRFHHFKDGSCSCRGYW 926



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 138/272 (50%), Gaps = 13/272 (4%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQ----------TAMISACAKCGDVDLARKMFDEMPERDP 54
           L C     +V +G     ++C+           ++IS       V  A+K+FDE+ +RD 
Sbjct: 258 LKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDV 317

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           I+WN+M++GY + G     + +F  M +  V ++  +MV+V  AC ++G L  G+  H Y
Sbjct: 318 ISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSY 377

Query: 115 -IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
            I+   L   V     L+DMYSKCG++N A+  F  M E+ V +WTS+I G    G  + 
Sbjct: 378 SIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDG 437

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
           +++LF  MK  GV P+     S+L  C + G ++ G+   D + RE  +E        L 
Sbjct: 438 AIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI-RENNLETNSFVSNALT 496

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           D+Y + G + +A DV + M  K    +W  ++
Sbjct: 497 DMYAKCGSMKDAHDVFSHMK-KKDVISWNTMI 527



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 4/235 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V     ++   +KCGD++ A ++F+ M E+  ++W +M+ GY + G S  A+ LF  M+
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMK 446

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  +  ++ S+L+AC   G L  G+  H YI  N L+    +  AL DMY+KCG+M 
Sbjct: 447 SRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMK 506

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A D F  MK+++V +W ++IGG   N    ++L LF+ M++   +P+  T   +L  C 
Sbjct: 507 DAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACA 565

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +  +++GRE H  ++R  Y  + ++ +   +VD+Y + G L  A  + + +P K
Sbjct: 566 SLAALDKGREIHGYALRNGYSEDKYVTN--AVVDMYVKCGLLVLARSLFDMIPNK 618



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 142/338 (42%), Gaps = 37/338 (10%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D +    ++    KCGD+   R +FD++ E     WN M++ Y+  G   E+++LF  M 
Sbjct: 184 DGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQML 243

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K N  +  S+L     +  +++GR  H  I +       T+  +L+  Y     + 
Sbjct: 244 ELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVR 303

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +R+V +W S+I G   NG  ++ +E+F  M   GV  +  T V+V   C 
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACA 363

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK------ 255
            +G +  G+       +   ++  +     L+D+Y + G L+ A+ V  +M  K      
Sbjct: 364 NIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWT 423

Query: 256 ----------------------------PHAGAWGALLNACRMYKNTEMGELASRKLVE- 286
                                       P   A  ++LNAC +  N + G++    + E 
Sbjct: 424 SMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN 483

Query: 287 -LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
            LET N      L+++YA+  +     +V   MK K V
Sbjct: 484 NLET-NSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDV 520



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +  D     A++    KCG + LAR +FD +P +D ++W  M+AGY   G   EA++ F+
Sbjct: 585 YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFN 644

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSK 136
            M++  ++ +EVS +S+L AC+H G LD+G W    I +   ++   L     +VD+ ++
Sbjct: 645 QMRMTGIEPDEVSFISILYACSHSGLLDEG-WKIFNIMKKECQIEPNLEHYACMVDLLAR 703

Query: 137 CGNMNKAMDFFWGMKER-NVYTWTSVIGG 164
            GN+ KA  F   M  + +   W +++ G
Sbjct: 704 TGNLVKAHKFIKAMPIKPDATIWGALLCG 732



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           + + G  + A+ L    Q  +  L   +  S+L  C    ++  GR     IE + + + 
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNFDLG--AYCSILQLCAERKSIRDGRRVRSIIESSGVMID 184

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             LG  LV MY KCG++ +    F  + E  ++ W  +I   + +G   +S+ LF  M +
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
            G++PN  TF S+L+    V  VEEGR+
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEGRQ 272


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/462 (44%), Positives = 283/462 (61%), Gaps = 23/462 (4%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G L   +KVFD  HE D V   +++   A  GDV+  R+ F  M  RD ++WN ++
Sbjct: 123 YAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTII 182

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A   + G+  EA+ +F              M++ +        L  G+   V  ER    
Sbjct: 183 AWCVENGEYEEAIAVFR------------EMLASMECLPDRVTLFPGKGIEVE-ER---- 225

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
               L +AL++MYSKC  +  A+  F  +  + NV TW +++ G   NG  EK+LELF+ 
Sbjct: 226 ----LSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFAR 281

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  G+ PN++TF +VL  C   G VEEG   F+ M + YGIEP + HYGC+VDL+ RAG
Sbjct: 282 MEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAG 341

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
             D+A  +I  MPMKP A  W AL+ AC+ ++N E+G  A   L+E    +H  YVLLSN
Sbjct: 342 LFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGYVLLSN 401

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA   NW  V  VR++M  +GV+K+PG S IE+D  +HEF +GD++H    +I  ML E
Sbjct: 402 IYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSE 461

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           + ++LK+AGYV +T+ V+ DI++E+ KE +L  HSEK+AIAFGLIS   G PIRI KNLR
Sbjct: 462 MCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLR 521

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH+  K++SK++ R IIVRD NRFHHF+EG CSC  +W
Sbjct: 522 VCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/458 (41%), Positives = 283/458 (61%), Gaps = 1/458 (0%)

Query: 4    ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
            +LG   + Q V + +   D V  TA++   AK   ++ A  +F+ + +RD  AW  ++AG
Sbjct: 549  DLGKQVHAQIVKNSLDGNDFV-GTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 607

Query: 64   YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
            YAQ G+  +A+  F  MQ   VK NE ++ S LS C+ +  LD GR  H    +      
Sbjct: 608  YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 667

Query: 124  VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
            + + +ALVDMY+KCG +  A   F G+  R+  +W ++I G + +G G K+L+ F  M  
Sbjct: 668  MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD 727

Query: 184  AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
             G  P+EVTF+ VL  C  +GL+EEG++HF+S+ + YGI P +EHY C+VD+ GRAG+  
Sbjct: 728  EGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFH 787

Query: 244  EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
            E    I +M +  +   W  +L AC+M+ N E GE A+ KL ELE +    Y+LLSN++A
Sbjct: 788  EVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFA 847

Query: 304  ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
                WD V NVR +M  +GVKK PGCS +EV+ +VH F + D +HP+  EI + L ++ +
Sbjct: 848  AKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQ 907

Query: 364  RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
            +L   GY  NT+ V++++ + EK++ L  HSE++A+AF L+S      IRI KNLR+C D
Sbjct: 908  KLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGD 967

Query: 424  CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            CHD  K IS++ N+E++VRD N FHHFK G CSC+ +W
Sbjct: 968  CHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 2/229 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G    + VC  A+++   K G V    ++F+    RD I+WNA+L+G+         L +
Sbjct: 461 GFEYDNTVCN-ALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRI 519

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F+ M       N  + +S+L +C+ L  +D G+  H  I +N L     +GTALVDMY+K
Sbjct: 520 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 579

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
              +  A   F  + +R+++ WT ++ G A +G GEK+++ F  M++ GV+PNE T  S 
Sbjct: 580 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 639

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           L GC  +  ++ GR+   SM  + G    +     LVD+Y + G +++A
Sbjct: 640 LSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 687



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 136/256 (53%), Gaps = 5/256 (1%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           Q +  GI+ PD     ++++  AKCG  + A K+F E+PERD ++W A++ G+   G   
Sbjct: 153 QVIKSGIN-PDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGS 211

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
            A++LF  M+   V+ NE +  + L AC+    L+ G+  H    +      + +G+ALV
Sbjct: 212 GAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALV 271

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           D+Y+KCG M  A   F  M ++N  +W +++ G A  G  EK L LF  M  + +  ++ 
Sbjct: 272 DLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKF 331

Query: 192 TFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T  +VL+GC   G +  G+  H  ++R    ++ ++    CLVD+Y + G   +AL V  
Sbjct: 332 TLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS--CCLVDMYSKCGLAGDALKVFV 389

Query: 251 KMPMKPHAGAWGALLN 266
           ++   P   +W A++ 
Sbjct: 390 RIE-DPDVVSWSAIIT 404



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 129/246 (52%), Gaps = 2/246 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   +A++   AKCG++ LA ++F  MP+++ ++WNA+L G+AQ G + + L+LF  M 
Sbjct: 263 DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMT 322

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++  ++ ++ +VL  C + G L  G+  H    R   ++   +   LVDMYSKCG   
Sbjct: 323 GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  +++ +V +W+++I  L   G   ++ E+F  M+ +GV PN+ T  S++    
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +G +  G E   +   +YG E        LV +Y + G + +   V      +    +W
Sbjct: 443 DLGDLYYG-ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLI-SW 500

Query: 262 GALLNA 267
            ALL+ 
Sbjct: 501 NALLSG 506



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 129/265 (48%), Gaps = 10/265 (3%)

Query: 25  CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           C   M S C   GD   A K+F  + + D ++W+A++    Q G+SREA  +F  M+   
Sbjct: 370 CLVDMYSKCGLAGD---ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V  N+ ++ S++SA T LG L  G   H  + +   +   T+  ALV MY K G++    
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F     R++ +W +++ G   N   +  L +F+ M   G  PN  TF+S+LR C  + 
Sbjct: 487 RVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            V+ G++ H   ++       ++     LVD+Y +   L++A  + N++ +K    AW  
Sbjct: 547 DVDLGKQVHAQIVKNSLDGNDFVGT--ALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTV 603

Query: 264 LLNACRMYKNTEMGELASRKLVELE 288
           ++     Y     GE A +  ++++
Sbjct: 604 IVAG---YAQDGQGEKAVKCFIQMQ 625



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 4/174 (2%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C   G L++G+  H  + ++ +     L  +LV++Y+KCG+ N A   F  + ER+
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HF 213
           V +WT++I G    G G  ++ LF  M++ GV  NE T+ + L+ C +   +E G++ H 
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           ++++   G    L     LVDLY + G +  A  V   MP K +A +W ALLN 
Sbjct: 254 EAIK--VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNG 304


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 277/440 (62%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++    ++S  AKCG +D A + FD M  +D ++++A+++G  Q G +  AL +F +MQ
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ 405

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +  +  +M+ VL AC+HL AL  G  +H Y+          +  AL+DMYSKCG ++
Sbjct: 406 LSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKIS 465

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  M   ++ +W ++I G  ++G G ++L LF  +   G++P+++TF+ +L  C 
Sbjct: 466 FAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EGR  FD+M R++ I P +EH  C+VD+ GRAG +DEA   I  MP +P    W
Sbjct: 526 HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 585

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ACR++KN E+GE  S+K+  L  ++ G +VLLSNIY+ +  WD   ++R   K  
Sbjct: 586 SALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDW 645

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK+PGCS IE++  VH F  GD++H + ++I   L E+   +K  GY A  + V  D+
Sbjct: 646 GLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDV 705

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEEEKE  L  HSEK+AIAFG+++LK G PI + KNLRVC DCH   K ++ +  REI V
Sbjct: 706 EEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITV 765

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHFK G C+C  +W
Sbjct: 766 RDANRFHHFKNGTCNCGDFW 785



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 139/260 (53%), Gaps = 10/260 (3%)

Query: 9   GYC-QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           GYC ++ FD      VV  T ++   AKC  +  ARK+FD M  R+ ++W+AM+ GY   
Sbjct: 234 GYCVRRSFDN----GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289

Query: 68  GKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
              +EAL LF  M + D +    V++ SVL AC  L  L +GR  H YI +    + + L
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILL 349

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
           G  L+ MY+KCG ++ A+ FF  M  ++  ++++++ G   NG    +L +F +M+ +G+
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            P+  T + VL  C  +  ++ G   H   + R +  +  +     L+D+Y + G++  A
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI--CNALIDMYSKCGKISFA 467

Query: 246 LDVINKMPMKPHAGAWGALL 265
            +V N+M  +    +W A++
Sbjct: 468 REVFNRMD-RHDIVSWNAMI 486



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 132/260 (50%), Gaps = 5/260 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV   TA++   AKCG +  A+++F  M  RD +AWNAM+AG +  G   +A+ L   
Sbjct: 141 ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQ 200

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +  N  ++V VL       AL  G+  H Y  R      V +GT L+DMY+KC  
Sbjct: 201 MQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC 260

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLR 198
           +  A   F  M  RN  +W+++IGG   +   +++LELF  ++ +  + P  VT  SVLR
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +  +  GR+ H   ++    ++  L +   L+ +Y + G +D+A+   + M  K  
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGXVLDILLGN--TLLSMYAKCGVIDDAIRFFDXMNPKDS 378

Query: 258 AGAWGALLNACRMYKNTEMG 277
             ++ A+++ C    N  + 
Sbjct: 379 V-SFSAIVSGCVQNGNAAVA 397



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 90/163 (55%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
            C  V LAR++FDE+P    I WN ++  YA  G    A+ L+H M    V+ N+ +   
Sbjct: 55  SCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPF 114

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL AC+ L A++ G   H + +   L+  V + TALVD Y+KCG + +A   F  M  R+
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD 174

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           V  W ++I G ++ G  + +++L   M++ G+ PN  T V VL
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL 217



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 2/177 (1%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L AC    +L + +  H +  +N      ++   L  +Y  C  +  A   F  +   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           V  W  +I   A NG  + +++L+  M   GVRPN+ T+  VL+ C  +  +E+G E   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           S  + +G+E  +     LVD Y + G L EA  + + M  +    AW A++  C +Y
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD-VVAWNAMIAGCSLY 188


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/440 (43%), Positives = 280/440 (63%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   ++++   AKCG++  AR +FDEMPER+ ++W+ M+ GYAQ     EAL LF    
Sbjct: 160 DVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQAL 219

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           I DV +N+ +  SV+  C+    L+ G+  H    +     +  +G+AL+ +YSKCG + 
Sbjct: 220 IEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIE 279

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  RN+  W S++   A +   ++   LF  M   G++PN + F+SVL  C 
Sbjct: 280 GAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACS 339

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVE+GRE+F S+ R+YGIEP  EHY  LVDL GRAG+L EA+ VI +MPM+P    W
Sbjct: 340 HAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVW 398

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL  CR++K+TEM    + +++E+++ + G +VLLSN YA +  ++    +R++++ +
Sbjct: 399 GALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDR 458

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK  G S +E   +VH F AGD +H ++ EI   L E+   ++ AGYVA+T+ V+  +
Sbjct: 459 GVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAV 518

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           + EEK +T+  HSE++AIAFGLI+   G PIR++KNLRVC DCH   K +SK   R +IV
Sbjct: 519 DGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIV 578

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFH F++GKCSC  YW
Sbjct: 579 RDNNRFHRFEDGKCSCGDYW 598



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 4/233 (1%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
           ++FDE P++    W+++++ +AQ      AL  F  M    V+ ++    S   AC  L 
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
             D G+  H    +      V +G++LVDMY+KCG +  A   F  M ERNV +W+ +I 
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIY 200

Query: 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGI 222
           G A    G ++L LF       V  N+ TF SV+R C     +E G+  H   ++  +  
Sbjct: 201 GYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDS 260

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
             ++     L+ LY + G ++ A  V +++P + + G W ++L AC  + +T+
Sbjct: 261 SSFVG--SALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIACAQHAHTQ 310



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 3/200 (1%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N   + ++L + T   +L QG   H +I +  L+    +   L+++YSK      ++  F
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
               +++  TW+SVI   A N A   +L+ F  M   GVRP++  + S  + C  +   +
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            G+  H  +++  Y  + ++     LVD+Y + G + +A  + ++MP +      G +  
Sbjct: 144 VGKSVHCLAVKTGYYCDVFVG--SSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYG 201

Query: 267 ACRMYKNTEMGELASRKLVE 286
             ++    E   L  + L+E
Sbjct: 202 YAQLDDGVEALTLFKQALIE 221


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 286/444 (64%), Gaps = 4/444 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAK-CGDVDLARKMFDEMPERDPIAWNAM 60
           YA  G L + ++VFDG  + D+V    ++   A+  GD DL R  F  MP RD ++WN +
Sbjct: 124 YAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNTV 183

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L+     G+  EA+ +F  ++   + + + V++VSV+SA  +LGAL QG WAH Y+ R  
Sbjct: 184 LSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKG 243

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178
           +++   L +AL++MYSKCG +  A+  F  ++ +R++ TW +++ G   NG   ++L LF
Sbjct: 244 VEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRALALF 303

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
           + M+  G+ PN++TF  +L  C   GLVEEG   F  M R YGIEP + HYGC+VDL+ R
Sbjct: 304 TRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCR 363

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AG  ++A ++I  MPM+P A    ALL ACR +KN E+G+ A  +L+E    +H  YVLL
Sbjct: 364 AGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAGYVLL 423

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA   NW RV  VR++M  +GV K PG S +E++  +HEF +GD++H R  +I  ML
Sbjct: 424 SNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKML 483

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            EI ++LK AGY  +T+ V+ DI++E+ KE +L  HSEK+AIAFGLIS   G PIR+V N
Sbjct: 484 DEICQQLKSAGYTPDTSQVLLDIDDEDVKESSLAVHSEKLAIAFGLISTAPGTPIRVVNN 543

Query: 418 LRVCWDCHDVTKMISKVFNREIIV 441
           LR+C DCH+  K++SK++ R  + 
Sbjct: 544 LRICGDCHNAIKLLSKIYGRNPLT 567


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/450 (41%), Positives = 285/450 (63%), Gaps = 1/450 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V    +E   +  TA++++ +K  + + A  +F  + ++D ++W+AML  YAQ G S  
Sbjct: 429 QVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDG 488

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALV 131
           A ++F  M +H +K NE ++ SV+ AC    A +D GR  H    ++R    + + +ALV
Sbjct: 489 ATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALV 548

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
            MY++ G++  A   F    +R++ +W S++ G A +G  +K+L++F  M+  G+  + V
Sbjct: 549 SMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGV 608

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TF+SV+ GC   GLVEEG+ +FDSM R+YGI P +EHY C+VDLY RAG+LDEA+ +I  
Sbjct: 609 TFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEG 668

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           M        W  LL AC+++KN E+G+LA+ KL+ LE  +   YVLLSNIY+ +  W   
Sbjct: 669 MSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEK 728

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR++M  K VKK  GCS I++  +VH F A D++HP   +I   L  ++ +LK  GY 
Sbjct: 729 DEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYC 788

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +T+  ++++ EE+KE  L  HSE++A+AFGLI+   G P+ I KNLRVC DCH V KM+
Sbjct: 789 PDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMV 848

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SK+ +REI++RD +RFHHF  G CSC  +W
Sbjct: 849 SKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 3/248 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T+++    K   V   RK+F+ MP+R+ + W ++L GY Q G   + + LF  M+
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N V+  SVLS     G +D GR  H    +     TV +  +L++MY+KCG + 
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F GM+ R++ +W +++ GL +NG   ++L+LF   + +     + T+ +V++ C 
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  +   R+ H   ++R  G   +      L+D Y +AG+L  ALD+   M    +  +
Sbjct: 318 NIKQLGLARQLHSSVLKR--GFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVS 375

Query: 261 WGALLNAC 268
           W A++N C
Sbjct: 376 WTAMINGC 383



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 7   CLGYCQKVFDGIHEPDVVCQTAMISACA-------KCGDVDLARKMFDEMPERDPIAWNA 59
           CL   +    G   P++  ++    AC+          D   AR+ FDE+P R+ +  + 
Sbjct: 15  CLAQLRGKNAGALAPELAPKSQSTLACSVPLENQTNLNDATGARQAFDEIPHRNTL--DH 72

Query: 60  MLAGYAQCGKSREAL-HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-VYIER 117
            L  +A+ G   +AL H   + + H  ++   ++V VL  C  +     G+  H + I  
Sbjct: 73  ALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRC 132

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
              +  V +GT+LVDMY K  ++      F  M +RNV TWTS++ G   +GA    +EL
Sbjct: 133 GHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMEL 192

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLY 236
           F  M+  GV PN VTF SVL      G+V+ GR  H  S++  +G    +     L+++Y
Sbjct: 193 FFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK--FGCCSTVFVCNSLMNMY 250

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + G ++EA  V   M  +    +W  L+
Sbjct: 251 AKCGLVEEARVVFCGMETRDMV-SWNTLM 278



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 7/221 (3%)

Query: 27  TAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           TA++ A +K G +  A  +F  M   ++ ++W AM+ G  Q G    A  LF  M+   V
Sbjct: 345 TALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGV 404

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             N+ +  ++L+A   + +L      H  + +   + T  +GTAL+  YSK  N  +A+ 
Sbjct: 405 APNDFTYSTILTAS--VASLPP--QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALS 460

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV-VG 204
            F  + +++V +W++++   A  G  + +  +F  M   G++PNE T  SV+  C     
Sbjct: 461 IFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTA 520

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            V+ GR+ F ++  ++     L     LV +Y R G ++ A
Sbjct: 521 GVDLGRQ-FHAISIKHRCHDALCVSSALVSMYARKGSIESA 560


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 271/440 (61%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           + + + A+++   +CG ++ ARK+FD M   D  +W  M+    +  +  EAL LFH M 
Sbjct: 10  NAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMN 69

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +    V++ SVL+AC   GAL  G+  H  ++ +    +V   TAL+DMY+KCG++ 
Sbjct: 70  LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLE 129

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  M+ RN  +WT++I  LA +G G+++LELF  M   G+  +  TF+ VLR C 
Sbjct: 130 CSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACS 189

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL++E  E F SM  +Y I P   HY   +D  GRAGRL +A ++I+ MP  P    W
Sbjct: 190 HAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTW 249

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LLNACR++   E     +  L +L  ++  AY LL N+YA ++ +   + VR+ M  +
Sbjct: 250 KTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDR 309

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+KK+PG S IEV  +VHEF AGD  HP  +EI + L ++  R++ AGYV NT  V++ +
Sbjct: 310 GLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAV 369

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EEEKE  +  HSEK+AIAFGLI+   G P+ IVKNLRVC DCH  TK+I+K+  R I+V
Sbjct: 370 NEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVV 429

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD +RFHHF++G+CSCK YW
Sbjct: 430 RDTHRFHHFEDGQCSCKDYW 449



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 33/185 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L    KVF  +   + V  TAMI+A A+ G  D                    
Sbjct: 121 MYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGD-------------------- 160

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                      EAL LF  M +  +  +  + + VL AC+H G + +   + H  +E   
Sbjct: 161 -----------EALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYA 209

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178
           +  T T     +D   + G +  A +    M       TW +++    ++   E++ ++ 
Sbjct: 210 IAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERATKVA 269

Query: 179 SLMKQ 183
            L+ +
Sbjct: 270 ELLAK 274


>gi|302800080|ref|XP_002981798.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
 gi|300150630|gb|EFJ17280.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
          Length = 483

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/442 (42%), Positives = 274/442 (61%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D V  T +I+  ++C   D A ++FD M  +  + W AM+A ++Q G+  EAL LF  
Sbjct: 42  ELDTVLGTNLINMYSRCDVPDKAIEVFDAMHNKSVVVWTAMIAAHSQQGQGLEALELFKR 101

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M I  V+ ++V+   VL  C +L AL Q R  H  +    L+  + +   LV+MY KCG 
Sbjct: 102 MDIEGVRADKVAFSLVLDVCANLAALAQARILHATVAGTELEQDMVVKNTLVNMYGKCGK 161

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N+A   F  M  +++ +WTS+I   A  G+   + ELF  M+QAG   + V FV V+ G
Sbjct: 162 LNEARQVFEKMASKDMVSWTSIIAAYAQQGSASAAFELFHAMQQAGEAIDTVIFVKVMSG 221

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+++ R  F SM ++YG+ P  E+Y C++DL GR G+L +  D++  M ++P   
Sbjct: 222 CNHAGLLKDARNWFVSMLQDYGLSPVNENYACILDLLGRLGQLQDVEDLLENMTLEPDFI 281

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           AW + LNAC+++K+ + G  A+++LV+L  +N  +YVLLS+I+A    +D    +R+ + 
Sbjct: 282 AWMSFLNACKVHKDMKRGVRAAQRLVQLNRRNSASYVLLSDIHAVCGKFDAAAKLRRRIG 341

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
               KK+PG S IE+  +VH+F +G  THPR +EI   L  +   ++ AGYV +T  V+ 
Sbjct: 342 RDCGKKVPGLSWIEIKDKVHKFASGSRTHPRNDEIFAELQRLGVLMREAGYVPDTEVVLM 401

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEEEKE  LC HSEK A+AFGLIS   G P+R+VKNLRVC DCH  TK ISK+  R+I
Sbjct: 402 DVEEEEKEQVLCYHSEKQAMAFGLISTPSGTPLRVVKNLRVCTDCHTATKFISKITGRQI 461

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            VRD NRFH FK+G CSCK YW
Sbjct: 462 TVRDANRFHEFKDGFCSCKDYW 483



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 4/189 (2%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++  ++ +  +  SV+ AC  L  L  G+  H  +     ++   LGT L++MYS+C  
Sbjct: 1   MELEGLRGDRSTFTSVIEACACLPDLTLGQLLHYRMITLGCELDTVLGTNLINMYSRCDV 60

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            +KA++ F  M  ++V  WT++I   +  G G ++LELF  M   GVR ++V F  VL  
Sbjct: 61  PDKAIEVFDAMHNKSVVVWTAMIAAHSQQGQGLEALELFKRMDIEGVRADKVAFSLVLDV 120

Query: 200 CCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  + + R  H      E  +E  +     LV++YG+ G+L+EA  V  KM  K   
Sbjct: 121 CANLAALAQARILHATVAGTE--LEQDMVVKNTLVNMYGKCGKLNEARQVFEKMASKDMV 178

Query: 259 GAWGALLNA 267
            +W +++ A
Sbjct: 179 -SWTSIIAA 186


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/447 (42%), Positives = 283/447 (63%), Gaps = 8/447 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D+   + ++    KCGD+  A+  FD +P  D +AW  +++G  + G+   ALH+F 
Sbjct: 555 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFS 614

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT----LGTALVDMY 134
            M++  V  +E ++ ++  A + L AL+QGR  H     N LK+  T    +GT+LVDMY
Sbjct: 615 QMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA----NALKLNCTSDPFVGTSLVDMY 670

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           +KCG+++ A   F  ++  N+  W +++ GLA +G G+++L+LF  M+  G++P++VTF+
Sbjct: 671 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFI 730

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            VL  C   GLV E  ++  SM R+YGI+P +EHY CL D  GRAG + EA ++I+ M M
Sbjct: 731 GVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSM 790

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +  A  +  LL ACR+  +TE G+  + KL+ELE  +  AYVLLSN+YA +  WD +   
Sbjct: 791 EASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLA 850

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R +MK   VKK PG S IEV  ++H F   D ++P+   I   + ++ R +K  GYV  T
Sbjct: 851 RTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPET 910

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
           +  + D+EEEEKE  L  HSEK+A+AFGL+S     PIR++KNLRVC DCH+  K ISKV
Sbjct: 911 DFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKV 970

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ++REI++RD NRFH FK+G CSC  YW
Sbjct: 971 YDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 132/250 (52%), Gaps = 15/250 (6%)

Query: 22  DVVCQTAMISA-----CAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           D    TA+I A     C K  +V   R  FD       +AWNAM++GY Q     + L L
Sbjct: 458 DSFVSTALIDAYSRNRCMKEAEVLFGRNNFD------LVAWNAMMSGYTQSHDGHKTLEL 511

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F LM     + ++ ++ +VL  C  L A++QG+  H Y  ++   + + + + ++DMY K
Sbjct: 512 FALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVK 571

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG+M+ A   F  +   +   WT++I G   NG  E++L +FS M+  GV P+E T  ++
Sbjct: 572 CGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATL 631

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +    +  +E+GR+ H ++++     +P++     LVD+Y + G +D+A  +  ++ M 
Sbjct: 632 AKASSCLTALEQGRQIHANALKLNCTSDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM 689

Query: 256 PHAGAWGALL 265
            +  AW A+L
Sbjct: 690 -NITAWNAML 698



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 130/248 (52%), Gaps = 6/248 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +    ++I+   K   + LAR +F+ M ERD I+WN+++AG AQ     EA+ LF  +  
Sbjct: 357 LTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLR 416

Query: 83  HDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +K +  +M SVL A + L   L   +  HV+  +        + TAL+D YS+   M 
Sbjct: 417 CGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMK 476

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A +  +G    ++  W +++ G   +  G K+LELF+LM + G R ++ T  +VL+ C 
Sbjct: 477 EA-EVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCG 535

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  + +G++ H  +++  Y ++ W+     ++D+Y + G +  A    + +P+ P   A
Sbjct: 536 FLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVA 592

Query: 261 WGALLNAC 268
           W  L++ C
Sbjct: 593 WTTLISGC 600



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS-----REALH 75
           P+      +IS  +KCG +  AR++FD+MPERD ++WN++LA YAQ  +      +EA  
Sbjct: 79  PERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFL 138

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF +++   V  + +++  +L  C H G +      H Y  +  L     +  ALV++Y 
Sbjct: 139 LFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYL 198

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           K G + +    F  M  R+V  W  ++      G  E++++L S    +G+ PNE+T 
Sbjct: 199 KFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 4/193 (2%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           I+ N +L+GY   G+    L  F  M   D++ ++V+ + VL+    L +L  G+  H  
Sbjct: 288 ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCM 347

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
             +  L + +T+  +L++MY K   +  A   F  M ER++ +W SVI G+A +    ++
Sbjct: 348 ALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEA 407

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVV--GLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           + LF  + + G++P+  T  SVL+    +  GL    + H  +++     + ++     L
Sbjct: 408 VCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS--TAL 465

Query: 233 VDLYGRAGRLDEA 245
           +D Y R   + EA
Sbjct: 466 IDAYSRNRCMKEA 478


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 281/447 (62%), Gaps = 8/447 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +  VV  TA+++   KCG ++ A + F ++ E++ +AW+A+ A YA+  ++R+A+ + H 
Sbjct: 194 QSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHR 253

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-----LKMTVTLGTALVDMY 134
           M +  +  N  + VSVL AC  + AL QGR  H   ER +     L+  V + TALV+MY
Sbjct: 254 MDLEGLVPNSTTFVSVLDACAAIAALKQGRRIH---ERTQVLGGGLESDVYVLTALVNMY 310

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           SKCGN+  A D F  +   ++  W S+I   A +G  EK+LELF  M+  G++P  +TF 
Sbjct: 311 SKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFT 370

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           SVL  C   G++++GR+HF S   ++GI P  EH+GC+VDL GRAG + ++ D++  MP 
Sbjct: 371 SVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPF 430

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +PH  AW A L ACR Y+N +    A+  L +L+ +    YVLLSN+YA++  W  V  +
Sbjct: 431 EPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARM 490

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           RQ M+     K  G S IEV   VHEF +GD  HPR  EI   L  +++ +K AGYV +T
Sbjct: 491 RQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDT 550

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
             V++D+++E KE  +  HSEK+A+AF L++  EG PIR+VKNLRVC DCH  +K ISK+
Sbjct: 551 EMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKL 610

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
            NREI+VRD NRFH F+ G CSC  YW
Sbjct: 611 VNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 2/237 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           GI E  +V QTA++S   K G    A  +F  M  RD +AW+AM+A YA+ G  REAL L
Sbjct: 91  GIEEESIV-QTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGL 149

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M +  V  N+V++VS L AC  LG L  G   H  +E   ++  V +GTALV++Y K
Sbjct: 150 FRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGK 209

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A++ F  + E+NV  W+++    A N     ++ +   M   G+ PN  TFVSV
Sbjct: 210 CGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSV 269

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           L  C  +  +++GR  H  +     G+E  +     LV++Y + G L  A D+ +K+
Sbjct: 270 LDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKI 326



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 3/269 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           M+SA ++ G++   RK FDEMP  D ++WNA++A Y            F  M +  +   
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           EV +   LSACT    +  GR   + I    ++    + TALV MY K G+   A   F 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M  R+V  W++++   A NG   ++L LF  M   GV PN+VT VS L  C  +G +  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA- 267
           G      +  + GI+  +     LV+LYG+ GR++ A++   ++ ++ +  AW A+  A 
Sbjct: 181 GALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAAY 238

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYV 296
            R  +N +   +  R  +E    N   +V
Sbjct: 239 ARNDRNRDAIRVLHRMDLEGLVPNSTTFV 267



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V  G  E DV   TA+++  +KCG++ LA  MFD++   D + WN+++A  AQ G++ +
Sbjct: 290 QVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEK 349

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV-YIERNRLKMTVTLGTALV 131
           AL LF  M++  ++   ++  SVL AC+H G LDQGR   V +I  + +         +V
Sbjct: 350 ALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMV 409

Query: 132 DMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           D+  + G +  + D    M  E +   W + +G 
Sbjct: 410 DLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGA 443


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/449 (45%), Positives = 281/449 (62%), Gaps = 15/449 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL----- 76
           DV   T ++ + AKCGDV  ARK+FDEMP RD   WNA+LAG AQ  +   AL L     
Sbjct: 154 DVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLA 213

Query: 77  --FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
             F  +   + + N V++V+ LSAC  LG L  G   H +         V +G AL+DMY
Sbjct: 214 GSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMY 272

Query: 135 SKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           SKCG++++A++ F  +K  +R + ++ + I  L+++G GE +L+LF  M  A + P+E+T
Sbjct: 273 SKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP-ARIEPDEIT 331

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +++V+ GC   GLV++GR  FDSMR    + P ++HYG +VDL GRAGRL EA D+I  M
Sbjct: 332 YLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGRLAEAYDMIMSM 387

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P       W  LL A +M+ N ++ ELA+ KL +L +   G YVLLSN+YA    W  V 
Sbjct: 388 PFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVG 447

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR  M++  VKK+PG S  E+D  +H+F  GD+ H R+ EI   L EI  R+   GY  
Sbjct: 448 RVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEP 507

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
            T+ V++DI EEEK+  L  HSEK+AIAFGLIS   G  IR++KNLR C DCH V K+IS
Sbjct: 508 ETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLIS 567

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K +NR II+RDR RFH F++G CSC+ YW
Sbjct: 568 KAYNRVIIIRDRARFHRFEDGHCSCRDYW 596



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM---- 167
           H  + R  +   V L T L+D Y+KCG++  A   F  M  R+V TW +++ GLA     
Sbjct: 143 HATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEP 202

Query: 168 NGAGEKSLELFSLMKQAGVR--PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
           N A      L    ++   R  PN VT V+ L  C  +G +++G        R  G    
Sbjct: 203 NLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLA-VHEFARTIGAVDN 261

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +     L+D+Y + G L  AL+V + + ++
Sbjct: 262 VCVGNALIDMYSKCGSLSRALEVFHSIKLE 291


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/446 (43%), Positives = 282/446 (63%), Gaps = 1/446 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            GIH  D+    +++S  AK G ++ A  +FDE+  +D I++ A+L+GY Q GK+ EA  
Sbjct: 335 SGIHA-DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFL 393

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           +F  MQ  +V+ +  +MVS++ AC+HL AL  GR +H  +    L +  ++  +L+DMY+
Sbjct: 394 VFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYA 453

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG ++ +   F  M  R++ +W ++I G  ++G G+++  LF  MK  G  P++VTF+ 
Sbjct: 454 KCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFIC 513

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           ++  C   GLV EG+  FD+M  +YGI P +EHY C+VDL  R G LDEA   I  MP+K
Sbjct: 514 LIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLK 573

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
                WGALL ACR++KN ++G+  SR + +L  +  G +VLLSNI++ +  +D    VR
Sbjct: 574 ADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 633

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
            I K KG KK PGCS IE++  +H F  GD++HP   +I   L  I   +K  GY A+T+
Sbjct: 634 IIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTS 693

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V+ D+EEEEKE  L  HSEK+AIAFG++SL E   I + KNLRVC DCH   K ++ V 
Sbjct: 694 FVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVR 753

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NR IIVRD NRFHHFK G+CSC  +W
Sbjct: 754 NRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 136/273 (49%), Gaps = 8/273 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL-H 75
           G+H  D+   TA+I    +C     A  +F +MP RD +AWNAMLAGYA  G    A+ H
Sbjct: 129 GLHT-DLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAH 187

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTLGTALVD 132
           L  +     ++ N  ++VS+L      GAL QG   H Y  R  L      V +GTAL+D
Sbjct: 188 LLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLD 247

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+KC ++  A   F GM  RN  TW+++IGG  +     ++  LF  M   G+     T
Sbjct: 248 MYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSAT 307

Query: 193 FV-SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            V S LR C  +  +  G +   ++  + GI   L     L+ +Y +AG ++EA  + ++
Sbjct: 308 SVASALRVCASLADLRMGTQ-LHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDE 366

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
           + +K    ++GALL+        E   L  +K+
Sbjct: 367 IAIKDTI-SYGALLSGYVQNGKAEEAFLVFKKM 398



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 128/249 (51%), Gaps = 4/249 (1%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
            YC + +   +E  V+  TA++   AKC  +  A ++F  M  R+ + W+A++ G+  C 
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 69  KSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           +  EA +LF  M +  +  L+  S+ S L  C  L  L  G   H  + ++ +   +T G
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAG 344

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            +L+ MY+K G +N+A   F  +  ++  ++ +++ G   NG  E++  +F  M+   V+
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P+  T VS++  C  +  ++ GR  H   + R   +E  +     L+D+Y + GR+D + 
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSI--CNSLIDMYAKCGRIDLSR 462

Query: 247 DVINKMPMK 255
            V +KMP +
Sbjct: 463 QVFDKMPAR 471



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 118/259 (45%), Gaps = 15/259 (5%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G + LAR++FD +P  D  A+NA++  Y+  G    A+ L+  M    V  N+ +   VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            AC+ L  L  GR  H +     L   + + TAL+D+Y +C     A + F  M  R+V 
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 157 TWTSVIGGLAMNGAGEKSL-ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            W +++ G A +G    ++  L  +  + G+RPN  T VS+L      G + +G     +
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQG-----T 221

Query: 216 MRREYGIEPWLEHY-------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
               Y +  +L+           L+D+Y +   L  A  V + M ++     W AL+   
Sbjct: 222 SVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEV-TWSALIGGF 280

Query: 269 RMY-KNTEMGELASRKLVE 286
            +  + TE   L    LVE
Sbjct: 281 VLCDRMTEAFNLFKDMLVE 299


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/449 (45%), Positives = 281/449 (62%), Gaps = 15/449 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL----- 76
           DV   T ++ + AKCGDV  ARK+FDEMP RD   WNA+LAG AQ  +   AL L     
Sbjct: 188 DVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLA 247

Query: 77  --FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
             F  +   + + N V++V+ LSAC  LG L  G   H +         V +G AL+DMY
Sbjct: 248 GSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMY 306

Query: 135 SKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           SKCG++++A++ F  +K  +R + ++ + I  L+++G GE +L+LF  M  A + P+E+T
Sbjct: 307 SKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP-ARIEPDEIT 365

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +++V+ GC   GLV++GR  FDSMR    + P ++HYG +VDL GRAGRL EA D+I  M
Sbjct: 366 YLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGRLAEAYDMIMSM 421

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P       W  LL A +M+ N ++ ELA+ KL +L +   G YVLLSN+YA    W  V 
Sbjct: 422 PFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVG 481

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR  M++  VKK+PG S  E+D  +H+F  GD+ H R+ EI   L EI  R+   GY  
Sbjct: 482 RVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEP 541

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
            T+ V++DI EEEK+  L  HSEK+AIAFGLIS   G  IR++KNLR C DCH V K+IS
Sbjct: 542 ETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLIS 601

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K +NR II+RDR RFH F++G CSC+ YW
Sbjct: 602 KAYNRVIIIRDRARFHRFEDGHCSCRDYW 630



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM---- 167
           H  + R  +   V L T L+D Y+KCG++  A   F  M  R+V TW +++ GLA     
Sbjct: 177 HATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEP 236

Query: 168 NGAGEKSLELFSLMKQAGVR--PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
           N A      L    ++   R  PN VT V+ L  C  +G +++G        R  G    
Sbjct: 237 NLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLA-VHEFARTIGAVDN 295

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +     L+D+Y + G L  AL+V + + ++
Sbjct: 296 VCVGNALIDMYSKCGSLSRALEVFHSIKLE 325


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/442 (44%), Positives = 269/442 (60%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    +     +K G  + ARKMFDEMPER+   WNA L+     G+  +AL  F   +
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEAR 201

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++  +  + SVLSAC  L  L+ G+  H    +  +   + +G+ALVDMY KCG++ 
Sbjct: 202 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 261

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPNEVTFVSVLRG 199
            A   F  M ERN+ TW ++IGG A  G  + ++ LF  M      V PN VTFV VL  
Sbjct: 262 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSA 321

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G V  G E F+SMR  YGIEP  EHY C+VDL GRAG +++A   I KMP++P   
Sbjct: 322 CSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVS 381

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALL A +M+  +E+G++A+  L EL+  + G +VLLSN++A +  W+    VR+ MK
Sbjct: 382 VWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMK 441

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G+KK  GCS I     VH F A D +H R +EI+ ML ++   ++ AGY+ +T+  ++
Sbjct: 442 DVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALF 501

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEEEK   +  HSEK+A+AFGLIS+  GVPIRI KNLR+C DCH   K IS +  REI
Sbjct: 502 DLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREI 561

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD N FH F++ +CSC+ YW
Sbjct: 562 IVRDNNLFHRFRDNQCSCRDYW 583



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 118/264 (44%), Gaps = 5/264 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +++  +K    + A+ +    P R  + W A++AG  Q G+   AL  F  M+   ++ N
Sbjct: 48  LVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPN 107

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           + +      A   L +   G+  H    +      V +G +  DMYSK G   +A   F 
Sbjct: 108 DFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFD 167

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M ERN+ TW + +    + G  + +L  F   ++ G+ P +    SVL  C  + ++E 
Sbjct: 168 EMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEV 227

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G+    ++  +  +   +     LVD+YG+ G +++A    ++MP + +   W A++   
Sbjct: 228 GKS-VHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPER-NLVTWNAMIGG- 284

Query: 269 RMYKNTEMGELASRKLVELETKNH 292
             Y +    ++A     E+   +H
Sbjct: 285 --YAHQGQADMAVTLFDEMTCGSH 306



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 37/177 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   ++ FD + E ++V   AMI   A  G  D+A  +FDEM           
Sbjct: 253 MYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM----------- 301

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                 CG              H V  N V+ V VLSAC+  G+++ G       E  R 
Sbjct: 302 -----TCGS-------------HRVAPNYVTFVCVLSACSRAGSVNVGM---EIFESMRG 340

Query: 121 KMTVTLG----TALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGE 172
           +  +  G      +VD+  + G + +A  F   M  R  V  W +++G   M G  E
Sbjct: 341 RYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 397


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/461 (43%), Positives = 277/461 (60%), Gaps = 1/461 (0%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAM 60
           Y E G L      F       VV  TAMI+   K   V+LA  MF +M   ++ + WNAM
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY +  +  + L LF  M    ++ N   + S L  C+ L AL  GR  H  + ++ L
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL 315

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              VT  T+L+ MY KCG +  A   F  MK+++V  W ++I G A +G  +K+L LF  
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFRE 375

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M    +RP+ +TFV+VL  C   GLV  G  +F+SM R+Y +EP  +HY C+VDL GRAG
Sbjct: 376 MIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAG 435

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L+EAL +I  MP +PHA  +G LL ACR++KN E+ E A+ KL++L ++N   YV L+N
Sbjct: 436 KLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLAN 495

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    W+ V  VR+ MK   V K+PG S IE+  +VH F + D  HP  + I   L E
Sbjct: 496 IYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKE 555

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + +++KLAGY       ++++EEE+KE  L  HSEK+A+AFG I L +G  I++ KNLR+
Sbjct: 556 LEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRI 615

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K IS++  REIIVRD  RFHHFK+G CSC  YW
Sbjct: 616 CGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 138/308 (44%), Gaps = 24/308 (7%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            ++FD I EPD      M+S   +  + + A+  FD MP +D  +WN M+ GYA+ G+  
Sbjct: 113 HQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEME 172

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           +A  LF+ M    ++ NEVS  +++S     G L++   +H +  +      V   TA++
Sbjct: 173 KARELFYSM----MEKNEVSWNAMISGYIECGDLEKA--SHFF--KVAPVRGVVAWTAMI 224

Query: 132 DMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
             Y K   +  A   F  M   +N+ TW ++I G   N   E  L+LF  M + G+RPN 
Sbjct: 225 TGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNS 284

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
               S L GC  +  ++ GR+    + +       +     L+ +Y + G L +A  +  
Sbjct: 285 SGLSSALLGCSELSALQLGRQIHQIVSKSTLCND-VTALTSLISMYCKCGELGDAWKLFE 343

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-------------NHGAYVL 297
            M  K    AW A+++    + N +      R++++ + +             NH   V 
Sbjct: 344 VMK-KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402

Query: 298 LSNIYAES 305
           +   Y ES
Sbjct: 403 IGMAYFES 410



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 32/154 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G LG   K+F+ + + DVV   AMIS  A+ G+ D                    
Sbjct: 328 MYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNAD-------------------- 367

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                      +AL LF  M  + ++ + ++ V+VL AC H G ++ G  +    +   +
Sbjct: 368 -----------KALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYK 416

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++      T +VD+  + G + +A+     M  R
Sbjct: 417 VEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 281/448 (62%), Gaps = 13/448 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T ++ + AKCGD+  ARK+FDEM  RD   WN++LAG AQ  +   AL LFH + 
Sbjct: 147 DVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLA 206

Query: 82  IHDVKL------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
               +L      NEV++V+VLSAC  +G L  G + H + ++  L   V +  +L+DMYS
Sbjct: 207 NSFQELPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDRNVRVCNSLIDMYS 266

Query: 136 KCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           KCG++++A+D F  +K  +R + ++ + I   +M+G G  +L LF  M    + P+ VT+
Sbjct: 267 KCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTY 325

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++VL GC   GLV++G   F+SMR    + P ++HYG +VDL GRAGRL EA D +  MP
Sbjct: 326 LAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMP 381

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
                  W  LL A +M+   E+ ELA+ KL EL +   G YVLLSN+YA    W  V  
Sbjct: 382 FPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGR 441

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR  M++  V+K+PG S  E+D  +H+F  GD+ HPR+ EI   L +I  R+   GY   
Sbjct: 442 VRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPE 501

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           T+ V++DI EEEK+  LC HSEK+AIAFGLI+   G  +R++KNLR+C DCH V K+ISK
Sbjct: 502 TSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISK 561

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            + R I++RDR RFH F++G+CSC+ YW
Sbjct: 562 AYGRVIVIRDRARFHRFEDGQCSCRDYW 589



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 9/151 (5%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R  +   V L T L+D Y+KCG++  A   F  M  R+V TW S++ GLA     
Sbjct: 136 HALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEP 195

Query: 172 EKSLELFSLMKQAGV------RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
             +L LF  +  +         PNEVT V+VL  C  +GL+++G  +     +++G++  
Sbjct: 196 NLALALFHRLANSFQELPSREEPNEVTIVAVLSACAQIGLLKDGM-YVHEFAKKFGLDRN 254

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           +     L+D+Y + G L  ALDV +   +KP
Sbjct: 255 VRVCNSLIDMYSKCGSLSRALDVFHS--IKP 283


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/442 (40%), Positives = 273/442 (61%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D +  T++++   KC +VD AR +FD +P ++ + WN M+A Y+Q  + ++A+ +F  
Sbjct: 159 ESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRF 218

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M +  V+ + V+ ++++ AC  L A  +GR  H  I  + + M V LGTA++  Y KCG 
Sbjct: 219 MDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGR 278

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F  + ++N  TW++++   A NG   +++EL+  M Q G+  N +TF+ +L  
Sbjct: 279 LDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFA 338

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G   +G ++F SM R++G+ P  EHY  L+DL GR+G+L  + D+IN MP +P + 
Sbjct: 339 CSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSS 398

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           AW ALL ACRM+ + + G   +  + EL+ ++ G Y+LLSN+Y+ +   D     R+ M+
Sbjct: 399 AWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMR 458

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +G+ K PG S IEV   VHEF A  + HP+   I   +  +  R+K AGYVA+   V+ 
Sbjct: 459 LRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLR 518

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEEEKE  L  HSE++AIAFGLIS   G  + IVKNLRVC+DCH   K ISKV  R+I
Sbjct: 519 DVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKI 578

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD  RFHHF+ G CSC  YW
Sbjct: 579 VVRDAIRFHHFENGACSCGDYW 600



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 138/256 (53%), Gaps = 5/256 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSR 71
           V DG +  D +    +I    KCG +  AR +FD++ E+  D I+WN ++  Y Q G  +
Sbjct: 51  VKDG-YASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGK 109

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           EALHLF  M +  V  N+V++++ + AC  L + ++GR  H      RL+    +GT+LV
Sbjct: 110 EALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLV 169

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           +M+ KC N++ A   F  +  +N+ TW +++   + N   +K++++F  M   GV+P+ V
Sbjct: 170 NMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAV 229

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TF++++  C  +    EGR   D +    GI   +     ++  YG+ GRLD A  + + 
Sbjct: 230 TFLTIIDACAALAAHTEGRMVHDDITAS-GIPMDVALGTAVMHFYGKCGRLDNARAIFDS 288

Query: 252 MPMKPHAGAWGALLNA 267
           +  K +   W A+L A
Sbjct: 289 LG-KKNTVTWSAILAA 303



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 84  DVKLNEVSM-VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
           D +  E+S  V +L  C    AL +G+  H  + ++       +   L++MY KCG + +
Sbjct: 18  DERREEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAE 77

Query: 143 AMDFFWGMKERN--VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           A   F  ++E+N  V +W  +IG    NG G+++L LF  M   GV  N+VT ++ +  C
Sbjct: 78  ARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDAC 137

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHY----GCLVDLYGRAGRLDEALDVINKMPMK 255
             +   EEGR     +     ++  LE        LV+++G+   +D A  V + +P K
Sbjct: 138 ASLPSEEEGR-----IVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRK 191


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/461 (39%), Positives = 279/461 (60%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G +   +++FD ++  DVV    ++S     G +D A ++F  MP ++ ++W  M
Sbjct: 348 LYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVM 407

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY   G S +AL LF+ M+  DVK  + +    ++AC  LGAL  GR  H ++ +   
Sbjct: 408 VSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGF 467

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           + + + G AL+ MY+KCG +N A   F  M   +  +W ++I  L  +G G ++LELF  
Sbjct: 468 EASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQ 527

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   G+ P+ ++F+++L  C   GLV+EG  +F+SM+R++GI P  +HY  L+DL GR+G
Sbjct: 528 MVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSG 587

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           R+ EA D+I  MP +P    W A+L+ CR   + E G  A+ +L  +  ++ G Y+LLSN
Sbjct: 588 RIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSN 647

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            Y+ +  W     VR++M+ +GVKK PGCS IEV  ++H F  GD  HP   E+   L  
Sbjct: 648 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEV 707

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  R++  GYV +T  V++D+E  EKE  L  HSEK+A+ FGL+ L  G  + ++KNLR+
Sbjct: 708 IGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRI 767

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH     +SK   REI+VRD  RFHHFK+G+CSC  YW
Sbjct: 768 CGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 37/291 (12%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +KV D + + D +  T M+    + GDV+ AR +F+E+  +  + WNAM++GY Q G   
Sbjct: 223 RKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCA 282

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM----TVTLG 127
           +A  LF  M    V L+E +  SVLSAC + G    G+  H  I R +        + + 
Sbjct: 283 DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 342

Query: 128 TALVDMYSKCGN-------------------------------MNKAMDFFWGMKERNVY 156
            ALV +YSK G                                ++KA++ F  M  +N  
Sbjct: 343 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 402

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W  ++ G    G  E +L+LF+ M+   V+P + T+   +  C  +G ++ GR+   + 
Sbjct: 403 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ-LHAH 461

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             + G E        L+ +Y + G +++A  V   MP    + +W A+++A
Sbjct: 462 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISA 511



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 146/360 (40%), Gaps = 46/360 (12%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYA 65
           L     +F    +P  V  T++++A A  G +  A   FD +P   RD +  NAM++ +A
Sbjct: 79  LATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFA 138

Query: 66  QCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSAC--THLGALDQGRWAHVYIERNRLKM 122
           +   +  A+ +FH L+    ++ ++ S  +++SA    H  A       H  + ++    
Sbjct: 139 RASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAA 198

Query: 123 TVTLGTALVDMYSKC----------------------------------GNMNKAMDFFW 148
            +++  AL+ +Y KC                                  G++N A   F 
Sbjct: 199 VLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFE 258

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            +  +    W ++I G   +G    + ELF  M    V  +E TF SVL  C   G    
Sbjct: 259 EVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVH 318

Query: 209 GRE-HFDSMRREYGIEP--WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           G+  H   +R +    P   L     LV LY + G++  A  + + M +K    +W  +L
Sbjct: 319 GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTIL 377

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           +    Y ++   + A      +  KN  +++++ + Y      +  + +   M+A+ VK 
Sbjct: 378 SG---YIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKP 434


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/443 (40%), Positives = 286/443 (64%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ ++   +A++    KC ++  A  +F +M  ++ ++W AML GY Q G S EA+  F 
Sbjct: 306 YKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFS 365

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ + ++ ++ ++ SV+S+C +L +L++G   H     + L   +T+  ALV +Y KCG
Sbjct: 366 DMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCG 425

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  +   F  +  ++  TWT+++ G A  G   +++ LF  M   G++P++VTF+ VL 
Sbjct: 426 SIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLS 485

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVE+G + F+SM  E+GI P  +HY C++DL+ RAGR++EA + INKMP  P A
Sbjct: 486 ACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDA 545

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            +W  LL++CR Y N ++G+ A+  L+EL+  N  +YVLLS++YA    W+ V  +R+ M
Sbjct: 546 ISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDM 605

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + KG++K PGCS I+   +VH F A D+++P  ++I   L +++ ++   GYV + N V+
Sbjct: 606 RDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVL 665

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+ + EK   L  HSEK+AIAFGL+ +  G+PIR+VKNLRVC DCH+ TK ISK+ NRE
Sbjct: 666 HDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNRE 725

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD  RFH FK+G CSC  +W
Sbjct: 726 ILVRDTARFHLFKDGTCSCGDFW 748



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 158/267 (59%), Gaps = 2/267 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+++G +   +KVFD + E +VV    +I    +CG V+ ++++F EM ERD I+W +M
Sbjct: 187 MYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSM 246

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G+ Q G  R+A+ +F  M++ ++++++ +  SVL+AC  + AL +G+  H YI R   
Sbjct: 247 ITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY 306

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K  + + +ALVDMY KC N+  A   F  M  +NV +WT+++ G   NG  E++++ FS 
Sbjct: 307 KDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSD 366

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ G+ P++ T  SV+  C  +  +EEG + F +     G+  ++     LV LYG+ G
Sbjct: 367 MQKYGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCG 425

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNA 267
            ++++  + N++  K     W AL++ 
Sbjct: 426 SIEDSHRLFNEISFKDEV-TWTALVSG 451



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 148/298 (49%), Gaps = 37/298 (12%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+LG + Y  KVFD +  P++     ++SA +K G V     +FD MP RD ++WN+++
Sbjct: 54  YAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLI 113

Query: 62  AGYAQCGKSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +GYA CG   +++  ++LM  +D    LN ++  ++L   +  G +  GR  H ++ +  
Sbjct: 114 SGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFG 173

Query: 120 LKMTVTLGTALVDMYSK-------------------------------CGNMNKAMDFFW 148
               V +G+ LVDMYSK                               CG +  +   F+
Sbjct: 174 FMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFF 233

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M+ER+  +WTS+I G   NG    ++++F  MK   ++ ++ TF SVL  C  V  ++E
Sbjct: 234 EMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQE 293

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           G++ H   +R +Y    ++     LVD+Y +   +  A  V  KM  K +  +W A+L
Sbjct: 294 GKQVHAYIIRTDYKDNIFVA--SALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAML 348


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/466 (40%), Positives = 283/466 (60%), Gaps = 9/466 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPD--VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           YA+ G +   +++ D   E D  V+  TA++    K GD++ AR+MF  M  RD +AW A
Sbjct: 342 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTA 401

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY Q G++ EA+ LF  M     + N  ++ +VLS C  L  LD G+  H    R+ 
Sbjct: 402 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 461

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFF----WGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           L+ + ++  A++ MY++ G+   A   F    W    +   TWTS+I  LA +G GE+++
Sbjct: 462 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCW---RKETITWTSMIVALAQHGQGEEAV 518

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LF  M +AGV P+ +T+V VL  C   G V EG+ ++D ++ E+ I P + HY C+VDL
Sbjct: 519 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDL 578

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             RAG   EA + I +MP++P A AWG+LL+ACR++KN E+ ELA+ KL+ ++  N GAY
Sbjct: 579 LARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAY 638

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
             ++N+Y+    W     + +  K K V+K  G S   +  ++H F A D  HP+ + + 
Sbjct: 639 SAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 698

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            M   +   +K AG+V +   V++D+++E KE+ L +HSEK+AIAFGLIS  E   +R++
Sbjct: 699 AMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVM 758

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH   K ISKV +REIIVRD  RFHHF++G CSCK YW
Sbjct: 759 KNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 39/311 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G       VF+ +    V    AM+S     G +DLA  +F+ MP+R  ++WNAM
Sbjct: 208 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 267

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           +AGY Q G   +AL LF  M +H+  +  +E ++ SVLSAC +LG +  G+  H YI R 
Sbjct: 268 IAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326

Query: 119 RLK---------------------------------MTVTLGTALVDMYSKCGNMNKAMD 145
            +                                  + V   TAL++ Y K G+M  A +
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  R+V  WT++I G   NG  +++++LF  M   G  PN  T  +VL  C  +  
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 446

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           ++ G++ H  ++R    +E        ++ +Y R+G    A  + +++  +     W ++
Sbjct: 447 LDYGKQIHCRAIRSL--LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSM 504

Query: 265 LNACRMYKNTE 275
           + A   +   E
Sbjct: 505 IVALAQHGQGE 515



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 132/281 (46%), Gaps = 37/281 (13%)

Query: 6   GCLGYCQKVFDGI--HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           G L   +++FD I     +V    +++S  AK G +  AR +F EMPERD ++W  M+ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
             + G+  EA+     M        + ++ +VLS+C    A   GR  H ++ +  L   
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 124 VTLGTALVDMYSKCGN-------------------------------MNKAMDFFWGMKE 152
           V +  ++++MY KCG+                               M+ A   F  M +
Sbjct: 199 VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 258

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           R++ +W ++I G   NG   K+L+LFS ++ ++ + P+E T  SVL  C  +G V  G++
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 212 -HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            H   +R E      + +   L+  Y ++G ++ A  ++++
Sbjct: 319 VHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQ 357



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           +L+ M++K G +  A   F  M ER+  +WT ++ GL   G   ++++    M   G  P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            + T  +VL  C V      GR+   S   + G+   +     ++++YG+ G  + A  V
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTV 221

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGEL 279
             +MP++    +W A+++      NT +G +
Sbjct: 222 FERMPVRS-VSSWNAMVSL-----NTHLGRM 246


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/446 (43%), Positives = 283/446 (63%), Gaps = 5/446 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E + V  TA+++   K G +D A ++F  +  +D ++W A+++ Y++    REAL LF  
Sbjct: 43  ESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFRE 102

Query: 80  MQIHDV---KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYS 135
           M +H +   K +      +L AC  L A  +GR AH  I+      +   LG  +++MY 
Sbjct: 103 MTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYG 162

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCGN+  A + F GM ER+   WT++I G A +G  E+SL +F  M+Q G +P+ V+ + 
Sbjct: 163 KCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLC 222

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C   GLVE+G + F  + +E+G+EP  +HYGC++DL GR+G L+ A  +I +MP +
Sbjct: 223 VLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQ 282

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
             A  W   L AC+++ +TE G+ A+ K++ELE     AYV LSNIYA +  WD+V  VR
Sbjct: 283 ATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPVP-AAYVSLSNIYAAAGEWDQVDRVR 341

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
             MKA G++K PG S IEV+  VHEF+AGD++HPR  EI  +L  ++R+++ +GYV +T 
Sbjct: 342 SAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTK 401

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V+ ++ EE+KE  LC HSEK+AIAFGL+S   G  +RI+KNLRVC DCH   K +S++ 
Sbjct: 402 LVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIA 461

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REI +RD  RFHHF++G CSC  YW
Sbjct: 462 GREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 55/92 (59%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G    D V    +I+   KCG++  A ++FD M ERD +AW  +++GYA  G S E+L +
Sbjct: 145 GYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLM 204

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           F  MQ    K + VS++ VLS C+H G ++QG
Sbjct: 205 FWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQG 236



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 121/262 (46%), Gaps = 12/262 (4%)

Query: 80  MQIHDVKLNEVSMVSVLSACT-HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ   V  +++  V+ L+AC   L  L  G+  H  +    L+    + TALV+MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF---SLMKQAGVRPNEVTFVS 195
            +++A   F G++ +++ +WT+++   +      ++L+LF   +L    G +P+   F  
Sbjct: 61  CLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 196 VLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +L+ C  +    EGR  H       Y     +   G ++++YG+ G L  A +V + M  
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLG-IINMYGKCGNLRAAHEVFDGMSE 179

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL-----LSNIYAESKNWD 309
           +    AW  +++    + ++E   L   ++ +  +K  G  +L      S+     + WD
Sbjct: 180 RDTV-AWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWD 238

Query: 310 RVINVRQIMKAKGVKKLPGCSV 331
             +++ +    +  +K  GC +
Sbjct: 239 FFLDITKEFGVEPGEKHYGCMI 260


>gi|53793521|dbj|BAD54682.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 381

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/377 (47%), Positives = 252/377 (66%), Gaps = 3/377 (0%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           + V+++++LSAC HLGAL   RWAH Y+       +T  L TAL++MY +CG++  A   
Sbjct: 5   DHVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSL 64

Query: 147 FWGMKER--NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           F     R  +V+TWT +I GLA+NG    +L LF+ MK   ++P+ VT  +VL  C   G
Sbjct: 65  FHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAG 124

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +V+EG+     M  +Y ++P +EHYGC VDL GRAG L+EAL +I  +P K     WGAL
Sbjct: 125 MVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGAL 184

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L ACR ++N EMG++ + +++ L+ ++ GA+V LSN+YA +  WD V  VR  MK   + 
Sbjct: 185 LVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIH 244

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PG SV+E+D  V+EF +GD +HP+ ++I  ML EI + L L G+   T  V +DI+EE
Sbjct: 245 KPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEE 304

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
           +KE  + +HSEK+A+AFGLI+ + G  IRIVKNLR+C DCH V K++S+V++R I+VRDR
Sbjct: 305 DKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDR 364

Query: 445 NRFHHFKEGKCSCKGYW 461
           NRFHHFK G CSC  YW
Sbjct: 365 NRFHHFKSGSCSCLDYW 381



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           TA+++   +CGDV  A  +F   P R  D   W  M+AG A  G S +ALHLF  M+ H+
Sbjct: 46  TALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHN 105

Query: 85  VKLNEVSMVSVLSACTHLGALDQGR 109
           ++ + V++ +VLSACTH G +D+G+
Sbjct: 106 IQPDSVTLTAVLSACTHAGMVDEGK 130


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/466 (40%), Positives = 283/466 (60%), Gaps = 9/466 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPD--VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           YA+ G +   +++ D   E D  V+  TA++    K GD++ AR+MF  M  RD +AW A
Sbjct: 236 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTA 295

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY Q G++ EA+ LF  M     + N  ++ +VLS C  L  LD G+  H    R+ 
Sbjct: 296 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 355

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFF----WGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           L+ + ++  A++ MY++ G+   A   F    W    +   TWTS+I  LA +G GE+++
Sbjct: 356 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCW---RKETITWTSMIVALAQHGQGEEAV 412

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LF  M +AGV P+ +T+V VL  C   G V EG+ ++D ++ E+ I P + HY C+VDL
Sbjct: 413 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDL 472

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             RAG   EA + I +MP++P A AWG+LL+ACR++KN E+ ELA+ KL+ ++  N GAY
Sbjct: 473 LARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAY 532

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
             ++N+Y+    W     + +  K K V+K  G S   +  ++H F A D  HP+ + + 
Sbjct: 533 SAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 592

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            M   +   +K AG+V +   V++D+++E KE+ L +HSEK+AIAFGLIS  E   +R++
Sbjct: 593 AMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVM 652

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH   K ISKV +REIIVRD  RFHHF++G CSCK YW
Sbjct: 653 KNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 39/311 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G       VF+ +    V    AM+S     G +DLA  +F+ MP+R  ++WNAM
Sbjct: 102 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 161

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           +AGY Q G   +AL LF  M +H+  +  +E ++ SVLSAC +LG +  G+  H YI R 
Sbjct: 162 IAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 220

Query: 119 RLK---------------------------------MTVTLGTALVDMYSKCGNMNKAMD 145
            +                                  + V   TAL++ Y K G+M  A +
Sbjct: 221 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 280

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  R+V  WT++I G   NG  +++++LF  M   G  PN  T  +VL  C  +  
Sbjct: 281 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 340

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           ++ G++ H  ++R    +E        ++ +Y R+G    A  + +++  +     W ++
Sbjct: 341 LDYGKQIHCRAIRSL--LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSM 398

Query: 265 LNACRMYKNTE 275
           + A   +   E
Sbjct: 399 IVALAQHGQGE 409



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 35/251 (13%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           AK G +  AR +F EMPERD ++W  M+ G  + G+  EA+     M        + ++ 
Sbjct: 3   AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 62

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN-------------- 139
           +VLS+C    A   GR  H ++ +  L   V +  ++++MY KCG+              
Sbjct: 63  NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVR 122

Query: 140 -----------------MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LM 181
                            M+ A   F  M +R++ +W ++I G   NG   K+L+LFS ++
Sbjct: 123 SVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRML 182

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
            ++ + P+E T  SVL  C  +G V  G++ H   +R E      + +   L+  Y ++G
Sbjct: 183 HESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSG 240

Query: 241 RLDEALDVINK 251
            ++ A  ++++
Sbjct: 241 SVENARRIMDQ 251



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           M++K G +  A   F  M ER+  +WT ++ GL   G   ++++    M   G  P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             +VL  C V      GR+   S   + G+   +     ++++YG+ G  + A  V  +M
Sbjct: 61  LTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGEL 279
           P++    +W A+++      NT +G +
Sbjct: 120 PVRS-VSSWNAMVSL-----NTHLGRM 140


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/386 (47%), Positives = 261/386 (67%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYAE   +    ++F+G+   + V  T++IS   + G VD AR +FD MPERD ++W AM
Sbjct: 167 MYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAM 226

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G+ REAL +F  MQ   V+ +E +MVSV++AC  LGAL+ G WA +Y+ R+ +
Sbjct: 227 IDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGI 286

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           KM   +G ALVDMYSKCG++ +A+  F  M  R+ +TWT+VI GLA+NG GE+++ +F  
Sbjct: 287 KMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYR 346

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +    P+EVTF+ VL  C   GLV++GR+ F SM   YGI P + H+GCL+DL GRAG
Sbjct: 347 MLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAG 406

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +L EAL+ I  MPM+P++  WG LL ACR++ N+E+G+LA+  L+EL+T+N   Y+LLSN
Sbjct: 407 KLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSN 466

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA+S  W+ V  +RQ++  KG+KK PGCS+IE++  +HEF AGD +HP   EI   L +
Sbjct: 467 LYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDK 526

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEK 386
           +   LK AGYV +   +   +  EEK
Sbjct: 527 VLTDLKDAGYVPDLTEIFVQVTREEK 552



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 35/263 (13%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           ++++   A  GD  +AR + D  P R    P+ WNA+++G+ +  + R +   F  M   
Sbjct: 58  SSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRT 117

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            V    V+ ++VLSAC     +  G   H  +  + +   + +G AL+DMY++C  M+ A
Sbjct: 118 GVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAA 177

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNG-----------------------------AGE-- 172
            + F GM+ RN  +WTSVI G    G                             AG+  
Sbjct: 178 WELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFR 237

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           ++LE+F  M+ + VR +E T VSV+  C  +G +E G      M R +GI+        L
Sbjct: 238 EALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSR-HGIKMDTFVGNAL 296

Query: 233 VDLYGRAGRLDEALDVINKMPMK 255
           VD+Y + G + +AL V  +M ++
Sbjct: 297 VDMYSKCGSIQQALGVFKEMYIR 319


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/466 (40%), Positives = 283/466 (60%), Gaps = 9/466 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPD--VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           YA+ G +   +++ D   E D  V+  TA++    K GD++ AR+MF  M  RD +AW A
Sbjct: 342 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTA 401

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY Q G++ EA+ LF  M     + N  ++ +VLS C  L  LD G+  H    R+ 
Sbjct: 402 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 461

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFF----WGMKERNVYTWTSVIGGLAMNGAGEKSL 175
           L+ + ++  A++ MY++ G+   A   F    W    +   TWTS+I  LA +G GE+++
Sbjct: 462 LERSSSVSNAIITMYARSGSFPWARRMFDQVCW---RKETITWTSMIVALAQHGQGEEAV 518

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LF  M +AGV P+ +T+V VL  C   G V EG+ ++D ++ E+ I P + HY C+VDL
Sbjct: 519 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDL 578

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             RAG   EA + I +MP++P A AWG+LL+ACR++KN E+ ELA+ KL+ ++  N GAY
Sbjct: 579 LARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAY 638

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
             ++N+Y+    W     + +  K K V+K  G S   +  ++H F A D  HP+ + + 
Sbjct: 639 SAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 698

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            M   +   +K AG+V +   V++D+++E KE+ L +HSEK+AIAFGLIS  E   +R++
Sbjct: 699 AMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVM 758

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH   K ISKV +REIIVRD  RFHHF++G CSCK YW
Sbjct: 759 KNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 142/311 (45%), Gaps = 39/311 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G       VF+ +    V    AM+S     G +DLA  +F+ MP R  ++WNAM
Sbjct: 208 MYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAM 267

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           +AGY Q G   +AL LF  M +H+  +  +E ++ SVLSAC +LG +  G+  H YI R 
Sbjct: 268 IAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326

Query: 119 RLK---------------------------------MTVTLGTALVDMYSKCGNMNKAMD 145
            +                                  + V   TAL++ Y K G+M  A +
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  M  R+V  WT++I G   NG  +++++LF  M   G  PN  T  +VL  C  +  
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 446

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           ++ G++ H  ++R    +E        ++ +Y R+G    A  + +++  +     W ++
Sbjct: 447 LDYGKQIHCRAIRSL--LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSM 504

Query: 265 LNACRMYKNTE 275
           + A   +   E
Sbjct: 505 IVALAQHGQGE 515



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 131/281 (46%), Gaps = 37/281 (13%)

Query: 6   GCLGYCQKVFDGI--HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           G L   +++FD I     +V    +++S  AK G +  AR +F EMPERD ++W  M+ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
             + G+  EA+     M        + ++ +VLS+C    A   GR  H ++ +  L   
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 124 VTLGTALVDMYSKCGN-------------------------------MNKAMDFFWGMKE 152
           V +  ++++MY KCG+                               M+ A   F  M  
Sbjct: 199 VPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPG 258

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           R++ +W ++I G   NG   K+L+LFS ++ ++ + P+E T  SVL  C  +G V  G++
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 212 -HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            H   +R E      + +   L+  Y ++G ++ A  ++++
Sbjct: 319 VHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQ 357



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           +L+ M++K G +  A   F  M ER+  +WT ++ GL   G   ++++    M   G  P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            + T  +VL  C V      GR+   S   + G+   +     ++++YG+ G  + A  V
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTV 221

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGEL 279
             +MP++    +W A+++      NT +G +
Sbjct: 222 FERMPVRS-VSSWNAMVSL-----NTHLGRM 246


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/466 (41%), Positives = 301/466 (64%), Gaps = 12/466 (2%)

Query: 7   CLGYCQKVFDG--IH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA 56
           C G+     DG  IH        + +V   ++++   A+CG++  +R +FDE+  ++ ++
Sbjct: 204 CCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVS 263

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WNA+++G+A+ G+  EAL LF  MQ       E +  ++L + +  G+L+QG+W H ++ 
Sbjct: 264 WNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMM 323

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           ++  K+   +G  L+ MY+K GN+  A   F  + + +V +  S++ G A +G G++++E
Sbjct: 324 KSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVE 383

Query: 177 LFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           LF  +M    + PN++TF+SVL  C   GL++EG  +F+ M++ YG+EP L HY  +VDL
Sbjct: 384 LFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDL 442

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
           +GRAG LD+A   I +MP++P+A  WGALL A +M+KNTEMG  A++K++EL+    GA+
Sbjct: 443 FGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAH 502

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
            LLSNIYA +  W  V  VR+ MK  G+KK P CS +E++  VH F A D +HP+ N++ 
Sbjct: 503 TLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVY 562

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
            M   +++++K  GYV +T+ V   ++++EKE  L  HSEK+A+AF L++ K G  IRI+
Sbjct: 563 EMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIM 622

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KN+RVC DCH   K +S V  REIIVRD NRFHHF++G CSC+ YW
Sbjct: 623 KNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 132/235 (56%), Gaps = 6/235 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG---KSREALHLFH 78
           D+V + +++   AKCG +++AR++FDEM  +D + W +M+ GY+Q G    +  AL LF 
Sbjct: 125 DLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFL 184

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    ++ NE ++ S++  C  LG+   G+  H    +   +  V +G++LVDMY++CG
Sbjct: 185 EMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCG 244

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + ++   F  ++ +N  +W ++I G A  G GE++L LF  M++ G    E T+ ++L 
Sbjct: 245 ELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLC 304

Query: 199 GCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
                G +E+G+  H   M+    +  ++ +   L+ +Y ++G + +A  V +++
Sbjct: 305 SSSTTGSLEQGKWLHAHMMKSGKKLVGYVGN--TLLHMYAKSGNICDAKKVFDRL 357



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           S   LH+  L+    ++ +      +L  CT LG L QG+  H ++  ++ +  + +  +
Sbjct: 72  STTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNS 131

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG---AGEKSLELFSLMKQAGV 186
           ++ MY+KCG++  A   F  M  ++V TWTS+I G + +G   +   +L LF  M + G+
Sbjct: 132 ILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGL 191

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           RPNE    S+++ C  +G   +G++       +YG +  +     LVD+Y R G L E+ 
Sbjct: 192 RPNEFALSSLVKCCGFLGSCVDGKQ-IHGCCWKYGFQENVFVGSSLVDMYARCGELRESR 250

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
            V +++  K    +W AL++    +     GE A    V+++ +  GA
Sbjct: 251 LVFDELESKNEV-SWNALISG---FARKGEGEEALGLFVKMQREGFGA 294



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 40/186 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + DVV       +C                        N+M
Sbjct: 340 MYAKSGNICDAKKVFDRLVKVDVV-------SC------------------------NSM 368

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L GYAQ G  +EA+ LF  M +  +++ N+++ +SVL+AC+H G LD+G +    +++  
Sbjct: 369 LIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYG 428

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG-------AG 171
           L+  ++  T +VD++ + G +++A  F   M  E N   W +++G   M+        A 
Sbjct: 429 LEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAA 488

Query: 172 EKSLEL 177
           +K LEL
Sbjct: 489 QKVLEL 494


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 280/448 (62%), Gaps = 13/448 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T ++ + AKCGD+  ARK+FDEM  RD   WN++LAG AQ  +   AL LFH + 
Sbjct: 138 DVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLA 197

Query: 82  IHDVKL------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
               +L      NEV++V+ LSAC  +G L  G + H + +R  L   V +  +L+DMYS
Sbjct: 198 NSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYS 257

Query: 136 KCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           KCG++++A+D F  +K  +R + ++ + I   +M+G G  +L LF  M    + P+ VT+
Sbjct: 258 KCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTY 316

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++VL GC   GLV++G   F+SMR    + P ++HYG +VDL GRAGRL EA D +  MP
Sbjct: 317 LAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMP 372

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
                  W  LL A +M+   E+ ELA+ KL EL +   G YVLLSN+YA    W  V  
Sbjct: 373 FPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGR 432

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR  M++  V+K+PG S  E+D  +H+F  GD+ HPR+ EI   L +I  R+   GY   
Sbjct: 433 VRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPE 492

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           T+ V++DI EEEK+  LC HSEK+AIAFGLI+   G  +R++KNLR+C DCH V K+ISK
Sbjct: 493 TSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISK 552

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            + R I++RDR RFH F++G+CSC+ YW
Sbjct: 553 AYGRVIVIRDRARFHRFEDGQCSCRDYW 580



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R  +   V L T L+D Y+KCG++  A   F  M  R+V TW S++ GLA     
Sbjct: 127 HALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEP 186

Query: 172 EKSLELFSLMKQAGV------RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
             +L LF  +  +         PNEVT V+ L  C  +GL+++G  +     + +G++  
Sbjct: 187 NLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGM-YVHEFAKRFGLDRN 245

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
           +     L+D+Y + G L  ALDV + + P      ++ A + A  M+ +   G  A R  
Sbjct: 246 VRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGH---GGDALRLF 302

Query: 285 VELETK 290
            E+ T+
Sbjct: 303 DEMPTR 308


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/440 (41%), Positives = 276/440 (62%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    A++   AKCG+++ + K+F+E+P+R+ + WN ++ GY Q G    A++LF  M 
Sbjct: 372 NVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHML 431

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            HD++  EV+  SVL A   L AL+ G   H    +        +  +L+DMY+KCG +N
Sbjct: 432 EHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRIN 491

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M +R+  +W ++I G +M+G   ++L LF +M+    +PN++TFV VL  C 
Sbjct: 492 DARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACS 551

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL+ +G+ HF+SM ++Y I+P +EHY C+V L GR GR DEA+ +I ++  +P    W
Sbjct: 552 NAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVW 611

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL AC ++K  ++G + ++ ++E+E  +   +VLLSN+YA +  WD V  VR+ M+ K
Sbjct: 612 RALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKK 671

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            V+K PG S +E    VH F  GD +HP    I  ML  ++++ + AGYV + N V+ D+
Sbjct: 672 KVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDV 731

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +++EKE  L  HSE++A+A+GLI       IRI+KNLR+C DCH V K+ISKV  REI++
Sbjct: 732 QDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVI 791

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF+ G CSC  YW
Sbjct: 792 RDINRFHHFRHGVCSCGDYW 811



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 143/256 (55%), Gaps = 4/256 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G ++ D+    A++   AK G++  A+++F+EMP+ D I W+ M+A YAQ  +S+EAL L
Sbjct: 266 GCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDL 325

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M+   V  N  +  SVL AC    +LD G+  H  + +  L   V +  A++D+Y+K
Sbjct: 326 FLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAK 385

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  +M  F  + +RN  TW ++I G    G GE+++ LF+ M +  ++P EVT+ SV
Sbjct: 386 CGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSV 445

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           LR    +  +E G + H  +++  Y  +  +     L+D+Y + GR+++A    +KM  +
Sbjct: 446 LRASASLAALEPGLQIHSLTIKTMYNKDTVVA--NSLIDMYAKCGRINDARLTFDKMNKR 503

Query: 256 PHAGAWGALLNACRMY 271
               +W A++    M+
Sbjct: 504 DEV-SWNAMICGYSMH 518



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 125/235 (53%), Gaps = 1/235 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  D    TA+I A +  G+VD+AR +FD++  +D ++W  M+A YA+     E+L LF+
Sbjct: 167 HHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFN 226

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+I   K N  ++   L +C  L A + G+  H    +      + +G AL+++Y+K G
Sbjct: 227 QMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSG 286

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A   F  M + ++  W+ +I   A +   +++L+LF  M+Q  V PN  TF SVL+
Sbjct: 287 EIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQ 346

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            C     ++ G++   S   ++G+   +     ++D+Y + G ++ ++ +  ++P
Sbjct: 347 ACASSVSLDLGKQ-IHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP 400



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 87/149 (58%), Gaps = 2/149 (1%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           ++  D V   ++I   AKCG ++ AR  FD+M +RD ++WNAM+ GY+  G S EAL+LF
Sbjct: 469 MYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLF 528

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSK 136
            +MQ  D K N+++ V VLSAC++ G L +G+     + ++  +K  +   T +V +  +
Sbjct: 529 DMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGR 588

Query: 137 CGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            G  ++AM     +  + +V  W +++G 
Sbjct: 589 LGRFDEAMKLIGEIAYQPSVMVWRALLGA 617



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 112/233 (48%), Gaps = 3/233 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+  Q  +++   +   +  A K+FDEMP+ + I++  +  GY++  +  +ALH    + 
Sbjct: 69  DLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIF 128

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               ++N     ++L     +         H  + +        +GTAL+D YS  GN++
Sbjct: 129 KEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVD 188

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  +++ +WT ++   A N   E+SL+LF+ M+  G +PN  T    L+ C 
Sbjct: 189 VARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCL 248

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            +     G+  H  +++  Y  + ++     L++LY ++G + +A  +  +MP
Sbjct: 249 GLEAFNVGKSVHGCALKGCYDHDLFVG--IALLELYAKSGEIIDAQRLFEEMP 299


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/443 (41%), Positives = 281/443 (63%), Gaps = 5/443 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +++  T+++    K G+V  AR++F+++ +RD +AW AM+ GY Q G   +AL LF LM 
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + N  ++ ++LS  + L  L+ G+  H    +     T ++  AL+ MY+K GN+N
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 142 KA---MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            A    D   G KE  + +WTS+I  LA +G G++++ LF  M   G++P+ +T+V VL 
Sbjct: 462 VAKRVFDLPNGKKE--IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  VGLVE+GR++++ M   + IEP L HY C++DLYGRAG L EA   I  MP++P  
Sbjct: 520 ACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDN 579

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            AWG+LL +C+++KN ++ ++A+ +L+ ++  N GAY+ L+N+Y+    W+     R++M
Sbjct: 580 IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLM 639

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K +GV+K  G S I +  EVH F   D  HP+ +EI  ++ EI   +K  G++ +T  V+
Sbjct: 640 KDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVL 699

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+EEE KE  L  HSEK+AIAFGL++  E   +RI+KNLRVC DCH   K ISK+  RE
Sbjct: 700 HDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGRE 759

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD  RFHHFK+G CSC+ YW
Sbjct: 760 IIVRDATRFHHFKDGSCSCRDYW 782



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 148/302 (49%), Gaps = 37/302 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G     + VFD +   ++    A+IS   + G  +LA   F++MP+RD ++WN+M
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSM 245

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY+Q G + EAL +F  ++    +K +  ++ S+LSAC +L  L+ G+  H YI R  
Sbjct: 246 ISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 120 LKMTVTLGTALVDM---------------------------------YSKCGNMNKAMDF 146
            + +  +G AL+ M                                 Y+K GN+  A + 
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +++R+V  WT++I G   NG    +LELF LM   G  PN  T  ++L     + ++
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           E G++ H  +++      P + +   L+ +Y + G ++ A  V +    K    +W +++
Sbjct: 426 EHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMI 483

Query: 266 NA 267
            A
Sbjct: 484 MA 485



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 35/278 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            YA+ G L +   VFD +          +IS  AK G+ +++R++  EMP+ DP++W A+
Sbjct: 54  FYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAI 113

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G    A+ +F  M    V  ++ ++ +VLS+C     LD GR  H ++ +  L
Sbjct: 114 IVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGL 173

Query: 121 KMTVTLGTALVDMYSKCGN-------------------------------MNKAMDFFWG 149
              V + T+L++MY+KCG+                                  A   F  
Sbjct: 174 GSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M +R++ +W S+I G +  G   ++L +FS ++ +  ++P+  T  S+L  C  +  +  
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           G++ H   +R E      + +   L+ +Y ++G ++ A
Sbjct: 294 GKQIHAYILRAETETSGAVGN--ALISMYAKSGGVEIA 329



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 116/283 (40%), Gaps = 48/283 (16%)

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           GR  H  I +  L + V L   L+  Y+K G++  A   F  M  ++ ++W ++I G A 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 168 NGAGEKSLEL-------------------------------FSLMKQAGVRPNEVTFVSV 196
            G  E S  L                               F+ M    V P++ T  +V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C     ++ GR+   S   + G+   +     L+++Y + G    A  V ++M +K 
Sbjct: 149 LSSCAANQTLDIGRK-IHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK- 206

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY-VLLSNIYAESKNWDRVINVR 315
           +   W AL++   +Y  +   ELA+ +  ++  ++  ++  ++S    +  N + ++   
Sbjct: 207 NISTWNALIS---LYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFS 263

Query: 316 QIMKAKGVKK--------LPGCSVIE---VDREVHEFFAGDET 347
           +++    +K         L  C+ +E   + +++H +    ET
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAET 306


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/443 (41%), Positives = 281/443 (63%), Gaps = 5/443 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +++  T+++    K G+V  AR++F+++ +RD +AW AM+ GY Q G   +AL LF LM 
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + N  ++ ++LS  + L  L+ G+  H    +     T ++  AL+ MY+K GN+N
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 142 KA---MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            A    D   G KE  + +WTS+I  LA +G G++++ LF  M   G++P+ +T+V VL 
Sbjct: 462 VAKRVFDLPNGKKE--IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  VGLVE+GR++++ M   + IEP L HY C++DLYGRAG L EA   I  MP++P  
Sbjct: 520 ACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDN 579

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            AWG+LL +C+++KN ++ ++A+ +L+ ++  N GAY+ L+N+Y+    W+     R++M
Sbjct: 580 IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLM 639

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K +GV+K  G S I +  EVH F   D  HP+ +EI  ++ EI   +K  G++ +T  V+
Sbjct: 640 KDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVL 699

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+EEE KE  L  HSEK+AIAFGL++  E   +RI+KNLRVC DCH   K ISK+  RE
Sbjct: 700 HDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGRE 759

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD  RFHHFK+G CSC+ YW
Sbjct: 760 IIVRDATRFHHFKDGSCSCRDYW 782



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 148/302 (49%), Gaps = 37/302 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G     + VFD +   ++    A+IS   + G  +LA   F++MP+RD ++WN+M
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSM 245

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY+Q G + EAL +F  ++    +K +  ++ S+LSAC +L  L+ G+  H YI R  
Sbjct: 246 ISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 120 LKMTVTLGTALVDM---------------------------------YSKCGNMNKAMDF 146
            + +  +G AL+ M                                 Y+K GN+  A + 
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  +++R+V  WT++I G   NG    +LELF LM   G  PN  T  ++L     + ++
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           E G++ H  +++      P + +   L+ +Y + G ++ A  V +    K    +W +++
Sbjct: 426 EHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMI 483

Query: 266 NA 267
            A
Sbjct: 484 MA 485



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 35/278 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            YA+ G L +   VFD +          +IS  AK G+ +++R++  EMP+ DP++W A+
Sbjct: 54  FYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAI 113

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q G    A+ +F  M    V  ++ ++ +VLS+C     LD GR  H ++ +  L
Sbjct: 114 IVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGL 173

Query: 121 KMTVTLGTALVDMYSKCGN-------------------------------MNKAMDFFWG 149
              V + T+L++MY+KCG+                                  A   F  
Sbjct: 174 GSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M +R++ +W S+I G +  G   ++L +FS ++ +  ++P+  T  S+L  C  +  +  
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           G++ H   +R E      + +   L+ +Y ++G ++ A
Sbjct: 294 GKQIHAYILRAETETSGAVGN--ALISMYAKSGGVEIA 329



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 115/283 (40%), Gaps = 48/283 (16%)

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           GR  H  I +  L + V L   L+  Y+K G++  A   F  M  ++ ++W ++I G A 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 168 NGAGEKSLEL-------------------------------FSLMKQAGVRPNEVTFVSV 196
            G  E S  L                               F+ M    V P++ T  +V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C     ++ GR+   S   + G+   +     L+++Y + G    A  V ++M +K 
Sbjct: 149 LSSCAANQTLDIGRK-IHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK- 206

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY-VLLSNIYAESKNWDRVINVR 315
           +   W AL++   +Y  +   ELA+ +  ++  ++  ++  ++S    +  N + +    
Sbjct: 207 NISTWNALIS---LYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFS 263

Query: 316 QIMKAKGVKK--------LPGCSVIE---VDREVHEFFAGDET 347
           +++    +K         L  C+ +E   + +++H +    ET
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAET 306


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/446 (44%), Positives = 279/446 (62%), Gaps = 4/446 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLF 77
           ++ DV     +I    KCGD+  A  +F+ +  R + ++W +MLA   Q  +   A  +F
Sbjct: 240 YKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF 299

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            L    +V+  +  + SVLSAC  LG L+ GR  H    +  ++  + +G+ALVDMY KC
Sbjct: 300 -LQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKC 358

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK--QAGVRPNEVTFVS 195
           G++  A   F  + ERN+ TW ++IGG A  G  + +L LF  M     G+RP+ VT +S
Sbjct: 359 GSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLIS 418

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C  VG VE G + F+SMR  YGIEP  EH+ C+VDL GR+G +D A + I  M ++
Sbjct: 419 ILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQ 478

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P    WGALL ACRM+  TE+G++A+ KL EL+  + G +V+LSN+ A +  W+    VR
Sbjct: 479 PTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVR 538

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           + MK  G+KK  G S I V   +H F A D +H R +EI+ MLG++   +K AGYV +TN
Sbjct: 539 KEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTN 598

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
             ++D+E+EEK   +  HSEK+A+AFGLI+L +GVPIRI KNLR+C DCH   K IS++ 
Sbjct: 599 LSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIV 658

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REIIVRD +RFH FK+G CSCK YW
Sbjct: 659 GREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 143/299 (47%), Gaps = 19/299 (6%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G    VF G    D+ C+T         GD   A  MFDEMP+R+   WNA ++   Q  
Sbjct: 138 GMIYDVFVGCSCFDMYCKTGFR------GD---ACNMFDEMPQRNLATWNAYISNAVQDR 188

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           +S +A+  F        + N ++  + L+AC  +  L+ GR  H +I R   K  V++  
Sbjct: 189 RSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVAN 248

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            L+D Y KCG++  A   F  +  R NV +W S++  L  N   E++  +F L  +  V 
Sbjct: 249 GLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF-LQARKEVE 307

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P +    SVL  C  +G +E GR    ++  +  +E  +     LVD+YG+ G ++ A  
Sbjct: 308 PTDFMISSVLSACAELGGLELGRS-VHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQ 366

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG---AYVLLSNIYA 303
           V +++P + +   W A++     Y +    ++A R   E+   +HG   +YV L +I +
Sbjct: 367 VFSELPER-NLVTWNAMIGG---YAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILS 421



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 8/240 (3%)

Query: 52  RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111
           R  + W ++++G     +   AL  F  M+  +V+ N+ +   V  A   +     G+  
Sbjct: 71  RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQI 130

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H    +  +   V +G +  DMY K G    A + F  M +RN+ TW + I     +   
Sbjct: 131 HGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRS 190

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
             ++  F         PN +TF + L  C  +  +  GR+    + R  G +  +     
Sbjct: 191 LDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVR-CGYKEDVSVANG 249

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE-----MGELASRKLVE 286
           L+D YG+ G +  A  V N++  + +  +W ++L A  + +N E     M  L +RK VE
Sbjct: 250 LIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAA--LVQNHEEERACMVFLQARKEVE 307



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 7/188 (3%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK-MTVTLGTALVDMYSKCG 138
           M IH   L    + S +S  TH   L  GR  H +I R  +  +   L   LV+MYSK  
Sbjct: 1   MNIHPQNLLGSLLESAVS--THCSIL--GRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLD 56

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +N A         R V TWTS+I G   N     +L  F+ M++  V+PN+ TF  V +
Sbjct: 57  LLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFK 116

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
               V +   G++      +   I        C  D+Y + G   +A ++ ++MP +  A
Sbjct: 117 ASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCF-DMYCKTGFRGDACNMFDEMPQRNLA 175

Query: 259 GAWGALLN 266
             W A ++
Sbjct: 176 -TWNAYIS 182



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 44/189 (23%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   ++VF  + E ++V   AMI   A  GD+D+A ++F+EM           
Sbjct: 354 MYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMT---------- 403

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                              +  H ++ + V+++S+LS C+ +GA+++G       E  RL
Sbjct: 404 -------------------LGSHGIRPSYVTLISILSVCSRVGAVERGIQ---IFESMRL 441

Query: 121 KMTVTLG----TALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG------ 169
              +  G      +VD+  + G +++A +F   M  +  +  W +++G   M+G      
Sbjct: 442 NYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGK 501

Query: 170 -AGEKSLEL 177
            A EK  EL
Sbjct: 502 IAAEKLFEL 510


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/472 (42%), Positives = 297/472 (62%), Gaps = 12/472 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G +G  +K+F+GI    VV  +  +    K   V+  R +FDEMPER+ +AW  M
Sbjct: 167 VYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVM 226

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVY-IERN 118
           + GY   G ++EA  L   M      +L+ V++ SVLSAC+  G +  GRW H Y ++  
Sbjct: 227 IVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEM 286

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L   V +GT+LVDMY+KCG +N A+  F  M +RNV  W +++GGLAM+G G+ ++++F
Sbjct: 287 GLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMF 346

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
             M +  V+P+ VTF+++L  C   GLVE+G ++F  +   Y I+P +EHY C+V L GR
Sbjct: 347 PSMVEE-VKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGR 405

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
           AGRL+EA  ++  M + P+    G+L+ +C  +   ++GE   R L+E++  N   +++L
Sbjct: 406 AGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVL 465

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SN+YA S   ++  ++RQ++K +G+KK+PG S I VD ++H+F AGD++H R +EI + L
Sbjct: 466 SNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKL 525

Query: 359 GEISRRLKLAGYVANTN-PVMY------DIEE--EEKEDTLCKHSEKVAIAFGLISLKEG 409
            E+  RL+ AGYV NT+  V++      D  E  EE E  L  HSEK+A+ FGL+S   G
Sbjct: 526 DEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSG 585

Query: 410 VPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            P+ I KNLR+C DCH   K+ SKV+ REI+VRDR RFH FK G CSC  YW
Sbjct: 586 SPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 147/347 (42%), Gaps = 51/347 (14%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALH 75
           I  P+   + A++     C     ARK+FDE+P+  +D + + A++     C    E+L 
Sbjct: 52  ISSPNHFLRNALLHLYGSCSLPSHARKLFDEIPQSHKDSVDYTALI---RHC-PPFESLK 107

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ--GRWAHVYIERNRLKMTVTLGTALVDM 133
           LF  M+  D+ L+ V MV  L+AC  LG  D   G   HV + +        +  AL+++
Sbjct: 108 LFIQMRQFDLPLDGVVMVCALNACARLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNV 167

Query: 134 YSKCGNMNKAMDFFWG-------------------------------MKERNVYTWTSVI 162
           Y K G + +A   F G                               M ERN   WT +I
Sbjct: 168 YVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMI 227

Query: 163 GGLAMNGAGEKSLELFSLMKQ----AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
            G   NG  +   E F L+K+     G R + VT  SVL  C   G V  GR       +
Sbjct: 228 VGYVGNGFTK---EAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVK 284

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           E G++  +     LVD+Y + GR++ AL V   M +K +  AW A+L    M+   ++  
Sbjct: 285 EMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSM-LKRNVVAWNAMLGGLAMHGMGKIAV 343

Query: 279 LASRKLVELETKNHGAYVLLSNIYAES----KNWDRVINVRQIMKAK 321
                +VE    +   ++ L +  + S    K WD   ++  + + K
Sbjct: 344 DMFPSMVEEVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIK 390


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/446 (43%), Positives = 283/446 (63%), Gaps = 5/446 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E + V  TA+++   K G +D A ++F  +  +D ++W A+++ Y++    REAL LF  
Sbjct: 43  ESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFRE 102

Query: 80  MQIHDV---KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYS 135
           M +H +   K +      +L AC  L A  +GR AH  I+      +   LG  +++MY 
Sbjct: 103 MTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYG 162

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCGN+  A + F GM ER+   WT++I G A +G  E+SL +F  M+Q G +P+ V+ + 
Sbjct: 163 KCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLC 222

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           VL  C   GLVE+G + F  + +E+G+EP  +HYGC++DL GR+G L+ A  +I +MP +
Sbjct: 223 VLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQ 282

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
             A  W   L AC+++ +TE G+ A+ K++ELE     AYV LSNIYA +  WD+V  VR
Sbjct: 283 ATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPVP-AAYVSLSNIYAAAGEWDQVDRVR 341

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
             MKA G++K PG S IEV+  VHEF+AGD++HPR  EI  +L  ++R+++ +GYV +T 
Sbjct: 342 SAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTK 401

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V+ ++ EE+KE  LC HSEK+AIAFGL+S   G  +RI+KNLRVC DCH   K +S++ 
Sbjct: 402 LVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIA 461

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REI +RD  RFHHF++G CSC  YW
Sbjct: 462 GREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 55/92 (59%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G    D V    +I+   KCG++  A ++FD M ERD +AW  +++GYA  G S E+L +
Sbjct: 145 GYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLM 204

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           F  MQ    K + VS++ VLS C+H G ++QG
Sbjct: 205 FWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQG 236



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 12/262 (4%)

Query: 80  MQIHDVKLNEVSMVSVLSACT-HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ   V  +++  V+ L+AC   L  L  G+  H  +    L+    + TALV+MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF---SLMKQAGVRPNEVTFVS 195
            +++A   F G+  +++ +WT+++   +      ++L+LF   +L    G +P+   F  
Sbjct: 61  CLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 196 VLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +L+ C  +    EGR  H       Y     +   G ++++YG+ G L  A +V + M  
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLG-IINMYGKCGNLRAAHEVFDGMSE 179

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL-----LSNIYAESKNWD 309
           +    AW  +++    + ++E   L   ++ +  +K  G  +L      S+     + WD
Sbjct: 180 RDTV-AWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWD 238

Query: 310 RVINVRQIMKAKGVKKLPGCSV 331
             +++ +    +  +K  GC +
Sbjct: 239 FFLDITKEFGVEPGEKHYGCMI 260


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/465 (41%), Positives = 285/465 (61%), Gaps = 4/465 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIA 56
           +YA    +   + VFD +   DVV    +++A     + D    +F +M     E D   
Sbjct: 277 LYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEAT 336

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WNA++ G  + G++ +A+ +   MQ    K N++++ S L AC+ L +L  G+  H Y+ 
Sbjct: 337 WNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVF 396

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           R+ L   +T  TALV MY+KCG++N + + F  +  ++V  W ++I   AM+G G + L 
Sbjct: 397 RHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLL 456

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M Q+G++PN VTF  VL GC    LVEEG + F+SM R++ +EP   HY C+VD++
Sbjct: 457 LFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVF 516

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
            RAGRL EA + I +MPM+P A AWGALL ACR+YKN E+ ++++ KL E+E  N G YV
Sbjct: 517 SRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYV 576

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
            L NI   +K W      R +MK +G+ K PGCS ++V   VH F  GD+ +   ++I  
Sbjct: 577 SLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYN 636

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
            L E+  ++K AGY  +T+ V+ DI++EEK ++LC HSEK+A+AFG+++L     IR+ K
Sbjct: 637 FLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFK 696

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           NLR+C DCH+  K +SKV    IIVRD  RFHHF+ G CSC+  W
Sbjct: 697 NLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 135/287 (47%), Gaps = 37/287 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A+I A  KC  V+ AR++FD++  +D ++W +M + Y  CG  R  L +F  M 
Sbjct: 166 DAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMG 225

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            + VK N V++ S+L AC+ L  L  GR  H +  R+ +   V + +ALV +Y++C ++ 
Sbjct: 226 WNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVK 285

Query: 142 KAMDFFWGMKERNVY-----------------------------------TWTSVIGGLA 166
           +A   F  M  R+V                                    TW +VIGG  
Sbjct: 286 QARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCM 345

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG  EK++E+   M+  G +PN++T  S L  C ++  +  G+E    + R + I   L
Sbjct: 346 ENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGD-L 404

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
                LV +Y + G L+ + +V + M  +    AW  ++ A  M+ N
Sbjct: 405 TTMTALVYMYAKCGDLNLSRNVFD-MICRKDVVAWNTMIIANAMHGN 450



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 141/328 (42%), Gaps = 24/328 (7%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++ A    GD   A+++FD +P+ DP   + +++ +   G   EA+ L+  ++   +K +
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
               ++V  AC   G   + +  H    R  +     LG AL+  Y KC  +  A   F 
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            +  ++V +WTS+       G     L +F  M   GV+PN VT  S+L  C  +  ++ 
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 209 GREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           GR       R   IE     + C  LV LY R   + +A  V + MP +    +W  +L 
Sbjct: 252 GRAIHGFAVRHGMIE---NVFVCSALVSLYARCLSVKQARLVFDLMPHR-DVVSWNGVLT 307

Query: 267 AC---RMY-KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           A    R Y K   +    S K VE +     A +       E+   ++ + + + M+  G
Sbjct: 308 AYFTNREYDKGLALFSQMSSKGVEADEATWNAVI---GGCMENGQTEKAVEMLRKMQNLG 364

Query: 323 VKK--------LPGCSVIE---VDREVH 339
            K         LP CS++E   + +EVH
Sbjct: 365 FKPNQITISSFLPACSILESLRMGKEVH 392



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           LG  L+      G+  +A   F  + + +  T +++I      G   +++ L++ ++  G
Sbjct: 68  LGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARG 127

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           ++P+   F++V + C   G     +E H D++R     + +L +   L+  YG+   ++ 
Sbjct: 128 IKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGN--ALIHAYGKCKCVEG 185

Query: 245 ALDVINKMPMK 255
           A  V + + +K
Sbjct: 186 ARRVFDDLVVK 196


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/444 (41%), Positives = 272/444 (61%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           +   + + + A+++   +CG ++ ARK+FD M   D  +W +M+    +  +  EAL LF
Sbjct: 119 LKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELF 178

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           H M +  +    V++ SVL+AC   GAL  G+  H  ++ +    +V   TAL+DMY+KC
Sbjct: 179 HRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKC 238

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  +   F  M+ RN  +WT++I  LA +G G+++LELF  M   G+  +  TF+ VL
Sbjct: 239 GSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVL 298

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
           R C   GL++E  E F SM  +Y I P   HY   +D  GRAGRL +A ++I+ MP  P 
Sbjct: 299 RACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPE 358

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              W  LLNACR++   E     +  L +L  ++  AY LL N+YA +  +   + VR+ 
Sbjct: 359 TLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKG 418

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M  +G+KK+PG S IEV  +VHEF AGD  HP  +EI + L ++  R++ AGYV NT  V
Sbjct: 419 MTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDV 478

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++ + EEEKE  +  HSEK+AIAFGLI+   G P+ IVKNLRVC DCH  TK+I+K+  R
Sbjct: 479 LHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRR 538

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
            I+VRD +RFHHF++G+CSCK YW
Sbjct: 539 RIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 133/254 (52%), Gaps = 6/254 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G H    + Q  ++S  AKCG +D AR +F+ + ER  ++W+AM+  YA  G+ +EAL L
Sbjct: 15  GFHRA-TIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLL 73

Query: 77  FHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMT-VTLGTALVDM 133
           FH M+    V+ N ++   V +AC  +  L+QGR  H + +    LK +   L  AL++M
Sbjct: 74  FHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNM 133

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y +CG++ +A   F  M   + ++WTS+I     N    ++LELF  M   G+ P  VT 
Sbjct: 134 YVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTL 193

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            SVL  C   G ++ G++   S     G    +     L+D+Y + G L+ +  V   M 
Sbjct: 194 ASVLNACACSGALKVGKQ-IHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAME 252

Query: 254 MKPHAGAWGALLNA 267
            + ++ +W A++ A
Sbjct: 253 TR-NSVSWTAMIAA 265



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           +++GR  H  +              LV MY+KCG +++A   F G+ ER V +W+++IG 
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 165 LAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGI 222
            A++G G+++L LF  M+  G V PN +TF  V   C V+  +E+GRE H  +M      
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
                    L+++Y R G L+EA  V + M   P A +W +++ AC
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMD-HPDAFSWTSMITAC 165



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 33/185 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L    KVF  +   + V  TAMI+A A+ G  D                    
Sbjct: 234 MYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGD-------------------- 273

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
                      EAL LF  M +  +  +  + + VL AC+H G + +   + H  +E   
Sbjct: 274 -----------EALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYA 322

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178
           +  T T     +D   + G +  A +    M       TW +++    ++   E++ ++ 
Sbjct: 323 IAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVA 382

Query: 179 SLMKQ 183
            L+ +
Sbjct: 383 ELLSK 387


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/458 (41%), Positives = 287/458 (62%), Gaps = 11/458 (2%)

Query: 15  FDGIHEP--DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ------ 66
           F G H    D V   A++   A+CG +   R++FD +   D  AWNA+L+ YA+      
Sbjct: 503 FLGAHAASCDRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDV 562

Query: 67  -CGKSRE--ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
            C  S     L LF  M    ++ NE+++V+V+ AC  LGA+  G WAH Y  + RL + 
Sbjct: 563 ACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVN 622

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             + TALV+MY+ CG ++ A   F  + +R+   + +++ GLA++G G  +L L   M  
Sbjct: 623 CIVATALVEMYAGCGRLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHG 682

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           AGV  + VT +SV+  C   GLV+EG ++FD M  E+GIEP +EHYGC++D+  RAG+L+
Sbjct: 683 AGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLN 742

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
            A  +I++M + P+A  + +L+ AC ++   E+GE    +L+ LE  + G +VL+SN YA
Sbjct: 743 NAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYA 802

Query: 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISR 363
            +  W+     R+ MK+ G+ K PG S+++++  +HEF  GD+THP   EI  M+ EI  
Sbjct: 803 RTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIET 862

Query: 364 RLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWD 423
           RL   G  ++T+  ++D+EEE+K DTL  HSE++AIAF LI+   G PIRI+KNLRVC D
Sbjct: 863 RLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCAD 922

Query: 424 CHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           CH+  K++S+V+ REI++RDR RFHHF++G CSC  +W
Sbjct: 923 CHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 960


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 276/441 (62%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    AM+    KC     AR +FD M  R+ ++W +M+  YAQ G   +AL ++   +
Sbjct: 249 DVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGAR 308

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +  +  + SVL+ C  L  L+ GR  H    R+ +   + + +ALVDMY KCG + 
Sbjct: 309 NTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVE 368

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGC 200
            A   F  M ERN+ TW ++IGG A  G  + +L +F ++++  G  PN +T V+V+  C
Sbjct: 369 DAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITAC 428

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GL ++G E FD+MR  +G+EP  EHY C+VDL GRAG  + A ++I +MPM+P    
Sbjct: 429 SRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISV 488

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL AC+M+  TE+G +AS KL EL+ ++ G +VLLSN+ A +  W    +VR+ MK 
Sbjct: 489 WGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKN 548

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
            G+KK PGCS I     VH F+A D  H R +EI+ +L ++ ++++ +GY+ +T   +YD
Sbjct: 549 VGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYD 608

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EEEEKE  + +HSEK+A+AFGLI +   VPIRI KNLR+C DCH   K +S +  REII
Sbjct: 609 VEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREII 668

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFH+FK+ +CSCK YW
Sbjct: 669 VRDNNRFHYFKQFECSCKDYW 689



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 6/247 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P V C  A +    K G + LAR++F+EMP R+ IAWNA++      G+  E    +  
Sbjct: 148 DPFVSC--AAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFG 205

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++      N VS+ +  +AC     L  G   H ++      M V++  A+VD Y KC  
Sbjct: 206 LREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRC 265

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             KA   F GM+ RN  +W S+I   A +GA E +L ++   +  G  P +    SVL  
Sbjct: 266 AGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTT 325

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  +  GR  H  ++R    I+  +     LVD+YG+ G +++A  V   MP + + 
Sbjct: 326 CAGLLGLNFGRALHAVAVRS--CIDANIFVASALVDMYGKCGGVEDAEQVFLDMPER-NL 382

Query: 259 GAWGALL 265
             W A++
Sbjct: 383 VTWNAMI 389



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + ++   +A++    KCG V+ A ++F +MPER+ + WNAM+ GYA  G ++ AL +F  
Sbjct: 348 DANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDA 407

Query: 80  M-QIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           M +      N +++V+V++AC+  G    G        ER  ++        +VD+  + 
Sbjct: 408 MIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRA 467

Query: 138 GNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGE----KSLELFSLMKQ 183
           G   +A +    M  R ++  W +++G   M+G  E     S +LF L  Q
Sbjct: 468 GMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQ 518



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 3/139 (2%)

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV++YSK      A           V ++T+ I G A +     +L  F+ M + G+RPN
Sbjct: 51  LVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPN 110

Query: 190 EVTFVSVLR-GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALD 247
           + TF S  +   C             ++   +G  P      C  +D+Y + G L  A  
Sbjct: 111 DFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARR 170

Query: 248 VINKMPMKPHAGAWGALLN 266
           +  +MP + +  AW A++ 
Sbjct: 171 LFEEMPNR-NVIAWNAVMT 188


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/443 (40%), Positives = 286/443 (64%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ ++   +A++    KC  +  A  +F +M  ++ ++W AML GY Q G S EA+ +F 
Sbjct: 305 YQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFC 364

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ + ++ ++ ++ SV+S+C +L +L++G   H     + L   +T+  ALV +Y KCG
Sbjct: 365 DMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCG 424

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  +   F  M   +  +WT+++ G A  G   ++L LF  M   G +P++VTF+ VL 
Sbjct: 425 SIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLS 484

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV++G + F+SM +E+ I P  +HY C++DL+ RAGRL+EA   INKMP  P A
Sbjct: 485 ACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDA 544

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W +LL++CR ++N E+G+ A+  L++LE  N  +Y+LLS+IYA    W+ V N+R+ M
Sbjct: 545 IGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGM 604

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + KG++K PGCS I+   +VH F A D+++P  ++I   L +++ ++   GYV + N V+
Sbjct: 605 RDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVL 664

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+++ EK   L  HSEK+AIAFGLI +  G+PIR+VKNLRVC DCH+ TK ISK+  RE
Sbjct: 665 HDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQRE 724

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD  RFH FK+G+CSC  +W
Sbjct: 725 ILVRDAARFHLFKDGRCSCGDFW 747



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 156/267 (58%), Gaps = 2/267 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY++ G +   ++ FD + E +VV    +I+   +C  ++ +R++F +M E+D I+W AM
Sbjct: 186 MYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAM 245

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AG+ Q G  REA+ LF  M++ ++++++ +  SVL+AC  + AL +G+  H YI R   
Sbjct: 246 IAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY 305

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  + +G+ALVDMY KC ++  A   F  M  +NV +WT+++ G   NG  E+++++F  
Sbjct: 306 QDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCD 365

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  G+ P++ T  SV+  C  +  +EEG + F       G+  ++     LV LYG+ G
Sbjct: 366 MQNNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCG 424

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNA 267
            ++++  + ++M       +W AL++ 
Sbjct: 425 SIEDSHRLFSEMSYVDEV-SWTALVSG 450



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 143/297 (48%), Gaps = 36/297 (12%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+   + Y ++VFD + + ++     ++S+ +K   +    ++F  MP RD ++WN+++
Sbjct: 54  YAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLI 113

Query: 62  AGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + YA  G   +++  ++LM  +    LN +++ ++L   +  G +  G   H ++ +   
Sbjct: 114 SAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGF 173

Query: 121 KMTVTLGTALVDMYSK-------------------------------CGNMNKAMDFFWG 149
           +  V +G+ LVDMYSK                               C  +  +   F+ 
Sbjct: 174 QSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYD 233

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M+E++  +WT++I G   NG   ++++LF  M+   +  ++ TF SVL  C  V  ++EG
Sbjct: 234 MQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEG 293

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++ H   +R +Y    ++     LVD+Y +   +  A  V  KM  K +  +W A+L
Sbjct: 294 KQVHAYIIRTDYQDNIFVG--SALVDMYCKCKSIKSAETVFRKMNCK-NVVSWTAML 347


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 289/462 (62%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G     + VFD I   + +  TAMIS  A+ G    A ++F +MP ++ ++W A+
Sbjct: 149 MYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTAL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G  Q G   ++ +LF  M+   + + +   + S++ A  +L  L  G+  H  +    
Sbjct: 209 ISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLG 268

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            + ++ +  ALVDMY+KC ++  A   F  M +R++ +WTS+I G A +G  E++L L++
Sbjct: 269 YESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYN 328

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G++PNEVTFV ++  C  VGLV +GR  F+SM ++YGI P L+HY CL+DL  R+
Sbjct: 329 RMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRS 388

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L+EA ++I  MP KP    W ALL+AC  ++NT +G   +  L+ L+ ++   Y+LLS
Sbjct: 389 GHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLS 448

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA +  W+ V  VR++M A  VKK PG S I + +E   F AG+ +HP   EI  +L 
Sbjct: 449 NIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLE 508

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   +K  GY+ +T+ V++D+E++EKE  L  HSE++A+A+GL+    G+ + IVKNLR
Sbjct: 509 ELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLR 568

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K IS +  REI+VRD NR+HHFK+GKCSC  +W
Sbjct: 569 VCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 2/173 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  +  GI +   +    +I+   KCG +  A  +F+++P RDPI+W ++L    Q   
Sbjct: 26  HCHIIKTGIDQCKSLSNN-LINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANL 84

Query: 70  SREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
               L +F  M   D ++ +      ++ AC  LGA+ QG+  H     + +     + +
Sbjct: 85  PHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKS 144

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           +LVDMY+KCG  +     F  +  +N  +WT++I G A +G    +++LF  M
Sbjct: 145 SLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM 197



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 110/236 (46%), Gaps = 12/236 (5%)

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           +V  L AC    +   G+  H +I +  +    +L   L++MY KCG +  A++ F  + 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            R+  +W S++           +L +F  M KQ G++P+   F  +++ C ++G +++G+
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGK 125

Query: 211 EHFDSMRREYGIEPWLEH---YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +    +   + + P  +       LVD+Y + G  D    V + +  K ++ +W A+++ 
Sbjct: 126 Q----VHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSK-NSISWTAMISG 180

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
              Y  +     A +   ++  KN  ++  L +   +S NW     +   M++KG+
Sbjct: 181 ---YAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI 233


>gi|357158917|ref|XP_003578281.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 547

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/463 (42%), Positives = 280/463 (60%), Gaps = 34/463 (7%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA  G L   +KVFD + E D++    ++   A+  D    R  F  MP RD ++WN ++
Sbjct: 116 YAVCGMLFDARKVFDYVPEVDMIAWNCLLRGYAQVWDARTLRDFFSRMPARDSVSWNTVI 175

Query: 62  AGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           A     G+  EA+ +F  ++   + + + V++VS++SA  +LGAL QG WAH Y+ R  +
Sbjct: 176 ACCIVNGEYEEAIAVFQEMLACQECQPDRVTLVSIISAIAYLGALAQGFWAHAYVCRKGI 235

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           ++   L +AL++MYSKCG +  A+  F      R+V TW ++I G   NG  E++LELF+
Sbjct: 236 EVEEKLSSALINMYSKCGFIEGAVYVFENSCAMRSVDTWNAMITGFTANGCSERALELFT 295

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M+  G  PN++TF SVL  C   G VEE                               
Sbjct: 296 RMESTGFVPNKITFNSVLNACSHGGFVEE------------------------------- 324

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G  ++A  ++  MPM+P A  W AL+ ACR YKN ++G+ A R+L+E    +H  YVLLS
Sbjct: 325 GLFEKAEVIMQMMPMEPDASVWKALVGACRTYKNFKLGKKAGRRLIEAAPNDHTGYVLLS 384

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA   NW  V NVR+ M   GV+K+PG S IEVD  +HEF +GD++H R  ++  MLG
Sbjct: 385 NIYALDGNWKGVHNVRKRMFDSGVQKVPGSSSIEVDGVIHEFISGDKSHSRKKDVYEMLG 444

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
           EI ++LK+AGY  +T+ V+ DI++E+ KE +L  HSEK+AIAFGLIS   G PIR+VKNL
Sbjct: 445 EICQQLKIAGYAPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRVVKNL 504

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           RVC DCH+  K++SK++ R IIVRD NRFH F EG CSC+ YW
Sbjct: 505 RVCGDCHNAIKLLSKIYGRSIIVRDANRFHCFSEGSCSCRDYW 547


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/440 (42%), Positives = 274/440 (62%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T+++   AK G +D+A ++F  M  R+ ++W+AM++G+AQ G+S EAL LF  MQ
Sbjct: 243 DVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQ 302

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  ++VS L AC+++G L  GR  H +I R R      LGTA +DMYSKCG++ 
Sbjct: 303 ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLA 361

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +R++  W ++I     +G G+ +L LF  M + G+RP+  TF S+L    
Sbjct: 362 SAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG+  F  M   + I P  +HY CLVDL  R+G ++EA D++  M  +P    W
Sbjct: 422 HSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIW 481

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ C   K  E+GE  +  ++EL+  + G   L+SN+YA +K WD+V  VR++MK  
Sbjct: 482 VALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDS 541

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G KK+PGCS IE+    H F   D++HP+  EI   + ++   ++  GY+  T  V +D+
Sbjct: 542 GSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDL 601

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE KE  L  HSEK+AIAFGL++   G  + I+KNLRVC DCHD  K ISK+ +REI+V
Sbjct: 602 EEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVV 661

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC+ YW
Sbjct: 662 RDAKRFHHFKDGVCSCRDYW 681



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 3/256 (1%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           + FD  ++ DV   ++++   A+ G +  A K+FD MP RD + W+ M+AG+   G+  +
Sbjct: 133 RAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLD 192

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A+ ++  M+   VK +EV M+ V+ ACT    +  G   H ++ R+ ++M V   T+LVD
Sbjct: 193 AIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+K G ++ A   F  M  RN  +W+++I G A NG  +++L LF  M+ +G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            VS L  C  +G ++ GR     + R +     L      +D+Y + G L  A  + N +
Sbjct: 313 LVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAA--IDMYSKCGSLASAQMLFNMI 370

Query: 253 PMKPHAGAWGALLNAC 268
             +     W A++  C
Sbjct: 371 SDRDLI-LWNAMIACC 385



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 13/222 (5%)

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           +++ G    AL +F  +     + +  +    LSAC  LG L  G            K  
Sbjct: 84  HSRRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V + ++L+ +Y++ G M  A+  F  M  R+  TW++++ G    G    +++++  M++
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV+ +EV  + V++ C     V  G      + R +G+   +     LVD+Y + G LD
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 244 EALDVINKMPMKPHAGAWGALLN----------ACRMYKNTE 275
            A  V   M  +    +W A+++          A R+++N +
Sbjct: 262 VACRVFGLMVHRNDV-SWSAMISGFAQNGQSDEALRLFRNMQ 302


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 280/448 (62%), Gaps = 13/448 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T ++ + AKCGD+  ARK+FDEM  RD   WN++LAG AQ  +   AL LFH + 
Sbjct: 145 DVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLA 204

Query: 82  IHDVKL------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
               +L      NEV++V+ LSAC  +G L  G + H + +R  L   V +  +L+DMYS
Sbjct: 205 NSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYS 264

Query: 136 KCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           KCG++++A+D F  +K  ++ + ++ + I   +M+G G  +L LF  M    + P+ VT+
Sbjct: 265 KCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTY 323

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++VL GC   GLV++G   F+SMR    + P ++HYG +VDL GRAGRL EA D +  MP
Sbjct: 324 LAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMP 379

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
                  W  LL A +M+   E+ ELA+ KL EL +   G YVLLSN+YA    W  V  
Sbjct: 380 FPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGR 439

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR  M++  V+K+PG S  E+D  +H+F  GD+ HPR+ EI   L +I  R+   GY   
Sbjct: 440 VRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPE 499

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           T+ V++DI EEEK+  LC HSEK+AIAFGLI+   G  +R++KNLR+C DCH V K+ISK
Sbjct: 500 TSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISK 559

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            + R I++RDR RFH F++G+CSC+ YW
Sbjct: 560 AYGRVIVIRDRARFHRFEDGQCSCRDYW 587



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R  +   V L T L+D Y+KCG++  A   F  M  R+V TW S++ GLA     
Sbjct: 134 HALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEP 193

Query: 172 EKSLELFSLMKQAGV------RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
             +L LF  +  +         PNEVT V+ L  C  +GL+++G  +     + +G++  
Sbjct: 194 NLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGM-YVHEFAKRFGLDRN 252

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
           +     L+D+Y + G L  ALDV + + P      ++ A + A  M+ +   G  A R  
Sbjct: 253 VRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGH---GGDALRLF 309

Query: 285 VELETK 290
            E+ T+
Sbjct: 310 DEMPTR 315


>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/457 (42%), Positives = 292/457 (63%), Gaps = 12/457 (2%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +CQ    G+    ++C T ++ A +K GD+  A K+FDEMP RD  +WNA++AG     +
Sbjct: 132 HCQINRRGLSADSLLC-TTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNR 190

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGT 128
           + EA+ L+  M+   ++ +EV++V+ L AC+HLG + +G    H Y   N     V +  
Sbjct: 191 ASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDN-----VIVSN 245

Query: 129 ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
           A +DMYSKCG ++KA   F     +++V TW ++I G A++G   ++LE+F  ++  G++
Sbjct: 246 AAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIK 305

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P++V++++ L  C   GLVE G   F++M  + G+E  ++HYGC+VDL  RAGRL EA D
Sbjct: 306 PDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMKHYGCVVDLLSRAGRLREAHD 364

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
           +I  M M P    W +LL A  +Y + EM E+ASR++ E+   N G +VLLSN+YA    
Sbjct: 365 IICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGR 424

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL 367
           W  V  VR  M++K VKK+PG S IE    +HEF+  D++H ++ EI   + EI  +++ 
Sbjct: 425 WKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIRE 484

Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISL---KEGVPIRIVKNLRVCWDC 424
            GYVA T  V++DI EEEKE+ LC HSEK+A+A+GL+ +    E  P+R++ NLR+C DC
Sbjct: 485 DGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDC 544

Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           H V K ISK++ REIIVRDR RFH FK+G CSC+ +W
Sbjct: 545 HVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 17/244 (6%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A +  GD+  A ++F  +P+     WNA++ G+A       A   +  M       + + 
Sbjct: 46  AISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAIC 105

Query: 92  MVSVLS------ACTHL---GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
            V  L+      AC       A+DQ    H  I R  L     L T L+D YSK G++  
Sbjct: 106 RVDALTCSFTLKACARALCSSAMDQ---LHCQINRRGLSADSLLCTTLLDAYSKNGDLIS 162

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A   F  M  R+V +W ++I GL       +++EL+  M+  G+R +EVT V+ L  C  
Sbjct: 163 AYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSH 222

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
           +G V+EG   F     +  I          +D+Y + G +D+A  V  +   K     W 
Sbjct: 223 LGDVKEGENIFHGYSNDNVIVS-----NAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWN 277

Query: 263 ALLN 266
            ++ 
Sbjct: 278 TMIT 281



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 2/164 (1%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAML 61
           + LG +   + +F G    +V+   A I   +KCG VD A ++F++   ++  + WN M+
Sbjct: 221 SHLGDVKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMI 280

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            G+A  G++  AL +F  ++ + +K ++VS ++ L+AC H G ++ G      +    ++
Sbjct: 281 TGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVE 340

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGG 164
             +     +VD+ S+ G + +A D    M    +   W S++G 
Sbjct: 341 RNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGA 384


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/440 (42%), Positives = 279/440 (63%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T+++   AK G  D+AR++F  MP R+ ++WNA+++G+AQ G + EAL LF  M 
Sbjct: 246 DVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMS 305

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  ++VS L AC  +G L  G+  H +I R RL+    LGTA++DMYSKCG++ 
Sbjct: 306 TSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGSLE 364

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  R++  W ++I     +G G  +L LF  + + G++P+  TF S+L    
Sbjct: 365 SARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS 424

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG+  FD M  E+GIEP  +H  C+VDL  R+G ++EA +++  M  +P    W
Sbjct: 425 HSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIW 484

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ C   K  E+GE  ++K++E + ++ G   L+SN+YA +K WD+V  +R++MK  
Sbjct: 485 VALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDS 544

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G KK+PG S+IEV    H F   D++HP++ EI  M+ ++S  ++  GYV  T  V +D+
Sbjct: 545 GSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDL 604

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +E+ KE  L  HSE++AIAFGL++   G  + I+KNLRVC DCHD  K ISK+ +REI+V
Sbjct: 605 DEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVV 664

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC  YW
Sbjct: 665 RDAKRFHHFKDGACSCGDYW 684



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 11/309 (3%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           + F   +  DV   +A++   ++CG +  A ++FD MP +D +AW+ M+AG+   G+  E
Sbjct: 136 RAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVE 195

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL ++  M+ H V  +EV MV V+ ACT  G    G   H    R+ ++M V + T+LVD
Sbjct: 196 ALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVD 255

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+K G+ + A   F  M  RN  +W ++I G A NG  +++L+LF  M  +G++P+   
Sbjct: 256 MYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGA 315

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            VS L  C  VG ++ G+     + R    +  L     ++D+Y + G L+ A  + NK+
Sbjct: 316 LVSALLACADVGFLKLGKSIHGFILRRLEFQCILG--TAVLDMYSKCGSLESARKLFNKL 373

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLL------SNIYAES 305
             +     W A++  C  +          ++L E   K +H  +  L      S +  E 
Sbjct: 374 SSRDLV-LWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEG 432

Query: 306 KNW-DRVIN 313
           K W DR+I 
Sbjct: 433 KFWFDRMIT 441



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 5/241 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPE-RDPI-AWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           ++ +A A+ G +D A       P  R  I AWNA+LA  ++ G    AL +F  +     
Sbjct: 49  SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALP-SSA 107

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + +  +    L+AC  LG LD      V          V + +AL+ +YS+CG M  A+ 
Sbjct: 108 RPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIR 167

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F GM  ++   W++++ G    G   ++L ++S M++ GV  +EV  V V++ C + G 
Sbjct: 168 VFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGN 227

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              G        R +G+   +     LVD+Y + G  D A  V   MP + +A +W AL+
Sbjct: 228 TRMGASVHGRFLR-HGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYR-NAVSWNALI 285

Query: 266 N 266
           +
Sbjct: 286 S 286


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/456 (42%), Positives = 285/456 (62%), Gaps = 6/456 (1%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  G    D   Q A+++  +KCGD++ AR++FD MPE+  +AWN++++G+ Q G 
Sbjct: 130 HCHAVVSGF-GLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGL 188

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + +A+ +F+ M+    + +  + VS+LSAC   GA+  G W H YI    L + V LGTA
Sbjct: 189 AEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTA 248

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRP 188
           L+++YS+CG++ KA + F  MKE NV  WT++I     +G G+++++LF+ M+   G  P
Sbjct: 249 LINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIP 308

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           N VTFV+VL  C   GLVE+GR  +  M   Y + P +EH+ C+VD+ GRAG LDEA   
Sbjct: 309 NNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRF 368

Query: 249 INKMPMKPHAGA---WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
           I ++    +A A   W A+L AC+M++N ++G   +++L+ LE +N G +V+LSNIYA S
Sbjct: 369 IQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALS 428

Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
              D V ++R  M    ++K  G S+IEV+ + + F  GDE+H    EI   L  +  R 
Sbjct: 429 GKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRC 488

Query: 366 KLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
           K  GY   +  VM+ +EEEEKE  L  HSEK+A+AFGL+   +   I +VKNLR+C DCH
Sbjct: 489 KEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDSA-ITVVKNLRICEDCH 547

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              K IS V NR+IIVRD+ RFHHF+ G CSC  YW
Sbjct: 548 SAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 2/241 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I+       +     +F  +P  D   +N+++   ++       +  +  M   +V 
Sbjct: 45  TKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVS 104

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +  +  SV+ +C  L AL  G+  H +   +   +   +  ALV  YSKCG+M  A   
Sbjct: 105 PSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQV 164

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M E++V  W S++ G   NG  E ++ +F  M+++G  P+  TFVS+L  C   G +
Sbjct: 165 FDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAI 224

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G      +  E G++  ++    L++LY R G + +A +V +KM  + +  AW A+++
Sbjct: 225 SLGSWVHQYIVSE-GLDVNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMIS 282

Query: 267 A 267
           A
Sbjct: 283 A 283


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/466 (41%), Positives = 288/466 (61%), Gaps = 9/466 (1%)

Query: 2   YAELGCLGYCQKVFDG--IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           YA+ G +   +++ D   + + +V+  TA++    K GD   AR++FD M  RD IAW A
Sbjct: 525 YAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTA 584

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY Q G++ EA+ LF  M +   + N  ++ +VLSAC  L  LD G+  H    R+ 
Sbjct: 585 MIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSL 644

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFF----WGMKERNVYTWTSVIGGLAMNGAGEKSL 175
            + +V++  A++ +Y++ G++  A   F    W    +   TWTS+I  +A +G GE+++
Sbjct: 645 QEQSVSVSNAIITVYARSGSVPLARRVFDQICW---RKETITWTSMIVAMAQHGLGEQAV 701

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LF  M + GV+P+ +T+V VL  C   G V++G+ +++ M+ E+GI P + HY C+VDL
Sbjct: 702 VLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDL 761

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
           + RAG L EA + I +MP+ P    WG+LL ACR+ KN ++ ELA+ KL+ ++  N GAY
Sbjct: 762 HARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAY 821

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
             L+N+Y+    W+    + ++ K KGVKK  G S   V  +VH F A D  HP+ + I 
Sbjct: 822 SALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIY 881

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
               E+   +K AG+V + N V++D+++E KE+ L +HSEK+AIAFGLIS  E   +RI+
Sbjct: 882 RKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIM 941

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH   K ISK  +REIIVRD  RFHHF++G CSCK YW
Sbjct: 942 KNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 147/332 (44%), Gaps = 38/332 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     + VF+ +    V     M+S     G ++LA  MF+ M ER  ++WN +
Sbjct: 391 MYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTI 450

Query: 61  LAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY Q G    AL  F  ++    ++ +  ++ SVLSAC +L  L  G+  H YI R  
Sbjct: 451 IAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 120 LK---------------------------------MTVTLGTALVDMYSKCGNMNKAMDF 146
           +                                  + V   TAL++ Y K G+  +A + 
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREI 570

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  R+V  WT++I G   NG  ++++ELF  M   G  PN  T  +VL  C  +  +
Sbjct: 571 FDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYL 630

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           + G++ H  ++R     E  +     ++ +Y R+G +  A  V +++  +     W +++
Sbjct: 631 DYGKQIHCKAIRSLQ--EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMI 688

Query: 266 NACRMYKNTEMGELASRKLVELETK-NHGAYV 296
            A   +   E   +   ++V +  K +H  YV
Sbjct: 689 VAMAQHGLGEQAVVLFEEMVRVGVKPDHITYV 720



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 35/280 (12%)

Query: 6   GCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           GC    + +FD I     +     +++S  AK G +  A  +F EMP+RD ++W  M+ G
Sbjct: 262 GCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVG 321

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
             + G+  +A+  F  M       ++ ++ +VLS+C  + A   GR  H ++ +  L   
Sbjct: 322 LNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSC 381

Query: 124 VTLGTALVDMYSKCGN-------------------------------MNKAMDFFWGMKE 152
           V +  +++ MY KCG+                               M  A+  F  M E
Sbjct: 382 VPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVE 441

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           R++ +W ++I G   NG    +L+ FS M  A  + P+  T  SVL  C  + +++ G++
Sbjct: 442 RSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQ 501

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
               + R  G+    +    L+  Y ++G ++ A  ++++
Sbjct: 502 MHSYILRT-GMPCSSQIMNALISTYAKSGSVETARRIMDQ 540


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 290/449 (64%), Gaps = 1/449 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    E DV  Q ++I+   +CG+++L+  +F+++  +   +W++M +     G   E 
Sbjct: 159 VFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSEC 218

Query: 74  LHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           L LF  M +  ++K  E  MVS LSAC + GAL+ G   H ++ RN  ++ + + T+LVD
Sbjct: 219 LMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLVD 278

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG ++ A+  F  M++RN  T++++I G A++G GE +L +FS M + G+ P+ V 
Sbjct: 279 MYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVV 338

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +VS+L  C   GLV+EGR  F  M +E  +EP  EHYGCLVDL GRAG L+EAL+ I  +
Sbjct: 339 YVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSI 398

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P++ +   W + L+ CR+++N E+G++A+++L++L + N G Y+L+SN+Y+++  WD V 
Sbjct: 399 PIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDVA 458

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
             R  +  KG+K+ PG S ++V  + H F + D +HP+  EI  ML ++  +LK  GY  
Sbjct: 459 RSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYSP 518

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           +   ++ +++EEEK++ L  HS+KVAIAF L+    G  I+I +NLR+C DCH  TK IS
Sbjct: 519 DLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKIS 578

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ++ REI+VRDRNRFH FK G CSCK YW
Sbjct: 579 MIYEREIVVRDRNRFHLFKGGTCSCKDYW 607



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 127/285 (44%), Gaps = 13/285 (4%)

Query: 29  MISACAKCG---DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +++ CA  G    ++ A  +F  + +     +  M+ GY        AL  ++ M    +
Sbjct: 70  VLAKCAHSGWENSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGI 129

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + +  +   +L ACT L A+ +G+  H ++ +  L+  V +  +L++MY +CG M  +  
Sbjct: 130 EPDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSST 189

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVG 204
            F  ++ ++  +W+S+       G   + L LF  M ++  ++  E   VS L  C   G
Sbjct: 190 VFEKLEFKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTG 249

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
            +  G      + R    E  +     LVD+Y + G +D AL +  KM  K +   + A+
Sbjct: 250 ALNLGMSIHGFLLRNIS-ELNIIVKTSLVDMYVKCGCIDNALHIFQKME-KRNNLTYSAM 307

Query: 265 LNACRMYKNTEMGELASRKLVELETK----NHGAYVLLSNIYAES 305
           ++   ++     GE A R   E+  +    +H  YV L N  + S
Sbjct: 308 ISGFALHGE---GESALRMFSEMIKEGLEPDHVVYVSLLNACSHS 349


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/435 (42%), Positives = 278/435 (63%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++   AKCG ++ A ++F+ M ++  + W++M+AGY Q     EAL L+   Q   ++
Sbjct: 203 TALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLE 262

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N+ ++ SV+ AC++L AL +G+  H  I ++     V + ++ VDMY+KCG++ ++   
Sbjct: 263 QNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYII 322

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++E+N+  W ++I G A +   ++ + LF  M+Q G+ PNEVTF S+L  C   GLV
Sbjct: 323 FSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLV 382

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEGR  F  MR  YG+ P + HY C+VD+ GRAG L EA ++I  +P +P A  WG+LL 
Sbjct: 383 EEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLA 442

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           +CR+ KN E+ E+A++KL ELE +N G +VLLSNIYA +K W+ +   R++++   VKK+
Sbjct: 443 SCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKV 502

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            G S I++  +VH F  G+ +HPR  EI  ML  +   L+  GY  +    ++D+E  +K
Sbjct: 503 RGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKK 562

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E+ L +HSEK+A+ FGL+ L EG  +RI+KNLR+C DCH+  K  S    R IIVRD NR
Sbjct: 563 EELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANR 622

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF +G CSC  +W
Sbjct: 623 FHHFSDGHCSCGEFW 637



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 130/237 (54%), Gaps = 3/237 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV     +I+A +KCG V+LAR++FD M ER  ++WN M+  Y +     EAL +F  
Sbjct: 95  QGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWE 154

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+    K +E ++ SVLSAC       + +  H    +  L + + +GTAL+D+Y+KCG 
Sbjct: 155 MRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGM 214

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A+  F  M++++  TW+S++ G   +   E++L L+   ++  +  N+ T  SV+  
Sbjct: 215 INDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 274

Query: 200 CCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           C  +  + EG++    +R+  +G   ++      VD+Y + G L E+  + +++  K
Sbjct: 275 CSNLAALIEGKQMHAVIRKSGFGSNVFVASSA--VDMYAKCGSLRESYIIFSEVQEK 329



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 13/242 (5%)

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F+++Q  D        + +L  C   GA+ + +  H    R  L+  VTL   L++ YSK
Sbjct: 58  FNVVQASD-------FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSK 110

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A   F GM ER++ +W ++IG    N    ++L++F  M+  G + +E T  SV
Sbjct: 111 CGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSV 170

Query: 197 LRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L  C      +E  + H  SM+    +  ++     L+DLY + G +++A+ V   M  K
Sbjct: 171 LSACGANCDALECKKLHCLSMKTSLDLNLYVG--TALLDLYAKCGMINDAVQVFESMQDK 228

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
                W +++      KN E   L  R+   +  + +     LS++     N   +I  +
Sbjct: 229 SSV-TWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQN--QFTLSSVICACSNLAALIEGK 285

Query: 316 QI 317
           Q+
Sbjct: 286 QM 287



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 2/146 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            +V   ++ +   AKCG +  +  +F E+ E++   WN +++G+A+  + +E + LF  M
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKM 357

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCGN 139
           Q   +  NEV+  S+LS C H G +++GR     +     L   V   + +VD+  + G 
Sbjct: 358 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 417

Query: 140 MNKAMDFFWGMK-ERNVYTWTSVIGG 164
           +++A +    +  E     W S++  
Sbjct: 418 LSEAYELIKSIPFEPTASIWGSLLAS 443


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/441 (42%), Positives = 278/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM- 80
           D+    A++   AKCG +  A  +F EM  +D I+WN ++ GY++   + EAL LF+L+ 
Sbjct: 280 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 339

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +      +E ++  VL AC  L A D+GR  H YI RN       +  +LVDMY+KCG +
Sbjct: 340 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 399

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  +  +++ +WT +I G  M+G G++++ LF+ M+QAG+  +E++FVS+L  C
Sbjct: 400 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 459

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV+EG   F+ MR E  IEP +EHY C+VD+  R G L +A   I  MP+ P A  
Sbjct: 460 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 519

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL  CR++ + ++ E  + K+ ELE +N G YVL++NIYAE++ W++V  +R+ +  
Sbjct: 520 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 579

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G++K PGCS IE+   V+ F AGD ++P    IE  L ++  R+   GY   T   + D
Sbjct: 580 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALID 639

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            EE EKE+ LC HSEK+A+A G+IS   G  IR+ KNLRVC DCH++ K +SK+  REI+
Sbjct: 640 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 699

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NRFH FK+G CSC+G+W
Sbjct: 700 LRDSNRFHQFKDGHCSCRGFW 720



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D  C T ++   +KCGD+D A+ +F EM +R  +++ +M+AGYA+ G + EA+ LF  M+
Sbjct: 180 DRFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  +  ++ +VL+ C     LD+G+  H +I+ N L   + +  AL+DMY+KCG+M 
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGC 200
           +A   F  M+ +++ +W ++IGG + N    ++L LF+ L+++    P+E T   VL  C
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 358

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
             +   ++GRE H   MR  Y  +  + +   LVD+Y + G L
Sbjct: 359 ASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGAL 399



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 123/218 (56%), Gaps = 3/218 (1%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98
           VD ARK+FDEM ERD I+WN+++ GY   G + + L +F  M +  ++++  ++VSV + 
Sbjct: 95  VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG 154

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C     +  GR  H    +            L+DMYSKCG+++ A   F  M +R+V ++
Sbjct: 155 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 214

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           TS+I G A  G   ++++LF  M++ G+ P+  T  +VL  C    L++EG+   + ++ 
Sbjct: 215 TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE 274

Query: 219 -EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            + G + ++ +   L+D+Y + G + EA  V ++M +K
Sbjct: 275 NDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK 310



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 3/209 (1%)

Query: 46  FDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105
           FDE+     + WN ++   A+ G    ++ LF  M    V+++  +   V  + + L ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGL 165
             G   H +I ++      ++G +LV  Y K   ++ A   F  M ER+V +W S+I G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
             NG  EK L +F  M  +G+  +  T VSV  GC    L+  GR  H   ++  +  E 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMP 253
                  L+D+Y + G LD A  V  +M 
Sbjct: 181 --RFCNTLLDMYSKCGDLDSAKAVFREMS 207


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/440 (42%), Positives = 270/440 (61%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+  Q A+++  ++CG ++ +   F++    D IAWNA+++G+ Q G + EAL +F  M 
Sbjct: 625  DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +  N  +  S + A +    + QG+  H  I +        +  AL+ MY+KCG+++
Sbjct: 685  REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  +  +N  +W ++I   + +G G ++L+ F  M  + VRPN VT V VL  C 
Sbjct: 745  DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             +GLV++G  +F+SM  EYG+ P  EHY C+VD+  RAG L  A + I +MP+KP A  W
Sbjct: 805  HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
              LL+AC ++KN E+GE A+  L+ELE ++   YVLLSN+YA SK WD     RQ MK K
Sbjct: 865  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            GVKK PG S IEV   +H F+ GD+ HP  +EI     ++++R    GYV +   ++ ++
Sbjct: 925  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNEL 984

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            + E+K+  +  HSEK+AI+FGL+SL   VPI ++KNLRVC DCH   K +SKV NREIIV
Sbjct: 985  QHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1044

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD  RFHHF+ G CSCK YW
Sbjct: 1045 RDAYRFHHFEGGACSCKDYW 1064



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 2/248 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+++  AKC D++ A   F E    + + WN ML  Y      R +  +F  MQI ++  
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 488

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N+ +  S+L  C  LG L+ G   H  I +   ++   + + L+DMY+K G ++ A D  
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
                ++V +WT++I G       +K+L  F  M   G+R +EV   + +  C  +  ++
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG++   +     G    L     LV LY R G+++E+     +     +  AW AL++ 
Sbjct: 609 EGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSG 666

Query: 268 CRMYKNTE 275
            +   N E
Sbjct: 667 FQQSGNNE 674



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 133/271 (49%), Gaps = 5/271 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G      VC  A++S     G++  A  +F  M +RD + +N ++ G +QCG   +A+ L
Sbjct: 318 GFSSDTYVCN-ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M +  ++ +  ++ S++ AC+  G L +G+  H Y  +        +  AL+++Y+K
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 436

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C ++  A+D+F   +  NV  W  ++    +      S  +F  M+   + PN+ T+ S+
Sbjct: 437 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L+ C  +G +E G + H   ++  + +  ++     L+D+Y + G+LD A D++ +   K
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK 554

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVE 286
               +W  ++     Y   +      R++++
Sbjct: 555 D-VVSWTTMIAGYTQYNFDDKALTTFRQMLD 584



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           ++ G+ +  VVC   +I   ++ G VDLAR++FD +  +D  +W AM++G ++     EA
Sbjct: 214 LYQGLRDSTVVCN-PLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEA 272

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  M +  +     +  SVLSAC  + +L+ G   H  + +        +  ALV +
Sbjct: 273 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL 332

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y   GN+  A   F  M +R+  T+ ++I GL+  G GEK++ELF  M   G+ P+  T 
Sbjct: 333 YFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTL 392

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            S++  C   G +  G++ H  + +  +     +E  G L++LY +   ++ ALD   + 
Sbjct: 393 ASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETALDYFLET 450

Query: 253 PMKPHAGAWGALL----------NACRMYKNTEMGELASRK 283
            ++ +   W  +L          N+ R+++  ++ E+   +
Sbjct: 451 EVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 123/264 (46%), Gaps = 3/264 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   + Q +         VC + +I   AK G +D A  +      +D ++W  M+AG
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVC-SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 565

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y Q     +AL  F  M    ++ +EV + + +SAC  L AL +G+  H     +     
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 625

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           +    ALV +YS+CG + ++   F   +  +   W +++ G   +G  E++L +F  M +
Sbjct: 626 LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 685

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            G+  N  TF S ++       +++G++   ++  + G +   E    L+ +Y + G + 
Sbjct: 686 EGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSIS 744

Query: 244 EALDVINKMPMKPHAGAWGALLNA 267
           +A     ++  K    +W A++NA
Sbjct: 745 DAEKQFLEVSTKNEV-SWNAIINA 767



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 106/234 (45%), Gaps = 7/234 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           GD+  A K+FDEMPER    WN M+   A      E   LF  M   +V  NE +   VL
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 193

Query: 97  SACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
            AC     A D     H  I    L+ +  +   L+D+YS+ G ++ A   F G++ ++ 
Sbjct: 194 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 253

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W ++I GL+ N    +++ LF  M   G+ P    F SVL  C  +  +E G E    
Sbjct: 254 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHG 312

Query: 216 MRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +  + G     + Y C  LV LY   G L  A  + + M  +  A  +  L+N 
Sbjct: 313 LVLKLGFSS--DTYVCNALVSLYFHLGNLISAEHIFSNMSQRD-AVTYNTLING 363



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 85  VKLNEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           ++ N  ++  +L  C    G+LD+GR  H  I +  L     L   L D Y   G++  A
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M ER ++TW  +I  LA      +   LF  M    V PNE TF  VL  C   
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            +  +  E   +     G+         L+DLY R G +D A  V + + +K H+ +W A
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS-SWVA 258

Query: 264 LLNA 267
           +++ 
Sbjct: 259 MISG 262


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/433 (41%), Positives = 275/433 (63%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I +  KC  ++ A ++F++    D IA+ +M+   +QC    +A+ LF  M    +  +
Sbjct: 445 LIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPD 504

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
              + S+L+AC  L A +QG+  H ++ + +    V  G ALV  Y+KCG++  A   F 
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFS 564

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           G+ E+ V +W+++IGGLA +G G+++L++F  M    + PN +T  SVL  C   GLV+E
Sbjct: 565 GLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDE 624

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            + +F+SM+  +GIE   EHY C++DL GRAG+LD+A++++N MP + +A  WGALL A 
Sbjct: 625 AKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAAS 684

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R++++ E+G LA+ KL  LE +  G +VLL+N YA +  WD V  VR++MK   VKK P 
Sbjct: 685 RVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPA 744

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKED 388
            S +E+  +VH F  GD++HPR  +I   L E+   +  AGYV N    ++D+++ EKE 
Sbjct: 745 MSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKEL 804

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
            L  HSE++A+AF LIS   G PIR+ KNLR+C DCH   K IS + +REII+RD NRFH
Sbjct: 805 LLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFH 864

Query: 449 HFKEGKCSCKGYW 461
           HF++G CSC+ YW
Sbjct: 865 HFRDGACSCRDYW 877



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 3/248 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D+    A+++     G VD AR +FDE   ER+ ++WN +++ Y +  +   A+ +F  M
Sbjct: 134 DIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM 193

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
               V+ NE     V++ACT    L+ GR  H  + R      V    ALVDMYSK G++
Sbjct: 194 VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDI 253

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  + E +V +W + I G  ++G  + +LEL   MK +G+ PN  T  S+L+ C
Sbjct: 254 RMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKAC 313

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G    GR+    M +          +G LVD+Y + G LD+A  V + +P +     
Sbjct: 314 AGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDWIPQRDLV-L 371

Query: 261 WGALLNAC 268
           W AL++ C
Sbjct: 372 WNALISGC 379



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 4/247 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D      ++   AK G +D A+K+FD +P+RD + WNA+++G +   +  EAL LF  
Sbjct: 335 DSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCR 394

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+     +N  ++ +VL +   L A+   R  H   E+        +   L+D Y KC  
Sbjct: 395 MRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDC 454

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A   F      ++  +TS+I  L+    GE +++LF  M + G+ P+     S+L  
Sbjct: 455 LNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNA 514

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++R++  + +  +   LV  Y + G +++A    + +P K   
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDVFAGN--ALVYTYAKCGSIEDADLAFSGLPEKG-V 571

Query: 259 GAWGALL 265
            +W A++
Sbjct: 572 VSWSAMI 578



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 98/193 (50%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV    A++   +K GD+ +A  +F ++PE D ++WNA ++G    G  + AL L  
Sbjct: 233 YDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   +  N  ++ S+L AC   GA + GR  H ++ +        +   LVDMY+K G
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHG 352

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A   F  + +R++  W ++I G +      ++L LF  M++ G   N  T  +VL+
Sbjct: 353 LLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLK 412

Query: 199 GCCVVGLVEEGRE 211
               +  + + R+
Sbjct: 413 STASLEAISDTRQ 425



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 33/321 (10%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           V +  ++S  +KC     AR++FDE+P+   ++W++++  Y+     R+AL  F  M+  
Sbjct: 38  VFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSC 97

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            V+ NE  +  VL      G    G   H       L   + +  ALV MY   G +++A
Sbjct: 98  SVRCNEFVLPVVLKCAPDAGF---GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEA 154

Query: 144 -MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
            M F     ERN  +W  ++     N     ++++F  M   GV+PNE  F  V+  C  
Sbjct: 155 RMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTG 214

Query: 203 VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              +E GR+ H   +R  Y  + +  +   LVD+Y + G +  A  V  K+P +    +W
Sbjct: 215 SRDLEAGRKVHAMVIRTGYDKDVFTAN--ALVDMYSKLGDIRMAAVVFGKVP-ETDVVSW 271

Query: 262 GALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
            A ++ C ++ + +   EL       L+ K+ G   L+ N++  S           I+KA
Sbjct: 272 NAFISGCVLHGHDQHALELL------LQMKSSG---LVPNVFTLS----------SILKA 312

Query: 321 KGVKKLPGCSVIEVDREVHEF 341
                  G     + R++H F
Sbjct: 313 -----CAGSGAFNLGRQIHGF 328



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A++   AKCG ++ A   F  +PE+  ++W+AM+ G AQ G  + AL +FH M 
Sbjct: 539 DVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMV 598

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              +  N ++M SVL AC H G +D+  R+ +   E   ++ T      ++D+  + G +
Sbjct: 599 DEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKL 658

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
           + AM+    M  + N   W +++  
Sbjct: 659 DDAMELVNSMPFQTNAAVWGALLAA 683



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
           +L QG  AH++    +  +       L+  YSKC     A   F  + +    +W+S++ 
Sbjct: 19  SLLQG--AHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVT 76

Query: 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223
             + N     +L  F  M+   VR NE     VL+     G   +   H  +M    G +
Sbjct: 77  AYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQ--LHALAMATGLGGD 134

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            ++ +   LV +YG  G +DEA  V ++   + +  +W  L++A
Sbjct: 135 IFVAN--ALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/440 (42%), Positives = 270/440 (61%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D+  Q A+++  ++CG ++ +   F++    D IAWNA+++G+ Q G + EAL +F  M 
Sbjct: 585  DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 644

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +  N  +  S + A +    + QG+  H  I +        +  AL+ MY+KCG+++
Sbjct: 645  REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 704

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  +  +N  +W ++I   + +G G ++L+ F  M  + VRPN VT V VL  C 
Sbjct: 705  DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 764

Query: 202  VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             +GLV++G  +F+SM  EYG+ P  EHY C+VD+  RAG L  A + I +MP+KP A  W
Sbjct: 765  HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 824

Query: 262  GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
              LL+AC ++KN E+GE A+  L+ELE ++   YVLLSN+YA SK WD     RQ MK K
Sbjct: 825  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 884

Query: 322  GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            GVKK PG S IEV   +H F+ GD+ HP  +EI     ++++R    GYV +   ++ ++
Sbjct: 885  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNEL 944

Query: 382  EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            + E+K+  +  HSEK+AI+FGL+SL   VPI ++KNLRVC DCH   K +SKV NREIIV
Sbjct: 945  QHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1004

Query: 442  RDRNRFHHFKEGKCSCKGYW 461
            RD  RFHHF+ G CSCK YW
Sbjct: 1005 RDAYRFHHFEGGACSCKDYW 1024



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 2/248 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+++  AKC D++ A   F E    + + WN ML  Y      R +  +F  MQI ++  
Sbjct: 389 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 448

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N+ +  S+L  C  LG L+ G   H  I +   ++   + + L+DMY+K G ++ A D  
Sbjct: 449 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
                ++V +WT++I G       +K+L  F  M   G+R +EV   + +  C  +  ++
Sbjct: 509 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 568

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG++   +     G    L     LV LY R G+++E+     +     +  AW AL++ 
Sbjct: 569 EGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSG 626

Query: 268 CRMYKNTE 275
            +   N E
Sbjct: 627 FQQSGNNE 634



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 133/271 (49%), Gaps = 5/271 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G      VC  A++S     G++  A  +F  M +RD + +N ++ G +QCG   +A+ L
Sbjct: 278 GFSSDTYVCN-ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 336

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M +  ++ +  ++ S++ AC+  G L +G+  H Y  +        +  AL+++Y+K
Sbjct: 337 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 396

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C ++  A+D+F   +  NV  W  ++    +      S  +F  M+   + PN+ T+ S+
Sbjct: 397 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 456

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L+ C  +G +E G + H   ++  + +  ++     L+D+Y + G+LD A D++ +   K
Sbjct: 457 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK 514

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVE 286
               +W  ++     Y   +      R++++
Sbjct: 515 D-VVSWTTMIAGYTQYNFDDKALTTFRQMLD 544



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           ++ G+ +  VVC   +I   ++ G VDLAR++FD +  +D  +W AM++G ++     EA
Sbjct: 174 LYQGLRDSTVVCN-PLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEA 232

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           + LF  M +  +     +  SVLSAC  + +L+ G   H  + +        +  ALV +
Sbjct: 233 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL 292

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y   GN+  A   F  M +R+  T+ ++I GL+  G GEK++ELF  M   G+ P+  T 
Sbjct: 293 YFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTL 352

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            S++  C   G +  G++ H  + +  +     +E  G L++LY +   ++ ALD   + 
Sbjct: 353 ASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETALDYFLET 410

Query: 253 PMKPHAGAWGALL----------NACRMYKNTEMGELASRK 283
            ++ +   W  +L          N+ R+++  ++ E+   +
Sbjct: 411 EVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 450



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 123/264 (46%), Gaps = 3/264 (1%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   + Q +         VC + +I   AK G +D A  +      +D ++W  M+AG
Sbjct: 467 ELGEQIHSQIIKTNFQLNAYVC-SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 525

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y Q     +AL  F  M    ++ +EV + + +SAC  L AL +G+  H     +     
Sbjct: 526 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 585

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           +    ALV +YS+CG + ++   F   +  +   W +++ G   +G  E++L +F  M +
Sbjct: 586 LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 645

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            G+  N  TF S ++       +++G++   ++  + G +   E    L+ +Y + G + 
Sbjct: 646 EGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSIS 704

Query: 244 EALDVINKMPMKPHAGAWGALLNA 267
           +A     ++  K    +W A++NA
Sbjct: 705 DAEKQFLEVSTKNEV-SWNAIINA 727



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 106/234 (45%), Gaps = 7/234 (2%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           GD+  A K+FDEMPER    WN M+   A      E   LF  M   +V  NE +   VL
Sbjct: 94  GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 153

Query: 97  SACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
            AC     A D     H  I    L+ +  +   L+D+YS+ G ++ A   F G++ ++ 
Sbjct: 154 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 213

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W ++I GL+ N    +++ LF  M   G+ P    F SVL  C  +  +E G E    
Sbjct: 214 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHG 272

Query: 216 MRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +  + G     + Y C  LV LY   G L  A  + + M  +  A  +  L+N 
Sbjct: 273 LVLKLGFSS--DTYVCNALVSLYFHLGNLISAEHIFSNMSQRD-AVTYNTLING 323



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 85  VKLNEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           ++ N  ++  +L  C    G+LD+GR  H  I +  L     L   L D Y   G++  A
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M ER ++TW  +I  LA      +   LF  M    V PNE TF  VL  C   
Sbjct: 100 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 159

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            +  +  E   +     G+         L+DLY R G +D A  V + + +K H+ +W A
Sbjct: 160 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS-SWVA 218

Query: 264 LLNA 267
           +++ 
Sbjct: 219 MISG 222


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/420 (44%), Positives = 267/420 (63%), Gaps = 5/420 (1%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           + MF +M ++  ++WN M+  Y +     EA+ L+  M+    + + VS+ SVL AC   
Sbjct: 263 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDT 322

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
            AL  G+  H YIER +L   + L  AL+DMY+KCG + KA D F  MK R+V +WT++I
Sbjct: 323 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMI 382

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222
                +G G  ++ LFS ++ +G+ P+ + FV+ L  C   GL+EEGR  F  M   Y I
Sbjct: 383 SAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKI 442

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282
            P LEH  C+VDL GRAG++ EA   I  M M+P+   WGALL ACR++ +T++G LA+ 
Sbjct: 443 TPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAAD 502

Query: 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF 342
           KL +L  +  G YVLLSNIYA++  W+ V N+R IMK+KG+KK PG S +EV+R +H F 
Sbjct: 503 KLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFL 562

Query: 343 AGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFG 402
            GD +HP+ +EI   L  + +++K  GYV ++   ++D+EEE+KE  L  HSEK+AI F 
Sbjct: 563 VGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFA 622

Query: 403 LISLKE-----GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSC 457
           L++ KE        IRI KNLR+C DCH   K+IS++ +REII+RD NRFH F+ G CSC
Sbjct: 623 LMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 147/313 (46%), Gaps = 17/313 (5%)

Query: 22  DVVCQTAM----ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           D+ C +++    + A A   DV  ARK+FDE+PER+ I  N M+  Y   G   E + +F
Sbjct: 69  DLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF 128

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M   +V+ +  +   VL AC+  G +  GR  H    +  L  T+ +G  LV MY KC
Sbjct: 129 GTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKC 188

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +++A      M  R+V +W S++ G A N   + +LE+   M+   +  +  T  S+L
Sbjct: 189 GFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 248

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---M 254
               V     E   +   M  + G +  L  +  ++ +Y +     EA+++ ++M     
Sbjct: 249 PA--VSNTTTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN----IYAESKNWDR 310
           +P A +  ++L AC    +T    L  +    +E K     +LL N    +YA+    ++
Sbjct: 306 EPDAVSITSVLPAC---GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362

Query: 311 VINVRQIMKAKGV 323
             +V + MK++ V
Sbjct: 363 ARDVFENMKSRDV 375



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 2/157 (1%)

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           R  H  I    L+   +LG  L+  Y+   ++  A   F  + ERNV     +I     N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G   + +++F  M    VRP+  TF  VL+ C   G +  GR+   S  +  G+   L  
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK-VGLSSTLFV 177

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              LV +YG+ G L EA  V+++M  +    +W +L+
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/441 (42%), Positives = 278/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM- 80
           D+    A++   AKCG +  A  +F EM  +D I+WN ++ GY++   + EAL LF+L+ 
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +      +E ++  VL AC  L A D+GR  H YI RN       +  +LVDMY+KCG +
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  +  +++ +WT +I G  M+G G++++ LF+ M+QAG+  +E++FVS+L  C
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GLV+EG   F+ MR E  IEP +EHY C+VD+  R G L +A   I  MP+ P A  
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 670

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALL  CR++ + ++ E  + K+ ELE +N G YVL++NIYAE++ W++V  +R+ +  
Sbjct: 671 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 730

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G++K PGCS IE+   V+ F AGD ++P    IE  L ++  R+   GY   T   + D
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALID 790

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
            EE EKE+ LC HSEK+A+A G+IS   G  IR+ KNLRVC DCH++ K +SK+  REI+
Sbjct: 791 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 850

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NRFH FK+G CSC+G+W
Sbjct: 851 LRDSNRFHQFKDGHCSCRGFW 871



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D  C T ++   +KCGD+D A+ +F EM +R  +++ +M+AGYA+ G + EA+ LF  M+
Sbjct: 331 DRFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  +  ++ +VL+ C     LD+G+  H +I+ N L   + +  AL+DMY+KCG+M 
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGC 200
           +A   F  M+ +++ +W ++IGG + N    ++L LF+ L+++    P+E T   VL  C
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
             +   ++GRE H   MR  Y  +  + +   LVD+Y + G L
Sbjct: 510 ASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGAL 550



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 3/221 (1%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
             CGD+  A ++FDE+     + WN ++   A+ G    ++ LF  M    V+++  +  
Sbjct: 140 TNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFS 199

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            V  + + L ++  G   H +I ++      ++G +LV  Y K   ++ A   F  M ER
Sbjct: 200 CVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER 259

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           +V +W S+I G   NG  EK L +F  M  +G+  +  T VSV  GC    L+  GR  H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
              ++  +  E        L+D+Y + G LD A  V  +M 
Sbjct: 320 SIGVKACFSRED--RFCNTLLDMYSKCGDLDSAKAVFREMS 358



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 6/218 (2%)

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           +R     N  L  + + G    A+ L  +    D+  +  ++ SVL  C    +L  G+ 
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKE 115

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
              +I  N   +   LG+ L  MY+ CG++ +A   F  +K      W  ++  LA +G 
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
              S+ LF  M  +GV  +  TF  V +    +  V  G + H   ++  +G    + + 
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN- 234

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             LV  Y +  R+D A  V ++M  +    +W +++N 
Sbjct: 235 -SLVAFYLKNQRVDSARKVFDEMTERD-VISWNSIING 270


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/467 (41%), Positives = 288/467 (61%), Gaps = 6/467 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCG---DVDLARKMFDEMPERDPIAW 57
           MYA+ G L   +KVF+ +   D V  + +I A A  G   D   ARK+FD +  RD I+W
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISW 411

Query: 58  NAMLAGYAQCGKSREALHLFHLMQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           NAM+  Y Q G +  A+ +F  M     +K + V+ ++VL AC  LG L + +  H  I 
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS 471

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
            + L+  V +   L++MY++CG++ +A   F   KE+ V +WT+++   +  G   ++L+
Sbjct: 472 ESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALD 531

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M   GV+P++VT+ S+L  C   G +E+G  +F  M   + + P  +H+  +VDL 
Sbjct: 532 LFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLL 591

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GR+GRL +A +++  MP +P   AW   L ACR++   E+GE A+ ++ EL+  +   Y+
Sbjct: 592 GRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYI 651

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
            +SNIYA    W++V +VR+ M+ +G+KKLPG S IEVD ++HEF +G + HPR +EI  
Sbjct: 652 AMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICE 711

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLK-EGVPIRIV 415
            L  +   ++ AGYV +T  V++D+ E EKE  L  HSEK+AIAFGL+S +  G PIR+V
Sbjct: 712 ELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVV 771

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHF-KEGKCSCKGYW 461
           KNLRVC DCH  TK I+++  R+IIVRD NRFH F  +GKCSC  YW
Sbjct: 772 KNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 141/287 (49%), Gaps = 37/287 (12%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+V  TA+I+   KCG    AR++FD+M +RD ++WN M+  Y   G   EAL L+  
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQK 298

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           + +   K  + + VS+L AC+ + AL QGR  H +I    L   V + TALV+MY+KCG+
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE--------------------------- 172
           + +A   F  MK R+   W+++IG  A NG G+                           
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY 418

Query: 173 -------KSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
                   ++++F  M   AG++P+ VTF++VL  C  +G + E +    +   E  +E 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKA-LHAQISESELES 477

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            +     L+++Y R G L+EA  +      K    +W A++ A   Y
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERLFAAAKEKTVV-SWTAMVAAFSQY 523



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 131/240 (54%), Gaps = 3/240 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+++  A+ G V  A++MF  +  RD  +WNA++  ++Q G    AL +F  M+  DVK 
Sbjct: 147 ALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKC-DVKP 205

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  + ++V+S  +    L +GR  H  I  N     + + TAL++MY KCG+ ++A + F
Sbjct: 206 NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVF 265

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             MK+R++ +W  +IG   +NG   ++LEL+  +   G +  + TFVS+L  C  V  + 
Sbjct: 266 DKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +GR    S   E G++  +     LV++Y + G L+EA  V N M  +  A AW  L+ A
Sbjct: 326 QGR-LVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD-AVAWSTLIGA 383



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLF 77
           E D +   A+IS   KC  +  AR +F+ M   +R+ ++WNAM+A YAQ G S EAL L+
Sbjct: 39  ERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M +  +  + V+ VSVL AC+ L    QGR  H  +  + L    +L  ALV MY++ 
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARF 155

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A   F  ++ R+  +W +VI   + +G    +L +F  MK   V+PN  T+++V+
Sbjct: 156 GSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVI 214

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            G     ++ EGR+ H + +    G +  L     L+++YG+ G   EA +V +KM
Sbjct: 215 SGFSTPEVLPEGRKIHAEIVAN--GFDTDLVVATALINMYGKCGSSHEAREVFDKM 268



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 7/186 (3%)

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           D + + V+ ++VL +C+  G + +GR  H  I  +R +    +G AL+ MY KC ++  A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 144 MDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
              F  M  ++RNV +W ++I   A NG   ++L L+  M   G+  + VTFVSVL  C 
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +    +GRE  + +    G++ +      LV +Y R G + +A  +   +  +    +W
Sbjct: 122 SLA---QGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDET-SW 176

Query: 262 GALLNA 267
            A++ A
Sbjct: 177 NAVILA 182


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/454 (41%), Positives = 286/454 (62%), Gaps = 6/454 (1%)

Query: 9   GYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           G+C K  FD     +V   +A++    + G +D A+ +FD +  R+ ++WNA++AG+A+ 
Sbjct: 185 GFCVKCGFDS----NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARR 240

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
             + +AL LF  M     + +  S  S+  AC+  G L+QG+W H Y+ ++  K+    G
Sbjct: 241 SGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG 300

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
             L+DMY+K G+++ A   F  + +R+V +W S++   A +G G++++  F  M++ G+R
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIR 360

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           PNE++F+SVL  C   GL++EG  +++ M+++ GI P   HY  +VDL GRAG L+ AL 
Sbjct: 361 PNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
            I +MP++P A  W ALLNACRM+KNTE+G  A+  + EL+  + G +V+L NIYA    
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL 367
           W+    VR+ MK  GVKK P CS +E++  +H F A DE HP+  EI     E+  ++K 
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKE 539

Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDV 427
            GYV +T+ V+  ++++E+E  L  HSEK+A+AF L++   G  I I KN+RVC DCH  
Sbjct: 540 LGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTA 599

Query: 428 TKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            K+ SKV  REIIVRD NRFHHFK+G CSCK YW
Sbjct: 600 IKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 4/255 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +   I   D+V    +++  AKCG ++ ARK+F++MP+RD + W  +++GY+Q  +  +A
Sbjct: 86  ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L  F+ M       NE ++ SV+ A         G   H +  +      V +G+AL+D+
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 205

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y++ G M+ A   F  ++ RN  +W ++I G A     EK+LELF  M + G RP+  ++
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKM 252
            S+   C   G +E+G+     M +    E  +   G  L+D+Y ++G + +A  + +++
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSG--EKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323

Query: 253 PMKPHAGAWGALLNA 267
             K    +W +LL A
Sbjct: 324 -AKRDVVSWNSLLTA 337



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 27/218 (12%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++L  CT    L QGR  H +I ++  +  + +G  L++MY+KCG++ +A   F  M +R
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL-------RGCCVVGL- 205
           +  TWT++I G + +     +L  F+ M + G  PNE T  SV+       RGCC   L 
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 206 ---VEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              V+ G   FDS            H G  L+DLY R G +D+A  V + +  +    +W
Sbjct: 185 GFCVKCG---FDSN----------VHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-SW 230

Query: 262 GALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
            AL+        TE   EL    L +    +H +Y  L
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASL 268


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/448 (43%), Positives = 282/448 (62%), Gaps = 5/448 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEP---DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
            Y   G +   +KVFD +  P   DVV   A+++   + G V +AR++FD MP RD ++W
Sbjct: 174 FYGVCGDVAAMRKVFDEL--PLVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSW 231

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           + ++ GY + G+   AL +F  M +  VK NE ++V+ LSA   LG L+QG++ H  I+R
Sbjct: 232 STVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKR 291

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             + M++ LG ALVDMYSKCG++  A + F  M  R+V+ W S+I GLA +G G  +++L
Sbjct: 292 AGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQL 351

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F      G  P  +TFV VL  C   GLV+EGR +F  M  +YGIE  +EHYGC+VDL  
Sbjct: 352 FEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDLLS 411

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG + EA+++I  M + P    WG +L+AC+ +   ++G     KL+EL+  + G YVL
Sbjct: 412 RAGLVQEAIELIEGMHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELDPAHDGYYVL 471

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L++IYA++K WD V  VR++M  +G  K  G S++E    VH+F  GD  H    +I  M
Sbjct: 472 LASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMDHKDSVQIYNM 531

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L  I RRL  AGYV + + V++DI +EEK   +  HSE++AIA+G I ++ G PIRIVKN
Sbjct: 532 LCMIDRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKN 591

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRN 445
           L VC DCH+ +KM++KVF REIIVRD N
Sbjct: 592 LSVCGDCHEFSKMVTKVFGREIIVRDAN 619


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/467 (41%), Positives = 288/467 (61%), Gaps = 6/467 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCG---DVDLARKMFDEMPERDPIAW 57
           MYA+ G L   +KVF+ +   D V  + +I A A  G   D   ARK+FD +  RD I W
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICW 411

Query: 58  NAMLAGYAQCGKSREALHLFHLMQ-IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           NAM+  Y Q G +  A+ +F  M     +K + V+ ++VL AC  LG L + +  H  I 
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS 471

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
            + L+  V +   L++MY++CG++ +A   F   KE+ V +WT+++   +  G   ++L+
Sbjct: 472 ESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALD 531

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236
           LF  M   GV+P++VT+ S+L  C   G +E+G  +F  M   +G+ P  +H+  +VDL 
Sbjct: 532 LFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLL 591

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296
           GR+GRL +A +++  MP +P   AW   L ACR++   E+GE A+ ++ EL+  +   Y+
Sbjct: 592 GRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYI 651

Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
            +SNIYA    W++V +VR+ M+ +G+KKLPG S IEVD ++HEF +G + HPR +EI  
Sbjct: 652 AMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICE 711

Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLK-EGVPIRIV 415
            L  +   ++ AGYV +T  V++D+ E EKE  L  HSEK+AIAFGL+S +  G PIR+V
Sbjct: 712 ELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVV 771

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHF-KEGKCSCKGYW 461
           KNLRVC DCH  TK I+++  R+II+RD NRFH F  +GKCSC  YW
Sbjct: 772 KNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 37/287 (12%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+V  TA+I+   KCG    AR++FD+M +RD ++WN M+  Y Q G   EAL L+  
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQK 298

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           + +   K  + + VS+L AC+ + AL QGR  H +I    L   V + TALV+MY+KCG+
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE--------------------------- 172
           + +A   F  MK R+   W+++IG  A NG G+                           
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY 418

Query: 173 -------KSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
                   ++++F  M   AG++P+ VTF++VL  C  +G + E +    +   E  +E 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKA-LHAQISESELES 477

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            +     L+++Y R G L+EA  +      K    +W A++ A   Y
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERLFAAAKEKTVV-SWTAMVAAFSQY 523



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 130/240 (54%), Gaps = 3/240 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+++  A+ G V  A++MF  +  RD  +WNA++  ++Q G    AL +F  M+  D+K 
Sbjct: 147 ALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKC-DMKP 205

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  + ++V+S  +    L +GR  H  I  N     + + TAL++MY KCG+ ++A + F
Sbjct: 206 NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVF 265

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             MK+R++ +W  +IG    NG   ++LEL+  +   G +  + TFVS+L  C  V  + 
Sbjct: 266 DKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +GR    S   E G++  +     LV++Y + G L+EA  V N M  +  A AW  L+ A
Sbjct: 326 QGR-LVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD-AVAWSTLIGA 383



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLF 77
           E D +   A+IS   KC  +  AR +F+ M   +R+ ++WNAM+A YAQ G S EAL L+
Sbjct: 39  ERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M +  +  + V+ VSVL AC+ L    QGR  H  +  + L    +L  ALV MY++ 
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARF 155

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++  A   F  ++ R+  +W +VI   + +G    +L +F  MK   ++PN  T+++V+
Sbjct: 156 GSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVI 214

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            G     ++ EGR+ H + +    G +  L     L+++YG+ G   EA +V +KM
Sbjct: 215 SGFSTPEVLPEGRKIHAEIVAN--GFDSDLVVATALINMYGKCGSSHEAREVFDKM 268



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 7/186 (3%)

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           D + + V+ ++VL +C+  G + +GR  H  I  +R +    +G AL+ MY KC ++  A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 144 MDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
              F  M  ++RNV +W ++I   A NG   ++L L+  M   G+  + VTFVSVL  C 
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +    +GRE  + +    G++ +      LV +Y R G + +A  +   +  +    +W
Sbjct: 122 SLA---QGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDET-SW 176

Query: 262 GALLNA 267
            A++ A
Sbjct: 177 NAVILA 182


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 279/461 (60%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y   G L   ++VFD +   D+V   A++S C     ++ A  +F EMP R  + W  M
Sbjct: 322 LYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVM 381

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G AQ G   E L LF+ M++  ++  + +    +++C+ LG+LD G+  H  I +   
Sbjct: 382 ISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGH 441

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
             ++++G AL+ MYS+CG +  A   F  M   +  +W ++I  LA +G G ++++L+  
Sbjct: 442 DSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEK 501

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +  + P+ +TF+++L  C   GLV+EGR +FD+MR  YGI P  +HY  L+DL  RAG
Sbjct: 502 MLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAG 561

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
              EA +V   MP +P A  W ALL  C ++ N E+G  A+ +L+EL  +  G Y+ LSN
Sbjct: 562 MFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSN 621

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA    WD V  VR++M+ +GVKK PGCS IEV+  VH F   D  HP  + +   L +
Sbjct: 622 MYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQ 681

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   ++  GYV +T  V++D+E E+KE  L  HSEK+A+ +G++ L  G  IR+ KNLR+
Sbjct: 682 LVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRI 741

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+  K ISKV +REIIVRDR RFHHF+ G+CSC  YW
Sbjct: 742 CGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 131/276 (47%), Gaps = 37/276 (13%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I+   +  D+  AR++ + M +   +AWNAM++GY   G   EA  L   M    ++
Sbjct: 212 TTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQ 271

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK----MTVTLGTALVDMYSKCGNMNK 142
           L+E +  SV+SA ++ G  + GR  H Y+ R  ++      +++  AL+ +Y++CG + +
Sbjct: 272 LDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVE 331

Query: 143 AMDFF----------WG---------------------MKERNVYTWTSVIGGLAMNGAG 171
           A   F          W                      M  R++ TWT +I GLA NG G
Sbjct: 332 ARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFG 391

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
           E+ L+LF+ MK  G+ P +  +   +  C V+G ++ G++   S   + G +  L     
Sbjct: 392 EEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQ-LHSQIIQLGHDSSLSVGNA 450

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           L+ +Y R G ++ A  V   MP      +W A++ A
Sbjct: 451 LITMYSRCGLVEAADTVFLTMPYVDSV-SWNAMIAA 485



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 132/311 (42%), Gaps = 53/311 (17%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYA 65
           + Y + +FD I +PD+V  T M+SA +  G++ LA ++F+  P   RD +++NAM+  ++
Sbjct: 47  IPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFS 106

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC-------THLGAL--DQGRWAHVYIE 116
                  AL LF  M+      +  +  SVL A        TH   L  +  +W  + + 
Sbjct: 107 HSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVP 166

Query: 117 R--NRLKMTVTLGTALVDMYSKCGNMNKAMDFF------------W-------------- 148
              N L M+  +  A   + + C  M  A   F            W              
Sbjct: 167 SVLNAL-MSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLV 225

Query: 149 -------GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                  GM +     W ++I G    G  E++ +L   M   G++ +E T+ SV+    
Sbjct: 226 AARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAAS 285

Query: 202 VVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             GL   GR+    + R   ++P     L     L+ LY R G+L EA  V +KMP+K  
Sbjct: 286 NAGLFNIGRQVHAYVLRTV-VQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDL 344

Query: 258 AGAWGALLNAC 268
             +W A+L+ C
Sbjct: 345 V-SWNAILSGC 354


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/461 (39%), Positives = 279/461 (60%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G +   +K+F  +   D++    ++S     G ++ A+  F +MPE++ + W  M
Sbjct: 337 LYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVM 396

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G AQ G   +AL LF+ M++   + N+ +    ++AC+ LGAL+ GR  H  I     
Sbjct: 397 ISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGH 456

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
             T+++G A++ MY++CG +  A   F  M   +  +W S+I  L  +G G K++EL+  
Sbjct: 457 DSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQ 516

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M + G+ P+  TF++VL  C   GLVEEG  +F+SM   YGI P  +HY  ++DL+ RAG
Sbjct: 517 MLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAG 576

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           +  +A +VI+ MP +  A  W ALL  CR + N ++G  A+ KL +L  ++ G YVLLSN
Sbjct: 577 KFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSN 636

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +YA    W+ V   R++M+ +GVKK P CS  EV+ +VH F   D  HP    I   L +
Sbjct: 637 MYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEK 696

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           ++  +K  GY+ +T  V++D+E E KE  L  HSEK+A+AFGL+ L +G  +R+ KNLR+
Sbjct: 697 LNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRI 756

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH+  K +SKV  REI+VRD  RFHHFK G+CSC+ YW
Sbjct: 757 CGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 37/295 (12%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           +   +K+FD + + +    T +I+   + GD+  AR++ D M E+  IAWNAM++GY   
Sbjct: 208 MASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH 267

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK----MT 123
           G   +AL LF  M++  V+++E +  SV+SAC   G    G+  H YI +N L       
Sbjct: 268 GLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFL 327

Query: 124 VTLGTALVDMYSK-------------------------------CGNMNKAMDFFWGMKE 152
           +++G  L+ +Y K                                G M +A  FF  M E
Sbjct: 328 LSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPE 387

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           +N+ TWT +I GLA NG GE++L+LF+ MK  G  PN+  F   +  C V+G +E GR+ 
Sbjct: 388 KNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ- 446

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             +     G +  L     ++ +Y R G ++ A  +   MP      +W +++ A
Sbjct: 447 LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPV-SWNSMIAA 500



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 177/387 (45%), Gaps = 61/387 (15%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQC 67
           Y +K+FD I +PDV+ +T +I+A +  G++ +AR++F+E P   RD + +NAM+ GY+  
Sbjct: 66  YARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHM 125

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD-QGRWAHVYIERNRLKMTVTL 126
                A+ LF  M+  + + ++ +  SVLSA T +   + Q    H  + +  +++   +
Sbjct: 126 NDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAV 185

Query: 127 GTALVDMYSKCG---------NMNKAMDFFWGMKERNVYTWTSVIGGLAMNG-------- 169
             AL+ +Y KC           M  A   F  M +RN + WT++I G   NG        
Sbjct: 186 LNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREI 245

Query: 170 ----------------AG-------EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
                           +G       E +L LF  M+  GV+ +E T+ SV+  C   G  
Sbjct: 246 LDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFF 305

Query: 207 EEGRE-HFDSMRREYGIE-PWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
             G++ H   ++ E   +  +L   G  L+ LY + G++D A  +  +MP+K     W  
Sbjct: 306 LLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDII-TWNT 364

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL+    Y N    E A     ++  KN   + ++ +  A++   ++ + +   MK  G 
Sbjct: 365 LLSG---YVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGY 421

Query: 324 KK--------LPGCSV---IEVDREVH 339
           +         +  CSV   +E  R++H
Sbjct: 422 EPNDYAFAGAITACSVLGALENGRQLH 448


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/452 (41%), Positives = 277/452 (61%), Gaps = 1/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q    G  E D+    A++S  A+CG +  A   F+++  +D I+WN +++G+AQ G 
Sbjct: 539 HAQSYVSGYSE-DLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGY 597

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             +AL +F  M    ++ +  +  S +SA  ++  + QG+  H  I +      + +  A
Sbjct: 598 CEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNA 657

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+  Y+KCG++  A   F  M E+N  +W ++I G + +G G +++ LF  MKQ G  PN
Sbjct: 658 LITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPN 717

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            VTFV VL  C  VGLV +G  +F+SM +E+G+ P   HY C+VDL  RAG L  A   I
Sbjct: 718 HVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFI 777

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            +MP++P A  W  LL+AC ++KN E+GE A++ L+ELE ++   YVLLSN+YA S  WD
Sbjct: 778 EEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWD 837

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
                RQ+M+ +GVKK PG S IEV   VH F+ GD  HP  ++I   L E++++    G
Sbjct: 838 CRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIG 897

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           Y  +   ++ D+E+E+K+ T+  HSEK+AI FGL+SL + VPI ++KNLRVC DCH   K
Sbjct: 898 YFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIK 957

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            +SK+ NR IIVRD  RFHHF+ G CSCK YW
Sbjct: 958 FVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 4/246 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++ + A++     C D+  A +MF      + + WN ML  + +     E+  +F  MQ
Sbjct: 348 DMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQ 407

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           I  +  N+ +  S+L  CT +GALD G   H  + +   +  V + + L+DMY+K G ++
Sbjct: 408 IKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLD 467

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A      + E +V +WT++I G A +    ++L+ F  M   G++ + + F S +  C 
Sbjct: 468 TAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACA 527

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  + +GR+ H  S    Y  +  L     LV LY R GR+ EA     K+  K    +
Sbjct: 528 GIQALNQGRQIHAQSYVSGYSED--LSIGNALVSLYARCGRIKEAYLEFEKIDAKDSI-S 584

Query: 261 WGALLN 266
           W  L++
Sbjct: 585 WNGLIS 590



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 134/297 (45%), Gaps = 35/297 (11%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +    +I   AK G +  ARK+FD +  +D ++W AM++G++Q G   EA+HLF  M   
Sbjct: 148 IISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTA 207

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            +        SVLS CT +   D G   H  + +    +   +  ALV +YS+  N   A
Sbjct: 208 GIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSA 267

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M+ ++  ++ S+I GLA  G  + +LELF+ MK+  ++P+ VT  S+L  C   
Sbjct: 268 EKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASN 327

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY--------------------------- 236
           G + +G E   S   + GI   +   G L+DLY                           
Sbjct: 328 GALCKG-EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 237 ----GRAGRLDEALDVINKMPMK---PHAGAWGALLNACRMYKNTEMGELASRKLVE 286
               G+   L E+  +  +M +K   P+   + ++L  C      ++GE    ++++
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIK 443



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 6/295 (2%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG   + Q +  G      VC + +I   AK G +D A  +   + E D ++W A+++G
Sbjct: 432 DLGEQIHTQVIKTGFQFNVYVC-SVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ     EAL  F  M    ++ + +   S +SAC  + AL+QGR  H     +     
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSED 550

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           +++G ALV +Y++CG + +A   F  +  ++  +W  +I G A +G  E +L++F+ M +
Sbjct: 551 LSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNR 610

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           A +  +  TF S +     +  +++G++   +M  + G +  +E    L+  Y + G ++
Sbjct: 611 AKLEASFFTFGSAVSAAANIANIKQGKQ-IHAMIIKRGFDSDIEVSNALITFYAKCGSIE 669

Query: 244 EALDVINKMPMKPHAGAWGALLNACRM--YKNTEMGELASRKLVELETKNHGAYV 296
           +A     +MP K    +W A++       Y N  +      K V  E  NH  +V
Sbjct: 670 DARREFCEMPEKNDV-SWNAMITGYSQHGYGNEAVNLFEKMKQVG-EMPNHVTFV 722



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 3/243 (1%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           VC  A+++  ++  +   A K+F +M  +D +++N++++G AQ G S  AL LF  M+  
Sbjct: 250 VCN-ALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRD 308

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            +K + V++ S+LSAC   GAL +G   H Y+ +  +   + +  AL+D+Y  C ++  A
Sbjct: 309 YLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTA 368

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
            + F   +  NV  W  ++          +S  +F  M+  G+ PN+ T+ S+LR C  V
Sbjct: 369 HEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSV 428

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G ++ G E   +   + G +  +     L+D+Y + G+LD A  VI +   +    +W A
Sbjct: 429 GALDLG-EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTA-HVILRTLTEDDVVSWTA 486

Query: 264 LLN 266
           L++
Sbjct: 487 LIS 489



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 7/242 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G     V+C   ++      GD+D   K+F++MP R   +W+ +++G+ +   S   L L
Sbjct: 40  GFGNESVLCNK-LVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDL 98

Query: 77  FHLMQIHDVKLNEVSMVSVLSACT-HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           F  M   +V   E+S  SVL AC+ H   +      H  I  + L  +  +   L+ +Y+
Sbjct: 99  FSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYA 158

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           K G +  A   F  +  ++  +W ++I G + NG  E+++ LF  M  AG+ P    F S
Sbjct: 159 KNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSS 218

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMP 253
           VL GC  + L + G E   ++  +YG    LE Y C  LV LY R      A  V +KM 
Sbjct: 219 VLSGCTKIKLFDVG-EQLHALVFKYGSS--LETYVCNALVTLYSRMPNFVSAEKVFSKMQ 275

Query: 254 MK 255
            K
Sbjct: 276 SK 277



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 5/174 (2%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C + G+L + +  H  I +        L   LVD+Y   G+++  +  F  M  R+
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC--VVGLVEEGREH 212
           V +W  +I G        + L+LFS M +  V P E++F SVLR C    +G+    + H
Sbjct: 76  VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIH 135

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
              +       P + +   L+ LY + G +  A  V + +  K    +W A+++
Sbjct: 136 ARIICHGLLCSPIISN--PLIGLYAKNGLIISARKVFDNLCTKDSV-SWVAMIS 186


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/443 (45%), Positives = 277/443 (62%), Gaps = 4/443 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D     A++S   KCG+++   K+F  M E RD ++WN+M++GY       +A+ L   M
Sbjct: 472 DTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFM 531

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                +L+  +  ++LSAC  +  L++G   H    R  L+  V +G+ALVDMYSKCG +
Sbjct: 532 MQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRI 591

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A  FF  M  RNVY+W S+I G A +G GEK+L+LF+ M   G  P+ VTFV VL  C
Sbjct: 592 DYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSAC 651

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             VG VEEG EHF SM   Y + P +EH+ C+VDL GRAG+LDE  D IN MPMKP+   
Sbjct: 652 SHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLI 711

Query: 261 WGALLNAC--RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
           W  +L AC     +NTE+G  A+  L+ELE +N   YVLL+N+YA  + W+ V   R  M
Sbjct: 712 WRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAM 771

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K   VKK  GCS + +   VH F AGD+ HP  + I   L E++R+++ AGY+  T   +
Sbjct: 772 KEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYAL 831

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+E E KE+ L  HSEK+A+AF +++ +  +PIRI+KNLRVC DCH     ISK+  R+
Sbjct: 832 FDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQ 890

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I++RD NRFHHF++GKCSC  YW
Sbjct: 891 IVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 13/303 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +     VF+ + E D V   ++IS   +    + A +MF  MPE D ++WN++
Sbjct: 349 MYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSV 408

Query: 61  LAGYAQCGKS-REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +   +    S  +A+  F  M      L+ V+ +++LSA + L   +     H  + +  
Sbjct: 409 IGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYC 468

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLELF 178
           L     +G AL+  Y KCG MN+    F  M E R+  +W S+I G   N    K+++L 
Sbjct: 469 LSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLV 528

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY----GCLVD 234
             M Q G R +  TF ++L  C  V  +E G E         GI   LE        LVD
Sbjct: 529 WFMMQKGQRLDSFTFATILSACASVATLERGME-----VHACGIRACLESDVVVGSALVD 583

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHG 293
           +Y + GR+D A      MP++ +  +W ++++    + + E   +L +R +++ +  +H 
Sbjct: 584 MYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHV 642

Query: 294 AYV 296
            +V
Sbjct: 643 TFV 645



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 4/148 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DVV  +A++   +KCG +D A + F+ MP R+  +WN+M++GYA+ G   +AL LF  
Sbjct: 572 ESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTR 631

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV--YIERNRLKMTVTLGTALVDMYSKC 137
           M +     + V+ V VLSAC+H+G +++G + H     E  RL   V   + +VD+  + 
Sbjct: 632 MMLDGQPPDHVTFVGVLSACSHVGFVEEG-FEHFKSMSEVYRLSPRVEHFSCMVDLLGRA 690

Query: 138 GNMNKAMDFFWGMKER-NVYTWTSVIGG 164
           G +++  DF   M  + NV  W +V+G 
Sbjct: 691 GKLDEVGDFINSMPMKPNVLIWRTVLGA 718



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 24/259 (9%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++     +I+   + GD+  A+K+FDEM  R+ + W  +++GY Q GK  EA   F  M 
Sbjct: 133 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 192

Query: 82  IHDVKLNEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC-G 138
                 N  +  S L AC   G      G   H  I + R    V +   L+ MY  C  
Sbjct: 193 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 252

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV----RPNEV-TF 193
           + N A   F G+  RN  +W S+I   +  G    + +LFS M++ G+    +PN+  + 
Sbjct: 253 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSE 312

Query: 194 VSVLRGCCVVGLVEEGRE-----HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            SVL         EEGR      H   +R            G LV++Y ++G + +A  V
Sbjct: 313 FSVL---------EEGRRKGREVHAHVIRTGLNDNKVAIGNG-LVNMYAKSGAIADACSV 362

Query: 249 INKMPMKPHAGAWGALLNA 267
              M  K    +W +L++ 
Sbjct: 363 FELMVEKDSV-SWNSLISG 380



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 45/285 (15%)

Query: 22  DVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           DVV    +IS    C D  + AR +FD +  R+ I+WN++++ Y++ G +  A  LF  M
Sbjct: 236 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 295

Query: 81  QIHDVKL-----NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK-MTVTLGTALVDMY 134
           Q   +       +  S  SVL          +GR  H ++ R  L    V +G  LV+MY
Sbjct: 296 QKEGLGFSFKPNDAFSEFSVLEE-----GRRKGREVHAHVIRTGLNDNKVAIGNGLVNMY 350

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ----------- 183
           +K G +  A   F  M E++  +W S+I GL  N   E + E+FSLM +           
Sbjct: 351 AKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIG 410

Query: 184 ---------------------AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222
                                 G   + VTF+++L     + L  E      ++  +Y +
Sbjct: 411 ALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL-HEVSHQIHALVLKYCL 469

Query: 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
                    L+  YG+ G ++E   +  +M       +W ++++ 
Sbjct: 470 SDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 514


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 285/463 (61%), Gaps = 17/463 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   + VFD I   + +  TAM+S  AK G  + A ++F  +P ++  +W A+
Sbjct: 217 MYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTAL 276

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G+ Q GK  EA  +F  M+   V  L+ + + S++ AC +L A   GR  H       
Sbjct: 277 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH------- 329

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                  G AL+DMY+KC ++  A D F  M+ R+V +WTS+I G+A +G  EK+L L+ 
Sbjct: 330 -------GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 382

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   GV+PNEVTFV ++  C  VG VE+GRE F SM ++YGI P L+HY CL+DL GR+
Sbjct: 383 DMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 442

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
           G LDEA ++I+ MP  P    W ALL+AC+     +MG  +A   +   + K+   Y+LL
Sbjct: 443 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILL 502

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA +  W +V   R+ +    V+K PG S +EV +E   F+AG+ +HP   +I  +L
Sbjct: 503 SNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 562

Query: 359 GEISRRLKLA-GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            ++   +++  GYV +T+ +++D++E+EKE  L  HSE+ A+A+GL+    G PIRIVKN
Sbjct: 563 KKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKN 622

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           LRVC DCH V K IS++  REIIVRD  R+HHFK GKCSC  +
Sbjct: 623 LRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 26/247 (10%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VK 86
            +++   KCG    A ++FDEMP RD IAW ++L    Q   S + L +F  +     ++
Sbjct: 111 TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 170

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            ++    +++ AC +LG++D GR  H +   +       + ++LVDMY+KCG +N A   
Sbjct: 171 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 230

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++ +N  +WT+++ G A +G  E++LELF ++       N  ++ +++ G    G  
Sbjct: 231 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWTALISGFVQSGKG 286

Query: 207 EEGREHFDSMRREYG--IEPWL-------------------EHYGCLVDLYGRAGRLDEA 245
            E    F  MRRE    ++P +                    H   L+D+Y +   +  A
Sbjct: 287 LEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAA 346

Query: 246 LDVINKM 252
            D+ ++M
Sbjct: 347 KDIFSRM 353



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 8/204 (3%)

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
            L   +  H +I +  +     L   LV++Y KCG  + A+  F  M  R+   W SV+ 
Sbjct: 86  TLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 145

Query: 164 GL-AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYG 221
            L   N +G+      S+   +G+RP++  F ++++ C  +G ++ GR+ H   +  EY 
Sbjct: 146 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA 205

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELAS 281
            +  ++    LVD+Y + G L+ A  V + + +K +  +W A+++    Y  +   E A 
Sbjct: 206 NDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSG---YAKSGRKEEAL 259

Query: 282 RKLVELETKNHGAYVLLSNIYAES 305
                L  KN  ++  L + + +S
Sbjct: 260 ELFRILPVKNLYSWTALISGFVQS 283


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/434 (43%), Positives = 274/434 (63%), Gaps = 2/434 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++I+  A+ G ++ ARK F+ + E++ I++N      A+   S E+ +  H ++   V  
Sbjct: 389 SLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGA 446

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +   +LS    +G + +G   H  I ++     + +  AL+ MYSKCGN   A+  F
Sbjct: 447 SPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVF 506

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M  RNV TWTS+I G A +G   K+LELF  M + GV+PNEVT+++VL  C  VGL++
Sbjct: 507 NDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLID 566

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           E  +HF+SM   + I P +EHY C+VDL GR+G L EA++ IN MP    A  W   L +
Sbjct: 567 EAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGS 626

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR+++NT++GE A++K++E E  +   Y+LLSN+YA    WD V  +R+ MK K + K  
Sbjct: 627 CRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKET 686

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           G S IEVD +VH+F  GD +HP+  +I   L E++ ++K  GY+ NT+ V++D+E+E+KE
Sbjct: 687 GYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKE 746

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L +HSEK+A+A+ LIS  +  PIR+ KNLRVC DCH   K IS V  REI+VRD NRF
Sbjct: 747 QYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRF 806

Query: 448 HHFKEGKCSCKGYW 461
           HH K+GKCSC  YW
Sbjct: 807 HHIKDGKCSCNDYW 820



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 10/239 (4%)

Query: 17  GIHEPDVVCQTAMISACAKCG-DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           G  +  V    A+I    K G D+  AR +FD+M  ++ + W  M+  Y+Q G   +A+ 
Sbjct: 175 GYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVD 234

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  + + +   ++ ++ S+LSAC  L     G+  H ++ R+ L   V +G  LVDMY+
Sbjct: 235 LFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYA 294

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           K   +  +   F  M   NV +WT++I G   +   +++++LF  M    V PN  TF S
Sbjct: 295 KSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSS 354

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRAGRLDEALDVIN 250
           VL+ C  +     G++          I+  L    C    L+++Y R+G ++ A    N
Sbjct: 355 VLKACASLPDFGIGKQ-----LHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFN 408



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 5/232 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV     ++   AK   V+ +RK+F+ M   + ++W A+++GY Q  + +EA+ LF  M 
Sbjct: 282 DVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNML 341

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  N  +  SVL AC  L     G+  H    +  L     +G +L++MY++ G M 
Sbjct: 342 HGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTME 401

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL-MKQAGVRPNEVTFVSVLRGC 200
            A   F  + E+N+ ++ +       N     S E F+  ++  GV  +  T+  +L G 
Sbjct: 402 CARKAFNILFEKNLISYNTAADA---NAKALDSDESFNHEVEHTGVGASPFTYACLLSGA 458

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             +G + +G E   ++  + G    L     L+ +Y + G  + AL V N M
Sbjct: 459 ACIGTIVKG-EQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDM 509



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 137/272 (50%), Gaps = 14/272 (5%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAML 61
           ELG L +  K+ D     D V   ++I+  +KCGD + A  +F  M   +RD ++W+A++
Sbjct: 56  ELGKLLH-HKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAII 114

Query: 62  AGYAQCG-KSREALHLFHLMQI--HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           + +A    +SR  L   H++Q   + +  NE    ++L +C++      G     ++ + 
Sbjct: 115 SCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKT 174

Query: 119 -RLKMTVTLGTALVDMYSKCG-NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
                 V +G AL+DM++K G ++  A   F  M+ +N+ TWT +I   +  G  + +++
Sbjct: 175 GYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVD 234

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVD 234
           LF  +  +   P++ T  S+L  C  +     G++ H   +R     + ++   GC LVD
Sbjct: 235 LFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFV---GCTLVD 291

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +Y ++  ++ +  + N M +  +  +W AL++
Sbjct: 292 MYAKSAAVENSRKIFNTM-LHHNVMSWTALIS 322



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKE 152
           +L AC   G L+ G+  H  +  + L +   L  +L+ +YSKCG+   A+  F   G  +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG---VRPNEVTFVSVLRGCCVVGLVEEG 209
           R++ +W+++I   A N    ++L  F  M Q     + PNE  F ++LR C        G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAG-RLDEALDVINKMPMK 255
              F  + +    +  +     L+D++ + G  +  A  V +KM  K
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHK 211


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 280/448 (62%), Gaps = 5/448 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEP---DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
            Y   G +   +KVFD +  P   DVV   A+++   + G V +AR++FD MP RD ++W
Sbjct: 176 FYGVCGDVAAMRKVFDEL--PIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSW 233

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           + ++ GY + G+   AL +F  M    VK NE ++V+ LSA   LG L+QG++ H  ++R
Sbjct: 234 STVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKR 293

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             + M+V LG AL+DMYSKCG++  A + F  M  R+V+ W S+I GLA +G G  +++L
Sbjct: 294 VGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQL 353

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F      G  P  +TFV VL  C   GLV+EGR +F  M  +Y IE  +EHYGC+VDL  
Sbjct: 354 FEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLS 413

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG + EA+++I  M + P    WG +L+AC+ +   ++G     KL+EL+  + G YVL
Sbjct: 414 RAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVL 473

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L++IYA++K WD V  VR++M  +G  K  G S++E    VH+F  GD  H     I  M
Sbjct: 474 LASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNM 533

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L  I+RRL  AGYV + + V++DI +EEK   +  HSE++AIA+G I ++ G PIRIVKN
Sbjct: 534 LCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKN 593

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRN 445
           L VC DCH+ +KM++KVF REI+VRD N
Sbjct: 594 LSVCGDCHEFSKMVTKVFGREIVVRDAN 621


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/443 (41%), Positives = 283/443 (63%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+ +V   +A++   +KC  +  A  +F  MP+++ I+W AML GY Q G S EA+ +F 
Sbjct: 301 HKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFF 360

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ + V+ ++ ++ SV+S+C +L +L++G   H     + L   +T+  AL+ +Y KCG
Sbjct: 361 EMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCG 420

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +   +   F  M  R+  +WT+++ G A  G   +++ LF  M   G++P+ VTF+ VL 
Sbjct: 421 STENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLS 480

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVE+G ++F+SM +E+GI P ++H  C++DL GRAGRL+EA + IN MP  P  
Sbjct: 481 ACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDV 540

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL++CR++ + E+G+ A+  L+ LE +N  +YVLLS++YA    WD+V  +R+ M
Sbjct: 541 VGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGM 600

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + K V+K PG S I+   +VH F A D++ P   +I   L +++ ++   GYV + + V+
Sbjct: 601 RDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVL 660

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+EE EK   L  HSEK+AIAFGLI +  G+PIR++KNLRVC DCH+ TK ISK+  RE
Sbjct: 661 HDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQRE 720

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD  RFH FK+G CSC  +W
Sbjct: 721 ILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 151/265 (56%), Gaps = 2/265 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +LG +   ++ FD + E +VV    MI+   +CG ++ ++++F  + ERD I+W  M
Sbjct: 182 MYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIM 241

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G  Q G  REAL +F  M++    +++ +  SVL+AC  L AL +G+  H Y+ R   
Sbjct: 242 ITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDH 301

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K  V +G+ALVDMYSKC ++  A   F  M ++NV +WT+++ G   NG  E+++++F  
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFE 361

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++ GV P++ T  SV+  C  +  +EEG + F       G+  ++     L+ LYG+ G
Sbjct: 362 MQRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCG 420

Query: 241 RLDEALDVINKMPMKPHAGAWGALL 265
             + +  +  +M ++    +W ALL
Sbjct: 421 STENSHRLFTEMNIRDEV-SWTALL 444



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 36/297 (12%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +LG L Y   VFD I +P++     ++S  +K G +   +++F+ MP RD ++WN  +
Sbjct: 50  YYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAI 109

Query: 62  AGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +GYA  G   +A+ ++ LM +   + LN ++  ++L  C+    +D GR  +  I +   
Sbjct: 110 SGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGF 169

Query: 121 KMTVTLGTALVDMYSK-------------------------------CGNMNKAMDFFWG 149
              V +G+ LVDMY+K                               CG + ++   F G
Sbjct: 170 GSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCG 229

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           +KER+  +WT +I GL  NG   ++L++F  M+ AG   ++ TF SVL  C  +  + EG
Sbjct: 230 LKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEG 289

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++ H   +R ++    ++     LVD+Y +   +  A  V  +MP K +  +W A+L
Sbjct: 290 KQIHAYVIRTDHKDNVFVG--SALVDMYSKCRSIKSAETVFKRMPQK-NVISWTAML 343


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 288/442 (65%), Gaps = 1/442 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D++ Q  +I   A CG+++ A +MF+ +  +D ++W +M++ Y   G + EAL +F+LM
Sbjct: 346 SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLM 405

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   V+ + +++VS+LSA   L AL++G+  H +I R    +  +   +LVDMY+ CG++
Sbjct: 406 KETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSL 465

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F   + +++  WT++I    M+G G+ ++ELFS+M+   + P+ +TF+++L  C
Sbjct: 466 ENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYAC 525

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              GL+ EG+   ++M+ +Y +EPW EHY CLVDL GRA  L+EA   +  M ++P A  
Sbjct: 526 SHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEV 585

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W A L ACR++ N ++GE+A++KL++L+  + G+YVL+SN++A S  W  V  VR  MK 
Sbjct: 586 WCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKG 645

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL-KLAGYVANTNPVMY 379
            G+KK PGCS IEV  +VH F   D++HP   +I   L +I+ +L K  GYV  T  V++
Sbjct: 646 GGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLH 705

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           ++ +EEK   L  HSE++AIA+GL+S  EG PIRI KNLRVC DCH   K++SK F RE+
Sbjct: 706 NVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFEREL 765

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD +RFHHF++G CSC  +W
Sbjct: 766 IVRDASRFHHFEDGVCSCGDFW 787



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLF 77
           ++  V    +++S  AKC D+  ARK+FD M ER D ++WN++++ Y+  G+  EAL LF
Sbjct: 41  YDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLF 100

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             MQ   V  N  ++V+ L AC        G   H  I ++   + V +  ALV M+ + 
Sbjct: 101 REMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRF 160

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G M+ A   F  + E++  TW S+I G   NG   ++L+ F  ++ A ++P+EV+ +S+L
Sbjct: 161 GKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISIL 220

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHY----GCLVDLYGRAGRLDEALDVINKMP 253
                +G +  G+E        Y ++ WL+        L+D+Y +   +  A  V +KM 
Sbjct: 221 AASGRLGYLLNGKE-----IHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMI 275

Query: 254 MK 255
            K
Sbjct: 276 NK 277



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 130/246 (52%), Gaps = 5/246 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+++   + G +  A ++FDE+ E+D I WN+M+AG+ Q G   EAL  F  +Q
Sbjct: 146 DVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQ 205

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             ++K +EVS++S+L+A   LG L  G+  H Y  +N L   + +G  L+DMYSKC  + 
Sbjct: 206 DANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVA 265

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  +++ +WT+VI   A N    ++L+L   ++  G+  + +   S L  C 
Sbjct: 266 YAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS 325

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  +   +E H  +++R  G+   +     ++D+Y   G ++ A  +   +  K    +
Sbjct: 326 GLRCLSHAKEVHGYTLKR--GLSDLMMQ-NMIIDVYADCGNINYATRMFESIKCKD-VVS 381

Query: 261 WGALLN 266
           W ++++
Sbjct: 382 WTSMIS 387



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 5/188 (2%)

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++  V  +  +   VL AC  +  + +G   H  I +      V +  +LV MY+KC +
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 140 MNKAMDFFWGMKERN-VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +  A   F  M ERN V +W S+I   ++NG   ++L LF  M++AGV  N  T V+ L+
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C      + G E H   ++    ++ ++ +   LV ++ R G++  A  + +++  K +
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVAN--ALVAMHVRFGKMSYAARIFDELDEKDN 178

Query: 258 AGAWGALL 265
              W +++
Sbjct: 179 I-TWNSMI 185


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/489 (41%), Positives = 298/489 (60%), Gaps = 33/489 (6%)

Query: 3   AELGCLGYCQKVFDGIHE--------PDVVCQTAMISACAKCGDVDLARKMFDEMPERDP 54
           AELGC+     V + I           DVV  TA++   A+CG++ LAR++FD +  ++ 
Sbjct: 282 AELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNV 341

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIH------DVKLNEVSMVSVLSACTHLGALDQG 108
           + W+AM+AGY Q     EAL LF  M +       +VK N V++VSV++AC+ LGA    
Sbjct: 342 VCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA 401

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLA 166
              H Y     L     + +AL+DM +KCG++      F  M E  R V +W+S+IG   
Sbjct: 402 SMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEG 461

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
           ++G G+++LELFS M+  G  PNE+T++SVL  C   GLVE+G+  F+SM ++YG+ P  
Sbjct: 462 IHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTG 521

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           +HY CLVDL GRAG LDEA +VI  MP+K     WG+LL AC ++ N ++GE+  +K++ 
Sbjct: 522 KHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILS 581

Query: 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE 346
           L++ + G +VLL+N+Y ++  WD V+ +R  ++  G++K+PG S IE+  EV+ F A D 
Sbjct: 582 LDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDR 641

Query: 347 THPRYNEIEVMLGEISRRL-KLAGYVANTNPVMYDIEEEEKEDTL--CK-HSEKVAIAFG 402
           +HP    I   L  +  R+ K A YV  T     ++E+ +    +  CK HSE++AIAFG
Sbjct: 642 SHPESEMIYKELDGLDERVRKAAKYVTETG---LNVEDGDIAGLILRCKYHSERLAIAFG 698

Query: 403 LI----------SLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
           LI          SL+   PIRI KNLRVC DCH  TK++SKV +RE+IVRD +RFHHF++
Sbjct: 699 LIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRD 758

Query: 453 GKCSCKGYW 461
           G CSC  YW
Sbjct: 759 GFCSCGDYW 767



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 127/264 (48%), Gaps = 21/264 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSREALHLFHL 79
           D     A++ A  KCG    A ++FDEMPE   D ++W A+++ Y+  G   EA   F  
Sbjct: 86  DRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGR 145

Query: 80  MQ-------IHDVKLNEVSMVSVLSACT---HLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           M+            ++ VS+ +++SAC        L +G   H  + +    ++  LG +
Sbjct: 146 MRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNS 205

Query: 130 LVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-- 185
           +V MYS C ++  A   F G+  ++R+V +W S+I G  +NG  E++L  F  M   G  
Sbjct: 206 MVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTS 265

Query: 186 -VRPNEVTFVSVLRGCCVVGLVEEG---REHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
            V PN VT +++L+ C  +G VE      E+  S      +   +     L+D++ R G 
Sbjct: 266 AVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN 325

Query: 242 LDEALDVINKMPMKPHAGAWGALL 265
           L  A ++ + +  K +   W A++
Sbjct: 326 LALAREIFDGVEGK-NVVCWSAMI 348



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 25/237 (10%)

Query: 48  EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107
            +  +D   WN+++A  A     + AL  F  MQ H V  N  +  ++L AC  L  L  
Sbjct: 12  SISHKDTFHWNSLIAKNAT-QNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER--NVYTWTSVIGGL 165
               H Y+ R  L        ALVD Y KCG+   A   F  M E   +V +WT++I   
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 166 AMNGAGEKSLELFSLMK-QAGVRPNEVTFVSV-----LRGCCVVGLVEEGREHFDSMRRE 219
           + NG  +++ + F  M+   G   +E   V V     L   C VG         + +RR 
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS------NCLRRG 184

Query: 220 YGIEPWLEHYG---------CLVDLYGRAGRLDEALDVINKMPMKPH-AGAWGALLN 266
             +   +  YG          +V +Y     +  A  V N +P++     +W +L++
Sbjct: 185 SAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/449 (44%), Positives = 279/449 (62%), Gaps = 13/449 (2%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PDV   T ++ + AKCGD+  ARK+FDEM  RD  +WNA+LAG AQ  +   AL LFH +
Sbjct: 151 PDVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALFHRL 210

Query: 81  QIHDVKL------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
                +L      NEV++V+ LSAC  +G+L  G + H +  +  +   V +  AL+DMY
Sbjct: 211 VGSFRELPPREEPNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNGNVRVCNALIDMY 270

Query: 135 SKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           SKCG+++ A++ F  +K  +R + ++ + I  ++M+G G  +L LF  M    + P+EVT
Sbjct: 271 SKCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMPTF-IEPDEVT 329

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +++VL GC   GLV++G   F SMR    + P ++HYG +VDL GRAGRL EA D I  M
Sbjct: 330 YIAVLCGCNHAGLVDDGLRVFHSMR----VLPNVKHYGAVVDLLGRAGRLAEAYDTIVSM 385

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P       W  LL A + + + E+ ELA+ KL EL +   G YVLLSN+YA    W  V 
Sbjct: 386 PFPADIVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGDYVLLSNVYASKARWADVR 445

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR  M++  V+K+PG S  E+   +H+F  GD+ HPR+ EI   L EI  R+   GY  
Sbjct: 446 RVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRWQEIYRALEEIVSRIGELGYEP 505

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
            T+ V++DI EEEK+  L  HSEK+AIAFGLI+   G  +R++KNLR C DCH V K+IS
Sbjct: 506 ETSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNLRTCGDCHVVAKLIS 565

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           K + R II+RDR RFH F++G+CSCK YW
Sbjct: 566 KAYGRVIIIRDRARFHQFEDGQCSCKDYW 594


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/459 (39%), Positives = 279/459 (60%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G +   +++FD ++  DVV    ++S     G +D A ++F  MP ++ ++W  M
Sbjct: 346 LYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVM 405

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY   G S +AL LF+ M+  DVK  + +    ++AC  LGAL  GR  H ++ +   
Sbjct: 406 VSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGF 465

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           + + + G AL+ MY+KCG +N A   F  M   +  +W ++I  L  +G G ++LELF  
Sbjct: 466 EASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQ 525

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   G+ P+ ++F+++L  C   GLV+EG  +F+SM+R++GI P  +HY  L+DL GR+G
Sbjct: 526 MVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSG 585

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           R+ EA D+I  MP +P    W A+L+ CR   + E G  A+ +L  +  ++ G Y+LLSN
Sbjct: 586 RIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSN 645

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            Y+ +  W     VR++M+ +GVKK PGCS IEV  ++H F  GD  HP   E+   L  
Sbjct: 646 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEV 705

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           I  R++  GYV +T  V++D+E  EKE  L  HSEK+A+ FGL+ L  G  + ++KNLR+
Sbjct: 706 IGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRI 765

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKG 459
           C DCH     +SK   REI+VRD  RFHHFK+G+CSC+G
Sbjct: 766 CGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCEG 804



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 37/292 (12%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +KV D + + D +  T M+    + GDV+ AR +F+E+  +  + WNAM++GY Q G  
Sbjct: 220 ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMC 279

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM----TVTL 126
            +A  LF  M    V L+E +  SVLSAC + G    G+  H  I R +        + +
Sbjct: 280 ADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPV 339

Query: 127 GTALVDMYSKCGN-------------------------------MNKAMDFFWGMKERNV 155
             ALV +YSK G                                ++KA++ F  M  +N 
Sbjct: 340 NNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKND 399

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W  ++ G    G  E +L+LF+ M+   V+P + T+   +  C  +G ++ GR+   +
Sbjct: 400 LSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ-LHA 458

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              + G E        L+ +Y + G +++A  V   MP    + +W A+++A
Sbjct: 459 HLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISA 509



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 140/340 (41%), Gaps = 46/340 (13%)

Query: 27  TAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIH 83
           T++++A A  G +  A   FD +P   RD +  NAM++ +A+   +  A+ +FH L+   
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 84  DVKLNEVSMVSVLSAC--THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC---- 137
            ++ ++ S  +++SA    H  A       H  + ++     +++  AL+ +Y KC    
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 138 ------------------------------GNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
                                         G++N A   F  +  +    W ++I G   
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP-- 224
           +G    + ELF  M    V  +E TF SVL  C   G    G+  H   +R +    P  
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
            L     LV LY + G++  A  + + M +K    +W  +L+    Y ++   + A    
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSG---YIDSGCLDKAVEVF 391

Query: 285 VELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
             +  KN  +++++ + Y      +  + +   M+A+ VK
Sbjct: 392 KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVK 431


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/452 (43%), Positives = 292/452 (64%), Gaps = 13/452 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLF- 77
           E D     ++I   A CG ++ ARK+FD M E R+ ++WN M+  YA+ G     L +F 
Sbjct: 117 ELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFC 176

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTLGTALVDMY 134
            +M++++      +M SV+ AC  LG+L  G W H ++ +     +   V + T LVDMY
Sbjct: 177 EMMKVYEPDC--YTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMY 234

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTF 193
            KCG++  A   F GM  R+V +W S+I G A++G  + +L+ F  ++K   + PN +TF
Sbjct: 235 CKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITF 294

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           V VL  C   G+V+EG  +F+ M +EY +EP L HYGCLVDLY RAG + EAL+V+++MP
Sbjct: 295 VGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMP 354

Query: 254 MKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKNWDRV 311
           +KP A  W +LL+AC + + + E+ E  ++++ E   +   GAYVLLS +YA +  W+ V
Sbjct: 355 IKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDV 414

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             +R++M  KGV K PGCS+IE++   HEFFAGD  HP+  +I   + EI  +L+  GY+
Sbjct: 415 GLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYL 474

Query: 372 ANTN--PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
            + +  P++ +I E  K++T+  HSE++AIAFGL++ K  +PIR+ KNLRVC DCH VTK
Sbjct: 475 PDYSGAPLIDEINEG-KQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTK 533

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +IS+++N EIIVRDR RFHHFK+G CSC  YW
Sbjct: 534 LISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 53  DPIAWNAMLAGYAQCGKSRE-ALHLFHLM---QIHDVKLNEVSMVSVLSACTHLGALDQG 108
           +   WN ++  Y++    ++ A+ L+  +   Q +++  ++ +   VL AC +L +L +G
Sbjct: 45  NSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEG 104

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAM 167
           +  H ++ +   ++   +  +L+  Y+ CG +  A   F  M E RNV +W  +I   A 
Sbjct: 105 KQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAK 164

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPW 225
            G  +  L +F  M +    P+  T  SV+R C  +G +  G     F   + +  +   
Sbjct: 165 VGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCD 223

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +    CLVD+Y + G L+ A  V   M  +    +W +++
Sbjct: 224 VLVNTCLVDMYCKCGSLEIAKQVFEGMSYRD-VSSWNSII 262


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/440 (42%), Positives = 274/440 (62%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T+++   AK G +D+A ++F  M  R+ ++W+AM++G+AQ G+S EAL LF  MQ
Sbjct: 243 DVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQ 302

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  ++VS L AC+++G L  GR  H +I R R      LGTA +DMYSKCG++ 
Sbjct: 303 ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLA 361

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +R++  W ++I     +G G+ +L LF  M + G+RP+  TF S+L    
Sbjct: 362 SAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG+  F  M   + I P  +HY CLVDL  R+G ++EA D++  M  +P    W
Sbjct: 422 HSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIW 481

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ C   K  E+GE  +  ++EL+  + G   L+SN+YA +K WD+V  VR++MK  
Sbjct: 482 VALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDS 541

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G KK+PGCS IE+    H F   D++HP+  EI   + ++   ++  GY+  T  V +D+
Sbjct: 542 GSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDL 601

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE KE  L  HSE++AIAFGL++   G  + I+KNLRVC DCHD  K ISK+ +REI+V
Sbjct: 602 EEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVV 661

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC+ YW
Sbjct: 662 RDAKRFHHFKDGVCSCRDYW 681



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           + FD  ++ DV   ++++   A+ G +  A K+F  MP RD + W+ M+AG+   G+  +
Sbjct: 133 RAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLD 192

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A+ ++  M+   VK +EV M+ V+ ACT    +  G   H ++ R+ ++M V   T+LVD
Sbjct: 193 AIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+K G ++ A   F  M  RN  +W+++I G A NG  +++L LF  M+ +G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            VS L  C  +G ++ GR     + R +     L      +D+Y + G L  A  + N +
Sbjct: 313 LVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAA--IDMYSKCGSLASAQMLFNMI 370

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLL------SNIYAES 305
             +     W A++  C  +   +      +++ E   + +H  +  L      S +  E 
Sbjct: 371 SDRDLI-LWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEG 429

Query: 306 KNW-DRVINVRQIMKAK 321
           K W  R++N  +I  A+
Sbjct: 430 KLWFGRMVNHFKITPAE 446



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 13/222 (5%)

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           +++ G    AL +F  +     + +  +    LSAC  LG L  G            K  
Sbjct: 84  HSRRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V + ++L+ +Y++ G M  A+  F  M  R+  TW++++ G    G    +++++  M++
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV+ +EV  + V++ C     V  G      + R +G+   +     LVD+Y + G LD
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 244 EALDVINKMPMKPHAGAWGALLN----------ACRMYKNTE 275
            A  V   M  +    +W A+++          A R+++N +
Sbjct: 262 VACRVFGLMVHRNDV-SWSAMISGFAQNGQSDEALRLFRNMQ 302


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/489 (41%), Positives = 298/489 (60%), Gaps = 33/489 (6%)

Query: 3   AELGCLGYCQKVFDGIHE--------PDVVCQTAMISACAKCGDVDLARKMFDEMPERDP 54
           AELGC+     V + I           DVV  TA++   A+CG++ LAR++FD +  ++ 
Sbjct: 282 AELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNV 341

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIH------DVKLNEVSMVSVLSACTHLGALDQG 108
           + W+AM+AGY Q     EAL LF  M +       +VK N V++VSV++AC+ LGA    
Sbjct: 342 VCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA 401

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLA 166
              H Y     L     + +AL+DM +KCG++      F  M E  R V +W+S+IG   
Sbjct: 402 SMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEG 461

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
           ++G G+++LELFS M+  G  PNE+T++SVL  C   GLVE+G+  F+SM ++YG+ P  
Sbjct: 462 IHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTG 521

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286
           +HY CLVDL GRAG LDEA +VI  MP+K     WG+LL AC ++ N ++GE+  +K++ 
Sbjct: 522 KHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILS 581

Query: 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE 346
           L++ + G +VLL+N+Y ++  WD V+ +R  ++  G++K+PG S IE+  EV+ F A D 
Sbjct: 582 LDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDR 641

Query: 347 THPRYNEIEVMLGEISRRL-KLAGYVANTNPVMYDIEEEEKEDTL--CK-HSEKVAIAFG 402
           +HP    I   L  +  R+ K A YV  T     ++E+ +    +  CK HSE++AIAFG
Sbjct: 642 SHPESEMIYKELDGLDERVRKAAKYVTETG---LNVEDGDIAGLIXRCKYHSERLAIAFG 698

Query: 403 LI----------SLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
           LI          SL+   PIRI KNLRVC DCH  TK++SKV +RE+IVRD +RFHHF++
Sbjct: 699 LIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRD 758

Query: 453 GKCSCKGYW 461
           G CSC  YW
Sbjct: 759 GFCSCGDYW 767



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 127/264 (48%), Gaps = 21/264 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSREALHLFHL 79
           D     A++ A  KCG    A ++FDEMPE   D ++W A+++ Y+  G   EA   F  
Sbjct: 86  DRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGR 145

Query: 80  MQ-------IHDVKLNEVSMVSVLSACT---HLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           M+            ++ VS+ +++SAC        L +G   H  + +    ++  LG +
Sbjct: 146 MRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNS 205

Query: 130 LVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-- 185
           +V MYS C ++  A   F G+  ++R+V +W S+I G  +NG  E++L  F  M   G  
Sbjct: 206 MVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTS 265

Query: 186 -VRPNEVTFVSVLRGCCVVGLVEEG---REHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
            V PN VT +++L+ C  +G VE      E+  S      +   +     L+D++ R G 
Sbjct: 266 AVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN 325

Query: 242 LDEALDVINKMPMKPHAGAWGALL 265
           L  A ++ + +  K +   W A++
Sbjct: 326 LALAREIFDGVEGK-NVVCWSAMI 348



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 25/237 (10%)

Query: 48  EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107
            +  +D   WN+++A  A     + AL  F  MQ H V  N  +  ++L AC  L  L  
Sbjct: 12  SISHKDTFHWNSLIAKNAT-QNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER--NVYTWTSVIGGL 165
               H Y+ R  L        ALVD Y KCG+   A   F  M E   +V +WT++I   
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 166 AMNGAGEKSLELFSLMK-QAGVRPNEVTFVSV-----LRGCCVVGLVEEGREHFDSMRRE 219
           + NG  +++   F  M+   G   +E   V V     L   C VG         + +RR 
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS------NCLRRG 184

Query: 220 YGIEPWLEHYG---------CLVDLYGRAGRLDEALDVINKMPMKPH-AGAWGALLN 266
             +   +  YG          +V +Y     +  A  V N +P++     +W +L++
Sbjct: 185 SAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/435 (42%), Positives = 272/435 (62%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +I +  KC  +  A ++F+E    D IA  +M+   +QC     A+ LF  M    ++
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +   + S+L+AC  L A +QG+  H ++ + +       G ALV  Y+KCG++  A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + ER V +W+++IGGLA +G G+++LELF  M   G+ PN +T  SVL  C   GLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +E + +F+SM+  +GI+   EHY C++DL GRAG+LD+A++++N MP + +A  WGALL 
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLG 682

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           A R++K+ E+G+LA+ KL  LE +  G +VLL+N YA +  W+ V  VR++MK   +KK 
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           P  S IEV  +VH F  GD++HP   EI   L E+   +  AG+V N +  ++D++  EK
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEK 802

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSE++A+AF L+S   G PIR+ KNLR+C DCH   K ISK+ +REII+RD NR
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 862

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF++G CSC  YW
Sbjct: 863 FHHFRDGTCSCGDYW 877



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 2/232 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           DV    A+++     G +D AR++F+E   ER+ ++WN +++ Y +  +  +A+ +F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
               ++  E     V++ACT    ++ GR  H  + R      V    ALVDMY K G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  M + +V +W ++I G  +NG   +++EL   MK +G+ PN  T  S+L+ C
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
              G  + GR+    M +           G LVD+Y +   LD+A  V + M
Sbjct: 314 SGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDARKVFDWM 364



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 6/241 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +IS  +KC     AR++FDE+P+   ++W++++  Y+  G  R A+  FH M+   V  N
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF- 147
           E ++  VL  C     L  G   H           V +  ALV MY   G M+ A   F 
Sbjct: 103 EFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
               ERN  +W  ++     N     ++++F  M  +G++P E  F  V+  C     +E
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            GR+   +M    G +  +     LVD+Y + GR+D A  +  KMP      +W AL++ 
Sbjct: 220 AGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 268 C 268
           C
Sbjct: 278 C 278



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 98/193 (50%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV    A++    K G VD+A  +F++MP+ D ++WNA+++G    G    A+ L  
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   +  N  ++ S+L AC+  GA D GR  H ++ +        +G  LVDMY+K  
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A   F  M  R++    ++I G +  G  +++L LF  +++ G+  N  T  +VL+
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 199 GCCVVGLVEEGRE 211
               +      R+
Sbjct: 413 STASLEAASTTRQ 425



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 5/275 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D      ++   AK   +D ARK+FD M  RD I  NA+++G +  G+  EAL LF+ 
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++   + +N  ++ +VL +   L A    R  H    +        +   L+D Y KC  
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F      ++   TS+I  L+    GE +++LF  M + G+ P+     S+L  
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++R++  + +  +   LV  Y + G +++A    + +P +   
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFSSLPERG-V 571

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNH 292
            +W A++     + + +   EL  R + E    NH
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A++   AKCG ++ A   F  +PER  ++W+AM+ G AQ G  + AL LF  M 
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 598

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              +  N ++M SVL AC H G +D+  R+ +   E   +  T    + ++D+  + G +
Sbjct: 599 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 658

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
           + AM+    M  + N   W +++G 
Sbjct: 659 DDAMELVNSMPFQANASIWGALLGA 683


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/443 (42%), Positives = 272/443 (61%), Gaps = 4/443 (0%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D   + A+++   KCGD+     +F  M +R D ++WN+M++GY       +A+ +   M
Sbjct: 626  DTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFM 685

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                 +L+  +  +VLSAC  +  L++G   H    R  L+  + +G+ALVDMY+KCG +
Sbjct: 686  MQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRI 745

Query: 141  NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            + A  FF  M  RN+Y+W S+I G A +G G KSL+LF+ MK  G  P+ VTFV VL  C
Sbjct: 746  DYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSAC 805

Query: 201  CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
               GLV EG  HFDSM   YG+ P +EH+ C+VDL GR G L++  D +N+MP+KP+   
Sbjct: 806  SHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLI 865

Query: 261  WGALLNAC--RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            W  +L AC     +NT +G  A+  L+E+E  N   Y+LLSN+YA    WD V   R  M
Sbjct: 866  WRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAM 925

Query: 319  KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
            +   VKK  GCS + +   VH F AGD++HP  + I   L E++ +++LAGY+  T   +
Sbjct: 926  RKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFAL 985

Query: 379  YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            YD+E E KE+ L  HSEK+A+AF +++    +PIRI+KNLRVC DCH   K IS++  R+
Sbjct: 986  YDLEGESKEELLSYHSEKIAVAF-VLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQ 1044

Query: 439  IIVRDRNRFHHFKEGKCSCKGYW 461
            I++RD NRFHHF+ GKCSC  +W
Sbjct: 1045 IVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 130/254 (51%), Gaps = 4/254 (1%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            G+    +     +I+  AKCG ++ A  +F  M  +D + WN+M+ G  Q  +  EA+ 
Sbjct: 417 SGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVK 476

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
            F  M+  ++  +  +M+S LS+C  LG +  G   H    +  L + V++  AL+ +Y 
Sbjct: 477 TFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYG 536

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE-KSLELFSLMKQAGVRPNEVTFV 194
           +CG + +    F  M + +  +W S+IG LA +     +++E F +M +AG  PN VTF+
Sbjct: 537 ECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFI 596

Query: 195 SVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++L     + L E G++ H   ++R    +  +E+   L+  YG+ G +    ++ ++M 
Sbjct: 597 TILAAVSSLSLHELGKQIHALVLKRNVAADTAIEN--ALLACYGKCGDMGYCENIFSRMS 654

Query: 254 MKPHAGAWGALLNA 267
            +    +W ++++ 
Sbjct: 655 DRQDEVSWNSMISG 668



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 129/253 (50%), Gaps = 12/253 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   +A++S  AK G +  A+ +F +M  R+ ++ N ++ G  +  +  EA+ LF  M+
Sbjct: 318 DLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELF--ME 375

Query: 82  IHD-VKLNEVSMVSVLSACTHLGALDQGRW----AHVYIERN-RLKMTVTLGTALVDMYS 135
           + D V+LN  S + +L+A      L+ G+      H ++ R+  L   + +G  L++MY+
Sbjct: 376 MKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYA 435

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG +N A   F  M  ++  TW S+I GL  N    ++++ F  M++  + P+  T +S
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            L  C  +G +  G + H + ++   G++  +     L+ LYG  G + E     + M  
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLK--LGLDLDVSVSNALLALYGECGYVKECQKAFSLMLD 553

Query: 255 KPHAGAWGALLNA 267
             H  +W +L+ A
Sbjct: 554 YDHV-SWNSLIGA 565



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 85/148 (57%), Gaps = 4/148 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+V  +A++   AKCG +D A + F+ MP R+  +WN+M++GYA+ G   ++L LF  
Sbjct: 726 ESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQ 785

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV--YIERNRLKMTVTLGTALVDMYSKC 137
           M++     + V+ V VLSAC+H G +++G ++H     E   L   +   + +VD+  + 
Sbjct: 786 MKLQGPLPDHVTFVGVLSACSHAGLVNEG-FSHFDSMSEIYGLAPRMEHFSCMVDLLGRV 844

Query: 138 GNMNKAMDFFWGMKER-NVYTWTSVIGG 164
           G +NK  DF   M  + NV  W +V+G 
Sbjct: 845 GELNKMEDFLNQMPVKPNVLIWRTVLGA 872



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 131/296 (44%), Gaps = 24/296 (8%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +C T +I+  A+ GD+   RK+FDEMP R+ ++W+ +++GY +     EA  LF  M   
Sbjct: 110 LCNT-LINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSD 168

Query: 84  DVKLNEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM- 140
               N  +  SV+ AC   G   L  G   H  + + +    VT    L+ MY     M 
Sbjct: 169 GFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMV 228

Query: 141 ---NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRPNEVTF 193
               +A D  W    RN+ +  S+I      G    + ++FS M++     G++PNE TF
Sbjct: 229 DYARRAFDSIW---PRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTF 285

Query: 194 VSVLRGCCVV---GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
            S++   C +   GLV    E   +   + G    L     LV  + +AG +  A ++  
Sbjct: 286 GSLISATCSLANSGLVL--LEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQ 343

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAE 304
           KM  +      G ++   R  +  E  EL    +  VEL   N  +Y+++   + E
Sbjct: 344 KMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVEL---NPNSYMIILTAFPE 396



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 61/269 (22%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H+ + +N     + L   L+++Y++ G++      F  M  RN+ +W+ +I G   N   
Sbjct: 96  HLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMP 155

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGC--C---------------------------- 201
            ++ ELF  M   G  PN   F SV+R C  C                            
Sbjct: 156 NEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASN 215

Query: 202 --------VVGLVEEGREHFDSMRREYGIEPW---LEHYGCLVDLYGRAGRLDEALDVIN 250
                    +G+V+  R  FDS+        W   L     ++ +Y + G    A D+ +
Sbjct: 216 VLISMYGNALGMVDYARRAFDSI--------WPRNLVSLNSMISVYCQRGDAVSAFDIFS 267

Query: 251 KMP-------MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN--HGAYV--LLS 299
            M        +KP+   +G+L++A     N+ +  L  + L  +E     H  YV   L 
Sbjct: 268 TMQKEVMGDGLKPNEYTFGSLISATCSLANSGL-VLLEQLLTRVEKSGFLHDLYVGSALV 326

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           + +A++ +     N+ Q M  + V  L G
Sbjct: 327 SGFAKAGSIGYAKNIFQKMSYRNVVSLNG 355


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/461 (38%), Positives = 284/461 (61%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G +   +++FD +   DVV    ++S   +   +D A ++F+EMP ++ ++W  M
Sbjct: 342 LYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVM 401

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY   G S +AL LF+ M+  DVK  + +    +SAC  LG+L  G+  H ++ +   
Sbjct: 402 VSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGF 461

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           + + + G AL+ MY++CG + +A   F  M   +  +W ++I  L  +G G ++LELF  
Sbjct: 462 EGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   G+ P+ ++F++VL  C   GLV+EG ++F+SM+R++GI P  +HY  L+DL GRAG
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           R+ EA D+I  MP +P    W A+L+ CR   + E+G  A+ +L ++  ++ G Y+LLSN
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            Y+ +  W     VR++M+ +GVKK PGCS IE   +VH F  GD  HP  +++   L  
Sbjct: 642 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEM 701

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  R++  GYV +T  V++D+E  +KE  L  HSE++A+ FGL+ L  G  + ++KNLR+
Sbjct: 702 VGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRI 761

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH V   +SK   REI+VRD  RFHHFK+G+CSC  YW
Sbjct: 762 CDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 141/312 (45%), Gaps = 38/312 (12%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +KV D + + D +  T M+    + GDV  AR +F+E+  +  + WNAM++GY   G  
Sbjct: 216 ARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMV 275

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM----TVTL 126
            EA  LF  M +  V L+E +  SVLSAC + G    G+  H  I R +        + +
Sbjct: 276 VEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPV 335

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV------------------------- 161
             ALV +YSKCGN+  A   F  MK ++V +W ++                         
Sbjct: 336 NNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNE 395

Query: 162 ------IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
                 + G    G  E +L+LF+ M+   V+P + T+   +  C  +G ++ G++    
Sbjct: 396 LSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGH 455

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN-T 274
           +  + G E        L+ +Y R G + EA  +   MP    + +W A+++A   + +  
Sbjct: 456 L-VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQHGHGR 513

Query: 275 EMGELASRKLVE 286
           E  EL  R + E
Sbjct: 514 EALELFDRMVAE 525



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 149/367 (40%), Gaps = 48/367 (13%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWN 58
           +Y   G L     +F    +P  V  T++++A A  G +  A   FD +P+  RD +  N
Sbjct: 68  LYTLSGDLPAAATLFRA--DPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHN 125

Query: 59  AMLAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY--I 115
           A+++ YA+   +  A+ +F  L+    ++ ++ S  ++LSA  HL  +     A +   +
Sbjct: 126 AVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSV 185

Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMD---FFWGMKERNVYTWTS------------ 160
            ++     +++  ALV +Y KC  +    D       M +++  TWT+            
Sbjct: 186 LKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVG 245

Query: 161 -------------------VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
                              +I G   +G   ++ ELF  M    V  +E TF SVL  C 
Sbjct: 246 AARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACA 305

Query: 202 VVGLVEEGRE---HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             G    G+        ++  +  E  L     LV LY + G +  A  + + M  K   
Sbjct: 306 NAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSK-DV 364

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            +W  +L+    Y  +   + A     E+  KN  +++++ + Y      +  + +   M
Sbjct: 365 VSWNTILSG---YVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRM 421

Query: 319 KAKGVKK 325
           +A+ VK 
Sbjct: 422 RAEDVKP 428


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/443 (41%), Positives = 279/443 (62%), Gaps = 4/443 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V  T +++    C  +  AR +FD +P+ +   WN ++ GYA  G    A+ L++ M 
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF 168

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            + +  +  +   VL AC  L A++ GR  H ++ +   +  V +G AL+DMY+KCG + 
Sbjct: 169 DYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVG 228

Query: 142 KAMDFFWGMKERN---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            A + F  +  R+   V +W ++I G AM+G   ++L+LF  M +   +P+ +TFV VL 
Sbjct: 229 SAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLS 287

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL+EEG   F++M R+Y I+P ++HY C+VDL G +GRLDEA ++I +M + P +
Sbjct: 288 ACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDS 347

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
           G WGALLN+C+++ N E+GE+A  +L+ELE  + G YV+LSNIYA++  W+ V  +R++M
Sbjct: 348 GVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLM 407

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
             + +KK   CS IEV  +VH F +GD +HP  +EI   L  +   +K AGY  +T  V 
Sbjct: 408 TDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVF 467

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+E++EK + +C HSE++AIAFGLIS   G  + I KNLR+C DCH   K ISK+  RE
Sbjct: 468 HDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITERE 527

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I VRD NR+HHFK+G CSC  YW
Sbjct: 528 ITVRDVNRYHHFKDGVCSCGDYW 550



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 3/180 (1%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           S+L +C    A+  G+  H  +          + T LV++Y  C +++ A   F  + + 
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           N++ W  +I G A NG  E +++L+  M   G+ P+  TF  VL+ C  +  +E GRE  
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH--AGAWGALLNACRMY 271
           + + +  G E  +     L+D+Y + G +  A +V +K+ ++      +W A++    M+
Sbjct: 200 EHVVQT-GWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMH 258


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/445 (42%), Positives = 278/445 (62%), Gaps = 3/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  DV   ++++   AKCGDV+LARK+FDEMP ++ ++W+ M+ GY+Q G   EAL+LF 
Sbjct: 139 HHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFK 198

Query: 79  --LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
             L Q +D+++N+ ++ SVL  C+     + G+  H    +     +  + ++L+ +YSK
Sbjct: 199 RALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSK 258

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +      F  +K RN+  W +++   A +    ++ ELF  M++ GV+PN +TF+ +
Sbjct: 259 CGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCL 318

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           L  C   GLVE+G EH   + +E+GIEP  +HY  LVDL GRAG+L+EA+ VI +MPM+P
Sbjct: 319 LYACSHAGLVEKG-EHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQP 377

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               WGALL  CR++ NTE+    + K+ E+   + G  VLLSN YA +  W+     R+
Sbjct: 378 TESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARK 437

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M+ +G+KK  G S +E    VH F AGD +H +  EI   L E+   +  AGYVA+T+ 
Sbjct: 438 MMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSF 497

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+ +++ +EK  T+  HSE++AIAFGLI+     PIR++KNLRVC DCH   K ISK   
Sbjct: 498 VLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTG 557

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R IIVRD NRFH F++GKC+C  YW
Sbjct: 558 RVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 6/234 (2%)

Query: 44  KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
           K+FD  P +    W+++++ +AQ      AL  F  M  H +  ++ ++ +   +   L 
Sbjct: 63  KLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALS 122

Query: 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
           +L      H    +      V +G++LVD Y+KCG++N A   F  M  +NV +W+ +I 
Sbjct: 123 SLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIY 182

Query: 164 GLAMNGAGEKSLELF--SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREY 220
           G +  G  E++L LF  +L +   +R N+ T  SVLR C    L E G++ H    +  +
Sbjct: 183 GYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSF 242

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274
               ++     L+ LY + G ++    V  ++ ++ + G W A+L AC  + +T
Sbjct: 243 DSSCFVA--SSLISLYSKCGVVEGGYKVFEEVKVR-NLGMWNAMLIACAQHAHT 293



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 11/195 (5%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           VL   TH  +L +G   H  + +   +    +   L++ YSK    + ++  F     ++
Sbjct: 13  VLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKS 72

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
             TW+SVI   A N     +L  F  M + G+ P++ T  +  +       V        
Sbjct: 73  ATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKS------VAALSSLPL 126

Query: 215 SMRREYGIEPWLEHY-----GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
           ++           H+       LVD Y + G ++ A  V ++MP K      G +    +
Sbjct: 127 ALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQ 186

Query: 270 MYKNTEMGELASRKL 284
           M  + E   L  R L
Sbjct: 187 MGLDEEALNLFKRAL 201


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/435 (42%), Positives = 272/435 (62%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +I +  KC  +  A ++F+E    D IA  +M+   +QC     A+ LF  M    ++
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +   + S+L+AC  L A +QG+  H ++ + +       G ALV  Y+KCG++  A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + ER V +W+++IGGLA +G G+++LELF  M   G+ PN +T  SVL  C   GLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +E + +F+SM+  +GI+   EHY C++DL GRAG+LD+A++++N MP + +A  WGALL 
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLG 682

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           A R++K+ E+G+LA+ KL  LE +  G +VLL+N YA +  W+ V  VR++MK   +KK 
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           P  S IEV  +VH F  GD++HP   EI   L E+   +  AG+V N +  ++D++  EK
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEK 802

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSE++A+AF L+S   G PIR+ KNLR+C DCH   K ISK+ +REII+RD NR
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 862

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF++G CSC  YW
Sbjct: 863 FHHFRDGTCSCGDYW 877



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 2/232 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           DV    A+++     G +D AR++F+E   ER+ ++WN +++ Y +  +  +A+ +F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
               ++  E     V++ACT    ++ GR  H  + R      V    ALVDMY K G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  M + +V +W ++I G  +NG   +++EL   MK +G+ PN  T  S+L+ C
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
              G  + GR+    M +           G LVD+Y +   LD+A  V + M
Sbjct: 314 SGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDARKVFDWM 364



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 6/241 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +IS  +KC     AR+ FDE+P+   ++W++++  Y+  G  R A+  FH M+   V  N
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF- 147
           E ++  VL  C     L  G   H           V +  ALV MY   G M+ A   F 
Sbjct: 103 EFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
               ERN  +W  ++     N     ++++F  M  +G++P E  F  V+  C     +E
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            GR+   +M    G +  +     LVD+Y + GR+D A  +  KMP      +W AL++ 
Sbjct: 220 AGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 268 C 268
           C
Sbjct: 278 C 278



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 98/193 (50%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV    A++    K G VD+A  +F++MP+ D ++WNA+++G    G    A+ L  
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   +  N  ++ S+L AC+  GA D GR  H ++ +        +G  LVDMY+K  
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A   F  M  R++    ++I G +  G  +++L LF  +++ G+  N  T  +VL+
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 199 GCCVVGLVEEGRE 211
               +      R+
Sbjct: 413 STASLEAASTTRQ 425



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 5/275 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D      ++   AK   +D ARK+FD M  RD I  NA+++G +  G+  EAL LF+ 
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++   + +N  ++ +VL +   L A    R  H    +        +   L+D Y KC  
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A   F      ++   TS+I  L+    GE +++LF  M + G+ P+     S+L  
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++R++  + +  +   LV  Y + G +++A    + +P +   
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFSSLPERG-V 571

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNH 292
            +W A++     + + +   EL  R + E    NH
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A++   AKCG ++ A   F  +PER  ++W+AM+ G AQ G  + AL LF  M 
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 598

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              +  N ++M SVL AC H G +D+  R+ +   E   +  T    + ++D+  + G +
Sbjct: 599 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 658

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
           + AM+    M  + N   W +++G 
Sbjct: 659 DDAMELVNSMPFQANASIWGALLGA 683



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
           AH++    +     +    L+  YSKC     A  FF  + +    +W+S++   + NG 
Sbjct: 24  AHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGL 83

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
              +++ F  M+  GV  NE     VL+  CV       + H  +M   +G + ++ +  
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLK--CVPDARLGAQVHAMAMATGFGSDVFVAN-- 139

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
            LV +YG  G +D+A  V N+   + +A +W  L++A    KN + G+
Sbjct: 140 ALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA--YVKNDQCGD 185


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/441 (40%), Positives = 281/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++ Q A+++   +   VD AR +F+ +  +D ++W +M+      G + EAL LF+ + 
Sbjct: 486 DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLI 545

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +++ + +++VSVL A   L +L +G+  H ++ R    +   +  +LVDMY++CG M 
Sbjct: 546 ETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTME 605

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A + F  +K+R++  WTS+I    M+G G+ +++LFS M    V P+ +TF+++L  C 
Sbjct: 606 NARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACS 665

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EG++HF+ M+ EY +EPW EHY CLVDL  R+  L+EA   +  MP++P A  W
Sbjct: 666 HSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVW 725

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL ACR++ N ++GE+A++KL++L T+N G YVL+SN +A    W+ V  VR IMK  
Sbjct: 726 CALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGN 785

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK-LAGYVANTNPVMYD 380
            +KK PGCS IEV+ ++H F A D++HP+ N I + L + ++ LK   GY A T  V +D
Sbjct: 786 KLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHD 845

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           + EEEK   L  HSE++A+ +GL+   +G  +RI KNLR+C DCH   K+ S++  R ++
Sbjct: 846 VCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLV 905

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD +RFHHF+ G CSC  +W
Sbjct: 906 VRDASRFHHFERGLCSCGDFW 926



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDE--MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           VC  A+I+  AKCGD+  AR +FD   M + DP++WN++++ +   G+S EAL LF  MQ
Sbjct: 185 VCN-ALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQ 243

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N  + VS L AC     +  GR  H  I ++     V +  AL+ MY+ CG M 
Sbjct: 244 EVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQME 303

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M  ++  +W +++ G+  N     ++  F  M+ +G +P++V+ ++++    
Sbjct: 304 DAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASG 363

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
               +  G E   +   ++GI+  +     L+D+YG+
Sbjct: 364 RSANLLAGME-VHAYAIKHGIDSNMHIGNSLIDMYGK 399



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 6/248 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   T  +    KCG    A K+FD+M ER    WNAM+      G+  EA+ L+  M++
Sbjct: 82  VFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRV 141

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             V L+  +   VL AC        G   H    +      V +  AL+ MY+KCG++  
Sbjct: 142 LGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGG 201

Query: 143 AMDFFWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           A   F    M++ +  +W S+I      G   ++L LF  M++ GV  N  TFVS L+ C
Sbjct: 202 ARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC 261

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                ++ GR  H   ++  +  + ++ +   L+ +Y   G++++A  V   M  K    
Sbjct: 262 EGPTFIKIGRGIHAVILKSNHFTDVYVSN--ALIAMYANCGQMEDAERVFKSMLFK-DCV 318

Query: 260 AWGALLNA 267
           +W  LL+ 
Sbjct: 319 SWNTLLSG 326



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 119/251 (47%), Gaps = 5/251 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  DV    A+I+  A CG ++ A ++F  M  +D ++WN +L+G  Q     +A++ F 
Sbjct: 282 HFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQ 341

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ    K ++VS++++++A      L  G   H Y  ++ +   + +G +L+DMY KC 
Sbjct: 342 DMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCC 401

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +      F  M E+++ +WT++I G A N     +L L   ++   +  + +   S+L 
Sbjct: 402 CVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILL 461

Query: 199 GCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C   GL  E   +       + G+   L     +V++YG    +D A  V   +  K  
Sbjct: 462 ACS--GLKSEKLIKEIHGYVLKGGLADILIQ-NAIVNVYGELALVDYARHVFESINSKDI 518

Query: 258 AGAWGALLNAC 268
             +W +++  C
Sbjct: 519 V-SWTSMITCC 528



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           L  C    AL QG+  H +  + +  + +V L T  V MY KCG+   A+  F  M ER 
Sbjct: 53  LELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERT 112

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE--- 211
           ++TW ++IG     G   +++EL+  M+  GV  +  TF  VL+ C   G  +E R    
Sbjct: 113 IFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC---GAFKERRLGCE 169

Query: 212 -HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM-KPHAGAWGALLNA 267
            H  +++  YG   ++     L+ +Y + G L  A  + +   M K    +W ++++A
Sbjct: 170 IHGVAVKCGYG--GFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISA 225


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/455 (42%), Positives = 282/455 (61%), Gaps = 13/455 (2%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G C K   G  + +V    + I+   KCG V+  R++FDEMP +  I WNA+++GY+Q G
Sbjct: 180 GQCVK---GGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNG 236

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            + + L L+  M+   V  +  ++VSVLS+C HLGA   G      +E N     V +  
Sbjct: 237 LAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSN 296

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           A + MY++CGN+ KA   F  M  +++ +WT++IG   M+G GE  L LF  M + G+RP
Sbjct: 297 ASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRP 356

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           +   FV VL  C   GL ++G E F +M+REY +EP  EHY CLVDL GRAGRLDEA++ 
Sbjct: 357 DGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEF 416

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I  MP++P    WGALL AC+++KN +M ELA  K++E E  N G YVL+SNIY++SKN 
Sbjct: 417 IESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQ 476

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI-SRRLKL 367
           + +  +R +M+ +  +K PG S +E    VH F AGD +H +  E+  ML E+ +  ++L
Sbjct: 477 EGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMEL 536

Query: 368 AGYVANTNPVMYDIEE-EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
           AG +        D +  EE   T  +HSE++AIAFG+++   G  I ++KNLRVC DCH 
Sbjct: 537 AGNM--------DCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHV 588

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
             K +SK+ +R+ +VRD +RFH+FK+G CSCK YW
Sbjct: 589 FLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA--WNAMLAGYAQCGKSREALHLF 77
           EP V+  TA+IS   KCG V  ARK+F+E P+   ++  +NA+++GY    K  +A ++F
Sbjct: 87  EPFVL--TALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMF 144

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M+   V ++ V+M+ ++  CT    L  GR  H    +  L   V +  + + MY KC
Sbjct: 145 RRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKC 204

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G++      F  M  + + TW +VI G + NG     LEL+  MK +GV P+  T VSVL
Sbjct: 205 GSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVL 264

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  +G  + G E    +    G  P +      + +Y R G L +A  V + MP+K  
Sbjct: 265 SSCAHLGAKKIGHE-VGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSL 323

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA-YVLLSNIYAESKNWDRVINVRQ 316
             +W A++    M+   E+G +    +++   +  GA +V++ +  + S   D+ + + +
Sbjct: 324 V-SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFR 382

Query: 317 IMK 319
            MK
Sbjct: 383 AMK 385



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 6/214 (2%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           WN  L   A      E++ L+  M       +  S   +L +C  L     G+  H ++ 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT--WTSVIGGLAMNGAGEKS 174
           +   +    + TAL+ MY KCG +  A   F    + +  +  + ++I G   N     +
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLV 233
             +F  MK+ GV  + VT + ++  C V   +  GR  H   ++   G++  +      +
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSFI 198

Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            +Y + G ++    + ++MP+K     W A+++ 
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLI-TWNAVISG 231


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/461 (40%), Positives = 278/461 (60%), Gaps = 1/461 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +   + Y ++VF  +   D+V   + ++A  +   +D AR  FD M  RD ++W  +
Sbjct: 463 MYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTI 522

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ YA   +S EA+  F  M       N   +  +L  C  LGA   G+  H    +  +
Sbjct: 523 ISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGM 582

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+ MY KCG  + +   F  M+ER+++TW ++I G A +G G ++++++  
Sbjct: 583 DSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQH 641

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ AGV PNEVTFV +L  C   GLV+EG + F SM ++YG+ P  EHY C+VDL GR G
Sbjct: 642 MESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTG 701

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            +  A   I  MP++P    W ALL AC+++KN E+G+ A+ KL  +E  N G YV+LSN
Sbjct: 702 DVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSN 761

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IY+    W  V  VR+IMK +GV K PGCS  ++  ++H F  GD+ H +  EI   L E
Sbjct: 762 IYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEE 821

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   LK  GYV +T  V++DI+EE+KE +L  HSEK+A+A+ L++  +G+PI+I+KNLR+
Sbjct: 822 LYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRI 881

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K +S V  R+I +RD NRFHHF+ G CSC+ +W
Sbjct: 882 CGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 46/298 (15%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y  LG +   ++VFDG+ E + V   AMIS   + GD+ +AR++FD MP RD  +WN+ML
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSML 165

Query: 62  AGYAQCGKSREALHLFHLM-----------------------------QIHDVKL--NEV 90
            GY    +  +A +LF  M                             ++H   L  ++ 
Sbjct: 166 TGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQS 225

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK-CGNMNKAMDFFWG 149
           +  S LSA   LG LD      V   +   +  V +GTA++++YS+    ++ A+ FF  
Sbjct: 226 NFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFES 285

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELF--SLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
           M ERN YTW+++I  L+  G  + ++ ++    +K    R       +++ G    G ++
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR------TALITGLAQCGRID 339

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           + R  F+ +      EP +  +  L+  Y + G ++EA ++ +KMP + +  +W  ++
Sbjct: 340 DARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 94/179 (52%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           A+ G +   + +F+ I EP VV   A+I+   + G V+ A+++FD+MP R+ I+W  M+A
Sbjct: 333 AQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           GYAQ G+S EAL L   +    +  +  S+ S+  AC+++ AL+ G   H    +   + 
Sbjct: 393 GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQF 452

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
                 AL+ MY KC NM  A   F  M  +++ +W S +  L  N   +++   F  M
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM 511



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 166/363 (45%), Gaps = 25/363 (6%)

Query: 20  EPDVVCQTAMISACAKCGDV-DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           E DVV  TA+++  ++   V D A K F+ M ER+   W+ M+A  +  G+   A+ ++ 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
              +  +     ++++ L+ C   G +D  R   +  E+    + V+   AL+  Y + G
Sbjct: 316 RDPVKSIAC-RTALITGLAQC---GRIDDAR---ILFEQIPEPIVVSW-NALITGYMQNG 367

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +N+A + F  M  RN  +W  +I G A NG  E++L L   + ++G+ P+  +  S+  
Sbjct: 368 MVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFF 427

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKP 256
            C  +  +E G +   S+  + G +     + C  L+ +YG+   ++ A  V ++M  K 
Sbjct: 428 ACSNIVALETGTQ-VHSLAVKVGCQ--FNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
              +W + L A  + +N  + E A      + +++  ++  + + YA ++  +  +   +
Sbjct: 485 IV-SWNSFLAA--LVQNDLLDE-ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFK 540

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
            M  +   +LP   ++ +   V       +   + + + + LG  S  +     VAN   
Sbjct: 541 TMFCE--HELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI-----VANALI 593

Query: 377 VMY 379
            MY
Sbjct: 594 SMY 596



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 8/193 (4%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG +G  ++VFD +   D++   +MISA    G  D AR ++D +   +      +L+GY
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            + G+  EA  +F  M    ++ N V+  +++S     G +   R     +        V
Sbjct: 107 GRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSR----DV 158

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
           +   +++  Y     M  A + F  M ERN+ +WT +I G        K+ ++F  M + 
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 185 GVRPNEVTFVSVL 197
           G+ P++  F S L
Sbjct: 219 GLLPDQSNFASAL 231



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 114/268 (42%), Gaps = 30/268 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G     + ++D I   ++     ++S   + G V  AR++FD M ER+ +AWNAM+
Sbjct: 75  YCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMI 134

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNRL 120
           + Y Q G    A  LF  M   DV     S  S+L+  C  L  +D         ERN +
Sbjct: 135 SCYVQNGDITMARRLFDAMPSRDVS----SWNSMLTGYCHSLQMVDARNLFEKMPERNLV 190

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGM-------KERNVYTWTSVIGGLAMNGAGEK 173
             TV     ++  Y +  N  KA D F  M        + N  +  S + GL  N    +
Sbjct: 191 SWTV-----MISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLG-NLDVLE 244

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCV-VGLVEEGREHFDSM--RREYGIEPWLEHYG 230
           SL + +L  + G   + V   ++L        +++   + F+SM  R EY        + 
Sbjct: 245 SLRVLAL--KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEY-------TWS 295

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHA 258
            ++      GR+D A+ V  + P+K  A
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIA 323


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/461 (40%), Positives = 278/461 (60%), Gaps = 1/461 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +   + Y ++VF  +   D+V   + ++A  +   +D AR  FD M  RD ++W  +
Sbjct: 463 MYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTI 522

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ YA   +S EA+  F  M       N   +  +L  C  LGA   G+  H    +  +
Sbjct: 523 ISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGM 582

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+ MY KCG  + +   F  M+ER+++TW ++I G A +G G ++++++  
Sbjct: 583 DSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQH 641

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ AGV PNEVTFV +L  C   GLV+EG + F SM ++YG+ P  EHY C+VDL GR G
Sbjct: 642 MESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTG 701

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            +  A   I  MP++P    W ALL AC+++KN E+G+ A+ KL  +E  N G YV+LSN
Sbjct: 702 DVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSN 761

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IY+    W  V  VR+IMK +GV K PGCS  ++  ++H F  GD+ H +  EI   L E
Sbjct: 762 IYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEE 821

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +   LK  GYV +T  V++DI+EE+KE +L  HSEK+A+A+ L++  +G+PI+I+KNLR+
Sbjct: 822 LYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRI 881

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH   K +S V  R+I +RD NRFHHF+ G CSC+ +W
Sbjct: 882 CGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 46/298 (15%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y  LG +   ++VFDG+ E + V   AMIS   + GD+ +AR++FD MP RD  +WN+ML
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSML 165

Query: 62  AGYAQCGKSREALHLFHLM-----------------------------QIHDVKL--NEV 90
            GY    +  +A +LF  M                             ++H   L  ++ 
Sbjct: 166 TGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQS 225

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK-CGNMNKAMDFFWG 149
           +  S LSA   LG LD      V   +   +  V +GTA++++YS+    ++ A+ FF  
Sbjct: 226 NFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFES 285

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELF--SLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
           M ERN YTW+++I  L+  G  + ++ ++    +K    R       +++ G    G ++
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR------TALITGLAQCGRID 339

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           + R  F+ +      EP +  +  L+  Y + G ++EA ++ +KMP + +  +W  ++
Sbjct: 340 DARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 94/179 (52%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           A+ G +   + +F+ I EP VV   A+I+   + G V+ A+++FD+MP R+ I+W  M+A
Sbjct: 333 AQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
           GYAQ G+S EAL L   +    +  +  S+ S+  AC+++ AL+ G   H    +   + 
Sbjct: 393 GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQF 452

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
                 AL+ MY KC NM  A   F  M  +++ +W S +  L  N   +++   F  M
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM 511



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 166/363 (45%), Gaps = 25/363 (6%)

Query: 20  EPDVVCQTAMISACAKCGDV-DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           E DVV  TA+++  ++   V D A K F+ M ER+   W+ M+A  +  G+   A+ ++ 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
              +  +     ++++ L+ C   G +D  R   +  E+    + V+   AL+  Y + G
Sbjct: 316 RDPVKSIAC-RTALITGLAQC---GRIDDAR---ILFEQIPEPIVVSW-NALITGYMQNG 367

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +N+A + F  M  RN  +W  +I G A NG  E++L L   + ++G+ P+  +  S+  
Sbjct: 368 MVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFF 427

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKP 256
            C  +  +E G +   S+  + G +     + C  L+ +YG+   ++ A  V ++M  K 
Sbjct: 428 ACSNIVALETGTQ-VHSLAVKVGCQ--FNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
              +W + L A  + +N  + E A      + +++  ++  + + YA ++  +  +   +
Sbjct: 485 IV-SWNSFLAA--LVQNDLLDE-ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFK 540

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
            M  +   +LP   ++ +   V       +   + + + + LG  S  +     VAN   
Sbjct: 541 TMFCE--HELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI-----VANALI 593

Query: 377 VMY 379
            MY
Sbjct: 594 SMY 596



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 8/193 (4%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG +G  ++VFD +   D++   +MISA    G  D AR ++D +   +      +L+GY
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            + G+  EA  +F  M    ++ N V+  +++S     G +   R     +        V
Sbjct: 107 GRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSR----DV 158

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
           +   +++  Y     M  A + F  M ERN+ +WT +I G        K+ ++F  M + 
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 185 GVRPNEVTFVSVL 197
           G+ P++  F S L
Sbjct: 219 GLLPDQSNFASAL 231



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 114/268 (42%), Gaps = 30/268 (11%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y   G     + ++D I   ++     ++S   + G V  AR++FD M ER+ +AWNAM+
Sbjct: 75  YCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMI 134

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNRL 120
           + Y Q G    A  LF  M   DV     S  S+L+  C  L  +D         ERN +
Sbjct: 135 SCYVQNGDITMARRLFDAMPSRDVS----SWNSMLTGYCHSLQMVDARNLFEKMPERNLV 190

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGM-------KERNVYTWTSVIGGLAMNGAGEK 173
             TV     ++  Y +  N  KA D F  M        + N  +  S + GL  N    +
Sbjct: 191 SWTV-----MISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLG-NLDVLE 244

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCV-VGLVEEGREHFDSM--RREYGIEPWLEHYG 230
           SL + +L  + G   + V   ++L        +++   + F+SM  R EY        + 
Sbjct: 245 SLRVLAL--KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEY-------TWS 295

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHA 258
            ++      GR+D A+ V  + P+K  A
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIA 323


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/450 (40%), Positives = 275/450 (61%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +K+F  +   +++   A++S     G ++ A+  F+EMP ++ +    M++G AQ G   
Sbjct: 348 RKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           E L LF  M++   +  + +    L+AC+ LGAL+ GR  H  +     + ++++G A++
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMI 467

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
            MY+KCG +  A   F  M   ++ +W S+I  L  +G G K++ELF  M + GV P+ +
Sbjct: 468 SMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRI 527

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TF++VL  C   GLVE+GR +F+SM   YGI P  +HY  +VDL+ RAG    A  VI+ 
Sbjct: 528 TFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDS 587

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP KP A  W ALL  CR++ N ++G  A+ +L +L  +N G YVLLSNIYA+   W+ V
Sbjct: 588 MPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEV 647

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR++M+ + V+K P CS IEV+ +VH F   D+ HP    +   L ++   +K  GY+
Sbjct: 648 AKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYI 707

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +T  V++D+E E+KE  L  HSEK+A+ FG++ L  G  +R+ KN+R+C DCH+  K +
Sbjct: 708 PDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFM 767

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SKV  REIIVRDR RFHHFK G CSC+ YW
Sbjct: 768 SKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 135/277 (48%), Gaps = 36/277 (12%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +K+FD + + D +  T MI+   +  D++ AR++F+ M E    AWNAM++GY  CG  +
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL----KMTVTLG 127
           EAL L   M+   ++ ++++  +++SAC ++G+   G+  H YI +N L       +++ 
Sbjct: 272 EALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVS 331

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV-------------------------- 161
            AL+ +Y K   +++A   F+ M  RN+ TW ++                          
Sbjct: 332 NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391

Query: 162 -----IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
                I GLA NG G++ L+LF  M+  G  P +  F   L  C V+G +E GR+   + 
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQ-LHAQ 450

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
               G E  L     ++ +Y + G ++ A  V   MP
Sbjct: 451 LVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 181/400 (45%), Gaps = 69/400 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWN 58
           MY +   L Y +++F+ I  PD + +T +I+A    G+++L R++F+  P   RD + +N
Sbjct: 57  MYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYN 116

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT-HLGALDQGRWAHVYIER 117
           AM+ GYA  G    AL LF  M+  D + ++ +  SVLSA    +G   Q    H  + +
Sbjct: 117 AMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVK 176

Query: 118 NRLK-MTVTLGTALVDMYSK--------CGNMNKAMDFFWGMKERNVYTWTSVIGGLA-- 166
             +  ++ ++  AL+ +Y K        C  M  A   F  M +R+  TWT++I G    
Sbjct: 177 TGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRN 236

Query: 167 --MNGAGE---------------------------KSLELFSLMKQAGVRPNEVTFVSVL 197
             +NGA E                           ++L L   M+  G++ +++T+ +++
Sbjct: 237 DDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTII 296

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC------LVDLYGRAGRLDEALDVIN 250
             C  VG  + G++ H   ++ E  + P   H  C      L+ LY +  ++DEA  +  
Sbjct: 297 SACANVGSFQMGKQVHAYILKNE--LNP--NHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            MP++ +   W A+L+    Y N    E A     E+  KN     ++ +  A++   D 
Sbjct: 353 AMPVR-NIITWNAILSG---YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDE 408

Query: 311 VINVRQIMKAKGVKK--------LPGCSV---IEVDREVH 339
            + + + M+  G +         L  CSV   +E  R++H
Sbjct: 409 GLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLH 448


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/462 (42%), Positives = 279/462 (60%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     +KVFD I   + V  TA+IS     G  D A ++F  MP R   AW A+
Sbjct: 149 MYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTAL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS-VLSACTHLGALDQGRWAHVYIERNR 119
           ++G+ + G+S  A+ LF  M+   V +++  ++S  +     L A   GR  H    R  
Sbjct: 209 ISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLG 268

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
              ++ +G A+VDMYSKC +++ A + F  +  R++ +WT+++ G A +G  E++  L+ 
Sbjct: 269 FSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYD 328

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AGV+PNEVTFV ++  C   GLV++GR+ FDSM+ EYGI P L+HY C +DL  R+
Sbjct: 329 RMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRS 388

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA ++I  MP  P    W +LL+AC+ Y N EM    +  L+EL  K    YVLLS
Sbjct: 389 GHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYVLLS 448

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA +  WD V  VR++M    ++K PG S IEV RE   F AG+       EI   L 
Sbjct: 449 NVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLE 508

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   ++  GYV +T+ VM+D+EE EKE  LC HSE++A+AFG++    G  IR+VKNLR
Sbjct: 509 ELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVKNLR 568

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K IS++F R+IIVRD +RFHHF+ GKCSC  +W
Sbjct: 569 VCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 9/194 (4%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKL 87
           ++SA AK   +   R +FDE P RD   ++++LA  +        L L   M   D ++ 
Sbjct: 44  LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRP 103

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +   + S+ SA   L +L  G+  H +   +       + ++L+DMY KCG  + A   F
Sbjct: 104 DHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVF 163

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF--VSVLRGCCVVGL 205
             +  +N   WT++I G  +NG  +++LELF  M      P    F   +++ G    G 
Sbjct: 164 DSIVAKNSVMWTALISGYVLNGRSDEALELFRSM------PGRTLFAWTALISGFVRSGE 217

Query: 206 VEEGREHFDSMRRE 219
                + F  MRR+
Sbjct: 218 SVSAVKLFVDMRRD 231


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/462 (40%), Positives = 285/462 (61%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G   Y + VFD I   + +  T MIS  A+ G    A ++F + P R+  AW A+
Sbjct: 150 MYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTAL 209

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNE-VSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G  Q G   +A HLF  M+   + + + + + SV+ AC +L   + G+  H  +    
Sbjct: 210 ISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLG 269

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  + +  AL+DMY+KC ++  A   F  M  ++V +WTS+I G A +G  E++L L+ 
Sbjct: 270 YESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYD 329

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AGV+PNEVTFV ++  C   GLV +GR  F +M  ++GI P L+HY CL+DL+ R+
Sbjct: 330 EMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRS 389

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G LDEA ++I  MP+ P    W ALL++C+ + NT+M    +  L+ L+ ++  +Y+LLS
Sbjct: 390 GHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLS 449

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           NIYA +  W+ V  VR++M     KK PG S I++ +  H F+AG+ +HP  +EI  ++ 
Sbjct: 450 NIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMR 509

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   ++  GY  +T+ V++D++++EKE  L  HSE++A+A+GL+    G  IRIVKNLR
Sbjct: 510 ELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLR 569

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K+IS + NREI VRD  R+HHFK+G CSC  +W
Sbjct: 570 VCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 148/374 (39%), Gaps = 82/374 (21%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           HEP       +++A  KCG +  A ++FD +P RDP+AW ++L       +   AL +  
Sbjct: 37  HEP---IPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISR 93

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGAL--DQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            +       +     S++ AC +LG L   QG+  H     +       + ++L+DMY+K
Sbjct: 94  SLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAK 153

Query: 137 CG-------------NMN------------------KAMDFFWGMKERNVYTWTSVIGGL 165
            G             ++N                  +A   F     RN++ WT++I GL
Sbjct: 154 FGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGL 213

Query: 166 AMNGAGEKSLELFSLMKQAGVR-PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
             +G G  +  LF  M+  G+   + +   SV+  C  + L E G++    +    G E 
Sbjct: 214 VQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQ-MHGVVITLGYES 272

Query: 225 WLEHYGCLVDLYGRA-------------------------------GRLDEALDVINKMP 253
            L     L+D+Y +                                G+ +EAL + ++M 
Sbjct: 273 CLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMV 332

Query: 254 M---KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA------YVLLSNIYAE 304
           +   KP+   +  L++AC        G    R +VE    +HG       Y  L ++++ 
Sbjct: 333 LAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVE----DHGISPSLQHYTCLLDLFSR 388

Query: 305 SKNWDRVINVRQIM 318
           S + D   N+ + M
Sbjct: 389 SGHLDEAENLIRTM 402



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 76/182 (41%), Gaps = 18/182 (9%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  I +  L     +   L++ Y KCG +  A+  F  +  R+   W S++    ++   
Sbjct: 26  HAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRP 85

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL--VEEGREHFDSMRREYGIEPWLEH- 228
            ++L +   +   G  P+   F S+++ C  +G+  V++G++    +   + + P+ +  
Sbjct: 86  HRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQ----VHARFFLSPFSDDD 141

Query: 229 --YGCLVDLYGRAGRLD---------EALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
                L+D+Y + G  D          +L+ I+   M       G    A R+++ T   
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYR 201

Query: 278 EL 279
            L
Sbjct: 202 NL 203


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 285/463 (61%), Gaps = 17/463 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   + VFD I   + +  TAM+S  AK G  + A ++F  +P ++  +W A+
Sbjct: 86  MYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTAL 145

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G+ Q GK  EA  +F  M+   V  L+ + + S++ AC +L A   GR  H       
Sbjct: 146 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH------- 198

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                  G AL+DMY+KC ++  A D F  M+ R+V +WTS+I G+A +G  EK+L L+ 
Sbjct: 199 -------GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 251

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   GV+PNEVTFV ++  C  VG VE+GRE F SM ++YGI P L+HY CL+DL GR+
Sbjct: 252 DMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 311

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
           G LDEA ++I+ MP  P    W ALL+AC+     +MG  +A   +   + K+   Y+LL
Sbjct: 312 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILL 371

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA +  W +V   R+ +    V+K PG S +EV +E   F+AG+ +HP   +I  +L
Sbjct: 372 SNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 431

Query: 359 GEISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            ++   +++  GYV +T+ +++D++E+EKE  L  HSE+ A+A+GL+    G PIRIVKN
Sbjct: 432 KKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKN 491

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           LRVC DCH V K IS++  REIIVRD  R+HHFK GKCSC  +
Sbjct: 492 LRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 534



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 26/226 (11%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQ 107
           MP RD IAW ++L    Q   S + L +F  +     ++ ++    +++ AC +LG++D 
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           GR  H +   +       + ++LVDMY+KCG +N A   F  ++ +N  +WT+++ G A 
Sbjct: 61  GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG--IEPW 225
           +G  E++LELF ++       N  ++ +++ G    G   E    F  MRRE    ++P 
Sbjct: 121 SGRKEEALELFRILPVK----NLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPL 176

Query: 226 L-------------------EHYGCLVDLYGRAGRLDEALDVINKM 252
           +                    H   L+D+Y +   +  A D+ ++M
Sbjct: 177 VLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRM 222


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/447 (42%), Positives = 279/447 (62%), Gaps = 8/447 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D+   + ++    KCGD+  A+  FD +P  D +AW  M++G  + G+   A H+F 
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFS 607

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT----LGTALVDMY 134
            M++  V  +E ++ ++  A + L AL+QGR  H     N LK+  T    +GT+LVDMY
Sbjct: 608 QMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA----NALKLNCTNDPFVGTSLVDMY 663

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           +KCG+++ A   F  ++  N+  W +++ GLA +G G+++L+LF  MK  G++P++VTF+
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            VL  C   GLV E  +H  SM  +YGI+P +EHY CL D  GRAG + +A ++I  M M
Sbjct: 724 GVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSM 783

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +  A  +  LL ACR+  +TE G+  + KL+ELE  +  AYVLLSN+YA +  WD +   
Sbjct: 784 EASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLA 843

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R +MK   VKK PG S IEV  ++H F   D ++ +   I   + ++ R +K  GYV  T
Sbjct: 844 RTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPET 903

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
           +  + D+EEEEKE  L  HSEK+A+AFGL+S     PIR++KNLRVC DCH+  K I+KV
Sbjct: 904 DFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKV 963

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +NREI++RD NRFH FK+G CSC  YW
Sbjct: 964 YNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 130/250 (52%), Gaps = 15/250 (6%)

Query: 22  DVVCQTAMISA-----CAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           D    TA+I A     C K  ++   R  FD       +AWNAM+AGY Q     + L L
Sbjct: 451 DSFVSTALIDAYSRNRCMKEAEILFERHNFD------LVAWNAMMAGYTQSHDGHKTLKL 504

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F LM     + ++ ++ +V   C  L A++QG+  H Y  ++   + + + + ++DMY K
Sbjct: 505 FALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVK 564

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG+M+ A   F  +   +   WT++I G   NG  E++  +FS M+  GV P+E T  ++
Sbjct: 565 CGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATL 624

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +    +  +E+GR+ H ++++     +P++     LVD+Y + G +D+A  +  ++ M 
Sbjct: 625 AKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM 682

Query: 256 PHAGAWGALL 265
            +  AW A+L
Sbjct: 683 -NITAWNAML 691



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 132/249 (53%), Gaps = 8/249 (3%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +    ++I+   K      AR +FD M ERD I+WN+++AG AQ G   EA+ LF  +  
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409

Query: 83  HDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNM 140
             +K ++ +M SVL A + L   L   +  HV+ I+ N +  +  + TAL+D YS+   M
Sbjct: 410 CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF-VSTALIDAYSRNRCM 468

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A +  +     ++  W +++ G   +  G K+L+LF+LM + G R ++ T  +V + C
Sbjct: 469 KEA-EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC 527

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
             +  + +G++ H  +++  Y ++ W+     ++D+Y + G +  A    + +P+ P   
Sbjct: 528 GFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDV 584

Query: 260 AWGALLNAC 268
           AW  +++ C
Sbjct: 585 AWTTMISGC 593



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 8   LGYCQ--KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           LG C   ++      P+      +IS  +KCG +  AR++FD+MP+RD ++WN++LA YA
Sbjct: 57  LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116

Query: 66  QCGKS-----REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           Q  +      ++A  LF +++   V  + +++  +L  C H G +      H Y  +  L
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                +  ALV++Y K G + +    F  M  R+V  W  ++      G  E++++L S 
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 236

Query: 181 MKQAGVRPNEVTF 193
              +G+ PNE+T 
Sbjct: 237 FHSSGLNPNEITL 249



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N  L+ Y   G+    L  F  M   DV+ ++V+ + +L+    + +L  G+  H    +
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             L + +T+  +L++MY K      A   F  M ER++ +W SVI G+A NG   +++ L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVV--GLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
           F  + + G++P++ T  SVL+    +  GL    + H  +++     + ++     L+D 
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVS--TALIDA 461

Query: 236 YGRAGRLDEA 245
           Y R   + EA
Sbjct: 462 YSRNRCMKEA 471


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 271/435 (62%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +I +  KC  +  A ++F+E    D IA  +M+   +QC     A+ LF  M    ++
Sbjct: 443 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +   + S+L+AC  L A +QG+  H ++ + +       G ALV  Y+KCG++  A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + ER V +W+++IGGLA +G G+++LELF  M   G+ PN +T  SVL  C   GLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +E + +F+SM+  +GI+   EHY C++DL GRAG+LD+A++++N MP + +A  WGALL 
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLG 682

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           A R++K+ E+G+LA+ KL  LE +  G +VLL+N YA S  W+ V  VR++MK   +KK 
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 742

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           P  S +EV  +VH F  GD++HP   EI   L E+   +  AGY+ N +  ++D++  EK
Sbjct: 743 PAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEK 802

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSE++A+AF L+S   G PIR+ KNLR+C DCH   K IS + +REII+RD NR
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINR 862

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF++G CSC  YW
Sbjct: 863 FHHFRDGTCSCGDYW 877



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 4/267 (1%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAML 61
           A+LG   +   +  G    DV    A+++     G +D AR++FDE   ER+ ++WN ++
Sbjct: 116 AQLGAQVHAMAMATGFGS-DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLM 174

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + Y +  +  +A+ +F  M    ++  E     V++ACT    +D GR  H  + R   +
Sbjct: 175 SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE 234

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V    ALVDMY K G ++ A   F  M + +V +W ++I G  +NG   +++EL   M
Sbjct: 235 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           K +G+ PN     S+L+ C   G  + GR+    M +           G LVD+Y +   
Sbjct: 295 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHF 353

Query: 242 LDEALDVINKMPMKPHAGAWGALLNAC 268
           LD+A+ V + M  +     W AL++ C
Sbjct: 354 LDDAMKVFDWMSHRDLI-LWNALISGC 379



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E DV    A++    K G VD+A  +F++MP+ D ++WNA+++G    G    A+ L  
Sbjct: 233 YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   +  N   + S+L AC   GA D GR  H ++ +        +G  LVDMY+K  
Sbjct: 293 QMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ AM  F  M  R++  W ++I G +  G  +++  +F  +++ G+  N  T  +VL+
Sbjct: 353 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 412

Query: 199 GCCVVGLVEEGRE 211
               +      R+
Sbjct: 413 STASLEAASATRQ 425



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 136/314 (43%), Gaps = 29/314 (9%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +IS  +KC     AR++FDE+P+   ++W++++  Y+  G  R A+  FH M+   V  N
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF- 147
           E ++  VL  C     L  G   H           V +  ALV MY   G M+ A   F 
Sbjct: 103 EFALPVVLK-CVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFD 159

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
               ERN  +W  ++     N     ++++F  M  +G++P E  F  V+  C     ++
Sbjct: 160 EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNID 219

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            GR+   +M    G E  +     LVD+Y + GR+D A  +  KMP      +W AL++ 
Sbjct: 220 AGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           C                  L   +H A  LL  +    K+   V NV   M +  +K   
Sbjct: 278 C-----------------VLNGHDHRAIELLLQM----KSSGLVPNV--FMLSSILKACA 314

Query: 328 GCSVIEVDREVHEF 341
           G    ++ R++H F
Sbjct: 315 GAGAFDLGRQIHGF 328



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 129/275 (46%), Gaps = 5/275 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D      ++   AK   +D A K+FD M  RD I WNA+++G +  G+  EA  +F+ 
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYG 394

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++   + +N  ++ +VL +   L A    R  H   E+        +   L+D Y KC  
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F      ++   TS+I  L+    GE +++LF  M + G+ P+     S+L  
Sbjct: 455 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++R++  + +  +   LV  Y + G +++A    + +P +   
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFSSLPERG-V 571

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNH 292
            +W A++     + + +   EL  R + E    NH
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A++   AKCG ++ A   F  +PER  ++W+AM+ G AQ G  + AL LF  M 
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 598

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              +  N ++M SVL AC H G +D+  R+ +   E   +  T    + ++D+  + G +
Sbjct: 599 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 658

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
           + AM+    M  + N   W +++G 
Sbjct: 659 DDAMELVNSMPFQANASVWGALLGA 683


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/440 (42%), Positives = 274/440 (62%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T+++   AK G +D+A ++F  M  R+ ++W+AM++G+AQ G+S EAL LF  MQ
Sbjct: 243 DVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQ 302

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +  ++VS L AC+++G L  GR  H +I R R      LGTA +DMYSKCG++ 
Sbjct: 303 ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLA 361

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + +R++  W ++I     +G G+ +L LF  M + G+RP+  TF S+L    
Sbjct: 362 SAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG+  F  M   + I P  +HY CLVDL  R+G ++EA D++  M  +P    W
Sbjct: 422 HSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIW 481

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ C   K  E+GE  +  ++EL+  + G   L+SN+YA +K WD+V  VR++MK  
Sbjct: 482 VALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDS 541

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G KK+PGCS IE+    H F   D++HP+  EI   + ++   ++  GY+  T  V +D+
Sbjct: 542 GSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDL 601

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE KE  L  HSE++AIAFGL++   G  + I+KNLRVC DCHD  K ISK+ +REI+V
Sbjct: 602 EEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVV 661

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC+ YW
Sbjct: 662 RDAKRFHHFKDGVCSCRDYW 681



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           + FD  ++ DV   ++++   A+ G +  A K+F  MP RD + W+ M+AG+   G+  +
Sbjct: 133 RAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLD 192

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A+ ++  M+   VK +EV M+ V+ ACT    +  G   H ++ R+ ++M V   T+LVD
Sbjct: 193 AIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+K G ++ A   F  M  RN  +W+++I G A NG  +++L LF  M+ +G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            VS L  C  +G ++ GR     + R +     L      +D+Y + G L  A  + N +
Sbjct: 313 LVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAA--IDMYSKCGSLASAQMLFNMI 370

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLL------SNIYAES 305
             +     W A++  C  +   +      +++ E   + +H  +  L      S +  E 
Sbjct: 371 SDRDLI-LWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEG 429

Query: 306 KNW-DRVINVRQIMKAK 321
           K W  R++N  +I  A+
Sbjct: 430 KLWFGRMVNHFKITPAE 446



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 13/222 (5%)

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           +++ G    AL +F  +     + +  +    LSAC  LG L  G            K  
Sbjct: 84  HSRRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V + ++L+ +Y++ G M  A+  F  M  R+  TW++++ G    G    +++++  M++
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
            GV+ +EV  + V++ C     V  G      + R +G+   +     LVD+Y + G LD
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 244 EALDVINKMPMKPHAGAWGALLN----------ACRMYKNTE 275
            A  V   M  +    +W A+++          A R+++N +
Sbjct: 262 VACRVFGLMVHRNDV-SWSAMISGFAQNGQSDEALRLFRNMQ 302


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/462 (42%), Positives = 283/462 (61%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     +KVFD +   + V  TA++S  A  G  + A ++F  MP R+  AW A+
Sbjct: 149 MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTAL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS-VLSACTHLGALDQGRWAHVYIERNR 119
           ++G    G+S  A+ LF  M+   V++++  ++S V+     L A   GR  H    R  
Sbjct: 209 ISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLG 268

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               + +G AL+DMYSKC ++  A + F G+  R+V +WT+++ G A +G  E++L L+ 
Sbjct: 269 FLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD 328

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AG +PNEVTFV ++  C   GLV++GR+ F+SM+ EYGI P L+HY C +DL  R+
Sbjct: 329 RMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRS 388

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA +++  MP +P    WGALL+AC  YK+ EM    S KL+EL  K+   Y+LLS
Sbjct: 389 GHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLS 448

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA +  WD V  VR+ M    ++K PG S IE  RE   F AG+       EI V L 
Sbjct: 449 NVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLE 508

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   ++  GYV +T+ VM+D+EE EKE  L  HSE++A+AFGLI    G  IR+VKNLR
Sbjct: 509 EMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLR 568

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K+IS++ +R+I+VRD +RFHHF+ GKCSC  +W
Sbjct: 569 VCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 8/202 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H P+     A++SA AK   +  A  +FDE P RD   ++++L   +       AL +  
Sbjct: 37  HPPN---PAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILR 93

Query: 79  LMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M   D +  +   + SV S    L +   GR  H +   +       + ++LVDMY KC
Sbjct: 94  CMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC 153

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+ +     F  M  +N   WT+++ G A NG  E++L+LF  M       N   + +++
Sbjct: 154 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR----NLFAWTALI 209

Query: 198 RGCCVVGLVEEGREHFDSMRRE 219
            G    G      E F  MRR+
Sbjct: 210 SGLVNTGESVGAVELFVEMRRD 231


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/462 (41%), Positives = 282/462 (61%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     +KVFD I   + V  TA+IS  A  G    A  +F  MP      W A+
Sbjct: 147 MYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTAL 206

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G+ + G    A+ LF  M+  D+++++   + +V+     L AL  GR  H ++ R  
Sbjct: 207 ISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLG 266

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
              ++ +G ALVDMYSKC +++ A + F G+  R+V +WT+++ G A +G  E+   L++
Sbjct: 267 FLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYN 326

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AG++PNEVTFV ++  C   GLV++GR+ FDSM+REYG++P ++HY C +DL  R+
Sbjct: 327 RMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRS 386

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA  +I  MP +P    WGALL+AC+ + +T+M    +  L+EL  K+   Y+LLS
Sbjct: 387 GYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLS 446

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA +  WD V  VR+IM    ++K+PG S +E  RE   F AG+       EI   L 
Sbjct: 447 NVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLE 506

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   ++  GYV +T+ VM+D+EE EKE  L  HSE++A+AFG++    G  IR+VKNLR
Sbjct: 507 ELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLR 566

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K IS +  R+IIVRD +RFHHF++G CSC  +W
Sbjct: 567 VCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 5/192 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKL 87
           ++SA A+   +  AR+ FD+ P RD   ++A+LA  +        L L   M   D ++ 
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRP 101

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +   + S+ SA   L +L  GR  H +   +       + ++L+DMY KCG    A   F
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVF 161

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +  +N   WT++I G A NG   ++L+LF  M   G+     T+ +++ G    G   
Sbjct: 162 DSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL----FTWTALISGFVKAGNYT 217

Query: 208 EGREHFDSMRRE 219
                F  MRR+
Sbjct: 218 GAMGLFVEMRRD 229


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 271/435 (62%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +I +  KC  +  A ++F+E    D IA  +M+   +QC     A+ LF  M    ++
Sbjct: 350 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 409

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +   + S+L+AC  L A +QG+  H ++ + +       G ALV  Y+KCG++  A   
Sbjct: 410 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 469

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  + ER V +W+++IGGLA +G G+++LELF  M   G+ PN +T  SVL  C   GLV
Sbjct: 470 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 529

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +E + +F+SM+  +GI+   EHY C++DL GRAG+LD+A++++N MP + +A  WGALL 
Sbjct: 530 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLG 589

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           A R++K+ E+G+LA+ KL  LE +  G +VLL+N YA S  W+ V  VR++MK   +KK 
Sbjct: 590 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 649

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           P  S +EV  +VH F  GD++HP   EI   L E+   +  AGY+ N +  ++D++  EK
Sbjct: 650 PAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEK 709

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E  L  HSE++A+AF L+S   G PIR+ KNLR+C DCH   K IS + +REII+RD NR
Sbjct: 710 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINR 769

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF++G CSC  YW
Sbjct: 770 FHHFRDGTCSCGDYW 784



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 133/268 (49%), Gaps = 6/268 (2%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEM-PERDPIAWNAML 61
           A+LG   +   +  G    DV    A+++     G +D AR++FDE   ER+ ++WN ++
Sbjct: 23  AQLGAQVHAMAMATGFGS-DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLM 81

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           + Y +  +  +A+ +F  M    ++  E     V++ACT    +D GR  H  + R   +
Sbjct: 82  SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE 141

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             V    ALVDMY K G ++ A   F  M + +V +W ++I G  +NG   +++EL   M
Sbjct: 142 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 201

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAG 240
           K +G+ PN     S+L+ C   G  + GR+    M +        ++ G  LVD+Y +  
Sbjct: 202 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD--DYIGVGLVDMYAKNH 259

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNAC 268
            LD+A+ V + M  +     W AL++ C
Sbjct: 260 FLDDAMKVFDWMSHRDLI-LWNALISGC 286



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E DV    A++    K G VD+A  +F++MP+ D ++WNA+++G    G    A+ L  
Sbjct: 140 YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 199

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   +  N   + S+L AC   GA D GR  H ++ +        +G  LVDMY+K  
Sbjct: 200 QMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 259

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ AM  F  M  R++  W ++I G +  G  +++  +F  +++ G+  N  T  +VL+
Sbjct: 260 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 319

Query: 199 GCCVVGLVEEGRE 211
               +      R+
Sbjct: 320 STASLEAASATRQ 332



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 129/275 (46%), Gaps = 5/275 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D      ++   AK   +D A K+FD M  RD I WNA+++G +  G+  EA  +F+ 
Sbjct: 242 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYG 301

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++   + +N  ++ +VL +   L A    R  H   E+        +   L+D Y KC  
Sbjct: 302 LRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSC 361

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           ++ A+  F      ++   TS+I  L+    GE +++LF  M + G+ P+     S+L  
Sbjct: 362 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 421

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++R++  + +  +   LV  Y + G +++A    + +P +   
Sbjct: 422 CASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFSSLPERGVV 479

Query: 259 GAWGALLNACRMYKNTEMG-ELASRKLVELETKNH 292
            +W A++     + + +   EL  R + E    NH
Sbjct: 480 -SWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 513



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A++   AKCG ++ A   F  +PER  ++W+AM+ G AQ G  + AL LF  M 
Sbjct: 446 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 505

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              +  N ++M SVL AC H G +D+  R+ +   E   +  T    + ++D+  + G +
Sbjct: 506 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 565

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
           + AM+    M  + N   W +++G 
Sbjct: 566 DDAMELVNSMPFQANASVWGALLGA 590


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/471 (40%), Positives = 291/471 (61%), Gaps = 12/471 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   +++F  + E  VV  T ++    K   +   R++FDEMPER+ +AW  M
Sbjct: 155 MYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLM 214

Query: 61  LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY   G +RE L L   M       LN V++ S+LSAC   G L  GRW HVY  +  
Sbjct: 215 VAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKA 274

Query: 120 LKMT-------VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
           + M        V +GTALVDMY+KCGN++ ++  F  M++RNV TW ++  GLAM+G G 
Sbjct: 275 MMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGR 334

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
             +++F  M +  V+P+++TF ++L  C  +G+V+EG   F S++  YG+EP ++HY C+
Sbjct: 335 MVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDEGWRCFHSLQF-YGLEPKVDHYACM 392

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292
           VD+ GRAGR++EA  ++ +MP+ P+    G+LL +C ++   E+ E   R+L+++   + 
Sbjct: 393 VDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQMSPGHT 452

Query: 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN 352
              +L+SN+Y      D    +R  ++ +G++K+PG S I V+  VH F +GD +HPR  
Sbjct: 453 EYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTK 512

Query: 353 EIEVMLGEISRRLKLAGYVANTNPVMYDIEE--EEKEDTLCKHSEKVAIAFGLISLKEGV 410
           E+ + L E+  R++ AGYV + + ++   E   EEKE  LC HSEK+A+ FGL+  K   
Sbjct: 513 EVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKLAVCFGLLETKPRT 572

Query: 411 PIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           P+ + KNLR+C DCH   K++SKV++REII+RDRNRFH FK G CSC  YW
Sbjct: 573 PLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 41/296 (13%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFH 78
           P      A+    A  G++  A+K+FDE+P  ++D + W  +L+ +++ G    ++ LF 
Sbjct: 41  PRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFV 100

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V+++ VS+V +   C  L  L  G   H    +     +V +  AL+DMY KCG
Sbjct: 101 EMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCG 160

Query: 139 -------------------------------NMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
                                           + +  + F  M ERNV  WT ++ G   
Sbjct: 161 FVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLG 220

Query: 168 NGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPW 225
            G   + LEL + ++ + G   N VT  S+L  C   G +  GR  H  ++++   +   
Sbjct: 221 AGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEE 280

Query: 226 LEHYG-----CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
             + G      LVD+Y + G +D ++ V   M  K +   W AL +   M+    M
Sbjct: 281 ETYDGVMVGTALVDMYAKCGNIDSSIKVFRLM-RKRNVVTWNALFSGLAMHGKGRM 335



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVT--LGTALVDMYSKCGNMNKAMDFF--WGM 150
           +L    H   L  GR  H  +  + LK      L  AL   Y+  G +  A   F    +
Sbjct: 12  LLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPL 71

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            +++   WT+++   +  G    S++LF  M++  V  + V+ V +   C  +  +  G 
Sbjct: 72  SDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFG- 130

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           E    +  + G    ++    L+D+YG+ G + E   +   +  K    +W  +L+    
Sbjct: 131 EQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVV-SWTVVLDTLVK 189

Query: 271 YKNTEMG 277
           ++  + G
Sbjct: 190 WEGLKRG 196


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 284/449 (63%), Gaps = 1/449 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    E DV  Q  +I+   KCG ++ A  +F++M E+   +W++++  +A      E 
Sbjct: 156 VFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHEC 215

Query: 74  LHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           L L   M        E S +VS LSACTHLG+ + GR  H  + RN  ++ V + T+L+D
Sbjct: 216 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLID 275

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY K G++ K +  F  M ++N Y++T +I GLA++G G ++L +FS M + G+ P++V 
Sbjct: 276 MYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVV 335

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +V VL  C   GLV EG + F+ ++ E+ I+P ++HYGC+VDL GRAG L  A D+I  M
Sbjct: 336 YVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSM 395

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P+KP+   W +LL+AC+++ N E+GE+A+  + +L   N G Y++L+N+YA +K W  V 
Sbjct: 396 PIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVA 455

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            +R  M  K + + PG S++E +R V++F + D++ P+   I  M+ ++  +LK  GY  
Sbjct: 456 RIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTP 515

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           + + V+ D++E+EK   L  HS+K+AIAF LI   EG  IRI +N+R+C DCH  TK IS
Sbjct: 516 DMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFIS 575

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            ++ REI VRDRNRFHHFK+G CSCK YW
Sbjct: 576 VIYEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 4/237 (1%)

Query: 22  DVVCQTAMISACA--KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D  C + +++ CA  + G ++ A  +F ++ E     +N M+ G        EAL L+  
Sbjct: 61  DSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVE 120

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    ++ +  +   VL AC+ LGAL +G   H ++ +  L+  V +   L++MY KCG 
Sbjct: 121 MLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGA 180

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLR 198
           +  A   F  M E++V +W+S+IG  A      + L L   M   G  R  E   VS L 
Sbjct: 181 IEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALS 240

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +G    GR     + R    E  +     L+D+Y ++G L++ L V   M  K
Sbjct: 241 ACTHLGSPNFGRCIHGILLRNIS-ELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQK 296


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/447 (41%), Positives = 277/447 (61%), Gaps = 6/447 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLF 77
           E D     A ++  AKCG +  AR +F+ +    RD I WN+MLA Y   G  +EA  LF
Sbjct: 490 EGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELF 549

Query: 78  HLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
             M+    VK N+V+ V+VL A T   ++ QGR  H  +  N  +    +  AL++MY+K
Sbjct: 550 QAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAK 609

Query: 137 CGNMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           CG+++ A   F      + +V  WTS+I G A  G  E++L+LF  M+Q GVRPN VTF+
Sbjct: 610 CGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFI 669

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           S L  C   G +E+G E    M  ++GI P  +H+ C+VDL GR GRLDEA  ++ +   
Sbjct: 670 SALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS- 728

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +     W ALL+AC+  K  E GE  + ++++L+ +   +Y++L+++YA +  W+    +
Sbjct: 729 QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATI 788

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R+ M  KG++  PGCS +EV++E+H F AGD++HP+  EI + L  +   +K AGYVA+T
Sbjct: 789 RKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADT 848

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
             V++D+ +E KE  L +HSEK+AIAFGL+S   G P+R++KNLRVC DCH  TK+ISKV
Sbjct: 849 GLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKV 908

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
             R+I++RD +R+HHF  G CSC  YW
Sbjct: 909 TGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 8/261 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V  T +++  A+  D+  AR  FD +   D ++WNAM A Y Q  +SREAL LF  M 
Sbjct: 388 DNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERML 447

Query: 82  IHDVKLNEVSMVSVLSACTHL---GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           +  V+ +  + ++ L+AC       A   G+     +E   L+    +  A ++MY+KCG
Sbjct: 448 LEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCG 507

Query: 139 NMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVS 195
           ++  A   F  +    R+  TW S++     +G G+++ ELF  M+ +  V+PN+VTFV+
Sbjct: 508 SLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVA 567

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM- 254
           VL        + +GRE   +     G E        L+++Y + G LD+A  + +K    
Sbjct: 568 VLDASTSRTSIAQGRE-IHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSN 626

Query: 255 KPHAGAWGALLNACRMYKNTE 275
           +    AW +L+     Y   E
Sbjct: 627 QEDVIAWTSLIAGYAQYGQAE 647



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           AKCG++  A  + D        +  AM+  + + G+  +A+ LF  M+   V+ N  +++
Sbjct: 91  AKCGNLAEAEALADRFAS--VYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALI 145

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM---NKAMDFFWGM 150
           ++++AC+ LG L  GR  H  I     +    LG AL+ MYSKCG++    +A D     
Sbjct: 146 ALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 205

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLRGCCVVGLVE-E 208
            +R+V TW ++I     NG+  ++L+LF  M + G   PN VTFVSVL  C   GL+  E
Sbjct: 206 SKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLE 265

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV-INKMPMKPHAG--AWGALL 265
                       GIE        LVD YG+ G LD+A +V + K   +P        A++
Sbjct: 266 DVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMI 325

Query: 266 NAC 268
           +AC
Sbjct: 326 SAC 328



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 10/202 (4%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCG 68
            ++ D   E + V   A+IS  +KCG +  A++ FD +P   +RD + WNAM++ + + G
Sbjct: 165 SQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNG 224

Query: 69  KSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVT 125
            +REAL LF  M        N V+ VSVL +C   G  +L+  R  H  I    ++    
Sbjct: 225 SAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAF 284

Query: 126 LGTALVDMYSKCGNMNKAMDFFW--GMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
           + TALVD Y K G+++ A + F   G +E   ++ T +++I     NG  ++SL LF  M
Sbjct: 285 VRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAM 344

Query: 182 KQAGVRPNEVTFVSVLRGCCVV 203
              G +P+ VT VSVL  C ++
Sbjct: 345 NLEGTKPSGVTLVSVLNACSML 366



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 14/259 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMF----DEMPERDPIAWNAMLAGYAQCGKSREALH 75
           E +   +TA++ +  K G +D A ++F    DE P    +  +AM++   Q G  +E+L 
Sbjct: 280 EREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLR 339

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT----LGTALV 131
           LF  M +   K + V++VSVL+AC+ L     G      +E+    ++ T    LGT L+
Sbjct: 340 LFFAMNLEGTKPSGVTLVSVLNACSMLQV---GSATAFVLEQAMEVVSATRDNVLGTTLL 396

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
             Y++  ++ +A   F  ++  +V +W ++      +    ++L LF  M   GVRP+  
Sbjct: 397 TTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVA 456

Query: 192 TFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           TF++ L  C            +   S+  E G+E         +++Y + G L +A  V 
Sbjct: 457 TFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVF 516

Query: 250 NKM-PMKPHAGAWGALLNA 267
            ++ P +     W ++L A
Sbjct: 517 ERISPARRDCITWNSMLAA 535



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 16/180 (8%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           +L AC  L AL QG+  H +I   R+ +     L + L+ M++KCGN+ +A      + +
Sbjct: 49  LLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAE----ALAD 104

Query: 153 R--NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
           R  +VY+ T++I     +G  +K++ELF  M+   VRPN    ++++  C  +G +  GR
Sbjct: 105 RFASVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLAAGR 161

Query: 211 E-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP--MKPHAGAWGALLNA 267
             H     R++     L +   L+ +Y + G L +A    +++P   K     W A+++A
Sbjct: 162 RIHSQISDRDFEENSVLGN--ALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/433 (41%), Positives = 273/433 (63%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I +  KC  +  A K+F+E    + IA+ +M+   +QC    +A+ LF  M    ++ +
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
              + S+L+AC  L A +QG+  H ++ + +    V  G ALV  Y+KCG++  A   F 
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFS 566

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           G+ ++ V +W+++IGGLA +G G+++L++F  M    + PN +T  SVL  C   GLV+E
Sbjct: 567 GLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDE 626

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            + +F SM+  +GI+   EHY C++DL GRAG+LD+A++++N MP + +A  WGALL A 
Sbjct: 627 AKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAAS 686

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R++++ E+G+LA+ KL  LE +  G +VLL+N YA +  WD V  VR++MK   VKK P 
Sbjct: 687 RVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPA 746

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKED 388
            S +E+   VH F  GD++HPR  +I   L E+   +  AGYV N    ++D+++ EKE 
Sbjct: 747 MSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKEL 806

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
            L  HSE++A+AF LIS   G PIR+ KNLR+C DCH   K ISK+ +REII+RD NRFH
Sbjct: 807 LLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFH 866

Query: 449 HFKEGKCSCKGYW 461
           HF +G CSC  YW
Sbjct: 867 HFSDGACSCGDYW 879



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 13/254 (5%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D+    A+++     G VD AR++FDE   +R+ ++WN M++ + +  +  +A+ LF  M
Sbjct: 134 DIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEM 193

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
               V+ NE     V++ACT    L+ GR  H  + R      V    ALVDMYSK G++
Sbjct: 194 VWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  + + +V +W + I G  ++G  + +LEL   MK +G+ PN  T  S+L+  
Sbjct: 254 HMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK-- 311

Query: 201 CVVGLVEEGREHFDSMRREYGI-----EPWLEHYG-CLVDLYGRAGRLDEALDVINKMPM 254
                   G   F   R+ +G          ++ G  LVD+Y + G LD+A  V   +P 
Sbjct: 312 ---ACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPR 368

Query: 255 KPHAGAWGALLNAC 268
           K     W AL++ C
Sbjct: 369 KDLL-LWNALISGC 381



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 6/248 (2%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++S  +KC     AR++FDE P+   ++W++++  Y+     REAL  F  M+   V+ N
Sbjct: 43  LLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCN 102

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF- 147
           E ++  VL      G    G   H       L   + +  ALV MY   G +++A   F 
Sbjct: 103 EFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFD 159

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
              ++RN  +W  ++     N     ++ELF  M  +GVRPNE  F  V+  C     +E
Sbjct: 160 EAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLE 219

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            GR+   +M    G +  +     LVD+Y + G +  A  V  K+P K    +W A ++ 
Sbjct: 220 AGRK-VHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFISG 277

Query: 268 CRMYKNTE 275
           C ++ + +
Sbjct: 278 CVLHGHDQ 285



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 128/268 (47%), Gaps = 4/268 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D     A++   AK G +D ARK+F+ +P +D + WNA+++G +  G   E+L LF  
Sbjct: 337 DSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCR 396

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+     +N  ++ +VL +   L A+      H   E+        +   L+D Y KC  
Sbjct: 397 MRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNC 456

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F      N+  +TS+I  L+    GE +++LF  M + G+ P+     S+L  
Sbjct: 457 LRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA 516

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +   E+G++ H   ++R++  + +  +   LV  Y + G +++A    + +P K   
Sbjct: 517 CASLSAYEQGKQVHAHLIKRKFMTDVFAGN--ALVYTYAKCGSIEDADLAFSGLPDKG-V 573

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVE 286
            +W A++     + + +      R++V+
Sbjct: 574 VSWSAMIGGLAQHGHGKRALDVFRRMVD 601



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 2/182 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV    A++   +K GD+ +A  +F ++P+ D ++WNA ++G    G  + AL L  
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 79  LMQIHDVKLNEVSMVSVL--SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            M+   +  N  ++ S+L   A    GA   GR  H ++ +        +G ALVDMY+K
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAK 352

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G ++ A   F  +  +++  W ++I G +  G   +SL LF  M++ G   N  T  +V
Sbjct: 353 YGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAV 412

Query: 197 LR 198
           L+
Sbjct: 413 LK 414



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A++   AKCG ++ A   F  +P++  ++W+AM+ G AQ G  + AL +F  M 
Sbjct: 541 DVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMV 600

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
              +  N +++ SVL AC H G +D+ + +     E   +  T    + ++D+  + G +
Sbjct: 601 DERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKL 660

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
           + AM+    M  E N   W +++  
Sbjct: 661 DDAMELVNSMPFEANAAVWGALLAA 685


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/442 (43%), Positives = 275/442 (62%), Gaps = 2/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV  ++++I A  K GD+D  R +FDEM   D + WN+++AG+AQ G    A+ LF  
Sbjct: 203 DSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMR 262

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+      N+ ++ SVL ACT +  L+ GR  H ++ +      + L  AL+DMY KCG 
Sbjct: 263 MKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLK--YDRDLILHNALLDMYCKCGC 320

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M +R+V +W+++I GLA NG   ++L++F LMK  G  PN +T V VL  
Sbjct: 321 LLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFA 380

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLVE+G  +F SM + +GI+P  EH  C+VDL GRAG+LDEA+  I +M  +P + 
Sbjct: 381 CSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSV 440

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL ACRM+KN  +   A+ ++++LE ++ GA +LLSNIYA+ + W       + M+
Sbjct: 441 IWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMR 500

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +GVKK PG S IE+ + VH F AG+ +HP  + I   L  + RR K  GYV  T  V+ 
Sbjct: 501 DQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQ 560

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+  E+KED L  HSEK+AIAFG ++  EG P+RI+KNLR+C DCH   K++SK   + I
Sbjct: 561 DLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAI 620

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           I+RD  RFHHF+ G CSC  YW
Sbjct: 621 IIRDPVRFHHFQHGVCSCGDYW 642



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-GKSREALHLFHLMQIHD 84
             +++S  AK G +D A ++F  MP+R+ ++W  ++A  A   G+ +EAL     M+   
Sbjct: 110 SNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDG 169

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V  N  +  SVL AC   G L      H  I +  L   V + ++L+D Y K G+++   
Sbjct: 170 VAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGR 226

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M   ++  W S+I G A +G G  ++ELF  MK++G   N+ T  SVLR C  + 
Sbjct: 227 GVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMV 286

Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           ++E GR+ H   ++ +      L  +  L+D+Y + G L +A  + ++M
Sbjct: 287 MLEVGRQVHAHVLKYDRD----LILHNALLDMYCKCGCLLDADALFSRM 331



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 6/154 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ D++   A++    KCG +  A  +F  M +RD I+W+ M++G AQ G+S EAL +F 
Sbjct: 301 YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFD 360

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL---KMTVTLGTALVDMYS 135
           LM+      N ++MV VL AC+H G ++ G W H +   ++L   +        +VD+  
Sbjct: 361 LMKAEGPTPNNITMVGVLFACSHAGLVEDG-W-HYFRSMDKLFGIQPEREHCNCMVDLLG 418

Query: 136 KCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           + G +++AM F   MK E +   W +++G   M+
Sbjct: 419 RAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMH 452



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 13/193 (6%)

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE------RNRLK 121
           G    AL L   +    V+ + VS+  ++  C   G +  GR  H ++            
Sbjct: 45  GPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATH 104

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK--SLELFS 179
            ++ +  +LV MY+K G ++ A++ F GM +RNV +WT+V+  LA N  G K  +L    
Sbjct: 105 GSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALA-NAPGRKKEALRFLV 163

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M++ GV  N  TF SVL  C   G++     H D ++   G++  +     L+D Y + 
Sbjct: 164 EMRRDGVAANSYTFSSVLGACGTPGVLAA--MHADIIK--VGLDSDVFVRSSLIDAYMKL 219

Query: 240 GRLDEALDVINKM 252
           G LD    V ++M
Sbjct: 220 GDLDSGRGVFDEM 232


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/462 (42%), Positives = 283/462 (61%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     +KVFD +   + V  TA++S  A  G  + A ++F  MP R+  AW A+
Sbjct: 231 MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTAL 290

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS-VLSACTHLGALDQGRWAHVYIERNR 119
           ++G    G+S  A+ LF  M+   V++++  ++S V+     L A   GR  H    R  
Sbjct: 291 ISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLG 350

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               + +G AL+DMYSKC ++  A + F G+  R+V +WT+++ G A +G  E++L L+ 
Sbjct: 351 FLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD 410

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AG +PNEVTFV ++  C   GLV++GR+ F+SM+ EYGI P L+HY C +DL  R+
Sbjct: 411 RMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRS 470

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA +++  MP +P    WGALL+AC  YK+ EM    S KL+EL  K+   Y+LLS
Sbjct: 471 GHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLS 530

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA +  WD V  VR+ M    ++K PG S IE  RE   F AG+       EI V L 
Sbjct: 531 NVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLE 590

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   ++  GYV +T+ VM+D+EE EKE  L  HSE++A+AFGLI    G  IR+VKNLR
Sbjct: 591 EMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLR 650

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K+IS++ +R+I+VRD +RFHHF+ GKCSC  +W
Sbjct: 651 VCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 8/202 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H P+     A++SA AK   +  A  +FDE P RD   ++++L   +       AL +  
Sbjct: 119 HPPN---PAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILR 175

Query: 79  LMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M   D +  +   + SV S    L +   GR  H +   +       + ++LVDMY KC
Sbjct: 176 CMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC 235

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+ +     F  M  +N   WT+++ G A NG  E++L+LF  M       N   + +++
Sbjct: 236 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR----NLFAWTALI 291

Query: 198 RGCCVVGLVEEGREHFDSMRRE 219
            G    G      E F  MRR+
Sbjct: 292 SGLVNTGESVGAVELFVEMRRD 313


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/433 (43%), Positives = 279/433 (64%), Gaps = 3/433 (0%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I +  + G+ ++A+K+F +MP+RD + WN+M+ GY + GK  EAL  F  M   +V+ +
Sbjct: 85  VIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPD 144

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
           + +  SV++AC  LGAL+  +W H  + + R+++   L +AL+DMYSKCG +  A + F 
Sbjct: 145 KFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFE 204

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            ++  +V  W S+I GLA++G    ++ +FS M+   V P+ +TF+ +L+ C   GLV+E
Sbjct: 205 SVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKE 264

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           GR++FD M   Y I+P LEHYG +VDL GRAG LDEA  +I  MPM+P    W  LL+AC
Sbjct: 265 GRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSAC 324

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R ++NTE+GE+A   +  +     G YVLLSNIY     WD    VR++MK +GV+K  G
Sbjct: 325 RTHRNTELGEVA---VANISGPKSGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRG 381

Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKED 388
            S  E +  VH F AGD++HP    +  +L  + +R KL G+V +T  VM D+ EEEKE+
Sbjct: 382 KSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRTKLEGFVPSTELVMMDVSEEEKEE 441

Query: 389 TLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFH 448
            L  HSEK+A+A+G++    G  IRI KNLR+C+DCH+  KM+S + +R II+RDR RFH
Sbjct: 442 NLYHHSEKLALAYGILKTSPGTEIRIYKNLRICYDCHNWIKMVSGLLSRVIIIRDRIRFH 501

Query: 449 HFKEGKCSCKGYW 461
            F+ G CSC  YW
Sbjct: 502 RFEGGSCSCGDYW 514



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 84/162 (51%), Gaps = 6/162 (3%)

Query: 3   AELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A LG L + Q + D +     E + +  +A+I   +KCG ++ A+++F+ +   D   WN
Sbjct: 156 ARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWN 215

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER- 117
           +++ G A  G + +A+ +F  M+  +V  + ++ + +L AC+H G + +GR     +E  
Sbjct: 216 SLINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENY 275

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTW 158
             +K  +    A+VD+  + G +++A      M  E +V  W
Sbjct: 276 YSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVW 317


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/450 (40%), Positives = 269/450 (59%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           ++VFD +   D++   A++S       ++ A  +F EMPER+ + W  M++G AQ G   
Sbjct: 346 RRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGE 405

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           E L LF+ M+   ++  + +    ++AC+ LG+LD G+  H  + R      ++ G AL+
Sbjct: 406 EGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALI 465

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
            MYS+CG +  A   F  M   +  +W ++I  LA +G G K++ELF  M +  + P+ +
Sbjct: 466 TMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRI 525

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TF+++L  C   GL++EGR +FD+M   YGI P  +HY  L+DL  RAG   +A  VI  
Sbjct: 526 TFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKS 585

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP +  A  W ALL  CR++ N E+G  A+ +L+EL     G Y++LSN+YA    WD V
Sbjct: 586 MPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEV 645

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR +M+ +GVKK PGCS +EV+  VH F   D  HP    +   L ++   +K  GYV
Sbjct: 646 ARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYV 705

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +T  V++D+E E KE +L  HSEK+A+ +G++ L  G  IR+ KNLR+C DCH+  K I
Sbjct: 706 PDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYI 765

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SKV  REI+VRDR RFHHFK G+CSC  YW
Sbjct: 766 SKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 49/304 (16%)

Query: 8   LGYCQKVFD-----GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
           +   +KVFD      I+EP     T MI+   +  D+  AR++ D +     +AWNAM++
Sbjct: 200 MASARKVFDETPKNQIYEPS---WTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMIS 256

Query: 63  GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC----THLGALDQGRWAHVYIERN 118
           GY + G   EA   F  M    ++ +E +  S++SAC      +G  + GR  H YI R 
Sbjct: 257 GYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRT 316

Query: 119 RLK----MTVTLGTALVDMYSKCGNM-------------------------------NKA 143
            ++      +++  AL+  Y+K   M                                +A
Sbjct: 317 VVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEA 376

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M ERNV TWT +I GLA NG GE+ L+LF+ MK  G+ P +  F   +  C V+
Sbjct: 377 NSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVL 436

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G ++ G++    + R  G +  L     L+ +Y R G ++ A  V   MP      +W A
Sbjct: 437 GSLDNGQQIHSQVIR-LGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSV-SWNA 494

Query: 264 LLNA 267
           ++ A
Sbjct: 495 MIAA 498



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 174/397 (43%), Gaps = 74/397 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWN 58
           +Y +   + Y +K+FD I +PD+V +T ++SA +  G+V LA+++F+  P   RD +++N
Sbjct: 49  IYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYN 108

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR---WAHVYI 115
           AM+  Y+       AL+LF  M+ +    +  +  SVLSA + +   D+ R     H  +
Sbjct: 109 AMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIA--DEERHCQMLHCEV 166

Query: 116 ERNRLKMTVTLGTALVDMYSKCGN---------MNKAMDFFWGMKERNVY--TWTSVIGG 164
            +    +  ++  AL+  Y  C +         M  A   F    +  +Y  +WT++I G
Sbjct: 167 IKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAG 226

Query: 165 LAMN-------------------------------GAGEKSLELFSLMKQAGVRPNEVTF 193
              N                               G  E++ + F  M   G++ +E T+
Sbjct: 227 YVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTY 286

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYG------IEPW----LEHYGCLVDLYGRAGRLD 243
            S++  C   G   E    F+  R+ +G      +EP     L     L+  Y +  R+ 
Sbjct: 287 TSLISAC---GSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMI 343

Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           EA  V +KMP++    +W A+L+    Y N +  E A+    E+  +N   + ++ +  A
Sbjct: 344 EARRVFDKMPVR-DIISWNAVLSG---YVNAQRIEEANSIFSEMPERNVLTWTVMISGLA 399

Query: 304 ESKNWDRVINVRQIMKAKGVKK--------LPGCSVI 332
           ++   +  + +   MK++G++         +  CSV+
Sbjct: 400 QNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVL 436


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/462 (42%), Positives = 285/462 (61%), Gaps = 1/462 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     +KVFD I   + V  TA++S  A  G    A  +F  MPER   AW A+
Sbjct: 55  MYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTAL 114

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G+ + G +  A+ LF  M+   V++++   + +V+     L AL  GR  H +     
Sbjct: 115 ISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGFAITLG 174

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
              ++ +G ALVDMYSKC +++ A + F G+  R+V +WT+++ G A +G  E+ L L+ 
Sbjct: 175 FLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYD 234

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  AG++PNEVTFV ++  C   GLV++GR+ FDSM+REYGI+P L+HY C +DL  R+
Sbjct: 235 RMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRS 294

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA ++I  MP +P   +WGALL+AC+ + +T+M    +  L+EL  K+   Y+LLS
Sbjct: 295 GYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLS 354

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
           N+YA +  WD V  VR+IM    ++K PG S IE  RE   F AG+       EI   L 
Sbjct: 355 NVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIEAGRESRMFHAGEVPLDIGEEITRFLE 414

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+   ++  GYV +T+ VM+D+EE EKE  L  HSE++A+AFG++    G  IR+VKNLR
Sbjct: 415 ELVSEMRKRGYVPDTSSVMHDLEENEKEQHLFLHSERLAVAFGILKSPPGSVIRVVKNLR 474

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           VC DCH V K IS++  R+IIVRD +RFHHF++G CSC  +W
Sbjct: 475 VCGDCHTVMKFISEIAQRKIIVRDASRFHHFEDGNCSCSEFW 516



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           GR  H +   +       + ++L+DMY KCG    A   F  +  +N   WT+++ G A 
Sbjct: 30  GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89

Query: 168 NGAGEKSLELFSLMKQAGV 186
           NG   ++++LF  M + G+
Sbjct: 90  NGCTGEAIDLFRSMPERGL 108


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/462 (40%), Positives = 288/462 (62%), Gaps = 12/462 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G L   + VF  + E D+V  T+MI+A ++ G++  AR+ FD M  R+ I WNAM
Sbjct: 415 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAM 474

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L  Y Q G   + L ++  ++   DV  + V+ V++   C  +GA   G     +  +  
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 534

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L + V++  A + MYSKCG +++A   F  +  ++V +W ++I G + +G G+++ + F 
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G +P+ +++V+VL GC   GLV+EG+ +FD M R +GI P LEH+ C+VDL GRA
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 654

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I+KMPMKP A  WGALL+AC+++ N E+ ELA++ + EL++ + G+Y+LL+
Sbjct: 655 GHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLA 714

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IY+++   D    VR++M+ KG+KK PG S +EV+ +VH F A D +HP+   I   L 
Sbjct: 715 KIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLD 774

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++   GYV   +P            +   HSEK+A+AFG++SL   +PI I+KNLR
Sbjct: 775 ELMEKIAHLGYVRTESP-----------RSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLR 823

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+IS V +RE ++RD  RFHHFK G CSC  YW
Sbjct: 824 ICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 141/273 (51%), Gaps = 2/273 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+   G + +  ++F  I  P + C+ +M++  AK   +D A + F++M ERD ++WN M
Sbjct: 182 MFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMM 241

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A  +Q G+ REAL L   M    V+L+  +  S L+AC  L +L  G+  H  + R+  
Sbjct: 242 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 301

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   + +AL+++Y+KCG+  +A   F  +++RN  +WT +IGG        KS+ELF+ 
Sbjct: 302 QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 361

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+   +  ++    +++ GC     +  GR+   S+  + G    +     L+ LY + G
Sbjct: 362 MRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCG 420

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            L  A  V + M  +    +W +++ A     N
Sbjct: 421 DLQNAEFVFSSMSERDIV-SWTSMITAYSQIGN 452



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 152/324 (46%), Gaps = 41/324 (12%)

Query: 3   AELGCLGYCQ----KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A L  LG+ +    KV   + + D    +A+I   AKCG    A+++F+ + +R+ ++W 
Sbjct: 281 ARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWT 340

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
            ++ G  Q     +++ LF+ M+   + +++ ++ +++S C +   L  GR  H    ++
Sbjct: 341 VLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS 400

Query: 119 RLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMDFF 147
                + +  +L+ +Y+KC                               GN+ KA +FF
Sbjct: 401 GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFF 460

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLV 206
            GM  RN  TW +++G    +GA E  L+++S ++ Q  V P+ VT+V++ RGC  +G  
Sbjct: 461 DGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGAN 520

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           + G +      +  G+   +      + +Y + GR+ EA  + + +  K    +W A++ 
Sbjct: 521 KLGDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVV-SWNAMIT 578

Query: 267 ACRMYKNTEMGELASRKLVELETK 290
               Y    MG+ A++   ++ +K
Sbjct: 579 G---YSQHGMGKQAAKTFDDMLSK 599



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 37/305 (12%)

Query: 2   YAELGCLGYCQKVFDG-IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           Y   G L   +++    I EP+V+    M++  AK G +  A ++FD MP RD  +WN +
Sbjct: 49  YFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTL 108

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY Q  +  + L  F  M +  D   N  +   V+ +C  LG  +          +  
Sbjct: 109 MSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFD 168

Query: 120 LKMTVTLGTALVDMYSKCG-------------------------------NMNKAMDFFW 148
                 + TALVDM+ +CG                                ++ A+++F 
Sbjct: 169 FWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFE 228

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M ER+V +W  +I  L+ +G   ++L L   M + GVR +  T+ S L  C  +  +  
Sbjct: 229 DMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW 288

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G++ H   +R    I+P++     L++LY + G   EA  V N +  + ++ +W  L+  
Sbjct: 289 GKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGG 345

Query: 268 CRMYK 272
              Y+
Sbjct: 346 SLQYE 350



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 5/151 (3%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG- 149
           ++   L +C   GAL   R  H  +    L   V L   L+  Y  CG ++ A       
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           +KE NV T   ++ G A  G+   + ELF  M     R +  ++ +++ G        +G
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP----RRDVASWNTLMSGYFQARRFLDG 121

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
            E F SM R     P    + C++   G  G
Sbjct: 122 LETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/462 (40%), Positives = 288/462 (62%), Gaps = 12/462 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G L   + VF  + E D+V  T+MI+A ++ G++  AR+ FD M  R+ I WNAM
Sbjct: 405 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAM 464

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L  Y Q G   + L ++  ++   DV  + V+ V++   C  +GA   G     +  +  
Sbjct: 465 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 524

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L + V++  A + MYSKCG +++A   F  +  ++V +W ++I G + +G G+++ + F 
Sbjct: 525 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 584

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G +P+ +++V+VL GC   GLV+EG+ +FD M R +GI P LEH+ C+VDL GRA
Sbjct: 585 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 644

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I+KMPMKP A  WGALL+AC+++ N E+ ELA++ + EL++ + G+Y+LL+
Sbjct: 645 GHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLA 704

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IY+++   D    VR++M+ KG+KK PG S +EV+ +VH F A D +HP+   I   + 
Sbjct: 705 KIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMD 764

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++   GYV   +P            +   HSEK+A+AFG++SL   +PI I+KNLR
Sbjct: 765 ELMEKIAHLGYVRTESP-----------RSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLR 813

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+IS V +RE ++RD  RFHHFK G CSC  YW
Sbjct: 814 ICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 141/273 (51%), Gaps = 2/273 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+   G + +  ++F  I  P + C+ +M++  AK   +D A + F++M ERD ++WN M
Sbjct: 172 MFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMM 231

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A  +Q G+ REAL L   M    V+L+  +  S L+AC  L +L  G+  H  + R+  
Sbjct: 232 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 291

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   + +AL+++Y+KCG+  +A   F  +++RN  +WT +IGG        KS+ELF+ 
Sbjct: 292 QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 351

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+   +  ++    +++ GC     +  GR+   S+  + G    +     L+ LY + G
Sbjct: 352 MRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCG 410

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            L  A  V + M  +    +W +++ A     N
Sbjct: 411 DLQNAEFVFSSMSERDIV-SWTSMITAYSQIGN 442



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 152/324 (46%), Gaps = 41/324 (12%)

Query: 3   AELGCLGYCQ----KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A L  LG+ +    KV   + + D    +A+I   AKCG    A+++F+ + +R+ ++W 
Sbjct: 271 ARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWT 330

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
            ++ G  Q     +++ LF+ M+   + +++ ++ +++S C +   L  GR  H    ++
Sbjct: 331 VLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS 390

Query: 119 RLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMDFF 147
                + +  +L+ +Y+KC                               GN+ KA +FF
Sbjct: 391 GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFF 450

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLV 206
            GM  RN  TW +++G    +GA E  L+++S ++ Q  V P+ VT+V++ RGC  +G  
Sbjct: 451 DGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGAN 510

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           + G +      +  G+   +      + +Y + GR+ EA  + + +  K    +W A++ 
Sbjct: 511 KLGDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVV-SWNAMIT 568

Query: 267 ACRMYKNTEMGELASRKLVELETK 290
               Y    MG+ A++   ++ +K
Sbjct: 569 G---YSQHGMGKQAAKTFDDMLSK 589



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 131/286 (45%), Gaps = 25/286 (8%)

Query: 2   YAELGCLGYCQKVFDG-IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           Y   G L   +++    I EP+V+    M++  AK G +  A ++FD MP RD  +WN +
Sbjct: 65  YLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTL 124

Query: 61  LA-------GYAQCGK------SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107
           ++        +  CG       + + L LF           E ++V +   C   G +D 
Sbjct: 125 MSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC---GYVDF 181

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
                  IER     T+    +++  Y+K   ++ A+++F  M ER+V +W  +I  L+ 
Sbjct: 182 ASRLFSQIERP----TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 237

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWL 226
           +G   ++L L   M + GVR +  T+ S L  C  +  +  G++ H   +R    I+P++
Sbjct: 238 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 297

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
                L++LY + G   EA  V N +  + ++ +W  L+     Y+
Sbjct: 298 A--SALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGGSLQYE 340


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/447 (41%), Positives = 277/447 (61%), Gaps = 6/447 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLF 77
           E D     A ++  AKCG +  AR +F+ +    RD I WN+MLA Y   G  +EA  LF
Sbjct: 356 EGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELF 415

Query: 78  HLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
             M+    VK N+V+ V+VL A T   ++ QGR  H  +  N  +    +  AL++MY+K
Sbjct: 416 QAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAK 475

Query: 137 CGNMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           CG+++ A   F      + +V  WTS++ G A  G  E++L+LF  M+Q GVRPN +TF+
Sbjct: 476 CGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFI 535

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           S L  C   G +E+G E    M  ++GI P  +H+ C+VDL GR GRLDEA  ++ +   
Sbjct: 536 SALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS- 594

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
           +     W ALL+AC+  K  E GE  + ++++L+ +   +Y++L+++YA +  W+    +
Sbjct: 595 QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATI 654

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R+ M  KG++  PGCS +EV++E+H F AGD++HP+  EI + L  +   +K AGYVA+T
Sbjct: 655 RKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADT 714

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
             V++D+ +E KE  L +HSEK+AIAFGL+S   G P+R++KNLRVC DCH  TK+ISKV
Sbjct: 715 GLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKV 774

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
             R+I++RD +R+HHF  G CSC  YW
Sbjct: 775 TGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 8/261 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V  T +++  A+  D+  AR  FD +   D ++WNAM A Y Q  + REAL LF  M 
Sbjct: 254 DNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERML 313

Query: 82  IHDVKLNEVSMVSVLSACTHL---GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           +  V+ +  + ++ L+AC       A   G+     +E   L+    +  A ++MY+KCG
Sbjct: 314 LEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCG 373

Query: 139 NMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVS 195
           ++  A   F  +    R+  TW S++     +G G+++ ELF  M+ +  V+PN+VTFV+
Sbjct: 374 SLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVA 433

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM- 254
           VL        + +GRE   +     G E        L+++Y + G LD+A  + +K    
Sbjct: 434 VLDASTSRTSIAQGRE-IHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSN 492

Query: 255 KPHAGAWGALLNACRMYKNTE 275
           +    AW +L+     Y   E
Sbjct: 493 QEDVIAWTSLVAGYAQYGQAE 513



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 12/203 (5%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCG 68
            ++ D   E + V   A+IS  +KCG +  A++ FD +P   +RD + WNAM++ + + G
Sbjct: 31  SQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNG 90

Query: 69  KSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTV 124
            +REAL LF  M  HD     N V+ VSVL +C   G  +L+  R  H  I    ++   
Sbjct: 91  SAREALQLFRDMD-HDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREA 149

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKER----NVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + TALVD Y K G+++ A + F    +     ++ T +++I     NG  ++SL LF  
Sbjct: 150 FVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYA 209

Query: 181 MKQAGVRPNEVTFVSVLRGCCVV 203
           M   G +P+ VT VSVL  C ++
Sbjct: 210 MNLEGTKPSGVTLVSVLNACSML 232



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 8/193 (4%)

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM--- 140
           +V+ N  +++++++AC+ LG L  GR  H  I     +    LG AL+ MYSKCG++   
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDA 61

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLRG 199
            +A D      +R+V TW ++I     NG+  ++L+LF  M   G   PN VTFVSVL  
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 200 CCVVGLVE-EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV-INKMPMKPH 257
           C   GL+  E            GIE        LVD YG+ G LD+A +V + K   +P 
Sbjct: 122 CVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS 181

Query: 258 AG--AWGALLNAC 268
                  A+++AC
Sbjct: 182 TSLVTCSAMISAC 194



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 14/259 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMF----DEMPERDPIAWNAMLAGYAQCGKSREALH 75
           E +   +TA++ +  K G +D A ++F    DE P    +  +AM++   Q G  +E+L 
Sbjct: 146 EREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLR 205

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT----LGTALV 131
           LF+ M +   K + V++VSVL+AC+ L     G      +E+    ++ T    LGT L+
Sbjct: 206 LFYAMNLEGTKPSGVTLVSVLNACSMLPV---GSATAFVLEQAMEVVSATRDNVLGTTLL 262

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
             Y++  ++++A   F  ++  +V +W ++      +    ++L LF  M   GVRP+  
Sbjct: 263 TTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVA 322

Query: 192 TFVSVLRGCCVVGLVEEGR--EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           TF++ L  C            +   S+  E G+E         +++Y + G L +A  V 
Sbjct: 323 TFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVF 382

Query: 250 NKM-PMKPHAGAWGALLNA 267
            ++ P +     W ++L A
Sbjct: 383 ERISPTRRDCITWNSMLAA 401


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/442 (45%), Positives = 288/442 (65%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    TA++   +KCG + +ARK+FD + +R  +AWNAM++GY Q G +   + ++  MQ
Sbjct: 139 DRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQ 198

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                 + ++ V+ LSAC   GALD GR     +   R+ ++V LG+ALV+MY++CG ++
Sbjct: 199 AAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVD 258

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA  +F  ++ERNV TWTS+I G  M+G G ++++LF LM+  G  PN VTFV+VL  C 
Sbjct: 259 KARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACA 318

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK-MPMKPHAGA 260
             GLV EGR+ F  M+R YG+ P +EHY  +VD++GRAG LDEA+  I+  MP +P    
Sbjct: 319 HAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEV 378

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W A+L AC+M+KN  +G   + +L+ LE +N   +VLLSNIYA S     V  VR  M  
Sbjct: 379 WTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIK 438

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + +KK  G S+IE+    H F  G+++HP+  EI   L E+  R+  AGY+  T  V+++
Sbjct: 439 RRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEELIHRITAAGYMPETESVLHE 498

Query: 381 IEEEEKEDTLCKHSEKVAIAFGL-ISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           +EEEE+E  L  HSEK+A+A+GL +S+    PIR++KNLR+C DCH   K +S V NREI
Sbjct: 499 LEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVENREI 558

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD++RFHHFK+GKCSC  YW
Sbjct: 559 VVRDKHRFHHFKDGKCSCLEYW 580



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 102/241 (42%), Gaps = 73/241 (30%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMI------------------------------ 30
           +Y++ G LG  +K+FD I +  VV   AMI                              
Sbjct: 149 LYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMT 208

Query: 31  -----SACAKCGDVDL-----------------------------------ARKMFDEMP 50
                SACA+ G +DL                                   AR+ FD + 
Sbjct: 209 FVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQ 268

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           ER+ + W +M+AGY   G  REA+ LFHLM+      N V+ V+VLSAC H G + +GR 
Sbjct: 269 ERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRD 328

Query: 111 AHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAM 167
           A   ++R   L   V    ++VDM+ + G +++AM F   +   E     WT+V+G   M
Sbjct: 329 AFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKM 388

Query: 168 N 168
           +
Sbjct: 389 H 389


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 279/443 (62%)

Query: 19   HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
            HE ++    A+I   AKC D++ + ++F  + + + ++WN ++ GY++ G    AL +F 
Sbjct: 764  HESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFR 823

Query: 79   LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
             M+   V   +V+  SVL AC    +++     H  IE++       +  +L+D Y+KCG
Sbjct: 824  EMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCG 883

Query: 139  NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
             +  A + F  +KE ++ +W ++I G A++G    + ELF +M +  ++ N++TFV++L 
Sbjct: 884  CIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLS 943

Query: 199  GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             C   GLV +G   FDSMR ++GIEP +EHY C+V L GRAGRL++AL+ I  +P  P A
Sbjct: 944  VCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSA 1003

Query: 259  GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
              W ALL++C ++KN E+G  ++ K++E+E ++   YVLLSN+Y+ + + D+V   R+ M
Sbjct: 1004 MVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSM 1063

Query: 319  KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
            +  GV+K PG S +E+  EVH F  G E HP    I  ML  ++ +    GYV +T+ V+
Sbjct: 1064 RNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVL 1123

Query: 379  YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            +D+EEE+K   L  HSE++A+A+GL+    G PIRI+KNLR C DCH + K+ISK+  +E
Sbjct: 1124 HDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQE 1183

Query: 439  IIVRDRNRFHHFKEGKCSCKGYW 461
            IIVRD NRFHHF+EG CSC  YW
Sbjct: 1184 IIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 142/265 (53%), Gaps = 8/265 (3%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++   AKCG+++ AR  F+ +   D I W+ M++ YAQC ++ +A  LF  M    V  
Sbjct: 672 ALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSP 731

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           NE S+ SVL AC ++  LD G+  H +  +   +  + +G AL+D+Y+KC +M  +++ F
Sbjct: 732 NEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIF 791

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +++ N  +W ++I G + +G GE +L +F  M+ A V   +VT+ SVLR C     + 
Sbjct: 792 SSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASIN 851

Query: 208 E-GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             G+ H    +  +  +  + +   L+D Y + G + +A ++   +  +    +W A+++
Sbjct: 852 HVGQVHCLIEKSTFNSDTIVSN--SLIDSYAKCGCIRDAREIFETL-KECDLVSWNAIIS 908

Query: 267 ACRMYKNTEMGELASRKLVELETKN 291
              ++    M +    +L ++ +KN
Sbjct: 909 GYAVHGQAAMAQ----ELFDMMSKN 929



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 3/235 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H+ +    +A+I A + CG V  AR++FD +  +D +AW AM++ Y++       L +F 
Sbjct: 562 HDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFS 621

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M++   KLN  ++ SVL A   L ++  G+  H    +        +  AL+DMY+KCG
Sbjct: 622 KMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCG 681

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+  A   F  +   +V  W+ +I   A     E++ ELF  M ++ V PNE +  SVL+
Sbjct: 682 NIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQ 741

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            C  + L++ G++ H  +++   G E  L     L+DLY +   ++ +L++ + +
Sbjct: 742 ACANMPLLDLGKQIHNHAIK--IGHESELFVGNALIDLYAKCSDMESSLEIFSSL 794



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+   D+ C   +++   K G    A ++FD +PER+ +++  ++ G+A  G+  EA  L
Sbjct: 459 GLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASAL 518

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  ++    ++N+  + +VL     +  L      H    +        +G+AL+D YS 
Sbjct: 519 FQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSM 578

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++ A   F G+  ++   WT+++   + N   E +L++FS M+ A  + N     SV
Sbjct: 579 CGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSV 638

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           LR    +  V  G+  H  S++  Y  E  +  YG L+D+Y + G +++A
Sbjct: 639 LRAAVCLSSVVLGKGIHACSVKTLYDTERHV--YGALLDMYAKCGNIEDA 686



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 22/183 (12%)

Query: 95  VLSACTHLGALDQGRWAHVYIERN--RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
           +L  C   G    GR  H ++ R+    ++ +     L++MY+K G    A   F G+ E
Sbjct: 434 LLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPE 493

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           RN+ ++ +++ G A+ G  E++  LF  ++  G   N+    +VL+   VV +       
Sbjct: 494 RNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLK--LVVAM------- 544

Query: 213 FDSMRREYGIEPWLEHYG---------CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            D++   +G+       G          L+D Y   G + +A  V + +  K  A AW A
Sbjct: 545 -DTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGK-DAVAWTA 602

Query: 264 LLN 266
           +++
Sbjct: 603 MVS 605



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 112/261 (42%), Gaps = 47/261 (18%)

Query: 2    YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
            YA+ GC+   +++F+ + E D+V   A+IS  A  G   +A+++FD              
Sbjct: 879  YAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFD-------------- 924

Query: 62   AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-L 120
                             +M  + +K N+++ V++LS C   G + QG      +  +  +
Sbjct: 925  -----------------MMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGI 967

Query: 121  KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLEL-- 177
            + ++   T +V +  + G +N A++F   +    +   W +++    ++    K++EL  
Sbjct: 968  EPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVH----KNVELGR 1023

Query: 178  FSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSM-----RREYGIEPWLEHYGC 231
            FS  K   + P +E T+V +       G +++      SM     R+E G+  W+E  G 
Sbjct: 1024 FSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLS-WVEIKG- 1081

Query: 232  LVDLYGRAGRLDEALDVINKM 252
             V  +         + VIN M
Sbjct: 1082 EVHAFSVGSEDHPCMRVINAM 1102


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/442 (42%), Positives = 270/442 (61%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+   + ++    KCGD+  A  +F+ +   D +AW +M++G    G   +AL ++H 
Sbjct: 62  DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 121

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V  +E +  +++ A + + AL+QGR  H  + +        +GT+LVDMY+KCGN
Sbjct: 122 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 181

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M  RN+  W +++ GLA +G  E+++ LF  MK  G+ P+ V+F+ +L  
Sbjct: 182 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 241

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL  E  E+  SM  +YGIEP +EHY CLVD  GRAG + EA  VI  MP K  A 
Sbjct: 242 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 301

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
              ALL ACR+  + E G+  + +L  LE  +  AYVLLSNIYA +  WD V + R++MK
Sbjct: 302 INRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 361

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            K VKK PG S I+V   +H F   D +HP+ + I   + E+ + ++  GYV +T  V+ 
Sbjct: 362 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 421

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+EEKE +L  HSEK+AIA+GLIS      IR++KNLRVC DCH+  K ISKVF REI
Sbjct: 422 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 481

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RD NRFHHF++G CSC  YW
Sbjct: 482 VLRDANRFHHFRDGVCSCGDYW 503



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 115/217 (52%), Gaps = 4/217 (1%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY      ++AL LF L+     K +++++ +   AC  L  LDQG+  H +  +  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               + + + ++DMY KCG+M  A   F  +   +   WTS+I G   NG  +++L ++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M+Q+ V P+E TF ++++    V  +E+GR+ H + ++ +   +P++     LVD+Y +
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAK 178

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            G +++A  +  KM ++ +   W A+L     + N E
Sbjct: 179 CGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 214


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/462 (40%), Positives = 288/462 (62%), Gaps = 12/462 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G L   + VF  + E D+V  T+MI+A ++ G++  AR+ FD M  R+ I WNAM
Sbjct: 415 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAM 474

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L  Y Q G   + L ++  ++   DV  + V+ V++   C  +GA   G     +  +  
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 534

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L + V++  A + MYSKCG +++A   F  +  ++V +W ++I G + +G G+++ + F 
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G +P+ +++V+VL GC   GLV+EG+ +FD M R +GI P LEH+ C+VDL GRA
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 654

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I+KMPMKP A  WGALL+AC+++ N E+ ELA++ + EL++ + G+Y+LL+
Sbjct: 655 GHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLA 714

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IY+++   D    VR++M+ KG+KK PG S +EV+ +VH F A D +HP+   I   + 
Sbjct: 715 KIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMD 774

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++   GYV   +P            +   HSEK+A+AFG++SL   +PI I+KNLR
Sbjct: 775 ELMEKIAHLGYVRTESP-----------RSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLR 823

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+IS V +RE ++RD  RFHHFK G CSC  YW
Sbjct: 824 ICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 141/273 (51%), Gaps = 2/273 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+   G + +  ++F  I  P + C+ +M++  AK   +D A + F++M ERD ++WN M
Sbjct: 182 MFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMM 241

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +A  +Q G+ REAL L   M    V+L+  +  S L+AC  L +L  G+  H  + R+  
Sbjct: 242 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 301

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           ++   + +AL+++Y+KCG+  +A   F  +++RN  +WT +IGG        KS+ELF+ 
Sbjct: 302 QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 361

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+   +  ++    +++ GC     +  GR+   S+  + G    +     L+ LY + G
Sbjct: 362 MRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCG 420

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            L  A  V + M  +    +W +++ A     N
Sbjct: 421 DLQNAEFVFSSMSERDIV-SWTSMITAYSQIGN 452



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 152/324 (46%), Gaps = 41/324 (12%)

Query: 3   AELGCLGYCQ----KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A L  LG+ +    KV   + + D    +A+I   AKCG    A+++F+ + +R+ ++W 
Sbjct: 281 ARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWT 340

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
            ++ G  Q     +++ LF+ M+   + +++ ++ +++S C +   L  GR  H    ++
Sbjct: 341 VLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS 400

Query: 119 RLKMTVTLGTALVDMYSKC-------------------------------GNMNKAMDFF 147
                + +  +L+ +Y+KC                               GN+ KA +FF
Sbjct: 401 GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFF 460

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLV 206
            GM  RN  TW +++G    +GA E  L+++S ++ Q  V P+ VT+V++ RGC  +G  
Sbjct: 461 DGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGAN 520

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           + G +      +  G+   +      + +Y + GR+ EA  + + +  K    +W A++ 
Sbjct: 521 KLGDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVV-SWNAMIT 578

Query: 267 ACRMYKNTEMGELASRKLVELETK 290
               Y    MG+ A++   ++ +K
Sbjct: 579 G---YSQHGMGKQAAKTFDDMLSK 599



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 37/305 (12%)

Query: 2   YAELGCLGYCQKVFDG-IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           Y   G L   +++    I EP+V+    M++  AK G +  A ++FD MP RD  +WN +
Sbjct: 49  YLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTL 108

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY Q  +  + L  F  M +  D   N  +   V+ +C  LG  +          +  
Sbjct: 109 MSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFD 168

Query: 120 LKMTVTLGTALVDMYSKCG-------------------------------NMNKAMDFFW 148
                 + TALVDM+ +CG                                ++ A+++F 
Sbjct: 169 FWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFE 228

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M ER+V +W  +I  L+ +G   ++L L   M + GVR +  T+ S L  C  +  +  
Sbjct: 229 DMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW 288

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G++ H   +R    I+P++     L++LY + G   EA  V N +  + ++ +W  L+  
Sbjct: 289 GKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSLQDR-NSVSWTVLIGG 345

Query: 268 CRMYK 272
              Y+
Sbjct: 346 SLQYE 350



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 5/151 (3%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG- 149
           ++   L +C   GAL   R  H  +    L   V L   L+  Y  CG ++ A       
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           +KE NV T   ++ G A  G+   + ELF  M     R +  ++ +++ G        +G
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP----RRDVASWNTLMSGYFQARRFLDG 121

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
            E F SM R     P    + C++   G  G
Sbjct: 122 LETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/465 (41%), Positives = 280/465 (60%), Gaps = 5/465 (1%)

Query: 2   YAELGCLGYCQKVFDGIHE----PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           Y + G    C K+F  +      PD V  + ++SA  +CG +D A K F E+ E+D + W
Sbjct: 231 YLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCW 290

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
             M+ G AQ GK  +AL LF  M + +V+ +  ++ SV+S+C  L +L QG+  H     
Sbjct: 291 TTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVI 350

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
             +   + + +ALVDMYSKCG    A   F  M  RNV +W S+I G A NG   ++L L
Sbjct: 351 FGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALAL 410

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           +  M    ++P+ +TFV VL  C   GLVE G+ +F S+ + +G+ P  +HY C+++L G
Sbjct: 411 YEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLG 470

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG +D+A+D+I  M  +P+   W  LL+ CR+  +   GE+A+R L EL+  N G Y++
Sbjct: 471 RAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIM 530

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           LSNIYA    W  V  VR +MK   +KK    S IE+D +VH+F A D TH    +I   
Sbjct: 531 LSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEE 590

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEG-VPIRIVK 416
           L  + ++L+ +G+  +TN V++D+ EEEK D++C HSEK+A+AF LI    G  PIRI+K
Sbjct: 591 LNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMK 650

Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           N+RVC DCH   K +SK+  R II+RD NRFHHF EG+CSCK  W
Sbjct: 651 NIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 144/271 (53%), Gaps = 8/271 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +YA+ G L   + +FD +   DV    AM+SA +K G+V+  R +FD+M   D +++N +
Sbjct: 67  LYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTV 126

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AG++  G S +AL  F  MQ    +  + + VSVL AC+ L  + +G+  H  I    L
Sbjct: 127 IAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSL 186

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
             +V +  AL +MY+KCG +++A   F  M  +NV +W S+I G   NG  E   +LF  
Sbjct: 187 GESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCE 246

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+ +G+ P++VT  ++L      G ++E  + F  ++ +  +       GC      + G
Sbjct: 247 MQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGC-----AQNG 301

Query: 241 RLDEALDVINKMPM---KPHAGAWGALLNAC 268
           + ++AL +  +M +   +P      +++++C
Sbjct: 302 KEEDALLLFREMLLENVRPDNFTISSVVSSC 332


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/454 (39%), Positives = 279/454 (61%), Gaps = 1/454 (0%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G   +V      PD V    ++    +C   +   K+FD+MPER+  +WN++++G+ +  
Sbjct: 51  GVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKED 110

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           K  EAL +F  MQ   +  + V++ ++L  C  + AL  G+  H  I ++  +  V +  
Sbjct: 111 KLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLN 170

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           +LVDMY KCG ++     F GM+ +++ +W +++ G A+NG    +++LF+ M   G+RP
Sbjct: 171 SLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRP 230

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           ++VTF+++L GC   GL E+G++ F  M  ++G+ P LEHY CLVD+ GRAGR+D AL V
Sbjct: 231 DDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVV 290

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           +  MPMK     WG+LLN+CR++    + E  + +L ELE  N G YV+LSNIYA +  W
Sbjct: 291 VKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMW 350

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPR-YNEIEVMLGEISRRLKL 367
           D V  VR++M+ + ++K  GCS I+V  ++H F AG     R  +E + +  ++   ++ 
Sbjct: 351 DSVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAMEE 410

Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDV 427
            GY+ NT+ V++D+ EE K   +C HSE++A  F LI    G+PIRI KNLRVC DCH  
Sbjct: 411 FGYIPNTDVVLHDVNEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSW 470

Query: 428 TKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            K++S+V  R I++RD NRFHHFKEG CSC  YW
Sbjct: 471 IKIVSRVTGRVIVLRDTNRFHHFKEGACSCNDYW 504



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 43/257 (16%)

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M  GY++ G  REAL ++  M  + ++    +  + L AC  L  L  GR  H  + ++ 
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSS 60

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
                 +   L+ +Y++C   N+ +  F  M ERNV +W S+I G        ++L++F 
Sbjct: 61  EGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFR 120

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVV-----------------------------------G 204
            M++ G+  + VT  ++L  C  V                                   G
Sbjct: 121 RMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCG 180

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAW 261
           +V+ GR  FD MR +      L  +  ++  Y   G +  A+D+ N+M    ++P    +
Sbjct: 181 VVDYGRRLFDGMRSKD-----LTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTF 235

Query: 262 GALLNACRMYKNTEMGE 278
            ALL+ C     TE G+
Sbjct: 236 IALLSGCSHAGLTEDGQ 252



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE----RDPIA 56
           MY + G + Y +++FDG+   D+     M++  A  G + +A  +F+EM       D + 
Sbjct: 175 MYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVT 234

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQI 82
           + A+L+G +  G + +   LFH M++
Sbjct: 235 FIALLSGCSHAGLTEDGQKLFHRMEM 260


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 274/435 (62%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++   AKCG +  A ++F+ M ++  + W++M+AGY Q     EAL L+   Q   ++
Sbjct: 201 TALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLE 260

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N+ ++ SV+ AC++L AL +G+  H  I ++     V + ++ VDMY+KCG++ ++   
Sbjct: 261 QNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYII 320

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  ++E+N+  W ++I G A +   ++ + LF  M+Q G+ PNEVTF S+L  C   GLV
Sbjct: 321 FSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLV 380

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEGR  F  MR  YG+ P + HY C+VD+ GRAG L EA ++I  +P  P A  WG+LL 
Sbjct: 381 EEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLA 440

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           +CR+YKN E+ E+A+ KL ELE +N G +VLLSNIYA +K W+ +   R++++   VKK+
Sbjct: 441 SCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKV 500

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            G S I++  +VH F  G+  HPR  EI   L  +  + +  GY  +    ++D+E  +K
Sbjct: 501 RGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKK 560

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E+ L +HSEK+A+ FGL+ L E  P+RI+KNLR+C DCH+  K  S    R IIVRD NR
Sbjct: 561 EELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNR 620

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF +G CSC  +W
Sbjct: 621 FHHFSDGHCSCGDFW 635



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 131/238 (55%), Gaps = 5/238 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     +I+A +KCG V+LAR++FD M ER  ++WN M+  Y +     EAL +F  
Sbjct: 93  EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152

Query: 80  MQIHDVKLNEVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M+    K +E ++ SVLSAC  +  AL+  +  H    +  + + + +GTAL+D+Y+KCG
Sbjct: 153 MRNEGFKFSEFTISSVLSACGVNCDALECKKL-HCLSVKTCIDLNLYVGTALLDLYAKCG 211

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A+  F  M++++  TW+S++ G   N   E++L L+   ++  +  N+ T  SV+ 
Sbjct: 212 MIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC 271

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            C  +  + EG++ H    +  +G   ++      VD+Y + G L E+  + +++  K
Sbjct: 272 ACSNLAALIEGKQMHAVICKSGFGSNVFVASSA--VDMYAKCGSLRESYIIFSEVQEK 327



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C   GA+ + +  H  I R  L+  VTL   L++ YSKCG +  A   F GM ER+
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV-VGLVEEGREHF 213
           + +W ++IG    N    ++L++F  M+  G + +E T  SVL  C V    +E  + H 
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            S++    +  ++     L+DLY + G + +A+ V   M  K     W +++      KN
Sbjct: 187 LSVKTCIDLNLYVG--TALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSMVAGYVQNKN 243

Query: 274 TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
            E   L  R+   +  + +     LS++     N   +I  +Q+
Sbjct: 244 YEEALLLYRRAQRMSLEQN--QFTLSSVICACSNLAALIEGKQM 285



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   ++ +   AKCG +  +  +F E+ E++   WN +++G+A+  + +E + LF  MQ
Sbjct: 297 NVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQ 356

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCGNM 140
              +  NEV+  S+LS C H G +++GR     +     L   V   + +VD+  + G +
Sbjct: 357 QDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLL 416

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           ++A +    +K        S+ G L  +    K+LEL
Sbjct: 417 SEAYEL---IKSIPFDPTASIWGSLLASCRVYKNLEL 450


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/467 (41%), Positives = 284/467 (60%), Gaps = 9/467 (1%)

Query: 1   MYAELGCLGYCQKVFDG--IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           MYA+ G +   + V     + + +V+  TA++    K GD+  AR+MFD M  RD +AW 
Sbjct: 339 MYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWT 398

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GY Q G + EA+ LF LM     + N  ++ +VLS C  L  L+ G+  H    R+
Sbjct: 399 AMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRS 458

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFF----WGMKERNVYTWTSVIGGLAMNGAGEKS 174
             + + ++  ++V MY++ G++  A   F    W    +   TWTS+I  LA +G GE +
Sbjct: 459 LQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHW---RKETVTWTSMIVALAQHGLGEDA 515

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           + LF  M + GV+P+ +TFV VL  C  VG V+EG+ +F  ++ ++GI P + HY C+VD
Sbjct: 516 VGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVD 575

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           L  RAG   EA + I +MP++P A AWG+LL+ACR++KN ++ ELA+ KL+ ++  N GA
Sbjct: 576 LLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGA 635

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEI 354
           Y  LSN+Y+    W+    + +  K K VKK  G S   +   VH F A D  HP+ + +
Sbjct: 636 YSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTV 695

Query: 355 EVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
                ++   +K AG+V +   V++D+++E KE+ L +HSEK+AIAFGL+S  E   +RI
Sbjct: 696 YRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRI 755

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +KNLRVC DCH   K ISKV +REII+RD  RFHHFK+G CSCK YW
Sbjct: 756 MKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 146/302 (48%), Gaps = 37/302 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     + VF+ + E  V    AM+S  A  G +DLA  +F+ MP+R  ++WNA+
Sbjct: 206 MYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAV 265

Query: 61  LAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY Q G + +AL  F  ++    +  +E ++ SVLSAC +LG +  G+  H YI R+R
Sbjct: 266 IAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR 325

Query: 120 LKMTVTLGTALVDMYSKC---------------------------------GNMNKAMDF 146
           +     +  AL+ MY+K                                  G+M  A + 
Sbjct: 326 MPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREM 385

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  R+V  WT++I G   NG  ++++ELF LM ++G  PN  T  +VL  C  +  +
Sbjct: 386 FDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACL 445

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           E G++ H  ++R     E        +V +Y R+G L  A  V +++  +     W +++
Sbjct: 446 EYGKQIHCKAIRSLQ--EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMI 503

Query: 266 NA 267
            A
Sbjct: 504 VA 505



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 135/280 (48%), Gaps = 39/280 (13%)

Query: 11  CQKVFDGI--HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
            +++FD I   + +V    +++S  AK G +  AR +F EMPERDP++W  M+ G  + G
Sbjct: 82  ARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVG 141

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           +  EA+ +F  M    +   + ++ +VLS+C    A   GR  H ++ +  L   V +  
Sbjct: 142 RFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVAN 201

Query: 129 ALVDMYSKCGN-------------------------------MNKAMDFFWGMKERNVYT 157
           ++++MY KCG+                               M+ A+  F  M +R + +
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVS 261

Query: 158 WTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDS 215
           W +VI G   NG   K+L  FS ++  + + P+E T  SVL  C  +G+V  G++ H   
Sbjct: 262 WNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYI 321

Query: 216 MRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +R      P++ +    L+ +Y ++G ++ A  V+ +  M
Sbjct: 322 LRSRM---PYIGQVTNALISMYAKSGSVENARGVMQQAVM 358


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/442 (42%), Positives = 270/442 (61%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            + D+   + ++    KCGD+  A  +F+ +   D +AW +M++G    G   +AL ++H 
Sbjct: 1139 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 1198

Query: 80   MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            M+   V  +E +  +++ A + + AL+QGR  H  + +        +GT+LVDMY+KCGN
Sbjct: 1199 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 1258

Query: 140  MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            +  A   F  M  RN+  W +++ GLA +G  E+++ LF  MK  G+ P+ V+F+ +L  
Sbjct: 1259 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 1318

Query: 200  CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
            C   GL  E  E+  SM  +YGIEP +EHY CLVD  GRAG + EA  VI  MP K  A 
Sbjct: 1319 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 1378

Query: 260  AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
               ALL ACR+  + E G+  + +L  LE  +  AYVLLSNIYA +  WD V + R++MK
Sbjct: 1379 INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 1438

Query: 320  AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             K VKK PG S I+V   +H F   D +HP+ + I   + E+ + ++  GYV +T  V+ 
Sbjct: 1439 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 1498

Query: 380  DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            D+E+EEKE +L  HSEK+AIA+GLIS      IR++KNLRVC DCH+  K ISKVF REI
Sbjct: 1499 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 1558

Query: 440  IVRDRNRFHHFKEGKCSCKGYW 461
            ++RD NRFHHF++G CSC  YW
Sbjct: 1559 VLRDANRFHHFRDGVCSCGDYW 1580



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
            D    T +I   +K G ++ A  +F    + D   WNAM+ GY      ++AL LF L+ 
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIH 1099

Query: 82   IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
                K +++++ +   AC  L  LDQG+  H +  +      + + + ++DMY KCG+M 
Sbjct: 1100 KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 1159

Query: 142  KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
             A   F  +   +   WTS+I G   NG  +++L ++  M+Q+ V P+E TF ++++   
Sbjct: 1160 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 202  VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             V  +E+GR+ H + ++ +   +P++     LVD+Y + G +++A  +  KM ++ +   
Sbjct: 1220 CVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIAL 1276

Query: 261  WGALLNACRMYKNTE 275
            W A+L     + N E
Sbjct: 1277 WNAMLVGLAQHGNAE 1291



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 6/194 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-----GKSREALHL 76
           D      +++  +KCG +  AR++FD  PERD + WNA+L  YA       G ++E LHL
Sbjct: 655 DHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHL 714

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F L++        +++  VL  C + G L      H Y  +  L+  V +  ALV++YSK
Sbjct: 715 FRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 774

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG M  A   F  M+ER+V  W  ++ G    G  +++ +LFS   ++G+RP+E +   +
Sbjct: 775 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 834

Query: 197 LRGCCVVGLVEEGR 210
           L G   V   +EG+
Sbjct: 835 LNGVSEVNW-DEGK 847



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 135/251 (53%), Gaps = 5/251 (1%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            + DV    ++++  +K G    AR++F++M   D I+WN+M++  AQ     E+++LF  
Sbjct: 936  DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFID 995

Query: 80   MQIHDVKLNEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            +    +K +  ++ SVL AC+ L   L+  R  HV+  +        + T L+D+YSK G
Sbjct: 996  LLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSG 1055

Query: 139  NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
             M +A   F    + ++  W +++ G  +   G+K+LELFSL+ ++G + +++T  +  +
Sbjct: 1056 KMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAK 1115

Query: 199  GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C  + L+++G++ H  +++   G +  L     ++D+Y + G +  A  V N +   P 
Sbjct: 1116 ACGCLVLLDQGKQIHAHAIKA--GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS-APD 1172

Query: 258  AGAWGALLNAC 268
              AW ++++ C
Sbjct: 1173 DVAWTSMISGC 1183



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 44   KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103
             + D+ P  D   WN  L+     G +  A+  F  M   ++  + V+++ VL+A     
Sbjct: 861  SLSDDNP--DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTD 918

Query: 104  ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163
             L+ G+  H    ++ L   V++  +LV+MYSK G    A + F  MK  ++ +W S+I 
Sbjct: 919  DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 164  GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC--VVGLVEEGREHFDSMRREYG 221
              A +   E+S+ LF  +   G++P+  T  SVLR C   + GL    + H  +++    
Sbjct: 979  SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNI 1038

Query: 222  IEPWLEHYGCLVDLYGRAGRLDEA 245
             + ++     L+D+Y ++G+++EA
Sbjct: 1039 ADSFVA--TTLIDVYSKSGKMEEA 1060



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 117/268 (43%), Gaps = 30/268 (11%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++A  G  GY  K+  G+ E DV    A+++  +KCG +  AR +FD M ERD + WN M
Sbjct: 743 LWAAEGVHGYAIKI--GL-EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMM 799

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L GY Q G  +EA  LF       ++ +E S+  +L+  + +   D+G+W    ++    
Sbjct: 800 LKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVN-WDEGKWLADQVQAYAA 858

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K++++                            +V+ W   +      G    ++E F  
Sbjct: 859 KLSLSDDNP------------------------DVFCWNKKLSECLWAGDNWGAIECFVN 894

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M    +  + VT + VL        +E G++    +  + G++  +     LV++Y + G
Sbjct: 895 MNGLNIDYDAVTLLVVLAAVAGTDDLELGKQ-VHGIAVKSGLDSDVSVANSLVNMYSKMG 953

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNAC 268
               A +V N M       +W +++++C
Sbjct: 954 CAYFAREVFNDMKHLDLI-SWNSMISSC 980



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  CTH   +  G     ++  N           L+ MYSKCG+++ A   F    ER+
Sbjct: 638 LLGKCTHARIVVSGSAGDHFLSNN-----------LLTMYSKCGSLSSARQVFDTTPERD 686

Query: 155 VYTWTSVIGGLAM-----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           + TW +++G  A      +G  ++ L LF L++ +      +T   VL+ C   G +   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            E       + G+E  +   G LV++Y + GR+ +A
Sbjct: 747 -EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDA 781


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/440 (42%), Positives = 280/440 (63%), Gaps = 4/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T+++S  AK G +D+A ++F  MP R+ + W+A+++G+AQ G++ EAL LF  +Q
Sbjct: 242 DVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQ 301

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++    ++VS L AC  +G L  G+  H +I R RL+    LGTA++DMYSKCG++ 
Sbjct: 302 ADGLQPCSWALVSALLACASVGFLKLGKSIHGFILR-RLEWQCILGTAVLDMYSKCGSLE 360

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  R++  W ++I     +G G  +L LF  + + G++P+  TF S+L    
Sbjct: 361 SARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS 420

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG+  FD M +E+GIEP  +HY C+VDL  R+G ++EA D++  M  +P    W
Sbjct: 421 HSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIW 480

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL+ C   K  E+GE  ++K++EL  ++ G   L+SN+YA +K WD+V  +R++MK  
Sbjct: 481 VILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDS 540

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G KK+PG S+IEV    H F   D++HP++ EI  M+ +++  ++  GYV  T  V +D+
Sbjct: 541 GSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDL 600

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +E++    L  HSE++AIAFGL++   G  + I+KNLRVC DCHD  K ISK+ +REI+V
Sbjct: 601 DEDQ---LLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVV 657

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC  YW
Sbjct: 658 RDAKRFHHFKDGACSCGDYW 677



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 176/366 (48%), Gaps = 27/366 (7%)

Query: 3   AELGCLGYCQKV----FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A LG L   + V    F   +  DV   +A++   ++CG ++ A ++FD MP +D +AW+
Sbjct: 118 ARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWS 177

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
            M+AG+   G+  EAL ++  M+ H V  +EV MV V+ AC   G    G   H  + R+
Sbjct: 178 TMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRH 237

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            ++M V   T+LV MY+K G+++ A   F  M  RN  TW+++I G A NG   ++L+LF
Sbjct: 238 CMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLF 297

Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLV-DLY 236
             ++  G++P     VS L  C  VG ++ G+  H   +RR      W    G  V D+Y
Sbjct: 298 RELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR----LEWQCILGTAVLDMY 353

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAY 295
            + G L+ A  + NK+  +     W A++  C  +          ++L E   K +H  +
Sbjct: 354 SKCGSLESARKLFNKLSSRDLV-LWNAIIACCGTHGCGHDALALFQELNETGIKPDHATF 412

Query: 296 VLL------SNIYAESKNW-DRVINVRQIMKAKG-----VKKLPGCSVIEVDREVHEFFA 343
             L      S +  E K W DR+I    I  A+      V  L    ++E   E ++  A
Sbjct: 413 ASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVE---EANDMLA 469

Query: 344 GDETHP 349
             +T P
Sbjct: 470 SMQTEP 475



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSM 216
           W  ++   +  GA   +L +F  +  +  RPN  TF   L  C  +G ++        + 
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSA-RPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              YG + ++     L+ LY R G ++EA+ V + MP K    AW  ++
Sbjct: 135 AAGYGHDVFV--CSALLHLYSRCGAMEEAIRVFDGMPRKDRV-AWSTMV 180


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/447 (43%), Positives = 279/447 (62%), Gaps = 13/447 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T ++ + AKCGD+  ARK+FDEM  RD   WN++LAG AQ  +   AL LFH + 
Sbjct: 145 DVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLA 204

Query: 82  IHDVKL------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
               +L      NEV++V+ LSAC  +G L  G + H + +R  L   V +  +L+DMYS
Sbjct: 205 NSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYS 264

Query: 136 KCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           KCG++++A+D F  +K  ++ + ++ + I   +M+G G  +L LF  M    + P+ VT+
Sbjct: 265 KCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTY 323

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++VL GC   GLV++G   F+SMR    + P ++HYG +VDL GRAGRL EA D +  MP
Sbjct: 324 LAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMP 379

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
                  W  LL A +M+   E+ ELA+ KL EL +   G YVLLSN+YA    W  V  
Sbjct: 380 FPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGR 439

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR  M++  V+K+PG S  E+D  +H+F  GD+ HPR+ EI   L +I  R+   GY   
Sbjct: 440 VRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPE 499

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           T+ V++DI EEEK+  LC HSEK+AIAFGLI+   G  +R++KNLR+C DCH V K+ISK
Sbjct: 500 TSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISK 559

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGY 460
            + R I++RDR RFH F++G+CSC+ Y
Sbjct: 560 AYGRVIVIRDRARFHRFEDGQCSCRDY 586



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R  +   V L T L+D Y+KCG++  A   F  M  R+V TW S++ GLA     
Sbjct: 134 HALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEP 193

Query: 172 EKSLELFSLMKQAGV------RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
             +L LF  +  +         PNEVT V+ L  C  +GL+++G  +     + +G++  
Sbjct: 194 NLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGM-YVHEFAKRFGLDRN 252

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
           +     L+D+Y + G L  ALDV + + P      ++ A + A  M+ +   G  A R  
Sbjct: 253 VRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGH---GGDALRLF 309

Query: 285 VELETK 290
            E+ T+
Sbjct: 310 DEMPTR 315


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/430 (42%), Positives = 273/430 (63%), Gaps = 7/430 (1%)

Query: 39  VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-------NEVS 91
           +D A  +F+++P      WN M+ G+A  G+   +L L+  M    +K        N VS
Sbjct: 527 IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVS 586

Query: 92  MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
           ++SVL AC +LGAL +G W H Y+ +   +  + + TA++DMYSKCG+++ A   F    
Sbjct: 587 ILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETA 646

Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
            +++  W+++I    ++G G K+++LF  M +AGVRP+ VTF  VL  C   GL+EEG+ 
Sbjct: 647 GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKM 706

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           +F  M  E+ I   L +Y C+VDL GRAG+L EA+D+I  MP++P A  WG+LL ACR++
Sbjct: 707 YFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIH 766

Query: 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSV 331
            N ++ E  +  L  L+  + G +VLLSNIYA    W+ V  VR++M  +G  K+ G S+
Sbjct: 767 NNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSL 826

Query: 332 IEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLC 391
           +E D +VH+F  GD +HP++ ++   L E++  +K  GYV  T+ V++DIEEE KE  L 
Sbjct: 827 VEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALS 886

Query: 392 KHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451
            HSE++AIAFGLI+   G  +RI KNLR+C DCH+  K+ISK+ NR I+VRD +RFH F+
Sbjct: 887 YHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFE 946

Query: 452 EGKCSCKGYW 461
           +G CSC  YW
Sbjct: 947 DGVCSCGDYW 956



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 96/164 (58%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           EP+ V   + + ACA   +++  +K+      +D ++W A+L+GYAQ G + +++ +F  
Sbjct: 269 EPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRN 328

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    ++ + V++V +L+A + LG   Q    H Y+ R+     V +G +L+++YSKCG+
Sbjct: 329 MLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGS 388

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           +  A+  F GM  R+V  W+S+I    ++G G ++LE+F  M Q
Sbjct: 389 LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQ 432



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 144/308 (46%), Gaps = 12/308 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    T + S  AKC  +  ARK+FDE P  +   WN+ L  Y +  +  E L LFHLM 
Sbjct: 35  DTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMI 94

Query: 82  IHDVKLNEVSMVSV-LSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGN 139
               +  +   + + L AC  L  L+ G+  H + ++N  +   + +G+ALV++YSKCG 
Sbjct: 95  CTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQ 154

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M +A+  F   +  +   WTS++ G   N   E++L LFS M        ++  V+ L  
Sbjct: 155 MGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLN 214

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK---P 256
                  E+   +  S   E  +  W     C    Y      +EAL++ ++M  K   P
Sbjct: 215 LYAKTGCEKIAANLFSKMPEKDVISWSTMIAC----YANNEAANEALNLFHEMIEKRFEP 270

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
           ++    + L AC + +N E G+   +  V    K+  ++V L + YA++    + + V +
Sbjct: 271 NSVTVVSALQACAVSRNLEEGKKIHKIAV---WKDVVSWVALLSGYAQNGMAYKSMGVFR 327

Query: 317 IMKAKGVK 324
            M + G++
Sbjct: 328 NMLSDGIQ 335



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 2/147 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D++  TA++   +KCG +DLAR +FDE   +D + W+AM+A Y   G  R+A+ LF  
Sbjct: 616 EFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQ 675

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M    V+ + V+   VLSAC+H G L++G+ +  +  E   +   ++    +VD+  + G
Sbjct: 676 MVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAG 735

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGG 164
            +++A+D    M  E +   W S++G 
Sbjct: 736 QLSEAVDLIENMPVEPDASIWGSLLGA 762



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 75/304 (24%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAK------------------CGDVDL- 41
           +Y++ G +G   KVF+    PD V  T+M++   +                  C D DL 
Sbjct: 148 LYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLP 207

Query: 42  -----------------ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
                            A  +F +MPE+D I+W+ M+A YA    + EAL+LFH M    
Sbjct: 208 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 267

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
            + N V++VS L AC     L++G+  H        K+ V                    
Sbjct: 268 FEPNSVTVVSALQACAVSRNLEEGKKIH--------KIAV-------------------- 299

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
              W    ++V +W +++ G A NG   KS+ +F  M   G++P+ V  V +L     +G
Sbjct: 300 ---W----KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELG 352

Query: 205 LVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           + ++    H   +R  +    ++     L++LY + G L +A+ +   M ++     W +
Sbjct: 353 IFQQALCLHGYVVRSGFNSNVFVG--ASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSS 409

Query: 264 LLNA 267
           ++ A
Sbjct: 410 MIAA 413



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 45/268 (16%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLM 80
           +V    ++I   +KCG +  A K+F  M  RD + W++M+A Y   G+  EAL +F  ++
Sbjct: 372 NVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMI 431

Query: 81  QI-------HDVKLN-EVSMVSVLSACTHLGALD----------QGRW-AHVY------- 114
           Q+       + + +  +V     +++CT    +             RW  H +       
Sbjct: 432 QVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYP 491

Query: 115 ----------IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
                     I    L+    + T    MY     ++ A   F  +     + W  +I G
Sbjct: 492 FQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRG 551

Query: 165 LAMNGAGEKSLELFSLMKQ-------AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
            A +G    SLEL+S M +       +GV PN V+ +SVL  C  +G + +G E F S  
Sbjct: 552 FATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYV 610

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            + G E  +     ++D+Y + G LD A
Sbjct: 611 IQTGFEFDILVATAIMDMYSKCGSLDLA 638


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/442 (42%), Positives = 270/442 (61%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+   + ++    KCGD+  A  +F+ +   D +AW +M++G    G   +AL ++H 
Sbjct: 424 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 483

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V  +E +  +++ A + + AL+QGR  H  + +        +GT+LVDMY+KCGN
Sbjct: 484 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 543

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M  RN+  W +++ GLA +G  E+++ LF  MK  G+ P+ V+F+ +L  
Sbjct: 544 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 603

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL  E  E+  SM  +YGIEP +EHY CLVD  GRAG + EA  VI  MP K  A 
Sbjct: 604 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 663

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
              ALL ACR+  + E G+  + +L  LE  +  AYVLLSNIYA +  WD V + R++MK
Sbjct: 664 INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 723

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            K VKK PG S I+V   +H F   D +HP+ + I   + E+ + ++  GYV +T  V+ 
Sbjct: 724 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 783

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+E+EEKE +L  HSEK+AIA+GLIS      IR++KNLRVC DCH+  K ISKVF REI
Sbjct: 784 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 843

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           ++RD NRFHHF++G CSC  YW
Sbjct: 844 VLRDANRFHHFRDGVCSCGDYW 865



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC-----GKSREALHLFHLMQIH 83
           +++  +KCG +  AR++FD  PERD + WNA+L  YA       G ++E LHLF L++  
Sbjct: 118 LLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRAS 177

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
                 +++  VL  C + G L      H Y  +  L+  V +  ALV++YSKCG M  A
Sbjct: 178 LGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDA 237

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M+ER+V  W  ++ G    G  +++ +LFS   ++G+RP+E +   +L GC   
Sbjct: 238 RLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWA 297

Query: 204 GL--VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           G   +E G++    +  + G++  +     LV++Y + G    A +V N M       +W
Sbjct: 298 GTDDLELGKQ-VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISW 355

Query: 262 GALLNAC 268
            +++++C
Sbjct: 356 NSMISSC 362



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 140/263 (53%), Gaps = 11/263 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV    ++++  +K G    AR++F++M   D I+WN+M++  AQ     E+++LF +
Sbjct: 318 DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLF-I 376

Query: 80  MQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             +H+        L  +++ +   AC  L  LDQG+  H +  +      + + + ++DM
Sbjct: 377 DLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDM 436

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y KCG+M  A   F  +   +   WTS+I G   NG  +++L ++  M+Q+ V P+E TF
Sbjct: 437 YIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTF 496

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            ++++    V  +E+GR+ H + ++ +   +P++     LVD+Y + G +++A  +  KM
Sbjct: 497 ATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKM 554

Query: 253 PMKPHAGAWGALLNACRMYKNTE 275
            ++ +   W A+L     + N E
Sbjct: 555 NVR-NIALWNAMLVGLAQHGNAE 576



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 142/276 (51%), Gaps = 14/276 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++A  G  GY  K+  G+ E DV    A+++  +KCG +  AR +FD M ERD + WN M
Sbjct: 199 LWAAEGVHGYAIKI--GL-EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMM 255

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA--LDQGRWAHVYIERN 118
           L GY Q G  +EA  LF       ++ +E S+  +L+ C   G   L+ G+  H    ++
Sbjct: 256 LKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKS 315

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
            L   V++  +LV+MYSK G    A + F  MK  ++ +W S+I   A +   E+S+ LF
Sbjct: 316 GLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLF 375

Query: 179 SLMKQAGVRPNEVTFVSVL-----RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCL 232
             +   G++P+  T  S+      + C  + L+++G++ H  +++   G +  L     +
Sbjct: 376 IDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA--GFDSDLHVNSGI 433

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           +D+Y + G +  A  V N +   P   AW ++++ C
Sbjct: 434 LDMYIKCGDMVNAGIVFNYIS-APDDVAWTSMISGC 468



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  CTH   +  G     ++  N           L+ MYSKCG+++ A   F    ER+
Sbjct: 94  LLGKCTHARIVVSGSAGDHFLSNN-----------LLTMYSKCGSLSSARQVFDTTPERD 142

Query: 155 VYTWTSVIGGLAM-----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           + TW +++G  A      +G  ++ L LF L++ +      +T   VL+ C   G +   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            E       + G+E  +   G LV++Y + GR+ +A
Sbjct: 203 -EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDA 237


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/466 (40%), Positives = 283/466 (60%), Gaps = 9/466 (1%)

Query: 2   YAELGCLGYCQKVFDG--IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
           YA+ G +   +++ D   + + +V+  TA++    K GD   AR++FD M  RD IAW A
Sbjct: 341 YAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTA 400

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           M+ GY Q G++ EA+ LF  M     + N  ++ +VLSAC  L  L  G+  H    R+ 
Sbjct: 401 MIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSL 460

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFF----WGMKERNVYTWTSVIGGLAMNGAGEKSL 175
            + +V++  A++ +Y++ G++  A   F    W    +   TWTS+I  LA +G GE+++
Sbjct: 461 QEQSVSVSNAIITVYARSGSVPLARRVFDQICW---RKETVTWTSMIVALAQHGLGEQAI 517

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LF  M + GV+P+ VT++ V   C   G +++G+ +++ M  E+GI P + HY C+VDL
Sbjct: 518 VLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDL 577

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
             RAG L EA + I +MP+ P    WG+LL ACR+ KN ++ ELA+ KL+ ++  N GAY
Sbjct: 578 LARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAY 637

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
             L+N+Y+    W+    + ++ K K VKK  G S   V  +VH F A D  HP+ + I 
Sbjct: 638 SALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAIC 697

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
               E+   +K AG+V + N V++D+++E KE+ L +HSEK+AIAFGLIS  E   +RI+
Sbjct: 698 KKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIM 757

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH   K ISKV +REIIVRD  RFHHF++G CSCK YW
Sbjct: 758 KNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 37/302 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     + VF+ +         AM+S     G +DLA  MF+ M ER  ++WNA+
Sbjct: 207 MYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAI 266

Query: 61  LAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           +AGY Q G    AL  F  ++    ++ +E ++ SVLSAC +L  L  G+  H YI R  
Sbjct: 267 IAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 120 LK---------------------------------MTVTLGTALVDMYSKCGNMNKAMDF 146
           +                                  + V   TAL++ Y K G+  +A + 
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREV 386

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M  R+V  WT++I G   NG  ++++ELF  M ++G  PN  T  +VL  C  +  +
Sbjct: 387 FDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYL 446

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             G++ H  ++R     E  +     ++ +Y R+G +  A  V +++  +     W +++
Sbjct: 447 GYGKQIHCRAIRSLQ--EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMI 504

Query: 266 NA 267
            A
Sbjct: 505 VA 506



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 131/280 (46%), Gaps = 35/280 (12%)

Query: 6   GCLGYCQKVFDGI--HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           GC    +++FD I     +     +++S  AK G +  AR +F +MPERD ++W  M+ G
Sbjct: 78  GCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVG 137

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
             + G+  +A+  F  M    +  ++  + +VLS+C    A   GR  H ++ +  L   
Sbjct: 138 LNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSC 197

Query: 124 VTLGTALVDMYSKCGN-------------------------------MNKAMDFFWGMKE 152
           V +  +++ MY KCG+                               M+ A+  F  M+E
Sbjct: 198 VPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEE 257

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           R++ +W ++I G   NG  + +L+ FS M  A  + P+E T  SVL  C  + +++ G++
Sbjct: 258 RSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQ 317

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
               + R  G+    +    L+  Y ++G ++ A  +++K
Sbjct: 318 MHSYILRT-GMPYSSQIMNALISTYAKSGSVETARRIMDK 356


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 290/442 (65%), Gaps = 2/442 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    TA++   +KCG + +ARK+FD + +++ +AWNAM++GY Q G + + + ++  M+
Sbjct: 139 DRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMK 198

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +     + ++ V+ LSAC   GALD GR     I   R+ ++V LG+ALV+MY++CG ++
Sbjct: 199 VAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVD 258

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA  +F  ++ERNV TWTS+I G  M+G G ++++L+ LM+  G  PN+VTFV+VL  C 
Sbjct: 259 KARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACA 318

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGA 260
             GL+ EGR+ F  M+R YG+ P +EHY  +VD+YGRAGRL+EA+  I + MP  P    
Sbjct: 319 HAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEV 378

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           W A+L AC+M+KN  +G   + +L+ LE +N   +VLLSNIYA S     V  VR  M  
Sbjct: 379 WTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALSGKMYHVEKVRNTMIK 438

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           + +KK  G S+IE+    H F  G+++H +  EI   L E+  R+  AGY+  T  V+++
Sbjct: 439 RRLKKQIGYSLIELGGTSHLFRMGEKSHQKTREIYQYLEELVHRISAAGYMPETESVLHE 498

Query: 381 IEEEEKEDTLCKHSEKVAIAFGL-ISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           +EEEE+E  L  HSEK+A+A+GL +S     P+R++KNLR+C DCH   K +S V NREI
Sbjct: 499 LEEEEREGALRYHSEKLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAIKFMSAVENREI 558

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD++RFHHFK+GKCSC  YW
Sbjct: 559 IVRDKHRFHHFKDGKCSCLEYW 580


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/440 (41%), Positives = 277/440 (62%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     +++S    CG    A+ +FD M  R  ++WN M+AGY+Q G   EA++LF  M 
Sbjct: 344 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 403

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++  E++++ V  AC+ L AL  G+  H +  +  L   + + ++++DMY+K G + 
Sbjct: 404 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG 463

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  ++E++V +W  +I G  ++G G+++LELF  M + G++P++ TF  +L  C 
Sbjct: 464 LSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 523

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVE+G E+F+ M   + IEP LEHY C+VD+ GRAGR+D+AL +I +MP  P +  W
Sbjct: 524 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 583

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            +LL++CR++ N  +GE  + KL+ELE +    YVL+SN++A S  WD V  VR  MK  
Sbjct: 584 SSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDI 643

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K  GCS IEV  +VH F  GDE  P   E+      +  ++   GY  +T  V++D+
Sbjct: 644 GLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDL 703

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE+K   L  HSEK+AI+FGL++  +G+P+R+ KNLR+C DCH+  K ISKV NR+I+V
Sbjct: 704 EEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVV 763

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHF++G CSC  YW
Sbjct: 764 RDNKRFHHFRDGICSCGDYW 783



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 44/286 (15%)

Query: 22  DVVCQTAMISACAKCGDVDLA-RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           DV    A+I+   KCG V+ A +++FD M  +   +WNA+L GYAQ    R+AL L+  M
Sbjct: 242 DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQM 301

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
               +  +  ++ S+L AC+ + +L  G   H +  RN L +   +G +L+ +Y  CG  
Sbjct: 302 TDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKP 361

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F GM+ R++ +W  +I G + NG  ++++ LF  M   G++P E+  + V   C
Sbjct: 362 FAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGAC 421

Query: 201 CVVGLVEEGREH-----------------------------------FDSMRREYGIEPW 225
             +  +  G+E                                    FD + RE  +  W
Sbjct: 422 SQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL-REKDVASW 480

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
                 ++  YG  GR  EAL++  KM    +KP    +  +L AC
Sbjct: 481 ----NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMAC 522



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 134/292 (45%), Gaps = 35/292 (11%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLM 80
           D V  T +I+  + CG    +R +FD++  ++   WNA+++ Y +     +A+ +F  L+
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            + + K +  ++  V+ AC  L  L  G+  H    +  L   V +G AL+ MY KCG +
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259

Query: 141 NKAMD-FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            +A+   F  M  + V +W +++ G A N    K+L+L+  M  +G+ P+  T  S+L  
Sbjct: 260 EEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 319

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPW------------------------LEH-----Y 229
           C  +  +  G E H  ++R    ++P+                        +EH     +
Sbjct: 320 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSW 379

Query: 230 GCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGE 278
             ++  Y + G  DEA+++  +M    ++P+  A   +  AC       +G+
Sbjct: 380 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGK 431



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 33/171 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+G  Q++FD + E DV                                +WN +
Sbjct: 455 MYAKGGCIGLSQRIFDRLREKDVA-------------------------------SWNVI 483

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           +AGY   G+ +EAL LF  M    +K ++ +   +L AC+H G ++ G  + +  +  + 
Sbjct: 484 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN 543

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           ++  +   T +VDM  + G ++ A+     M  + +   W+S++    ++G
Sbjct: 544 IEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHG 594



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEV----SMVSVLSACTHLGALDQGRWAHVYIE-RNRL 120
           + G  +EAL      +  DV L+      +M  +L AC     ++ GR  H  +    + 
Sbjct: 79  ESGNLKEALDFLQ-RESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQF 137

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS- 179
                L T ++ MYS CG+ + +   F  ++ +N++ W +++     N   E ++ +FS 
Sbjct: 138 CNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSE 197

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGR 238
           L+     +P+  T   V++ C   GL++ G  +    M  +  +   +     L+ +YG+
Sbjct: 198 LISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGK 255

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            G ++EA+  +  +       +W ALL  C   +N++
Sbjct: 256 CGLVEEAVKRVFDLMDTKTVSSWNALL--CGYAQNSD 290


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 278/446 (62%), Gaps = 1/446 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            G+H  D+    +++S  AK G +D A  +FDEM  +D ++++A+++GY Q G++ EA  
Sbjct: 369 SGVHA-DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 427

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           +F  MQ  +V+ +  +MVS++ AC+HL AL  GR +H  +    L    ++  AL+DMY+
Sbjct: 428 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 487

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG ++ +   F  M  R++ +W ++I G  ++G G+++  LF  M   G  P+ VTF+ 
Sbjct: 488 KCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFIC 547

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C   GLV EG+  F  MR  YG+ P +EHY C+VDL  R G LDEA + I  MP++
Sbjct: 548 LLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 607

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
                W ALL ACR+YKN ++G+  SR + EL  +  G +VLLSNIY+ +  +D    VR
Sbjct: 608 ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVR 667

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
            I K +G KK PGCS IE++  +H F  GD++HP+  EI   L  I   +K  GY  +T+
Sbjct: 668 IIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTS 727

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V+ D+EEEEKE  L  HSEK+AIA+G++SL E   I + KNLRVC DCH V K IS + 
Sbjct: 728 FVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLK 787

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            R IIVRD NRFHHFK G+CSC  +W
Sbjct: 788 RRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 14/249 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL-HLFH 78
           + D+   TA++    KC  +  A  +F  MP RD +AWNAMLAGYA  G    A+ HL  
Sbjct: 157 QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 216

Query: 79  L-MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER----------NRLKMTVTLG 127
           + MQ+H ++ N  ++V++L      GAL QG   H Y  R          ++L   V LG
Sbjct: 217 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLG 276

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV- 186
           TAL+DMY+KCG++  A   F  M  RN  TW+++IGG  +     ++  LF  M   G+ 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
             +  +  S LR C  +  +  G E   ++  + G+   L     L+ +Y +AG +D+A+
Sbjct: 337 FLSPTSIASALRACASLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 247 DVINKMPMK 255
            + ++M +K
Sbjct: 396 ALFDEMAVK 404



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 9/246 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            K+ DG     V+  TA++   AKCG +  AR++FD MP R+ + W+A++ G+  C +  
Sbjct: 267 SKLTDG-----VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMT 321

Query: 72  EALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           +A  LF  M    +  L+  S+ S L AC  L  L  G   H  + ++ +   +T G +L
Sbjct: 322 QAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 381

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + MY+K G +++A+  F  M  ++  ++++++ G   NG  E++  +F  M+   V P+ 
Sbjct: 382 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 441

Query: 191 VTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            T VS++  C  +  ++ GR  H   + R    E  +     L+D+Y + GR+D +  V 
Sbjct: 442 ATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI--CNALIDMYAKCGRIDLSRQVF 499

Query: 250 NKMPMK 255
           N MP +
Sbjct: 500 NMMPSR 505



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 14/242 (5%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA--LHLFHLMQIHDVKLNEVSMVS 94
           G +  A  +FD++P  D   +N ++  Y+    +  A  LHL+  M  H V  N  +   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
            L AC+ L     GR  H +     L+  + + TAL+DMY KC  +  A   F  M  R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 155 VYTWTSVIGGLAMNGAGEKSL-ELFSL-MKQAGVRPNEVTFVSVLRGCCVVGLVEEG--- 209
           +  W +++ G A +G    ++  L S+ M+   +RPN  T V++L      G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 210 -----REHFDSMRREYG-IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
                R    S R     +   +     L+D+Y + G L  A  V + MP +     W A
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV-TWSA 309

Query: 264 LL 265
           L+
Sbjct: 310 LI 311


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/442 (40%), Positives = 283/442 (64%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E ++V  +++     KCG +    ++   MP ++ +AWN ++AG AQ G   E L  +++
Sbjct: 216 EFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNM 275

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M++   + ++++ VSV+S+C+ L  L QG+  H  + +    + V++ ++L+ MYS+CG 
Sbjct: 276 MKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGC 335

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  ++  F   +  +V  W+S+I     +G G ++++LF+ M+Q  +  N+VTF+S+L  
Sbjct: 336 LEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYA 395

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL E+G + FD M  +YG++P LEHY C+VDL GR G ++EA  +I  MP+K    
Sbjct: 396 CSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVI 455

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W  LL+AC+++K TEM    S ++  L+ ++   YVLLSNI+A  K WD V +VR+ M+
Sbjct: 456 TWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMR 515

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            + +KK PG S +EV  ++H+F  GD++HP+  EI   L E++  +K  GYV + + V++
Sbjct: 516 DRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLH 575

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D++ E+KE +L  HSEK+AIAF L+    G PIR++KNLRVC DCH   K IS++ NREI
Sbjct: 576 DMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREI 635

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD +RFHHFK G+CSC  YW
Sbjct: 636 IVRDSSRFHHFKNGRCSCGDYW 657



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 133/250 (53%), Gaps = 3/250 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G L     +F  +   +++    +I+   + GD   ARKMFDEMPER+   WNAM
Sbjct: 96  LYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAM 155

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AG  Q   + E L LF  M       +E ++ SVL  C  L AL  GR  H Y+ +   
Sbjct: 156 VAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGF 215

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  + + ++L  MY KCG++ +       M  +NV  W ++I G A NG  E+ L+ +++
Sbjct: 216 EFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNM 275

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           MK AG RP+++TFVSV+  C  +  + +G++ H + ++   G    +     L+ +Y R 
Sbjct: 276 MKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKA--GASLIVSVISSLISMYSRC 333

Query: 240 GRLDEALDVI 249
           G L+ +L V 
Sbjct: 334 GCLEYSLKVF 343



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 34/210 (16%)

Query: 88  NEVSMVS-VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           +E S+ S +L +C    +L  G+  H  I  +       +   L+++YSKCG ++ A+  
Sbjct: 50  SEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITL 109

Query: 147 F-----------------------W--------GMKERNVYTWTSVIGGLAMNGAGEKSL 175
           F                       W         M ERNV TW +++ GL      E+ L
Sbjct: 110 FGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGL 169

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
            LFS M + G  P+E    SVLRGC  +  +  GR+    +R+  G E  L     L  +
Sbjct: 170 GLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRK-CGFEFNLVVVSSLAHM 228

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           Y + G L E   +I  MP + +  AW  L+
Sbjct: 229 YMKCGSLGEGERLIRAMPSQ-NVVAWNTLI 257



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 33/174 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  GCL Y  KVF      DVVC ++MI+A                            
Sbjct: 329 MYSRCGCLEYSLKVFLECENGDVVCWSSMIAA---------------------------- 360

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
              Y   G+  EA+ LF+ M+   ++ N+V+ +S+L AC+H G  ++G ++  + +E+  
Sbjct: 361 ---YGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYG 417

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGE 172
           +K  +   T +VD+  + G++ +A      M  + +V TW +++    ++   E
Sbjct: 418 VKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTE 471


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/440 (41%), Positives = 285/440 (64%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   ++++   A+CG +  A  +FD++  ++ ++WNA++AGYA+ G+  EAL LF  MQ
Sbjct: 209 NVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQ 268

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +  E +  ++LS+C+ +G L+QG+W H ++ ++  K+   +G  L+ MY+K G++ 
Sbjct: 269 REGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIR 328

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + + +V +  S++ G A +G G+++ + F  M + G+ PN++TF+SVL  C 
Sbjct: 329 DAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACS 388

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              L++EG+ +F  MR+ Y IEP + HY  +VDL GRAG LD+A   I +MP++P    W
Sbjct: 389 HARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIW 447

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL A +M+KNTEMG  A++++ EL+    G + LL+NIYA +  W+ V  VR+IMK  
Sbjct: 448 GALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDS 507

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK P CS +EV+  VH F A D  HP+  +I  M  ++++++K  GYV +T+ V+  +
Sbjct: 508 GVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFV 567

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           +++EKE  L  HSEK+A++F L++   G  IRI+KN+RVC DCH   K +S V  REIIV
Sbjct: 568 DQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIV 627

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF +G CSC  YW
Sbjct: 628 RDTNRFHHFCDGFCSCGDYW 647



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 140/240 (58%), Gaps = 3/240 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           V +   + D+V Q +++   A+CG ++ AR++FDEMP RD ++W +M+ GYAQ  ++ +A
Sbjct: 100 VLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDA 159

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L LF  M     + NE ++ S++  C ++ + + GR  H    +      V +G++LVDM
Sbjct: 160 LLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDM 219

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y++CG + +AM  F  +  +N  +W ++I G A  G GE++L LF  M++ G RP E T+
Sbjct: 220 YARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTY 279

Query: 194 VSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            ++L  C  +G +E+G+  H   M+    +  ++ +   L+ +Y ++G + +A  V +K+
Sbjct: 280 SALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGN--TLLHMYAKSGSIRDAEKVFDKL 337



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 2/196 (1%)

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           S+  LH+  L+    ++ +     ++L  CT LG L +G+  H ++  +  K  + +  +
Sbjct: 55  SKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNS 114

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ MY++CG++  A   F  M  R++ +WTS+I G A N     +L LF  M   G  PN
Sbjct: 115 LLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPN 174

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           E T  S+++ C  +     GR+   +   +YG    +     LVD+Y R G L EA+ V 
Sbjct: 175 EFTLSSLVKCCGYMASYNCGRQ-IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVF 233

Query: 250 NKMPMKPHAGAWGALL 265
           +K+  K    +W AL+
Sbjct: 234 DKLGCKNEV-SWNALI 248



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 32/173 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVFD + + DVV   +M                               
Sbjct: 320 MYAKSGSIRDAEKVFDKLVKVDVVSCNSM------------------------------- 348

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L GYAQ G  +EA   F  M    ++ N+++ +SVL+AC+H   LD+G+     + +  +
Sbjct: 349 LIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNI 408

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGE 172
           +  V+    +VD+  + G +++A  F   M  E  V  W +++G   M+   E
Sbjct: 409 EPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTE 461


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/440 (41%), Positives = 277/440 (62%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     +++S    CG    A+ +FD M  R  ++WN M+AGY+Q G   EA++LF  M 
Sbjct: 442 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 501

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++  E++++ V  AC+ L AL  G+  H +  +  L   + + ++++DMY+K G + 
Sbjct: 502 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG 561

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  ++E++V +W  +I G  ++G G+++LELF  M + G++P++ TF  +L  C 
Sbjct: 562 LSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 621

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVE+G E+F+ M   + IEP LEHY C+VD+ GRAGR+D+AL +I +MP  P +  W
Sbjct: 622 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 681

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            +LL++CR++ N  +GE  + KL+ELE +    YVL+SN++A S  WD V  VR  MK  
Sbjct: 682 SSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDI 741

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K  GCS IEV  +VH F  GDE  P   E+      +  ++   GY  +T  V++D+
Sbjct: 742 GLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDL 801

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE+K   L  HSEK+AI+FGL++  +G+P+R+ KNLR+C DCH+  K ISKV NR+I+V
Sbjct: 802 EEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVV 861

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHF++G CSC  YW
Sbjct: 862 RDNKRFHHFRDGICSCGDYW 881



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 44/290 (15%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+   ++V   A I+A  +CG +  + ++FD M  +   +WNA+L GYAQ    R+AL L
Sbjct: 337 GLQSNELVAN-AFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDL 395

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           +  M    +  +  ++ S+L AC+ + +L  G   H +  RN L +   +G +L+ +Y  
Sbjct: 396 YLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYIC 455

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG    A   F GM+ R++ +W  +I G + NG  ++++ LF  M   G++P E+  + V
Sbjct: 456 CGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCV 515

Query: 197 LRGCCVVGLVEEGREH-----------------------------------FDSMRREYG 221
              C  +  +  G+E                                    FD + RE  
Sbjct: 516 CGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL-REKD 574

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNAC 268
           +  W      ++  YG  GR  EAL++  KM    +KP    +  +L AC
Sbjct: 575 VASW----NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMAC 620



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 127/260 (48%), Gaps = 12/260 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLM 80
           D V  T +I+  + CG    +R +FD++  ++   WNA+++ Y +     +A+ +F  L+
Sbjct: 33  DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            + + K +  ++  V+ AC  L  L  G+  H    +  L   V +G AL+ MY KCG +
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS--LMKQAGVRPNEVTFVSVLR 198
            +A+  F  M ERN+ +W S+I G + NG  ++S   F   L+ +    P+  T V+VL 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C     +E+G      +  + G+   L     L+D+Y +   L EA  + +K   K + 
Sbjct: 213 VCAGEEDIEKGMA-VHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKND-KKNI 270

Query: 259 GAWGALL-------NACRMY 271
            +W +++       + CR +
Sbjct: 271 VSWNSMIGGYAREEDVCRTF 290



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 10/259 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I+   KCG V+ A K+F+ MPER+ ++WN+++ G+++ G  +E+ + F  M 
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 82  IHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           + +     +  ++V+VL  C     +++G   H    +  L   + +  +L+DMYSKC  
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK--QAGVRPNEVTFVSVL 197
           +++A   F    ++N+ +W S+IGG A      ++  L   M+   A ++ +E T ++VL
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C     ++  +E H  S R  +G++         +  Y R G L  +  V + M  K 
Sbjct: 315 PVCLERSELQSLKELHGYSWR--HGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKT 372

Query: 257 HAGAWGALLNACRMYKNTE 275
              +W ALL  C   +N++
Sbjct: 373 -VSSWNALL--CGYAQNSD 388



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 137/297 (46%), Gaps = 36/297 (12%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G++E +++   ++I   +KC  +  A+ +FD+  +++ ++WN+M+ GYA+        +L
Sbjct: 234 GLNE-ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYL 292

Query: 77  FHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
              MQ  D K+  +E ++++VL  C     L   +  H Y  R+ L+    +  A +  Y
Sbjct: 293 LQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAY 352

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           ++CG +  +   F  M  + V +W +++ G A N    K+L+L+  M  +G+ P+  T  
Sbjct: 353 TRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIG 412

Query: 195 SVLRGCCVVGLVEEGRE-HFDSMRREYGIEPW------------------------LEH- 228
           S+L  C  +  +  G E H  ++R    ++P+                        +EH 
Sbjct: 413 SLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR 472

Query: 229 ----YGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGE 278
               +  ++  Y + G  DEA+++  +M    ++P+  A   +  AC       +G+
Sbjct: 473 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGK 529



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 33/171 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+G  Q++FD + E DV                                +WN +
Sbjct: 553 MYAKGGCIGLSQRIFDRLREKDVA-------------------------------SWNVI 581

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           +AGY   G+ +EAL LF  M    +K ++ +   +L AC+H G ++ G  + +  +  + 
Sbjct: 582 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN 641

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           ++  +   T +VDM  + G ++ A+     M  + +   W+S++    ++G
Sbjct: 642 IEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHG 692


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 284/447 (63%), Gaps = 30/447 (6%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAMLAGYAQCGKSREALHLF 77
           E + + Q  ++   AKCG +D A K++D+    +R+   WN++LAGYA  G  +E+ + F
Sbjct: 411 EEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHF 470

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             M   D++ + ++MV++++                          + L TALVDMYSKC
Sbjct: 471 LEMLESDIEYDVLTMVTIVN-------------------------LLVLETALVDMYSKC 505

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G + KA   F  M  +N+ +W ++I G + +G  +++L L+  M + G+ PNEVTF+++L
Sbjct: 506 GAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAIL 565

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   GLVEEG   F SM+ +Y IE   EHY C+VDL GRAGRL++A + + KMP++P 
Sbjct: 566 SACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPE 625

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              WGALL ACR++K+ +MG LA+++L EL+ +N G YV++SNIYA +  W  V ++RQ+
Sbjct: 626 VSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQM 685

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           MK KGVKK PG S IE++ E+  F AG +THP+  EI   L  ++ + K  GY+ +T+ +
Sbjct: 686 MKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFI 745

Query: 378 MY---DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
           +    DI+EEE+E+ L +HSE++A++ GLISL +   IR+ KNLR+C DCH  TK ISK+
Sbjct: 746 LQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKI 805

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
             R II RD NRFHHF+ GKCSC  YW
Sbjct: 806 TGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 162/326 (49%), Gaps = 17/326 (5%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     A+I   AKC D +   K+FDEM ER+ + WN++++  AQ G   +AL LF  MQ
Sbjct: 209 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 268

Query: 82  IHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
             +  ++ ++ +  ++L+ C +    +QGR  H ++ R  +   + + T LV MYS+CG 
Sbjct: 269 ESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 328

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A + F  M ERN Y+W S+I G   NG  +++L LF  M+  G++P+  +  S+L  
Sbjct: 329 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +   ++GRE  + + R    E  +     LVD+Y + G +D A  V ++   K    
Sbjct: 389 CVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKCGSMDYAWKVYDQTIKKDRNT 447

Query: 260 A-WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
           A W ++L     Y N         K ++ E+ NH   +L S+I  +      ++N+  ++
Sbjct: 448 ALWNSILAG---YAN---------KGLKKESFNHFLEMLESDIEYDVLTMVTIVNLL-VL 494

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAG 344
           +   V     C  I   R V +   G
Sbjct: 495 ETALVDMYSKCGAITKARTVFDNMNG 520



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 143/266 (53%), Gaps = 28/266 (10%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +++ +T ++   ++CG ++ A+++F+ M ER+  +WN+M+ GY Q G+++EAL LF  MQ
Sbjct: 312 NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ 371

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           ++ +K +  S+ S+LS+C  L    +GR  H +I RN ++    L   LVDMY+KCG   
Sbjct: 372 LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCG--- 428

Query: 142 KAMDFFWGM------KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
            +MD+ W +      K+RN   W S++ G A  G  ++S   F  M ++ +  + +T V+
Sbjct: 429 -SMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVT 487

Query: 196 VLRGCCV----------VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           ++    +           G + + R  FD+M  +  I  W      ++  Y + G   EA
Sbjct: 488 IVNLLVLETALVDMYSKCGAITKARTVFDNMNGK-NIVSW----NAMISGYSKHGCSKEA 542

Query: 246 LDVINKMP---MKPHAGAWGALLNAC 268
           L +  +MP   M P+   + A+L+AC
Sbjct: 543 LILYEEMPKKGMYPNEVTFLAILSAC 568



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 10/262 (3%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q + +G + PD    T ++   A+ G +D    ARK+F+EMPER+  AWN M+  YA+
Sbjct: 94  HTQMISNG-YNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYAR 152

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
                EA  +F  M    V  +  +  S L  C  L + D G+  H  +     K    +
Sbjct: 153 VDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 212

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-- 184
           G AL+DMY+KC +    +  F  M ERN  TW S+I   A  G    +L LF  M+++  
Sbjct: 213 GNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESED 272

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           G++P++ TF ++L  C       +GR+ H   +R        +E    LV +Y   GRL+
Sbjct: 273 GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETE--LVHMYSECGRLN 330

Query: 244 EALDVINKMPMKPHAGAWGALL 265
            A ++ N+M  + +A +W +++
Sbjct: 331 YAKEIFNRMAER-NAYSWNSMI 351



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
           MY++ G +   + VFD ++  ++V   AMIS  +K G    A  +++EMP++    + + 
Sbjct: 501 MYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVT 560

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQ 81
           + A+L+  +  G   E L +F  MQ
Sbjct: 561 FLAILSACSHTGLVEEGLRIFTSMQ 585


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/441 (41%), Positives = 269/441 (60%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++    ++S  AKCG ++ A + F+EM  RD +++ A+++GY Q G S E L +F  MQ
Sbjct: 359 DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQ 418

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +   + ++ SVL AC HL  L  G  +H Y           +  AL+DMY+KCG ++
Sbjct: 419 LSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKID 478

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M +R + +W ++I    ++G G ++L LF  M+  G++P++VTF+ ++  C 
Sbjct: 479 TARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACS 538

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EG+  F++M +++GI P +EHY C+VDL  RAG   E    I KMP++P    W
Sbjct: 539 HSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVW 598

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL+ACR+YKN E+GE  S+K+ +L  ++ G +VLLSN+Y+    WD    VR   K +
Sbjct: 599 GALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQ 658

Query: 322 GVKKLPGCSVIEVDREVHEFFAGD-ETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           G +K PGCS IE+   VH F  G   +HP+  +I   L E+   +K  GY A ++ V  D
Sbjct: 659 GFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQD 718

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +EEEEKE  L  HSEK+AIAFG++SL     I + KNLRVC DCH   K IS V  R+I 
Sbjct: 719 VEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDIT 778

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD +RFHHFK+G C+C  +W
Sbjct: 779 VRDASRFHHFKDGICNCGDFW 799



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 15/240 (6%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLF-HL 79
           DVV  T ++    KC  +D AR++FD M   ++ + W+AM+  Y  C   REAL LF  L
Sbjct: 254 DVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQL 313

Query: 80  MQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           + + D  + L+ V++ +V+  C +L  L  G   H Y  ++   + + +G  L+ MY+KC
Sbjct: 314 LMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKC 373

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G +N AM FF  M  R+  ++T++I G   NG  E+ L +F  M+ +G+ P + T  SVL
Sbjct: 374 GIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVL 433

Query: 198 RGCC-VVGLVEEGREHFDSMRREYGIEPWLEH----YGCLVDLYGRAGRLDEALDVINKM 252
             C  + GL      H+ S    Y I             L+D+Y + G++D A  V ++M
Sbjct: 434 PACAHLAGL------HYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM 487



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 5/235 (2%)

Query: 36  CGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           C ++ +AR +FD+MP R  + + WN ++  YA  G   EA+ L++ M  + +  N  +  
Sbjct: 64  CSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFP 123

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            VL AC+ L    +GR  H  I+R RL+  V + TALVD Y+KCG ++ A + F  M +R
Sbjct: 124 FVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKR 183

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           +V  W S+I G +++      +    +  Q  V PN  T V VL     V  +  G+E H
Sbjct: 184 DVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIH 243

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              +RR + +   +   G ++D+YG+   +D A  + + M +  +   W A++ A
Sbjct: 244 GFCVRRGF-VGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 140/264 (53%), Gaps = 10/264 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA-QCGKSREALHLFH 78
           E +V   TA++   AKCG +D A+++FD+M +RD +AWN+M++G++   G   E   L  
Sbjct: 151 ESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLV 210

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ +DV  N  ++V VL A   + +L  G+  H +  R      V +GT ++D+Y KC 
Sbjct: 211 QMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQ 269

Query: 139 NMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFS---LMKQAGVRPNEVTFV 194
            ++ A   F  M   +N  TW++++G   +     ++LELF    ++K   +  + VT  
Sbjct: 270 CIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLA 329

Query: 195 SVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           +V+R C  +  +  G   H  +++  + ++  + +   L+ +Y + G ++ A+   N+M 
Sbjct: 330 TVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGN--TLLSMYAKCGIINGAMRFFNEMD 387

Query: 254 MKPHAGAWGALLNACRMYKNTEMG 277
           ++  A ++ A+++      N+E G
Sbjct: 388 LRD-AVSFTAIISGYVQNGNSEEG 410


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/441 (39%), Positives = 278/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++ Q A+++   + G  D AR+ F+ +  +D ++W +M+      G   EAL LF+ ++
Sbjct: 483 DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +++ + ++++S LSA  +L +L +G+  H ++ R    +   + ++LVDMY+ CG + 
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  +K+R++  WTS+I    M+G G +++ LF  M    V P+ +TF+++L  C 
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACS 662

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL+ EG+  F+ M+  Y +EPW EHY C+VDL  R+  L+EA   +  MP+KP +  W
Sbjct: 663 HSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVW 722

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL AC ++ N E+GELA+++L++ +TKN G Y L+SNI+A    W+ V  VR  MK  
Sbjct: 723 CALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGN 782

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL-KLAGYVANTNPVMYD 380
           G+KK PGCS IEVD ++H F A D++HP+ ++I + L + ++ L K  GY+A T  V ++
Sbjct: 783 GLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHN 842

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           + EEEK   L +HSE++A+ +GL+   +G  IRI KNLR+C DCH   K+ S+V  R ++
Sbjct: 843 VSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALV 902

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFHHF+ G CSC  +W
Sbjct: 903 VRDANRFHHFERGLCSCGDFW 923



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 6/243 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++    KCG +  A K+FDEM ER    WNAM+  +   GK  EA+ L+  M++  V 
Sbjct: 83  TKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVA 142

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  +  SVL AC  LG    G   H    +      V +  AL+ MY KCG++  A   
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVL 202

Query: 147 FWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           F G  M++ +  +W S+I      G   ++L LF  M++ GV  N  TFV+ L+G     
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262

Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            V+ G   H  +++  +  + ++ +   L+ +Y + GR+++A  V   M  + +  +W  
Sbjct: 263 FVKLGMGIHGAALKSNHFADVYVAN--ALIAMYAKCGRMEDAERVFASMLCRDYV-SWNT 319

Query: 264 LLN 266
           LL+
Sbjct: 320 LLS 322



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 129/251 (51%), Gaps = 5/251 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  DV    A+I+  AKCG ++ A ++F  M  RD ++WN +L+G  Q    R+AL+ F 
Sbjct: 279 HFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFR 338

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ    K ++VS++++++A    G L  G+  H Y  RN L   + +G  L+DMY+KC 
Sbjct: 339 DMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCC 398

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +      F  M E+++ +WT++I G A N    +++ LF  ++  G+  + +   SVLR
Sbjct: 399 CVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLR 458

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            C  +      RE H    +R+   +  L++   +V++YG  G  D A      +  K  
Sbjct: 459 ACSGLKSRNFIREIHGYVFKRDLA-DIMLQN--AIVNVYGEVGHRDYARRAFESIRSKDI 515

Query: 258 AGAWGALLNAC 268
             +W +++  C
Sbjct: 516 V-SWTSMITCC 525



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDE--MPERDPIAWNAMLAGYAQCGKSREAL 74
           G  E   VC  A+I+   KCGD+  AR +FD   M + D ++WN++++ +   GK  EAL
Sbjct: 175 GFGEFVFVCN-ALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEAL 233

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
            LF  MQ   V  N  + V+ L        +  G   H    ++     V +  AL+ MY
Sbjct: 234 SLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMY 293

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
           +KCG M  A   F  M  R+  +W +++ GL  N     +L  F  M+ +  +P++V+ +
Sbjct: 294 AKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVL 353

Query: 195 SVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
           +++      G +  G+E H  ++R   G++  ++    L+D+Y +
Sbjct: 354 NLIAASGRSGNLLNGKEVHAYAIRN--GLDSNMQIGNTLIDMYAK 396



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 133/272 (48%), Gaps = 36/272 (13%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+  C+ +    F+ +HE D+                               I+W  +
Sbjct: 393 MYAKCCCVKHMGYAFECMHEKDL-------------------------------ISWTTI 421

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ     EA++LF  +Q+  + ++ + + SVL AC+ L + +  R  H Y+ +  L
Sbjct: 422 IAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL 481

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L  A+V++Y + G+ + A   F  ++ +++ +WTS+I     NG   ++LELF  
Sbjct: 482 A-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYS 540

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           +KQ  ++P+ +  +S L     +  +++G+E H   +R+ + +E  +     LVD+Y   
Sbjct: 541 LKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA--SSLVDMYACC 598

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ +  + + +  +     W +++NA  M+
Sbjct: 599 GTVENSRKMFHSVKQRDLI-LWTSMINANGMH 629



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 4/174 (2%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C  + AL QG+  H  + ++ L  +  L T L+ MY KCG++  A+  F  M ER 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           ++TW +++G    +G   +++EL+  M+  GV  +  TF SVL+ C  +G    G E   
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAE-IH 168

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM-KPHAGAWGALLNA 267
            +  + G   ++     L+ +YG+ G L  A  + + + M K    +W ++++A
Sbjct: 169 GVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/422 (43%), Positives = 266/422 (63%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV   +++I   AKC  VD + ++F  +P+ D I+WN+++AG  Q G   E L  F 
Sbjct: 227 YDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ 286

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M I  +K N VS  S++ AC HL  L  G+  H YI R+R    V + +ALVDMY+KCG
Sbjct: 287 QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCG 346

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+  A   F  M+  ++ +WT++I G A++G    ++ LF  M+  GV+PN V F++VL 
Sbjct: 347 NIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLT 406

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+E  ++F+SM ++Y I P LEHY  + DL GR GRL+EA + I+ M ++P  
Sbjct: 407 ACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTG 466

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL ACR++KN E+ E  S+KL  ++ +N GAYVLLSNIY+ +  W     +R  M
Sbjct: 467 SVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAM 526

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + KG+KK P CS IE+  +VH F AGD++HP Y+ I   L  +  +++  GYV +T  V+
Sbjct: 527 RDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVL 586

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+EEE+K   LC HSE++AI FG+IS   G  IR+ KNLRVC DCH  TK ISK+  RE
Sbjct: 587 HDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGRE 646

Query: 439 II 440
           I+
Sbjct: 647 IV 648



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           RK+F+ MP+RD ++WN +++G AQ G   +AL +   M   D++ +  ++ SVL      
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
             L +G+  H Y  RN     V +G++L+DMY+KC  ++ +   F+ + + +  +W S+I
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYG 221
            G   NG  ++ L+ F  M  A ++PN V+F S++  C  +  +  G++ H   +R  + 
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              ++     LVD+Y + G +  A  + +KM +     +W A++
Sbjct: 330 GNVFIA--SALVDMYAKCGNIRTARWIFDKMELYDMV-SWTAMI 370


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/450 (40%), Positives = 274/450 (60%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +K+F  +   +++   A++S     G ++ A+  F+EMP ++ +    M++G AQ G   
Sbjct: 348 RKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           E L LF  M++   +  + +    L+AC+ LGAL+ GR  H  +     + ++++G A++
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMI 467

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
            MY+KCG +  A   F  M   ++ +W S+I  L  +G G K++ELF  M + GV P+ +
Sbjct: 468 SMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRI 527

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TF++VL  C   GLVE+GR +F+SM   YGI P  +HY  +VDL+ RAG    A  VI+ 
Sbjct: 528 TFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDS 587

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP KP A  W ALL  CR++ N ++G  A+ +L +L  +N G YVLLSNIYA+   W+ V
Sbjct: 588 MPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDV 647

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR++M+ + V+K P CS IEV+ +VH F   D+ HP    +   L ++   +K  GY+
Sbjct: 648 AKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYI 707

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +T  V++D+E E+KE  L  HSEK+A+ FG++ L     +R+ KN+R+C DCH+  K +
Sbjct: 708 PDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFM 767

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SKV  REIIVRDR RFHHFK G CSC+ YW
Sbjct: 768 SKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 135/277 (48%), Gaps = 36/277 (12%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +K+FD + + D +  T MI+   +  D++ AR++F+ M E    AWNAM++GY  CG  +
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL----KMTVTLG 127
           EAL L   M+   ++ ++++  +++SAC ++G+   G+  H YI +N L       +++ 
Sbjct: 272 EALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVS 331

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV-------------------------- 161
            AL+ +Y K   +++A   F+ M  RN+ TW ++                          
Sbjct: 332 NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391

Query: 162 -----IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
                I GLA NG G++ L+LF  M+  G  P +  F   L  C V+G +E GR+   + 
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQ-LHAQ 450

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
               G E  L     ++ +Y + G ++ A  V   MP
Sbjct: 451 LVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 181/400 (45%), Gaps = 69/400 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWN 58
           MY +   + Y +++F+ I  PD + +T +I+A    G+++L R++F+  P   RD + +N
Sbjct: 57  MYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYN 116

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT-HLGALDQGRWAHVYIER 117
           AM+ GYA  G    AL LF  M+  D + ++ +  SVLSA    +G   Q    H  + +
Sbjct: 117 AMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVK 176

Query: 118 NRLK-MTVTLGTALVDMYSK--------CGNMNKAMDFFWGMKERNVYTWTSVIGGLA-- 166
             +  ++ ++  AL+ +Y K        C  M  A   F  M +R+  TWT++I G    
Sbjct: 177 TGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRN 236

Query: 167 --MNGAGE---------------------------KSLELFSLMKQAGVRPNEVTFVSVL 197
             +NGA E                           ++L L   M+  G++ +++T+ +++
Sbjct: 237 DDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTII 296

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC------LVDLYGRAGRLDEALDVIN 250
             C  VG  + G++ H   ++ E  + P   H  C      L+ LY +  ++DEA  +  
Sbjct: 297 SACANVGSFQMGKQMHAYILKNE--LNP--NHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
            MP++ +   W A+L+    Y N    E A     E+  KN     ++ +  A++   D 
Sbjct: 353 AMPVR-NIITWNAILSG---YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDE 408

Query: 311 VINVRQIMKAKGVKK--------LPGCSV---IEVDREVH 339
            + + + M+  G +         L  CSV   +E  R++H
Sbjct: 409 GLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLH 448


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/455 (41%), Positives = 283/455 (62%), Gaps = 9/455 (1%)

Query: 13  KVFDGIHEPDVVCQTAMI---SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
            +F   H+ D +  TA++   S C + GD   A K+FDEMP RD +AWN M++   +  +
Sbjct: 64  NIFKYGHQWDTLLLTAVMDLYSXCQRGGD---ACKVFDEMPPRDTVAWNVMISCCIRNNR 120

Query: 70  SREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           +R+AL LF ++Q    K   ++V+ + +L AC HL AL+ G   H Y+  +     + L 
Sbjct: 121 TRDALSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLS 180

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            AL+ MYS+CG ++KA + F G   +NV +W+++I GLAMNG G +++E F  M + G+R
Sbjct: 181 NALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIR 240

Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P++ T   VL  C   G+V+EG    FD M RE+G+ P + HYGC+VDL G AG LD+A 
Sbjct: 241 PDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAX 300

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
            +I  M  KP +  W  LL ACR++ +  +GE     L+EL+ +  G +VLL NIY+ + 
Sbjct: 301 QLIMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAG 360

Query: 307 NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
           +W++V  VR++MK K ++  PGCS IE+   VHEF   D +H R +EI   L EI+ +L+
Sbjct: 361 HWEKVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLR 420

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
           +AGYV   +  ++ ++++EK   L  HSEK+AIAFG+++   G  +R+  NLR+C DC +
Sbjct: 421 IAGYVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCFN 480

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
             K  S V+N ++I+RD NRFHHF+ G CSC  YW
Sbjct: 481 FLKHFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515


>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
          Length = 591

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/428 (42%), Positives = 273/428 (63%), Gaps = 9/428 (2%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQ-------CGKSRE--ALHLFHLMQIHDVKLNEVSMV 93
           R++FD +   D  AWNA+L+ YA+       C  S     L LF  M    ++ NE+++V
Sbjct: 164 RRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLV 223

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           +V+ AC  LGA+  G WAH Y  + RL +   + TALV+MY+ CG ++ A   F    +R
Sbjct: 224 AVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDR 283

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +   + +++ GLA++G G  +L L   M  AGV  + VT +SV+  C   GLV+EG ++F
Sbjct: 284 DTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYF 343

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
           D M  E+GIEP +EHYGC++D+  RAGRL+ A  +I++M + P+A  + +L+ AC ++  
Sbjct: 344 DRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGK 403

Query: 274 TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIE 333
            E+GE    +L+ LE  + G +VL+SN YA +  W+     R+ MK+ G+ K PG S+++
Sbjct: 404 LELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVD 463

Query: 334 VDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKH 393
           ++  +HEF  GD+THP   EI  M+ EI  RL   G  ++T+  ++D+EEE+K DTL  H
Sbjct: 464 INGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYH 523

Query: 394 SEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEG 453
           SE++AIAF LI+   G PIRI+KNLRVC DCH+  K++S+V+ REI++RDR RFHHF++G
Sbjct: 524 SERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDG 583

Query: 454 KCSCKGYW 461
            CSC  +W
Sbjct: 584 VCSCGDFW 591



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 45/227 (19%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           +  TA++   A CG +DLA ++F    +RD   +NAML G A  G  R AL L   M   
Sbjct: 255 IVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGA 314

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT----ALVDMYSKCGN 139
            V ++ V+++SV+ AC H G +D+G     Y +R  ++  +         ++DM S+ G 
Sbjct: 315 GVPVDGVTVLSVMCACAHAGLVDEGLD---YFDRMEIEFGIEPRIEHYGCMIDMLSRAGR 371

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +N A                            EK      L+ +  + PN   + S++R 
Sbjct: 372 LNNA----------------------------EK------LIHEMLIVPNAAIYRSLIRA 397

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV-DLYGRAGRLDEA 245
           C + G +E G +    + R   +EP       L+ + Y R  R ++A
Sbjct: 398 CGIHGKLELGEKMIAELMR---LEPDDSGNHVLISNFYARTNRWEDA 441


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/445 (42%), Positives = 278/445 (62%), Gaps = 4/445 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD+  Q  ++   ++ GD+ LAR +FD MP RD ++W +M+ G        EA++LF  M
Sbjct: 128 PDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERM 187

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDMYSKCG 138
               V++NE +++SVL AC   GAL  GR  H  +E   +++     + TALVDMY+K G
Sbjct: 188 LQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGG 247

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A   F  +  R+V+ WT++I GLA +G  + ++++F  M+ +GV+P+E T  +VL 
Sbjct: 248 CIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLT 307

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL+ EG   F  ++R YG++P ++H+GCLVDL  RAGRL EA D +N MP++P  
Sbjct: 308 ACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDT 367

Query: 259 GAWGALLNACRMYKNTEMGE--LASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
             W  L+ AC+++ + +  E  +   ++ ++   + G+Y+L SN+YA +  W     VR+
Sbjct: 368 VLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRE 427

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  KG+ K PG S IEVD  VHEF  GD  HP   EI V L E+  +++  GY    + 
Sbjct: 428 LMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSE 487

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+ ++++EEK   L  HSEK+A+A+GLI +  G  IRIVKNLR C DCH+  K+ISK++ 
Sbjct: 488 VLLEMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYK 547

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R+IIVRDR RFHHFK G+CSCK YW
Sbjct: 548 RDIIVRDRIRFHHFKNGECSCKDYW 572



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 3/225 (1%)

Query: 30  ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
            +A +  GD++ AR +    P  +   +N +L  ++Q        H   L        + 
Sbjct: 36  FAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPSPPDN 95

Query: 90  VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
            +   +L  C+       G+  H  + +      + +   L+ MYS+ G++  A   F  
Sbjct: 96  FTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDR 155

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M  R+V +WTS+IGGL  +    +++ LF  M Q GV  NE T +SVLR C   G +  G
Sbjct: 156 MPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMG 215

Query: 210 REHFDSMRREYGIEPWLEH--YGCLVDLYGRAGRLDEALDVINKM 252
           R+   ++  E+GIE   +      LVD+Y + G +  A  V + +
Sbjct: 216 RKVHANL-EEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDV 259



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 33/192 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GC+   +KVFD +   DV   TAMIS                             
Sbjct: 242 MYAKGGCIASARKVFDDVVHRDVFVWTAMIS----------------------------- 272

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
             G A  G  ++A+ +F  M+   VK +E ++ +VL+AC + G + +G      ++R   
Sbjct: 273 --GLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYG 330

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178
           +K ++     LVD+ ++ G + +A DF   M  E +   W ++I    ++G  +++  L 
Sbjct: 331 MKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLM 390

Query: 179 SLMKQAGVRPNE 190
             ++   +R ++
Sbjct: 391 KHLEIQDMRADD 402


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/446 (40%), Positives = 282/446 (63%), Gaps = 1/446 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           +G    + +C  +++S   +CG + LA+  FD M E++ + WN M+ G++Q     +AL 
Sbjct: 531 NGFELDEFIC-ISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALD 589

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           +FH M    +  +E+S++  L AC+ + AL  G+  H +  ++ L     +  +L+DMY+
Sbjct: 590 MFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYA 649

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG M ++ + F  +  +   TW  +I G  ++G G K++ELF  M+ AG RP+ VTF++
Sbjct: 650 KCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIA 709

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C   GLV EG E+   M+  +GI+P LEHY C+VD+ GRAGRL+EAL+++N++P K
Sbjct: 710 LLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDK 769

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
           P +  W +LL++CR Y++ ++GE  + KL+EL       YVL+SN YA    WD V  +R
Sbjct: 770 PDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMR 829

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
           Q MK  G++K  GCS IE+  +V  F  GDE+  +  +I+    E+ +++   GY  +T+
Sbjct: 830 QRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTS 889

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V++++EE+EK   L  HSEK+AI+FGL++  +G  +R+ KNLR+C DCH+  K++SK+ 
Sbjct: 890 CVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKID 949

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            REIIVRD  RFHHFK G CSC  YW
Sbjct: 950 KREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 132/252 (52%), Gaps = 4/252 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G  + D +   A ++  AKCG +  A  +F  M  +   +WNA++ G+ Q G  R+AL L
Sbjct: 430 GFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDL 489

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           + LM+   ++ +  ++ S+LSAC  L +L  G+  H  + RN  ++   +  +LV +Y +
Sbjct: 490 YLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQ 549

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG +  A  FF  M+E+N+  W ++I G + N     +L++F  M  + + P+E++ +  
Sbjct: 550 CGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGA 609

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L  C  V  +  G+E H  +++       ++     L+D+Y + G ++++ ++ +++ +K
Sbjct: 610 LGACSQVSALRLGKELHCFAVKSHLTEHSFVT--CSLIDMYAKCGCMEQSQNIFDRVHLK 667

Query: 256 PHAGAWGALLNA 267
                W  L+  
Sbjct: 668 GEV-TWNVLITG 678



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 4/182 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A+I+   K G V+ A K+FD+MP+R+ ++WN+++    + G   E+  LF  + 
Sbjct: 230 DVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLL 289

Query: 82  IHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
             D  L  +  +MV+V+  C   G +  G   H    +  L   + + ++L+DMYSKCG 
Sbjct: 290 NGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGY 349

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLR 198
           + +A   F    E+NV +W S+IGG + +     + EL   M+ +  V+ NEVT ++VL 
Sbjct: 350 LCEARVLF-DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLP 408

Query: 199 GC 200
            C
Sbjct: 409 VC 410



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 4/229 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-H 78
           + DVV  T +++  + C     +  +F+    ++   WNA+L+GY +    R+A+ +F  
Sbjct: 126 QNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVE 185

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           ++ + +   +  ++  V+ AC  +  +  G   H +  + ++   V +G AL+ MY K G
Sbjct: 186 MISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFG 245

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS--LMKQAGVRPNEVTFVSV 196
            +  A+  F  M +RN+ +W SV+     NG  E+S  LF   L    G+ P+  T V+V
Sbjct: 246 FVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTV 305

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           +  C   G V  G   F  +  + G+   L+    L+D+Y + G L EA
Sbjct: 306 IPLCARQGEVRLGMV-FHGLALKLGLCGELKVNSSLLDMYSKCGYLCEA 353



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 95  VLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           +L  C     ++ GR  H +I  +   +  V L T LV MYS C +   +   F   + +
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           N++ W +++ G   N     ++ +F  ++      P+  T   V++ C  V  V  G   
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           H  +++ +   + ++ +   L+ +YG+ G ++ A+ V +KMP + +  +W +++ AC
Sbjct: 219 HGFALKTKVLSDVFVGN--ALIAMYGKFGFVESAVKVFDKMPQR-NLVSWNSVMYAC 272


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 276/445 (62%), Gaps = 4/445 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFH 78
           + D   + A+++   K G+++   ++F  M ER D ++WN+M++GY       +A+ L  
Sbjct: 338 KDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVW 397

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           LM     +L+  +  +VLSAC  +  L+ G   H    R  L+  V +G+ALVDMYSKCG
Sbjct: 398 LMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCG 457

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++ A  FF  M  RN+Y+W S+I G A +G G+ +L LF+ MK +G  P+ +TFV VL 
Sbjct: 458 RIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLS 517

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +GLV+EG E+F SM   YG+ P +EHY C+VDL GRAG LD+  + INKMP+KP+ 
Sbjct: 518 ACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNI 577

Query: 259 GAWGALLNAC--RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
             W  +L AC     + TE+G  A+  L  ++ +N   YVLLSN+YA    W+ +   R+
Sbjct: 578 LIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRR 637

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
            M+   VKK  GCS + +   VH F AGD +HP    I   L E+ ++++ AGYV     
Sbjct: 638 AMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKF 697

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            +YD+E E KE+ L  HSEK+A+AF +++   G+PIRI+KNLRVC DCH   K ISKV +
Sbjct: 698 ALYDLEPENKEELLSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVD 756

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R I++RD NRFHHF++GKCSC+ YW
Sbjct: 757 RSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 134/253 (52%), Gaps = 4/253 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+++  V     +I+  AKCGD+D AR +F  M ++D ++WN+M+ G  Q     +A+  
Sbjct: 132 GLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKS 191

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           ++ M+   +  +  +++S LS+C  LG +  G+  H    +  L M V++   L+ +Y++
Sbjct: 192 YNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAE 251

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG-EKSLELFSLMKQAGVRPNEVTFVS 195
              + +    F  M ER+  +W +VIG LA +GA   +++E+F  M +AG  PN VTF++
Sbjct: 252 TSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFIN 311

Query: 196 VLRGCCVVGLVEEGREH-FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +L    V  L      H   ++  +Y ++        L+  YG++G ++   ++ ++M  
Sbjct: 312 LL--ATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSE 369

Query: 255 KPHAGAWGALLNA 267
           +    +W ++++ 
Sbjct: 370 RRDEVSWNSMISG 382



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 6/251 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+     +I+   + GD   ARK+FDEMP+R+ + W  +++GY Q G   +A  +   
Sbjct: 32  DSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKE 91

Query: 80  MQIHDVKLNEVSMVSVLSACTH-LGALDQGRWAHVYIERNRLK-MTVTLGTALVDMYSKC 137
           M       N  +  S + AC   +    +GR  H Y  R  L    V +G  L++MY+KC
Sbjct: 92  MIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKC 151

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+++ A   F  M +++  +W S+I GL  N   E +++ ++ M++ G+ P+    +S L
Sbjct: 152 GDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISAL 211

Query: 198 RGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
             C  +G +  G++ H + ++   G++  +     L+ LY    RL E   V + M  + 
Sbjct: 212 SSCASLGCILLGQQTHGEGIK--LGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERD 269

Query: 257 HAGAWGALLNA 267
              +W  ++ A
Sbjct: 270 QV-SWNTVIGA 279



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H+ + ++     + L   L+++Y + G+   A   F  M +RN  TW  +I G   NG  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL-VEEGREHFDSMRREYGIEPWLEHYG 230
           E +  +   M   G  PN   F S +R C    L   +GR+      R    +  +    
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            L+++Y + G +D A  V   M  K    +W +++  
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSV-SWNSMITG 178


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 268/447 (59%), Gaps = 11/447 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           DV   T ++ A A+C   + A ++F   E  E D     AM+A YAQC   R    L+  
Sbjct: 363 DVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGA 422

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCG 138
                +  + +  ++ L AC  L AL +GR  H  +  +R L   VTLG A+V MY +CG
Sbjct: 423 AIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCG 482

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A D F GM  R+  +W +++   A +G  E   +LF  M Q G     V F+++L 
Sbjct: 483 SLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLS 542

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVE G EHF +M  ++G+ P  EHYGC+VDL GR GRL +A  ++  MP+ P A
Sbjct: 543 ACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDA 602

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W AL+ ACR+Y +TE G  A+ +++EL   +  AYV L NIY+ +  W+    VR+IM
Sbjct: 603 ATWMALMGACRIYGDTERGRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIM 662

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANT 374
              G++K+PG S IE+  +VHEF   D +HP+    Y E+E ++G I R    AGY A T
Sbjct: 663 ADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIER----AGYRAVT 718

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
             V++D+EEE+KE  L  HSEK+AIAFG++S  +G  +R++KNLRVC DCH+ +K ISKV
Sbjct: 719 GEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKV 778

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
           F REI+VRD  RFHHFK+G CSC  YW
Sbjct: 779 FGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 5/236 (2%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
           +CG ++ A  +F ++  +  + W  +++ Y   G S  A+ LFH +    + L+ +  VS
Sbjct: 74  RCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVS 133

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER- 153
           VLSAC+    L  GR  H       L +   + +ALV MY +CG++  A   F G  ER 
Sbjct: 134 VLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALF-GHLERH 192

Query: 154 -NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-E 211
            +V  W ++I   + NG+  ++LE+F  M Q G+ P+ VTFVSV + C     +   + +
Sbjct: 193 LDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVK 252

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            F +   E G+   +     LV+ Y R G +D A +    MP + +A +W +++ A
Sbjct: 253 GFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPER-NAVSWTSMIAA 307



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 7/256 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  TA+++A A+CG++D AR+ F  MPER+ ++W +M+A +AQ G    A+  FH M 
Sbjct: 266 DVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLL-AVETFHAML 324

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  V     ++ + L  C     L   R      +   +   V + T LV  Y++C    
Sbjct: 325 LEGVVPTRSTLFAALEGCED---LHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQE 381

Query: 142 KAMDFFWGMKER--NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            A+  F   +E   +    T++I   A       + +L+    + G+ P+ + +++ L  
Sbjct: 382 DAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDA 441

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  + EGR+    +  +  ++  +     +V +YG+ G L +A D  + MP +    
Sbjct: 442 CASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEI- 500

Query: 260 AWGALLNACRMYKNTE 275
           +W A+L+A   +   E
Sbjct: 501 SWNAMLSASAQHGRVE 516



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 4/180 (2%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +  +A++S   +CG +  A  +F  +    D + WNAM+   +Q G  REAL +F+ M  
Sbjct: 164 IVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQ 223

Query: 83  HDVKLNEVSMVSVLSACTHLGAL--DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
             +  + V+ VSV  AC+   +L   Q +  H  ++   L   V + TALV+ Y++CG +
Sbjct: 224 LGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEI 283

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A +FF  M ERN  +WTS+I   A  G    ++E F  M   GV P   T  + L GC
Sbjct: 284 DCAREFFAAMPERNAVSWTSMIAAFAQIG-HLLAVETFHAMLLEGVVPTRSTLFAALEGC 342



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L ++LV MY +CG++  A+D F  +  +++  WT +I      G    ++ LF  + Q G
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           +  + + FVSVL  C     +  GR  H  ++    G++  +     LV +YGR G L +
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVA--SALVSMYGRCGSLRD 181

Query: 245 ALDVINKMPMKPHAGAWGALLNA 267
           A  +   +        W A++ A
Sbjct: 182 ANALFGHLERHLDVVLWNAMITA 204


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/446 (44%), Positives = 276/446 (61%), Gaps = 16/446 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV    +++   A C  +D A+ +FD M ER  ++WN ++  + + G+   AL+LF  
Sbjct: 160 DSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGE 219

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ    + +  ++ S+ +AC  +G+L  G           +   V L T+LVDMY KCG+
Sbjct: 220 MQKF-FEPDGYTIQSIANACAGMGSLSLG-----------IVNDVLLNTSLVDMYCKCGS 267

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLR 198
           +  A+  F  M +R+V +W S+I G + +G    +LE F  M +   + PN +TFV VL 
Sbjct: 268 LELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLS 327

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV EGR +FD M  EY I+P LEHYGCLVDL  RAG +DEALDV++ MPM+P  
Sbjct: 328 ACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDL 387

Query: 259 GAWGALLNAC-RMYKNTEMGELASRKLVELETKN-HGAYVLLSNIYAESKNWDRVINVRQ 316
             W +LL+AC +     E+ E  +R+++E E     G YVLLS +YA +  W+ V  VR+
Sbjct: 388 VIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRK 447

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           +M  KGV K PGCS IE+D   HEFFAGD +HP+  EI   L  I  R++  GY  +++ 
Sbjct: 448 LMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQ 507

Query: 377 V-MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
             M D   + K+ +L  HSE++AIAFGL+  K G+PIRI KNLRVC +CH VTK+IS+VF
Sbjct: 508 APMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVF 567

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
           NREIIVRDR RFHHFK+G CSC  YW
Sbjct: 568 NREIIVRDRIRFHHFKDGACSCMDYW 593



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 16/249 (6%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLF 77
           H P+     + I   +   D+  A ++F ++   +   WNA++   A+   + + A+ L+
Sbjct: 56  HHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALY 115

Query: 78  H-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           H +++   V  ++ +   VL AC +L AL +G   H  I +      V +  +LV  Y+ 
Sbjct: 116 HRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYAT 175

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C  ++ A   F  M ER++ +W  VI      G  + +L LF  M Q    P+  T  S+
Sbjct: 176 CDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSI 234

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
              C  +G +              GI   +     LVD+Y + G L+ AL + ++MP K 
Sbjct: 235 ANACAGMGSL------------SLGIVNDVLLNTSLVDMYCKCGSLELALQLFHRMP-KR 281

Query: 257 HAGAWGALL 265
              +W +++
Sbjct: 282 DVTSWNSMI 290



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 89/232 (38%), Gaps = 61/232 (26%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--------- 51
            YA    L + + VFD + E  +V    +I A  + G+ D A  +F EM +         
Sbjct: 172 FYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTI 231

Query: 52  ------------------RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV-------- 85
                              D +   +++  Y +CG    AL LFH M   DV        
Sbjct: 232 QSIANACAGMGSLSLGIVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMIL 291

Query: 86  ----------------------KL--NEVSMVSVLSACTHLGALDQG-RWAHVYIERNRL 120
                                 KL  N ++ V VLSAC H G + +G R+  V +   ++
Sbjct: 292 GFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKI 351

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAG 171
           K  +     LVD+ ++ G +++A+D    M  R ++  W S++       AG
Sbjct: 352 KPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAG 403


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/447 (42%), Positives = 268/447 (59%), Gaps = 11/447 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           DV   T ++ A A+C   + A ++F   E  E D     AM+A YAQC   R    L+  
Sbjct: 363 DVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGA 422

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCG 138
                +  + +  ++ L AC  L AL +GR  H  +  +R L   VTLG A+V MY +CG
Sbjct: 423 AIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCG 482

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A D F GM  R+  +W +++   A +G  E   +LF  M Q G     + F+++L 
Sbjct: 483 SLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLS 542

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+ G EHF +M  ++G+ P  EHYGC+VDL GR GRL +A  ++  MP+ P A
Sbjct: 543 ACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDA 602

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W AL+ ACR+Y +TE G  A+ +++EL   +  AYV L NIY+ +  WD    VR+IM
Sbjct: 603 ATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIM 662

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPR----YNEIEVMLGEISRRLKLAGYVANT 374
              G++K+PG S IE+  +VHEF   D +HP+    Y E+E ++G I R    AGY A T
Sbjct: 663 ADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIER----AGYRAVT 718

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
             V++D+EEE+KE  L  HSEK+AIAFG++S  +G  +R++KNLRVC DCH+ +K ISKV
Sbjct: 719 GEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKV 778

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
           F REI+VRD  RFHHFK+G CSC  YW
Sbjct: 779 FGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 10/248 (4%)

Query: 35  KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94
           +CG ++ A  +F ++  +  + W  +++ Y   G S  A+ LFH +    + L+ +  VS
Sbjct: 74  RCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVS 133

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER- 153
           VLSAC+    L  GR  H       L +   + +ALV MY +CG++  A   F G  ER 
Sbjct: 134 VLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALF-GHLERH 192

Query: 154 -NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-E 211
            +V  W ++I   + NG+  ++LE+F  M Q G+ P+ VTFVSV + C     +   + +
Sbjct: 193 LDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVK 252

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
            F +   E G+   +     LV+ Y R G +D A     +MP + +A +W +++ A    
Sbjct: 253 GFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPER-NAVSWTSMIAA---- 307

Query: 272 KNTEMGEL 279
             T++G L
Sbjct: 308 -FTQIGHL 314



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 7/256 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  TA+++A A+CG++D ARK F EMPER+ ++W +M+A + Q G    A+  FH M 
Sbjct: 266 DVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLL-AVETFHAML 324

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  V     ++ + L  C  L      R      +   +   V + T LV  Y++C    
Sbjct: 325 LEGVVPTRSTLFAALEGCEDLRV---ARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQE 381

Query: 142 KAMDFFWGMKER--NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            A+  F   +E   +    T++I   A       + +L+    + G+ P+ + +++ L  
Sbjct: 382 DAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDA 441

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +  + EGR+    +  +  ++  +     +V +YG+ G L +A D  + MP +    
Sbjct: 442 CASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEI- 500

Query: 260 AWGALLNACRMYKNTE 275
           +W A+L+A   +   E
Sbjct: 501 SWNAMLSASAQHGRVE 516



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +  +A++S   +CG +  A  +F  +    D + WNAM+   +Q G  REAL +F+ M  
Sbjct: 164 IVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQ 223

Query: 83  HDVKLNEVSMVSVLSACTHLGAL--DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
             +  + V+ VSV  AC+   +L   Q +  H  ++   L   V + TALV+ Y++CG +
Sbjct: 224 LGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEI 283

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A  FF  M ERN  +WTS+I      G    ++E F  M   GV P   T  + L GC
Sbjct: 284 DCARKFFAEMPERNAVSWTSMIAAFTQIG-HLLAVETFHAMLLEGVVPTRSTLFAALEGC 342



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L ++LV MY +CG++  A+D F  +  +++  WT +I      G    ++ LF  + Q G
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
           +  + + FVSVL  C     +  GR  H  ++    G++  +     LV +YGR G L +
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVA--SALVSMYGRCGSLRD 181

Query: 245 ALDVINKMPMKPHAGAWGALLNA 267
           A  +   +        W A++ A
Sbjct: 182 ANALFGHLERHLDVVLWNAMITA 204


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 278/423 (65%), Gaps = 2/423 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           HE DV   +A++   A+CG +D+A  +FD++  ++ ++WNA+++G+A+ G    AL +F 
Sbjct: 184 HE-DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFA 242

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ +  +    +  S+ SA   +GAL+QG+W H ++ ++R K+T  +G  ++DMY+K G
Sbjct: 243 EMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSG 302

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           +M  A   F  +  +++ TW S++   A  G G++++  F  M+++G+  N+++F+ +L 
Sbjct: 303 SMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILT 362

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG+ +FD M +EY +EP +EHY  +VDL GRAG L+ AL  I KMPM+P A
Sbjct: 363 ACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTA 421

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL ACRM+KN ++G+ A+  + +L+  + G  VLL NIYA + +WD    VR++M
Sbjct: 422 AVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMM 481

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           KA GVKK P CS +E++  VH F A D+THPR  EI  M  EIS +++  GYV + + V+
Sbjct: 482 KATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVL 541

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             ++E+E+E  L  HSEK+A+AF LI +  G  IRI+KN+R+C DCH   K ISKVF RE
Sbjct: 542 LHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFERE 601

Query: 439 IIV 441
           I++
Sbjct: 602 IVI 604



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 4/251 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     ++I    KCG V  A K+FD+M  +D ++W +++AGYAQ     EA+ L   M 
Sbjct: 85  DAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGML 144

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               K N  +  S+L A         G   H    +      V +G+AL+DMY++CG M+
Sbjct: 145 KGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMD 204

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  +N  +W ++I G A  G GE +L +F+ M++ G      T+ S+     
Sbjct: 205 MATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALA 264

Query: 202 VVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +G +E+G+  H   ++    +  ++ +   ++D+Y ++G + +A  V  ++ +      
Sbjct: 265 GIGALEQGKWVHAHMIKSRQKLTAFVGN--TMLDMYAKSGSMIDARKVFERV-LNKDLVT 321

Query: 261 WGALLNACRMY 271
           W ++L A   Y
Sbjct: 322 WNSMLTAFAQY 332



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 14/215 (6%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           + ++AC     LD  R  H ++  +R      L  +L+ +Y KCG++ +A   F  M+ +
Sbjct: 56  AFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNK 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE----G 209
           ++ +WTS+I G A N    +++ L   M +   +PN  TF S+L+    VG   +    G
Sbjct: 116 DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA---VGAYADSGIGG 172

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
           + H  +++ ++  + ++     L+D+Y R G++D A  V +K+  K +  +W AL++   
Sbjct: 173 QIHALAVKCDWHEDVYVG--SALLDMYARCGKMDMATAVFDKLDSK-NGVSWNALISG-- 227

Query: 270 MYKNTEMGELASRKLVELETKNHGA-YVLLSNIYA 303
            +     GE A     E++     A +   S+I++
Sbjct: 228 -FARKGDGETALMVFAEMQRNGFEATHFTYSSIFS 261



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVF+ +   D+V   +M++A                            
Sbjct: 297 MYAKSGSMIDARKVFERVLNKDLVTWNSMLTA---------------------------- 328

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
              +AQ G  +EA+  F  M+   + LN++S + +L+AC+H G + +G+     I+   L
Sbjct: 329 ---FAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNL 385

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           +  +     +VD+  + G +N A+ F + M  E     W +++    M+
Sbjct: 386 EPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/444 (42%), Positives = 272/444 (61%), Gaps = 2/444 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D      +I   + CG    A K+F +M +RD ++W +M+ G+    ++ EA+ LF  
Sbjct: 128 ESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEE 187

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M    V+ NE ++VSVL AC   GA+  GR     IE  ++ +   + TAL+DMY+KCG+
Sbjct: 188 MVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGS 247

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F G+  ++V+ WT++I GLA +G  E+++ LF  M+  G+RP+E T  +VL  
Sbjct: 248 IGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSA 307

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G   EG  +F+SM  +YGI+P ++HYGC+VDL  R G LDEA + I KMP++P   
Sbjct: 308 CRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVV 367

Query: 260 AWGALLNACRMYKNTEMGE--LASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
            W  L+ A +++ + +  E  +  R L+++++ + G+YVLL N+YA +  W     +R++
Sbjct: 368 LWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMREL 427

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M  KG+ K PGCS IEVD  VHEF AGD  H    +I   L E+  RLK  GY    + V
Sbjct: 428 MNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEV 487

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           + +I+ +EK   L  HSEK+A+AFGLI    G  IRIVKNLR C DCH V K+ISK++ +
Sbjct: 488 LLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQ 547

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           +IIVRDR RFHHF  G CSCK YW
Sbjct: 548 DIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 12/259 (4%)

Query: 18  IHEPDVVCQTAMIS------ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +  PD   QT  ++      A +  GD+  A  + + +  ++    N M+  Y+Q     
Sbjct: 17  LKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPT 76

Query: 72  EALHLFHLM--QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           +ALHLF  M  Q    + ++ +   +L +C  L     G+  H  I ++ L+    +   
Sbjct: 77  QALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNG 136

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ MYS CG   +A   F  M++R+V +WTS+I G   +    +++ LF  M + GV PN
Sbjct: 137 LIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPN 196

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           E T VSVLR C   G V  GR     +  R+ G+E  +     L+D+Y + G +  A  V
Sbjct: 197 EATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVR--TALIDMYAKCGSIGSARKV 254

Query: 249 INKMPMKPHAGAWGALLNA 267
            + +  K    AW A+++ 
Sbjct: 255 FDGIVNK-DVFAWTAMISG 272



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 36/188 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +G  +KVFDGI   DV   TAMIS                             
Sbjct: 241 MYAKCGSIGSARKVFDGIVNKDVFAWTAMIS----------------------------- 271

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
             G A  G   EA+ LF  M+   ++ +E +M +VLSAC + G   +G  + +    +  
Sbjct: 272 --GLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYG 329

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178
           +K T+     +VD+ ++ G++++A +F   M  E +V  W ++I    ++G  ++S +  
Sbjct: 330 IKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQ-- 387

Query: 179 SLMKQAGV 186
            LMK  G+
Sbjct: 388 -LMKDRGL 394


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/461 (37%), Positives = 279/461 (60%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G +    K+FD +   DVV    ++S   + G +D A ++F EMP +  ++W  M
Sbjct: 344 LYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVM 403

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY   G + +AL LF+ M+  DVK  + +    ++AC  LGAL  G+  H ++ +   
Sbjct: 404 VSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGF 463

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           + + + G AL+ MY++CG +  A   F  M   +  +W ++I  L  +G G ++LELF  
Sbjct: 464 EASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQ 523

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   G+ P+ ++F+++L  C   GLV++G ++F+SM R++GI P  +HY  L+DL GRAG
Sbjct: 524 MVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAG 583

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           R+ EA D+I  MP +P    W A+L+ CR+  + E+G  A+ +L ++  ++ G Y+LLSN
Sbjct: 584 RIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSN 643

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            Y+ +  W     VR++M+ +GVKK PGCS IEV  +VH F  GD  HP  +E+   L  
Sbjct: 644 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEM 703

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  +++  GYV +T   + D+   EKE  L  HSE++A++FGL+ L  G  + ++KNL++
Sbjct: 704 VGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKI 763

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH     +S+   REI+VRD  RFHHFK+G+CSC  YW
Sbjct: 764 CGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 126/292 (43%), Gaps = 37/292 (12%)

Query: 11  CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
            +KV D + E D +  T ++    + GDV  AR  F+E+     + WNAM++GY Q G  
Sbjct: 218 ARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMC 277

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM----TVTL 126
            EA  LF  M    +  +E +  S+LSAC + G    G+  H    R +        + +
Sbjct: 278 AEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPV 337

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV------------------------- 161
             ALV +YSK G +  A   F  M  ++V +W ++                         
Sbjct: 338 NNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSE 397

Query: 162 ------IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
                 + G    G  E +L+LF+ M+   V+P + T+   +  C  +G ++ G++   +
Sbjct: 398 LSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQ-LHA 456

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              + G E        L+ +Y R G + +A  V   MP    + +W A+++A
Sbjct: 457 HLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMP-NVDSVSWNAMISA 507



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 147/349 (42%), Gaps = 47/349 (13%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLF 77
           +P  V  T+++SA A  G +  +   FD +P   RD +  NAM++ +A+   +  A+ +F
Sbjct: 86  DPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVF 145

Query: 78  HLMQIHDVKL--NEVSMVSVLSAC--THLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             +   D  L  ++ S  S+LSA    H  A+      H  + +      +++  AL+ +
Sbjct: 146 RSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIAL 205

Query: 134 YSKC---GNMNKAMDFFWGMKERNVYTWTSV----------------------------- 161
           Y KC   G    A      M E++  TWT++                             
Sbjct: 206 YMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWN 265

Query: 162 --IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE---HFDSM 216
             I G   +G   ++ ELF  M    + P+E TF S+L  C   G    G+     F  +
Sbjct: 266 AMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRL 325

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
           + ++  E  L     LV LY ++G++  A  + + M +K    +W  +L+    Y  +  
Sbjct: 326 QPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK-DVVSWNTILSG---YIESGC 381

Query: 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            + A+R   E+  K+  +++++ + Y      +  + +   M+++ VK 
Sbjct: 382 LDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKP 430


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 275/441 (62%), Gaps = 6/441 (1%)

Query: 27  TAMISACAKC-GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHD 84
           + +I   +KC G +   RK+F+E+   D + WN M++G++Q    S + +  F  MQ + 
Sbjct: 282 SGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNG 341

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYSKCGNMNKA 143
              ++ S V V SAC++L +   G+  H    ++ +    V++  ALV MYSKCGN++ A
Sbjct: 342 FHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDA 401

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M E N+ +  S+I G A +G   +SL LF LM Q  + PN +TF++VL  C   
Sbjct: 402 RRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHT 461

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G VEEG+++F+ M+  + IEP  EHY C++DL GRAG+L EA  +I  MP  P +  W  
Sbjct: 462 GKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWAT 521

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR + N E+   A+ + ++LE  N   YV+LSN+YA +  W+    V+++M+ +GV
Sbjct: 522 LLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGV 581

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY---D 380
           KK PGCS IE+D++VH F A D +HP   EI V +GEI R++K AGYV +    +    +
Sbjct: 582 KKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEE 641

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +E +EKE  L  HSEK+A+AFGLIS +E VPI +VKNLR+C DCH+  K+IS +  REI 
Sbjct: 642 VEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREIT 701

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD +RFH FKEG CSC  YW
Sbjct: 702 VRDTHRFHCFKEGHCSCGDYW 722



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 134/280 (47%), Gaps = 14/280 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G L   Q  FD    P+V     +I+A AK   + LAR++FDE+P+ D +++N +
Sbjct: 53  LYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTL 112

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG--RWAHVYIERN 118
           +A YA  G+ R AL LF  ++     L+  ++  V+ AC      D G  R  H ++   
Sbjct: 113 IAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGD----DVGLVRQLHCFVVVC 168

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175
                 ++  A++  YS+ G +N+A   F  M E   R+  +W ++I     +  G +++
Sbjct: 169 GYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAV 228

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           ELF  M + G++ +  T  SVL    CV  LV  G   F  M  + G          L+D
Sbjct: 229 ELFREMVRRGLKVDMFTMASVLTAFTCVKDLV--GGMQFHGMMIKSGFHGNSHVGSGLID 286

Query: 235 LYGR-AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
           LY + AG + E   V  ++   P    W  +++    Y++
Sbjct: 287 LYSKCAGGMVECRKVFEEIA-APDLVLWNTMISGFSQYED 325



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 92/161 (57%), Gaps = 12/161 (7%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V    A+++  +KCG+V  AR++FD MPE + ++ N+M+AGYAQ G   E+L LF LM  
Sbjct: 382 VSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQ 441

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            D+  N ++ ++VLSAC H G +++G ++ ++  ER R++      + ++D+  + G + 
Sbjct: 442 KDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLK 501

Query: 142 KA------MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           +A      M F  G  E     W +++G    +G  E +++
Sbjct: 502 EAERIIETMPFNPGSIE-----WATLLGACRKHGNVELAVK 537


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/441 (39%), Positives = 278/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++ Q A+++   + G +D AR+ F+ +  +D ++W +M+      G   EAL LF+ ++
Sbjct: 483 DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             +++ + ++++S LSA  +L +L +G+  H ++ R    +   + ++LVDMY+ CG + 
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  +K+R++  WTS+I    M+G G K++ LF  M    V P+ +TF+++L  C 
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL+ EG+  F+ M+  Y +EPW EHY C+VDL  R+  L+EA   +  MP+KP +  W
Sbjct: 663 HSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIW 722

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL AC ++ N E+GELA+++L++ +T+N G Y L+SNI+A    W+ V  VR  MK  
Sbjct: 723 CALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGN 782

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL-KLAGYVANTNPVMYD 380
           G+KK PGCS IEVD ++H F A D++HP+ ++I + L + ++ L K  GY+A T  V ++
Sbjct: 783 GLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHN 842

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           + EEEK   L  HSE++A+ +GL+   +G  IRI KNLR+C DCH   K+ S+V  R ++
Sbjct: 843 VSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLV 902

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD NRFHHF+ G CSC  +W
Sbjct: 903 VRDANRFHHFERGLCSCGDFW 923



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 138/268 (51%), Gaps = 6/268 (2%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           + +LG +G    V    H  DV    A+I+  AKCG ++ A ++F+ M  RD ++WN +L
Sbjct: 263 FVKLG-MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLL 321

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           +G  Q     +AL+ F  MQ    K ++VS++++++A    G L +G+  H Y  RN L 
Sbjct: 322 SGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLD 381

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
             + +G  LVDMY+KC  +      F  M E+++ +WT++I G A N    +++ LF  +
Sbjct: 382 SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKV 441

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           +  G+  + +   SVLR C  +      RE H    +R+   +  L++   +V++YG  G
Sbjct: 442 QVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQN--AIVNVYGEVG 498

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNAC 268
            +D A      +  K    +W +++  C
Sbjct: 499 HIDYARRAFESIRSKDIV-SWTSMITCC 525



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++    KCG +  A K+FDEM ER   +WNA++  +   GK  EA+ L+  M++  V 
Sbjct: 83  TKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVA 142

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           ++  +  SVL AC  LG    G   H    +      V +  AL+ MY KCG++  A   
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVL 202

Query: 147 FWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
           F G  M++ +  +W S+I      G   ++L LF  M++ GV  N  TFV+ L+G     
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262

Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
            V+ G   H   ++  +  + ++ +   L+ +Y + GR+++A  V   M  + +  +W  
Sbjct: 263 FVKLGMGIHGAVLKSNHFADVYVAN--ALIAMYAKCGRMEDAGRVFESMLCRDYV-SWNT 319

Query: 264 LLNA 267
           LL+ 
Sbjct: 320 LLSG 323



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 14/233 (6%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDE--MPERDPIAWNAMLAGYAQ 66
           GY + VF        VC  A+I+   KCGD+  AR +FD   M + D ++WN++++ +  
Sbjct: 175 GYGEFVF--------VCN-ALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVA 225

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL 126
            G   EAL LF  MQ   V  N  + V+ L        +  G   H  + ++     V +
Sbjct: 226 EGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYV 285

Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
             AL+ MY+KCG M  A   F  M  R+  +W +++ GL  N     +L  F  M+ +G 
Sbjct: 286 ANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ 345

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
           +P++V+ ++++      G + +G+E H  ++R   G++  ++    LVD+Y +
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRN--GLDSNMQIGNTLVDMYAK 396



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 134/272 (49%), Gaps = 36/272 (13%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+  C+ Y    F+ +HE D+                               I+W  +
Sbjct: 393 MYAKCCCVKYMGHAFECMHEKDL-------------------------------ISWTTI 421

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ     EA++LF  +Q+  + ++ + + SVL AC+ L + +  R  H Y+ +  L
Sbjct: 422 IAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL 481

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + L  A+V++Y + G+++ A   F  ++ +++ +WTS+I     NG   ++LELF  
Sbjct: 482 A-DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYS 540

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           +KQ  ++P+ +  +S L     +  +++G+E H   +R+ + +E  +     LVD+Y   
Sbjct: 541 LKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA--SSLVDMYACC 598

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ +  + + +  +     W +++NA  M+
Sbjct: 599 GTVENSRKMFHSVKQRDLI-LWTSMINANGMH 629



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 15/232 (6%)

Query: 41  LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN---EVSMVSVLS 97
           ++  +   +P + PI+ N +       G  + A     L+  H +      E +   +L 
Sbjct: 1   MSTSILTPLPLK-PISVNTL-----NKGTLKPAFQSLTLLSTHPLATPSRLEHAHSLLLD 54

Query: 98  ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
            C    AL QG+  H  + ++ L  +  L T LV MY KCG++  A+  F  M ER +++
Sbjct: 55  LCVAAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFS 112

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSM 216
           W +++G    +G   +++EL+  M+  GV  +  TF SVL+ C  +G    G E H  ++
Sbjct: 113 WNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAV 172

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM-KPHAGAWGALLNA 267
           +  YG   ++     L+ +YG+ G L  A  + + + M K    +W ++++A
Sbjct: 173 KCGYG--EFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/483 (40%), Positives = 290/483 (60%), Gaps = 32/483 (6%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERD----PIAWNAMLAGYA 65
           +C+ + +GI  P+ +  ++M+ ACA  GD D  R++     + +     +  NA+++ YA
Sbjct: 348 FCKMLNEGI-RPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYA 406

Query: 66  QCGKSREALHLFHLM------------------------QIHDVKL--NEVSMVSVLSAC 99
           + G   EA H F  +                        QI  ++L  +  +  S++SA 
Sbjct: 407 ESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAA 466

Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
             +G L +G+  H    +        +G +LV MYS+CG +  A   F  M + NV +WT
Sbjct: 467 ASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWT 526

Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           S+I GLA +G   ++LELF  M  AGV+PN+VT+++VL  C   GLV+EG+EHF  M++ 
Sbjct: 527 SMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKH 586

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGEL 279
           +G+ P +EHY C+VDL GR+G +++ALD IN+MP +  A  W  LL AC+ + N ++GE+
Sbjct: 587 HGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEI 646

Query: 280 ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVH 339
           A+  +++LE ++   YVLLSN+YAE+  WD+V  +R +M+ K + K  G S + VD  +H
Sbjct: 647 AANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIH 706

Query: 340 EFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAI 399
           EF AGD +HP+  EI   L  + R +K+ GYV +T+ V++D+ +E KE  L +HSEK+A+
Sbjct: 707 EFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAV 766

Query: 400 AFGLISLKEGV-PIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCK 458
           AFGLIS      PIRI KNLRVC DCH   K +SK   REII+RD NRFH  K+G+CSC 
Sbjct: 767 AFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCG 826

Query: 459 GYW 461
            YW
Sbjct: 827 EYW 829



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 7/241 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G    DV    A+I   AK GD+   R++FD + ER  + W  ++  YAQ G S EA+ L
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M  +  + ++ ++ S+LSACT LG+   G+  H    R  L+    +   LVDMY+K
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 137 CGN---MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS-LELFSLMKQAGVRPNEVT 192
             N   ++ A + F  M + NV  WT+++ G    G+ +   + LF  M   G+RPN +T
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHIT 362

Query: 193 FVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           + S+L+ C  +G  + GR+ H   ++        + +   LV +Y  +G ++EA    ++
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGN--ALVSMYAESGSIEEARHAFDQ 420

Query: 252 M 252
           +
Sbjct: 421 L 421



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 127/254 (50%), Gaps = 9/254 (3%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLF 77
           E D V   ++++  +KC  V  AR +FD MP   RD ++W AM +  ++ G   EAL LF
Sbjct: 81  ETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLF 140

Query: 78  HLMQIHDVKLNEVSMVSVLSAC--THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
                  +  N  ++ +   AC  + L  L  G    +  +       V++G AL+DM++
Sbjct: 141 GETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFA 200

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           K G++      F G+ ER V  WT +I   A +G  ++++ELF  M + G +P++ T  S
Sbjct: 201 KNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSS 260

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA---GRLDEALDVINKM 252
           +L  C  +G    G++   S+    G+E        LVD+Y ++     L  A +V N+M
Sbjct: 261 MLSACTELGSFRLGQQ-LHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRM 319

Query: 253 PMKPHAGAWGALLN 266
           P K +  AW ALL+
Sbjct: 320 P-KHNVMAWTALLS 332



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 21/235 (8%)

Query: 32  ACAKCGDVDL------------ARKMFDEMPERDPIAWNAMLAGYAQCG-KSREALHLFH 78
           +C  CG VD+            AR++F+ MP+ + +AW A+L+GY Q G +  + + LF 
Sbjct: 290 SCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFC 349

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    ++ N ++  S+L AC +LG  D GR  H +  ++ L     +G ALV MY++ G
Sbjct: 350 KMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESG 409

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++ +A   F  + E+N+ +++       ++G G  +      +++  +  +  TF S++ 
Sbjct: 410 SIEEARHAFDQLYEKNMVSFSG-----NLDGDGRSNTYQDYQIERMELGISTFTFGSLIS 464

Query: 199 GCCVVGLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
               VG++ +G R H  S++  +G +  + +   LV +Y R G L +A  V ++M
Sbjct: 465 AAASVGMLTKGQRLHALSLKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEM 517



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 41/257 (15%)

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTW 158
           HLG   QG   H+    + L+    +  +L+ +YSKC  +  A   F GM    R++ +W
Sbjct: 64  HLGRALQG---HLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSW 120

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC-----------CVVGLVE 207
           T++   L+ NGA  ++L LF    + G+ PN  T  +  + C            V+GLV 
Sbjct: 121 TAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF 180

Query: 208 E----------GREHFD---------SMRREYG--IEPWLEHYGCLVDLYGRAGRLDEAL 246
           +          G    D         +MRR +    E  +  +  L+  Y ++G  DEA+
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAV 240

Query: 247 DVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL-LSNIY 302
           ++   M     +P      ++L+AC    +  +G+      + L  ++       L ++Y
Sbjct: 241 ELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMY 300

Query: 303 AESKNWDRVINVRQIMK 319
           A+S N   + N R++  
Sbjct: 301 AKSHNGQSLHNAREVFN 317



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 33/166 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  G L    +VFD +++ +V+  T+MIS  AK                         
Sbjct: 500 MYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAK------------------------- 534

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
             GYA       AL LFH M    VK N+V+ ++VLSAC+H G + +G+     ++++  
Sbjct: 535 -HGYAA-----RALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHG 588

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           L   +     +VD+  + G +  A+DF   M  + +   W +++G 
Sbjct: 589 LIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGA 634


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/368 (48%), Positives = 255/368 (69%), Gaps = 3/368 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + GCL   + VF+ +   +V+C T M+S  A CG+++ AR++F+  P RD + W AM
Sbjct: 282 MYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAM 341

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY Q  +  EA+ LF  MQI  VK ++  +VS+L+ C   GA++QG+W H +I+ NR+
Sbjct: 342 INGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI 401

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            +   +GTAL++MY+KCG + KA++ F+G++ ++  +WTS+I GLAMNG   K+LELFS 
Sbjct: 402 PIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSK 461

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           MKQAGVRP+++TF+ VL  C   GLVEEGR+ F+SMR EY I+P +EHYGCLVDL GRAG
Sbjct: 462 MKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAG 521

Query: 241 RLDEALDVINKMPMKPHA---GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
            L+EA ++I K+P +  A     +G+LL+ACR+Y N EMGE  +++LV+ E+ +   + L
Sbjct: 522 LLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTL 581

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+NIYA +  W+ V  VR+ MK  GVKK PGCS IEVD  +HEFF+G  +HP   EI  M
Sbjct: 582 LANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREIYYM 641

Query: 358 LGEISRRL 365
           L  +++ L
Sbjct: 642 LNIMAKPL 649



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 155/300 (51%), Gaps = 44/300 (14%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D   + ++I   A+    D+ + +FDEMP+RD I+WN M++GY +C +  +A+++F  
Sbjct: 169 EFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCR 228

Query: 80  MQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           MQ    +  +E ++VS LSACT L  L+ G+  H Y+ R+ +K T  +G AL+DMY KCG
Sbjct: 229 MQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYV-RDNVKFTPIIGNALLDMYCKCG 287

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-------------------- 178
            ++ A   F  M  +NV  WT+++ G A  G  E++ ELF                    
Sbjct: 288 CLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQ 347

Query: 179 --------SLMKQAGVR---PNEVTFVSVLRGCCVVGLVEEGR---EHFDSMRREYGIEP 224
                   +L ++  +R   P++   VS+L GC   G +E+G+   E  D  R      P
Sbjct: 348 FNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI-----P 402

Query: 225 WLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY-KNTEMGELASR 282
                G  L+++Y + G +++AL++   + +K  A +W +++    M  K ++  EL S+
Sbjct: 403 IDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTA-SWTSIICGLAMNGKTSKALELFSK 461



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 157/341 (46%), Gaps = 25/341 (7%)

Query: 17  GIHEPDVVCQTAMISACAKC--GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74
           G+H+ D+V    +++ C     G+++ A KMF  +     + +N ++  +A+ G  +  L
Sbjct: 64  GLHQ-DIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTL 122

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
            LF  ++   +  +  +   V  A  +LG + +       + +  L+    +  +L+DMY
Sbjct: 123 VLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMY 182

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTF 193
           ++    +     F  M +R+V +W  +I G       E ++ +F  M+ ++G+ P+E T 
Sbjct: 183 AQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATV 242

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           VS L  C  +  +E G++    +R      P + +   L+D+Y + G L  A  V  +MP
Sbjct: 243 VSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--ALLDMYCKCGCLSIARAVFEEMP 300

Query: 254 MKPHAGAWGALLNACRMYKNTEMGEL-ASRKLVE-LETKNHGAYVLLSNIYAESKNWDRV 311
            K +   W  +++    Y N   GEL  +R+L E    ++   +  + N Y +   +D  
Sbjct: 301 SK-NVICWTTMVSG---YANC--GELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEA 354

Query: 312 INVRQIMKAKGVKK--------LPGCS---VIEVDREVHEF 341
           + + + M+ + VK         L GC+    IE  + +HEF
Sbjct: 355 VALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEF 395


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/443 (41%), Positives = 278/443 (62%), Gaps = 1/443 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV   ++++   AKCGD+  AR +FDEMP R+ ++W+ M+ GY Q G+  EA+ LF 
Sbjct: 186 YDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFK 245

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
              +  + +N+ ++ SV+  C     L+ G+  H    +    ++  +G++L+ +YSKCG
Sbjct: 246 EALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCG 305

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  A   F  +  +N+  W +++   A +   +++ +LF+ M+ AG+RPN +TF+ VL 
Sbjct: 306 LIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLY 365

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVEEG+++F  M++ Y IEP  +HY  +VDL GRAG+L EAL VI  MP +P  
Sbjct: 366 ACSHAGLVEEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTE 424

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGA +  CR++ NT++   A+ K+ EL   + G +V+LSN YA +  ++     R+++
Sbjct: 425 SVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKML 484

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +GVKK  G S IE    VH+F AGD  H R  EI   L ++   ++ AGYVA+T+ V+
Sbjct: 485 RDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVL 544

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            ++  EEK  T+  HSE++AIAFGLIS+  G PIRI+KNLRVC DCH+  K ISK+  R 
Sbjct: 545 REVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRV 604

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFH F++GKCSC  YW
Sbjct: 605 IIVRDNNRFHRFEDGKCSCADYW 627



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 125/236 (52%), Gaps = 4/236 (1%)

Query: 41  LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100
           L+ ++F+E   +    W+++++ +AQ  +   A+  F  M   ++  ++    S   AC 
Sbjct: 107 LSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACA 166

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
            LG  D G+  H  + +    + V +G++LVDMY+KCG++ +A + F  M  RNV +W+ 
Sbjct: 167 ILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSG 226

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRRE 219
           +I G    G  E+++ LF      G+  N+ T  SV+R C    L+E G++ H    +  
Sbjct: 227 MIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTS 286

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           Y +  ++     L+ LY + G ++ A  V +++P+K + G W A+L AC  + +T+
Sbjct: 287 YDLSGFVG--SSLISLYSKCGLIEGAYRVFDEVPIK-NLGMWNAMLIACAQHAHTK 339



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 9/185 (4%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L + T   +L +G+  H +I ++ L++   +   L++ YSK      +   F   + ++
Sbjct: 60  LLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKS 119

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HF 213
             TW+SVI   A N     +++ F  M    + P++  F S  + C ++G  + G+  H 
Sbjct: 120 STTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHC 179

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
             ++  Y ++ ++     LVD+Y + G + EA +V ++MP + +  +W  ++     Y  
Sbjct: 180 LVIKTGYDVDVFVG--SSLVDMYAKCGDIKEARNVFDEMPHR-NVVSWSGMI-----YGY 231

Query: 274 TEMGE 278
           T++GE
Sbjct: 232 TQLGE 236


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/463 (41%), Positives = 284/463 (61%), Gaps = 3/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+   L   + VFD I   + +  TAM+S  AK G  + A ++F  +P ++  +W A+
Sbjct: 86  MYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTAL 145

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G+ Q GK  EA  +F  M+   V  L+ + + S++ AC +L A   GR  H  +    
Sbjct: 146 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALG 205

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               V +  AL+DMY+KC ++  A D F  M+ R+V +WTS+I G+A +G  EK+L L+ 
Sbjct: 206 FDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 265

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   GV+PNEVTFV ++  C  VG V +GRE F SM ++YGI P L+HY CL+DL GR+
Sbjct: 266 EMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 325

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
           G LDEA ++I+ MP  P    W ALL+AC+     +MG  +A   +   + K+   Y+LL
Sbjct: 326 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILL 385

Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
           SNIYA +  W +V   R+ +    V+K PG S +EV +E   F+AG+ +H    +I  +L
Sbjct: 386 SNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGETSHALKEDIFRLL 445

Query: 359 GEISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
            ++   +++  GYV +T+ +++D++E+EKE  L  HSE+ A+A+GL+    G PIRIVKN
Sbjct: 446 KKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKN 505

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           LRVC DCH V K IS++  REIIVRD  R+HHFK GKCSC  +
Sbjct: 506 LRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 548



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 5/172 (2%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREAL-HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107
           MP RD IAW ++L    Q   S + L     +     ++ ++    +++ AC +LG++  
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
           G+  H +   +       + ++LVDMY+KC  ++ A   F  ++ +N  +WT+++ G A 
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
           +G  E++LELF  +       N  ++ +++ G    G   E    F  MRRE
Sbjct: 121 SGRKEEALELFRRLPVK----NLYSWTALISGFVQSGKGLEAFSVFTEMRRE 168


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/444 (42%), Positives = 286/444 (64%), Gaps = 3/444 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H P V   TA++++ +K G+ + A  +F  +  +D +AW+AML+ Y+Q G    A ++F 
Sbjct: 433 HAPSV--GTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFI 490

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
            M +  +K NE ++ S + AC    A +DQGR  H    + R +  + +G+ALV MY++ 
Sbjct: 491 KMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARK 550

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G+++ A   F    +R++ +W S+I G A +G  +++L+ F  M+  G+  +  TF++V+
Sbjct: 551 GSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVI 610

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
            GC   GLV+EG+++FDSM  ++ I P +EHY C+VDLY RAG+LDE +++I  MP    
Sbjct: 611 VGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAG 670

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
           A  W  LL ACR++KN E+G+LA++KL+ LE  +   YVLLSNIYA +  W     VR++
Sbjct: 671 AMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKL 730

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           M +K VKK  GCS I++  +VH F A D++HP   +I   L  ++ RLK  GY  NT+ V
Sbjct: 731 MDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVV 790

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++DI EE+KE  L  HSE++A+AFGLI+     P++IVKNLRVC DCH V KM+S + +R
Sbjct: 791 LHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDR 850

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EII+RD +RFHHF  G CSC  +W
Sbjct: 851 EIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 133/259 (51%), Gaps = 1/259 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  V  G    +V   TA++    KCG V+  R +F+ MP+R+ + W ++L GY Q   
Sbjct: 122 HCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRA 181

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             + + LF  M+   V  N  +  SVLSA    GA+D GR  H    +   + TV +  +
Sbjct: 182 CSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNS 241

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L++MYSKCG + +A   F  M+ R++ +W +++ GL +N    ++L+LF   + +  + +
Sbjct: 242 LINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLS 301

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           + T+ +V++ C  +  +   R+   S   ++G          ++D Y + G LD+A ++ 
Sbjct: 302 QSTYSTVIKLCANLKQLALARQ-LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIF 360

Query: 250 NKMPMKPHAGAWGALLNAC 268
             MP   +  +W A++  C
Sbjct: 361 LLMPGSQNVVSWTAMIGGC 379



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 113/241 (46%), Gaps = 13/241 (5%)

Query: 33  CAKCGDVDLARKMFDEMPERDPIAWNA----MLAGYAQCGKSR-EALHLFHLMQIHDVKL 87
           CA   +   AR+  D MP RD  A ++     +  Y + GK R EAL   H + +H    
Sbjct: 39  CADTCNAPGARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALD--HFVDVHRCGR 96

Query: 88  NEVSMVS-VLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTALVDMYSKCGNMNKAMD 145
            + + VS VL  C  +     G   H    +    +  V +GTALVDMY KCG +     
Sbjct: 97  VQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRV 156

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F GM +RNV TWTS++ G     A    + LF  M+  GV PN  TF SVL      G 
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGA 216

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           V+ GR  H  S++  +G    +     L+++Y + G ++EA  V  +M  +    +W  L
Sbjct: 217 VDLGRRVHAQSVK--FGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMV-SWNTL 273

Query: 265 L 265
           +
Sbjct: 274 M 274



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALH 75
           G H  D    TA++ A +KCG++D A  +F  MP  ++ ++W AM+ G  Q      A  
Sbjct: 332 GFHS-DGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAA 390

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           LF  M+  +VK NE +  +VL+A   +  L Q    H  I +   +   ++GTAL+  YS
Sbjct: 391 LFSRMREDNVKPNEFTYSTVLTASIPI-LLPQ---IHAQIIKTNYQHAPSVGTALLASYS 446

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           K GN  +A+  F  +  ++V  W++++   +  G  + +  +F  M   G++PNE T  S
Sbjct: 447 KLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISS 506

Query: 196 VLRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            +  C      +++GR+ F ++  +Y  +  +     LV +Y R G +D A  V  +
Sbjct: 507 AIDACASPTAGIDQGRQ-FHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFER 562


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 277/446 (62%), Gaps = 1/446 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            G+H  D+    +++S  AK G +D A  +FDEM  +D ++++A+++GY Q G++ EA  
Sbjct: 254 SGVHA-DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 312

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           +F  MQ  +V+ +  +MVS++ AC+HL AL  GR +H  +    L    ++  AL+DMY+
Sbjct: 313 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 372

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG ++ +   F  M  R++ +W ++I G  ++G G+++  LF  M   G  P+ VTF+ 
Sbjct: 373 KCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFIC 432

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C   GLV EG+  F  M   YG+ P +EHY C+VDL  R G LDEA + I  MP++
Sbjct: 433 LLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 492

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
                W ALL ACR+YKN ++G+  SR + EL  +  G +VLLSNIY+ +  +D    VR
Sbjct: 493 ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVR 552

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
            I K +G KK PGCS IE++  +H F  GD++HP+  EI   L  I   +K  GY  +T+
Sbjct: 553 IIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTS 612

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V+ D+EEEEKE  L  HSEK+AIA+G++SL E   I + KNLRVC DCH V K IS V 
Sbjct: 613 FVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVK 672

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            R IIVRD NRFHHFK G+CSC  +W
Sbjct: 673 RRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 14/249 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL-HLFH 78
           + D+   TA++    KC  +  A  +F  MP RD +AWNAMLAGYA  G    A+ HL  
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 101

Query: 79  L-MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER----------NRLKMTVTLG 127
           + MQ+H ++ N  ++V++L      GAL QG   H Y  R          ++L   V LG
Sbjct: 102 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 161

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV- 186
           TAL+DMY+KCG++  A   F  M  RN  TW+++IGG  +     ++  LF  M   G+ 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
             +  +  S LR C  +  +  G E   ++  + G+   L     L+ +Y +AG +D+A+
Sbjct: 222 FLSPTSIASALRACASLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 247 DVINKMPMK 255
            + ++M +K
Sbjct: 281 ALFDEMAVK 289



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 9/246 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            K+ DG     V+  TA++   AKCG +  AR++FD MP R+ + W+A++ G+  C +  
Sbjct: 152 SKLTDG-----VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMT 206

Query: 72  EALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           +A  LF  M    +  L+  S+ S L AC  L  L  G   H  + ++ +   +T G +L
Sbjct: 207 QAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 266

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + MY+K G +++A+  F  M  ++  ++++++ G   NG  E++  +F  M+   V P+ 
Sbjct: 267 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 326

Query: 191 VTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            T VS++  C  +  ++ GR  H   + R  G+         L+D+Y + GR+D +  V 
Sbjct: 327 ATMVSLIPACSHLAALQHGRCSHGSVIIR--GLASETSICNALIDMYAKCGRIDLSRQVF 384

Query: 250 NKMPMK 255
           N MP +
Sbjct: 385 NMMPSR 390



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 12/194 (6%)

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
           H V  N  +    L AC+ L     GR  H +     L+  + + TAL+DMY KC  +  
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL-ELFSL-MKQAGVRPNEVTFVSVLRGC 200
           A   F  M  R++  W +++ G A +G    ++  L S+ M+   +RPN  T V++L   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 201 CVVGLVEEGRE-HFDSMR--------REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
              G + +G   H   +R         +  +   +     L+D+Y + G L  A  V + 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 252 MPMKPHAGAWGALL 265
           MP +     W AL+
Sbjct: 184 MPARNEV-TWSALI 196


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 277/446 (62%), Gaps = 1/446 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            G+H  D+    +++S  AK G +D A  +FDEM  +D ++++A+++GY Q G++ EA  
Sbjct: 369 SGVHA-DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 427

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           +F  MQ  +V+ +  +MVS++ AC+HL AL  GR +H  +    L    ++  AL+DMY+
Sbjct: 428 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 487

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG ++ +   F  M  R++ +W ++I G  ++G G+++  LF  M   G  P+ VTF+ 
Sbjct: 488 KCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFIC 547

Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +L  C   GLV EG+  F  M   YG+ P +EHY C+VDL  R G LDEA + I  MP++
Sbjct: 548 LLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 607

Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315
                W ALL ACR+YKN ++G+  SR + EL  +  G +VLLSNIY+ +  +D    VR
Sbjct: 608 ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVR 667

Query: 316 QIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN 375
            I K +G KK PGCS IE++  +H F  GD++HP+  EI   L  I   +K  GY  +T+
Sbjct: 668 IIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTS 727

Query: 376 PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVF 435
            V+ D+EEEEKE  L  HSEK+AIA+G++SL E   I + KNLRVC DCH V K IS V 
Sbjct: 728 FVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVK 787

Query: 436 NREIIVRDRNRFHHFKEGKCSCKGYW 461
            R IIVRD NRFHHFK G+CSC  +W
Sbjct: 788 RRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 14/249 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL-HLFH 78
           + D+   TA++    KC  +  A  +F  MP RD +AWNAMLAGYA  G    A+ HL  
Sbjct: 157 QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 216

Query: 79  L-MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER----------NRLKMTVTLG 127
           + MQ+H ++ N  ++V++L      GAL QG   H Y  R          ++L   V LG
Sbjct: 217 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 276

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV- 186
           TAL+DMY+KCG++  A   F  M  RN  TW+++IGG  +     ++  LF  M   G+ 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
             +  +  S LR C  +  +  G E   ++  + G+   L     L+ +Y +AG +D+A+
Sbjct: 337 FLSPTSIASALRACASLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 247 DVINKMPMK 255
            + ++M +K
Sbjct: 396 ALFDEMAVK 404



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 9/246 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
            K+ DG     V+  TA++   AKCG +  AR++FD MP R+ + W+A++ G+  C +  
Sbjct: 267 SKLTDG-----VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMT 321

Query: 72  EALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
           +A  LF  M    +  L+  S+ S L AC  L  L  G   H  + ++ +   +T G +L
Sbjct: 322 QAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 381

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + MY+K G +++A+  F  M  ++  ++++++ G   NG  E++  +F  M+   V P+ 
Sbjct: 382 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 441

Query: 191 VTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
            T VS++  C  +  ++ GR  H   + R    E  +     L+D+Y + GR+D +  V 
Sbjct: 442 ATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI--CNALIDMYAKCGRIDLSRQVF 499

Query: 250 NKMPMK 255
           N MP +
Sbjct: 500 NMMPSR 505



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 14/242 (5%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA--LHLFHLMQIHDVKLNEVSMVS 94
           G +  A  +FD++P  D   +N ++  Y+    +  A  LHL+  M  H V  N  +   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
            L AC+ L     GR  H +     L+  + + TAL+DMY KC  +  A   F  M  R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 155 VYTWTSVIGGLAMNGAGEKSL-ELFSL-MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           +  W +++ G A +G    ++  L S+ M+   +RPN  T V++L      G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 212 HFDSMR--------REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           H   +R         +  +   +     L+D+Y + G L  A  V + MP +     W A
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV-TWSA 309

Query: 264 LL 265
           L+
Sbjct: 310 LI 311


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/450 (39%), Positives = 277/450 (61%), Gaps = 1/450 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V     +PD V   A++   ++ G  D A ++FD MP R+ ++WN+++AG  +     E
Sbjct: 203 QVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFE 262

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           A+  F +MQ   +  + V++ ++L  C  + AL  G+  H  I ++  K    +  +LVD
Sbjct: 263 AIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVD 322

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY+KCG M+     F GM+ +++ +W ++I G A+NG   +++E F  M  +G  P+ +T
Sbjct: 323 MYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGIT 382

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           F+++L GC   GL ++G   F+ M+ +YGI P +EHY CLVD+ GRAGR+ EAL+++  M
Sbjct: 383 FIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNM 442

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P KP    WG+LLN+CR++ N  + E  +++L ELE  N G YV+LSNIYA +  W+ V 
Sbjct: 443 PFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVK 502

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN-EIEVMLGEISRRLKLAGYV 371
            VR+ M+ +G+ K  GCS +++  ++H F AG     R + E + +   +   ++  GYV
Sbjct: 503 VVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYV 562

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +T  V++D+ EE +   +C HSE++A  F LI+   G+PIRI KNLRVC DCH   K +
Sbjct: 563 PDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTL 622

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           SKV  R I++RD NRFHHFK+G CSCK YW
Sbjct: 623 SKVTGRVIVLRDTNRFHHFKDGVCSCKDYW 652



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 11/245 (4%)

Query: 29  MISACAKCGDVDLARKMFDE------MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           +I+  + C  VD AR++F++      +PE     W AM  GY++ G  +EAL L++ M  
Sbjct: 115 LITLFSVCRRVDEARRVFEDGGEDVDLPES---VWVAMGIGYSRNGYPKEALLLYYEMVC 171

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
              +L   +    L AC+ LG L  GR  H  + +        +  AL+ +YS+ G  ++
Sbjct: 172 QFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDE 231

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A+  F GM  RNV +W S+I GL       +++E F +M+  G+  + VT  ++L  C  
Sbjct: 232 ALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCAR 291

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
           V  +  G+E    + +    +P       LVD+Y + G +D    V N M  K    +W 
Sbjct: 292 VTALGSGKEIHAVIVKSTA-KPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGK-DLTSWN 349

Query: 263 ALLNA 267
            L+  
Sbjct: 350 TLITG 354



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 33/171 (19%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G + YC++VF+G+   D+                                +WN +
Sbjct: 323 MYAKCGAMDYCRRVFNGMQGKDLT-------------------------------SWNTL 351

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
           + GYA  G+  EA+  F  M       + ++ +++LS C+H G  D G R   +      
Sbjct: 352 ITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYG 411

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT-WTSVIGGLAMNG 169
           +  TV     LVD+  + G + +A++    M  +   + W S++    ++G
Sbjct: 412 ISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHG 462


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/456 (41%), Positives = 285/456 (62%), Gaps = 10/456 (2%)

Query: 9   GYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           G+C K  FD     +V   +A++    + G +D A+ +FD +  R+ ++WNA++AG+A+ 
Sbjct: 176 GFCVKCGFDS----NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARR 231

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
             + +AL LF  M     + +  S  S+  AC+  G L+QG+W H Y+ ++  K+    G
Sbjct: 232 CGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG 291

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
             L+DMY+K G+++ A   F  + +R+V +W S++   A +G G +++  F  M++ G+R
Sbjct: 292 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIR 351

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI--EPWLEHYGCLVDLYGRAGRLDEA 245
           PNE++F+SVL  C   GL++EG  +++ M+++ GI  E W  HY  +VDL GRAG L+ A
Sbjct: 352 PNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAW--HYVTIVDLLGRAGDLNRA 408

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
           L  I +MP++P A  W ALLNACRM+KNTE+G  A+  + EL+  + G +V+L NIYA  
Sbjct: 409 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 468

Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
             W+    VR+ MK  GVKK P CS +E++  +H F A DE HP+  EI     E+  ++
Sbjct: 469 GRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKI 528

Query: 366 KLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
           K  GYV +T+ V+  ++++E+E  L  HSEK+A+AF L++   G  I I KN+RVC DCH
Sbjct: 529 KELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCH 588

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
              K+ SK   REIIVRD NRFHHFK+G CSCK YW
Sbjct: 589 SAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 134/255 (52%), Gaps = 4/255 (1%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +   I   D+V    +++  AKCG ++ ARK+FD+MPERD + W  +++GY+Q  +  +A
Sbjct: 77  LIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDA 136

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L LF+ M       NE ++ SV+ A         G   H +  +      V +G+AL+D+
Sbjct: 137 LVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 196

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           Y++ G M+ A   F  ++ RN  +W ++I G A     EK+LELF  M + G RP+  ++
Sbjct: 197 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSY 256

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKM 252
            S+   C   G +E+G+     M +    E  +   G  L+D+Y ++G + +A  + +++
Sbjct: 257 ASLFGACSSTGFLEQGKWVHAYMIKSG--EKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 314

Query: 253 PMKPHAGAWGALLNA 267
             K    +W +LL A
Sbjct: 315 A-KRDVVSWNSLLTA 328



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 17/213 (7%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++L  CT    L QGR  H ++ ++  +  + +   L++MY+KCG++ +A   F  M ER
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL-------RGCCVVGLV 206
           +  TWT++I G + +     +L LF+ M + G  PNE T  SV+       RGCC     
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCC----- 170

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
                       + G +  +     L+DLY R G +D+A  V + +  +    +W AL+ 
Sbjct: 171 ---GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-SWNALIA 226

Query: 267 ACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
                  TE   EL    L E    +H +Y  L
Sbjct: 227 GHARRCGTEKALELFQGMLREGFRPSHFSYASL 259


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/449 (40%), Positives = 271/449 (60%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V+   +  D+     +++  A+CG  + A  +F E+  +D I WN +++G+ Q     +
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQ 531

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL +F  M     K N  + +S +SA  +L  + QG+  H    +        +  AL+ 
Sbjct: 532 ALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALIS 591

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           +Y KCG++  A   F  M  RN  +W ++I   + +G G ++L+LF  MKQ G++PN+VT
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           F+ VL  C  VGLVEEG  +F SM   YG+ P  +HY C+VD+ GRAG+LD A   +++M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P+  +A  W  LL+AC+++KN E+GELA++ L+ELE  +  +YVLLSN YA +  W    
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR++MK +G++K PG S IEV   VH FF GD  HP  ++I   L E++ RL   GY  
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQ 831

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
               + ++ E+E+K+ T   HSEK+A+AFGL++L   +P+R++KNLRVC DCH   K  S
Sbjct: 832 ENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTS 891

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +V  REI++RD  RFHHF  G CSC  YW
Sbjct: 892 EVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 134/265 (50%), Gaps = 11/265 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++A++    +C + F G          A+I+     G   LA ++F +M   D + +N +
Sbjct: 166 IHAQVYKQAFCSETFVG---------NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTL 216

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G+AQCG    AL +F  MQ+  ++ + V++ S+L+AC  +G L +G+  H Y+ +  +
Sbjct: 217 ISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGM 276

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                   +L+D+Y KCG++  A D F      NV  W  ++          KS E+F  
Sbjct: 277 SFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQ 336

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  G+ PN+ T+  +LR C   G +E G E   S+  + G E  +   G L+D+Y +  
Sbjct: 337 MQATGIHPNKFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYR 395

Query: 241 RLDEALDVINKMPMKPHAGAWGALL 265
            LD+A  ++ +M  K    +W +++
Sbjct: 396 CLDKARKIL-EMLEKRDVVSWTSMI 419



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I   AK G V  AR++F E+  RD ++W AML+GYAQ G  +EA  L+  M    V   
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
              + SVLSACT      QGR  H  + +        +G AL+ +Y   G+   A   F 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M   +  T+ ++I G A  G GE +L++F  M+ +G+RP+ VT  S+L  C  VG +++
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           G++   S   + G+       G L+DLY + G ++ A D+ N
Sbjct: 264 GKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 129/253 (50%), Gaps = 4/253 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+     +I   +K   +D ARK+ + + +RD ++W +M+AGY Q     EAL  F  
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   V  + + + S  SAC  + A+ QG   H  +  +     +++   LV++Y++CG 
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGR 497

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             +A   F  +  ++  TW  +I G   +   E++L +F  M QAG + N  TF+S +  
Sbjct: 498 SEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISA 557

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +  +++G++ H  +++  +  E   E    L+ LYG+ G +++A  + ++M ++   
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSET--EVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 259 GAWGALLNACRMY 271
            +W  ++ +C  +
Sbjct: 616 -SWNTIITSCSQH 627



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 5/283 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D + + +++    KCGD++ A  +F+     + + WN ML  Y Q     ++  +F  MQ
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  N+ +   +L  CT  G ++ G   H    +N  +  + +   L+DMYSK   ++
Sbjct: 339 ATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLD 398

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA      +++R+V +WTS+I G   +   E++L  F  M+  GV P+ +   S    C 
Sbjct: 399 KARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACA 458

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  + +G + H       Y  +  +  +  LV+LY R GR +EA  +  ++  K     
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAAD--ISIWNTLVNLYARCGRSEEAFSLFREIDHKDEI-T 515

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           W  L++     +  E   +   K+ +   K +  +  +S I A
Sbjct: 516 WNGLISGFGQSRLYEQALMVFMKMSQAGAK-YNVFTFISAISA 557



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWA-----HVYIERNRLKMTVTLGTALVDMYSKC 137
           H   L    +   L AC   G     RW      H       L     +G  L+D+Y+K 
Sbjct: 36  HHRALGSADLTCALQACRGRG----NRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKN 91

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G + +A   F  +  R+  +W +++ G A  G G+++  L+S M    V P      SVL
Sbjct: 92  GLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVL 151

Query: 198 RGCCVVGLVEEGR 210
             C    L  +GR
Sbjct: 152 SACTKGKLFAQGR 164


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/440 (40%), Positives = 283/440 (64%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   ++++   A+   +  A+ +F+ +  ++ ++WNA++AG+A+ G+    + LF  M 
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQML 299

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +    +  SV +AC   G+L+QG+W H ++ ++  +    +G  L+DMY+K G++ 
Sbjct: 300 RQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIK 359

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + ++++ +W S+I G A +G G ++L+LF  M +A V+PNE+TF+SVL  C 
Sbjct: 360 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 419

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL++EG+ +F+ M++ + IE  + H+  +VDL GRAGRL+EA   I +MP+KP A  W
Sbjct: 420 HSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVW 478

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL +CRM+KN ++G  A+ ++ EL+  + G +VLLSNIYA +        VR++MK  
Sbjct: 479 GALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKES 538

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK P CS +E++ EVH F A D++HP   EI+ M  +IS ++K  GYV +T+ V++ +
Sbjct: 539 GVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFM 598

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            ++++E  L  HSEK+A+AF ++    G+ IRI KN+R+C DCH   K  S+V  REIIV
Sbjct: 599 NQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIV 658

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF  G CSC+ YW
Sbjct: 659 RDTNRFHHFLHGMCSCRDYW 678



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 135/248 (54%), Gaps = 4/248 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+V    +++  AKCG ++ A+ +FD+MP +D ++W  +++GY+Q G++ EAL LF  
Sbjct: 137 EDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPK 196

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M     + NE ++ S+L A     +   GR  H +  +    M V +G++L+DMY++  +
Sbjct: 197 MLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAH 256

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M +A   F  +  +NV +W ++I G A  G GE  + LF  M + G  P   T+ SV   
Sbjct: 257 MREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTA 316

Query: 200 CCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C   G +E+G+  H   ++   G +P       L+D+Y ++G + +A  V  ++ +K   
Sbjct: 317 CASSGSLEQGKWVHAHVIKS--GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDI 373

Query: 259 GAWGALLN 266
            +W ++++
Sbjct: 374 VSWNSIIS 381



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L+ CT+L  L QGR  H +I+ +  +  + L   +++MY+KCG++ +A D F  M  ++
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKD 170

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +WT +I G + +G   ++L LF  M   G +PNE T  S+L+          GR+   
Sbjct: 171 MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ-LH 229

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +   +YG +  +     L+D+Y R   + EA  + N +  K +  +W AL+
Sbjct: 230 AFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNALI 279



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVF  + + D+V   ++IS                             
Sbjct: 351 MYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS----------------------------- 381

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             GYAQ G   EAL LF  M    V+ NE++ +SVL+AC+H G LD+G++    ++++++
Sbjct: 382 --GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKI 439

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           +  V     +VD+  + G +N+A  F   M  +     W +++G   M+
Sbjct: 440 EAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMH 488


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/442 (44%), Positives = 286/442 (64%), Gaps = 8/442 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    ++++   KCG+V+LARK+FDEM  RD I WNAM++GYAQ G +R  L ++  M+
Sbjct: 195 DLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMK 254

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  V  + V+++ V+SAC +LGA   GR     IER        L  ALV+MY++CGN+ 
Sbjct: 255 LSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLT 314

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A + F    E++V +WT++IGG  ++G GE +LELF  M ++ VRP++  FVSVL  C 
Sbjct: 315 RAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACS 374

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL + G E+F  M R+YG++P  EHY C+VDL GRAGRL+EA+++I  M +KP    W
Sbjct: 375 HAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVW 434

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL AC+++KN E+ ELA + +VELE  N G YVLLSNIY ++ N + V  VR +M+ +
Sbjct: 435 GALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRER 494

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
            ++K PG S +E   +++ F++GD +HP+  +I  ML E      L   V   +P     
Sbjct: 495 KLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDE------LESLVKEVHPPNEKC 548

Query: 382 EEEEKEDTLCK--HSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           +   +E  +    HSEK+AIAF L++ K G  I ++KNLRVC DCH   K++SK+ NR+ 
Sbjct: 549 QGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQF 608

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD  RFHHF++G CSCK YW
Sbjct: 609 IVRDATRFHHFRDGICSCKDYW 630



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 11/240 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +PD   ++++I+  AKC     ARK+FDEMP    I +NAM++GY+   K   A+ LF  
Sbjct: 86  QPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLHAVCLFRK 144

Query: 80  MQIH-------DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           M+         DV +N V+++S++S C+    L  G   H    R      + +  +LV 
Sbjct: 145 MRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVT 204

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MY KCG +  A   F  M  R++ TW ++I G A NG     LE++S MK +GV  + VT
Sbjct: 205 MYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVT 264

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRRE-YGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
            + V+  C  +G    GRE    + R  +G  P+L +   LV++Y R G L  A +V ++
Sbjct: 265 LLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARCGNLTRAREVFDR 322



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 11/237 (4%)

Query: 38  DVDLARKMFDEMPERDPI-AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
             D  R+     P  +P  AWN  L   ++  + REAL L+  M       N  +   +L
Sbjct: 2   SADQLRESAAAPPRWNPTTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLL 61

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            +C  L         H ++ R   +      ++L++ Y+KC   + A   F  M    + 
Sbjct: 62  KSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTI- 120

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQ-------AGVRPNEVTFVSVLRGCCVVGLVEEG 209
            + ++I G + N     ++ LF  M++         V  N VT +S++ GC V   +  G
Sbjct: 121 CYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIG 180

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
                   R +G    L     LV +Y + G ++ A  V ++M ++     W A+++
Sbjct: 181 VCLHGCCVR-FGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLI-TWNAMIS 235



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 33/174 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA  G L   ++VFD   E  VV  TA+I      G  ++A ++FDEM E         
Sbjct: 306 MYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVES-------- 357

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
                                   V+ ++   VSVLSAC+H G  D+G      +ER   
Sbjct: 358 -----------------------AVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYG 394

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGE 172
           L+      + +VD+  + G + +A++    MK + +   W +++G   ++   E
Sbjct: 395 LQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAE 448


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/441 (41%), Positives = 275/441 (62%), Gaps = 6/441 (1%)

Query: 27  TAMISACAKCG-DVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHD 84
           + +I   AKCG  +  +RK+F+E+   D + WN M++GY+Q  + S EAL  F  MQ   
Sbjct: 280 SGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAG 339

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYSKCGNMNKA 143
              ++ S V  +SAC++L +  QG+  H    ++ +    +++  ALV MYSKCGN+  A
Sbjct: 340 YWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDA 399

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M + N  T  S+I G A +G G +SL LF  M  A + P  +T VS+L  C   
Sbjct: 400 RKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHT 459

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G VEEG+++F+ M+  +GIEP  EHY C++DL GRAG+L EA  +I+ MP  P + AW A
Sbjct: 460 GRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAA 519

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR Y N E+ E A+ + ++LE  N   Y++L+++Y+ ++ W+    +R++M+ +G+
Sbjct: 520 LLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGI 579

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTN-PVMYDIE 382
           +K PGCS IE+++ VH F A D +HPR  EI + L E+  ++K AGYV +     + D E
Sbjct: 580 RKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDE 639

Query: 383 --EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
             E+EKE  L  HSEK+A+AFGL+  K G P+ +VKNLR+C DCH+  K +S +  R+I 
Sbjct: 640 TGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKIT 699

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD  RFH F++G+CSC  YW
Sbjct: 700 VRDAYRFHCFEDGRCSCGDYW 720



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++   L      F+  HEP+V    A+I+A AK   + +A  +FD++P+ D +++N +
Sbjct: 52  LYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTL 111

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNR 119
           +  YA  G +  AL LF  M+   + ++  +   V++A C H+G +   R  H     + 
Sbjct: 112 INAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLI---RQLHSLAFSSG 168

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLEL 177
               V++  +L+  YSK G + +A   F GM E  R+  +W S+I     +  G K+L L
Sbjct: 169 FDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALAL 228

Query: 178 FSLMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDL 235
           +  M   G   +  T  SVL    CV  L    + H  +++  +       H G  L+D+
Sbjct: 229 YRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKN---RHVGSGLIDM 285

Query: 236 YGRAG 240
           Y + G
Sbjct: 286 YAKCG 290


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/443 (43%), Positives = 274/443 (61%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    +M+    KC     AR +FD M  R+ ++W +M+A YAQ G   EA   +  
Sbjct: 252 EMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLG 311

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            +    +  +  + S L+ C  L  L  GR  H    R+ +   + + +ALVDMY KCG 
Sbjct: 312 ARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGC 371

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLR 198
           +  A   F+   +RN+ TW ++IGG A  G  + +L +F  M ++G   PN +T V+V+ 
Sbjct: 372 VEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVIT 431

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL ++G E F++MR  +GIEP  EHY C+VDL GRAG  ++A +VI  MPM+P  
Sbjct: 432 SCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSI 491

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL AC+M+  TE+G +A+ KL EL+ ++ G +VLLSN++A +  W    ++R+ M
Sbjct: 492 SVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEM 551

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K  G+KK PGCS +     VH F A D  H  YNEI+ +L ++ ++++ AGY+ +T   +
Sbjct: 552 KNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSL 611

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           YD+EEEEKE  + +HSEK+A+AFGLI +  GVPIRI+KNLR+C DCH   K IS +  RE
Sbjct: 612 YDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGRE 671

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHFK+ +CSC  YW
Sbjct: 672 IIVRDNNRFHHFKQYQCSCGDYW 694



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 6/247 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P V C  A +    K G + LAR +F EMP R+ +AWNA++      G+  E +  +  
Sbjct: 153 DPFVSC--AALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFG 210

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++      N VS  +  +AC     L  G   H ++ +   +M V++  ++VD Y KC  
Sbjct: 211 LREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRC 270

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             KA   F GM  RN  +W S++   A NGA E++   +   +++G  P +    S L  
Sbjct: 271 AGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTT 330

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  +  GR  H  ++R    I+  +     LVD+YG+ G +++A  +  + P + + 
Sbjct: 331 CAGLLGLHLGRALHAVAVRS--CIDANIFVASALVDMYGKCGCVEDAEQIFYETPQR-NL 387

Query: 259 GAWGALL 265
             W A++
Sbjct: 388 VTWNAMI 394



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 2/138 (1%)

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV++YSK      A           V ++T+ I G A +G    +L  F+ M + G+RPN
Sbjct: 57  LVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPN 116

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDV 248
           + TF S  +                S+   +G  P      C  +D+Y + GRL  A  +
Sbjct: 117 DFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHL 176

Query: 249 INKMPMKPHAGAWGALLN 266
             +MP + +  AW A++ 
Sbjct: 177 FGEMPNR-NVVAWNAVMT 193


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/464 (42%), Positives = 288/464 (62%), Gaps = 3/464 (0%)

Query: 1   MYAELGCLGYCQKVFD--GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           MY+  G +   +++ +  G  +  +   TA++    K GD++ A+ +F  + +RD +AW 
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+ GY Q G   EA++LF  M     + N  ++ ++LS  + L +L  G+  H    ++
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLEL 177
               +V++  AL+ MY+K GN+  A   F  ++ ER+  +WTS+I  LA +G  E++LEL
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M   G+RP+ +T+V V   C   GLV +GR++FD M+    I P L HY C+VDL+G
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG L EA + I KMP++P    WG+LL+ACR++KN ++G++A+ +L+ LE +N GAY  
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSA 622

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           L+N+Y+    W+    +R+ MK   VKK  G S IEV  +VH F   D THP  NEI + 
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMT 682

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           + +I   +K  GYV +T  V++D+EEE KE  L  HSEK+AIAFGLIS  +   +RI+KN
Sbjct: 683 MKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKN 742

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LRVC DCH   K ISK+  REIIVRD  RFHHFK+G CSC+ YW
Sbjct: 743 LRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 167/358 (46%), Gaps = 43/358 (12%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G   + +K+FD +          ++SA +K GD+D   + FD++P+RD ++W  M
Sbjct: 58  VYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTM 117

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + GY   G+  +A+ +   M    ++  + ++ +VL++      ++ G+  H +I +  L
Sbjct: 118 IVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGL 177

Query: 121 KMTVTLGTALVDMYSKCGN-------------------------------MNKAMDFFWG 149
           +  V++  +L++MY+KCG+                               M+ AM  F  
Sbjct: 178 RGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQ 237

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
           M ER++ TW S+I G    G   ++L++FS +++ + + P+  T  SVL  C  +  +  
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP-HAGAWGALLN 266
           G++ H   +   + I   +     L+ +Y R G ++ A  +I +   K      + ALL+
Sbjct: 298 GKQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLD 355

Query: 267 ACRMYKNTEMGELASRK--LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
                   ++G++   K   V L+ ++  A+  +   Y +  ++   IN+ + M   G
Sbjct: 356 GY-----IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 121/292 (41%), Gaps = 43/292 (14%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYA 65
           + + + D +  PD     +++SACA    + + +++   +     +   I  NA+++ Y+
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           +CG    A  L       D+K+                                      
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGF----------------------------------- 350

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
             TAL+D Y K G+MN+A + F  +K+R+V  WT++I G   +G+  +++ LF  M   G
Sbjct: 351 --TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
            RPN  T  ++L     +  +  G++   S  +   I   +     L+ +Y +AG +  A
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSA 467

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYV 296
               + +  +    +W +++ A   + + E   EL    L+E    +H  YV
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYV 519


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/436 (41%), Positives = 270/436 (61%), Gaps = 1/436 (0%)

Query: 26   QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
              A++   AKCG ++ A  +F ++P +D ++WN M+ GY++     EAL LF  MQ  + 
Sbjct: 793  SNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQ-KES 851

Query: 86   KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
            + + ++M  +L AC  L AL+ GR  H  I RN     + +  AL+DMY KCG++  A  
Sbjct: 852  RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARL 911

Query: 146  FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
             F  + E+++ TWT +I G  M+G G +++  F  M+ AG++P+E+TF S+L  C   GL
Sbjct: 912  LFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGL 971

Query: 206  VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            + EG   F+SM  E  +EP LEHY C+VDL  R G L +A ++I  MP+KP A  WGALL
Sbjct: 972  LNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALL 1031

Query: 266  NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
              CR++ + E+ E  +  + ELE  N G YVLL+NIYAE++ W+ V  +R+ +  +G+KK
Sbjct: 1032 CGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKK 1091

Query: 326  LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
             PGCS IEV  +   F + D  HP+   I  +L  +  ++K  G+       + +  + E
Sbjct: 1092 SPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDME 1151

Query: 386  KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
            KE  LC HSEK+A+AFG+++L  G  IR+ KNLRVC DCH++ K +SK   REII+RD N
Sbjct: 1152 KEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSN 1211

Query: 446  RFHHFKEGKCSCKGYW 461
            RFHHFK+G CSC+ +W
Sbjct: 1212 RFHHFKDGFCSCRDFW 1227



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 141/258 (54%), Gaps = 5/258 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDV----VCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           +A LG +G C+++   +++           ++I+   K G+VD A K+FDE+ +RD ++W
Sbjct: 563 FATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSW 622

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M++G    G S  AL  F  M I  V ++  ++V+ ++AC ++G+L  GR  H    +
Sbjct: 623 NSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVK 682

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                 V     L+DMYSKCGN+N A+  F  M ++ V +WTS+I      G  + ++ L
Sbjct: 683 ACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRL 742

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M+  GV P+  +  SVL  C     +++GR+  + +R+   +   L     L+D+Y 
Sbjct: 743 FYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKN-NMALCLPVSNALMDMYA 801

Query: 238 RAGRLDEALDVINKMPMK 255
           + G ++EA  V +++P+K
Sbjct: 802 KCGSMEEAYLVFSQIPVK 819



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 8/258 (3%)

Query: 35  KCGDVDLARKMFDEMPERDPI-AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
            CG +   R++FD +   + +  WN M++ YA+ G  RE+++LF  MQ   +  N  +  
Sbjct: 498 SCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFS 557

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            +L     LG + + +  H  + +       T+  +L+  Y K G ++ A   F  + +R
Sbjct: 558 CILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDR 617

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
           +V +W S+I G  MNG    +LE F  M    V  +  T V+ +  C  VG +  GR  H
Sbjct: 618 DVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALH 677

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
              ++  +  E    +   L+D+Y + G L++A+    KM  K    +W +L+ A   Y 
Sbjct: 678 GQGVKACFSREVMFNN--TLLDMYSKCGNLNDAIQAFEKMGQKTVV-SWTSLIAA---YV 731

Query: 273 NTEMGELASRKLVELETK 290
              + + A R   E+E+K
Sbjct: 732 REGLYDDAIRLFYEMESK 749


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/442 (41%), Positives = 279/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E + V  T++++   +C  +  AR +F+ +P +D I WNA++  YAQ G  +EAL +F  
Sbjct: 8   EAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQR 67

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   VK    + +SVL AC    AL  GR  H  +  N L   + + TALV+MY+KCG 
Sbjct: 68  MQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGK 127

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A + F  M+  +V  WT+++ G A +G  E+S +L   M+  G++PN VTF+S++  
Sbjct: 128 LVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLVFA 187

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G ++E R+ F +M  ++G  P  EH+ C++DL GR GRL+EA +VI+ MP +P   
Sbjct: 188 CSHSGYLDEARDCFIAMA-DHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLT 246

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
           AW  +L+ACR+ K+    E+A+ K  E+E     AY+L+SN+YA  + WD V  VR++M+
Sbjct: 247 AWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVRRLME 306

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            +GVKK PG S IEV   +HEF A +++HP+ + I   L +++  +K AGYV +T+ V++
Sbjct: 307 RRGVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDTSLVLH 366

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           +++EE K+ TL  HSE++A+ +GLI+   G  + +V NLR+C DCH   K IS + NREI
Sbjct: 367 NVDEETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYISTISNREI 426

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           +VRD NRFH F  G CSCK YW
Sbjct: 427 VVRDANRFHTFATGGCSCKDYW 448



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 3/189 (1%)

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           +E+  L+    +GT+LV+MY +C ++  A   F  +  ++  TW +++   A +G G+++
Sbjct: 2   VEKVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEA 61

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           LE+F  M+Q GV+    TF+SVL  C     +  GR    ++    G++  L     LV+
Sbjct: 62  LEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVAN-GLDRELIVATALVN 120

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           +Y + G+L EA +V ++M       AW A++     + + E  +   R++ ELE      
Sbjct: 121 MYAKCGKLVEAREVFDQME-GMDVVAWTAIVAGSAQHGHIEESKDLMRRM-ELEGIKPNN 178

Query: 295 YVLLSNIYA 303
              LS ++A
Sbjct: 179 VTFLSLVFA 187


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/436 (39%), Positives = 272/436 (62%), Gaps = 1/436 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++   AKC  +  A +MF+ MPE++ + W++M+AGY Q G   EAL +F   Q+    
Sbjct: 183 TALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFD 242

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +   + S +SAC  L  L +G+  H    ++     + + ++L+DMY+KCG + +A   
Sbjct: 243 QDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLV 302

Query: 147 FWGMKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
           F G+ E R++  W ++I G A +    +++ LF  M+Q G  P++VT+V VL  C  +GL
Sbjct: 303 FQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGL 362

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            EEG+++FD M R++ + P + HY C++D+ GRAG + +A D+I +MP    +  WG+LL
Sbjct: 363 HEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLL 422

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            +C++Y N E  E+A++ L E+E  N G ++LL+NIYA +K WD V   R++++   V+K
Sbjct: 423 ASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRK 482

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
             G S IE+  ++H F  G+  HP+ ++I   L  +   LK   Y  +T+  ++D+EE  
Sbjct: 483 ERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENR 542

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           K+  L  HSEK+AI FGL+ L   +PIRI+KNLR+C DCH   K++SK  +REIIVRD N
Sbjct: 543 KQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTN 602

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFK+G CSC  +W
Sbjct: 603 RFHHFKDGFCSCGEFW 618



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 3/248 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D++    +I+  +KC  VD ARK F+EMP +  ++WN ++    Q  + REAL L   
Sbjct: 75  EMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQ 134

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ      NE ++ SVL  C    A+ +    H +  +  +     +GTAL+ +Y+KC +
Sbjct: 135 MQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSS 194

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  A   F  M E+N  TW+S++ G   NG  E++L +F   +  G   +     S +  
Sbjct: 195 IKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSA 254

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  + EG++ H  S +  +G   ++     L+D+Y + G + EA  V   +      
Sbjct: 255 CAGLATLIEGKQVHAISHKSGFGSNIYVS--SSLIDMYAKCGCIREAYLVFQGVLEVRSI 312

Query: 259 GAWGALLN 266
             W A+++
Sbjct: 313 VLWNAMIS 320



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C    +   GR  H  I R  L+M +     L++MYSKC  ++ A   F  M  ++
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV-VGLVEEGREHF 213
           + +W +VIG L  N    ++L+L   M++ G   NE T  SVL  C     ++E  + H 
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHA 168

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
            S++       ++     L+ +Y +   + +A  +   MP K +A  W +++
Sbjct: 169 FSIKAAIDSNCFVG--TALLHVYAKCSSIKDASQMFESMPEK-NAVTWSSMM 217


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/464 (40%), Positives = 281/464 (60%), Gaps = 9/464 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEP----DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           YA   CL    ++ D +  P    D++    +I++  K G+ D A+++F +M  RD + W
Sbjct: 104 YAHCDCLDLAHQLLDEM--PYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTW 161

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+ G  +  +  EAL  F  M   +V+ +  +  SV++ C  LG+       H  +  
Sbjct: 162 NSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIE 221

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
            ++++   L +AL+D+YSKCG +N A   F  ++  +V  W S+I GLA++G    ++ +
Sbjct: 222 KKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGV 281

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           FS M+   V P+ +TF+ +L  C   GLVE+GR +FD MRR Y I+P LEHYG +VDL G
Sbjct: 282 FSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLG 341

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG ++EA  +I  MPM+P    W ALL+ACR +KN E+GE+A  K+  L   N G Y+L
Sbjct: 342 RAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHL---NSGDYIL 398

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           LSN+Y   + WD    VR++MK  GV+K  G S +E+   +H+F AGD +HP    I  +
Sbjct: 399 LSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKV 458

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L  + RR KL G++  T+ V+ D+ +EE+E+ L  HSEK+A+A+ ++    G  IR+ KN
Sbjct: 459 LEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKN 518

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR C DCH   K++S++ +R IIVRDR RFH F+ G CSC+ YW
Sbjct: 519 LRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562


>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
 gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
          Length = 434

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/434 (43%), Positives = 268/434 (61%), Gaps = 1/434 (0%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           MI+A A+ G +  A+  FD  P R+  +WNAM+AGYAQ G  + ALHLF  M     + +
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
            V+ V+ + AC  L AL  GR  H       L   V + TA+V+MY+KCGN++ A   F 
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            ++ +N+ +W+++I     NG  +++L+ F  M   G+ P+ VTF S+L  C   GL E 
Sbjct: 121 SIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEH 180

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
           G  HFD +  ++GI P ++H+ C+VDL GR+GRL EA +++  MP  P    W  LL AC
Sbjct: 181 GFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTLLAAC 240

Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
           R++K+ E G+ A+  L+EL ++  G YVLLSNI+A + +      VR +M+A+GV+K PG
Sbjct: 241 RVHKSVERGKRAAEVLLELTSEIPGYYVLLSNIHAAAGDHAEKAKVRDLMEARGVRKKPG 300

Query: 329 CSVIEVDREVHEFFAGDE-THPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
            S IE++   HEF AG++  HP+  +I   L  +S  +K  GYV +T  V+  + E+EKE
Sbjct: 301 WSTIEINDRFHEFTAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLVNEDEKE 360

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L  HSEK+AIA GLIS   G  +R+VKNLRVC DCH  TK ISK+  R+IIVRD NRF
Sbjct: 361 SLLFFHSEKLAIACGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIVRDLNRF 420

Query: 448 HHFKEGKCSCKGYW 461
           HH + G CSC  YW
Sbjct: 421 HHTENGVCSCGDYW 434



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V   TA+++  AKCG++D A  +F  +  ++ I+W+ M+  + Q G +  AL  F  M +
Sbjct: 96  VEISTAIVNMYAKCGNLDDATIVFSSIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNV 155

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSKCGNM 140
             +  + V+  S+LSAC+H G  + G + H  +  +   +T T+     +VD+  + G +
Sbjct: 156 DGLFPDAVTFKSILSACSHAGLFEHG-FFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRL 214

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEK 173
            +A +    M    +  TW +++    ++ + E+
Sbjct: 215 LEAEELVQTMPFVPDDVTWNTLLAACRVHKSVER 248


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 279/445 (62%), Gaps = 1/445 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           GIH  D+    +++S  AK G ++ A   FDE+  +D I++ A+L+G  Q GK+ EA  +
Sbjct: 337 GIHA-DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLV 395

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ  +++ +  +MVS++ AC+HL AL  G+ +H  +    L +  ++  +L+DMY+K
Sbjct: 396 FKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAK 455

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++ +   F  M  R+V +W ++I G  ++G G+++  LF  MK  G  P++VTF+ +
Sbjct: 456 CGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICL 515

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           +  C   GLV EG+  FD+M  +YGI P +EHY C+VDL  R G LDEA   I  MP+K 
Sbjct: 516 IAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKA 575

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               WGALL ACR++KN ++G+  SR + +L  +  G +VLLSNI++ +  +D    VR 
Sbjct: 576 DVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRI 635

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           I K KG KK PG S IE++  +H F  GD++HP   +I   L  I   +K  GY A+T+ 
Sbjct: 636 IQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSF 695

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+ D+EEEEKE  L  HSEK+AIAFG++SL E   I + KNLRVC DCH   K ++ V N
Sbjct: 696 VLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRN 755

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R IIVRD NRFHHFK G+CSC  +W
Sbjct: 756 RTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 8/273 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL-H 75
           G+H  D+   TA+I    +C     AR +F +MP RD +AWNAMLAGYA  G    A+ H
Sbjct: 130 GLHT-DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAH 188

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTLGTALVD 132
           L  +     ++ N  ++VS+L      GAL QG   H Y  R  L+     V +GTAL+D
Sbjct: 189 LLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLD 248

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEV 191
           MY+KC  +  A   F GM  RN  TW+++IGG  +     ++  LF  M   G+   +  
Sbjct: 249 MYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           +  S LR C  +  +  G +   ++  + GI   L     L+ +Y +AG ++EA    ++
Sbjct: 309 SVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDE 367

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
           + +K    ++GALL+ C      E   L  +K+
Sbjct: 368 IAVKDTI-SYGALLSGCVQNGKAEEAFLVFKKM 399



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 4/249 (1%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
            YC +     +E  V+  TA++   AKC  +  A ++F  MP R+ + W+A++ G+  C 
Sbjct: 226 AYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCD 285

Query: 69  KSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           +  EA +LF  M +  +  L+  S+ S L  C  L  L  G   H  I ++ +   +T  
Sbjct: 286 RMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTAS 345

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            +L+ MY+K G +N+A  FF  +  ++  ++ +++ G   NG  E++  +F  M+   + 
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNME 405

Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P+  T VS++  C  +  ++ G+  H   + R   +E  +     L+D+Y + G++D + 
Sbjct: 406 PDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKIDLSR 463

Query: 247 DVINKMPMK 255
            V +KMP +
Sbjct: 464 QVFDKMPAR 472



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 14/237 (5%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G + LAR++FD +P  D  A+NA++  Y+  G    A+ L+  M    V  N+ +   VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            AC+ L  L  GR  H +     L   + + TAL+D+Y +C     A + F  M  R+V 
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 157 TWTSVIGGLAMNGAGEKSL-ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            W +++ G A +G    ++  L  +    G+RPN  T VS+L      G + +G     +
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG-----T 222

Query: 216 MRREYGIEPWLEHY-------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               Y +   LE           L+D+Y +  +L  A  V + MP++     W AL+
Sbjct: 223 SIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV-TWSALI 278


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/464 (40%), Positives = 281/464 (60%), Gaps = 9/464 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEP----DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW 57
           YA   CL    ++ D +  P    D++    +I++  K G+ D A+++F +M  RD + W
Sbjct: 65  YAHCDCLDLAHQLLDEM--PYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTW 122

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+ G  +  +  EAL  F  M   +V+ +  +  SV++ C  LG+       H  +  
Sbjct: 123 NSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIE 182

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
            ++++   L +AL+D+YSKCG +N A   F  ++  +V  W S+I GLA++G    ++ +
Sbjct: 183 KKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGV 242

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           FS M+   V P+ +TF+ +L  C   GLVE+GR +FD MRR Y I+P LEHYG +VDL G
Sbjct: 243 FSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLG 302

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
           RAG ++EA  +I  MPM+P    W ALL+ACR +KN E+GE+A  K+  L   N G Y+L
Sbjct: 303 RAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHL---NSGDYIL 359

Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
           LSN+Y   + WD    VR++MK  GV+K  G S +E+   +H+F AGD +HP    I  +
Sbjct: 360 LSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKV 419

Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
           L  + RR KL G++  T+ V+ D+ +EE+E+ L  HSEK+A+A+ ++    G  IR+ KN
Sbjct: 420 LEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKN 479

Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           LR C DCH   K++S++ +R IIVRDR RFH F+ G CSC+ YW
Sbjct: 480 LRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/452 (40%), Positives = 274/452 (60%), Gaps = 1/452 (0%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           +C  +  G+ + D     ++IS  AKCG +D A    DEM  +D ++++A+++G  Q G 
Sbjct: 335 HCHMIKSGM-DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGY 393

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
           + +AL +F  MQ   +     +M+++L AC+HL AL  G   H Y          ++  A
Sbjct: 394 AEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNA 453

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           ++DMYSKCG +  + + F  M+ R++ +W ++I G  ++G   ++L LF  ++  G++P+
Sbjct: 454 IIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPD 513

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           +VT ++VL  C   GLV EG+  F SM + + I+P + HY C+VDL  RAG LDEA   I
Sbjct: 514 DVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFI 573

Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
            +MP  P+   WGALL ACR +KN EMGE  S+K+  L  +  G +VL+SNIY+    WD
Sbjct: 574 QRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWD 633

Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
               +R I +  G KK PGCS +E+   +H F  G ++HP+   I   L E+  ++K  G
Sbjct: 634 DAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLG 693

Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
           Y A+++ V++D+EEEEKE  L  HSEKVAIAFG+++      I + KNLR+C DCH   K
Sbjct: 694 YRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIK 753

Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            I+ +  REI VRD +RFHHFK+G C+C+ +W
Sbjct: 754 FITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 132/233 (56%), Gaps = 4/233 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LM 80
           +VV QTA++   AKC  +  ARK+F+ + +++ + W+AM+ GY       +AL L+  ++
Sbjct: 244 NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDML 303

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
            I+ +     ++ ++L AC  L  L +G+  H ++ ++ + +  T+G +L+ MY+KCG M
Sbjct: 304 CIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIM 363

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A+ F   M  ++  +++++I G   NG  EK+L +F  M+ +G+ P   T +++L  C
Sbjct: 364 DNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPAC 423

Query: 201 CVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             +  ++ G   H  ++ R +  +  +     ++D+Y + G++  + ++ ++M
Sbjct: 424 SHLAALQHGTCCHGYTVVRGFTNDTSI--CNAIIDMYSKCGKITISREIFDRM 474



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 5/266 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           D+   TA++   AKCG +  A+ +F+ +   +RD +AWNAM+A ++      + +H    
Sbjct: 141 DLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQ 200

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   V  N  ++VS+L       AL QG+  H Y  RN     V L TAL+DMY+KC  
Sbjct: 201 MQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHL 260

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLR 198
           +  A   F  + ++N   W+++IGG  ++ +   +L L+  ++   G+ P   T  ++LR
Sbjct: 261 LFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLR 320

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  +  ++ G++    M +  G++        L+ +Y + G +D A+  +++M  K   
Sbjct: 321 ACAQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTV 379

Query: 259 GAWGALLNACRMYKNTEMGELASRKL 284
            ++ A+++ C      E   L  R++
Sbjct: 380 -SYSAIISGCVQNGYAEKALLIFRQM 404



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 38  DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVL 96
           ++ LAR +FD++P+   + WN M+  YA  G  +++++L+ H++Q+  V     +   +L
Sbjct: 56  EIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQL-GVTPTNFTFPFLL 114

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERN 154
            AC+ L AL  GR  H +     L M + + TAL+ MY+KCG++ +A   F  +  ++R+
Sbjct: 115 KACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRD 174

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HF 213
           +  W ++I   + +    +++   + M+QAGV PN  T VS+L        + +G+  H 
Sbjct: 175 IVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHA 234

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
             +R  +     L+    L+D+Y +   L  A  + N +  K +   W A++
Sbjct: 235 YYIRNFFFDNVVLQ--TALLDMYAKCHLLFYARKIFNTVN-KKNDVCWSAMI 283


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/468 (41%), Positives = 284/468 (60%), Gaps = 8/468 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDV---VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           Y+  G L   +++F  +    V   V    +++   KCG VD AR++ D MP R  ++W 
Sbjct: 304 YSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWT 363

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM+A YAQ G + EA++LF  M +   + ++++++SV+ +C  LG L  G+  H  I  +
Sbjct: 364 AMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSS 423

Query: 119 RL-KMTVTLGTALVDMYSKCGNMNKAMDFFWG--MKERNVYTWTSVIGGLAMNGAGEKSL 175
            L   ++ L  A++ MY KCGN+  A + F    ++ R+V TWT++I   A NG GE+++
Sbjct: 424 PLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAI 483

Query: 176 ELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           ELF  ++   G  PN VTF+SVL  C  +G +E+  EHF SM  ++G+ P  +HY CLVD
Sbjct: 484 ELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVD 543

Query: 235 LYGRAGRLDEALDVINK-MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
           L GRAGRL EA  ++ +    +     W A L+AC+M  + E  + A++++ ELE +N  
Sbjct: 544 LLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVA 603

Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
             VLLSN+YA       V  +R  MK+ GVKK  G S IE++  VHEF   D +HPR  E
Sbjct: 604 GRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLE 663

Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
           I   L  + R +K AGYV +T  V+ D++EE+K   L  HSE++A+A G+IS   G  +R
Sbjct: 664 IYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLLGYHSERLAMALGIISTPPGTTLR 723

Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +VKNLRVC DCH  TK IS++  R+IIVRD +RFHHFK+G CSC  YW
Sbjct: 724 VVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 40/280 (14%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+ G L   +K FD + + D +  TAM +  +  G++  AR+M   +   D IAWNA+L
Sbjct: 242 YAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALL 301

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
            GY++ G   E   LF  M                                   E   + 
Sbjct: 302 EGYSRTGDLDEVRRLFSAM-----------------------------------EHRTVA 326

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
            TV  GT LV++Y KCG ++ A      M  R   +WT++I   A NG   +++ LF  M
Sbjct: 327 TTVVAGT-LVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCM 385

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
              G  P+++T +SV+  C V+G +  G+     +R        L     ++ +YG+ G 
Sbjct: 386 DLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGN 445

Query: 242 LDEALDVINKMPMKPHA-GAWGALLNACRMYKNTEMGELA 280
           L+ A +V   +P++  +   W A++   R Y    +GE A
Sbjct: 446 LELAREVFESVPLRTRSVVTWTAMI---RAYAQNGVGEEA 482



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 132/327 (40%), Gaps = 69/327 (21%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++ + G     + VF+ +  P+    + +I A      +  AR +FD MP  D   WN M
Sbjct: 51  LFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIM 110

Query: 61  LAGYAQCGKSREALHLFHLM----------------QIHDVKLNEVSMV----------- 93
           +A YA+  +  +A  LFH M                  HD +L E S +           
Sbjct: 111 IAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHD-RLEEASALFRRMPLWDTVT 169

Query: 94  --SVLSACTHLGALDQGRWAHVYI----ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
             SVL    H G L + +     I    +R+      T   A++  Y K   ++ A   F
Sbjct: 170 CTSVLQGYAHNGHLAEAQELFDRIGGAGDRD-----ATACNAMIAAYGKNARVDLAEGLF 224

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-------------------AGVRP 188
             +K RN  +W+ ++   A NG  + + + F  M Q                    G R 
Sbjct: 225 AQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGARE 284

Query: 189 --------NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
                   + + + ++L G    G ++E R  F +M  E+         G LV+LYG+ G
Sbjct: 285 MLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAM--EHRTVATTVVAGTLVNLYGKCG 342

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNA 267
           R+D+A  V++ MP++    +W A++ A
Sbjct: 343 RVDDARRVLDAMPVRTSV-SWTAMIAA 368



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           + AC     L + +  H  I R+       L   L+D++ KCG+ + A   F  ++  N 
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNE 73

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
           Y+W+ +I     +     +  LF  M       +  T+  ++     +  +++ RE F  
Sbjct: 74  YSWSCIIQAYVSSSRIHDARALFDSMPGF----DAFTWNIMIAAYARINRLDDARELFHG 129

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           M     +  W      LV  Y R  RL+EA  +  +MP+
Sbjct: 130 MISGRDVVSW----AILVAGYARHDRLEEASALFRRMPL 164


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/449 (40%), Positives = 272/449 (60%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V+   +  D+     +++  A+CG  + A  +F E+  +D I WN +++G+ Q    ++
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQ 531

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL +F  M     K N  + +S +SA  +L  + QG+  H    +        +  AL+ 
Sbjct: 532 ALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALIS 591

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           +Y KCG++  A   F  M  RN  +W ++I   + +G G ++L+LF  MKQ G++PN+VT
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           F+ VL  C  VGLVEEG  +F SM   YG+ P  +HY C+VD+ GRAG+LD A   +++M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
           P+  +A  W  LL+AC+++KN E+GELA++ L+ELE  +  +YVLLSN YA +  W    
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            VR++MK +G++K PG S IEV   VH FF GD  HP  ++I   L E++ RL   GY  
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQ 831

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
               + ++ E+E+K+ T   HSEK+A+AFGL++L   +P+R++KNLRVC DCH   K  S
Sbjct: 832 ENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTS 891

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +V  REI++RD  RFHHF  G CSC  YW
Sbjct: 892 EVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 135/265 (50%), Gaps = 11/265 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++A++    +C + F G          A+I+     G   LA ++F +M   D + +N +
Sbjct: 166 IHAQVYKQAFCSETFVG---------NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTL 216

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G+AQCG    AL +F  MQ+  ++ + V++ S+L+AC  +G L +G+  H Y+ +  +
Sbjct: 217 ISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGM 276

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
                   +L+D+Y KCG++  A D F      NV  W  ++          KS E+F  
Sbjct: 277 SFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQ 336

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+  G+ PN+ T+  +LR C   G +E G E   S+  + G E  +   G L+D+Y + G
Sbjct: 337 MQATGIHPNQFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYG 395

Query: 241 RLDEALDVINKMPMKPHAGAWGALL 265
            LD+A  ++ +M  K    +W +++
Sbjct: 396 CLDKARKIL-EMLEKRDVVSWTSMI 419



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           +I   AK G V  AR++F E+  RD ++W AML+GYAQ G  +EA  L+  M    V   
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
              + SVLSACT      QGR  H  + +        +G AL+ +Y   G+   A   F 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M   +  T+ ++I G A  G GE +L++F  M+ +G+RP+ VT  S+L  C  VG +++
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           G++   S   + G+       G L+DLY + G ++ A D+ N
Sbjct: 264 GKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 131/253 (51%), Gaps = 4/253 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+     +I   +K G +D ARK+ + + +RD ++W +M+AGY Q     EAL  F  
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   V  + + + S  SAC  + A+ QG   H  +  +     +++   LV++Y++CG 
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGR 497

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             +A   F  ++ ++  TW  +I G   +   +++L +F  M QAG + N  TF+S +  
Sbjct: 498 SEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISA 557

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +  +++G++ H  +++  +  E   E    L+ LYG+ G +++A  + ++M ++   
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSET--EVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 259 GAWGALLNACRMY 271
            +W  ++ +C  +
Sbjct: 616 -SWNTIITSCSQH 627



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 7/259 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D + + +++    KCGD++ A  +F+     + + WN ML  Y Q     ++  +F  MQ
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  N+ +   +L  CT  G ++ G   H    +N  +  + +   L+DMYSK G ++
Sbjct: 339 ATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLD 398

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA      +++R+V +WTS+I G   +   E++L  F  M+  GV P+ +   S    C 
Sbjct: 399 KARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACA 458

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  + +G + H       Y  +  +  +  LV+LY R GR +EA  +  ++  K     
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAAD--ISIWNTLVNLYARCGRSEEAFSLFREIEHKDEI-T 515

Query: 261 WGALLNA---CRMYKNTEM 276
           W  L++     R+YK   M
Sbjct: 516 WNGLISGFGQSRLYKQALM 534



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWA-----HVYIERNRLKMTVTLGTALVDMYSKC 137
           H   L    +   L AC   G     RW      H       L     +G  L+D+Y+K 
Sbjct: 36  HHRALGSADLTCALQACRGRG----NRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKN 91

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
           G + +A   F  +  R+  +W +++ G A +G G+++  L+S M    V P      SVL
Sbjct: 92  GLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVL 151

Query: 198 RGCCVVGLVEEGR 210
             C    L  +GR
Sbjct: 152 SACTKGKLFAQGR 164


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/443 (43%), Positives = 274/443 (61%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    +M+    KC     AR +FD M  R+ ++W +M+A YAQ G   EA   +  
Sbjct: 145 EMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLG 204

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            +    +  +  + S L+ C  L  L  GR  H    R+ +   + + +ALVDMY KCG 
Sbjct: 205 ARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGC 264

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLR 198
           +  A   F+   +RN+ TW ++IGG A  G  + +L +F  M ++G   PN +T V+V+ 
Sbjct: 265 VEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVIT 324

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL ++G E F++MR  +GIEP  EHY C+VDL GRAG  ++A +VI  MPM+P  
Sbjct: 325 SCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSI 384

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL AC+M+  TE+G +A+ KL EL+ ++ G +VLLSN++A +  W    ++R+ M
Sbjct: 385 SVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEM 444

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K  G+KK PGCS +     VH F A D  H  YNEI+ +L ++ ++++ AGY+ +T   +
Sbjct: 445 KNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSL 504

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           YD+EEEEKE  + +HSEK+A+AFGLI +  GVPIRI+KNLR+C DCH   K IS +  RE
Sbjct: 505 YDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGRE 564

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFHHFK+ +CSC  YW
Sbjct: 565 IIVRDNNRFHHFKQYQCSCGDYW 587



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 6/247 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           +P V C  A +    K G + LAR +F EMP R+ +AWNA++      G+  E +  +  
Sbjct: 46  DPFVSC--AALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFG 103

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           ++      N VS  +  +AC     L  G   H ++ +   +M V++  ++VD Y KC  
Sbjct: 104 LREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRC 163

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             KA   F GM  RN  +W S++   A NGA E++   +   +++G  P +    S L  
Sbjct: 164 AGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTT 223

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C  +  +  GR  H  ++R    I+  +     LVD+YG+ G +++A  +  + P + + 
Sbjct: 224 CAGLLGLHLGRALHAVAVRS--CIDANIFVASALVDMYGKCGCVEDAEQIFYETPQR-NL 280

Query: 259 GAWGALL 265
             W A++
Sbjct: 281 VTWNAMI 287


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 273/445 (61%), Gaps = 5/445 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLM 80
           +   + A+I+   KCG++D   K+F  M ER D + WN+M++GY       +AL L   M
Sbjct: 551 EATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFM 610

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                +L+     +VLSA   +  L++G   H    R  L+  V +G+ALVDMYSKCG +
Sbjct: 611 LQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRL 670

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRG 199
           + A+ FF  M  RN Y+W S+I G A +G GE++L+LF  MK  G   P+ VTFV VL  
Sbjct: 671 DYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSA 730

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GL+EEG +HF+SM   YG+ P +EH+ C+ D+ GRAG LD+  D I KMPMKP+  
Sbjct: 731 CSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVL 790

Query: 260 AWGALLNAC--RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
            W  +L AC     +  E+G+ A+  L +LE +N   YVLL N+YA    W+ ++  R+ 
Sbjct: 791 IWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKK 850

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           MK   VKK  G S + +   VH F AGD++HP  + I   L E++R+++ AGYV  T   
Sbjct: 851 MKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFA 910

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEG-VPIRIVKNLRVCWDCHDVTKMISKVFN 436
           +YD+E+E KE+ L  HSEK+A+AF L + +   +PIRI+KNLRVC DCH   K ISK+  
Sbjct: 911 LYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEG 970

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R+II+RD NRFHHF++G CSC  +W
Sbjct: 971 RQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 15/294 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + DV     +I+A  + GD   ARK+FDEMP R+ ++W  +++GY++ G+ +EAL     
Sbjct: 33  DKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRD 92

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQ--GRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           M    +  N+ + VSVL AC  +G++    GR  H  + +    +   +   L+ MY KC
Sbjct: 93  MVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKC 152

Query: 138 -GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
            G++  A+  F  ++ +N  +W S+I   +  G    +  +FS M+  G RP E TF S+
Sbjct: 153 IGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSL 212

Query: 197 LRGCCVVGLVEEGREHFDSMR---REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           +   C   L E      + +    ++ G+   L     LV  + ++G L  A  V N+M 
Sbjct: 213 VTTAC--SLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQME 270

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK---NHGAYVLLSNIYAE 304
            +      G ++   R     + GE A++  +++ +    +  +YV+L + + E
Sbjct: 271 TRNAVTLNGLMVGLVRQ----KWGEEATKLFMDMNSMIDVSPESYVILLSSFPE 320



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 126/253 (49%), Gaps = 11/253 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   + ++SA AK G +  ARK+F++M  R+ +  N ++ G  +     EA  LF  M 
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301

Query: 82  IHDVKLNEVSMVSVLSACTHLG-----ALDQGRWAHVY-IERNRLKMTVTLGTALVDMYS 135
              + ++  S V +LS+           L +GR  H + I    +   V +G  LV+MY+
Sbjct: 302 SM-IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYA 360

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           KCG++  A   F+ M +++  +W S+I GL  NG   +++E +  M++  + P   T +S
Sbjct: 361 KCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLIS 420

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            L  C  +   + G++ H +S++   GI+  +     L+ LY   G L+E   + + MP 
Sbjct: 421 SLSSCASLKWAKLGQQIHGESLK--LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPE 478

Query: 255 KPHAGAWGALLNA 267
                +W +++ A
Sbjct: 479 HDQV-SWNSIIGA 490



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 7/269 (2%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           +A+LG   + + +  GI + +V    A+++  A+ G ++  RK+F  MPE D ++WN+++
Sbjct: 430 WAKLGQQIHGESLKLGI-DLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSII 488

Query: 62  AGYAQCGKS-REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
              A+  +S  EA+  F   Q    KLN ++  SVLSA + L   + G+  H    +N +
Sbjct: 489 GALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNI 548

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLELFS 179
               T   AL+  Y KCG M+     F  M E R+  TW S+I G   N    K+L+L  
Sbjct: 549 ADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVW 608

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M Q G R +   + +VL     V  +E G E H  S+R    +E  +     LVD+Y +
Sbjct: 609 FMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRA--CLESDVVVGSALVDMYSK 666

Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNA 267
            GRLD AL   N MP++ ++ +W ++++ 
Sbjct: 667 CGRLDYALRFFNTMPVR-NSYSWNSMISG 694



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
             +++  AKCG +  AR++F  M ++D ++WN+M+ G  Q G   EA+  +  M+ HD+ 
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
               +++S LS+C  L     G+  H    +  + + V++  AL+ +Y++ G +N+    
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLE----LFSLMKQAGVRPNEVTFVSVLRGCCV 202
           F  M E +  +W S+IG LA +   E+SL      F   ++AG + N +TF SVL     
Sbjct: 473 FSSMPEHDQVSWNSIIGALARS---ERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSS 529

Query: 203 VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
           +   E G++ H  +++     E   E+   L+  YG+ G +D    + ++M  +     W
Sbjct: 530 LSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKCGEMDGCEKIFSRMAERRDNVTW 587

Query: 262 GALLNA 267
            ++++ 
Sbjct: 588 NSMISG 593



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DVV  +A++   +KCG +D A + F+ MP R+  +WN+M++GYA+ G+  EAL LF  
Sbjct: 651 ESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFET 710

Query: 80  MQIH-DVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKC 137
           M++      + V+ V VLSAC+H G L++G +      +   L   +   + + D+  + 
Sbjct: 711 MKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRA 770

Query: 138 GNMNKAMDFFWGMKER-NVYTWTSVIGG 164
           G ++K  DF   M  + NV  W +V+G 
Sbjct: 771 GELDKLEDFIEKMPMKPNVLIWRTVLGA 798



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N V +  V S   H GA    R+ H  + +NRL   V L   L++ Y + G+   A   F
Sbjct: 3   NCVPLSFVQSCVGHRGA---ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVF 59

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
             M  RN  +W  ++ G + NG  +++L     M + G+  N+  FVSVLR C  +G V
Sbjct: 60  DEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 279/445 (62%), Gaps = 1/445 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           GIH  D+    +++S  AK G ++ A   FDE+  +D I++ A+L+G  Q GK+ EA  +
Sbjct: 337 GIH-ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLV 395

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  MQ  +++ +  +MVS++ AC+HL AL  G+ +H  +    L +  ++  +L+DMY+K
Sbjct: 396 FKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAK 455

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG ++ +   F  M  R+V +W ++I G  ++G G+++  LF  MK  G  P++VTF+ +
Sbjct: 456 CGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICL 515

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
           +  C   GLV EG+  FD+M  +YGI P +EHY C+VDL  R G LDEA   I  MP+K 
Sbjct: 516 IAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKA 575

Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
               WGALL ACR++KN ++G+  SR + +L  +  G +VLLSNI++ +  +D    VR 
Sbjct: 576 DVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRI 635

Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
           I K KG KK PG S IE++  +H F  GD++HP   +I   L  I   +K  GY A+T+ 
Sbjct: 636 IQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSF 695

Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
           V+ D+EEEEKE  L  HSEK+AIAFG++SL E   I + KNLRVC DCH   K ++ V N
Sbjct: 696 VLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRN 755

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           R IIVRD NRFHHFK G+CSC  +W
Sbjct: 756 RTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 8/273 (2%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL-H 75
           G+H  D+   TA+I    +C     AR +F +MP RD +AWNAMLAGYA  G    A+ H
Sbjct: 130 GLHT-DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAH 188

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTLGTALVD 132
           L  +     ++ N  ++VS+L      GAL QG   H Y  R  L+     V +GTAL+D
Sbjct: 189 LLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLD 248

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEV 191
           MY+KC  +  A   F GM  RN  TW+++IGG  +     ++  LF  M   G+   +  
Sbjct: 249 MYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           +  S LR C  +  +  G +   ++  + GI   L     L+ +Y +AG ++EA    ++
Sbjct: 309 SVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDE 367

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
           + +K    ++GALL+ C      E   L  +K+
Sbjct: 368 IAVKDTI-SYGALLSGCVQNGKAEEAFLVFKKM 399



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 4/249 (1%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
            YC +     +E  V+  TA++   AKC  +  A ++F  MP R+ + W+A++ G+  C 
Sbjct: 226 AYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCD 285

Query: 69  KSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
           +  EA +LF  M +  +  L+  S+ S L  C  L  L  G   H  I ++ +   +T  
Sbjct: 286 RMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTAS 345

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            +L+ MY+K G +N+A  FF  +  ++  ++ +++ G   NG  E++  +F  M+   + 
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNME 405

Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           P+  T VS++  C  +  ++ G+  H   + R   +E  +     L+D+Y + G++D + 
Sbjct: 406 PDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKIDLSR 463

Query: 247 DVINKMPMK 255
            V +KMP +
Sbjct: 464 QVFDKMPAR 472



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 14/237 (5%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
           G + LAR++FD +P  D  A+NA++  Y+  G    A+ L+  M    V  N+ +   VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 97  SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
            AC+ L  L  GR  H +     L   + + TAL+D+Y +C     A + F  M  R+V 
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 157 TWTSVIGGLAMNGAGEKSL-ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            W +++ G A +G    ++  L  +    G+RPN  T VS+L      G + +G     +
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG-----T 222

Query: 216 MRREYGIEPWLEHY-------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
               Y +   LE           L+D+Y +  +L  A  V + MP++     W AL+
Sbjct: 223 SIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV-TWSALI 278


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/445 (41%), Positives = 287/445 (64%), Gaps = 3/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV+  T ++   +  G V +AR++FD+MP RD +AWNAM++ ++Q G  +EAL  ++
Sbjct: 136 YDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYN 195

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+  +V ++  ++V ++S+C HLGAL+ G   H +   N L  ++ +G AL+DMY+KCG
Sbjct: 196 QMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCG 255

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++++A+  F  M+ ++++TW S+I G  ++G G +++  F  M +A ++PN VTF+ +L 
Sbjct: 256 SLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLC 315

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           GC   GLV+EG ++F+ M  ++ ++P ++HYGCLVDLYGRAG+LD+AL++++        
Sbjct: 316 GCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSV 375

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL +C+++KN  +GE+A  +L EL   + G  +LL+ IYA  K+   V  +R+++
Sbjct: 376 -LWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMI 434

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K++G K  PG S IE+  +VH+F   D++H    E+   L E+  +    GYV + +   
Sbjct: 435 KSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISS 494

Query: 379 YD-IEEEEKEDTLCK-HSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            D +   E   T C  HSEK+AIAFGL    +G  IRIVKNLRVC DCH   K +S  FN
Sbjct: 495 LDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFN 554

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           REIIVRDR RFHHFK G+CSC  YW
Sbjct: 555 REIIVRDRVRFHHFKGGECSCNDYW 579



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 2/225 (0%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A +  G +  A+ +F +M      AWN+++ G+AQ     +A+  ++ M      + +  
Sbjct: 47  AISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTF 106

Query: 92  MVS-VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
             S VL AC  + A  + +  H  + R      V + T LV  YS  G++  A   F  M
Sbjct: 107 TFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKM 166

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
             R++  W ++I   +  G  +++L+ ++ M+   V  +  T V ++  C  +G +  G 
Sbjct: 167 PARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGV 226

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +      RE G++  L     L+D+Y + G LD+A+ + ++M  K
Sbjct: 227 Q-MHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRK 270


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/434 (40%), Positives = 270/434 (62%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++ A AK      AR +FDEMP RD + W ++L G A+ G    AL ++  M    V+ 
Sbjct: 82  ALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEP 141

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +E  + + LS+C     L+ G+  H    R  L+  +++G +LV MY+K G++ +A   F
Sbjct: 142 DEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVF 201

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
              + R   TWT++I G A NG GE+SL++++ M  +G RP+ VTF+ +L  C   GLV+
Sbjct: 202 DATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVD 261

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            GR HF SM+ ++GI P  +HY C+VD+ GRAGRLDEA++++++  MK  A  W ALL A
Sbjct: 262 AGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLGA 321

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR ++N E+ E A+  +  L+  +   Y++LSN+Y+  + W  V  +R +MK++G+ K P
Sbjct: 322 CRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIAKEP 381

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           GCS +      H F+  D  HPR +EI   + E+  +++  G+VA+T+  + D   E +E
Sbjct: 382 GCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEGRE 441

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L  HSE++A+AFGL++L  G P+R+ KNLRVC DCH   KM++KV+ REII+RD N F
Sbjct: 442 KGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSNCF 501

Query: 448 HHFKEGKCSCKGYW 461
           HH ++G CSC  YW
Sbjct: 502 HHMRDGVCSCGDYW 515



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 5/213 (2%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQI-HDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113
           +A+NA ++  ++ G  + AL LFH M+    +  +E +   +L++   L         H 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHA 66

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173
            + R  L   + +  ALVD Y+K      A   F  M  R+V TWTS++ GLA +G+ + 
Sbjct: 67  LLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDA 126

Query: 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCL 232
           +L ++  M  +GV P+E    + L  C     +E G+  H  ++R   G+EP+L     L
Sbjct: 127 ALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVR--LGLEPFLSVGNSL 184

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V +Y + G L EA  V +   ++     W AL+
Sbjct: 185 VSMYAKTGSLREARKVFDATRLRCPV-TWTALI 216



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           ELG   +   V  G+ EP +    +++S  AK G +  ARK+FD    R P+ W A++ G
Sbjct: 160 ELGQSVHATAVRLGL-EPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVG 218

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           YAQ G+  E+L ++  M     + + V+ + +L AC+H G +D GR    + +  +    
Sbjct: 219 YAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGR---AHFKSMQADHG 275

Query: 124 VTLG----TALVDMYSKCGNMNKAMDFF-WGMKERNVYTWTSVIGG 164
           +T G      +VD+  + G +++AM+       + +   W +++G 
Sbjct: 276 ITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLGA 321


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/441 (43%), Positives = 278/441 (63%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV     ++   AKCG VD AR +FD +  RD + WN+M+A Y Q G+  EAL L   M 
Sbjct: 197 DVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMA 256

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            + +     ++VS +SA     AL +GR  H +  R    +   L T+LVDMY+K G + 
Sbjct: 257 ANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQ 316

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGC 200
            A   F  + +R + +W ++I G  M+G  +++L LF+ MK  A V P+ +TFV VL  C
Sbjct: 317 VARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSAC 376

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G+VEE +E F  M   Y I+P ++HY C++D+ G  GR +EA D+I  M ++P +G 
Sbjct: 377 NHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGI 436

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALLN C+++KN E+GELA +KL+ELE ++ G YV LSNIYA+S  W++   VR++M  
Sbjct: 437 WGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTN 496

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G+KK+  CS IE+  + H F  GD +HPR +EI   L  +   +  AGYV +  PV ++
Sbjct: 497 RGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHN 556

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           ++++EK + +  HSE++AIAFGLIS   G  + + KNLRVC DCH V K+IS++  REII
Sbjct: 557 VDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREII 616

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NR+HHF  G+CSCK YW
Sbjct: 617 IRDVNRYHHFVNGECSCKDYW 637



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 4/256 (1%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           PD V  T ++   A CG V  AR++FD MP+R+   WN ++  YA+ G    A+ L+  M
Sbjct: 95  PDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGM 154

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
             H V+ +  +   VL AC  L  L+ GR  H  +   R    V +   +VDMY+KCG +
Sbjct: 155 VEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCV 214

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F G+  R+   W S+I     NG   ++L L   M   G+ P   T VS +   
Sbjct: 215 DDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAA 274

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
                +  GRE H    RR +G++  L+    LVD+Y ++G +  A  +  ++ MK    
Sbjct: 275 ADAAALPRGRELHGFGWRRGFGLQDKLK--TSLVDMYAKSGWVQVARVLFEQL-MKRELV 331

Query: 260 AWGALLNACRMYKNTE 275
           +W A++    M+ + +
Sbjct: 332 SWNAMICGYGMHGHAD 347



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 6/177 (3%)

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
            S+L +C   G+L  GR  H  +  + L     L T LVD+Y+ CG +  A   F GM +
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           RNV+ W  +I   A  G  E ++ L+  M + GV P+  T+  VL+ C  +  +E GRE 
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGRE- 184

Query: 213 FDSMRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
               +R  G     + + C  +VD+Y + G +D+A  V + + ++  A  W +++ A
Sbjct: 185 --VHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVR-DAVVWNSMIAA 238


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/443 (41%), Positives = 278/443 (62%), Gaps = 1/443 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV   ++++   AKCG++  ARKMFDEMP R+ + W+ M+ GYAQ G++ EAL LF 
Sbjct: 147 YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFK 206

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
                ++ +N+ S  +V+S C +   L+ GR       ++    +  +G++LV +YSKCG
Sbjct: 207 EALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCG 266

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  +  RN+  W +++   A +   +K +ELF  MK +G++PN +TF++VL 
Sbjct: 267 DLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLN 326

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EG+ +FD M+ E  IEP  +HY  LVD+ GRAG+L+EAL+++  MP+ P  
Sbjct: 327 ACSHAGLVDEGKYYFDLMK-ESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTE 385

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL +C ++KNTE+   A+ K+ EL   + G ++ LSN YA    ++     R+++
Sbjct: 386 SVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLL 445

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G KK  G S +E   +VH F AG+  H R  EI   L E+   ++ AGYVA+T+ V+
Sbjct: 446 RDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVL 505

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            +++ +EK  T+  HSE++AIAFGLI+     PIR++KNLRVC DCH+  K +S    R 
Sbjct: 506 REVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRV 565

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFH F++GKCSC  YW
Sbjct: 566 IIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 118/235 (50%), Gaps = 4/235 (1%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           +R+ F++ P++    W+++++ +AQ      +L     M    ++ ++  + S   +C  
Sbjct: 69  SRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGI 128

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L   D G+  H    +      V +G++LVDMY+KCG +  A   F  M  RNV TW+ +
Sbjct: 129 LSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGM 188

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREY 220
           + G A  G  E++L LF       +  N+ +F +V+  C    L+E GR+     ++  +
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSF 248

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
               ++     LV LY + G L+ A  V +++PM+ + G W A+L AC  + +T+
Sbjct: 249 DSSSFVG--SSLVSLYSKCGDLEGAYQVFDEVPMR-NLGIWNAMLKACAQHSHTQ 300



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           +G   H YI ++ L +   +   L++ YSK      +   F    +++  TW+S+I   A
Sbjct: 33  KGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFA 92

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPW 225
            N     SLE    M    +RP++    S  + C ++   + G+  H  SM+  Y  + +
Sbjct: 93  QNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVF 152

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           +     LVD+Y + G +  A  + ++MP++ +   W  +     MY   +MGE
Sbjct: 153 VG--SSLVDMYAKCGEIVYARKMFDEMPLR-NVVTWSGM-----MYGYAQMGE 197


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/443 (43%), Positives = 271/443 (61%)

Query: 19   HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
            +  D+    A++S  A+CG V  A   FD++  +D I+WN++++G+AQ G   EAL LF 
Sbjct: 605  YSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFS 664

Query: 79   LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
             M     ++N  +    +SA  ++  +  G+  H  I +        +   L+ +Y+KCG
Sbjct: 665  QMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCG 724

Query: 139  NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            N++ A   F+ M E+N  +W +++ G + +G G K+L LF  MKQ GV PN VTFV VL 
Sbjct: 725  NIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLS 784

Query: 199  GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
             C  VGLV+EG ++F SMR  +G+ P  EHY C+VDL GR+G L  A   + +MP++P A
Sbjct: 785  ACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDA 844

Query: 259  GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
                 LL+AC ++KN ++GE A+  L+ELE K+   YVLLSN+YA +  W      RQ+M
Sbjct: 845  MVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMM 904

Query: 319  KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
            K +GVKK PG S IEV+  VH FFAGD+ HP  ++I   L +++      GY+  TN ++
Sbjct: 905  KDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLL 964

Query: 379  YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
             D E  +K  T   HSEK+AIAFGL+SL    PI + KNLRVC DCH+  K +SK+ +R 
Sbjct: 965  NDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRV 1024

Query: 439  IIVRDRNRFHHFKEGKCSCKGYW 461
            I+VRD  RFHHFK G CSCK YW
Sbjct: 1025 IVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 137/243 (56%), Gaps = 5/243 (2%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83
           VC  A+++  ++ G+   A ++F+ M +RD +++N++++G +Q G S +AL LF  M + 
Sbjct: 308 VC-NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLD 366

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
            +K + V++ S+LSAC+ +GAL  G+  H Y  +  +   + L  AL+D+Y KC ++  A
Sbjct: 367 CLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTA 426

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
            +FF   +  NV  W  ++    +     +S ++F+ M+  G+ PN+ T+ S+LR C  +
Sbjct: 427 HEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSL 486

Query: 204 GLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
             V+ G + H   ++  +    ++     L+D+Y + G+LD AL +  ++  K    +W 
Sbjct: 487 RAVDLGEQIHTQVLKTGFQFNVYVS--SVLIDMYAKLGKLDHALKIFRRLKEKD-VVSWT 543

Query: 263 ALL 265
           A++
Sbjct: 544 AMI 546



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 129/246 (52%), Gaps = 2/246 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   + +I   AK G +D A K+F  + E+D ++W AM+AGYAQ  K  EAL+LF  MQ
Sbjct: 507 NVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQ 566

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  + +   S +SAC  + AL+QG+  H     +     +++G ALV +Y++CG + 
Sbjct: 567 DQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVR 626

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  ++  +W S+I G A +G  E++L LFS M +AG   N  TF   +    
Sbjct: 627 DAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAA 686

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            V  V+ G++   +M  + G +   E    L+ LY + G +D+A     +MP K    +W
Sbjct: 687 NVANVKLGKQ-IHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEI-SW 744

Query: 262 GALLNA 267
            A+L  
Sbjct: 745 NAMLTG 750



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 125/247 (50%), Gaps = 4/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D++ + A++    KC D+  A + F      + + WN ML  Y       E+  +F  MQ
Sbjct: 406 DIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQ 465

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  ++ N+ +  S+L  C+ L A+D G   H  + +   +  V + + L+DMY+K G ++
Sbjct: 466 MEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLD 525

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  +KE++V +WT++I G A +    ++L LF  M+  G+  + + F S +  C 
Sbjct: 526 HALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA 585

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  + +G++ H  +    Y  +  L     LV LY R G++ +A    +K+  K +  +
Sbjct: 586 GIQALNQGQQIHAQACVSGYSDD--LSVGNALVSLYARCGKVRDAYFAFDKIFSKDNI-S 642

Query: 261 WGALLNA 267
           W +L++ 
Sbjct: 643 WNSLISG 649



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 38/341 (11%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E  +     +I    K G ++ A+K+FD + +RD ++W AML+G +Q G   EA+ LF 
Sbjct: 201 YENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFC 260

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    V        SVLSACT +     G   H  + +    +   +  ALV +YS+ G
Sbjct: 261 QMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLG 320

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N   A   F  M +R+  ++ S+I GL+  G  +K+LELF  M    ++P+ VT  S+L 
Sbjct: 321 NFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS 380

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL----------------------- 235
            C  VG +  G++ F S   + G+   +   G L+DL                       
Sbjct: 381 ACSSVGALLVGKQ-FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVV 439

Query: 236 --------YGRAGRLDEALDVINKMPM---KPHAGAWGALLNACRMYKNTEMGELASRKL 284
                   YG    L+E+  +  +M M   +P+   + ++L  C   +  ++GE    ++
Sbjct: 440 LWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQV 499

Query: 285 VELETKNHGAYV--LLSNIYAESKNWDRVINVRQIMKAKGV 323
           ++   +    YV  +L ++YA+    D  + + + +K K V
Sbjct: 500 LKTGFQ-FNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 114/251 (45%), Gaps = 21/251 (8%)

Query: 8   LGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
           +G+C +V        V+C+  M    A  GD+D A  +FDEMP R    WN +L  +   
Sbjct: 97  MGFCAEV--------VLCERLMDLYIA-FGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAG 147

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG----RWAHVYIERNRLKMT 123
             +   L LF  M    VK +E +   VL  C   G  D         H     +  + +
Sbjct: 148 KMAGRVLGLFRRMLQEKVKPDERTYAGVLRGC---GGGDVPFHCVEKIHARTITHGYENS 204

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           + +   L+D+Y K G +N A   F G+++R+  +W +++ GL+ +G  E+++ LF  M  
Sbjct: 205 LFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHT 264

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--LVDLYGRAGR 241
           +GV P    F SVL  C  V   + G E    +  + G    LE Y C  LV LY R G 
Sbjct: 265 SGVYPTPYIFSSVLSACTKVEFYKVG-EQLHGLVLKQGFS--LETYVCNALVTLYSRLGN 321

Query: 242 LDEALDVINKM 252
              A  V N M
Sbjct: 322 FIPAEQVFNAM 332



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 1/210 (0%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
            A+   Y+        ++  HLM+   V+ N  + + +L  C   G    G   H  I +
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                 V L   L+D+Y   G+++ A+  F  M  R +  W  V+          + L L
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL 156

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M Q  V+P+E T+  VLRGC    +     E   +    +G E  L     L+DLY 
Sbjct: 157 FRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYF 216

Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           + G L+ A  V + +  K  + +W A+L+ 
Sbjct: 217 KNGFLNSAKKVFDGL-QKRDSVSWVAMLSG 245


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/463 (40%), Positives = 284/463 (61%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     + VFD I   + V  T+MIS  A+ G    A  +F + P R+  +W A+
Sbjct: 149 MYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTAL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G  Q G    +  LF+ M+   + + + + + SV+  C +L  L+ G+  H  +    
Sbjct: 209 ISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALG 268

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  + +  ALVDMY+KC ++  A D F+ M  ++V +WTS+I G A +G  E++L L+ 
Sbjct: 269 FESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYD 328

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  + ++PNEVTFV +L  C   GLV  GRE F SM  +Y I P L+HY CL+DL  R+
Sbjct: 329 EMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRS 388

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G LDEA ++++K+P KP    W +LL+AC  + N EMG   + ++++L+ ++   Y+LLS
Sbjct: 389 GHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLS 448

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE-THPRYNEIEVML 358
           N+YA ++ W  V  VR++M +  V+K PG S I+  ++   F AG+   HP  NEI  +L
Sbjct: 449 NVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLL 508

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            ++   ++  GYV NT+ V+YDIE++EKE  L  HSE++A+A+GL+    G  IRIVKNL
Sbjct: 509 KDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNL 568

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH+V K IS +  REI+VRD  R+HHFKEGKCSC  +W
Sbjct: 569 RICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 35/279 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q +  G  +  ++  T ++    KCG +  A ++FDEMP RD ++W ++L  + +   
Sbjct: 26  HSQIIKAGFDKSSLLSNT-LLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALI 84

Query: 70  SREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            R  L + + M  HD ++ +      ++ AC+ LG L  G+  H     +       + +
Sbjct: 85  PRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKS 144

Query: 129 ALVDMYSKCGNMN-------------------------------KAMDFFWGMKERNVYT 157
           +L+DMY+KCG  +                               +AMD F     RN+++
Sbjct: 145 SLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFS 204

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVR-PNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           WT++I GL  +G G  S  LF+ M++ G+   + +   SV+ GC  + L+E G++    +
Sbjct: 205 WTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ-IHGL 263

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
               G E  L     LVD+Y +   +  A D+  +MP K
Sbjct: 264 VIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  I +     +  L   L+D+Y KCG + +A+  F  M  R+  +W S++         
Sbjct: 26  HSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIP 85

Query: 172 EKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
            ++L + + M    G++P+   F  ++R C  +G +  G++ H   M   +  +  ++  
Sbjct: 86  RRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVK-- 143

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             L+D+Y + G+ DEA  V + +  K ++ +W ++++
Sbjct: 144 SSLIDMYTKCGQPDEARAVFDSILFK-NSVSWTSMIS 179


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/462 (39%), Positives = 289/462 (62%), Gaps = 12/462 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+   L   + +F  ++E D+V  T+MI+A ++ G++  AR+ FD M  ++ I WNAM
Sbjct: 415 MYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAM 474

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L  Y Q G   + L ++++M    DV+ + V+ V++   C  LGA   G        +  
Sbjct: 475 LGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 534

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L +  ++  A++ MYSKCG + +A   F  +  +++ +W ++I G + +G G++++E+F 
Sbjct: 535 LILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 594

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            + + G +P+ +++V+VL GC   GLV+EG+ +FD M+R + I P LEH+ C+VDL GRA
Sbjct: 595 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRA 654

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I++MPMKP A  WGALL+AC+++ N E+ ELA++ + EL++ + G+Y+L++
Sbjct: 655 GHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 714

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IYA++   D    +R++M+ KG+KK PG S +EV+ +VH F A D +HP+   I   L 
Sbjct: 715 KIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLD 774

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++   GYV   +P            +   HSEK+A+AFGL+SL   +PI I+KNLR
Sbjct: 775 ELMEKIARLGYVRTDSP-----------RSEIHHSEKLAVAFGLMSLPAWMPIHIMKNLR 823

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+IS V  RE ++RD  RFHHF  G CSC  YW
Sbjct: 824 ICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 151/293 (51%), Gaps = 9/293 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+   G +    ++F  I EP + C+ +M+    K   VD A ++FD MPERD ++WN M
Sbjct: 182 MFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMM 241

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++  +Q G+ REAL +   MQ   V+L+  +  S L+AC  L +L  G+  H  + RN  
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            +   + +ALV++Y+KCG   +A   F  + +RN   WT +I G   +G   +S+ELF+ 
Sbjct: 302 CIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQ 361

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+   +  ++    +++ GCC    +  GR+   S+  + G    +     L+ +Y +  
Sbjct: 362 MRAELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCD 420

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA-SRKLVE-LETKN 291
            L  A  +   M  K    +W +++ A     ++++G +A +R+  + + TKN
Sbjct: 421 NLQSAESIFRFMNEKDIV-SWTSMITA-----HSQVGNIAKAREFFDGMSTKN 467



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 37/291 (12%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D    +A++   AKCG    A+ +F+ + +R+ +AW  ++AG+ Q G   E++ LF+ M+
Sbjct: 304 DPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMR 363

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC---- 137
              + L++ ++ +++S C     L  GR  H    ++     V +  +L+ MY+KC    
Sbjct: 364 AELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQ 423

Query: 138 ---------------------------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
                                      GN+ KA +FF GM  +NV TW +++G    +GA
Sbjct: 424 SAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGA 483

Query: 171 GEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
            E  L ++++M  +  VRP+ VT+V++ +GC  +G  + G +       + G+       
Sbjct: 484 EEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLG-DQIIGRTVKVGLILDTSVA 542

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA 280
             ++ +Y + GR+ EA  V + + +K    +W A++     Y    MG+ A
Sbjct: 543 NAVITMYSKCGRILEARKVFDFLNVKDIV-SWNAMITG---YSQHGMGKQA 589



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 135/315 (42%), Gaps = 37/315 (11%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I  P+V+    M++   K G +  A ++F  MP RD  +WN +++GY Q  +   +L  F
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 78  HLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
             M +  D   N  +    + +C  LG           +++   +    +  ALVDM+ +
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVR 185

Query: 137 CGN-------------------------------MNKAMDFFWGMKERNVYTWTSVIGGL 165
           CG                                ++ A++ F  M ER+V +W  ++  L
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
           + +G   ++L++   M+  GVR +  T+ S L  C  +  +  G++ H   +R    I+P
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK-NTEMGELASRK 283
           ++     LV+LY + G   EA  V N +  + +  AW  L+     +   TE  EL ++ 
Sbjct: 306 YVA--SALVELYAKCGCFKEAKGVFNSLHDRNNV-AWTVLIAGFLQHGCFTESVELFNQM 362

Query: 284 LVELETKNHGAYVLL 298
             EL T +  A   L
Sbjct: 363 RAELMTLDQFALATL 377


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/385 (45%), Positives = 264/385 (68%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  GC+   +++FDG+   DV    AM++  AK GDVD AR +F+ MPER+ I+W A+
Sbjct: 183 MYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAV 242

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ  +  EA+ +F  MQ+ +V+ +E++M++ LSAC HLGAL+ G W H YI+++ L
Sbjct: 243 IAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGL 302

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V L  AL+DMY+KCG + KA++ F  M+ ++V TWTS+I GLA++G G ++LE+FS 
Sbjct: 303 SKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSC 362

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++  ++PNE+TFV++L  CC VGLVE GR +F  M  +YGI+P ++HYGC++DL GRAG
Sbjct: 363 MERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAG 422

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA +++  MP + +A  WG+LL A R++ + E+G+ A + L+++E  N G Y LLSN
Sbjct: 423 FLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSN 482

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    W+    VR++M+  GVKK+PG S IEV+  VHEF AGD+ HP+   I  +L +
Sbjct: 483 IYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHPQSERIFEVLCK 542

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEE 385
           I+ + K+A YV   +  M +  +E 
Sbjct: 543 INLQSKIAMYVQKEHVEMLESNKES 567



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 33/283 (11%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D +  +  I AC+  G    +  +F      D   +N ++   +    + EA+ L++ 
Sbjct: 70  DQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNR 129

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +   D++ +  S+  VL A   L A+  GR  H       L   + + TAL+ MYS CG 
Sbjct: 130 ILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGC 189

Query: 140 MNKAMDFFWG-------------------------------MKERNVYTWTSVIGGLAMN 168
           +++A   F G                               M ERNV +WT+VI G A  
Sbjct: 190 VSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQM 249

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
               +++ +F  M+   V P+E+  ++ L  C  +G +E G E   +   ++G+   +  
Sbjct: 250 DRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG-EWIHNYIDKHGLSKIVPL 308

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
              L+D+Y + G++++AL+V   M  K     W ++++   ++
Sbjct: 309 NNALIDMYAKCGKIEKALEVFKNMEHKS-VITWTSMIDGLALH 350


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/463 (40%), Positives = 284/463 (61%), Gaps = 2/463 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G     + VFD I   + V  T+MIS  A+ G    A  +F + P R+  +W A+
Sbjct: 149 MYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTAL 208

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++G  Q G    +  LF+ M+   + + + + + SV+  C +L  L+ G+  H  +    
Sbjct: 209 ISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALG 268

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
            +  + +  ALVDMY+KC ++  A D F+ M  ++V +WTS+I G A +G  E++L L+ 
Sbjct: 269 FESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYD 328

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M  + ++PNEVTFV +L  C   GLV  GRE F SM  +Y I P L+HY CL+DL  R+
Sbjct: 329 EMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRS 388

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G LDEA ++++K+P KP    W +LL+AC  + N EMG   + ++++L+ ++   Y+LLS
Sbjct: 389 GHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLS 448

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDE-THPRYNEIEVML 358
           N+YA ++ W  V  VR++M +  V+K PG S I+  ++   F AG+   HP  NEI  +L
Sbjct: 449 NVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLL 508

Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
            ++   ++  GYV NT+ V+YDIE++EKE  L  HSE++A+A+GL+    G  IRIVKNL
Sbjct: 509 KDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNL 568

Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           R+C DCH+V K IS +  REI+VRD  R+HHFKEGKCSC  +W
Sbjct: 569 RICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 35/279 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q +  G  +  ++  T ++    KCG +  A ++FDEMP RD ++W ++L  + +   
Sbjct: 26  HSQIIKAGFDKSSLLSNT-LLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALI 84

Query: 70  SREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
            R  L + + M  HD ++ +      ++ AC+ LG L  G+  H     +       + +
Sbjct: 85  PRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKS 144

Query: 129 ALVDMYSKCGNMN-------------------------------KAMDFFWGMKERNVYT 157
           +L+DMY+KCG  +                               +AMD F     RN+++
Sbjct: 145 SLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFS 204

Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVR-PNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           WT++I GL  +G G  S  LF+ M++ G+   + +   SV+ GC  + L+E G++    +
Sbjct: 205 WTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ-IHGL 263

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
               G E  L     LVD+Y +   +  A D+  +MP K
Sbjct: 264 VIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  I +     +  L   L+D+Y KCG + +A+  F  M  R+  +W S++         
Sbjct: 26  HSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIP 85

Query: 172 EKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
            ++L + + M    G++P+   F  ++R C  +G +  G++ H   M   +  +  ++  
Sbjct: 86  RRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVK-- 143

Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
             L+D+Y + G+ D+A  V + +  K ++ +W ++++
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSILFK-NSVSWTSMIS 179


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 282/461 (61%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
            Y++ G +   +++FD +   DVV    ++S   +   +D A ++F+EMP ++ ++W  M
Sbjct: 342 FYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVM 401

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GY   G + +AL LF+ M+  +VK  + +    ++AC  LGAL  G+  H +I +   
Sbjct: 402 VSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGF 461

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           + + + G AL+ MY++CG + +A   F  M   +  +W ++I  L  +G G ++LELF  
Sbjct: 462 EGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M   G+ P+ ++F++VL  C   GLV+EG  +F+SM+R++GI P  +HY  L+DL GRAG
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
           R+ EA D+I  MP +P    W A+L+ CR   + E+G  A+ +L ++  ++ G Y+LLSN
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
            Y+ +  W     VR++M+ +GVKK PGCS IE   +VH F  GD  HP  +E+   L  
Sbjct: 642 TYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEM 701

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           +  +++  GYV +T  V++D+E  +KE  L  HSE++A+ FGL++L  G  + ++KNLR+
Sbjct: 702 VGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRI 761

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           C DCH     +SK   REI+VRD  RFHHFK+G+CSC  YW
Sbjct: 762 CDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 141/311 (45%), Gaps = 38/311 (12%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
           +KV D +   D +  T M+    + GDV  AR +F+E+  +  + WNAM++GY   G + 
Sbjct: 217 RKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAV 276

Query: 72  EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM----TVTLG 127
           EA  LF  M +  V L+E +  SVLSAC ++G    G+  H  I R +        + + 
Sbjct: 277 EAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVN 336

Query: 128 TALVDMYSKCGN-------------------------------MNKAMDFFWGMKERNVY 156
            ALV  YSKCGN                               ++KA++ F  M  +N  
Sbjct: 337 NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL 396

Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216
           +W  ++ G    G  E +L+LF+ M+   V+P + T+   +  C  +G ++ G++     
Sbjct: 397 SWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ-LHGH 455

Query: 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN-TE 275
             + G E        L+ +Y R G + EA  +   MP    + +W A+++A   + +  E
Sbjct: 456 IVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQHGHGRE 514

Query: 276 MGELASRKLVE 286
             EL  R + E
Sbjct: 515 ALELFDRMVAE 525



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 143/348 (41%), Gaps = 46/348 (13%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLF 77
           +P  V  T++++A A    +  A   FD +P   RD +  NA+++ YA+   +  A+ +F
Sbjct: 85  DPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 78  H-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA--HVYIERNRLKMTVTLGTALVDMY 134
             L+    ++ ++ S  ++LSA  HL  +     A  H  + ++     +++  ALV +Y
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALY 204

Query: 135 SKC----------------------------------GNMNKAMDFFWGMKERNVYTWTS 160
            KC                                  G++  A   F  +  +    W +
Sbjct: 205 MKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNA 264

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRRE 219
           +I G   +G   ++ ELF  M    V  +E TF SVL  C  VGL   G+  H   +R +
Sbjct: 265 MISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQ 324

Query: 220 YGIEP--WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
               P   L     LV  Y + G +  A  + + M +K    +W  +L+    Y  +   
Sbjct: 325 PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK-DVVSWNTILSG---YVESSCL 380

Query: 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
           + A     E+  KN  +++++ + Y      +  + +   M+++ VK 
Sbjct: 381 DKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKP 428


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/440 (40%), Positives = 283/440 (64%), Gaps = 2/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   ++++   A+   +  A+ +F+ +  ++ ++WNA++AG+A+ G+    + LF  M 
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQML 299

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               +    +  SVL AC   G+L+QG+W H ++ ++  +    +G  L+DMY+K G++ 
Sbjct: 300 RQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIK 358

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  + ++++ +W S+I G A +G G ++L+LF  M +A V+PNE+TF+SVL  C 
Sbjct: 359 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 418

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL++EG+ +F+ M++ + IE  + H+  +VDL GRAGRL+EA   I +MP+KP A  W
Sbjct: 419 HSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVW 477

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACRM+KN ++G  A+ ++ EL+  + G +VLLSNIYA +        VR++MK  
Sbjct: 478 GALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKES 537

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GVKK P CS +E++ EVH F A D++HP   EI+ M  +IS ++K  GYV +T+ V++ +
Sbjct: 538 GVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFM 597

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            ++++E  L  HSEK+A+AF ++    G+ IRI KN+R+C DCH   K  S+V  REIIV
Sbjct: 598 NQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIV 657

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD NRFHHF  G CSC+ YW
Sbjct: 658 RDTNRFHHFLHGMCSCRDYW 677



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 136/248 (54%), Gaps = 5/248 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+V    +++  AKCG ++ A+ +FD+MP +D ++W  +++GY+Q G++ EAL LF  
Sbjct: 137 EDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPK 196

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M     + NE ++ S+L A     +   GR  H +  +    M V +G++L+DMY++  +
Sbjct: 197 MLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAH 256

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           M +A   F  +  +NV +W ++I G A  G GE  + LF  M + G  P   T+ SVL  
Sbjct: 257 MREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-A 315

Query: 200 CCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           C   G +E+G+  H   ++   G +P       L+D+Y ++G + +A  V  ++ +K   
Sbjct: 316 CASSGSLEQGKWVHAHVIKS--GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDI 372

Query: 259 GAWGALLN 266
            +W ++++
Sbjct: 373 VSWNSIIS 380



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L+ CT+L  L QGR  H +I+ +  +  + L   +++MY+KCG++ +A D F  M  ++
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKD 170

Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
           + +WT +I G + +G   ++L LF  M   G +PNE T  S+L+          GR+   
Sbjct: 171 MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ-LH 229

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           +   +YG +  +     L+D+Y R   + EA  + N +  K +  +W AL+
Sbjct: 230 AFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNALI 279



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 32/169 (18%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +   +KVF  + + D+V   ++IS                             
Sbjct: 350 MYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS----------------------------- 380

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
             GYAQ G   EAL LF  M    V+ NE++ +SVL+AC+H G LD+G++    ++++++
Sbjct: 381 --GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKI 438

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           +  V     +VD+  + G +N+A  F   M  +     W +++G   M+
Sbjct: 439 EAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMH 487


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/444 (42%), Positives = 281/444 (63%), Gaps = 1/444 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNA 59
            Y   G +G  ++VFD +    DV+    +++   + G + +AR++FDEMP RD I+W+ 
Sbjct: 190 FYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWST 249

Query: 60  MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++ GY +  +   AL +F  M    V+ N+ ++V+ LSA   LG L+ G++ H  ++R+ 
Sbjct: 250 LVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSG 309

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           + + + +G ALVDMY+KCG +  A + F GM+ R+V+ W ++I GLA +G G  ++ELF 
Sbjct: 310 MPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFE 369

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
                G+ P  VTFV VL GC   GLV EGR +F  +  +Y IEP +EHYGC+VDL GRA
Sbjct: 370 RFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRA 429

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G + EA+++I  M + P    WG +L++C+ +   ++G     KL+EL+  + G YVLLS
Sbjct: 430 GLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLS 489

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IYA++  WD V  VR++M ++G  K  G S++E   +VH+F  GD  H    +I   L 
Sbjct: 490 GIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLD 549

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
            I++RL  AGYV + + V++DI EEEK   +  HSE++AIA+G I L+ G PIRIVKNLR
Sbjct: 550 MINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLR 609

Query: 420 VCWDCHDVTKMISKVFNREIIVRD 443
           VC DCH+ +KM++ VF REIIVRD
Sbjct: 610 VCGDCHEFSKMVTMVFQREIIVRD 633


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/454 (40%), Positives = 274/454 (60%), Gaps = 18/454 (3%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI--- 82
           Q A++   A+ G++D+AR++F  +  RD ++WN ++ G    G + EA  L   MQ+   
Sbjct: 425 QNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSP 484

Query: 83  -------------HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
                        H    N ++++++L  C  L A  +G+  H Y  R+ L+  + +G+A
Sbjct: 485 SPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSA 544

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRP 188
           LVDMY+KCG +  +   F  +  RNV TW  +I    M+G G++++ LF  M   G   P
Sbjct: 545 LVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATP 604

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           NEVTF++ L  C   GLV+ G E F  M R++G++P  + + C+VD+ GRAGRLDEA  +
Sbjct: 605 NEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSI 664

Query: 249 INKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
           I  M P +    AW +LL ACR+++N E+GE+A+ +L ELE      YVLL NIY+ +  
Sbjct: 665 ITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGM 724

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL 367
           WD+ + VR  M+ +GV K PGCS IE+D  +H F AG+ +HP   E+   +  +  R++ 
Sbjct: 725 WDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRR 784

Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDV 427
            GY  +T+ V++D++E+EK   L  HSEK+AIAFGL+    G  IR+ KNLRVC DCH+ 
Sbjct: 785 EGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEA 844

Query: 428 TKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            K +SK+  R+I++RD  RFHHF++G CSC  YW
Sbjct: 845 AKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 32/335 (9%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLFHLMQIH- 83
           +A++   A    V  AR++FD +PE  R    WNAM+ GYAQ G   EAL LF  M+   
Sbjct: 322 SALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEA 381

Query: 84  DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
               +E +M  VL AC            H Y+ +  +     +  AL+DMY++ G M+ A
Sbjct: 382 GCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVA 441

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR---------------- 187
              F  +  R+V +W ++I G  + G   ++ +L + M+                     
Sbjct: 442 RRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCM 501

Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           PN +T +++L GC  +     G+E H  ++R  + +E  +     LVD+Y + G L  + 
Sbjct: 502 PNNITLMTLLPGCAALAAPARGKEIHGYAVR--HALESDIAVGSALVDMYAKCGCLAASR 559

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL-----ETKNHGAYVLLSNI 301
            V +++P + +   W  L+ A  M+    +G+ A     E+      T N   ++     
Sbjct: 560 AVFDRLPRR-NVITWNVLIMAYGMHG---LGDEAVALFDEMAAGGEATPNEVTFIAALAA 615

Query: 302 YAESKNWDRVINVRQIM-KAKGVKKLPGCSVIEVD 335
            + S   DR + +   M +  GVK  P      VD
Sbjct: 616 CSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVD 650



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D+   +A++   AKCG +  +R +FD +P R+ I WN ++  Y   G   EA+ LF  
Sbjct: 536 ESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDE 595

Query: 80  MQI-HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKC 137
           M    +   NEV+ ++ L+AC+H G +D+G      +ER+  +K T  L   +VD+  + 
Sbjct: 596 MAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRA 655

Query: 138 GNMNKAMDFFWGMK--ERNVYTWTSVIGG 164
           G +++A      M+  E+ V  W+S++G 
Sbjct: 656 GRLDEAYSIITSMEPGEQQVSAWSSLLGA 684



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 126/269 (46%), Gaps = 26/269 (9%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAG---YAQCGKSRE 72
           +H P      A+++A A+CGD+D A  +F       RD +++N++++    + Q  ++ +
Sbjct: 95  LHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALD 154

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ---GRWAHVY------IERNRLKMT 123
           AL        HDV  +  ++VSVL AC+HL   D    GR AH +      ++  R +  
Sbjct: 155 ALRDMLAEGRHDV--SSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFP 212

Query: 124 VTLGTALVDMYSKCGNMNKAMDFF------WGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                AL+ MY++ G ++ A   F      +     +V TW ++I  L   G   +++E+
Sbjct: 213 FN---ALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEV 269

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
              M   GVRP+ VTF S L  C  + ++  GRE    + ++  +         LVD+Y 
Sbjct: 270 LYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYA 329

Query: 238 RAGRLDEALDVINKMPMKP-HAGAWGALL 265
              ++  A  V + +P      G W A++
Sbjct: 330 GNEKVASARRVFDMVPEPSRQLGMWNAMI 358


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 175/385 (45%), Positives = 264/385 (68%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY+  GC+   +++FDG+   DV    AM++  AK GDVD AR +F+ MPER+ I+W A+
Sbjct: 183 MYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAV 242

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AGYAQ  +  EA+ +F  MQ+ +V+ +E++M++ LSAC HLGAL+ G W H YI+++ L
Sbjct: 243 IAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGL 302

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              V L  AL+DMY+KCG + KA++ F  M+ ++V TWTS+I GLA++G G ++LE+FS 
Sbjct: 303 SKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSC 362

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++  ++PNE+TFV++L  CC VGLVE GR +F  M  +YGI+P ++HYGC++DL GRAG
Sbjct: 363 MERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAG 422

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L EA +++  MP + +A  WG+LL A R++ + E+G+ A + L+++E  N G Y LLSN
Sbjct: 423 FLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSN 482

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           IYA    W+    VR++M+  GVKK+PG S IEV+  VHEF AGD+ HP+   I  +L +
Sbjct: 483 IYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHPQSERIFEVLCK 542

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEE 385
           J+ + K+A YV   +  M +  +E 
Sbjct: 543 JNLQSKIAMYVQKEHVEMLESNKES 567



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 33/283 (11%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D +  +  I AC+  G    +  +F      D   +N ++   +    + EA+ L++ 
Sbjct: 70  DQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNR 129

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +   D++ +  S+  VL A   L A+  GR  H       L   + + TAL+ MYS CG 
Sbjct: 130 ILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGC 189

Query: 140 MNKAMDFFWG-------------------------------MKERNVYTWTSVIGGLAMN 168
           +++A   F G                               M ERNV +WT+VI G A  
Sbjct: 190 VSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQM 249

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
               +++ +F  M+   V P+E+  ++ L  C  +G +E G E   +   ++G+   +  
Sbjct: 250 DRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG-EWIHNYIDKHGLSKIVPL 308

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
              L+D+Y + G++++AL+V   M  K     W ++++   ++
Sbjct: 309 NNALIDMYAKCGKIEKALEVFKNMEHKS-VITWTSMIDGLALH 350


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 184/405 (45%), Positives = 271/405 (66%), Gaps = 4/405 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A+I   +KCG+++ A  +F+ +P +D I+WN ++ GY      +EAL LF  M       
Sbjct: 263 ALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 322

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
           N+V+M+S+L AC HLGA+D GRW HVYI++ RLK      +L T+L+DMY+KCG++  A 
Sbjct: 323 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKGVANASSLRTSLIDMYAKCGDIEAAH 381

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  +  +++ +W ++I G AM+G  + S ++FS M++ G+ P+++TFV +L  C   G
Sbjct: 382 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSG 441

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +++ GR  F SM ++Y + P LEHYGC++DL G +G   EA ++IN M M+P    W +L
Sbjct: 442 MLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 501

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L AC+M+ N E+GE  ++ L+++E +N G+YVLLSNIYA +  W+ V N R ++  KG+K
Sbjct: 502 LKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMK 561

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K+PGCS IE+D  VHEF  GD+ HPR  EI  ML E+   L+ AG+V +T+ V+ ++EEE
Sbjct: 562 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 621

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
            KE  L  HSEK+AIAFGLIS K G  + IVKNLRVC +CH+  K
Sbjct: 622 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 155/272 (56%), Gaps = 2/272 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G L    KVFD     DVV  TA+I   A  G ++ A+KMFDE+P +D ++WNAM
Sbjct: 135 MYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAM 194

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++GYA+ G  +EAL LF  M   +V+ +E +MV+V+SAC   G+++ GR  H +I+ +  
Sbjct: 195 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGF 254

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +  AL+D+YSKCG +  A   F G+  ++V +W ++IGG       +++L LF  
Sbjct: 255 GSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQE 314

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           M ++G  PN+VT +S+L  C  +G ++ GR  H    +R  G+         L+D+Y + 
Sbjct: 315 MLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKC 374

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
           G ++ A  V N +  K    +W A++    M+
Sbjct: 375 GDIEAAHQVFNSILHKS-LSSWNAMIFGFAMH 405



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 37/290 (12%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVD---LARKMFDEMPERDPIAWNAMLAGYAQ 66
           + Q +  G+H  +    + +I  C      D    A  +F+ + E + + WN M  G+A 
Sbjct: 10  HAQMIKTGLHNTNYAL-SKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 68

Query: 67  CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH-----------VYI 115
                 AL L+  M    +  N  +   +L +C    A  +G+  H           +Y+
Sbjct: 69  SSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 128

Query: 116 ERNRLKMTVTLG--------------------TALVDMYSKCGNMNKAMDFFWGMKERNV 155
             + + M V  G                    TAL+  Y+  G +  A   F  +  ++V
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDV 188

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
            +W ++I G A  G  +++LELF  M +  VRP+E T V+V+  C   G +E GR+   S
Sbjct: 189 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ-VHS 247

Query: 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
              ++G    L+    L+DLY + G L+ A  +   +P K    +W  L+
Sbjct: 248 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKD-VISWNTLI 296



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 43/255 (16%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           Y  K   G+     + +T++I   AKCGD++ A ++F+ +  +   +WNAM+ G+A  G+
Sbjct: 349 YIDKRLKGVANASSL-RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 407

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGT 128
           +  +  +F  M+ + ++ ++++ V +LSAC+H G LD GR  H++    +  KMT  L  
Sbjct: 408 ADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR--HIFRSMTQDYKMTPKLE- 464

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
                                        +  +I  L  +G  +++ E+ + M+   + P
Sbjct: 465 ----------------------------HYGCMIDLLGHSGLFKEAEEMINTME---MEP 493

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALD 247
           + V + S+L+ C + G VE G     ++ +   IEP     Y  L ++Y  AGR +E  +
Sbjct: 494 DGVIWCSLLKACKMHGNVELGESFAQNLIK---IEPENPGSYVLLSNIYATAGRWNEVAN 550

Query: 248 ---VINKMPMKPHAG 259
              ++N   MK   G
Sbjct: 551 TRALLNDKGMKKVPG 565


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/443 (44%), Positives = 276/443 (62%), Gaps = 4/443 (0%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D   + A+++   KC  ++    +F  M ER D ++WN+M++GY   G   +A+ L   M
Sbjct: 693  DNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM 752

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                 KL+  +  +VLSAC  +  L++G   H    R  L+  V +G+ALVDMY+KCG +
Sbjct: 753  MQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKI 812

Query: 141  NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            + A  FF  M  RN+Y+W S+I G A +G G+K+L++F+ MKQ G  P+ VTFV VL  C
Sbjct: 813  DYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSAC 872

Query: 201  CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              VGLV+EG +HF SM   YG+ P +EH+ C+VDL GRAG + +  D I  MPM P+   
Sbjct: 873  SHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILI 932

Query: 261  WGALLNAC--RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
            W  +L AC     +NTE+G+ A++ L+ELE +N   YVLLSN++A   NW+ V+  R  M
Sbjct: 933  WRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAM 992

Query: 319  KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
            +   VKK  GCS + +   VH F AGD+THP   +I   L E+  +++ AGYV  T   +
Sbjct: 993  RKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYAL 1052

Query: 379  YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            YD+E E KE+ L  HSEK+AIAF +++ K  +PIRI+KNLRVC DCH   K ISK+  R+
Sbjct: 1053 YDLELENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQ 1111

Query: 439  IIVRDRNRFHHFKEGKCSCKGYW 461
            II+RD NRFHHF  G CSC  YW
Sbjct: 1112 IILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 132/253 (52%), Gaps = 2/253 (0%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
            G+ +  +    A+++   KC  +D A  +F  MP +D ++WN+M++G     +  EA+ 
Sbjct: 484 SGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVS 543

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
            FH M+ + +  +  S++S LS+C+ LG L  GR  H    +  L + V++  AL+ +Y+
Sbjct: 544 CFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYA 603

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE-KSLELFSLMKQAGVRPNEVTFV 194
           +  ++N+    F+ M E +  +W S IG LA   A   ++L+ F  M QAG RPN VTF+
Sbjct: 604 ETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFI 663

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           ++L       ++  G +   ++  +Y +         L+  YG+  ++++   + ++M  
Sbjct: 664 NILAAVSSFSVLGLGHQ-IHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSE 722

Query: 255 KPHAGAWGALLNA 267
           +    +W ++++ 
Sbjct: 723 RRDEVSWNSMISG 735



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 138/296 (46%), Gaps = 13/296 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV     +I+   + G++  ARK+FDEMP+++ ++W+ +++GY Q     EA  LF  + 
Sbjct: 174 DVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVI 233

Query: 82  IHDVKLNEVSMVSVLSACTHLGA--LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC-G 138
              +  N  ++ S L AC   G+  +  G   H +I +      + L   L+ MYS C G
Sbjct: 234 SSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSG 293

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV----RPNEVTFV 194
           +++ A   F  +K RN  TW S+I      G    + +LFS+M+  GV    RPNE T  
Sbjct: 294 SIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLC 353

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDVINK 251
           S++   C   L + G    + M        +L        LV+ + R G +D A  +  +
Sbjct: 354 SLVTAAC--SLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQ 411

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
           M  +      G ++   R ++  E  ++  +++ +L   N  + V+L + + E  N
Sbjct: 412 MYDRNAVTMNGLMVGLARQHQGEEAAKVF-KEMKDLVEINSESLVVLLSTFTEFSN 466



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DVV  +A++   AKCG +D A + F+ MP R+  +WN+M++GYA+ G  ++AL +F  
Sbjct: 793 ESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTR 852

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI--ERNRLKMTVTLGTALVDMYSKC 137
           M+ H    + V+ V VLSAC+H+G +D+G + H     E   L   +   + +VD+  + 
Sbjct: 853 MKQHGQSPDHVTFVGVLSACSHVGLVDEG-YKHFKSMGEVYGLSPRIEHFSCMVDLLGRA 911

Query: 138 GNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           G++ K  DF   M  + N+  W +V+G 
Sbjct: 912 GDVKKIEDFIKTMPMDPNILIWRTVLGA 939



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H+ + +      V     L+++Y + GN+  A   F  M ++N+ +W+ +I G   N   
Sbjct: 163 HLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMP 222

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           +++  LF  +  +G+ PN     S LR C
Sbjct: 223 DEACSLFKGVISSGLLPNHFAVGSALRAC 251


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/487 (40%), Positives = 288/487 (59%), Gaps = 51/487 (10%)

Query: 11  CQKVFD--GIH--------EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           C+   D  GIH        E D   Q A++   ++ G +++AR +F  M  +D ++WN M
Sbjct: 403 CESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTM 462

Query: 61  LAGYAQCGKSREALHLFHLMQ------------------IHDVKLNEVSMVSVLSACTHL 102
           + GY  CG+  +AL+L H MQ                     +K N V++++VL  C  L
Sbjct: 463 ITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAAL 522

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
            AL +G+  H Y  +  L   V +G+ALVDMY+KCG +N +   F  M  RNV TW  +I
Sbjct: 523 AALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLI 582

Query: 163 GGLAMNGAGEKSLELFSLMKQAG-----VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
               M+G GE++L+LF  M + G     +RPNEVT++++       G+V+EG   F +M+
Sbjct: 583 MAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMK 642

Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK-PHAGAWGALLNACRMYKNTEM 276
            ++GIEP  +HY CLVDL GR+G+++EA ++I  MP       AW +LL AC++++N E+
Sbjct: 643 AKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEI 702

Query: 277 GELASRKLVELETKNHGAYVLLSNI--YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEV 334
           GE+A++ L          +VL  N+  Y   ++      + + MK KGV+K PGCS IE 
Sbjct: 703 GEIAAKNL----------FVLDPNVLDYGTKQSM-----LGRKMKEKGVRKEPGCSWIEH 747

Query: 335 DREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHS 394
             EVH+F AGD +HP+  E+   L  +S R+K  GYV +T+ V++++ EEEKE  LC HS
Sbjct: 748 GDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHS 807

Query: 395 EKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGK 454
           E++AIAFGL++   G  IR+ KNLRVC DCH  TK ISK+ +REII+RD  RFHHF+ G 
Sbjct: 808 ERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGT 867

Query: 455 CSCKGYW 461
           CSC  YW
Sbjct: 868 CSCGDYW 874



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 7/241 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           ++++   KCGD+D AR++FDE+  RD ++WN+M+    +  +   A+HLF LM + +V  
Sbjct: 125 SLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGP 184

Query: 88  NEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
              ++VSV  AC++L   L  G+  H ++ RN    T T   ALV MY+K G + +A   
Sbjct: 185 TSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFT-NNALVTMYAKLGRVYEAKTL 243

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F    ++++ +W ++I  L+ N   E++L    +M Q+GVRPN VT  SVL  C  + ++
Sbjct: 244 FDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEML 303

Query: 207 EEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
             G+E H   +     IE      GC LVD+Y    + ++   V + M  +     W A+
Sbjct: 304 GCGKEIHAFVLMNNDLIEN--SFVGCALVDMYCNCKQPEKGRLVFDGM-FRRTIAVWNAM 360

Query: 265 L 265
           +
Sbjct: 361 I 361



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 151/323 (46%), Gaps = 19/323 (5%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
             A+++  AK G V  A+ +FD   ++D ++WN +++  +Q  +  EAL   H+M    V
Sbjct: 224 NNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGV 283

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           + N V++ SVL AC+HL  L  G+  H ++   N L     +G ALVDMY  C    K  
Sbjct: 284 RPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGR 343

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGC--C 201
             F GM  R +  W ++I G   N    +++ELF  ++ + G+ PN VT  SVL  C  C
Sbjct: 344 LVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRC 403

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              L +EG     S   ++G E        L+D+Y R GR++ A  +   M  K    +W
Sbjct: 404 ESFLDKEG---IHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIV-SW 459

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             ++     Y      + A   L +++       +   + Y ++KN+    N   +M   
Sbjct: 460 NTMITG---YVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTV- 515

Query: 322 GVKKLPGCSVIEV---DREVHEF 341
               LPGC+ +      +E+H +
Sbjct: 516 ----LPGCAALAALGKGKEIHAY 534



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 52  RDPIAWNAMLAGYAQCGKS-REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           R P  W + L    Q   +  +A+  +  M    V  +  +  +VL A   +  L+ G+ 
Sbjct: 47  RLPSEWVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQ 106

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
            H ++ +    +   +  +LV+MY KCG+++ A   F  +  R+  +W S+I        
Sbjct: 107 LHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEE 166

Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCC--VVGLVEEGREHFDSMRREYGIEPWLEH 228
            E ++ LF LM    V P   T VSV   C   + GL+   + H   +R       W   
Sbjct: 167 WELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRN----GDWRTF 222

Query: 229 Y-GCLVDLYGRAGRLDEA 245
               LV +Y + GR+ EA
Sbjct: 223 TNNALVTMYAKLGRVYEA 240



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 39/172 (22%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ GCL                               +L+R +F++M  R+ I WN +
Sbjct: 553 MYAKCGCL-------------------------------NLSRTVFEQMSVRNVITWNVL 581

Query: 61  LAGYAQCGKSREALHLFHLM-----QIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVY 114
           +  Y   GK  EAL LF  M        +++ NEV+ +++ ++ +H G +D+G    +  
Sbjct: 582 IMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTM 641

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGG 164
             ++ ++ T      LVD+  + G + +A +    M    + V  W+S++G 
Sbjct: 642 KAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGA 693


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/441 (42%), Positives = 275/441 (62%), Gaps = 6/441 (1%)

Query: 27  TAMISACAKC-GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHD 84
           + +I   +KC G +   RK+F+E+   D + WN M++G++     S + L  F  MQ + 
Sbjct: 282 SGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNG 341

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYSKCGNMNKA 143
            + ++ S V V SAC++L +   G+  H    ++ +    V++  ALV MYSKCGN++ A
Sbjct: 342 FRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDA 401

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  M E N  +  S+I G A +G   +SL LF LM +  + PN +TF++VL  C   
Sbjct: 402 RRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHT 461

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G VEEG+++F+ M+  + IEP  EHY C++DL GRAG+L EA  +I  MP  P +  W  
Sbjct: 462 GKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWAT 521

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR + N E+   A+ + + LE  N   YV+LSN+YA +  W+    V+++M+ +GV
Sbjct: 522 LLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGV 581

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY---D 380
           KK PGCS IE+D++VH F A D +HP   EI V +G++ +++K AGYV +    +    +
Sbjct: 582 KKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEE 641

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +E +E+E  L  HSEK+A+AFGLIS +EGVPI +VKNLR+C DCH+  K+IS +  REI 
Sbjct: 642 VEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREIT 701

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRD +RFH FKEG CSC+ YW
Sbjct: 702 VRDTHRFHCFKEGHCSCRDYW 722



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 14/280 (5%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G L   Q  F     P+V     +I+A AK   + +AR++FDE+P+ D +++N +
Sbjct: 53  LYSKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTL 112

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG--RWAHVYIERN 118
           +A YA  G+    L LF  ++   + L+  ++  V++AC      D G  R  H ++   
Sbjct: 113 IAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGD----DVGLVRQLHCFVVVC 168

Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175
                 ++  A++  YS+ G +++A   F  M E   R+  +W ++I     +  G +++
Sbjct: 169 GHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAV 228

Query: 176 ELFSLMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
            LF  M + G++ +  T  SVL    CV  LV  G   F  M  + G          L+D
Sbjct: 229 GLFREMVRRGLKVDMFTMASVLTAFTCVKDLV--GGRQFHGMMIKSGFHGNSHVGSGLID 286

Query: 235 LYGR-AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
           LY + AG + E   V  ++   P    W  +++   +Y++
Sbjct: 287 LYSKCAGSMVECRKVFEEI-TAPDLVLWNTMISGFSLYED 325



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 12/161 (7%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V    A+++  +KCG+V  AR++FD MPE + ++ N+M+AGYAQ G   E+L LF LM  
Sbjct: 382 VSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLE 441

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
            D+  N ++ ++VLSAC H G +++G ++ ++  ER  ++      + ++D+  + G + 
Sbjct: 442 KDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLK 501

Query: 142 KA------MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
           +A      M F  G  E     W +++G    +G  E +++
Sbjct: 502 EAERIIETMPFNPGSIE-----WATLLGACRKHGNVELAVK 537


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 270/442 (61%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+V   A+I+   KCG +  A  +F  MPE++ I+W+ M+A + Q   + EAL  F L
Sbjct: 174 DSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKL 233

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   ++L+ ++ VSVL A T +GAL+ G+  HV I    L  ++ +G  LV+MY KCG+
Sbjct: 234 MQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGS 293

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            + A D F  M E+NV +W +++     NG   ++L LF  M   GVRPN++TFV++L  
Sbjct: 294 PDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYC 353

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G  ++   HF  MR+++GI P   H+GCL+D+ GR+G+L+EA ++I  MP+   A 
Sbjct: 354 CSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAV 413

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            W +LL AC  +K+ +    A+ +  + E +   AY++LSN+YA  K WD    VR+ M+
Sbjct: 414 LWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRME 473

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             GV+K  G S IE+D++VHEF AGD  HP  + I   L  +   +++ GY  +   V++
Sbjct: 474 QAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIH 533

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            +EEEEK++ L  HSEK+A+AFG+ S     P+ IVKNLRVC DCH   K IS V  R I
Sbjct: 534 SMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRI 593

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            VRD NRFHHF  G+CSC  YW
Sbjct: 594 TVRDSNRFHHFDRGECSCGDYW 615



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 130/240 (54%), Gaps = 4/240 (1%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++    KCG +  A+++FD M  ++  +W  ++AG+ Q G+  EA+ LFH M       +
Sbjct: 82  LVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPD 141

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
            V+++  + +C    AL QGR  H       +   +    A+++MY KCG++ +A   F 
Sbjct: 142 RVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFT 201

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M E+NV +W+++I     N   +++L  F LM+Q G+  + +T+VSVL     VG +E 
Sbjct: 202 RMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALEL 261

Query: 209 GREHFDSMRREY-GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G+     +R  Y G++  +     LV++YG+ G  D+A DV + M ++ +  +W A+L A
Sbjct: 262 GKAL--HVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSM-VEKNVVSWNAMLAA 318



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 99  CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158
           C    AL++GR  H +++   L     L   LVDMY KCG++ +A   F  M+ +NV++W
Sbjct: 51  CAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSW 110

Query: 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
           T ++ G   +G G ++++LF  M Q G  P+ V  +  +  C     + +GRE   S   
Sbjct: 111 TMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGRE-IHSAAA 169

Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
             G++  L     ++++YG+ G + EA  V  +MP K +  +W  ++ A
Sbjct: 170 SCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEK-NVISWSTMIAA 217


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/444 (44%), Positives = 275/444 (61%), Gaps = 5/444 (1%)

Query: 22   DVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D     A++S   KCG+++   K+F  M E RD ++WN+M++GY       +A+ L   M
Sbjct: 1097 DTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFM 1156

Query: 81   QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                 +L+  +  +VLSAC  +  L++G   H    R  ++  V +G+ALVDMYSKCG +
Sbjct: 1157 MQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRI 1216

Query: 141  NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT-FVSVLRG 199
            + A  FF  M  RNVY+W S+I G A +G GEK+L+LF+ M   G  P+ V   + VL  
Sbjct: 1217 DYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSA 1276

Query: 200  CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
            C  VG VEEG EHF SM   Y + P +EH+ C+VDL GRAG+LDE  D IN MPMKP+  
Sbjct: 1277 CSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVL 1336

Query: 260  AWGALLNAC--RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
             W  +L AC     +NTE+G  A+  L+ELE +N   YVLL+N+YA  + W+ V   R  
Sbjct: 1337 IWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXA 1396

Query: 318  MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
            MK   VKK  GCS + +   VH F AGD+ HP  + I   L E++R+++ AGY+  T   
Sbjct: 1397 MKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYA 1456

Query: 378  MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
            ++D+E E KE+ L  HSEK+A+AF +++ +  +PIRI+KNLRVC DCH     ISK+  R
Sbjct: 1457 LFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGR 1515

Query: 438  EIIVRDRNRFHHFKEGKCSCKGYW 461
            +I++RD NRFHHF++GKCSC  YW
Sbjct: 1516 QIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 13/293 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           ++     +I+   + GD+  A+K+FDEM  R+ + W  +++GY Q GK  EA   F  M 
Sbjct: 578 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 637

Query: 82  IHDVKLNEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC-G 138
                 N  +  S L AC   G      G   H  I + R    V +   L+ MY  C  
Sbjct: 638 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 697

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV----RPNEVTFV 194
           + N A   F  +  RN  +W S+I   +  G    + +LFS M++ G+    +PNE TF 
Sbjct: 698 SANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFG 757

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALDVINK 251
           S++   C    V+ G    + M        +L+       LV  + R G  D+A ++  +
Sbjct: 758 SLITAAC--SSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQ 815

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304
           M ++      G ++   +  K  E       ++ +L   N  +YV+L + ++E
Sbjct: 816 MGVRNVVSMNGLMVGLVKQ-KQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSE 867



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 5/149 (3%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            E DVV  +A++   +KCG +D A + F+ MP R+  +WN+M++GYA+ G   +AL LF  
Sbjct: 1197 ESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTR 1256

Query: 80   MQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHV--YIERNRLKMTVTLGTALVDMYSK 136
            M +     + V+ ++ VLSAC+H+G +++G + H     E  RL   V   + +VD+  +
Sbjct: 1257 MMLDGQPPDHVAPLLGVLSACSHVGFVEEG-FEHFKSMSEVYRLSPRVEHFSCMVDLLGR 1315

Query: 137  CGNMNKAMDFFWGMKER-NVYTWTSVIGG 164
             G +++  DF   M  + NV  W +V+G 
Sbjct: 1316 AGKLDEVGDFINSMPMKPNVLIWRTVLGA 1344



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 121/252 (48%), Gaps = 2/252 (0%)

Query: 17   GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
            G+++  V     +++  AK G +  A  +F+ M E+D ++WN++++G  Q   S +A   
Sbjct: 889  GLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAES 948

Query: 77   FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
            F  M+      +  +++S LS+C  LG +  G   H    +  L   V++  AL+ +Y++
Sbjct: 949  FLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAE 1008

Query: 137  CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG-EKSLELFSLMKQAGVRPNEVTFVS 195
             G   + +  F  M E +  +W SVIG L+ + A   ++++ F  M + G   + VTF++
Sbjct: 1009 TGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFIN 1068

Query: 196  VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
            +L     + L  E      ++  +Y +         L+  YG+ G ++E   +  +M   
Sbjct: 1069 ILSAVSSLSL-HEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSET 1127

Query: 256  PHAGAWGALLNA 267
                +W ++++ 
Sbjct: 1128 RDEVSWNSMISG 1139



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 41/272 (15%)

Query: 2    YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
            +A  G     + +F+ +   +VV    ++    K    + A K+F EM +          
Sbjct: 800  FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL--------- 850

Query: 62   AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW----AHVYIER 117
                                   V +N  S V +LSA +    L++GR      H ++ R
Sbjct: 851  -----------------------VGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIR 887

Query: 118  NRLK-MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176
              L    V +G  LV+MY+K G +  A   F  M E++  +W S+I GL  N   E + E
Sbjct: 888  TGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAE 947

Query: 177  LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDL 235
             F  M++ G  P+  T +S L  C  +G +  G + H D ++   G++  +     L+ L
Sbjct: 948  SFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK--LGLDTDVSVSNALLAL 1005

Query: 236  YGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            Y   G   E L V + MP      +W +++ A
Sbjct: 1006 YAETGCFTECLKVFSLMPEYDQV-SWNSVIGA 1036



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 21/261 (8%)

Query: 22  DVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           DVV    +IS    C D  + AR +FD +  R+ I+WN++++ Y++ G    A  LF  M
Sbjct: 681 DVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM 740

Query: 81  QIH----DVKLNEVSMVSVLS-ACTH----LGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           Q        K NE +  S+++ AC+     L  L+Q       +E++     + +G+ALV
Sbjct: 741 QKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQ---MLARVEKSGFLQDLYVGSALV 797

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
             +++ G  + A + F  M  RNV +   ++ GL     GE + ++F  MK   V  N  
Sbjct: 798 SGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL-VGINSD 856

Query: 192 TFVSVLRGCCVVGLVEEGRE-----HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           ++V +L       ++EEGR      H   +R            G LV++Y ++G + +A 
Sbjct: 857 SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG-LVNMYAKSGAIADAC 915

Query: 247 DVINKMPMKPHAGAWGALLNA 267
            V   M  K    +W +L++ 
Sbjct: 916 SVFELMVEKDSV-SWNSLISG 935


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/436 (41%), Positives = 269/436 (61%), Gaps = 2/436 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++ A AK      AR +FDEMP RD ++W ++L G A+      AL ++  M    V  
Sbjct: 79  ALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVGP 138

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +E ++ + LS+C    AL+ GR  H    R  L   +++G +LV MY+K G++ +A   F
Sbjct: 139 DEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAKKVF 198

Query: 148 WGMK-ER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
              + +R +  TWT++I G A NG G +SLE+++ M ++G RP+ VTF+ +L  C   GL
Sbjct: 199 DATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSHAGL 258

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           V+ GR HF SM+ E+GI P  +HY C+VDL GRAGRLDEA+D++N+   +  A  W ALL
Sbjct: 259 VDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKALL 318

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR ++N E+ E A+  +  L+  +   YV+LSN+Y+ +  W  V  VR  MKA+G+ K
Sbjct: 319 AACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGRWGDVARVRTSMKARGITK 378

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PGCS +  +   H F+  D  HPR  E+   + E++ R++  GYVA+T   + D   E 
Sbjct: 379 EPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQGYVADTAWALQDEGPEG 438

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           +E  L  HSE++A+AFGL+++  G PIR+ KNLRVC DCH   KM+++ + REI++RD N
Sbjct: 439 REKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAIKMVAQAYGREIVLRDSN 498

Query: 446 RFHHFKEGKCSCKGYW 461
            FHH K+G CSC  YW
Sbjct: 499 CFHHMKDGACSCGDYW 514



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 5/197 (2%)

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           +A+NA ++  ++ G  + AL L H M+    + +E ++   L++   L         H  
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALLRLPADA--LHSL 64

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           + R  L   + +  ALVD Y+K      A   F  M  R+V +WTS++ GLA + + + +
Sbjct: 65  LLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSA 124

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLV 233
           L+++  M  AGV P+E    + L  C     +E GR  H  ++R    ++P+L     LV
Sbjct: 125 LQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVR--LALDPFLSVGNSLV 182

Query: 234 DLYGRAGRLDEALDVIN 250
            +Y + G L EA  V +
Sbjct: 183 SMYAKTGSLGEAKKVFD 199



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 9/134 (6%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           +P +    +++S  AK G +  A+K+FD   +   DPI W A++ GYAQ G+ RE+L ++
Sbjct: 172 DPFLSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIY 231

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG----TALVDM 133
             M     + + V+ + +L AC+H G +D GR    +    + +  +  G      +VD+
Sbjct: 232 ADMVRSGCRPDYVTFIGLLFACSHAGLVDAGR---AHFRSMQAEHGIAPGADHYACMVDL 288

Query: 134 YSKCGNMNKAMDFF 147
             + G +++AMD  
Sbjct: 289 LGRAGRLDEAMDLL 302


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/445 (41%), Positives = 287/445 (64%), Gaps = 3/445 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV+  T ++   +  G V +AR++FD+MP RD +AWNAM++ ++Q G  +EAL  ++
Sbjct: 136 YDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYN 195

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+  +V ++  ++V ++S+C HLGAL+ G   H +   N L  ++ +G AL+DMY+KCG
Sbjct: 196 QMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCG 255

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++++A+  F  M+ ++++TW S+I G  ++G G +++  F  M +A ++PN VTF+ +L 
Sbjct: 256 SLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLC 315

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           GC   GLV+EG ++F+ M  ++ ++P ++HYGCLVDLYGRAG+LD+AL++++        
Sbjct: 316 GCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSV 375

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL +C+++KN  +GE+A  +L EL   + G  +LL+ IYA  K+   V  +R+++
Sbjct: 376 -LWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMI 434

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K++G K  PG S IE+  +VH+F   D++H    E+   L E+  +    GYV + +   
Sbjct: 435 KSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISS 494

Query: 379 YD-IEEEEKEDTLCK-HSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
            D +   E   T C  HSEK+AIAFGL    +G  IRIVKNLRVC DCH   K +S  FN
Sbjct: 495 LDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFN 554

Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
           REIIVRDR RFHHFK G+CSC  YW
Sbjct: 555 REIIVRDRVRFHHFKGGECSCNDYW 579



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 2/225 (0%)

Query: 32  ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
           A +  G +  A+ +F +M      AWN+++ G+AQ     +A+  ++ M      + +  
Sbjct: 47  AISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTF 106

Query: 92  MVS-VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
             S VL AC  + A  + +  H  + R      V + T LV  YS  G +  A   F  M
Sbjct: 107 TFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKM 166

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
             R++  W ++I   +  G  +++L+ ++ M+   V  +  T V ++  C  +G +  G 
Sbjct: 167 PARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGV 226

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           +      RE G++  L     L+D+Y + G LD+A+ + ++M  K
Sbjct: 227 Q-MHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRK 270


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 175/435 (40%), Positives = 269/435 (61%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA +   AKC  +  A  +F+ MPE+  + W+++ AG+ Q G   E L LF   Q   ++
Sbjct: 196 TAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQ 255

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L E ++ S+LS C  L  + +G   H  I ++     + + T+LVD+Y+KCG + K+ + 
Sbjct: 256 LTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEV 315

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M+E+NV  W ++I   + +    +++ LF  M+Q G+ PNEVT++S+L  C   GLV
Sbjct: 316 FADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLV 375

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           EEGR +F+ +  +   EP + HY C+VD+ GR+G+ DEA  +++KMP +P A  WG+LL 
Sbjct: 376 EEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLG 435

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           + R++KN  +  +A+ +L  LE +N G +VLLSN+YA S NW+ V+  R+ ++  G KK 
Sbjct: 436 SSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKE 495

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            G S IE   ++H F AG+  HP   ++   L EI   ++   + ANT   ++D+  ++K
Sbjct: 496 MGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQK 555

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E+ L  HSEK+A AFGLISL   +PI I KNLR+C DCH   K++S +  R++IVRD NR
Sbjct: 556 EELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINR 615

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  +W
Sbjct: 616 FHHFKDGSCSCGDFW 630



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 2/244 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V    +I+   KCG  D AR++FD M  R  I+WN M+AGY    +  EAL LF  M 
Sbjct: 90  DTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMH 149

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               ++ E ++ S L AC    A+ + +  H    +  L  +  +GTA +D+Y+KC  + 
Sbjct: 150 REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIK 209

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  M E+   TW+S+  G   NG  E+ L LF   ++ G++  E T  S+L  C 
Sbjct: 210 DACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCA 269

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            + L+ EG +   ++  ++G    L     LVD+Y + G+++++ +V   M  K +   W
Sbjct: 270 SLALIIEGTQ-VHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEK-NVVLW 327

Query: 262 GALL 265
            A++
Sbjct: 328 NAMI 331


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/442 (40%), Positives = 279/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  +   ++++   AK  ++  AR++FD +PERD ++  A+++GYAQ G   EAL LF  
Sbjct: 143 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ 202

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +    ++ N V+  ++++A + L +LD G+  H  I R  L   V L  +L+DMYSKCG 
Sbjct: 203 LYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGK 262

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  +   F  M ER+V +W +++ G   +G G + + LF  + +  V+P+ VT ++VL G
Sbjct: 263 LLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSG 321

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG + FD++ +E        HYGC++DL GR+GRL++AL++I  MP +    
Sbjct: 322 CSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPS 381

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WG+LL ACR++ N  +GEL ++KL+E+E +N G YV+LSNIYA +  W  V  VR++M 
Sbjct: 382 IWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLML 441

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            K V K PG S I +D+ +H F + +  HP   +I   + EI   +K AG+V + + V++
Sbjct: 442 EKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLH 501

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+++E+KE  L  HSEK+AI FGL++   G+ IR++KNLR+C DCH+  K +SKV+ REI
Sbjct: 502 DVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREI 561

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            +RD+NRFH    G C+C  YW
Sbjct: 562 SLRDKNRFHLLTHGNCTCGDYW 583



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 139/248 (56%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           + P V   T +++   +CG +D AR + D MPER  ++W  M++GY+Q  +  EAL LF 
Sbjct: 41  YRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFI 100

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M       NE ++ +VL++C+   ++ QG+  H  + +   +  + +G++L+DMY+K  
Sbjct: 101 KMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSE 160

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+ +A   F  + ER+V + T++I G A  G  E++L+LF  +   G++ N VTF +++ 
Sbjct: 161 NIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 220

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               +  ++ G++ H   +R+E      L++   L+D+Y + G+L  +  V + M ++  
Sbjct: 221 ALSGLASLDYGKQVHALILRKELPFFVALQN--SLIDMYSKCGKLLYSRRVFDNM-LERS 277

Query: 258 AGAWGALL 265
             +W A+L
Sbjct: 278 VVSWNAML 285



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           + ++AC    AL +GR  H  +   R +  V LGT LV MY +CG ++ A +    M ER
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V +WT++I G +      ++L+LF  M +AG  PNE T  +VL  C     + +G++  
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ-V 133

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            S+  +   E  +     L+D+Y ++  + EA  V + +P
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
 gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
          Length = 458

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/429 (42%), Positives = 271/429 (63%), Gaps = 1/429 (0%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           AKCGD+  ARK+FD    +    W +++ GY   G   EAL LF  +    +K N  ++ 
Sbjct: 30  AKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLLKTAIKPNGATLA 89

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           ++LSAC  LG+LD G+    YI  N  +    + T+L+ M+SKCG++ KA+  F  + ++
Sbjct: 90  TILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVFERISDK 149

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
           ++  W+S+I G A++G  E++L LF  +++   ++P+ V F S+L  C  VGLVE+G + 
Sbjct: 150 DLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLVEDGLKF 209

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
           F SM++++GI P +EHY CLVDL GRAG+ + AL  I  MP+K  A  W   L+AC  + 
Sbjct: 210 FKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVKLQAQVWAPFLSACTKHC 269

Query: 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVI 332
           N E+GELA+RKL+ +   +H  YVL++N+Y     W      R +M  +G+ K PG S +
Sbjct: 270 NLELGELAARKLLYMNPGSHANYVLMANLYTSMGKWKEAAVTRSLMIDRGLVKAPGWSQV 329

Query: 333 EVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCK 392
           E++  VH F AGD +H +  +I   L EI+ +L  AGYV  T+ V++D+E EEKE+ L  
Sbjct: 330 EINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLAEAGYVPETDTVIHDLEREEKEEALKV 389

Query: 393 HSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
           HSE++AIAFGLIS + G  +RI+KN R C DCH   K ISK+  R +IVRD +RFHHF+ 
Sbjct: 390 HSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSALKFISKITGRHLIVRDGSRFHHFES 449

Query: 453 GKCSCKGYW 461
           GKC+CK +W
Sbjct: 450 GKCTCKDFW 458



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 83/148 (56%), Gaps = 6/148 (4%)

Query: 3   AELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A+LG L   +++ + I     + D   QT++I   +KCG +  A  +F+ + ++D  AW+
Sbjct: 96  ADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVFERISDKDLAAWS 155

Query: 59  AMLAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           +M+ GYA  G + EAL LFH +++I ++K + V   S+L AC+H+G ++ G      +++
Sbjct: 156 SMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLVEDGLKFFKSMQK 215

Query: 118 N-RLKMTVTLGTALVDMYSKCGNMNKAM 144
           +  +  +V     LVD+  + G    A+
Sbjct: 216 DFGIVPSVEHYMCLVDLLGRAGQFELAL 243



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
           L   L+ MY+KCG++  A   F     + V+ WTS+IGG    G   ++L LF  + +  
Sbjct: 21  LDNLLLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLLKTA 80

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           ++PN  T  ++L  C  +G ++ G+E  +      G +   +    L+ ++ + G + +A
Sbjct: 81  IKPNGATLATILSACADLGSLDMGKE-IEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKA 139

Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303
           + V  ++  K  A AW +++N   ++   E       K++E++     A V  S + A
Sbjct: 140 ISVFERISDKDLA-AWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLA 196


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/442 (40%), Positives = 279/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  +   ++++   AK  ++  AR++FD +PERD ++  A+++GYAQ G   EAL LF  
Sbjct: 175 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ 234

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +    ++ N V+  ++++A + L +LD G+  H  I R  L   V L  +L+DMYSKCG 
Sbjct: 235 LYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGK 294

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  +   F  M ER+V +W +++ G   +G G + + LF  + +  V+P+ VT ++VL G
Sbjct: 295 LLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSG 353

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG + FD++ +E        HYGC++DL GR+GRL++AL++I  MP +    
Sbjct: 354 CSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPS 413

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WG+LL ACR++ N  +GEL ++KL+E+E +N G YV+LSNIYA +  W  V  VR++M 
Sbjct: 414 IWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLML 473

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
            K V K PG S I +D+ +H F + +  HP   +I   + EI   +K AG+V + + V++
Sbjct: 474 EKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLH 533

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+++E+KE  L  HSEK+AI FGL++   G+ IR++KNLR+C DCH+  K +SKV+ REI
Sbjct: 534 DVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREI 593

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            +RD+NRFH    G C+C  YW
Sbjct: 594 SLRDKNRFHLLTHGNCTCGDYW 615



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 139/248 (56%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           + P V   T +++   +CG +D AR + D MPER  ++W  M++GY+Q  +  EAL LF 
Sbjct: 73  YRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFI 132

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M       NE ++ +VL++C+   ++ QG+  H  + +   +  + +G++L+DMY+K  
Sbjct: 133 KMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSE 192

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+ +A   F  + ER+V + T++I G A  G  E++L+LF  +   G++ N VTF +++ 
Sbjct: 193 NIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 252

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               +  ++ G++ H   +R+E      L++   L+D+Y + G+L  +  V + M ++  
Sbjct: 253 ALSGLASLDYGKQVHALILRKELPFFVALQN--SLIDMYSKCGKLLYSRRVFDNM-LERS 309

Query: 258 AGAWGALL 265
             +W A+L
Sbjct: 310 VVSWNAML 317



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           + ++AC    AL +GR  H  +   R +  V LGT LV MY +CG ++ A +    M ER
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           +V +WT++I G +      ++L+LF  M +AG  PNE T  +VL  C     + +G++  
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ-V 165

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            S+  +   E  +     L+D+Y ++  + EA  V + +P
Sbjct: 166 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 205


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/448 (43%), Positives = 275/448 (61%), Gaps = 13/448 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   T ++ + AKC ++  ARK+FDEM  RD  +WNA+LAG AQ  +   AL LFH + 
Sbjct: 138 DVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEPSLALALFHRLV 197

Query: 82  IHDVKL------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
               +L      N V++++ LSAC  +G+L  G   H +  +  +   V +  AL+DMYS
Sbjct: 198 RSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGGNVRVCNALIDMYS 257

Query: 136 KCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           KCG++ +A++ F  +K  +R + ++ + I  ++M+G G  +L+LF  M    + P+EVT+
Sbjct: 258 KCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMPTC-IEPDEVTY 316

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           ++VL GC   GLV+EG   F  MR    + P ++HYG +VDL GRAGRL EA D I  MP
Sbjct: 317 IAVLCGCNHAGLVDEGLRVFHGMR----VPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMP 372

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313
                  W  LL A + + + E+ E+A+ KL EL +   G YVLLSN+YA    W  V  
Sbjct: 373 FPADIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLSNVYASKARWADVGR 432

Query: 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVAN 373
           VR  M++  V+K+PG S  E+   +H+F  GD+ HPR  EI   LGEI  R+   GY   
Sbjct: 433 VRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALGEIMSRIGELGYEPE 492

Query: 374 TNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISK 433
           T+ V++DI EEEK+  L  HSEK+AIAFGLI+   G  +R++KN+R+C DCH V K+ISK
Sbjct: 493 TSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNIRICGDCHVVAKLISK 552

Query: 434 VFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            + R II+RDR RFH F++G+CSC  YW
Sbjct: 553 AYGRAIIIRDRARFHRFEDGQCSCSDYW 580



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H  + R      V L T L+D Y+KC  +  A   F  M  R+V +W +++ GLA     
Sbjct: 127 HALVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEP 186

Query: 172 EKSLELFSLMKQAGVR------PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
             +L LF  + ++         PN VT ++ L  C  +G +++G        R+ G+   
Sbjct: 187 SLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDGL-CVHEFARKIGVGGN 245

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKM 252
           +     L+D+Y + G L  AL+V + +
Sbjct: 246 VRVCNALIDMYSKCGSLARALEVFHSI 272


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/462 (40%), Positives = 289/462 (62%), Gaps = 12/462 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+   L   + +F  ++E D+V  T+MI+A ++ G+V  AR+ FD M E++ I WNAM
Sbjct: 435 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAM 494

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L  Y Q G   + L ++ +M   + V+ + V+ V++   C  LGA   G        +  
Sbjct: 495 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 554

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L +  ++  A++ MYSKCG + +A   F  +  +++ +W ++I G + +G G++++E+F 
Sbjct: 555 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 614

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            + + G +P+ +++V+VL GC   GLV+EG+ +FD M+R + I P LEH+ C+VDL GRA
Sbjct: 615 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRA 674

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I+ MPMKP A  WGALL+AC+++ N E+ ELA++ + EL++ + G+Y+L++
Sbjct: 675 GHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 734

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IYA++   D    +R++M+ KG+KK PG S +EVD +VH F A D +HP+   I   L 
Sbjct: 735 KIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLD 794

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++   GYV  T+    +I           HSEK+A+AFGL++L   +PI I+KNLR
Sbjct: 795 ELMEKIARLGYV-RTDSTRSEIH----------HSEKLAVAFGLMTLPTWMPIHIMKNLR 843

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+IS V  RE ++RD  RFHHF  G CSC  YW
Sbjct: 844 ICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 135/267 (50%), Gaps = 2/267 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+   G +    ++F  I EP + C+ +M++   K   VD A ++FD MPERD ++WN M
Sbjct: 202 MFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM 261

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++  +Q G+ REAL +   MQ   V+L+  +  S L+AC  L +L  G+  H  + RN  
Sbjct: 262 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 321

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            +   + +ALV++Y+K G   +A   F  + +RN   WT +I G    G   +S+ELF+ 
Sbjct: 322 HIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 381

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+   +  ++    +++ GCC    +  GR+   S+  + G    +     L+ +Y +  
Sbjct: 382 MRAELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCD 440

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNA 267
            L  A  +   M  K    +W +++ A
Sbjct: 441 NLQSAEAIFRFMNEKDIV-SWTSMITA 466



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 37/315 (11%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I  P+V+    M++  AK G +  A ++F  MP RD  +WN +++GY Q  +   +L  F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 78  HLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
             M +  D   N  ++   + +C  LG           +++   +    +  ALVDM+ +
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 205

Query: 137 CG-------------------------------NMNKAMDFFWGMKERNVYTWTSVIGGL 165
           CG                                ++ A++ F  M ER+V +W  ++  L
Sbjct: 206 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 265

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
           + +G   ++L++   M+  GVR +  T+ S L  C  +  +  G++ H   +R    I+P
Sbjct: 266 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 325

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK-NTEMGELASRK 283
           ++     LV+LY ++G   EA  V N +  + +  AW  L++    Y   TE  EL ++ 
Sbjct: 326 YVA--SALVELYAKSGCFKEAKGVFNSLHDRNNV-AWTVLISGFLQYGCFTESVELFNQM 382

Query: 284 LVELETKNHGAYVLL 298
             EL T +  A   L
Sbjct: 383 RAELMTLDQFALATL 397


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 179/417 (42%), Positives = 260/417 (62%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
           +FDEMP RD + W ++L G A+ G    A+  +H M    V+ +E ++ + LS+C    A
Sbjct: 104 VFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTA 163

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           LD GR  H    R  L+   ++  +LV MY+K G +  A   F  M  R   TWT++I G
Sbjct: 164 LDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWTALIVG 223

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
            A NG G +SLE+++ M ++G RP+ VTF+ +L  C   GLV+ GR HF SM   YGI P
Sbjct: 224 YAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAP 283

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
             +HY C+VDL GRAGRLDEA+D++N+   +  A  W +LL ACR+++N E+ E A+  +
Sbjct: 284 GPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELAERAAEMV 343

Query: 285 VELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG 344
             L+  +   YV+LSN+Y+ ++ W  V  +R +MKA+GV K PGCS + V+   H F   
Sbjct: 344 WRLDPADAVPYVMLSNLYSRARRWGDVARIRALMKARGVTKEPGCSWVGVNGITHLFHVE 403

Query: 345 DETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLI 404
           D  HPR  EI   + E++ R+++ GYV +T+  + D   E ++  L  HSE++A+AFGL+
Sbjct: 404 DRDHPRAAEIYRKVEEMTERIRVEGYVPDTDWALQDEVPEWRQRGLAYHSERLAVAFGLL 463

Query: 405 SLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ++    PIR+ KNLRVC DCH   KM++KV+ REII+RD N FHH K+G+CSC  YW
Sbjct: 464 AVPAAAPIRVFKNLRVCGDCHTAIKMVAKVYGREIILRDANCFHHMKDGECSCGDYW 520


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 271/442 (61%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     +I    KC +V+LA  +F+ M  R+ ++W  M+A   Q  +  +A  +F +
Sbjct: 191 EGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLM 250

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            +   ++L +  + SV+SA   +  L+ GR  H    +  ++  + +G+ALVDMY KCG+
Sbjct: 251 GRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGS 310

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +      F  M ERN+ +W ++I G A  G  + ++ LF  M+   V  N VT + VL  
Sbjct: 311 IEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSA 369

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   G V+ G E F+SMR  Y IEP  EHY C+ D+ GRAG ++ A + + KMP++P   
Sbjct: 370 CSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTIS 429

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WGALLNACR+Y   E+G++A+  L +L+ K+ G +VLLSN++A +  WD    VR+ MK
Sbjct: 430 VWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMK 489

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             G+KK  GCS +    +VH F A D +H R +EI+ ML ++   ++ AGY+ +TN  +Y
Sbjct: 490 DVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALY 549

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EEEEK   +  HSEK+A+AFGLI+L  GVPIRI KNLR+C DCH   K IS +  REI
Sbjct: 550 DLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREI 609

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFH F++ +CSC+ +W
Sbjct: 610 IVRDNNRFHRFRDSQCSCRDFW 631



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 126/257 (49%), Gaps = 5/257 (1%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A+++FDEMP R+   WNA ++     G+  +A+  F   +    + + ++  + L+AC  
Sbjct: 112 AQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACAD 171

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
              LD GR  H  + R+  +  V++   ++D+Y KC  +  A   F GM  RN  +W ++
Sbjct: 172 ARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTM 231

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           +     N   EK+  +F + ++ G+   +    SV+     +  +E GR    ++  +  
Sbjct: 232 VAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRS-VHALAVKAC 290

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELAS 281
           +E  +     LVD+YG+ G +++   V ++MP + +  +W A+++    Y +    ++A 
Sbjct: 291 VEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPER-NLVSWNAMISG---YAHQGDVDMAM 346

Query: 282 RKLVELETKNHGAYVLL 298
               E++++    YV L
Sbjct: 347 TLFEEMQSEAVANYVTL 363



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 2/234 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A+ +    P R  + W A+++G  Q G    AL  F  M+  ++K N+ +      A T 
Sbjct: 11  AQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTA 70

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L     G+  H    +        +G +  DMYSK G   +A   F  M  RNV  W + 
Sbjct: 71  LCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAY 130

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I    ++G   K+++ F   ++ G  P+ +TF + L  C     ++ GR+    + R  G
Sbjct: 131 ISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRS-G 189

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            E  +     ++D+YG+   ++ A  V N M  + ++ +W  ++ AC      E
Sbjct: 190 FEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRR-NSVSWCTMVAACEQNDEKE 242



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 96/379 (25%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +  C++VF  + E ++V   AMIS  A  GDVD+A  +F+EM + + +A    
Sbjct: 304 MYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEM-QSEAVA---- 358

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNR 119
                                      N V+++ VLSAC+  GA+  G      + +R R
Sbjct: 359 ---------------------------NYVTLICVLSACSRGGAVKLGNEIFESMRDRYR 391

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           ++        + DM  + G + +A +F   M                             
Sbjct: 392 IEPGAEHYACIADMLGRAGMVERAYEFVQKMP---------------------------- 423

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGR 238
                 +RP    + ++L  C V G  E G+   D++   + ++P    ++  L +++  
Sbjct: 424 ------IRPTISVWGALLNACRVYGEPELGKIAADNL---FKLDPKDSGNHVLLSNMFAA 474

Query: 239 AGRLDEALDVINKMP---MKPHAG-AWGALLNACRMY--------KNTEMGELASRKLVE 286
           AGR DEA  V  +M    +K  AG +W    N   ++        +N+E+  +    LV+
Sbjct: 475 AGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAM----LVK 530

Query: 287 LETKNHGAYVLLSNIYA------ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHE 340
           L T+   A  +    YA      E K  +   +  +I  A G+  LP    I + + +  
Sbjct: 531 LRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLR- 589

Query: 341 FFAGDETHPRYNEIEVMLG 359
              GD  H  +  I  ++G
Sbjct: 590 -ICGD-CHSAFKFISGIVG 606



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
           MYSK    N A         R V TWT++I G   NG    +L  FS M++  ++PN+ T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 193 FVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVIN 250
           F    +    + L   G++ H  +++     + ++   GC   D+Y + G   EA  + +
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFV---GCSAFDMYSKTGLKFEAQRLFD 117

Query: 251 KMPMKPHAGAWGALLN 266
           +MP + +   W A ++
Sbjct: 118 EMPPR-NVAVWNAYIS 132


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/462 (40%), Positives = 289/462 (62%), Gaps = 12/462 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+   L   + +F  ++E D+V  T+MI+A ++ G+V  AR+ FD M E++ I WNAM
Sbjct: 415 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAM 474

Query: 61  LAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L  Y Q G   + L ++ +M   + V+ + V+ V++   C  LGA   G        +  
Sbjct: 475 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 534

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L +  ++  A++ MYSKCG + +A   F  +  +++ +W ++I G + +G G++++E+F 
Sbjct: 535 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 594

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            + + G +P+ +++V+VL GC   GLV+EG+ +FD M+R + I P LEH+ C+VDL GRA
Sbjct: 595 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRA 654

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA D+I+ MPMKP A  WGALL+AC+++ N E+ ELA++ + EL++ + G+Y+L++
Sbjct: 655 GHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 714

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            IYA++   D    +R++M+ KG+KK PG S +EVD +VH F A D +HP+   I   L 
Sbjct: 715 KIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLD 774

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++   GYV  T+    +I           HSEK+A+AFGL++L   +PI I+KNLR
Sbjct: 775 ELMEKIARLGYV-RTDSTRSEIH----------HSEKLAVAFGLMTLPTWMPIHIMKNLR 823

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+IS V  RE ++RD  RFHHF  G CSC  YW
Sbjct: 824 ICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 110/201 (54%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M+   G +    ++F  I EP + C+ +M++   K   VD A ++FD MPERD ++WN M
Sbjct: 182 MFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM 241

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++  +Q G+ REAL +   MQ   V+L+  +  S L+AC  L +L  G+  H  + RN  
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            +   + +ALV++Y+K G   +A   F  + +RN   WT +I G    G   +S+ELF+ 
Sbjct: 302 HIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 361

Query: 181 MKQAGVRPNEVTFVSVLRGCC 201
           M+   +  ++    +++ GCC
Sbjct: 362 MRAELMTLDQFALATLISGCC 382



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 37/315 (11%)

Query: 18  IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
           I  P+V+    M++  AK G +  A ++F  MP RD  +WN +++GY Q  +   +L  F
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 78  HLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
             M +  D   N  ++   + +C  LG           +++   +    +  ALVDM+ +
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 185

Query: 137 CG-------------------------------NMNKAMDFFWGMKERNVYTWTSVIGGL 165
           CG                                ++ A++ F  M ER+V +W  ++  L
Sbjct: 186 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
           + +G   ++L++   M+  GVR +  T+ S L  C  +  +  G++ H   +R    I+P
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 305

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK-NTEMGELASRK 283
           ++     LV+LY ++G   EA  V N +  + +  AW  L++    Y   TE  EL ++ 
Sbjct: 306 YVA--SALVELYAKSGCFKEAKGVFNSLHDRNNV-AWTVLISGFLQYGCFTESVELFNQM 362

Query: 284 LVELETKNHGAYVLL 298
             EL T +  A   L
Sbjct: 363 RAELMTLDQFALATL 377


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/443 (41%), Positives = 273/443 (61%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFH 78
           E D+    A+    +K GD++ A  +F    E R+ +++  ++ GY +  +  + L +F 
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 298

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            ++   ++ NE +  S++ AC +  AL+QG   H  + +        + + LVDMY KCG
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 358

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + +A+  F  + +     W S++     +G G+ ++++F  M   GV+PN +TF+S+L 
Sbjct: 359 LLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLT 418

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           GC   GLVEEG ++F SM + YG+ P  EHY C++DL GRAGRL EA + IN+MP +P+A
Sbjct: 419 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 478

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W + L ACR++ + EMG+LA+ KLV+LE KN GA VLLSNIYA  + W+ V +VR  M
Sbjct: 479 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 538

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           +   VKKLPG S ++V  + H F A D +HPR + I   L  +  ++K AGYV  T+ V 
Sbjct: 539 RDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVP 598

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+++  KE  L +HSE++A+AF LIS+  G PI + KNLRVC DCH   K ISKV  R+
Sbjct: 599 LDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRK 658

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD +RFHHF +G CSC  YW
Sbjct: 659 IIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 132/235 (56%), Gaps = 5/235 (2%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           +KCG +  A K+F+EMP +D ++W AM+ GY++ G+  EAL  F  M   +V +++  + 
Sbjct: 152 SKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLC 211

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE- 152
           S L AC  L A   GR  H  + +   +  + +G AL DMYSK G+M  A + F    E 
Sbjct: 212 STLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSEC 271

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           RNV ++T +I G       EK L +F  +++ G+ PNE TF S+++ C     +E+G + 
Sbjct: 272 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 331

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           H   M+  +  +P++     LVD+YG+ G L++A+   +++   P   AW +L++
Sbjct: 332 HAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVS 383



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           ++A L C GY    F   H         +++  +KCG++D A K+FD MP+R+ ++W AM
Sbjct: 27  LHALLICAGYTPCTFLTNH---------LVNMYSKCGELDHALKLFDTMPQRNLVSWTAM 77

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G +Q  K  EA+  F  M+I      + +  S + AC  LG+++ G+  H    +  +
Sbjct: 78  ISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGI 137

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
              + +G+ L DMYSKCG M  A   F  M  ++  +WT++I G +  G  E++L  F  
Sbjct: 138 GSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKK 197

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M    V  ++    S L  C  +   + GR    S+ +  G E  +     L D+Y +AG
Sbjct: 198 MIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFVGNALTDMYSKAG 256

Query: 241 RLDEALDVI 249
            ++ A +V 
Sbjct: 257 DMESASNVF 265



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 2/184 (1%)

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           L +G+  H  +          L   LV+MYSKCG ++ A+  F  M +RN+ +WT++I G
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
           L+ N    +++  F  M+  G  P +  F S +R C  +G +E G++    +  ++GI  
Sbjct: 81  LSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ-MHCLALKFGIGS 139

Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284
            L     L D+Y + G + +A  V  +MP K    +W A+++        E   LA +K+
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV-SWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 285 VELE 288
           ++ E
Sbjct: 199 IDEE 202


>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
 gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
          Length = 352

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 178/350 (50%), Positives = 242/350 (69%)

Query: 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG 171
           H ++E NR+++ + LGTAL+DMY+KCG++  A   F  M E++V TW+S+I GLA +G G
Sbjct: 3   HRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLG 62

Query: 172 EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231
            +SL LFS M   G++PN VTFV VL  C  VGLV EG+++F SM   +GIEP +EHYGC
Sbjct: 63  HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGC 122

Query: 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291
           +VDL GR+G ++EA  +I  M  +P    W ALL ACR++KN E+ E A  KL  L+   
Sbjct: 123 MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLG 182

Query: 292 HGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRY 351
            G YVLLSNIYA++ +W+ V  +R+ ++   ++++PG S IE D ++HEF +GD  HPR 
Sbjct: 183 DGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRS 242

Query: 352 NEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVP 411
            EI  +L E+  RLK AGY   T  V+ DI+E+ KE +L +HSEK+AIAF L++      
Sbjct: 243 KEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARST 302

Query: 412 IRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           IRI KNLR C DCH   K+IS V++R++IVRDRNRFHHF EG+CSCK YW
Sbjct: 303 IRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 352


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/434 (41%), Positives = 267/434 (61%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            ++S  AK G ++ ARK FD + E++ ++   +     +         L   ++     +
Sbjct: 406 GLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGV 465

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S+LS    +G + +G   H  + +   +  +++  AL+ MYSKCGN   A+  F
Sbjct: 466 SSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVF 525

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M++ NV TWTS+I G A +G   K+LELF  M + GV+PN+VT+++VL  C  VGL++
Sbjct: 526 NDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLID 585

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           E  +HF SMR  +GI P +EHY C+VDL GR+G L EA++ IN MP    A  W   L +
Sbjct: 586 EAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGS 645

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR+++NT++GE A++ ++E E  +   Y+LLSN+YA    W+ V  +R+ MK K + K  
Sbjct: 646 CRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEA 705

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           G S IEV+ +VH+F  GD  HP+  +I   L E++ ++K  GYV NT+ V++D+E+E+KE
Sbjct: 706 GSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKE 765

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L +HSEK+A+AF LIS     PIR+ KNLRVC DCH   K IS V  REI+VRD NRF
Sbjct: 766 QYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRF 825

Query: 448 HHFKEGKCSCKGYW 461
           HH K+G CSC  YW
Sbjct: 826 HHMKDGTCSCNDYW 839



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 17/219 (7%)

Query: 37  GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSV 95
            D++ ARK+FD+M E++ + W  M+   AQ G + EA+ LF  M +    + +  ++  +
Sbjct: 209 ADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGL 268

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           +S C  +  L  G+  H ++ R+ L + + +G +LVDMY+KCG + +A   F GM+E NV
Sbjct: 269 ISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNV 328

Query: 156 YTWTSVIGGLAMNGAG--EKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
            +WT+++ G    G G   +++ +FS ++ Q GV PN  TF  VL+ C  +         
Sbjct: 329 MSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASL-------PD 381

Query: 213 FDSMRREYG--IEPWLEHYGC----LVDLYGRAGRLDEA 245
           FD   + +G  I+  L    C    LV +Y ++GR++ A
Sbjct: 382 FDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESA 420



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 5/249 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS--REALHLFHL 79
           D+    +++   AKCG V  ARK+FD M E + ++W A++ GY + G    REA+ +F  
Sbjct: 296 DLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSN 355

Query: 80  MQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           M +   V  N  +   VL AC  L   D G   H    +  L     +G  LV +Y+K G
Sbjct: 356 MLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSG 415

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M  A   F  + E+N+ + T V      +       +L   ++  G   +  T+ S+L 
Sbjct: 416 RMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLS 475

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           G   +G + +G E   +M  + G    L     L+ +Y + G  + AL V N M    + 
Sbjct: 476 GAACIGTIGKG-EQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDME-DCNV 533

Query: 259 GAWGALLNA 267
             W +++N 
Sbjct: 534 ITWTSIING 542



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 85/146 (58%), Gaps = 4/146 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A+IS  +KCG+ + A ++F++M + + I W +++ G+A+ G + +AL LF+ M 
Sbjct: 501 DLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNML 560

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSKCGN 139
              VK N+V+ ++VLSAC+H+G +D+  W H    R+   +   +     +VD+  + G 
Sbjct: 561 ETGVKPNDVTYIAVLSACSHVGLIDEA-WKHFTSMRDNHGIVPRMEHYACMVDLLGRSGL 619

Query: 140 MNKAMDFFWGMK-ERNVYTWTSVIGG 164
           +++A++F   M  + +   W + +G 
Sbjct: 620 LSEAIEFINSMPFDADALVWRTFLGS 645



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
           Q  K+   L+L      H+ KL   S++  L  C        G+  H  +  + L +   
Sbjct: 31  QLHKAITTLNLTDTESTHNNKLITSSLL--LKQCIRTKNTHLGKLLHHKLTTSNLPLDTL 88

Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELF-SLMK 182
           L  +L+ +YSK  +   A   F  M+  +R+V +++S+I   A N    K++E+F  L+ 
Sbjct: 89  LLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLL 148

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           Q GV PNE  F +V+R C   G  + G
Sbjct: 149 QDGVYPNEYCFTAVIRACLKGGFFKTG 175


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/443 (41%), Positives = 273/443 (61%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFH 78
           E D+    A+    +K GD++ A  +F    E R+ +++  ++ GY +  +  + L +F 
Sbjct: 174 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 233

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            ++   ++ NE +  S++ AC +  AL+QG   H  + +        + + LVDMY KCG
Sbjct: 234 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 293

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            + +A+  F  + +     W S++     +G G+ ++++F  M   GV+PN +TF+S+L 
Sbjct: 294 LLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLT 353

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
           GC   GLVEEG ++F SM + YG+ P  EHY C++DL GRAGRL EA + IN+MP +P+A
Sbjct: 354 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 413

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W + L ACR++ + EMG+LA+ KLV+LE KN GA VLLSNIYA  + W+ V +VR  M
Sbjct: 414 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 473

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           +   VKKLPG S ++V  + H F A D +HPR + I   L  +  ++K AGYV  T+ V 
Sbjct: 474 RDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVP 533

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D+++  KE  L +HSE++A+AF LIS+  G PI + KNLRVC DCH   K ISKV  R+
Sbjct: 534 LDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRK 593

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD +RFHHF +G CSC  YW
Sbjct: 594 IIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 132/235 (56%), Gaps = 5/235 (2%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           +KCG +  A K+F+EMP +D ++W AM+ GY++ G+  EAL  F  M   +V +++  + 
Sbjct: 87  SKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLC 146

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE- 152
           S L AC  L A   GR  H  + +   +  + +G AL DMYSK G+M  A + F    E 
Sbjct: 147 STLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSEC 206

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE- 211
           RNV ++T +I G       EK L +F  +++ G+ PNE TF S+++ C     +E+G + 
Sbjct: 207 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 266

Query: 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           H   M+  +  +P++     LVD+YG+ G L++A+   +++   P   AW +L++
Sbjct: 267 HAQVMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVS 318



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 1/201 (0%)

Query: 49  MPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108
           MP+R+ ++W AM++G +Q  K  EA+  F  M+I      + +  S + AC  LG+++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
           +  H    +  +   + +G+ L DMYSKCG M  A   F  M  ++  +WT++I G +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
           G  E++L  F  M    V  ++    S L  C  +   + GR    S+ +  G E  +  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFV 179

Query: 229 YGCLVDLYGRAGRLDEALDVI 249
              L D+Y +AG ++ A +V 
Sbjct: 180 GNALTDMYSKAGDMESASNVF 200



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
           M +RN+ +WT++I GL+ N    +++  F  M+  G  P +  F S +R C  +G +E G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACR 269
           ++    +  ++GI   L     L D+Y + G + +A  V  +MP K    +W A+++   
Sbjct: 61  KQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV-SWTAMIDGYS 118

Query: 270 MYKNTEMGELASRKLVELET 289
                E   LA +K+++ E 
Sbjct: 119 KIGEFEEALLAFKKMIDEEV 138


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/456 (42%), Positives = 277/456 (60%), Gaps = 7/456 (1%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           Q +  G H+   V  + +I   +KCG  +   RK+F+E+ E D + WN M++GY+Q  + 
Sbjct: 265 QLIKTGFHQNSHV-GSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEF 323

Query: 71  RE-ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGT 128
            E AL  F  MQ    + N+ S V V+SAC++L +  QG+  H    ++ +    +++  
Sbjct: 324 LEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDN 383

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL+ MYSKCGN+  A   F  M E N  +  S+I G A +G   +SL LF  M +  + P
Sbjct: 384 ALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAP 443

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
             +TF+SVL  C   G VEEG  +F+ M+ ++ IEP  EHY C++DL GRAG+L EA ++
Sbjct: 444 TSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENL 503

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I +MP  P +  W +LL ACR + N E+   A+ ++++LE  N   YV+LSN+YA +  W
Sbjct: 504 IARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRW 563

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
           + V  VR+ M+ +GVKK PGCS IEV + +H F A D +HP   EI   L E+S ++K A
Sbjct: 564 EEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRA 623

Query: 369 GYVANTNPVMYDIEEE---EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
           GYV +    +   +     EKE  L  HSEK+A+AFGLIS K+G P+ +VKNLR+C DCH
Sbjct: 624 GYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCH 683

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +  K IS +  REI VRD +RFH FKEG+CSC  YW
Sbjct: 684 NAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 8/243 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G L + +K F  I +P+V    A+I+A AK     +A ++FD++PE D +++N +
Sbjct: 52  LYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTL 111

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNR 119
           ++ YA CG++  AL LF  M+   + ++  ++ +V++A C  +G + Q    H     + 
Sbjct: 112 ISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQ---LHSVAVSSG 168

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLELF 178
               V++  AL+  Y K G+++ A   F+GM   R+  +W S+I     +  G K+L LF
Sbjct: 169 FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLF 228

Query: 179 SLMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
             M + G+  +  T  SVL    C+  L   G   F     + G          L+DLY 
Sbjct: 229 QEMVRRGLNVDMFTLASVLTAFTCLEDL--SGGLQFHGQLIKTGFHQNSHVGSGLIDLYS 286

Query: 238 RAG 240
           + G
Sbjct: 287 KCG 289



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 36/205 (17%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C     L  G+  H    ++ +  +       + +YSKCG +  A   F  + + N
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 155 VYTWTSVIGGLAMN-------------------------------GAGEKSLELFSLMKQ 183
           V+++ ++I   A                                 G    +L LFS M++
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 184 AGVRPNEVTFVSVLRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            G+  +  T  +V+  CC  VGL+  G+ H  S+    G + ++     L+  YG+ G L
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLI--GQLH--SVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 243 DEALDVINKMPMKPHAGAWGALLNA 267
           D+A  V   M       +W +++ A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVA 214


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 192/459 (41%), Positives = 275/459 (59%), Gaps = 16/459 (3%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
            GCLG              +  T ++    K G++  A  +F+ M  +D +AWNA LA  
Sbjct: 140 FGCLG--------------IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVC 185

Query: 65  AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
            Q G S  AL  F+ M    V+ +  ++VS+LSAC  LG+L+ G   +    +  +   +
Sbjct: 186 VQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNI 245

Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            +  A +DM+ KCGN   A   F  MK+RNV +W+++I G AMNG   ++L LF+ M+  
Sbjct: 246 IVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNE 305

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM--RREYGIEPWLEHYGCLVDLYGRAGRL 242
           G+RPN VTF+ VL  C   GLV EG+ +F  M    +  +EP  EHY C+VDL GR+G L
Sbjct: 306 GLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLL 365

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302
           +EA + I KMP++P  G WGALL AC ++++  +G+  +  LVE        +VLLSNIY
Sbjct: 366 EEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIY 425

Query: 303 AESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEIS 362
           A +  WD V  VR  M+  G KK+   S +E + ++H F  GD++HP+   I   L EI 
Sbjct: 426 AAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEIL 485

Query: 363 RRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCW 422
           ++++  GYV +T  V +D+E EEKE +L  HSEK+AIAFGLI  + G PIR++KNLR C 
Sbjct: 486 KKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCD 545

Query: 423 DCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           DCH  +K +S + + EII+RD+NRFHHF+ G CSCK +W
Sbjct: 546 DCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 98/174 (56%), Gaps = 8/174 (4%)

Query: 3   AELGCLGYCQKVFDGIHEPDVVC----QTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
            +LG L   ++++D   + ++ C    + A +    KCG+ + AR +F+EM +R+ ++W+
Sbjct: 221 GQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWS 280

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIER 117
            M+ GYA  G SREAL LF  MQ   ++ N V+ + VLSAC+H G +++G R+  + ++ 
Sbjct: 281 TMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQS 340

Query: 118 N--RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
           N   L+        +VD+  + G + +A +F   M  E +   W +++G  A++
Sbjct: 341 NDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVH 394



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 91/193 (47%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T ++      GD+  AR++FDEM +     WN +  GY +     E+L L+  M+   V+
Sbjct: 47  TQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVR 106

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            +E +   V+ A + LG    G   H ++ +        + T LV MY K G ++ A   
Sbjct: 107 PDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFL 166

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M+ +++  W + +      G    +LE F+ M    V+ +  T VS+L  C  +G +
Sbjct: 167 FESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSL 226

Query: 207 EEGREHFDSMRRE 219
           E G E +D  R+E
Sbjct: 227 EIGEEIYDRARKE 239



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 16/178 (8%)

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           Q +  H  + R       +L T L++     G+M  A   F  M +  ++ W ++  G  
Sbjct: 26  QLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYV 85

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            N    +SL L+  M+  GVRP+E T+  V++    +G    G     +   +YG     
Sbjct: 86  RNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFA-LHAHVVKYG----- 139

Query: 227 EHYGC-------LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
             +GC       LV +Y + G L  A  +   M +K    AW A L  C    N+ + 
Sbjct: 140 --FGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLV-AWNAFLAVCVQTGNSAIA 194


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/456 (42%), Positives = 277/456 (60%), Gaps = 7/456 (1%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGD-VDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
           Q +  G H+   V  + +I   +KCG  +   RK+F+E+ E D + WN M++GY+Q  + 
Sbjct: 265 QLIKTGFHQNSHV-GSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEF 323

Query: 71  RE-ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGT 128
            E AL  F  MQ    + N+ S V V+SAC++L +  QG+  H    ++ +    +++  
Sbjct: 324 LEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDN 383

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           AL+ MYSKCGN+  A   F  M E N  +  S+I G A +G   +SL LF  M +  + P
Sbjct: 384 ALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAP 443

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
             +TF+SVL  C   G VEEG  +F+ M+ ++ IEP  EHY C++DL GRAG+L EA ++
Sbjct: 444 TSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENL 503

Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
           I +MP  P +  W +LL ACR + N E+   A+ ++++LE  N   YV+LSN+YA +  W
Sbjct: 504 IARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRW 563

Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
           + V  VR+ M+ +GVKK PGCS IEV + +H F A D +HP   EI   L E+S ++K A
Sbjct: 564 EEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRA 623

Query: 369 GYVANTNPVMYDIEEE---EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
           GYV +    +   +     EKE  L  HSEK+A+AFGLIS K+G P+ +VKNLR+C DCH
Sbjct: 624 GYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCH 683

Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +  K IS +  REI VRD +RFH FKEG+CSC  YW
Sbjct: 684 NAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 8/243 (3%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y++ G L + +K F  I +P+V    A+I+A AK     +A ++FD++PE D +++N +
Sbjct: 52  LYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTL 111

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNR 119
           ++ YA CG++  AL LF  M+   + ++  ++ +V++A C  +G + Q    H     + 
Sbjct: 112 ISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQ---LHSVAVSSG 168

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLELF 178
               V++  AL+  Y K G+++ A   F+GM   R+  +W S+I     +  G K+L LF
Sbjct: 169 FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLF 228

Query: 179 SLMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
             M + G+  +  T  SVL    C+  L   G   F     + G          L+DLY 
Sbjct: 229 QEMVRRGLNVDMFTLASVLTAFTCLEDL--SGGLQFHGQLIKTGFHQNSHVGSGLIDLYS 286

Query: 238 RAG 240
           + G
Sbjct: 287 KCG 289



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 36/205 (17%)

Query: 95  VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
           +L  C     L  G+  H    ++ +  +       + +YSKCG +  A   F  + + N
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 155 VYTWTSVIGGLAMN-------------------------------GAGEKSLELFSLMKQ 183
           V+++ ++I   A                                 G    +L LFS M++
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 184 AGVRPNEVTFVSVLRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
            G+  +  T  +V+  CC  VGL+  G+ H  S+    G + ++     L+  YG+ G L
Sbjct: 134 MGLDMDXFTLSAVITACCDDVGLI--GQLH--SVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 243 DEALDVINKMPMKPHAGAWGALLNA 267
           D+A  V   M       +W +++ A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVA 214


>gi|326525961|dbj|BAJ93157.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 615

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 188/449 (41%), Positives = 286/449 (63%), Gaps = 4/449 (0%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREAL 74
           G  E D   Q ++IS   KCG+ +LAR+ F++M   ER   +W+A+LA Y + G+  + L
Sbjct: 167 GFLEHDEHAQNSLISFYGKCGEPELARRAFEQMEAGERTAASWSALLAAYTKAGRWADCL 226

Query: 75  HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134
             F  M     + +E SMVS LSAC HLGA D GR  H  + RN + +   + T+LVDMY
Sbjct: 227 ESFGAMVRDGWRPDESSMVSALSACAHLGAYDVGRSVHGALLRNTVTLNTFMETSLVDMY 286

Query: 135 SKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           +KCG + KA   F GM  ++N +T+++++ GLA++G G K+L++F  M   G +P+E  +
Sbjct: 287 AKCGCIEKATAVFDGMDGKKNEWTYSAMVSGLALHGDGRKALKVFDAMISEGHKPDEAVY 346

Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
           V VL  C   GL+EEG   FD MR E  + P  +HYGC+VDL  RAGR+DEA ++I  MP
Sbjct: 347 VGVLNACSRSGLLEEGLRCFDRMRLERKVAPNAQHYGCMVDLMARAGRMDEARELIGSMP 406

Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLLSNIYAESKNWDRVI 312
             P   AW +LLNACR++ + E+ + A ++L  L    N G Y++L++++A++KNW+  +
Sbjct: 407 TGPTDTAWRSLLNACRIHGDIELADRALQELARLGGAVNAGDYIILADMHAKAKNWEEAV 466

Query: 313 NVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA 372
            +R     +G+ + PG S +EV  ++H F + D +HPR  +I  ML ++  +L+  GY  
Sbjct: 467 ALRTEAVHRGLAQAPGFSAVEVHGKMHRFTSQDRSHPRTADIYEMLHQMEWQLRFEGYKP 526

Query: 373 NTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMIS 432
           +T+ V  + ++EEK   +  HS+K+A+AFGL+S  EG P+R+V NLR+  +CH  + +IS
Sbjct: 527 DTSEVALEADDEEKRRAVAAHSQKLAMAFGLLSTPEGTPVRVVTNLRMSKECHAYSALIS 586

Query: 433 KVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           ++F RE++VRDRNRFH F+ G CSC  YW
Sbjct: 587 EIFGREVVVRDRNRFHRFRRGGCSCGNYW 615



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 10/253 (3%)

Query: 29  MISACAK---CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHD 84
           +++ACA     G ++ A  +F  + E +   +N ++ G+   G+    AL L+  M  +D
Sbjct: 73  LLAACALGEWPGSMEYAAAIFATLDEPEAFDYNTLMRGHVVGGRDPAAALRLYVDMLHND 132

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           V  +  +   VL AC  L A  QGR    + ++   L+       +L+  Y KCG    A
Sbjct: 133 VVPDGYTFPFVLKACAQLLAFRQGRQLQGHAMKLGFLEHDEHAQNSLISFYGKCGEPELA 192

Query: 144 MDFFWGMK--ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
              F  M+  ER   +W++++      G     LE F  M + G RP+E + VS L  C 
Sbjct: 193 RRAFEQMEAGERTAASWSALLAAYTKAGRWADCLESFGAMVRDGWRPDESSMVSALSACA 252

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +G  + GR  H   +R    +  ++E    LVD+Y + G +++A  V + M  K +   
Sbjct: 253 HLGAYDVGRSVHGALLRNTVTLNTFME--TSLVDMYAKCGCIEKATAVFDGMDGKKNEWT 310

Query: 261 WGALLNACRMYKN 273
           + A+++   ++ +
Sbjct: 311 YSAMVSGLALHGD 323


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 185/443 (41%), Positives = 277/443 (62%), Gaps = 1/443 (0%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ DV   ++++   AKCG++  ARKMFDEMP+R+ + W+ M+ GYAQ G++ EAL LF 
Sbjct: 147 YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFK 206

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
                ++ +N+ S  SV+S C +   L+ GR  H    ++    +  +G++LV +YSKCG
Sbjct: 207 EALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCG 266

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
               A   F  +  +N+  W +++   A +   +K +ELF  MK +G++PN +TF++VL 
Sbjct: 267 VPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLN 326

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLV+EGR +FD M+ E  IEP  +HY  LVD+ GRAGRL EAL+VI  MP+ P  
Sbjct: 327 ACSHAGLVDEGRYYFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTE 385

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             WGALL +C ++KNTE+   A+ K+ EL   + G ++ LSN YA    ++     R+++
Sbjct: 386 SVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLL 445

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + +G KK  G S +E   +VH F AG+  H +  EI   L E+   ++ AGY+A+T+ V+
Sbjct: 446 RDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVL 505

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            +++ +EK  T+  HSE++AIAFGLI+     PIR++KNLRVC DCH+  K +S    R 
Sbjct: 506 REVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRV 565

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD NRFH F++GKCSC  YW
Sbjct: 566 IIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 2/234 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           +R+ F++ P++    W+++++ +AQ      +L     M   +++ ++  + S   +C  
Sbjct: 69  SRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAI 128

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L   D GR  H    +      V +G++LVDMY+KCG +  A   F  M +RNV TW+ +
Sbjct: 129 LSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGM 188

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           + G A  G  E++L LF       +  N+ +F SV+  C    L+E GR+    +  +  
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQ-IHGLSIKSS 247

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
            +        LV LY + G  + A  V N++P+K + G W A+L A   + +T+
Sbjct: 248 FDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVK-NLGIWNAMLKAYAQHSHTQ 300



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           +G   H Y+ ++ L +   +   L++ YSK      +   F    +++  TW+S+I   A
Sbjct: 33  KGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFA 92

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPW 225
            N     SLE    M    +RP++    S  + C ++   + GR  H  SM+  Y  + +
Sbjct: 93  QNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVF 152

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
           +     LVD+Y + G +  A  + ++MP + +   W  +     MY   +MGE
Sbjct: 153 VG--SSLVDMYAKCGEIVYARKMFDEMPQR-NVVTWSGM-----MYGYAQMGE 197


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 270/434 (62%), Gaps = 10/434 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++S  A+ G ++ AR++F+++ ER  I           C        L H +   DV +
Sbjct: 399 ALVSMYAESGCMEEARRVFNQLYERSMIP----------CITEGRDFPLDHRIVRMDVGI 448

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +  S++SA   +G L +G+  H    +        +  +LV MYS+CG +  A   F
Sbjct: 449 SSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSF 508

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             +K+RNV +WTS+I GLA +G  E++L LF  M   GV+PN+VT+++VL  C  VGLV 
Sbjct: 509 NELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVR 568

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           EG+E+F SM+R++G+ P +EHY C+VDL  R+G + EAL+ IN+MP+K  A  W  LL A
Sbjct: 569 EGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGA 628

Query: 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
           CR + N E+GE+ ++ +VELE ++   YVLLSN+YA++  WD V  +R  M+   + K  
Sbjct: 629 CRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKET 688

Query: 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
           G S +EV+   HEF AGD +HPR  +I   L  + R++K  GYV +T+ V++D+ +E KE
Sbjct: 689 GLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKE 748

Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
             L +HSEK+A+AFGLI+     PIRI KNLRVC DCH   K +SK   REII+RD NRF
Sbjct: 749 QYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRF 808

Query: 448 HHFKEGKCSCKGYW 461
           H  K+G+CSC  YW
Sbjct: 809 HRMKDGECSCGEYW 822



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 9/242 (3%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+   DV   +A+I   A+ GD+  ARK+FD + E+  + W  +++ Y Q   + EA+ L
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEL 241

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F        + +  +M S++SACT LG++  G   H    R  L     +   LVDMY+K
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAK 301

Query: 137 CGNMNKAMDF----FWGMKERNVYTWTSVIGGLAMNGAGE-KSLELFSLMKQAGVRPNEV 191
             N+ +AMD+    F  M + +V +WT++I G   +G  E K + LF  M    ++PN +
Sbjct: 302 -SNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHI 360

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T+ S+L+ C  +   + GR+ H   ++        + +   LV +Y  +G ++EA  V N
Sbjct: 361 TYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGN--ALVSMYAESGCMEEARRVFN 418

Query: 251 KM 252
           ++
Sbjct: 419 QL 420



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 26/235 (11%)

Query: 32  ACAKCGDVDL------------ARKMFDEMPERDPIAWNAMLAGYAQCG-KSREALHLFH 78
           AC  CG VD+            A K+F+ MP+ D I+W A+++GY Q G +  + + LF 
Sbjct: 289 ACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFG 348

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    +K N ++  S+L +C  +   D GR  H ++ ++      T+G ALV MY++ G
Sbjct: 349 EMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESG 408

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M +A   F  + ER++    +            +   L   + +  V  +  TF S++ 
Sbjct: 409 CMEEARRVFNQLYERSMIPCIT----------EGRDFPLDHRIVRMDVGISSSTFASLIS 458

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
               VG++ +G++ H  S++  +G + ++ +   LV +Y R G L++A    N++
Sbjct: 459 AAASVGMLTKGQQLHAMSLKAGFGSDRFVSN--SLVSMYSRCGYLEDACRSFNEL 511



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 87/145 (60%), Gaps = 2/145 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D     +++S  ++CG ++ A + F+E+ +R+ I+W +M++G A+ G +  AL LFH M 
Sbjct: 484 DRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMI 543

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCGNM 140
           +  VK N+V+ ++VLSAC+H+G + +G+     ++R+  L   +     +VD+ ++ G +
Sbjct: 544 LTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIV 603

Query: 141 NKAMDFFWGMK-ERNVYTWTSVIGG 164
            +A++F   M  + +   W +++G 
Sbjct: 604 KEALEFINEMPLKADALVWKTLLGA 628



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 8/251 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D V   ++++  ++CG V  AR +FD M   RD ++W AM +  A+ G  R +L L   M
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEM 142

Query: 81  QIHDVKLNEVSMVSVLSACT--HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
               +  N  ++ +   AC    L  L  G    +  +       V +G+AL+DM ++ G
Sbjct: 143 LESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNG 202

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F G+ E+ V  WT +I         E+++ELF    + G  P+  T  S++ 
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMIS 262

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG---RLDEALDVINKMPMK 255
            C  +G V  G +   S+    G+         LVD+Y ++     +D A  V  +MP K
Sbjct: 263 ACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMP-K 320

Query: 256 PHAGAWGALLN 266
               +W AL++
Sbjct: 321 NDVISWTALIS 331



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 103 GALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTS 160
           G L  GR  H  + R + L     +  +L+ +YS+CG +  A + F GM+  R++ +WT+
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           +   LA NGA   SL L   M ++G+ PN  T  +    C
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC 161


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 181/443 (40%), Positives = 275/443 (62%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +E ++V  +++     K G +    K+   M  R+ +AWN ++AG AQ G     L L++
Sbjct: 120 YEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYN 179

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
           +M++  ++ +++++VSV+S+   L  L QG+  H    +      V + ++L+ MYSKCG
Sbjct: 180 MMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCG 239

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            +  +M      +  +   W+S+I     +G GE+++ LF  M+Q G+  N+VTF+S+L 
Sbjct: 240 CLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLY 299

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GL E+G   F  M  +YG++P LEHY C+VDL GR+G LDEA  +I  MP++   
Sbjct: 300 ACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADV 359

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL+ACR+++N +M    + +++ L  ++   YVLLSNI+A +K W  V  VR  M
Sbjct: 360 VIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTM 419

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           + + VKK PG S +EV   V +F  GD++HP   EI++ L E+   +KL GYV +T  V 
Sbjct: 420 RDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVF 479

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D + EEKE++L  HSEK+AIAFGL+++  G PIR++KNLR+C DCH   K+IS + NRE
Sbjct: 480 HDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNRE 539

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD +RFHHFK GKCSC  YW
Sbjct: 540 IIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 156/310 (50%), Gaps = 9/310 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY ++G +      F+ +   +++    +I+   + GD+D A K+FDEM ER+   WNAM
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++G  Q   +   L LF  M       +E ++ SVL  C  L A   G+  H Y+ +   
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  + +G++L  MY K G++ +       M+ RNV  W ++I G A NG  E  L+L+++
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNM 180

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRA 239
           MK +G+RP+++T VSV+     +  + +G++ H ++++   G    +     L+ +Y + 
Sbjct: 181 MKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKA--GANSAVAVLSSLISMYSKC 238

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA--YVL 297
           G L++++  +      P +  W +++ A   Y     GE A     ++E +  G      
Sbjct: 239 GCLEDSMKALLDCE-HPDSVLWSSMIAA---YGFHGRGEEAVHLFEQMEQEGLGGNDVTF 294

Query: 298 LSNIYAESKN 307
           LS +YA S N
Sbjct: 295 LSLLYACSHN 304


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 190/450 (42%), Positives = 275/450 (61%), Gaps = 5/450 (1%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+     V    +++   KCG VD AR++ D MP R  ++W AM+A YAQ G + EA++L
Sbjct: 264 GLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINL 323

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYS 135
           F  M +   + ++++++SV+ +C  LG L  G+  H  I  +     ++ L  A++ MY 
Sbjct: 324 FQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYG 383

Query: 136 KCGNMNKAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVT 192
           KCGN+  A + F    ++ R+V TWT++I   A NG GE+++ELF  ++   G  PN VT
Sbjct: 384 KCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVT 443

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK- 251
           F+SVL  C  +G +E+  EHF SM  ++G+ P  +HY CLVDL GRAGRL EA  ++ + 
Sbjct: 444 FLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRH 503

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
              +     W A L+AC+M  + E  + A++++ ELE +N    VLLSN+YA       V
Sbjct: 504 KDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADV 563

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             +R  MK+ GVKK  G S IE++  VHEF   D +HPR  EI   L  + R +K AGYV
Sbjct: 564 ARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYV 623

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +T  V+ D++EE+K   L  HSE++A+A G+IS   G  +R+VKNLRVC DCH  TK I
Sbjct: 624 PDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFI 683

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           S++  R+IIVRD +RFHHFK+G CSC  YW
Sbjct: 684 SQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 134/267 (50%), Gaps = 13/267 (4%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D   ++++I+   +C +++ A + FD  PE+D + W AM++ YA   ++  AL L   
Sbjct: 165 EIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRR 224

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQG-----RWAHVYIERNRLKMTVTLGTALVDMY 134
           M +  +KL   + VS+L AC     L  G     R A + ++R+    TV  GT LV++Y
Sbjct: 225 MDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSS---TVVAGT-LVNLY 280

Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
            KCG ++ A      M  R   +WT++I   A NG   +++ LF  M   G  P+++T +
Sbjct: 281 GKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLI 340

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           SV+  C V+G +  G+     +R        L     ++ +YG+ G L+ A +V   +P+
Sbjct: 341 SVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPL 400

Query: 255 KPHA-GAWGALLNACRMYKNTEMGELA 280
           +  +   W A++   R Y    +GE A
Sbjct: 401 RTRSVVTWTAMI---RAYAQNGVGEEA 424



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 11/244 (4%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++ A +K G +  A+  F  +   +  +WN ++A YAQ G  R A  LFH M    V+ N
Sbjct: 73  LVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPN 132

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
            V++ + L ACT    L  GR  +  I    L++   + ++L+ MY +C  + +A   F 
Sbjct: 133 AVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFD 192

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV----- 203
              E++V  WT++I   A N    ++LEL   M   G++    T+VS+L  C        
Sbjct: 193 RSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRN 252

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G+    R     + R   +       G LV+LYG+ GR+D+A  V++ MP++    +W A
Sbjct: 253 GVAFHQRAAAIGLDRSSTVVA-----GTLVNLYGKCGRVDDARRVLDAMPVRTSV-SWTA 306

Query: 264 LLNA 267
           ++ A
Sbjct: 307 MIAA 310



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           LD+ R  H  I   +L     LG  LVD YSK G+++ A   F  +   N ++W  ++  
Sbjct: 48  LDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAA 107

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE-YGIE 223
            A NG    +  LF  M   GVRPN VT  + L  C     +  GR+  + +  E   I+
Sbjct: 108 YAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEID 167

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA-CRMYKNTEMGELASR 282
             +E    L+ +YGR   ++EA    ++ P K     W A+++A    ++ +   EL  R
Sbjct: 168 SHVE--SSLITMYGRCREIEEAERAFDRSPEKD-VVCWTAMISAYAHNWRTSRALELVRR 224

Query: 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
             +E        YV L +  A + +    +   Q   A G+ +
Sbjct: 225 MDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDR 267


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 183/462 (39%), Positives = 288/462 (62%), Gaps = 12/462 (2%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G L   + +F+ + E D+V  T MI+A ++ G++  AR+ FD+M  R+ I WNAM
Sbjct: 436 MYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAM 495

Query: 61  LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           L  Y Q G   + L ++  ++   DV  + V+ V++   C  +GA   G     +  +  
Sbjct: 496 LGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVG 555

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           L +  ++  A++ MYSKCG +++A   F  +  +++ +W ++I G + +G G++++E+F 
Sbjct: 556 LILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD 615

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            +   G +P+ +++V+VL GC   GLVEEG+ +FD M+R++ I P LEH+ C+VDL GRA
Sbjct: 616 DILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRA 675

Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
           G L EA ++I++MPMKP A  WGALL+AC+ + N ++ ELA++ L +L++   G Y+LL+
Sbjct: 676 GHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLA 735

Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
            +YA++   D    VR++M+ KG+KK PG S +EV+  VH F A D +HP+   I   L 
Sbjct: 736 KMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLD 795

Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
           E+  ++   GYV   +P            +   HSEK+A+AFG++SL   +PI I+KNLR
Sbjct: 796 ELMEKIAHLGYVRTESP-----------RSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLR 844

Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           +C DCH V K+IS V +RE ++RD  RFHHFK G CSC  YW
Sbjct: 845 ICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 138/273 (50%), Gaps = 2/273 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           M    G + +  K F  I  P ++C+ +M+   AK   VD A ++F  MPERD ++WN +
Sbjct: 203 MLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMV 262

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++  ++ G+ REAL +   M    V+ +  +  S L+AC  L +L+ G+  HV + RN  
Sbjct: 263 ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP 322

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            +   + +A+V++Y+KCG   +A   F  +++RN  +WT +IGG    G   +S+ELF+ 
Sbjct: 323 HIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQ 382

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+   +  ++    +++ GCC    +  G +   S+  + G    +     L+ +Y + G
Sbjct: 383 MRAELMAVDQFALATLISGCCNTMDICLGSQ-LHSLCLKSGHTRAVVVSNSLISMYAKCG 441

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
            L  A  + N M  +    +W  ++ A     N
Sbjct: 442 NLQNAELIFNFMAERDIV-SWTGMITAYSQVGN 473



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 38/332 (11%)

Query: 2   YAELGCLGYCQKVF-DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           Y   G L   + +  D I EP+V+    M++  AK G +  A ++F  MP RD  +WN +
Sbjct: 70  YLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTI 129

Query: 61  LAGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
           ++GY Q G+   AL +F  M Q  D   N  +   V+ +C  LG  +        + +  
Sbjct: 130 MSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFD 189

Query: 120 LKMTVTLGTALVDMYSKCGNM-------------------------------NKAMDFFW 148
            +    + TALVDM  +CG M                               + A++ F 
Sbjct: 190 SQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFK 249

Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
            M ER+V +W  VI  L+ +G   ++L++   M   GVRP+  T+ S L  C  +  +E 
Sbjct: 250 SMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEW 309

Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           G++ H   +R    I+P++     +V+LY + G   EA  V + +  + ++ +W  L+  
Sbjct: 310 GKQLHVQVIRNLPHIDPYVA--SAMVELYAKCGCFKEAKRVFSSLRDR-NSVSWTVLIGG 366

Query: 268 CRMYK-NTEMGELASRKLVELETKNHGAYVLL 298
              Y   +E  EL ++   EL   +  A   L
Sbjct: 367 FLQYGCFSESVELFNQMRAELMAVDQFALATL 398



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 138/300 (46%), Gaps = 37/300 (12%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V   +   D    +AM+   AKCG    A+++F  + +R+ ++W  ++ G+ Q G   E
Sbjct: 316 QVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSE 375

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           ++ LF+ M+   + +++ ++ +++S C +   +  G   H    ++     V +  +L+ 
Sbjct: 376 SVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLIS 435

Query: 133 MYSKCGNMN-------------------------------KAMDFFWGMKERNVYTWTSV 161
           MY+KCGN+                                KA +FF  M  RNV TW ++
Sbjct: 436 MYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAM 495

Query: 162 IGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           +G    +GA E  L+++S ++ +  V P+ VT+V++ RGC  +G  + G +       + 
Sbjct: 496 LGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLG-DQIIGHTVKV 554

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA 280
           G+         ++ +Y + GR+ EA    + +  K    +W A++     Y    MG+ A
Sbjct: 555 GLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLV-SWNAMITG---YSQHGMGKQA 610


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 270/447 (60%), Gaps = 5/447 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHL 76
           +  DV     +I    KCGD+  +  +F  +    R+ ++W ++LA   Q  +   A  +
Sbjct: 241 YREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMV 300

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F L    +V+  +  + SVLSAC  LG L+ GR  H    +  ++  + +G+ALVD+Y K
Sbjct: 301 F-LQARKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGK 359

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPNEVTFV 194
           CG++  A   F  M ERN+ TW ++IGG A  G  + +L LF  M     G+  + VT V
Sbjct: 360 CGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLV 419

Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           SVL  C   G VE G + F+SMR  YGIEP  EHY C+VDL GR+G +D A + I +MP+
Sbjct: 420 SVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPI 479

Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
            P    WGALL AC+M+  T++G++A+ KL EL+  + G +V+ SN+ A +  W+    V
Sbjct: 480 LPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIV 539

Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
           R+ M+  G+KK  G S + V   VH F A D  H + +EI+ ML ++   +K AGYV + 
Sbjct: 540 RKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDA 599

Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
           N  ++D+EEEEK   +  HSEK+A+AFGLI+L  GVPIRI KNLR+C DCH   K ISK+
Sbjct: 600 NLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKI 659

Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
             REIIVRD NRFH FK+G CSCK YW
Sbjct: 660 VGREIIVRDNNRFHRFKDGWCSCKDYW 686



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 5/258 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    +     +K G    AR MFDEMP R+   WNA ++   Q G+  +A+  F    
Sbjct: 143 DVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFL 202

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
             D + N ++  + L+AC  + +L+ GR  H +I R+R +  V++   L+D Y KCG++ 
Sbjct: 203 CVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIV 262

Query: 142 KAMDFF--WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            +   F   G   RNV +W S++  L  N   E++  +F L  +  V P +    SVL  
Sbjct: 263 SSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVF-LQARKEVEPTDFMISSVLSA 321

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +G +E GR    ++  +  +E  +     LVDLYG+ G ++ A  V  +MP + +  
Sbjct: 322 CAELGGLELGRS-VHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPER-NLV 379

Query: 260 AWGALLNACRMYKNTEMG 277
            W A++       + +M 
Sbjct: 380 TWNAMIGGYAHLGDVDMA 397



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 12/273 (4%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P  +C   +++  +K    + A+ +      R  + W ++++G     +   AL  F  M
Sbjct: 42  PSFLCNH-LVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNM 100

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   V  N+ +   V  A   L     G+  H    +    + V +G +  DMYSK G  
Sbjct: 101 RRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLR 160

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +A + F  M  RN+ TW + +     +G    ++  F         PN +TF + L  C
Sbjct: 161 PEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNAC 220

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA 258
             +  +E GR+ H   +R  Y  +  +  +  L+D YG+ G +  +  V +++   + + 
Sbjct: 221 ADIVSLELGRQLHGFIVRSRYRED--VSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNV 278

Query: 259 GAWGALLNACRMYKNTE-----MGELASRKLVE 286
            +W +LL A  + +N E     M  L +RK VE
Sbjct: 279 VSWCSLLAA--LVQNHEEERACMVFLQARKEVE 309



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 54/216 (25%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           +Y + G + Y ++VF  + E ++V   AMI   A  GDVD+A  +F EM           
Sbjct: 356 LYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTS--------- 406

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                 CG                + L+ V++VSVLSAC+  GA+++G       E  R 
Sbjct: 407 ----GSCG----------------IALSYVTLVSVLSACSRAGAVERGLQ---IFESMRG 443

Query: 121 KMTVTLG----TALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG------ 169
           +  +  G      +VD+  + G +++A +F   M     +  W +++G   M+G      
Sbjct: 444 RYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGK 503

Query: 170 -AGEKSLEL----------FSLMKQAGVRPNEVTFV 194
            A EK  EL          FS M  +  R  E T V
Sbjct: 504 IAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIV 539



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 108 GRWAHVYIERNR-LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           GR  H +I R     +   L   LV+MYSK    N A         R V TWTS+I G  
Sbjct: 26  GRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCV 85

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPW 225
            N     +L  FS M++  V PN+ TF  V +    + +   G++ H  +++    ++ +
Sbjct: 86  HNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVF 145

Query: 226 LEHYGC-LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           +   GC   D+Y + G   EA ++ ++MP + +   W A ++
Sbjct: 146 V---GCSAFDMYSKTGLRPEARNMFDEMPHR-NLATWNAYMS 183


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 180/441 (40%), Positives = 277/441 (62%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V    ++    + G  D ARK+FD M ER+ + WN++++  ++  +  E  +LF  MQ
Sbjct: 277 DQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQ 336

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  +  ++ ++L AC+ + AL  G+  H  I +++ K  V L  +L+DMY KCG + 
Sbjct: 337 EEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVE 396

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  M  +++ +W  ++   A+NG  E+ + LF  M ++GV P+ +TFV++L GC 
Sbjct: 397 YSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCS 456

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL E G   F+ M+ E+ + P LEHY CLVD+ GRAG++ EA+ VI  MP KP A  W
Sbjct: 457 DTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIW 516

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           G+LLN+CR++ N  +GE+A+++L  LE  N G YV++SNIYA++K WD V  +R++MK +
Sbjct: 517 GSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQR 576

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPR-YNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           GVKK  GCS ++V  ++  F AG     R  +E + +  E+   ++ +GY  NT+ V++D
Sbjct: 577 GVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHD 636

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           ++EE K + +C HSE++A  + LI   EGVPIRI KNLRVC DCH   K++S+V  R I+
Sbjct: 637 VDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIV 696

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD  RFHHF +G CSCK YW
Sbjct: 697 LRDTKRFHHFVDGICSCKDYW 717



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 9/261 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA---WNAMLAGYAQCGKSREALH 75
           H P ++ +  +I+  + C  +DLARK+FD++ +   +    W AM  GY++ G  R+AL 
Sbjct: 172 HNPKLLSK--LITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALI 229

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           ++  M    ++    S+   L AC  L  L  GR  H  I + + K+   +   L+ +Y 
Sbjct: 230 VYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYM 289

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           + G  + A   F GM ERNV TW S+I  L+      +   LF  M++  +  +  T  +
Sbjct: 290 ESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTT 349

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +L  C  V  +  G+E H   ++ +   +P +     L+D+YG+ G ++ +  V + M  
Sbjct: 350 ILPACSRVAALLTGKEIHAQILKSKE--KPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLT 407

Query: 255 KPHAGAWGALLNACRMYKNTE 275
           K  A +W  +LN   +  N E
Sbjct: 408 KDLA-SWNIMLNCYAINGNIE 427



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 12/177 (6%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++     +PDV    +++    KCG+V+ +R++FD M  +D  +WN ML  YA  G   E
Sbjct: 369 QILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEE 428

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG----T 128
            ++LF  M    V  + ++ V++LS C+  G  + G       ER + +  V+       
Sbjct: 429 VINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGL---SLFERMKTEFRVSPALEHYA 485

Query: 129 ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG---AGE-KSLELFSL 180
            LVD+  + G + +A+     M  + +   W S++    ++G    GE  + ELF L
Sbjct: 486 CLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVL 542


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 180/441 (40%), Positives = 277/441 (62%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D V    ++    + G  D ARK+FD M ER+ + WN++++  ++  +  E  +LF  MQ
Sbjct: 270 DQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQ 329

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +  +  ++ ++L AC+ + AL  G+  H  I +++ K  V L  +L+DMY KCG + 
Sbjct: 330 EEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVE 389

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  M  +++ +W  ++   A+NG  E+ + LF  M ++GV P+ +TFV++L GC 
Sbjct: 390 YSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCS 449

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GL E G   F+ M+ E+ + P LEHY CLVD+ GRAG++ EA+ VI  MP KP A  W
Sbjct: 450 DTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIW 509

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           G+LLN+CR++ N  +GE+A+++L  LE  N G YV++SNIYA++K WD V  +R++MK +
Sbjct: 510 GSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQR 569

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPR-YNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           GVKK  GCS ++V  ++  F AG     R  +E + +  E+   ++ +GY  NT+ V++D
Sbjct: 570 GVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHD 629

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           ++EE K + +C HSE++A  + LI   EGVPIRI KNLRVC DCH   K++S+V  R I+
Sbjct: 630 VDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIV 689

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD  RFHHF +G CSCK YW
Sbjct: 690 LRDTKRFHHFVDGICSCKDYW 710



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 9/261 (3%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA---WNAMLAGYAQCGKSREALH 75
           H P ++ +  +I+  + C  +DLARK+FD++ +   +    W AM  GY++ G  R+AL 
Sbjct: 165 HNPKLLSK--LITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALI 222

Query: 76  LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
           ++  M    ++    S+   L AC  L  L  GR  H  I + + K+   +   L+ +Y 
Sbjct: 223 VYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYM 282

Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
           + G  + A   F GM ERNV TW S+I  L+      +   LF  M++  +  +  T  +
Sbjct: 283 ESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTT 342

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
           +L  C  V  +  G+E H   ++ +   +P +     L+D+YG+ G ++ +  V + M  
Sbjct: 343 ILPACSRVAALLTGKEIHAQILKSKE--KPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLT 400

Query: 255 KPHAGAWGALLNACRMYKNTE 275
           K  A +W  +LN   +  N E
Sbjct: 401 KDLA-SWNIMLNCYAINGNIE 420



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 12/177 (6%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           ++     +PDV    +++    KCG+V+ +R++FD M  +D  +WN ML  YA  G   E
Sbjct: 362 QILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEE 421

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG----T 128
            ++LF  M    V  + ++ V++LS C+  G  + G       ER + +  V+       
Sbjct: 422 VINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGL---SLFERMKTEFRVSPALEHYA 478

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNG---AGE-KSLELFSL 180
            LVD+  + G + +A+     M  + +   W S++    ++G    GE  + ELF L
Sbjct: 479 CLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVL 535


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/471 (40%), Positives = 284/471 (60%), Gaps = 33/471 (7%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW----NAMLAGYAQCGKSREALH 75
           +P+ +  ++++ ACA   D D  R++   + + +  A     NA+++ YA+ G   EA  
Sbjct: 356 KPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARR 415

Query: 76  LF---------------------HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           +F                     H +   D+ ++  +  S++SA   +G L +G+  H  
Sbjct: 416 VFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAM 475

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
             +        +  +LV MYS+CG +  A   F  +K+RNV +WTS+I GLA +G  E++
Sbjct: 476 TLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERA 535

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           L LF  M   GV+PN+VT+++VL  C  VGLV EG+E+F SM+R++G+ P +EHY C+VD
Sbjct: 536 LSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVD 595

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           L  R+G + EAL+ IN+MP+K  A  W  LL ACR + N E+GE+A++ ++ELE ++   
Sbjct: 596 LLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAP 655

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPR---- 350
           YVLLSN+YA++  WD V  +R  M+   + K  G S +EV+   HEF AGD +HPR    
Sbjct: 656 YVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDI 715

Query: 351 YNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGV 410
           Y +++ ++GEI    K  GYV +T+ V++D+ +E KE  L +HSEK+A+AFGLI+     
Sbjct: 716 YGKLDTLVGEI----KGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPK 771

Query: 411 PIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           PIRI KNLRVC DCH   K +SK   REII+RD NRFH  K+G+CSC  YW
Sbjct: 772 PIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 125/242 (51%), Gaps = 9/242 (3%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G+   D+   +A+I   A+ GD+  ARK+FD + E+  + W  +++ Y Q   + EA+ +
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI 241

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F        + +  +M S++SACT LG++  G   H    R        +   LVDMY+K
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK 301

Query: 137 CGNMNKAMDF----FWGMKERNVYTWTSVIGGLAMNGAGE-KSLELFSLMKQAGVRPNEV 191
             N+ +AMD+    F  M++ +V +WT++I G   +G  E K + LF  M    ++PN +
Sbjct: 302 -SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHI 360

Query: 192 TFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           T+ S+L+ C  +   + GR+ H   ++        + +   LV +Y  +G ++EA  V N
Sbjct: 361 TYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGN--ALVSMYAESGCMEEARRVFN 418

Query: 251 KM 252
           ++
Sbjct: 419 QL 420



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 116/235 (49%), Gaps = 26/235 (11%)

Query: 32  ACAKCGDVDL------------ARKMFDEMPERDPIAWNAMLAGYAQCG-KSREALHLFH 78
           AC  CG VD+            A K+F+ M + D I+W A+++GY Q G +  + + LF 
Sbjct: 289 ACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFG 348

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    +K N ++  S+L AC ++   D GR  H ++ ++      T+G ALV MY++ G
Sbjct: 349 EMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESG 408

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            M +A   F  + ER++ +  +            +   L   + +  +  +  TF S++ 
Sbjct: 409 CMEEARRVFNQLYERSMISCIT----------EGRDAPLDHRIGRMDMGISSSTFASLIS 458

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
               VG++ +G++ H  +++  +G + ++ +   LV +Y R G L++A    N++
Sbjct: 459 AAASVGMLTKGQQLHAMTLKAGFGSDRFVSN--SLVSMYSRCGYLEDACRSFNEL 511



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 12/253 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           D V   ++++  ++CG V  AR +FD M   RD ++W AM +  A+ G  RE+L L   M
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEM 142

Query: 81  QIHDVKLNEVSMVSVLSACT--HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
               +  N  ++ +V  AC    L  L  G    +  +       + +G+AL+DM ++ G
Sbjct: 143 LESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNG 202

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F G+ E+ V  WT +I         E+++E+F    + G  P+  T  S++ 
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMIS 262

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKM---P 253
            C  +G V  G + H  ++R  +  +  +    C LVD+Y ++  +++A+D  NK+    
Sbjct: 263 ACTELGSVRLGLQLHSLALRMGFASDACVS---CGLVDMYAKSN-IEQAMDYANKVFERM 318

Query: 254 MKPHAGAWGALLN 266
            K    +W AL++
Sbjct: 319 RKNDVISWTALIS 331



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 62/226 (27%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVV-CQT------------------------AMISACA- 34
           MYAE GC+   ++VF+ ++E  ++ C T                        ++ISA A 
Sbjct: 403 MYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAAS 462

Query: 35  ----------------------------------KCGDVDLARKMFDEMPERDPIAWNAM 60
                                             +CG ++ A + F+E+ +R+ I+W +M
Sbjct: 463 VGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSM 522

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
           ++G A+ G +  AL LFH M +  VK N+V+ ++VLSAC+H+G + +G+     ++R+  
Sbjct: 523 ISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHG 582

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           L   +     +VD+ ++ G + +A++F   M  + +   W +++G 
Sbjct: 583 LIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGA 628



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 103 GALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTS 160
           G L  GR  H  + R + L     +  +L+ +YS+CG +  A + F GM+  R++ +WT+
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           +   LA NGA  +SL L   M ++G+ PN  T  +V   C
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC 161


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/444 (42%), Positives = 266/444 (59%), Gaps = 2/444 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV     +I    KC  V  +  +F  + + + ++W +M+  Y Q  +  +A  +F  
Sbjct: 241 EADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLR 300

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            +   ++  +  + SVLSAC  L  L+ G+  H    +  +   + +G+ALVDMY KCG+
Sbjct: 301 ARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGS 360

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPNEVTFVSVL 197
           +  A   F  M ERN+ TW ++IGG A  G  + ++ LF  M      V PN VTFV VL
Sbjct: 361 IEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVL 420

Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
             C   G V  G E F+SMR  YGIEP  EHY C+VDL GRAG +++A   I KMP++P 
Sbjct: 421 SACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPT 480

Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
              WGALL A +M+  +E+G++A+  L EL+  + G +VLLSN++A +  W+    VR+ 
Sbjct: 481 VSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKE 540

Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
           MK  G+KK  GCS I     VH F A D +H R +EI+ ML ++   ++ AGY+ +T+  
Sbjct: 541 MKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFA 600

Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
           ++D+EEEEK   +  HSEK+A+AFGLIS+  GVPIRI KNLR+C DCH   K IS +  R
Sbjct: 601 LFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGR 660

Query: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461
           EIIVRD N FH F++ +CSC+ YW
Sbjct: 661 EIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 128/271 (47%), Gaps = 5/271 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    +     +K G  + ARKMFDEMPER+   WNA L+     G+  +AL  F   +
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR 201

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + N ++  + L+AC     L  GR  H ++ ++  +  V++   L+D Y KC  + 
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F G+ + N  +W S+I     N   EK+  +F   ++ G+ P +    SVL  C 
Sbjct: 262 CSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACA 321

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            + ++E G+    ++  +  +   +     LVD+YG+ G +++A    ++MP + +   W
Sbjct: 322 GLSVLEVGKS-VHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPER-NLVTW 379

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNH 292
            A++     Y +    ++A     E+   +H
Sbjct: 380 NAMIGG---YAHQGQADMAVTLFDEMTCGSH 407



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 121/298 (40%), Gaps = 25/298 (8%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
           A+ +    P R  + W A++AG  Q G+   AL  F  M+   ++ N+ +      A   
Sbjct: 61  AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L +   G+  H    +      V +G +  DMYSK G   +A   F  M ERN+ TW + 
Sbjct: 121 LRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           +    + G  + +L  F   +  G  PN +TF + L  C     +  GR+       + G
Sbjct: 181 LSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQ-LHGFVLQSG 239

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELAS 281
            E  +     L+D YG+  ++  + ++I     KP+  +W +++ +   Y   +  E A 
Sbjct: 240 FEADVSVANGLIDFYGKCHQVGCS-EIIFSGISKPNDVSWCSMIVS---YVQNDEEEKAC 295

Query: 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVH 339
             LV L  +  G                  I     M +  +    G SV+EV + VH
Sbjct: 296 --LVFLRARKEG------------------IEPTDFMVSSVLSACAGLSVLEVGKSVH 333



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 37/177 (20%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   ++ FD + E ++V   AMI   A  G  D+A  +FDEM           
Sbjct: 354 MYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM----------- 402

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                 CG              H V  N V+ V VLSAC+  G+++ G       E  R 
Sbjct: 403 -----TCGS-------------HRVAPNYVTFVCVLSACSRAGSVNVGM---EIFESMRG 441

Query: 121 KMTVTLG----TALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGE 172
           +  +  G      +VD+  + G + +A  F   M  R  V  W +++G   M G  E
Sbjct: 442 RYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 498


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 186/443 (41%), Positives = 265/443 (59%), Gaps = 13/443 (2%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           +  D+    A++S  A+CG V  A   FD++  +D ++WN++++G+AQ G   EAL++F 
Sbjct: 570 YSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFA 629

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M    +++N  +  S +SA  ++  +  G+  H  I +        +  AL+ +Y+KCG
Sbjct: 630 QMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCG 689

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
            ++               +W S+I G + +G G ++L+LF  MKQ  V PN VTFV VL 
Sbjct: 690 TIDDI-------------SWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLS 736

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C  VGLV+EG  +F SM   + + P  EHY C+VDL GR+G L  A   + +MP++P A
Sbjct: 737 ACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDA 796

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL+AC ++KN ++GE A+  L+ELE K+   YVL+SN+YA S  WD     RQ+M
Sbjct: 797 MVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMM 856

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K +GVKK PG S +EVD  VH FFAGD+ HPR + I   L  +  R    GYV   N ++
Sbjct: 857 KDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLL 916

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
            D E  +K+ T   HSE++AIAFGL+SL    P+ + KNLRVC DCH+  K +SK+ +R 
Sbjct: 917 SDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRV 976

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           IIVRD  RFHHFK G CSCK YW
Sbjct: 977 IIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V   + +I   AK G +D A K+F  + E D ++W AM+AGY Q  K  EAL+LF  MQ
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +K + +   S +SAC  + ALDQGR  H     +     +++G ALV +Y++CG + 
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVR 591

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  +  ++  +W S++ G A +G  E++L +F+ M +AG+  N  TF S +    
Sbjct: 592 EAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAA 651

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
            +  V  G++    M R+ G +   E    L+ LY + G +D+
Sbjct: 652 NIANVRIGKQ-IHGMIRKTGYDSETEVSNALITLYAKCGTIDD 693



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 129/250 (51%), Gaps = 20/250 (8%)

Query: 17  GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
           G      VC  A+++  ++ G++  A ++F  M +RD +++N++++G AQ G    AL L
Sbjct: 281 GFSSETYVCN-ALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALAL 339

Query: 77  FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
           F  M +   K + V++ S+LSAC  +GAL  G+  H Y  +  +   + +  +L+D+Y K
Sbjct: 340 FKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVK 399

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C ++  A +FF    + +                  KS ++F+ M+  G+ PN+ T+ S+
Sbjct: 400 CSDIKTAHEFFLCYGQLDNLN---------------KSFQIFTQMQIEGIVPNQFTYPSI 444

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L+ C  +G  + G + H   ++  +    ++     L+D+Y + G+LD AL +  ++  +
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQFNVYVS--SVLIDMYAKHGKLDHALKIFRRLK-E 501

Query: 256 PHAGAWGALL 265
               +W A++
Sbjct: 502 NDVVSWTAMI 511



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 19/246 (7%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+V + +++    KC D+  A + F                 Y Q     ++  +F  MQ
Sbjct: 386 DIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQ 430

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           I  +  N+ +  S+L  CT LGA D G   H  + +   +  V + + L+DMY+K G ++
Sbjct: 431 IEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLD 490

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  +KE +V +WT++I G   +    ++L LF  M+  G++ + + F S +  C 
Sbjct: 491 HALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACA 550

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
            +  +++GR+ H  S    Y  +  L     LV LY R G++ EA    +++  K +  +
Sbjct: 551 GIQALDQGRQIHAQSCLSGYSDD--LSIGNALVSLYARCGKVREAYAAFDQIYAKDNV-S 607

Query: 261 WGALLN 266
           W +L++
Sbjct: 608 WNSLVS 613



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 38/335 (11%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + + +  G      +C   +I    K G +  A+K+F+ +  RD ++W AM++G +Q G 
Sbjct: 187 HAKTITSGFESSTFICN-PLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGY 245

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EA+ LF   QI            VLSACT +   + G+  H  + +        +  A
Sbjct: 246 EEEAMLLF--CQI------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNA 291

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           LV +YS+ GN++ A   F  M +R+  ++ S+I GLA  G   ++L LF  M     +P+
Sbjct: 292 LVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPD 351

Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL-------------- 235
            VT  S+L  C  VG +  G++ F S   + G+   +   G L+DL              
Sbjct: 352 CVTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF 410

Query: 236 --YGRAGRLDEALDVINKMPMK---PHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290
             YG+   L+++  +  +M ++   P+   + ++L  C     T++GE    ++++   +
Sbjct: 411 LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQ 470

Query: 291 NHGAYV--LLSNIYAESKNWDRVINVRQIMKAKGV 323
               YV  +L ++YA+    D  + + + +K   V
Sbjct: 471 -FNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 32/254 (12%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           GCL   +  +DG+          +I      GD++ A  +FDEMP R    WN +   + 
Sbjct: 90  GCLN-SRSFYDGL---------KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFI 139

Query: 66  QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA---HVYIERNRLKM 122
                     LF  M   +V+ +E     VL  C+  G     R+    H     +  + 
Sbjct: 140 AERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCS--GNAVSFRFVEQIHAKTITSGFES 197

Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
           +  +   L+D+Y K G ++ A   F  +K R+  +W ++I GL+ NG  E+++ LF  + 
Sbjct: 198 STFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI- 256

Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
                        VL  C  V   E G++ H   +++ +  E ++     LV LY R+G 
Sbjct: 257 -------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYV--CNALVTLYSRSGN 301

Query: 242 LDEALDVINKMPMK 255
           L  A  + + M  +
Sbjct: 302 LSSAEQIFHCMSQR 315



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 33/221 (14%)

Query: 47  DEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105
           DE+PE+ + +  NA   GY             HLM+ H V+ N  + + +L  C +    
Sbjct: 50  DEIPEKENEMDGNASGIGY------------LHLMEQHGVRANSQTFLWLLEGCLN---- 93

Query: 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGL 165
                            +   G  L+D Y   G++N A++ F  M  R++  W  +    
Sbjct: 94  ---------------SRSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTF 138

Query: 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
                  +   LF  M    V  +E  F  VLRGC    +     E   +     G E  
Sbjct: 139 IAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESS 198

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
                 L+DLY + G L  A  V   +  +    +W A+++
Sbjct: 199 TFICNPLIDLYFKNGFLSSAKKVFENLKARDSV-SWVAMIS 238


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/437 (42%), Positives = 269/437 (61%), Gaps = 3/437 (0%)

Query: 28  AMISACAK---CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           A++ A A+    G    AR +FDEMP RD + W ++L G A+ G    A+  +H M    
Sbjct: 85  ALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYHGMVAAG 144

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           V+ +E ++ +VLS+C    ALD GR  H       L    ++G +LV MY+K G ++ A 
Sbjct: 145 VQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALHDAR 204

Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
             F  M  R   TWT++I G A NG G +SLE+++ M ++G RP+ VTF+ +L  C   G
Sbjct: 205 AVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLFACSHAG 264

Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           LV+ GR+HF SM  +YGI P  +HY C+VDL GRAGRLDEA+D++N+   +  A  W +L
Sbjct: 265 LVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSL 324

Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
           L ACR+++N E+ E A+  +  L+  +   YV+LSN+Y+ ++ W  V  +R +MKA+G+ 
Sbjct: 325 LGACRVHRNAELAERAAEMVWRLDPTDAVPYVMLSNLYSRARRWGDVARIRALMKARGIT 384

Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
           K PGCS + V+   H F   D  HPR  EI   + E++ R++  GYV +T+  + D   E
Sbjct: 385 KEPGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTERIRAEGYVPDTDWALQDEAPE 444

Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
            +E  L  HSE++A+AFGL+++    PIR+ KNLRVC DCH   KM++K + R II+RD 
Sbjct: 445 GRERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKAYGRVIILRDA 504

Query: 445 NRFHHFKEGKCSCKGYW 461
           N FHH K+G+CSC  YW
Sbjct: 505 NCFHHMKDGECSCGDYW 521


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/442 (39%), Positives = 280/442 (63%), Gaps = 1/442 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  +   ++++    K G++  ARK+FD +PERD ++  A+++GYAQ G   EAL LF  
Sbjct: 174 ESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQ 233

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +    ++ N V+  ++L++ + L +L+ G+  H  I R  L   + L  +L+DMYSKCG 
Sbjct: 234 LYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGK 293

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +  +   F  M +R+  +W +++ G   +G G++ ++LF  M +  V+P+ VT ++VL G
Sbjct: 294 LLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSG 352

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C   GLV+EG + FD + +E      + HYGC++DL GR+G+L +ALD+I  MP +P   
Sbjct: 353 CSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPA 412

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WG+LL ACR++ N  +GE+ ++KL+++E  N G YV+LSNIYA +  W  V  VR++M 
Sbjct: 413 IWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLML 472

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
              V K P  S I +D+ +H F + +  HPR  +I   + E+   +K AG+V + + V++
Sbjct: 473 ENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLH 532

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+++E+KE  L  HSEK+AI FGL++   G+ I+++KNLR+C DCH+  K +SKV+ REI
Sbjct: 533 DVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREI 592

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
            +RD+NRFH  K+G C+C  YW
Sbjct: 593 SLRDKNRFHLLKDGACTCGDYW 614



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 139/248 (56%), Gaps = 4/248 (1%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           + P V   T +I    +CG +D AR + D MPER+ ++W AM++GY+Q G+  EAL LF 
Sbjct: 72  YRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFI 131

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M     K NE ++ +VL++C    ++ Q    H  + +   +  + +G++L+DMY K G
Sbjct: 132 RMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSG 191

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           N+ +A   F  + ER+  + T++I G A  G  +++L+LF  +  +G++ N VTF ++L 
Sbjct: 192 NIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLT 251

Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
               +  +  G++ H   +R+E      L++   L+D+Y + G+L  +  V + MP +  
Sbjct: 252 SLSGLASLNYGKQVHGLILRKELPFFIVLQN--SLIDMYSKCGKLLYSRRVFDNMPQRS- 308

Query: 258 AGAWGALL 265
           A +W A+L
Sbjct: 309 AISWNAML 316



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
           + ++AC    AL +GR  H ++ + R +  V L T L+ +Y +CG ++ A +   GM ER
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
           NV +WT++I G + +G   ++LELF  M +AG + NE T  +VL  C V   +++  E  
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQ-VEQV 164

Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
            S+  +   E  +     L+D+YG++G + EA  V + +P
Sbjct: 165 HSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP 204


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 272/440 (61%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    ++I+   K GD+  A ++F+ +P+ + ++WN+++A     G +RE +  F+ M+
Sbjct: 171 EVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMR 230

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +E +++++L AC HLG        H  +        +T+ TAL+D Y+K G ++
Sbjct: 231 RLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLS 290

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  +   +   WT+++ G A +G G ++++LF  M   G+ P+ VTF  +L  C 
Sbjct: 291 ASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACS 350

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EG+ +F+ M   YGIEP ++HY C+VDL GR G L++A +VI  MPM+P+AG W
Sbjct: 351 HSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVW 410

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACR++ N E+G+  +  L+ +E  +   Y++LSN+Y+ S++W     VR ++K +
Sbjct: 411 GALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKER 470

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+K+ PG S IE   + H FF GD +HP   +I   L E+  +++ AGY + T  V+ D+
Sbjct: 471 GLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDV 530

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE KED + KHSEK+AIAFGL+  KEG  + I KNLR+C DCH   K+IS +  R II+
Sbjct: 531 EEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIII 590

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHF +G CSC  YW
Sbjct: 591 RDPKRFHHFSDGFCSCADYW 610



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 134/254 (52%), Gaps = 7/254 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +VF  +   D      +++   K G  + A K+FD+MP +D ++WN++++G+++C     
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--LHM 121

Query: 73  ALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           +L  F+ M+    VK NEV+++S++SAC+  GALD G++ H +  +    + V +  +L+
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           +MY K G++  A   F  + + N  +W S+I     NG   + ++ F+ M++ G+  +E 
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           T +++L+ C  +G V +  E    +    G    +     L+D Y + GRL  +  V  +
Sbjct: 240 TILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 252 MPMKPHAGAWGALL 265
           +       AW A+L
Sbjct: 299 VGFADRV-AWTAML 311



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 13/219 (5%)

Query: 54  PIAWNA-MLAGYAQCGKSREALHL---FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P+ WN+ +L  +    +++  L L   FHL  +      E  + ++L A     ++   R
Sbjct: 2   PLRWNSSILYNFFIQSRTQYPLLLHRSFHL--VRQCATPEAIVSALLIAVNSCPSISNCR 59

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
             H  + ++ L     +G  LV  Y+K G    A+  F  M  +++ +W S+I G +   
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-- 117

Query: 170 AGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
               SL  F  MK +  V+PNEVT +S++  C   G ++ G+ +      + G    ++ 
Sbjct: 118 CLHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGK-YIHGFGIKVGGTLEVKV 174

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              L+++YG++G L  A  +   +P  P+  +W +++ A
Sbjct: 175 ANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/474 (39%), Positives = 276/474 (58%), Gaps = 46/474 (9%)

Query: 34  AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
           +KCG+++ AR +F ++ + D +++NAM++GY    ++  ++ LF  + +   K+N  S+V
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 94  SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
            ++      G L   R  H +  ++ +    ++ TAL  +YS+   +  A   F    E+
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT--------------------- 192
           ++ +W ++I G A NG  EK++ LF  M++  VRPN VT                     
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH 432

Query: 193 -------------------------FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
                                    F+SVL  C   GLV EG E F SM  ++G EP  E
Sbjct: 433 DLINRESFESNIFMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPE 492

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
           HY C+VDL GRAG LD+ALD I KMP++P    WGALL AC ++K+  +  LAS KL EL
Sbjct: 493 HYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFEL 552

Query: 288 ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET 347
           + +N G YVLLSNIY+  +N+    +VR ++K + + K PGC++IEV   +H F +GD++
Sbjct: 553 DPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQS 612

Query: 348 HPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLK 407
           HP+   I  ML +++ +++ AG+   T   ++D+EEEEKE  +  HSEK+AIAFGLI+ +
Sbjct: 613 HPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSE 672

Query: 408 EGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            G  IRI+KNLRVC DCH+ TK ISK+  R I+VRD NRFHHFK+G CSC  YW
Sbjct: 673 PGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 726



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 5/191 (2%)

Query: 10  YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           + Q + +G+H  D+V  T +    +    +D A  +F  +P  D   +N ++  ++    
Sbjct: 30  HAQIILNGLHN-DLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNS 88

Query: 70  SREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
              A+ L+ HL +   ++ +  +   V+S  + LG         +          + +G+
Sbjct: 89  PSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAG---FGSDLFVGS 145

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           A+V  Y K   +  A   F GM ER+   W +++ GL  N   ++++ +F  M + G+  
Sbjct: 146 AIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF 205

Query: 189 NEVTFVSVLRG 199
           +  T  +VL G
Sbjct: 206 DSTTVAAVLPG 216


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 172/435 (39%), Positives = 274/435 (62%), Gaps = 1/435 (0%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           +++   AKC   + A  +F  +P+R  ++W A+++GY Q G     L LF  M+  +++ 
Sbjct: 391 SLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRA 450

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           ++ +  +VL A     +L  G+  H +I R+     V  G+ LVDMY+KCG++  A+  F
Sbjct: 451 DQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVF 510

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M +RN  +W ++I   A NG GE ++  F+ M ++G++P+ V+ + VL  C   G VE
Sbjct: 511 EEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVE 570

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +G E+F +M   YGI P  +HY C++DL GR GR  EA  ++++MP +P    W ++LNA
Sbjct: 571 QGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630

Query: 268 CRMYKNTEMGELASRKLVELET-KNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           CR++KN  + E A+ KL  +E  ++  AYV +SNIYA +  W++V +V++ M+ +G+KK+
Sbjct: 631 CRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKV 690

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
           P  S +EV+ ++H F + D+THP  +EI   + E++  ++  GY  +T+ V+ D++E+ K
Sbjct: 691 PAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMK 750

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
            ++L  HSE++A+AF LIS  EG PI ++KNLR C DCH   K+ISK+  REI VRD +R
Sbjct: 751 IESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSR 810

Query: 447 FHHFKEGKCSCKGYW 461
           FHHF EG CSC  YW
Sbjct: 811 FHHFSEGVCSCGDYW 825



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 2/226 (0%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
            R +FDEMPE D +++N +++ Y+Q  +   +LH F  MQ            ++LS   +
Sbjct: 304 TRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN 363

Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
           L +L  GR  H           + +G +LVDMY+KC    +A   F  + +R   +WT++
Sbjct: 364 LSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTAL 423

Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
           I G    G     L+LF+ M+ + +R ++ TF +VL+       +  G++    + R   
Sbjct: 424 ISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGN 483

Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +E      G LVD+Y + G + +A+ V  +MP + +A +W AL++A
Sbjct: 484 LENVFSGSG-LVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISA 527



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 11/255 (4%)

Query: 6   GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
           G +   +KV+D +   + V    MIS   K GDV  AR +FD MP+R  + W  ++  YA
Sbjct: 62  GQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYA 121

Query: 66  QCGKSREALHLFHLM-QIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           +     EA  LF  M +     L + V+  ++L  C    A+ Q     V+    +L   
Sbjct: 122 RNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN--DAVPQNAVGQVHAFAVKLGFD 179

Query: 124 ----VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
               +T+   L+  Y +   ++ A   F  + E++  T+ ++I G   +G   +S+ LF 
Sbjct: 180 TNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFL 239

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGR 238
            M+Q+G +P++ TF  VL+   VVGL +    +   ++    G          ++D Y +
Sbjct: 240 KMRQSGHQPSDFTFSGVLKA--VVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSK 297

Query: 239 AGRLDEALDVINKMP 253
             R+ E   + ++MP
Sbjct: 298 HDRVLETRMLFDEMP 312



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 6/248 (2%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P +     ++ +  +   +DLA  +F+E+PE+D + +N ++ GY + G   E++HLF  M
Sbjct: 182 PFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKM 241

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +    + ++ +   VL A   L     G+  H            ++G  ++D YSK   +
Sbjct: 242 RQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRV 301

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
            +    F  M E +  ++  VI   +     E SL  F  M+  G       F ++L   
Sbjct: 302 LETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIA 361

Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHA 258
             +  ++ GR+ H  ++         + H G  LVD+Y +    +EA  +   +P +   
Sbjct: 362 ANLSSLQMGRQLHCQAL---LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTV 418

Query: 259 GAWGALLN 266
            +W AL++
Sbjct: 419 -SWTALIS 425



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           K TV+  T ++  + K G+++ A D F  M +R V TWT ++G  A N   +++ +LF  
Sbjct: 77  KNTVSTNT-MISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135

Query: 181 MKQAG--VRPNEVTFVSVLRGCC-VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           M ++     P+ VTF ++L GC   V     G+ H  +++  +   P+L     L+  Y 
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYC 195

Query: 238 RAGRLDEALDVINKMPMK 255
              RLD A  +  ++P K
Sbjct: 196 EVRRLDLACVLFEEIPEK 213


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 272/440 (61%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +V    ++I+   K GD+  A ++F+ +P+ + ++WN+++A     G +RE +  F+ M+
Sbjct: 171 EVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMR 230

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +E +++++L AC HLG        H  +        +T+ TAL+D Y+K G ++
Sbjct: 231 RLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLS 290

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  +   +   WT+++ G A +G G ++++LF  M   G+ P+ VTF  +L  C 
Sbjct: 291 ASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACS 350

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV EG+ +F+ M   YGIEP ++HY C+VDL GR G L++A +VI  MPM+P+AG W
Sbjct: 351 HSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVW 410

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACR++ N E+G+  +  L+ +E  +   Y++LSN+Y+ S++W     VR ++K +
Sbjct: 411 GALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKER 470

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G+K+ PG S IE   + H FF GD +HP   +I   L E+  +++ AGY + T  V+ D+
Sbjct: 471 GLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDV 530

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EEE KED + KHSEK+AIAFGL+  KEG  + I KNLR+C DCH   K+IS +  R II+
Sbjct: 531 EEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIII 590

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHF +G CSC  YW
Sbjct: 591 RDPKRFHHFSDGFCSCADYW 610



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 133/254 (52%), Gaps = 7/254 (2%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +VF  +   D      +++   K G  + A K+FD+MP +D ++WN++++G+++C     
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--LHM 121

Query: 73  ALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
           +L  F+ M+    VK NEV+++S++SAC   GALD G++ H +  +    + V +  +L+
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           +MY K G++  A   F  + + N  +W S+I     NG   + ++ F+ M++ G+  +E 
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           T +++L+ C  +G V +  E    +    G    +     L+D Y + GRL  +  V  +
Sbjct: 240 TILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 252 MPMKPHAGAWGALL 265
           +       AW A+L
Sbjct: 299 VGFADRV-AWTAML 311



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 13/219 (5%)

Query: 54  PIAWNA-MLAGYAQCGKSREALHL---FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109
           P+ WN+ +L  +    +++  L L   FHL  +      E  + ++L A     ++   R
Sbjct: 2   PLRWNSSILYNFFIQSRTQYPLLLHRSFHL--VRQCATPEAIVSALLIAVNSCPSISNCR 59

Query: 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
             H  + ++ L     +G  LV  Y+K G    A+  F  M  +++ +W S+I G +   
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-- 117

Query: 170 AGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
               SL  F  MK +  V+PNEVT +S++  C   G ++ G+ +      + G    ++ 
Sbjct: 118 CLHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGK-YIHGFGIKVGGTLEVKV 174

Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              L+++YG++G L  A  +   +P  P+  +W +++ A
Sbjct: 175 ANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/460 (41%), Positives = 279/460 (60%), Gaps = 8/460 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+ G +   +++FD I  PDV+   AM+ A +    +D A+ MFD + ++  ++WN M+
Sbjct: 461 YAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMV 520

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A YAQ G   EA  +F  +   +V  + V +V    A  H   L + R     ++    K
Sbjct: 521 AAYAQAGNLDEAKSIFDSIPHKNVVSHNVMIV----AYAHNMDLAEARRIFYSMDE---K 573

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
            TVT  TA+V M ++ G + +A + F  M  RNV +W S+I G+A  G G  ++    +M
Sbjct: 574 DTVTW-TAMVAMVAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVM 632

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           +  G +P+ +TF+ +L  C  VGLVEEG  HF SM+ ++G+ PW EHY  +VD+ GRAG+
Sbjct: 633 RNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQ 692

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L  A +++  MP  P  GAWG+LL +C+ + + ++G  A+  L++ + ++ G YVLL+N+
Sbjct: 693 LGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLLANM 752

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           Y+        + VR  MKA+GVKK PG S+I VD  +H F AG+ +HPR+ EI   L  +
Sbjct: 753 YSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRL 812

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
              +K AGY  +T  V++ I +EEKE  L  HSEK+AIAF  I+ + G PIRI+KNLRVC
Sbjct: 813 QELMKKAGYQPDTKAVLHSILDEEKEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRVC 872

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH  TK +SK+  REIIVRD  RFH+F+ G CSC  YW
Sbjct: 873 SDCHTATKFLSKLLQREIIVRDGYRFHNFENGTCSCGDYW 912



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 20/256 (7%)

Query: 2   YAELGCLGYCQKVFD-GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           Y+  G +   +++FD      D V   A++SA A+ G + LAR  F+ MP  D +AW A+
Sbjct: 305 YSRHGLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLHLARSTFERMPRHDVVAWTAL 364

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNR 119
           +A   Q G+  EA  L+ L+   D+    V+  +++ A    G L + +  +  + ERNR
Sbjct: 365 IAVSGQNGQLEEAEVLYDLIPERDL----VAWTALIQAYGVNGKLTESKRVYALMPERNR 420

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
           +       TA++  YS+ G + +A      + + +  T TS+I   A NG  + + E+F 
Sbjct: 421 VSH-----TAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFD 475

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            +K     P+ +   +++       +++  +  FDS++++      L  +  +V  Y +A
Sbjct: 476 SIKN----PDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKT-----LVSWNTMVAAYAQA 526

Query: 240 GRLDEALDVINKMPMK 255
           G LDEA  + + +P K
Sbjct: 527 GNLDEAKSIFDSIPHK 542



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 124/267 (46%), Gaps = 18/267 (6%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY +   +   Q VF+ + EP+V  +  ++ A ++ GD+  A+ +FD++P  + ++WN++
Sbjct: 56  MYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVVSWNSL 115

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +AG++Q G    A  +F  M     + +  S  S+++     G L     A    +R   
Sbjct: 116 IAGFSQHGFMSNADEIFARMP----RWSSSSWNSMITGYAQSGDLAS---ATAMFDRTP- 167

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  V    AL+  YS    + +A   F     R+  +W +++   A +G  + + E+F  
Sbjct: 168 EHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDR 227

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
             Q  +    V+   +++ C V  ++    E F +M     +      Y  ++ +Y   G
Sbjct: 228 TPQQDI----VSCTLMIKACAVQEILGHAVEIFAAMPDRNAVS-----YSFMIQIYIDQG 278

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNA 267
           ++ EA ++  +MP +     W ++L+A
Sbjct: 279 KIGEAENLSRRMPQQ-DPTLWTSMLSA 304



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 118/298 (39%), Gaps = 22/298 (7%)

Query: 91  SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
           ++ + + +C     L QGR  H  I     +  + L   ++ MY KC  ++ A   F  +
Sbjct: 14  ALATAIRSCGIAKDLAQGRKIHNQIADGEHRGNLFLQNLIIQMYGKCSRIDDAQAVFNEL 73

Query: 151 KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210
            E NV++   ++   + NG    +  +F  +    V    V++ S++ G    G +    
Sbjct: 74  PEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNV----VSWNSLIAGFSQHGFMSNAD 129

Query: 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
           E F  M R +    W      ++  Y ++G L  A  + ++ P + +  +W AL+     
Sbjct: 130 EIFARMPR-WSSSSW----NSMITGYAQSGDLASATAMFDRTP-EHNVISWNALITG--- 180

Query: 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK----L 326
           Y +  M   A         ++  ++  +   YA+S + D    V      + +      +
Sbjct: 181 YSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMI 240

Query: 327 PGCSVIEVDREVHEFFAG--DETHPRYN---EIEVMLGEISRRLKLAGYVANTNPVMY 379
             C+V E+     E FA   D     Y+   +I +  G+I     L+  +   +P ++
Sbjct: 241 KACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLW 298


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/438 (44%), Positives = 278/438 (63%), Gaps = 4/438 (0%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           T +I   AK G V  A  +F  MPER+ ++W AM+  YA+  +  +A+ LF  M   D  
Sbjct: 224 TTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDED 283

Query: 87  L--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144
           L  N V++V +L A   + AL QG+  H YI R      V++  AL+ MY KCG +    
Sbjct: 284 LVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGR 343

Query: 145 DFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
             F  +  R +V +W ++I G  M+G G +++++F  M Q GV PN +TF+SVL  C   
Sbjct: 344 HIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHA 403

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           GLV+EG+  F+SM  +Y + P  EHY C+VDL GRAG LDEA+++I  M ++P    WG+
Sbjct: 404 GLVDEGKRLFESMV-DYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGS 462

Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
           LL ACR++++ E  E+A  +L +LE +N G YVLL++IYA +K    V  ++ +++   +
Sbjct: 463 LLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHAL 522

Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
           +K+PGCS IEV + +H F + D  +P+  E++ ++GE   ++K  GYV +T  V+YDIEE
Sbjct: 523 EKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEE 582

Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
           EEKE  L  HSEK+A+AFGLI+   G  IRI KNLR+C DCH VTK ISK   REIIVRD
Sbjct: 583 EEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRD 642

Query: 444 RNRFHHFKEGKCSCKGYW 461
            NRFHHF++G CSC  YW
Sbjct: 643 VNRFHHFRDGICSCGDYW 660



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 10/264 (3%)

Query: 16  DGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
           D +   D    T +I A A  G++  AR++FDE P +    WNA+L   A      EAL 
Sbjct: 107 DPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALA 166

Query: 76  LFHLMQIHDVKLNEVSMVSVLSAC-----THLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
               M    V ++  S    L AC     +H+ A    R  H +  R    +   + T L
Sbjct: 167 RLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTL 226

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVRP 188
           +D Y+K G ++ A   F  M ERNV +WT++IG  A N     ++ LF  M      + P
Sbjct: 227 IDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVP 286

Query: 189 NEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           N VT V +L     V  + +G+  H   +RR  G +  +     L+ +Y + G L+    
Sbjct: 287 NSVTIVCILHAFAGVNALGQGKLLHAYILRR--GFDSLVSVLNALMAMYMKCGCLEAGRH 344

Query: 248 VINKMPMKPHAGAWGALLNACRMY 271
           + + +  +    +W  L++   M+
Sbjct: 345 IFDLIGHRKDVVSWNTLISGYGMH 368


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/440 (41%), Positives = 273/440 (62%), Gaps = 3/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+     +I +  K G  D+A+K+F +M  RD + WN+M+ GY +  +  +AL +F  M 
Sbjct: 133 DLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRML 192

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ +  +  SV++AC  LGAL   +W H  +   R+++   L  AL+DMY+KCG ++
Sbjct: 193 SAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRID 252

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            +   F  +   +V  W ++I GLA++G    +  +FS M+   V P+ +TF+ +L  C 
Sbjct: 253 VSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACS 312

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEGR++F  M+  + I+P LEHYG +VDL GRAG ++EA  VI +M M+P    W
Sbjct: 313 HCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIW 372

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ACR+++  E+GE+A   +  LE+   G +VLLSN+Y    NWD    VR++MK +
Sbjct: 373 RALLSACRIHRKKELGEVAIANISRLES---GDFVLLSNMYCSLNNWDGAERVRRMMKTR 429

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           GV+K  G S +E+   +H+F A  ++HP    I  +L  + +R KL G+   T+ V+ D+
Sbjct: 430 GVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKLEGFTPLTDLVLMDV 489

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
            EEEKE+ L  HSEK+A+A+ ++    G  IRI KNLR+C DCH+  K++SK+ NR+IIV
Sbjct: 490 SEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIKIVSKILNRKIIV 549

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RDR RFH F+ G CSCK YW
Sbjct: 550 RDRIRFHQFEGGVCSCKDYW 569



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 10/170 (5%)

Query: 3   AELGCLGYCQKVFDGIHEPDV----VCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
           A LG LG  + V   + E  V    +   A+I   AKCG +D++R++F+E+       WN
Sbjct: 211 ARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWN 270

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
           AM++G A  G + +A  +F  M++  V  + ++ + +L+AC+H G +++GR  +  + +N
Sbjct: 271 AMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGR-KYFGMMQN 329

Query: 119 RLKMTVTL---GTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           R  +   L   GT +VD+  + G M +A      M+ E ++  W +++  
Sbjct: 330 RFMIQPQLEHYGT-MVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSA 378


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/440 (40%), Positives = 275/440 (62%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV   +A++   AKCG++  AR++FDEMPER+ ++W+A++ GYA  G    AL +F    
Sbjct: 160 DVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGMHPSALCIFRSAL 219

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V++N+ ++  ++  C      + G   H    +  L  +  +G++LV +YSKCG ++
Sbjct: 220 EEAVQVNDFTVSCIVRVCAAATLFELGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVD 279

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F    ERN+  W +V+   A +G    + E F+ M+ AG RPN +TF+ +L  C 
Sbjct: 280 CAYRVFSAAPERNLGIWNAVLIASAQHGHTSTAFERFTKMQHAGFRPNFITFLCLLTACS 339

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EG+ +F S+ +EY IEP +EHY  +VDL GR GR+ EALD+I  MPM+P    W
Sbjct: 340 HAGLVDEGKRYF-SLMKEYRIEPEVEHYAAMVDLLGRVGRITEALDLIESMPMEPPDSVW 398

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
           GALL ACRM+K+ +   +A+++L E  +++ GA++LLS+ YA +         R+ M+  
Sbjct: 399 GALLMACRMFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRDA 458

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G++K  G S +E   EVH F +    HPR NEI  +L ++  ++ +AGYVA+T+ V+ D+
Sbjct: 459 GIRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMAVAGYVADTSAVVKDV 518

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           + +EK  +L  HSE++AIA GL+ + EGVPIR++KNLRVC DCH+  K +SK   R +++
Sbjct: 519 DRDEKCASLGYHSERLAIALGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRVVVL 578

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFH F++G CSC  +W
Sbjct: 579 RDNRRFHRFEDGLCSCGDFW 598



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 14/273 (5%)

Query: 14  VFDGIHEPDVVCQTAMI-----SACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQC 67
           +  G H P V    A++     +  A+C   +L+ + F ++P    P AW+++++ +AQ 
Sbjct: 41  LLKGGHLPAVASSHALLAHHLLTFYARCSLPELSLRAFLDLPASPSPAAWSSLISSFAQN 100

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA----HVYIERNRLKMT 123
           G    A   F  M    V   + S+     A        +   A    H    +      
Sbjct: 101 GLPAAAFDAFRRMLAAGVPATDRSIPPAAKAVAAAADSSRPPLAPHALHGLASKTPFAGD 160

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
           V +G+A++DMY+KCGN++ A   F  M ERNV +W+++IGG A  G    +L +F    +
Sbjct: 161 VFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGMHPSALCIFRSALE 220

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
             V+ N+ T   ++R C    L E G + H  S++      P++     LV LY + G +
Sbjct: 221 EAVQVNDFTVSCIVRVCAAATLFELGAQVHARSIKTALDASPFVG--SSLVSLYSKCGLV 278

Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
           D A  V +  P + + G W A+L A   + +T 
Sbjct: 279 DCAYRVFSAAPER-NLGIWNAVLIASAQHGHTS 310


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 187/450 (41%), Positives = 270/450 (60%), Gaps = 2/450 (0%)

Query: 13  KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
           +V+   +  DV     ++   A+CG    A   F+ +  ++ I WN +++G+AQ G   E
Sbjct: 471 RVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEE 530

Query: 73  ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
           AL +F  M     K N  + VS +SA  +L  + QG+  H  + +        +  AL+ 
Sbjct: 531 ALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALIS 590

Query: 133 MYSKCGNMNKA-MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
           +Y KCG++  A MDFF  M +RN  +W ++I   + +G G ++L+LF  MKQ G++P++V
Sbjct: 591 LYGKCGSIEDAKMDFF-EMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDV 649

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TFV VL  C  VGLVEEG  +F SM  E+GI P  +HY C+VD+ GRAG+LD A   + +
Sbjct: 650 TFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEE 709

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP+   +  W  LL+AC+++KN E+GE A++ L+ELE  +  +YVLLSN YA +  W   
Sbjct: 710 MPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASR 769

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             +R+IMK +GV+K PG S IEV   VH FF GD  HP  ++I   L  ++ RL   GY 
Sbjct: 770 DQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYK 829

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
                + ++ E+E K+ T   HSEK+A+AFGL+SL   +P+R++KNLRVC DCH   K  
Sbjct: 830 QENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFT 889

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           S V  REI++RD  RFHHF  G CSC  YW
Sbjct: 890 SGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 2/252 (0%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           +LG L + Q    G      V   A+IS   +C    LA ++F +M   D + +N +++G
Sbjct: 160 QLGRLIHVQVYKQGFFSETFV-GNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISG 218

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           +AQCG    AL +F  MQ+  +  + V++ S+L+AC+ +G L +G+  H Y+ +  + + 
Sbjct: 219 HAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLD 278

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             +  +L+D+Y K G++ +A+  F      NV  W  ++          KS ++F  M  
Sbjct: 279 YIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLA 338

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           AGVRPN+ T+  +LR C   G +  G E   S+  + G +  +   G L+D+Y + G LD
Sbjct: 339 AGVRPNKFTYPCMLRTCTHTGEIGLG-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLD 397

Query: 244 EALDVINKMPMK 255
           +A  +++ +  K
Sbjct: 398 KAQRILDMIEEK 409



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 127/243 (52%), Gaps = 11/243 (4%)

Query: 18  IHEPDVVCQTA--------MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
           IH   ++C  +        +I   AK G V  AR++F+E+  RD ++W A+L+GYAQ G 
Sbjct: 64  IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123

Query: 70  SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
             EA+ L+  M    V      + S+LSACT       GR  HV + +        +G A
Sbjct: 124 GEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNA 183

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
           L+ +Y +C +   A   F  M   +  T+ ++I G A  G G+++L +F  M+ +G+ P+
Sbjct: 184 LISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPD 243

Query: 190 EVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
            VT  S+L  C  VG + +G++ H   ++    ++  +E  G L+DLY ++G ++EAL +
Sbjct: 244 SVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME--GSLLDLYVKSGDIEEALQI 301

Query: 249 INK 251
            + 
Sbjct: 302 FDS 304



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 130/253 (51%), Gaps = 4/253 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + D+     +I   +K G +D A+++ D + E+D ++W +M+AGY Q    +EAL  F  
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           MQ   +  + + + S +SAC  + A+ QG   H  +  +     V++   LV +Y++CG 
Sbjct: 437 MQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGI 496

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
             +A   F  ++ +   TW  +I G A +G  E++L++F  M QAG + N  TFVS +  
Sbjct: 497 SKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISA 556

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
              +  +++G++ H   ++  Y  E   E    L+ LYG+ G +++A     +M  K + 
Sbjct: 557 SANLADIKQGKQIHARVIKTGYTSET--EISNALISLYGKCGSIEDAKMDFFEM-TKRNE 613

Query: 259 GAWGALLNACRMY 271
            +W  ++  C  +
Sbjct: 614 VSWNTIITCCSQH 626



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D + + +++    K GD++ A ++FD     + + WN ML  Y Q     ++  +F+ M 
Sbjct: 278 DYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRML 337

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ N+ +   +L  CTH G +  G   H    +N  +  + +   L+DMYSK G ++
Sbjct: 338 AAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLD 397

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           KA      ++E++V +WTS+I G   +   +++LE F  M+  G+ P+ +   S +  C 
Sbjct: 398 KAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACA 457

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +  V +G +   +     G    +  +  LV LY R G   EA      +  K     W
Sbjct: 458 GIKAVHQGSQ-IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK-EGITW 515

Query: 262 GALLNACRMYKNTEMGELASRKLVELET--KNHGAYVLLSNIYAESKNWDRVINVRQI 317
             L++    +  + + E A +  ++++     +  +  +S+I A S N   +   +QI
Sbjct: 516 NGLISG---FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISA-SANLADIKQGKQI 569


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/440 (41%), Positives = 273/440 (62%), Gaps = 1/440 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DVV  T+++   AK G  D AR++F+ MP R+ ++W+A+++  AQ G + EAL LF +MQ
Sbjct: 238 DVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQ 297

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
           +  +  N   +V  L AC+ LG L  G+  H +I R  L++   +GTA++DMYSKCG+++
Sbjct: 298 VSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLS 356

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A   F  +  R++ +W  +I     +G G  +L LF  MK+  VRP+  TF S+L    
Sbjct: 357 SAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALS 416

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLVEEG+  F+ M  EYGIEP  +H  C+VDL  R+G ++EA  ++  +  KP     
Sbjct: 417 HSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISIL 476

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
            ALL+ C      E+GE  + K++EL+  + G   L+SN+YA +KNW +V  VR++MK  
Sbjct: 477 VALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDH 536

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
           G KK PGCS IE+   +H F   D++HP++ +I  M+ ++   ++  GY+  T  V +D+
Sbjct: 537 GSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDL 596

Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
           EE  KE  L +HSE++A AFGL++   G  + ++KNLRVC DCHD  K +SK+ +REI+V
Sbjct: 597 EEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREIVV 656

Query: 442 RDRNRFHHFKEGKCSCKGYW 461
           RD  RFHHFK+G CSC  YW
Sbjct: 657 RDAKRFHHFKDGACSCGDYW 676



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 135/247 (54%), Gaps = 3/247 (1%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+   +++++  AKCG +D A K+FD M +RD + W+ M+ G+   G+  +A+ ++  M+
Sbjct: 137 DIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMR 196

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              ++ +EV +V V+ AC   G    G   H Y+ R+ ++M V + T+LVDMY+K G  +
Sbjct: 197 RDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFD 256

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  M  RN  +W+++I  LA  G  +++L LF +M+ +G+ PN    V  L  C 
Sbjct: 257 QARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACS 316

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
            +GL++ G+     + R   ++  +     ++D+Y + G L  A  + +K+  +    +W
Sbjct: 317 DLGLLKLGKSIHGFILRTLELDRMVG--TAVIDMYSKCGSLSSAQMLFDKVVSRDLI-SW 373

Query: 262 GALLNAC 268
             ++  C
Sbjct: 374 NVMIACC 380



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 5/254 (1%)

Query: 24  VCQTAMISACAKCGDVDLARKMFDEMPERDPI--AWNAMLAGYAQCGKSREALHLFHLMQ 81
           +  + + +A A+ GD+  A       P       AWNA+LA +++     EAL +F  + 
Sbjct: 37  ILSSCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALP 96

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
               + +  +    LSAC  LG L  G               + + ++++++Y+KCG M+
Sbjct: 97  -PAARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMD 155

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F  M++R+  TW++++ G    G   +++E++  M++ G+  +EV  V V++ C 
Sbjct: 156 DAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACA 215

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             G    G      + R + ++  +     LVD+Y + G  D+A  V   MP +    +W
Sbjct: 216 ATGDARMGASVHGYLLR-HAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDV-SW 273

Query: 262 GALLNACRMYKNTE 275
            AL++    Y N +
Sbjct: 274 SALISQLAQYGNAD 287



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 58/91 (63%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D +  TA+I   +KCG +  A+ +FD++  RD I+WN M+A     G+ R+AL LF  
Sbjct: 336 ELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQE 395

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           M+ ++V+ +  +  S+LSA +H G +++G++
Sbjct: 396 MKRNEVRPDHATFASLLSALSHSGLVEEGKF 426


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 275/442 (62%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +V   TA++   AKCG V  A  +F+ MPER  + W++M+AGY Q     EAL LFH 
Sbjct: 180 DSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHR 239

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            Q   ++ N+ ++ S LSAC    AL +G+       +  +   + + ++L+DMY+KCG 
Sbjct: 240 AQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGI 299

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  ++E+NV  W +++ G + +    +++  F  M+Q G+ PN++T++SVL  
Sbjct: 300 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 359

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +GLVE+GR++FD M R + + P + HY C+VD+ GRAG L EA D I++MP    A 
Sbjct: 360 CSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 419

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WG+LL +CR+Y+N E+ E+A++ L E+E  N G +VLLSNIYA +  W+ V   R ++K
Sbjct: 420 MWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLK 479

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
               KK  G S IE+  +VH F  G+  HPR  EI + L ++   +K  GY A T   ++
Sbjct: 480 ESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLH 539

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EE  K++ L  HSEK+A+ FG++ L  G PIRI+KNLR+C DCH   K+ S +  REI
Sbjct: 540 DVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREI 599

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHFK G CSC  +W
Sbjct: 600 IVRDTNRFHHFKNGYCSCGEFW 621



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 2/246 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D +    +++  +KCG V+ ARK+FDEMP R  ++WN M+  + Q G   +AL LF  M
Sbjct: 80  ADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQM 139

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q      +E ++ SV+ AC     + + +  H +  +  L   V +GTAL+D+Y+KCG +
Sbjct: 140 QKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLV 199

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  M ER+  TW+S++ G   N   E++L LF   +  G+  N+ T  S L  C
Sbjct: 200 KDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSAC 259

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
                + EG++   ++  + GI   +     L+D+Y + G ++EA  V + +  K +   
Sbjct: 260 AARAALIEGKQ-VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEK-NVVL 317

Query: 261 WGALLN 266
           W A+L+
Sbjct: 318 WNAILS 323



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 2/159 (1%)

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           +G   H  I R  L+        L++MYSKCG +  A   F  M  R++ +W +++G   
Sbjct: 65  EGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHT 124

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG  EK+L LF  M++ G   +E T  SV+  C     V E ++       +  ++  +
Sbjct: 125 QNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ-LHGFALKTALDSNV 183

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                L+D+Y + G + +A  V   MP +     W +++
Sbjct: 184 FVGTALLDVYAKCGLVKDANLVFECMPERSDV-TWSSMV 221


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/450 (42%), Positives = 268/450 (59%), Gaps = 2/450 (0%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           VF    + DV     +I    KC  +  +  +F EM  ++ ++W +++A Y Q  +  +A
Sbjct: 235 VFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKA 294

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
             L+   +   V+ ++  + SVLSAC  +  L+ GR  H +  +  ++  + +G+ALVDM
Sbjct: 295 SVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDM 354

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVRPNEV 191
           Y KCG +  +   F  M E+N+ T  S+IGG A  G  + +L LF  M  +  G  PN +
Sbjct: 355 YGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYM 414

Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
           TFVS+L  C   G VE G + FDSM+  YGIEP  EHY C+VD+ GRAG +++A + I K
Sbjct: 415 TFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKK 474

Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
           MP+KP    WGAL NACRM+    +G LA+  L +L+ K+ G +VLLSN +A +  W   
Sbjct: 475 MPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEA 534

Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
             VR+ MK  G+KK  G S I V  +VH F A D +H    EI+ ML ++  +++ AGY 
Sbjct: 535 NTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYK 594

Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
            +    +YD+EEEEK   +  HSEK+A+AFGL++L   VPIRI KNLR+C DCH   K +
Sbjct: 595 PDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFV 654

Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           S    REIIVRD NRFH FK+G CSCK YW
Sbjct: 655 SGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 12/248 (4%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
           G    VF G    D+ C+T +          D ARK+FDE+PER+   WNA ++     G
Sbjct: 138 GRILDVFVGCSAFDMYCKTRL---------RDDARKLFDEIPERNLETWNAYISNSVTDG 188

Query: 69  KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
           + +EA+  F   +    + N ++    L+AC+    LD G   H  + R+     V++  
Sbjct: 189 RPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYN 248

Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
            L+D Y KC  +  +   F  M  +N  +W S++     N   EK+  L+   ++  V  
Sbjct: 249 GLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVET 308

Query: 189 NEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           ++    SVL  C  +  +E GR  H  +++    +E  +     LVD+YG+ G ++++  
Sbjct: 309 SDFMISSVLSACAGMAGLELGRSIHAHAVKA--CVERNIFVGSALVDMYGKCGCIEDSEQ 366

Query: 248 VINKMPMK 255
             ++MP K
Sbjct: 367 AFDEMPEK 374



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 2/247 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
           P       +I+  +K    + AR +    P R+ ++W ++++G AQ G    AL  F  M
Sbjct: 40  PPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEM 99

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           +   V  N+ +   V  A   L     G+  H    +    + V +G +  DMY K    
Sbjct: 100 RREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLR 159

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
           + A   F  + ERN+ TW + I     +G  ++++E F   ++ G +PN +TF   L  C
Sbjct: 160 DDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNAC 219

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
               L++ G +    + R  G +  +  Y  L+D YG+  ++  +  +  +M MK +A +
Sbjct: 220 SDGLLLDLGMQMHGLVFRS-GFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMK-NAVS 277

Query: 261 WGALLNA 267
           W +L+ A
Sbjct: 278 WCSLVAA 284



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 41/176 (23%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + GC+   ++ FD + E ++V   ++I   A  G VD+A  +F++M  R        
Sbjct: 354 MYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRG------- 406

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
                 CG +                 N ++ VS+LSAC+  GA++ G         + +
Sbjct: 407 ------CGPAP----------------NYMTFVSLLSACSRAGAVENGMKIF-----DSM 439

Query: 121 KMTVTLG------TALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNG 169
           K T  +       + +VDM  + G + +A +F   M  +  +  W ++     M+G
Sbjct: 440 KSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHG 495


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/441 (40%), Positives = 276/441 (62%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D +  T+++   +  G V++A K+FDEMP RD ++WN M+  ++  G   +AL ++  M 
Sbjct: 141 DAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMG 200

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V  +  ++V++LS+C H+ AL+ G   H      R +  V +  AL+DMY+KCG++ 
Sbjct: 201 NEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLE 260

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
            A+  F GM++R+V TW S+I G  ++G G +++  F  M  +GVRPN +TF+ +L GC 
Sbjct: 261 NAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCS 320

Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
             GLV+EG EHF+ M  ++ + P ++HYGC+VDLYGRAG+L+ +L++I           W
Sbjct: 321 HQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLW 380

Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
             LL +C++++N E+GE+A +KLV+LE  N G YVL+++IY+ + +     ++R+++++ 
Sbjct: 381 RTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSH 440

Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVA-NTNPVMYD 380
            ++ +PG S IE+  +VH+F   D+ HP    I   LGE+  R  LAGY   ++N     
Sbjct: 441 DLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPT 500

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           + +         HSEK+AIA+GL+    G  +RI KNLRVC DCH  TK +SK FNREII
Sbjct: 501 LSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREII 560

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           VRDR RFHHF +G CSC  YW
Sbjct: 561 VRDRVRFHHFADGICSCNDYW 581



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E  V    A+I   AKCG ++ A  +F+ M +RD + WN+M+ GY   G   EA+  F  
Sbjct: 240 ESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRK 299

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSKC 137
           M    V+ N ++ + +L  C+H G + +G   H  I  ++  +T  +     +VD+Y + 
Sbjct: 300 MVASGVRPNAITFLGLLLGCSHQGLVKEG-VEHFEIMSSQFHLTPNVKHYGCMVDLYGRA 358

Query: 138 GNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
           G +  +++  +      +   W +++G 
Sbjct: 359 GQLENSLEMIYASSCHEDPVLWRTLLGS 386


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/443 (41%), Positives = 277/443 (62%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           ++ ++   +A++    KC +V  A  +F +M  ++ I+W AML GY Q G S EA+ +F 
Sbjct: 301 YQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFC 360

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            MQ +++  ++ ++ SV+S+C +L +L++G   H     + L   VT+  AL+ +Y KCG
Sbjct: 361 DMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCG 420

Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
           ++  A   F  MK R+  +WT+++ G A  G   +++ LF  M   G+ P+ VTFV VL 
Sbjct: 421 SLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLS 480

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
            C   GLVE+G  +F+ M +E+ I P  +HY C++DL  RAGRL+EA + IN+MP  P A
Sbjct: 481 ACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDA 540

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
             W  LL++CR+  N E+G+ A+  L +LE +N  +Y+LLS+IYA    WD V  +R+ M
Sbjct: 541 IGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGM 600

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           +  GVKK PG S I+   +VH F A D + P  ++I   L  +  ++   GYV + + V+
Sbjct: 601 REMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVL 660

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+E+ EK   L  HSEK+AIAFGL+ + +G+ IR+VKNLRVC DCH+ TK IS++  RE
Sbjct: 661 HDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQRE 720

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD  RFH FK+G CSC  +W
Sbjct: 721 ILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 148/267 (55%), Gaps = 2/267 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G +    ++F+ I E ++V    MI+   +C  +  A ++FD MPE+D I+W  +
Sbjct: 182 MYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTI 241

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           + G  Q G  +EA+  F  M I    +++ +  SVL+AC    ALD+G+  H YI R   
Sbjct: 242 ITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDY 301

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
           +  + +G+AL+DMY KC N+  A   F  M+ +NV +WT+++ G   NG  E+++ +F  
Sbjct: 302 QDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCD 361

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M++  + P++ T  SV+  C  +  +EEG + F       G+  ++     L+ LYG+ G
Sbjct: 362 MQRNEIHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCG 420

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNA 267
            L+ A  + ++M ++    +W AL++ 
Sbjct: 421 SLEHAHQLFHEMKIRDEV-SWTALVSG 446



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 148/297 (49%), Gaps = 36/297 (12%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           Y +LG L   + VFD I +P++     ++SA +K G +   +++FD MP  D ++WN++L
Sbjct: 50  YGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLL 109

Query: 62  AGYAQCGKSREALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           +GYA  G   E++ ++++M +   V LN ++  ++L   ++ G +D GR  H  I +   
Sbjct: 110 SGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGY 169

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV------------------------- 155
           +  + +G+ LVDMY+K G +N A   F  + E+N+                         
Sbjct: 170 QSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDN 229

Query: 156 ------YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
                  +WT++I GL  NG  +++++ F  M   G   ++ TF SVL  C     ++EG
Sbjct: 230 MPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEG 289

Query: 210 RE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++ H   +R +Y    ++     L+D+Y +   +  A  V  KM  K +  +W A+L
Sbjct: 290 KQIHAYIIRTDYQDNIFVG--SALLDMYCKCRNVKYAEAVFRKMRHK-NVISWTAML 343


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/441 (44%), Positives = 271/441 (61%), Gaps = 1/441 (0%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV     +I   AKCG VD A  +FD    RD + WN+M+A   Q G+  EAL L   M 
Sbjct: 200 DVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMA 259

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              +    V++VS +SA    GAL +GR  H Y  R        L T+L+DMY+K G + 
Sbjct: 260 AEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVT 319

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGC 200
            A   F  +  R + +W ++I G  M+G  + + ELF  M+ +A V P+ +TFV VL  C
Sbjct: 320 VARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSAC 379

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
              G+V+E +E FD M   Y I+P ++HY CLVD+ G +GR  EA DVI  M +KP +G 
Sbjct: 380 NHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGI 439

Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
           WGALLN C+++KN E+ ELA  KL+ELE ++ G YVLLSNIYA+S  W+    VR++M  
Sbjct: 440 WGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTN 499

Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
           +G+KK+  CS IE+  + H F  GD +HPR +EI   L  +   +   GYV +T  V ++
Sbjct: 500 RGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHN 559

Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
           +E++EK + +  HSE++AIAFGLIS   G  + + KNLRVC DCH V K+IS++  REII
Sbjct: 560 VEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREII 619

Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
           +RD NR+HHF  G+CSCK +W
Sbjct: 620 IRDVNRYHHFVNGECSCKDHW 640



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPI-AWNAMLAGYAQCGKSREALHLFH-L 79
           D V  T ++   A CG V +AR++FDEMP +  +  WN ++  YA+ G    A+ L+  +
Sbjct: 97  DAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREM 156

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           +    ++ +  +   VL AC  L  L  GR  H  + R      V +   L+DMY+KCG 
Sbjct: 157 LACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGC 216

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           +++A   F     R+   W S+I     NG   ++L L   M   G+ P  VT VS +  
Sbjct: 217 VDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISA 276

Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
               G +  GRE H    RR +G +  L+    L+D+Y ++G
Sbjct: 277 AADAGALPRGRELHGYGWRRGFGSQDKLK--TSLLDMYAKSG 316



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 6/184 (3%)

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           N  +  ++L +C    A+  GR  H  +  + L +   L T LVD+Y+ CG ++ A   F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 148 WGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGL 205
             M  + NV+ W  +I   A +G  E ++EL+  M   G + P+  T+  VL+ C  +  
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD 181

Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
           +  GRE H   MR  +  + ++     L+D+Y + G +DEA  V +   ++  A  W ++
Sbjct: 182 LGAGREVHDRVMRTSWAADVFV--CAGLIDMYAKCGCVDEAWAVFDSTTVR-DAVVWNSM 238

Query: 265 LNAC 268
           + AC
Sbjct: 239 IAAC 242


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 184/443 (41%), Positives = 275/443 (62%), Gaps = 1/443 (0%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E D     +++S    CG++  A  +FD M ++  ++WN M+ GY Q G    AL LF  
Sbjct: 526 ERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQ 585

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M ++ V+  E+SM+SV  AC+ L +L  GR AH Y  +  L+    +  +++DMY+K G+
Sbjct: 586 MVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGS 645

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + ++   F G+KER+V +W +++ G  ++G  +++++LF  M++ G  P+E+TF+ VL  
Sbjct: 646 VMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTA 705

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV-INKMPMKPHA 258
           C   GLV EG  + D M+  +G+ P L+HY C++D+  RAG+LDEAL +   +M  +P  
Sbjct: 706 CNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGV 765

Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
           G W  LL++CR++KN EMGE  + KL   E +    YVLLSN+YA S  WD V  VRQ M
Sbjct: 766 GIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRM 825

Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
           K   ++K  GCS IE++ +V  F AG+ +   + EI+ +   + R +   GY  +T+ V 
Sbjct: 826 KEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQ 885

Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
           +D+ EEEK + L  HSEK+AI +GLI   EG  +R+ KNLR+C DCH+  K+ISKV  RE
Sbjct: 886 HDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMERE 945

Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
           I+VRD  RFHHFK G CSC  YW
Sbjct: 946 IVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 138/266 (51%), Gaps = 14/266 (5%)

Query: 4   ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
           EL C    Q+    +H  ++V   A +++ AKCG +  A ++F  +  +   +WNA++ G
Sbjct: 413 ELHCYSLKQEF---VHNNELVAN-AFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGG 468

Query: 64  YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
           Y+Q    R +L  +  M+   +  +  ++ S+LSAC+ + +L  G+  H  I RNRL+  
Sbjct: 469 YSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERD 528

Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
             +  +L+ +Y  CG ++ A   F  M+++ + +W +++ G   NG  E++L LF  M  
Sbjct: 529 SFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVL 588

Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG----CLVDLYGRA 239
            GV+P E++ +SV   C ++  +  GRE        Y ++  LE        ++D+Y + 
Sbjct: 589 YGVQPCEISMMSVFGACSLLPSLRLGRE-----AHGYALKCLLEDNAFIACSVIDMYAKN 643

Query: 240 GRLDEALDVINKMPMKPHAGAWGALL 265
           G + E+  V N +  +  A +W A++
Sbjct: 644 GSVMESFKVFNGLKERSVA-SWNAMV 668



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV    A++S     G V  A ++F  MPER+ ++WN+M+  ++  G S E   L   M 
Sbjct: 218 DVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMM 277

Query: 82  IHDVKL----NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             D ++    +  ++ +VL  C     +  G+  H    +  L   V +  AL+DMYSKC
Sbjct: 278 EKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKC 337

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG--VRPNEVTFVS 195
           G +N A   F     +NV +W +++GG +  G   K+ +L   M   G  +R +EVT ++
Sbjct: 338 GCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILN 397

Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
            +  C    ++   +E H  S+++E+     L      V  Y + G L  A  V   +  
Sbjct: 398 AVPVCFEESVLPNLKELHCYSLKQEFVHNNELVA-NAFVASYAKCGSLSYAHRVFCSIRS 456

Query: 255 KPHAGAWGALL 265
           K    +W AL+
Sbjct: 457 KT-VNSWNALI 466



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 123/252 (48%), Gaps = 7/252 (2%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +VV   A++   +KCG ++ A+ +F     ++ ++WN M+ G++  G   +   L   
Sbjct: 321 DKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQ 380

Query: 80  MQI--HDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSK 136
           M     D++ +EV++++ +  C     L   +  H Y +++  +     +  A V  Y+K
Sbjct: 381 MLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAK 440

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           CG+++ A   F  ++ + V +W ++IGG + +     SL+ +  MK +G+ P+  T  S+
Sbjct: 441 CGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSL 500

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L  C  +  ++ G+E H   +R     + ++  Y  L+ LY   G L  A  + + M  K
Sbjct: 501 LSACSQIKSLKLGKEVHGLIIRNRLERDSFV--YISLLSLYIHCGELSTAHVLFDAMEDK 558

Query: 256 PHAGAWGALLNA 267
               +W  ++N 
Sbjct: 559 TLV-SWNTMVNG 569



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 10/250 (4%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           DV+C T +I+  + CG  D +R +FD + +++   WNA+++ Y++       L +F  M 
Sbjct: 117 DVLC-TRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMI 175

Query: 82  IHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                L +  +   V+ AC  +  +  G   H  + + RL   V +  ALV  Y   G++
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSV 235

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM----KQAGVRPNEVTFVSV 196
           + A+  F  M ERN+ +W S+I   + NG  E+   L   M     +    P+  T  +V
Sbjct: 236 SDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATV 295

Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L  C     +  G+  H  +M+     E  + +   L+D+Y + G +++A  VI K+   
Sbjct: 296 LPVCARDREIGVGKGVHGLAMKLSLDKEVVVNN--ALMDMYSKCGCINDA-QVIFKLNNN 352

Query: 256 PHAGAWGALL 265
            +  +W  ++
Sbjct: 353 KNVVSWNTMV 362



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 108 GRWAHVYI-ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           GR  H  + E  RL     L T ++ MYS CG+ + +   F  ++++N++ W +VI   +
Sbjct: 100 GRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYS 159

Query: 167 MNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225
            N      LE+F  ++ ++G+ P+  TF  V++ C  V  V+ G      + +   +E  
Sbjct: 160 RNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDV 219

Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
                 LV  YG  G + +AL V   MP + +  +W +++   R++ +  + E
Sbjct: 220 FVS-NALVSFYGTNGSVSDALRVFKIMPER-NLVSWNSMI---RVFSDNGLSE 267


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/455 (40%), Positives = 278/455 (61%), Gaps = 15/455 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYAQCGKSREALHLF 77
           DVV  T+++ ACA+ G +D  + + D +     E +    NA++  Y +CG    A  +F
Sbjct: 351 DVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVF 410

Query: 78  HLMQIHDV----------KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
             M + D+          K +  +M  +L AC  L AL++G+  H YI RN       + 
Sbjct: 411 STMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            ALVD+Y KCG +  A   F  +  +++ +WT +I G  M+G G +++  F+ M+ AG+ 
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+EV+F+S+L  C   GL+E+G   F  M+ ++ IEP LEHY C+VDL  R G L +A +
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
            I  +P+ P A  WGALL  CR+Y + E+ E  + ++ ELE +N G YVLL+NIYAE++ 
Sbjct: 591 FIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEK 650

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG-DETHPRYNEIEVMLGEISRRLK 366
           W+ V  +R+ +  KG++K PGCS IE+  +V+ F +G + +HP   +IE +L ++ R++K
Sbjct: 651 WEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMK 710

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
             GY   T   + + +E +KE  LC HSEK+A+AFGL++L     +R+ KNLRVC DCH+
Sbjct: 711 EEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHE 770

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           + K +SK   REI++RD NRFHHFK G CSC+G+W
Sbjct: 771 MAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 34/311 (10%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDV--------------------D 40
           +YA  G L   ++VFD + + +V     M+S  AK GD                     +
Sbjct: 143 LYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPE 202

Query: 41  LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100
            A ++FD++ +RD I+WN+M++GY   G +   L ++  M    + ++  +++SVL  C 
Sbjct: 203 SASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           + G L  G+  H    ++  +  +     L+DMYSKCG+++ A+  F  M ERNV +WTS
Sbjct: 263 NSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           +I G   +G  + ++ L   M++ GV+ + V   S+L  C   G ++ G++  D ++   
Sbjct: 323 MIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN- 381

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-------------PMKPHAGAWGALLNA 267
            +E  L     L+D+Y + G +D A  V + M              +KP +     +L A
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPA 441

Query: 268 CRMYKNTEMGE 278
           C      E G+
Sbjct: 442 CASLSALERGK 452



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 54/253 (21%)

Query: 51  ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
           +R    +NA +  + Q G    A+ L  + Q  +++    S  SVL  C    +L  G+ 
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYS--SVLQLCAGSKSLTDGKK 120

Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY-------------- 156
            H  I+ N + +   LG  LV +Y+ CG++ +    F  M+++NVY              
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 157 -------------------------------------TWTSVIGGLAMNGAGEKSLELFS 179
                                                +W S+I G   NG  E+ LE++ 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
            M   G+  +  T +SVL GC   G +  G+    S+  +   E  +     L+D+Y + 
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSTFERRINFSNTLLDMYSKC 299

Query: 240 GRLDEALDVINKM 252
           G LD AL V  KM
Sbjct: 300 GDLDGALRVFEKM 312


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/441 (42%), Positives = 273/441 (61%), Gaps = 5/441 (1%)

Query: 23  VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
           V+   ++I   +KC  +D A ++F  +P ++ I+W +++ G     +S EAL  F  M I
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-I 490

Query: 83  HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
             +K N V++VSVLSAC  +GAL  G+  H +  R  L     L  AL+DMY +CG M  
Sbjct: 491 LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEP 550

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A + F    E++V +W  ++ G A  G G  ++ELF  M ++ V P+E+TF S+L  C  
Sbjct: 551 AWNQF-NSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSR 609

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
            G+V +G E+F+SM  ++ I P L+HY  +VDL GRAGRL++A + I KMP+ P    WG
Sbjct: 610 SGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWG 669

Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
           ALLNACR+Y+N E+GELA++ + E++TK+ G Y+LL N+YA+S  WD V  VR+IM+   
Sbjct: 670 ALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENR 729

Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
           +   PGCS +EV  +VH F  GD+ HP+  EI  +L     +++  G   + +    DI 
Sbjct: 730 LTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDI- 788

Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
           +  K +  C HSE++AIAFGLI+   G PI + KNL +C +CH+  K ISKV  R I VR
Sbjct: 789 DASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVR 848

Query: 443 DRNRFHHFKEGKCSC--KGYW 461
           D  +FHHFK+G CSC  +GYW
Sbjct: 849 DTEQFHHFKDGVCSCGDEGYW 869



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 150/257 (58%), Gaps = 3/257 (1%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           E DV    A+I+   KCGD+  AR +FD MP RD I+WNAM++GY +     E L LF +
Sbjct: 227 ESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFM 286

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
           M+   V  + ++M SV+SAC  LG    GR  H Y+ +      V++  +L+ M+S  G 
Sbjct: 287 MREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGC 346

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            ++A   F  M+ +++ +WT++I G   NG  EK++E +++M+  GV P+E+T  SVL  
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +GL+++G    +   R  G+  ++     L+D+Y +   +D+AL+V +++P K +  
Sbjct: 407 CAGLGLLDKGIMLHEFADRT-GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK-NVI 464

Query: 260 AWGALLNACRM-YKNTE 275
           +W +++   R+ Y++ E
Sbjct: 465 SWTSIILGLRLNYRSFE 481



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 146/284 (51%), Gaps = 41/284 (14%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKM---------------------------------- 45
           +PD++  T++ISAC   GD  L R++                                  
Sbjct: 293 DPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 46  -FDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
            F +M  +D ++W AM++GY + G   +A+  + +M+   V  +E+++ SVLSAC  LG 
Sbjct: 353 VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGL 412

Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
           LD+G   H + +R  L   V +  +L+DMYSKC  ++KA++ F  +  +NV +WTS+I G
Sbjct: 413 LDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG 472

Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIE 223
           L +N    ++L  F  M  + ++PN VT VSVL  C  +G +  G+E H  ++R   G +
Sbjct: 473 LRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFD 531

Query: 224 PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            +L +   L+D+Y R GR++ A +  N    +    +W  LL  
Sbjct: 532 GFLPN--ALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTG 571



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 4/241 (1%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
           A++S   + GD+  A  +F +M ERD  +WN ++ GYA+ G   EAL+L+H M    ++ 
Sbjct: 134 ALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
           +  +   VL  C  L  L +GR  H+++ R   +  V +  AL+ MY KCG++  A   F
Sbjct: 194 DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF 253

Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
             M  R+  +W ++I G   N    + L LF +M++  V P+ +T  SV+  C  +G   
Sbjct: 254 DRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDER 313

Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
            GRE H   ++  +  E  + +   L+ ++   G  DEA  V +KM  K    +W A+++
Sbjct: 314 LGREVHGYVIKTGFVAEVSVNN--SLIQMHSSVGCWDEAEMVFSKMEFKDLV-SWTAMIS 370

Query: 267 A 267
            
Sbjct: 371 G 371



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 6/195 (3%)

Query: 76  LFHL--MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
           L HL  MQ   V + E + +++L  C    A  +G   H Y+ +   ++ V LG AL+ M
Sbjct: 79  LIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSM 138

Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
           + + G++ +A   F  M ER++++W  ++GG A  G  +++L L+  M   G+RP+  TF
Sbjct: 139 FVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198

Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             VLR C  +  +  GRE H   +R  YG E  ++    L+ +Y + G +  A  V ++M
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIR--YGFESDVDVVNALITMYVKCGDIFSARLVFDRM 256

Query: 253 PMKPHAGAWGALLNA 267
           P +    +W A+++ 
Sbjct: 257 PRRDRI-SWNAMISG 270


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/457 (41%), Positives = 272/457 (59%), Gaps = 7/457 (1%)

Query: 2   YAELGCLGYCQKVFDGI-----HEPDVVCQTAMISAC--AKCGDVDLARKMFDEMPERDP 54
           +A  G  G    VF  +      +PD     +++ +   A+  D+ L + +FDEM  +  
Sbjct: 198 FAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGL 257

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           I+WNAMLA Y       EA+ LF  MQ   ++ + V++ +VL +C  + AL  G+  H  
Sbjct: 258 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 317

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           I+R R+  ++ L  AL+DMY+ CG + +A D F  M  R+V +WTS+I     +G G ++
Sbjct: 318 IKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREA 377

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           ++LF  M   G+ P+ + FV++L  C   GL++ G+ +F SM  E+ I P LEHY C+VD
Sbjct: 378 IDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVD 437

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           L GRAG + EA D I  MP+KP+   WGALL ACR++ N ++G LA+  L+ L  K  G 
Sbjct: 438 LLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGY 497

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEI 354
           YVLLSNIYA +  W  V  VR +M++KG+KKLPG S  E+   VH F  GD +HP+   I
Sbjct: 498 YVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMI 557

Query: 355 EVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
              L E+ RR++  GY       ++D+EEE+KE  L  HSEK+AIAF LI+   G PIRI
Sbjct: 558 YKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRI 617

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451
             NLR C DCH   K+IS +  REII++D NR H+ K
Sbjct: 618 TMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 13/232 (5%)

Query: 45  MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM--QIHDVKLNEVSMVSVLSACTHL 102
           + D  P+R  + +N +L G       R+AL LF  M  Q H    +  +    L +C   
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
             L  GR  H    R  L   V +  + + MY++CG  + A   F  M+ R+V +W ++I
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 163 GGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLR--GCCVVGLVEEGREHFDSMRRE 219
            G A  G   +++++F  L+     +P+  T  S+L   G   V  +   +  FD MR +
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNAC 268
            G+  W      ++ +Y       EA+++  +M    ++P A     +L +C
Sbjct: 256 -GLISW----NAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSC 302


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/436 (44%), Positives = 285/436 (65%), Gaps = 8/436 (1%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDV 85
             ++ A AK G++ +A K+FD M E D   WN+++A YAQ G S EA  +F  +++  + 
Sbjct: 127 NTLMDAYAKFGEMGVA-KVFDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNF 185

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
           + N V M   LS     GAL  G+  H  + +  L+ +V +GT++VD+Y KC  +  A  
Sbjct: 186 RYNAVIMDXGLS-----GALQLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARK 240

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
            F  MK +NV +WT+++ G  M+G  ++++E+F  M ++GV+PN +TFVSVL  C   G+
Sbjct: 241 AFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGM 300

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
           ++EG   F+ M+ E+ +EP +EHY C+VDL GRAG L     +I +M  KP    WG+LL
Sbjct: 301 LKEGXHWFNRMKCEFIVEPGIEHYLCMVDLLGRAGYL-XCYGLIKEMNAKPDFIIWGSLL 359

Query: 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
            ACR++KN E+GE+++RKL EL+  N G YVLLSNIYA++  WD V  +R +MK++G+ K
Sbjct: 360 GACRIHKNVELGEISARKLFELDXSNCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLK 419

Query: 326 LPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEE 385
            PG S++E+   +H    GD+ HP++ +I   L + + +L+  GY+ N N V++D++EEE
Sbjct: 420 APGFSIVELKGRIHVLLVGDKEHPQHEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEE 479

Query: 386 KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRN 445
           K   L  HSEK+A+AFG+++   G  I I+KNLR+C DC+ V K+I KV NREI+VRD  
Sbjct: 480 KGMVLRVHSEKLAVAFGIMNSVPGSIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSK 539

Query: 446 RFHHFKEGKCSCKGYW 461
           RFHHFKEG CSC  YW
Sbjct: 540 RFHHFKEGSCSCGDYW 555



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 49/270 (18%)

Query: 42  ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD---------VKLNEVSM 92
           +R +FDE+P+R  ++W +++AG  Q  ++R+A+ +F  + + +         V ++ V +
Sbjct: 32  SRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLL 91

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
             V+SA + LG        H  + +   +  V +G  L+D Y+K G M  A   F GM E
Sbjct: 92  GCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KVFDGMNE 150

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTF------------------ 193
            + Y W SVI   A NG   ++  +F  M ++G  R N V                    
Sbjct: 151 SDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIHHQV 210

Query: 194 ------VSVLRGCCVVGL------VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
                  SV  G  +V +      VE  R+ FD M+ +  ++ W      +V  YG  GR
Sbjct: 211 IKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVK-NVKSWT----AMVAGYGMHGR 265

Query: 242 LDEALDVINKM---PMKPHAGAWGALLNAC 268
             EA+++  KM    +KP+   + ++L AC
Sbjct: 266 AKEAMEIFYKMIRSGVKPNYITFVSVLAAC 295


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/460 (40%), Positives = 283/460 (61%), Gaps = 8/460 (1%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+ G       VF  +   + +  TAMI+A ++ GD+  AR  FD MPER+ + WN+M
Sbjct: 423 MYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSM 482

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           L+ Y Q G S E L L+  M+ + V+ + ++  + + AC  L  +  G     +  +  L
Sbjct: 483 LSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGL 542

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + V++  ++V MYS+CG + +A + F  + ++++ +W +++   A NG G K ++ F  
Sbjct: 543 SLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFED 602

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M +   +PN +++VSVL GC  +GLV EG+ +FDSM R +GI P  EH+ C+VDL GRAG
Sbjct: 603 MLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAG 662

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
            L++A D+I  MP KP+A  W ALL +CR++ +  + E A++KL+EL+ +    YVLLSN
Sbjct: 663 LLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSN 722

Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
           +Y+ES   D V ++R++MK KG++   GCS IEVD  VH F   + +HP+  E+ + L E
Sbjct: 723 MYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEE 782

Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
           + + ++  G         Y   E     +   HSEK+A AFGL++L   +PI ++KNLRV
Sbjct: 783 MMKMIEDTG--------KYITVESSVHRSKKYHSEKLAFAFGLLNLPSWMPIHVMKNLRV 834

Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGY 460
           C DCH V K++S V +RE+I+RD  RFHHFK+G CSCK Y
Sbjct: 835 CDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 33/280 (11%)

Query: 19  HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
           H  D+V    +I   AKCG +DLA+++F  + E D I+WN+++ G    G   +AL LF+
Sbjct: 309 HSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFN 368

Query: 79  LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
            M+   V L+E  + ++L  C+       G   H Y  ++ +  +  +G A++ MY+KCG
Sbjct: 369 QMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCG 428

Query: 139 NMN-------------------------------KAMDFFWGMKERNVYTWTSVIGGLAM 167
           + +                               KA  +F  M ERN+ TW S++     
Sbjct: 429 DTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQ 488

Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227
           NG  E+ L+L+  M+  GV+P+ +TF + +R C  + +V+ G +   +   ++G+   + 
Sbjct: 489 NGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQ-VVTHATKFGLSLNVS 547

Query: 228 HYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
               +V +Y R G + EA +  + +  K    +W A+L A
Sbjct: 548 VANSIVTMYSRCGLIKEAKNTFDSIDDKDLI-SWNAMLAA 586



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 2/267 (0%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MY + G +   + VF  I  P + C  +MI   ++      A ++F+ MPERD ++WN +
Sbjct: 190 MYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTL 249

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
           ++ ++Q G   + L +F  M       N ++  SVLSAC     L  G   H  I R   
Sbjct: 250 ISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEH 309

Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
            + +  G  L+DMY+KCG ++ A   F  ++E +  +W S+I G+   G GE +L LF+ 
Sbjct: 310 SLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQ 369

Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
           M+++ V  +E    ++L  C        G E       + G+         ++ +Y + G
Sbjct: 370 MRRSSVVLDEFILPTILGVCSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCG 428

Query: 241 RLDEALDVINKMPMKPHAGAWGALLNA 267
             D+A  V   MP++ +  +W A++ A
Sbjct: 429 DTDKADLVFRLMPLR-NTISWTAMITA 454



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 127/306 (41%), Gaps = 43/306 (14%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWN 58
           MY+  G      +VF   H  ++     MI A      +  A K+FDEMP R  D ++W 
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWT 111

Query: 59  AMLAGYAQCGKSREALHLFHLMQIHDVK-----LNEVSMVSVLSACTHLGALDQGRWAHV 113
            M++GY+Q G    +   F LM I D        +  S  SV+ AC  LG        H 
Sbjct: 112 TMISGYSQNGFHSRSFETFSLM-IRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHA 170

Query: 114 YIERNRLKMTVTLGTALVDMYSKCGNMN-------------------------------K 142
            + +    M   +  ++V MY KCG+++                               K
Sbjct: 171 LVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYK 230

Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           A+  F  M ER+  +W ++I   + +G G + L +F  M   G  PN +T+ SVL  C  
Sbjct: 231 ALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACAS 290

Query: 203 VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
              ++ G   H   +R E+ ++  L     L+D+Y + G LD A  V   +    H  +W
Sbjct: 291 TSDLKWGAHLHARILRMEHSLD--LVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHI-SW 347

Query: 262 GALLNA 267
            +L+  
Sbjct: 348 NSLITG 353


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 182/442 (41%), Positives = 268/442 (60%), Gaps = 3/442 (0%)

Query: 20   EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
            E D+  + A+++  + CGD   A   F+ M  RD ++WN M A YAQ G ++EA+ LF  
Sbjct: 670  EADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQ 729

Query: 80   MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            MQ+  VK ++++  + L+       +  G+  H     + L   V++ T LV +Y+KCG 
Sbjct: 730  MQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGK 789

Query: 140  MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
            +++AM  F G  +  V    ++IG LA +G  E+++++F  M+Q GVRP+  T VS++  
Sbjct: 790  LDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISA 849

Query: 200  CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
            C   G+VEEG   F +M+  +GI P LEHY C VDL GRAG+L+ A  +I KMP + +  
Sbjct: 850  CGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTL 909

Query: 260  AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
             W +LL  C++  + E+GE  +++++EL+  N  A+V+LSNIY  +  W      R+ M 
Sbjct: 910  VWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKML 969

Query: 320  AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
             + VK  PG S  E+ ++VHEF AGD +HP+ +EI V+L ++   ++ AGY A+      
Sbjct: 970  DENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGYEADKG---L 1026

Query: 380  DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
            D+E+E KE  L  HSE++AIAFGLI+      ++IVKNLRVC DCH  TK IS V  REI
Sbjct: 1027 DVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYISMVMGREI 1086

Query: 440  IVRDRNRFHHFKEGKCSCKGYW 461
            IVRD  RFHHF  G CSCK  W
Sbjct: 1087 IVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 26  QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
           +TA+IS   +C +++ AR +F+EM   D ++W AM++  A+    +E  +LF  MQ+  V
Sbjct: 575 ETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGV 634

Query: 86  KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
             ++ ++ + L  C     L  G+  H  +    L+  + +  AL++MYS CG+  +A+ 
Sbjct: 635 IPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALS 694

Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
           FF  MK R++ +W  +    A  G  ++++ LF  M+  GV+P+++TF + L       L
Sbjct: 695 FFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSAL 754

Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
           V +G+  F ++  E G++  +     LV LY + G+LDEA+ + 
Sbjct: 755 VSDGK-LFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLF 797



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 12/247 (4%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH-DVKL 87
           +I+   +CG ++ A  +F +M ER+ ++W A+++  AQCG    A  LF  M +      
Sbjct: 66  LINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAP 125

Query: 88  NEVSMVSVLSACTHLGALDQGRWAHVYIER---NRLKMTVTL-GTALVDMYSKCGNMNKA 143
           N  ++V++L+AC +   L  GR  H  I      R   T TL G A+++MY+KCG++  A
Sbjct: 126 NSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDA 185

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAG-EKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
           +  F  + E++V +WT++ G  A        +L +F  M    + PN +TF++ L  C  
Sbjct: 186 IAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC-- 243

Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG--A 260
             L +    H        G +P   +   L+++YG+ G  + A  V   M  +      +
Sbjct: 244 TSLRDGTWLHSLLHEASLGFDPLASN--ALINMYGKCGDWEGAYSVFKAMASRQELDLVS 301

Query: 261 WGALLNA 267
           W A+++A
Sbjct: 302 WNAMISA 308



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 9   GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQC 67
           G+  ++++  +  DVV   A+IS  AKCG    A  +F  +  + D I+WN ML      
Sbjct: 356 GFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDR 415

Query: 68  GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTL 126
               + ++ FH M +  +  N+VS +++L+AC++  ALD GR  H  I  R R  +  ++
Sbjct: 416 KSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSV 475

Query: 127 GTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
            T LV MY KCG++++A   F  M    R++ TW  ++G  A N   +++      M Q 
Sbjct: 476 ATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQG 535

Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
           GV P+ ++F SVL  C      +  R    +S  R   +E        L+ ++GR   L+
Sbjct: 536 GVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLET------ALISMHGRCRELE 589

Query: 244 EALDVINKMPMKPHAGAWGALLNA 267
           +A  V N+M       +W A+++A
Sbjct: 590 QARSVFNEMD-HGDVVSWTAMVSA 612



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 7/244 (2%)

Query: 28  AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDVK 86
           AMI+  AKCG ++ A  +F  +PE+D ++W AM   YAQ  +   +AL +F  M +  + 
Sbjct: 171 AMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLA 230

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
            N ++ ++ L ACT   +L  G W H  +    L        AL++MY KCG+   A   
Sbjct: 231 PNVITFITALGACT---SLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSV 287

Query: 147 FWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
           F  M  R   ++ +W ++I      G    ++ +F  ++  G+RPN VT +++L      
Sbjct: 288 FKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAAS 347

Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
           G+       F     E G    +     ++ +Y + G    A  V  ++  K    +W  
Sbjct: 348 GVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNT 407

Query: 264 LLNA 267
           +L A
Sbjct: 408 MLGA 411



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 27  TAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84
           T ++S   KCG +  A  +F EMP   R  + WN ML  YAQ  +S+EA      M    
Sbjct: 477 TMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGG 536

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT--------LGTALVDMYSK 136
           V  + +S  SVLS+C            +   E   L+M +         L TAL+ M+ +
Sbjct: 537 VLPDALSFTSVLSSC------------YCSQEAQVLRMCILESGYRSACLETALISMHGR 584

Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
           C  + +A   F  M   +V +WT+++   A N   ++   LF  M+  GV P++ T  + 
Sbjct: 585 CRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATT 644

Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
           L  C     +  G+    +   E G+E  +     L+++Y   G   EAL     M  +
Sbjct: 645 LDTCLASTTLGLGKV-IHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKAR 702



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 7/180 (3%)

Query: 93  VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152
            ++L +C     L +G+ AH  I    L+  + LG  L++MY +CG++ +A   F  M+E
Sbjct: 29  TALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 153 RNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
           RNV +WT++I   A  GA  ++  LF +++ ++   PN  T V++L  C     +  GR 
Sbjct: 89  RNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 212 HFDSMRREYGIEPWLEHY----GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
              +M  E G+E            ++++Y + G L++A+ V   +P K    +W A+  A
Sbjct: 149 -IHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVV-SWTAMAGA 206


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 182/455 (40%), Positives = 267/455 (58%), Gaps = 36/455 (7%)

Query: 43  RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102
           RK+F+ MP+RD ++WN +++G AQ G   +AL +   M   D++ +  ++ SVL      
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162
             L +G+  H Y  RN     V +G++L+DMY+KC  ++ +   F+ + + +  +W S+I
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 163 GGLAMNGAGEKSLELFSLM------------------------------------KQAGV 186
            G   NG  ++ L+ F  M                                    +  GV
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGV 369

Query: 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
           +PN V F++VL  C   GLV+E  ++F+SM ++Y I P LEHY  + DL GR GRL+EA 
Sbjct: 370 KPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAY 429

Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306
           + I+ M ++P    W  LL ACR++KN E+ E  S+KL  ++ +N GAYVLLSNIY+ + 
Sbjct: 430 EFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAG 489

Query: 307 NWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366
            W     +R  M+ KG+KK P CS IE+  +VH F AGD++HP Y+ I   L  +  +++
Sbjct: 490 RWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQME 549

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
             GYV +T  V++D+EEE+K   LC HSE++AI FG+IS   G  IR+ KNLRVC DCH 
Sbjct: 550 REGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHT 609

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            TK ISK+  REI+VRD +RFHHFK+GKCSC  +W
Sbjct: 610 ATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 44/252 (17%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
           MYA+   +    +VF  + + D +   ++I+ C + G       MFD             
Sbjct: 280 MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNG-------MFD------------- 319

Query: 61  LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
                      E L  F  M I  +K N VS  S++ AC HL  L  G+  H YI R   
Sbjct: 320 -----------EGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEG 368

Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKS 174
           +K       A++   S  G +++A  +F  M +       +  + +V   L   G  E++
Sbjct: 369 VKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEA 428

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLV 233
            E  S M    + P    + ++L  C V   +E   +     ++ + ++P  +  Y  L 
Sbjct: 429 YEFISDMH---IEPTGSVWSTLLAACRVHKNIELAEK---VSKKLFTVDPQNIGAYVLLS 482

Query: 234 DLYGRAGRLDEA 245
           ++Y  AGR  +A
Sbjct: 483 NIYSAAGRWKDA 494


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 189/460 (41%), Positives = 279/460 (60%), Gaps = 8/460 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
           YA+ G +   +++FD I  PDV+   AM+ A +    +D A+ MFD + ++  ++WN M+
Sbjct: 253 YAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMV 312

Query: 62  AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
           A YAQ G   EA  +F  +   +V  + V +V    A  H   L + R     ++    K
Sbjct: 313 AAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVV----AYAHNMDLAEARRIFYSMDE---K 365

Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
            TVT  TA+V M ++ G + +A + F  M  RNV +W S+I G+A  G G  ++    +M
Sbjct: 366 DTVTW-TAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVM 424

Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
           +  G +P+ +TF+ +L  C  VGLVEEG  HF SM+ ++G+ PW EHY  +VD+ GRAG+
Sbjct: 425 RNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQ 484

Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
           L  A +++  MP  P  GAWG+LL +C+ + + ++G  A+  L++ + ++ G YVLL+N+
Sbjct: 485 LGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLLANM 544

Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
           Y+        + VR  MKA+GVKK PG S+I VD  +H F AG+ +HPR+ EI   L  +
Sbjct: 545 YSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRL 604

Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVC 421
              +K AGY  +T  V++ + +EEKE  L  HSEK+AIAF  I+ + G PIRI+KNLRVC
Sbjct: 605 QELMKKAGYQPDTKAVLHSVLDEEKEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRVC 664

Query: 422 WDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
            DCH  TK +SK+  REIIVRD  RFH+F+ G CSC  YW
Sbjct: 665 SDCHTATKFLSKLLQREIIVRDGYRFHNFENGTCSCGDYW 704



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 19/243 (7%)

Query: 14  VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
           +FD +   + V   A++SA A+ G V LAR  F+ MP  D +AW A++A   Q G+  EA
Sbjct: 110 IFDEMPRREEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEA 169

Query: 74  LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI-ERNRLKMTVTLGTALVD 132
             L+ L+   D+    V+  +++ A    G L + +  +  + ERNR+       TA++ 
Sbjct: 170 EVLYDLIPERDL----VAWTALIQAYGVNGQLTESKRVYALMPERNRVSH-----TAMII 220

Query: 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192
            YS+ G + +A      + + +  T TS+I   A NG  + + E+F  +K     P+ + 
Sbjct: 221 AYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSIKN----PDVIA 276

Query: 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
             +++       +++  +  FDS++++      L  +  +V  Y +AG LDEA  + + +
Sbjct: 277 CNAMMEAYSSAQMLDHAKAMFDSIKQKT-----LVSWNTMVAAYAQAGNLDEAKSIFDSI 331

Query: 253 PMK 255
           P K
Sbjct: 332 PHK 334



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 11/138 (7%)

Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
           + +YS+ G++  A   F  +   NV +W S+I G + +G    + E+F+ M     R + 
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMP----RWSS 56

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI- 249
            ++ S++ G    G +      FD    E+ +  W      L+  Y     + EA  VI 
Sbjct: 57  SSWNSMITGYAQSGDLAGATAMFDRT-PEHNVISW----NALITGYSDNRMIPEAKGVIF 111

Query: 250 NKMPMKPHAGAWGALLNA 267
           ++MP +    +W ALL+A
Sbjct: 112 DEMPRREEV-SWNALLSA 128


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 275/442 (62%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
           + +V   TA++   AKCG V  A  +F+ MPER  + W++M+AGY Q     EAL LFH 
Sbjct: 153 DSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHR 212

Query: 80  MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
            Q   ++ N+ ++ S LSAC    AL +G+       +  +   + + ++L+DMY+KCG 
Sbjct: 213 AQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGI 272

Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
           + +A   F  ++E+NV  W +++ G + +    +++  F  M+Q G+ PN++T++SVL  
Sbjct: 273 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 332

Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
           C  +GLVE+GR++FD M R + + P + HY C+VD+ GRAG L EA D I++MP    A 
Sbjct: 333 CSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 392

Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
            WG+LL +CR+Y+N E+ E+A++ L E+E  N G +VLLSNIYA +  W+ V   R ++K
Sbjct: 393 MWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLK 452

Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
               KK  G S IE+  +VH F  G+  HPR  EI + L ++   +K  GY A T   ++
Sbjct: 453 ESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLH 512

Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
           D+EE  K++ L  HSEK+A+ FG++ L  G PIRI+KNLR+C DCH   K+ S +  REI
Sbjct: 513 DVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREI 572

Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
           IVRD NRFHHFK G CSC  +W
Sbjct: 573 IVRDTNRFHHFKNGYCSCGEFW 594



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 2/246 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D +    +++  +KCG V+ ARK+FDEMP R  ++WN M+  + Q G   +AL LF  M
Sbjct: 53  ADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQM 112

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
           Q      +E ++ SV+ AC     + + +  H +  +  L   V +GTAL+D+Y+KCG +
Sbjct: 113 QKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLV 172

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  M ER+  TW+S++ G   N   E++L LF   +  G+  N+ T  S L  C
Sbjct: 173 KDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSAC 232

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
                + EG++   ++  + GI   +     L+D+Y + G ++EA  V + +  K +   
Sbjct: 233 AARAALIEGKQ-VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEK-NVVL 290

Query: 261 WGALLN 266
           W A+L+
Sbjct: 291 WNAILS 296



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 2/159 (1%)

Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
           +G   H  I R  L+        L++MYSKCG +  A   F  M  R++ +W +++G   
Sbjct: 38  EGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHT 97

Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
            NG  EK+L LF  M++ G   +E T  SV+  C     V E ++       +  ++  +
Sbjct: 98  QNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ-LHGFALKTALDSNV 156

Query: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
                L+D+Y + G + +A  V   MP +     W +++
Sbjct: 157 FVGTALLDVYAKCGLVKDANLVFECMPERSDV-TWSSMV 194


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 179/435 (41%), Positives = 264/435 (60%)

Query: 27  TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
           TA++   AKC  +  A  +F++MPER  + W+++ AGY Q G   EALHLF   Q   V+
Sbjct: 197 TAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVE 256

Query: 87  LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
           L E ++ ++LSAC  L    +G   H  I +        +  +LVD+Y++CG + KA   
Sbjct: 257 LTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYAL 316

Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
           F  M+ +NV  W ++I   + +    +++ LF  M+Q G+ PNEVT++SVL  C   GLV
Sbjct: 317 FAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLV 376

Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
           E+GR +F  +  +  +EP + HY C+VD+ GR+G+ DEA +++NKMP +P A  WG+LL 
Sbjct: 377 EKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLG 436

Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
           +CR Y N  +  +A+ +L +LE  N G +VLLSN+YA S NW+ V+  R+ +K  G KK 
Sbjct: 437 SCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKE 496

Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
            G S IE   +VH F  G+  HPR  +I   L EI   ++      +    ++D+  E+K
Sbjct: 497 MGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQK 556

Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
           E+ L  HSEK+A++FGLISL   +PI I KNLR+C DCH   K+ + +  R +IVRD NR
Sbjct: 557 EELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNR 616

Query: 447 FHHFKEGKCSCKGYW 461
           FHHFK+G CSC  +W
Sbjct: 617 FHHFKDGSCSCGDFW 631



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 2/245 (0%)

Query: 21  PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
            D +    +I+   KCG  D AR +FD M  R  ++WN M+AGY   G+  +AL LF  M
Sbjct: 90  TDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM 149

Query: 81  QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
                 ++E ++ S + AC    A+++ +  H    +  L     +GTA++D+Y+KC  +
Sbjct: 150 HREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMI 209

Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
             A   F  M ER + TW+S+  G   NG  E++L LF   ++ GV   E T  ++L  C
Sbjct: 210 KDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSAC 269

Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
             + L  EG +   ++  + G          LVD+Y R G++++A  +   M  K +   
Sbjct: 270 ASLALKIEGIQ-LHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHK-NVVI 327

Query: 261 WGALL 265
           W A++
Sbjct: 328 WNAMI 332


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 179/431 (41%), Positives = 273/431 (63%), Gaps = 1/431 (0%)

Query: 28   AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
            A+I+  AKCG V+ AR +F ++P +D ++WN M+ GY+Q     EAL LF  MQ    K 
Sbjct: 712  ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKP 770

Query: 88   NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
            ++++M  VL AC  L ALD+GR  H +I R      + +  ALVDMY+KCG +  A   F
Sbjct: 771  DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLF 830

Query: 148  WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
              + ++++ +WT +I G  M+G G +++  F+ M+ AG+ P+E +F  +L  C   GL+ 
Sbjct: 831  DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLN 890

Query: 208  EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
            EG + F+SMR E G+EP LEHY C+VDL  R G L +A   I  MP+KP    WG LL+ 
Sbjct: 891  EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950

Query: 268  CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327
            CR++ + ++ E  +  + ELE  N   YV+L+N+YAE++ W+ V  +R+ M+ +G K+ P
Sbjct: 951  CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 1010

Query: 328  GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKE 387
            GCS IEV  + + F AG+  HP+   I+V+L +++ +++   Y +    V+ + ++ EKE
Sbjct: 1011 GCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKE 1070

Query: 388  DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
               C HSEK A+AFG+++L  G  +R+ KN RVC DCH++ K +SK   REI++RD NRF
Sbjct: 1071 MIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRF 1130

Query: 448  HHFKEGKCSCK 458
            HHFK+G CSC+
Sbjct: 1131 HHFKDGLCSCR 1141



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 134/258 (51%), Gaps = 5/258 (1%)

Query: 2   YAELGCLGYCQKVFDGIHEPDVVCQTA----MISACAKCGDVDLARKMFDEMPERDPIAW 57
           +A LG +  C++V   + +      TA    +I+A  K G V+ A  +FDE+ E D ++W
Sbjct: 480 FAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSW 539

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           N+M+ G    G S   L +F  M I  V+++  ++VSVL A  ++G L  GR  H +  +
Sbjct: 540 NSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVK 599

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
                 V     L+DMYSKCGN+N A + F  M +  + +WTS I      G    ++ L
Sbjct: 600 ACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGL 659

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
           F  M+  GVRP+  T  S++  C     +++GR+   S   + G+   L     L+++Y 
Sbjct: 660 FDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSYVIKNGMGSNLPVTNALINMYA 718

Query: 238 RAGRLDEALDVINKMPMK 255
           + G ++EA  V +K+P+K
Sbjct: 719 KCGSVEEARLVFSKIPVK 736



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 133/236 (56%), Gaps = 6/236 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           +VV    ++   +KCG+++ A ++F +M +   ++W + +A Y + G   +A+ LF  MQ
Sbjct: 605 EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQ 664

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
              V+ +  ++ S++ AC    +LD+GR  H Y+ +N +   + +  AL++MY+KCG++ 
Sbjct: 665 SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVE 724

Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
           +A   F  +  +++ +W ++IGG + N    ++LELF L  Q   +P+++T   VL  C 
Sbjct: 725 EARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELF-LDMQKQFKPDDITMACVLPACA 783

Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKMPMK 255
            +  +++GRE H   +RR Y  +    H  C LVD+Y + G L  A  + + +P K
Sbjct: 784 GLAALDKGREIHGHILRRGYFSD---LHVACALVDMYAKCGLLVLAQLLFDMIPKK 836



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 3/218 (1%)

Query: 36  CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSV 95
           CGD+   RK+FD++       WN +++ YA+ G  RE++ LF  MQ   V  N  +   V
Sbjct: 417 CGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCV 476

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
           L     LG + + +  H Y+ +        +  +L+  Y K G +  A + F  + E +V
Sbjct: 477 LKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDV 536

Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFD 214
            +W S+I G  +NG     LE+F  M   GV  +  T VSVL     +G +  GR  H  
Sbjct: 537 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGF 596

Query: 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
            ++  +  E    +   L+D+Y + G L+ A +V  KM
Sbjct: 597 GVKACFSEEVVFSN--TLLDMYSKCGNLNGATEVFVKM 632



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 4/146 (2%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
           D+    A++   AKCG + LA+ +FD +P++D I+W  M+AGY   G   EA+  F+ M+
Sbjct: 806 DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 865

Query: 82  IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSKCGN 139
           I  ++ +E S   +L+AC+H G L++G W      RN   +   L     +VD+ ++ GN
Sbjct: 866 IAGIEPDESSFSVILNACSHSGLLNEG-WKFFNSMRNECGVEPKLEHYACVVDLLARMGN 924

Query: 140 MNKAMDFFWGMK-ERNVYTWTSVIGG 164
           ++KA  F   M  + +   W  ++ G
Sbjct: 925 LSKAYKFIESMPIKPDTTIWGVLLSG 950



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 6/212 (2%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           NA +  + + G  R A+ L    + +++ LN  S  SVL  C    +L+ G+  H  I  
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
           N + +   LG  LV MY  CG++ +    F  +    V+ W  ++   A  G   +S+ L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE-GREHFDSMRREYGIEPWLEHYGCLVDLY 236
           F  M++ GV  N  TF  VL+    +G V+E  R H   ++  +G    +     L+  Y
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV--VNSLIAAY 515

Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
            + G ++ A ++ +++  +P   +W +++N C
Sbjct: 516 FKFGGVESAHNLFDELS-EPDVVSWNSMINGC 546


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 191/457 (41%), Positives = 272/457 (59%), Gaps = 7/457 (1%)

Query: 2   YAELGCLGYCQKVFDGI-----HEPDVVCQTAMISAC--AKCGDVDLARKMFDEMPERDP 54
           +A  G  G    VF  +      +PD     +++ +   A+  D+ L + +FDEM  +  
Sbjct: 88  FAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGL 147

Query: 55  IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
           I+WNAMLA Y       EA+ LF  MQ   ++ + V++ +VL +C  + AL  G+  H  
Sbjct: 148 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 207

Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
           I+R R+  ++ L  AL+DMY+ CG + +A D F  M  R+V +WTS+I     +G G ++
Sbjct: 208 IKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREA 267

Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234
           ++LF  M   G+ P+ + FV++L  C   GL++ G+ +F SM  E+ I P LEHY C+VD
Sbjct: 268 IDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVD 327

Query: 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294
           L GRAG + EA D I  MP+KP+   WGALL ACR++ N ++G LA+  L+ L  K  G 
Sbjct: 328 LLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGY 387

Query: 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEI 354
           YVLLSNIYA +  W  V  VR +M++KG+KKLPG S  E+   VH F  GD +HP+   I
Sbjct: 388 YVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMI 447

Query: 355 EVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
              L E+ RR++  GY       ++D+EEE+KE  L  HSEK+AIAF LI+   G PIRI
Sbjct: 448 YKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRI 507

Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451
             NLR C DCH   K+IS +  REII++D NR H+ K
Sbjct: 508 TMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 13/215 (6%)

Query: 58  NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
           ++ ++ YA+CG+  +A  +F  MQ  DV    VS  +++S   H G    GR   V+ E 
Sbjct: 51  HSAISMYARCGRPDDAYQMFEEMQYRDV----VSWNAMISGFAHAGLF--GRAMDVFREL 104

Query: 118 NRLKMTV----TLGTALVDM-YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
             L+       T+ + L  M  ++  ++      F  M+ + + +W +++     N    
Sbjct: 105 VALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHV 164

Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
           +++ELF  M++ G+ P+ VT  +VL  C  V  +  G+   + ++R       L     L
Sbjct: 165 EAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE-NAL 223

Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
           +D+Y   G L EA DV + M  +    +W ++++A
Sbjct: 224 MDMYANCGCLKEARDVFDSMGTRD-VVSWTSIISA 257



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 96  LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
             +C     L  GR  H    R  L   V +  + + MY++CG  + A   F  M+ R+V
Sbjct: 19  FKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDV 78

Query: 156 YTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVRPNEVTFVSVLR--GCCVVGLVEEGREH 212
            +W ++I G A  G   +++++F  L+     +P+  T  S+L   G   V  +   +  
Sbjct: 79  VSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGV 138

Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNAC 268
           FD MR + G+  W      ++ +Y       EA+++  +M    ++P A     +L +C
Sbjct: 139 FDEMRFK-GLISW----NAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSC 192


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 183/455 (40%), Positives = 278/455 (61%), Gaps = 15/455 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYAQCGKSREALHLF 77
           DVV  T+++ ACA+ G +D  + + D +     E +    NA++  YA+CG    A  +F
Sbjct: 351 DVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVF 410

Query: 78  HLMQIHDV----------KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
             M + D+          K +  +M  VL AC  L AL++G+  H YI RN       + 
Sbjct: 411 STMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            ALVD+Y KCG +  A   F  +  +++ +WT +I G  M+G G +++  F+ M+ AG+ 
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+EV+F+S+L  C   GL+E+G   F  M+ ++ IEP LEHY C+VDL  R G L +A +
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
            I  +P+ P A  WGALL  CR Y + E+ E  + ++ ELE +N G YVLL+NIYAE++ 
Sbjct: 591 FIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEK 650

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG-DETHPRYNEIEVMLGEISRRLK 366
           W+ V  +R+ +  +G++K PGCS IE+  +V+ F +G + +HP    IE +L ++ R++K
Sbjct: 651 WEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMK 710

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
             G+   T   + + +E +KE  LC HSEK+A+AFGL++L     IR+ KNLRVC DCH+
Sbjct: 711 EEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHE 770

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           + K +SK   REI++RD NRFHHFK+G CSC+G+W
Sbjct: 771 MAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 149/311 (47%), Gaps = 34/311 (10%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDV--------------------D 40
            YA  G L   ++VFD + + +V     M+S  AK GD                     +
Sbjct: 143 FYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPE 202

Query: 41  LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100
            A ++FD++ +RD I+WN+M++GY   G +   L ++  M    + ++  +++SVL  C 
Sbjct: 203 SAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
           + G L  G+  H    ++  +  +     L+DMYSKCG+++ A+  F  M ERNV +WTS
Sbjct: 263 NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           +I G   +G  + +++L   M++ GV+ + V   S+L  C   G ++ G++  D ++   
Sbjct: 323 MIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN- 381

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-------------PMKPHAGAWGALLNA 267
            +E  L     L+D+Y + G ++ A  V + M              +KP +     +L A
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPA 441

Query: 268 CRMYKNTEMGE 278
           C      E G+
Sbjct: 442 CASLSALERGK 452



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 54/247 (21%)

Query: 57  WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
           +NA +  + Q G    A+ L  + +  +++    S  SVL  C  L +   G+  H  I+
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCKKSELETKTYS--SVLQLCAGLKSFTDGKKVHSIIK 126

Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY-------------------- 156
            N + +   LG  LV  Y+ CG++ +    F  M+++NVY                    
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 157 -------------------------------TWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
                                          +W S+I G   NG  E+ L ++  M   G
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
           +  +  T +SVL GC   G +  G+    S+  +   E  +     L+D+Y + G LD A
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 246 LDVINKM 252
           L V  KM
Sbjct: 306 LRVFEKM 312


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 183/455 (40%), Positives = 277/455 (60%), Gaps = 15/455 (3%)

Query: 22  DVVCQTAMISACAKCGDVDLARKMFDEMPERDP----IAWNAMLAGYAQCGKSREALHLF 77
           DVV  T+++ ACA+ G +D  + + D +   +        NA++  YA+CG    A  +F
Sbjct: 213 DVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVF 272

Query: 78  HLMQIHDV----------KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
             M + D+          K +  +M  +L AC  L AL++G+  H YI RN       + 
Sbjct: 273 STMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA 332

Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
            ALVD+Y KCG +  A   F  +  +++ +WT +I G  M+G G +++  F+ M+ AG+ 
Sbjct: 333 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE 392

Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
           P+EV+F+S+L  C   GL+E+G   F  M+ ++ IEP LEHY C+VDL  R G L +A  
Sbjct: 393 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYK 452

Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
            I  +P+ P A  WGALL  CR+Y + E+ E  + ++ ELE +N G YVLL+NIYAE++ 
Sbjct: 453 FIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEK 512

Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG-DETHPRYNEIEVMLGEISRRLK 366
           W+ V  +R+ +  KG++K PGCS IE+   V+ F +G + +HP   +IE +L ++ R++K
Sbjct: 513 WEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMK 572

Query: 367 LAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
             GY   T   + + +E +KE  LC HSEK+A+AFGL++L     IR+ KNLRVC DCH+
Sbjct: 573 EEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHE 632

Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           + K +SK   REI++RD NRFHHFK+G CSC+G+W
Sbjct: 633 MAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 34/311 (10%)

Query: 1   MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDV--------------------D 40
            YA  G L   ++VFD + + +V     M+S  AK GD                     +
Sbjct: 5   FYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSE 64

Query: 41  LARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100
            A ++FD++ +RD I+WN+M++GY   G +   L ++  M    + ++  +++SVL  C 
Sbjct: 65  SASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 124

Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
             G L  G+  H    ++  +  +     L+DMYSKCG+++ A+  F  M ERNV +WTS
Sbjct: 125 KSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 184

Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220
           +I G   +G  + ++ L   M++ GV+ + V   S+L  C   G ++ G++  D ++   
Sbjct: 185 MIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN- 243

Query: 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-------------PMKPHAGAWGALLNA 267
            +   L     L+D+Y + G ++ A  V + M              +KP +     +L A
Sbjct: 244 NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPA 303

Query: 268 CRMYKNTEMGE 278
           C      E G+
Sbjct: 304 CASLSALERGK 314



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 52/174 (29%)

Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVY--------------------------------- 156
           LV  Y+ CG++ +    F  M+++NVY                                 
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 157 ------------------TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
                             +W S+I G   NG  E+ L ++  M   G+  +  T +SVL 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           GC   G +  G+    S+  +   E  +     L+D+Y + G LD AL V  KM
Sbjct: 122 GCAKSGTLSLGKA-VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 174


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 282/466 (60%), Gaps = 10/466 (2%)

Query: 5   LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
           LG + + Q V D + E +V+   A++S  AKCG    AR +FD+M +R  I+W  +++ Y
Sbjct: 365 LGRVLHKQIVNDEL-EKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAY 423

Query: 65  AQCGKSREALHLFHLM-------QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
            +     EA HLF  M           VK + ++ V++L+AC  + AL+QG+        
Sbjct: 424 VRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAAS 483

Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLE 176
             L     +GTA+V++Y KCG + +    F G+  R +V  W ++I   A  G   ++L+
Sbjct: 484 CGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALK 543

Query: 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY-GIEPWLEHYGCLVDL 235
           LF  M+  GVRP+  +FVS+L  C   GL ++G+ +F SM  EY  +   ++H+GC+ DL
Sbjct: 544 LFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADL 603

Query: 236 YGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295
            GR GRL EA + + K+P+KP A AW +LL ACR +++ +  +  + KL+ LE +    Y
Sbjct: 604 LGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGY 663

Query: 296 VLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIE 355
           V LSNIYAE + W  V  VR+ M  +GVKK  G S IE+ + +H+F  GD+ HPR  EI 
Sbjct: 664 VALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIR 723

Query: 356 VMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIV 415
             L ++  ++K  GYV +T  V++ ++E+EKE  L  HSE++AIA GLIS   G P+R+ 
Sbjct: 724 EELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVT 783

Query: 416 KNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
           KNLRVC DCH  TK+ISK+  R+I+VRD  RFH FK+GKCSC+ YW
Sbjct: 784 KNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 134/255 (52%), Gaps = 13/255 (5%)

Query: 20  EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLF 77
           E +++   A+++   +CG V+ ARK+FD M E  RD ++WN ML+ Y    + ++A+ L+
Sbjct: 279 ESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLY 338

Query: 78  HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
             MQ+   + ++V+ VS+LSAC+    +  GR  H  I  + L+  V +G ALV MY+KC
Sbjct: 339 QRMQL---RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKC 395

Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-------KQAGVRPNE 190
           G+  +A   F  M++R++ +WT++I          ++  LF  M           V+P+ 
Sbjct: 396 GSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDA 455

Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
           + FV++L  C  V  +E+G+          G+         +V+LYG+ G ++E   + +
Sbjct: 456 LAFVTILNACADVSALEQGK-MVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFD 514

Query: 251 KMPMKPHAGAWGALL 265
            +  +P    W A++
Sbjct: 515 GVCSRPDVQLWNAMI 529



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 2/225 (0%)

Query: 29  MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN 88
           ++S  A C     A+  FD + +R+  +W  ++A +A  G+S+E L     M+   V+ +
Sbjct: 85  IVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPD 144

Query: 89  EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
            V+ ++ L +C    +L  G   H  +  +RL++   +  AL++MY KCG+++ A   F 
Sbjct: 145 AVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFA 204

Query: 149 GM-KERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
            M + RNV +W+ + G  A++G   ++L  F  M   G++  +   V++L  C    LV+
Sbjct: 205 KMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQ 264

Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
           +GR    S     G E  L     ++ +YGR G ++EA  V + M
Sbjct: 265 DGR-LIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAM 308



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 128/259 (49%), Gaps = 8/259 (3%)

Query: 12  QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKS 70
           Q V D   E D     A+++   KCG +  A+++F +M   R+ I+W+ M   +A  G  
Sbjct: 169 QMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNV 228

Query: 71  REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
            EAL  F  M +  +K  + +MV++LSAC+    +  GR  H  I  +  +  + +  A+
Sbjct: 229 WEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAV 288

Query: 131 VDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
           + MY +CG + +A   F  M E  R+V +W  ++     N  G+ +++L+  M+   +R 
Sbjct: 289 MTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRA 345

Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
           ++VT+VS+L  C     V  GR     +  +  +E  +     LV +Y + G   EA  V
Sbjct: 346 DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDE-LEKNVIVGNALVSMYAKCGSHTEARAV 404

Query: 249 INKMPMKPHAGAWGALLNA 267
            +KM  +    +W  +++A
Sbjct: 405 FDKMEQRSII-SWTTIISA 422



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 4/191 (2%)

Query: 85  VKLNEVSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
           V+    +   +L  C    AL +GR  H + ++ N L   + LG  +V MY+ C +   A
Sbjct: 39  VRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDA 98

Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
              F  +++RN+Y+WT ++   A++G  +++L     M+Q GVRP+ VTF++ L  C   
Sbjct: 99  KAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDP 158

Query: 204 GLVEEG-REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
             + +G R H   +     I+P + +   L+++Y + G L  A  V  KM    +  +W 
Sbjct: 159 ESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 216

Query: 263 ALLNACRMYKN 273
            +  A  ++ N
Sbjct: 217 IMAGAHALHGN 227


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,077,100,963
Number of Sequences: 23463169
Number of extensions: 287564789
Number of successful extensions: 771181
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8956
Number of HSP's successfully gapped in prelim test: 2736
Number of HSP's that attempted gapping in prelim test: 633114
Number of HSP's gapped (non-prelim): 58676
length of query: 461
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 315
effective length of database: 8,933,572,693
effective search space: 2814075398295
effective search space used: 2814075398295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)