BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012539
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR--REYGIEPW 225
N + ++F M V PNE TF + G + ++ FD ++ + +GI+P
Sbjct: 83 NPGLSRGFDIFKQMIVDKVVPNEATFTN---GARLAVAKDDPEMAFDMVKQMKAFGIQPR 139
Query: 226 LEHYGCLVDLYGRAGRLDEALDV 248
L YG + + R G D+A +V
Sbjct: 140 LRSYGPALFGFCRKGDADKAYEV 162
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 178 FSLMKQA---GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR--REYGIEPWLEHYGCL 232
F + KQ V PNE TF + G + ++ FD ++ + +GI+P L YG
Sbjct: 90 FDIFKQXIVDKVVPNEATFTN---GARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPA 146
Query: 233 VDLYGRAGRLDEALDV 248
+ + R G D+A +V
Sbjct: 147 LFGFCRKGDADKAYEV 162
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.3 bits (72), Expect = 0.62, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 232 LVDLYGRAGRLDEALDVINK-MPMKPH-AGAWGALLNACRMYKNTEMGELAS--RKLVEL 287
L + Y + G DEA++ K + + P+ A AW L NA YK + E +K +EL
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA--YYKQGDYDEAIEYYQKALEL 72
Query: 288 ETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
+ N A+ L N Y + ++D I Q
Sbjct: 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 243 DEALDVINKMPMKPHAGAWGALLNACR-MYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
+E LD++ +P+K + +L R ++ + A R L LE YV L I
Sbjct: 147 EETLDIVMTIPVKGKKNFFKGMLRTLRWIFGEEKRPRTARRYLRHLEDL---GYVRLKKI 203
Query: 302 YAESKNWDRVINVRQIMKA 320
E +WD + N R++ +A
Sbjct: 204 GYEVLDWDSLKNYRRLYEA 222
>pdb|2CW8|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 243 DEALDVINKMPMKPHAGAWGALLNACR-MYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
+E LD++ +P+K + L R ++ + A R L LE YV L I
Sbjct: 147 EETLDIVXTIPVKGKKNFFKGXLRTLRWIFGEEKRPRTARRYLRHLEDL---GYVRLKKI 203
Query: 302 YAESKNWDRVINVRQIMKA 320
E +WD + N R++ +A
Sbjct: 204 GYEVLDWDSLKNYRRLYEA 222
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 232 LVDLYGRAGRLDEALDVINK-MPMKPH-AGAWGALLNACRMYKNTEMGELAS--RKLVEL 287
L + Y + G DEA++ K + + P A AW L NA YK + E +K +EL
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA--YYKQGDYDEAIEYYQKALEL 64
Query: 288 ETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
+ ++ A+ L N Y + ++D I Q
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 232 LVDLYGRAGRLDEALDVINK-MPMKPH-AGAWGALLNACRMYKNTEMGELAS--RKLVEL 287
L + Y + G DEA++ K + + P A AW L NA YK + E +K +EL
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA--YYKQGDYDEAIEYYQKALEL 98
Query: 288 ETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
+ ++ A+ L N Y + ++D I Q
Sbjct: 99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
>pdb|1T0Q|B Chain B, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|B Chain B, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
pdb|2RDB|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
pdb|3N1X|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
pdb|3N1Y|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
pdb|3N1Z|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
pdb|3N20|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
pdb|3RN9|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sL272E DOUBLE MUTANT
pdb|3RNA|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
pdb|3RNB|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
pdb|3RNC|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
pdb|3RNE|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI276E DOUBLE MUTANT
pdb|3RNF|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
pdb|3RNG|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 330
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 73 ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
A +LFH +Q+ V +++++ S ++ C D RW L T L +
Sbjct: 128 ARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRW---------LTHTAYRTRELAN 178
Query: 133 MYSKCGNMNKAMDFFWGMKERNVY 156
Y G +G +ER+V+
Sbjct: 179 CYPDVG---------FGKRERDVW 193
>pdb|2INC|B Chain B, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
Length = 322
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 73 ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
A +LFH +Q+ V +++++ S ++ C D RW L T L +
Sbjct: 121 ARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRW---------LTHTAYRTRELAN 171
Query: 133 MYSKCGNMNKAMDFFWGMKERNVY 156
Y G +G +ER+V+
Sbjct: 172 CYPDVG---------FGKRERDVW 186
>pdb|2IND|B Chain B, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 323
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 73 ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132
A +LFH +Q+ V +++++ S ++ C D RW L T L +
Sbjct: 121 ARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRW---------LTHTAYRTRELAN 171
Query: 133 MYSKCGNMNKAMDFFWGMKERNVY 156
Y G +G +ER+V+
Sbjct: 172 CYPDVG---------FGKRERDVW 186
>pdb|3DHG|B Chain B, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHG|E Chain E, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHH|B Chain B, Crystal Structure Of Resting State Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
pdb|3DHI|B Chain B, Crystal Structure Of Reduced Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
Length = 327
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 15 FDGIHEPD-VVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSR 71
+D +PD +V +T + + G + +FD+ ER D + A+C
Sbjct: 69 WDAFTDPDQLVYRTYNL---MQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPL 125
Query: 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW-AHVYIERNRLKMT 123
+LFH +Q+ + +++ S +S C L D RW H + L +T
Sbjct: 126 R--YLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLT 176
>pdb|3GE3|B Chain B, Crystal Structure Of The Reduced Toluene 4-Monooxygenase
Hd T201a Mutant Complex
pdb|3GE8|B Chain B, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3GE8|F Chain F, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3I5J|B Chain B, Diferric Resting State Toluene 4-Monooxygenase Hd Complex
pdb|3I63|B Chain B, Peroxide Bound Toluene 4-Monooxygenase
Length = 327
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 15 FDGIHEPD-VVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSR 71
+D +PD +V +T + + G + +FD+ ER D + A+C
Sbjct: 69 WDAFTDPDQLVYRTYNL---MQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPL 125
Query: 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW-AHVYIERNRLKMT 123
+LFH +Q+ + +++ S +S C L D RW H + L +T
Sbjct: 126 R--YLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLT 176
>pdb|3RI7|B Chain B, Toluene 4 Monooxygenase Hd Mutant G103l
Length = 305
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 15 FDGIHEPD-VVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSR 71
+D +PD +V +T + + G + +FD+ ER D + A+C
Sbjct: 68 WDAFTDPDQLVYRTYNL---MQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPL 124
Query: 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW-AHVYIERNRLKMT 123
+LFH +Q+ + +++ S +S C L D RW H + L +T
Sbjct: 125 R--YLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLT 175
>pdb|3Q14|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Cresol
pdb|3Q2A|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
P-Aminobenzoate
pdb|3Q3M|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3M|F Chain F, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3N|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Nitrophenol
pdb|3Q3O|B Chain B, Toluene 4 Monooxygenase Hd Complex With Phenol
Length = 307
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 15 FDGIHEPD-VVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSR 71
+D +PD +V +T + + G + +FD+ ER D + A+C
Sbjct: 69 WDAFTDPDQLVYRTYNL---MQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPL 125
Query: 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW-AHVYIERNRLKMT 123
+LFH +Q+ + +++ S +S C L D RW H + L +T
Sbjct: 126 R--YLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLT 176
>pdb|3RMK|B Chain B, Toluene 4 Monooxygenase H With 4-bromophenol
pdb|3RMK|E Chain E, Toluene 4 Monooxygenase H With 4-bromophenol
Length = 306
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 15 FDGIHEPD-VVCQTAMISACAKCGDVDLARKMFDEMPER--DPIAWNAMLAGYAQCGKSR 71
+D +PD +V +T + + G + +FD+ ER D + A+C
Sbjct: 68 WDAFTDPDQLVYRTYNL---MQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPL 124
Query: 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW-AHVYIERNRLKMT 123
+LFH +Q+ + +++ S +S C L D RW H + L +T
Sbjct: 125 R--YLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLT 175
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From
Archaeoglobus Fulgidus
Length = 558
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 362 SRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFG--LISLKEGVPIRIVKNLR 419
SRRL+ N + DI EE K S K + +I++KEG P+ LR
Sbjct: 271 SRRLE------NVTNALPDIVEE------IKKSVKPGVILDGEVIAVKEGKPMPFQHVLR 318
Query: 420 VCWDCHDVTKMISKV 434
HDV KM+ K+
Sbjct: 319 RFRRKHDVAKMVEKI 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,701,700
Number of Sequences: 62578
Number of extensions: 550038
Number of successful extensions: 1222
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 23
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)