BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012539
(461 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/461 (71%), Positives = 396/461 (85%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YAELGCL C KVF+ I PD VC+TAM++ACA+CGDV ARK+F+ MPERDPIAWNAM
Sbjct: 152 LYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAM 211
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GYAQ G+SREAL++FHLMQ+ VK+N V+M+SVLSACT LGALDQGRWAH YIERN++
Sbjct: 212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKI 271
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
K+TV L T LVD+Y+KCG+M KAM+ FWGM+E+NVYTW+S + GLAMNG GEK LELFSL
Sbjct: 272 KITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ GV PN VTFVSVLRGC VVG V+EG+ HFDSMR E+GIEP LEHYGCLVDLY RAG
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RL++A+ +I +MPMKPHA W +LL+A RMYKN E+G LAS+K++ELET NHGAYVLLSN
Sbjct: 392 RLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSN 451
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S +WD V +VRQ MK+KGV+K PGCSV+EV+ EVHEFF GD++HP+Y +I+ + +
Sbjct: 452 IYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKD 511
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
ISRRL+LAGY A+T PVM+DI+EEEKED LC HSEK AIAFG++SLKE VPIRIVKNLRV
Sbjct: 512 ISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRV 571
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH V+ MISK+FNREIIVRDRNRFHHFK+G CSC G+W
Sbjct: 572 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 213/461 (46%), Positives = 309/461 (67%), Gaps = 1/461 (0%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
YA G +FD I EPD V ++I K G +D+A +F +M E++ I+W M+
Sbjct: 160 YAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMI 219
Query: 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
+GY Q ++EAL LFH MQ DV+ + VS+ + LSAC LGAL+QG+W H Y+ + R++
Sbjct: 220 SGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIR 279
Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
M LG L+DMY+KCG M +A++ F +K+++V WT++I G A +G G +++ F M
Sbjct: 280 MDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEM 339
Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
++ G++PN +TF +VL C GLVEEG+ F SM R+Y ++P +EHYGC+VDL GRAG
Sbjct: 340 QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGL 399
Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
LDEA I +MP+KP+A WGALL ACR++KN E+GE L+ ++ + G YV +NI
Sbjct: 400 LDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANI 459
Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
+A K WD+ R++MK +GV K+PGCS I ++ HEF AGD +HP +I+ +
Sbjct: 460 HAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIM 519
Query: 362 SRRLKLAGYVANTNPVMYD-IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
R+L+ GYV ++ D ++++E+E + +HSEK+AI +GLI K G IRI+KNLRV
Sbjct: 520 RRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRV 579
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH VTK+ISK++ R+I++RDR RFHHF++GKCSC YW
Sbjct: 580 CKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 137/345 (39%), Gaps = 75/345 (21%)
Query: 1 MYAELGCLGYC--QKVFDGIHE--------PDVVCQTAMISACAKCGDVDL---ARKMFD 47
+Y + CL C Q+ IH D T +S C D A+ +FD
Sbjct: 14 LYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFD 73
Query: 48 EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107
D WN M+ G++ + +L L+ M N + S+L AC++L A ++
Sbjct: 74 GFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEE 133
Query: 108 GRWAHVYIERNRLKMTVTLGTALVDMYS-------------------------------K 136
H I + + V +L++ Y+ K
Sbjct: 134 TTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 193
Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
G M+ A+ F M E+N +WT++I G +++L+LF M+ + V P+ V+ +
Sbjct: 194 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANA 253
Query: 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY------------GC-LVDLYGRAGRLD 243
L C +G +E+G+ W+ Y GC L+D+Y + G ++
Sbjct: 254 LSACAQLGALEQGK--------------WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEME 299
Query: 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
EAL+V + K AW AL++ Y G A K +E++
Sbjct: 300 EALEVFKNIK-KKSVQAWTALISG---YAYHGHGREAISKFMEMQ 340
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 314/463 (67%), Gaps = 2/463 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YA+ G + QKVFD + E +V TAMI+ AK G+V+ AR +FD M ERD ++WN M
Sbjct: 170 VYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVM 229
Query: 61 LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
+ GYAQ G +AL LF L+ K +E+++V+ LSAC+ +GAL+ GRW HV+++ +R
Sbjct: 230 IDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSR 289
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
+++ V + T L+DMYSKCG++ +A+ F +++ W ++I G AM+G + +L LF+
Sbjct: 290 IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFN 349
Query: 180 LMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
M+ G++P ++TF+ L+ C GLV EG F+SM +EYGI+P +EHYGCLV L GR
Sbjct: 350 EMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGR 409
Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
AG+L A + I M M + W ++L +C+++ + +G+ + L+ L KN G YVLL
Sbjct: 410 AGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469
Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
SNIYA +++ V VR +MK KG+ K PG S IE++ +VHEF AGD H + EI ML
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529
Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
+IS R+K GYV NTN V+ D+EE EKE +L HSE++AIA+GLIS K G P++I KNL
Sbjct: 530 RKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589
Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
RVC DCH VTK+ISK+ R+I++RDRNRFHHF +G CSC +W
Sbjct: 590 RVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 38/272 (13%)
Query: 32 ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
A A G + + +F + + D + A + + G +A L+ + ++ NE +
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC-------------- 137
S+L +C+ G+ H ++ + L + + T LVD+Y+K
Sbjct: 133 FSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 138 -----------------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS- 179
GN+ A F M ER++ +W +I G A +G +L LF
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
L+ + +P+E+T V+ L C +G +E GR + I ++ L+D+Y +
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGR-WIHVFVKSSRIRLNVKVCTGLIDMYSKC 307
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
G L+EA+ V N P K AW A++ M+
Sbjct: 308 GSLEEAVLVFNDTPRKDIV-AWNAMIAGYAMH 338
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Query: 104 ALDQGRWAHVYIERNRLKM---TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
++D+ H I R+ L + L L Y+ G + ++ F + +++ +T+
Sbjct: 41 SVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 100
Query: 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRRE 219
I ++NG +++ L+ + + + PNE TF S+L+ C + G+ H ++
Sbjct: 101 AINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFG 156
Query: 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
GI+P++ LVD+Y + G + A V ++MP
Sbjct: 157 LGIDPYVA--TGLVDVYAKGGDVVSAQKVFDRMP 188
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/468 (47%), Positives = 315/468 (67%), Gaps = 7/468 (1%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY+ G L Q+VFD D+ ++++A AK G +D ARK+FDEMPER+ I+W+ +
Sbjct: 106 MYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165
Query: 61 LAGYAQCGKSREALHLFHLMQIHD-----VKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
+ GY CGK +EAL LF MQ+ V+ NE +M +VLSAC LGAL+QG+W H YI
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225
Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKS 174
++ +++ + LGTAL+DMY+KCG++ +A F + +++V ++++I LAM G ++
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285
Query: 175 LELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
+LFS M + + PN VTFV +L C GL+ EG+ +F M E+GI P ++HYGC+V
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
DLYGR+G + EA I MPM+P WG+LL+ RM + + E A ++L+EL+ N G
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 405
Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
AYVLLSN+YA++ W V +R M+ KG+ K+PGCS +EV+ VHEF GDE+
Sbjct: 406 AYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESER 465
Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
I ML EI +RL+ AGYV +T V+ D+ E++KE L HSEK+AIAF L+ + G P+R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525
Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
I+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF++G CSC+ +W
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/463 (45%), Positives = 315/463 (68%), Gaps = 2/463 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G + +++FD + E D V T M+ A D + AR++ + MP++D +AWNA+
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 61 LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
++ Y Q GK EAL +FH +Q+ ++KLN++++VS LSAC +GAL+ GRW H YI+++
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
++M + +AL+ MYSKCG++ K+ + F +++R+V+ W+++IGGLAM+G G +++++F
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455
Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
M++A V+PN VTF +V C GLV+E F M YGI P +HY C+VD+ GR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
G L++A+ I MP+ P WGALL AC+++ N + E+A +L+ELE +N GA+VLLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575
Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
NIYA+ W+ V +R+ M+ G+KK PGCS IE+D +HEF +GD HP ++ L
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635
Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
E+ +LK GY + V+ IEEEE KE +L HSEK+AI +GLIS + IR++KNL
Sbjct: 636 EVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNL 695
Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
RVC DCH V K+IS++++REIIVRDR RFHHF+ G+CSC +W
Sbjct: 696 RVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 155/313 (49%), Gaps = 36/313 (11%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
DV ++I CGD+D A K+F + E+D ++WN+M+ G+ Q G +AL LF M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
DVK + V+MV VLSAC + L+ GR YIE NR+ + +TL A++DMY+KCG++
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV--------------R 187
A F M+E++ TWT+++ G A++ E + E+ + M Q + +
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 188 PNE------------------VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229
PNE +T VS L C VG +E GR S +++GI
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR-WIHSYIKKHGIRMNFHVT 403
Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
L+ +Y + G L+++ +V N + K W A++ M+ K+ E
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANV 462
Query: 290 KNHGAYVLLSNIY 302
K +G V +N++
Sbjct: 463 KPNG--VTFTNVF 473
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 157/336 (46%), Gaps = 18/336 (5%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-H 78
+P + ++A + ++ ARK+FDE+P+ + AWN ++ YA ++ F
Sbjct: 61 DPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLD 120
Query: 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
++ N+ + ++ A + +L G+ H ++ + V + +L+ Y CG
Sbjct: 121 MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG 180
Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
+++ A F +KE++V +W S+I G G+ +K+LELF M+ V+ + VT V VL
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240
Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
C + +E GR+ S E + L ++D+Y + G +++A + + M K +
Sbjct: 241 ACAKIRNLEFGRQ-VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299
Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES-KNWDRVINVRQI 317
W +L+ Y +E E A L + K+ A+ L + Y ++ K + +I ++
Sbjct: 300 -TWTTMLDG---YAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHEL 355
Query: 318 MKAKGVK--------KLPGCS---VIEVDREVHEFF 342
K +K L C+ +E+ R +H +
Sbjct: 356 QLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYI 391
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/462 (47%), Positives = 317/462 (68%), Gaps = 1/462 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA G + ++F + DVV T+M++ KCG V+ AR+MFDEMP R+ W+ M
Sbjct: 161 MYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIM 220
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+ GYA+ +A+ LF M+ V NE MVSV+S+C HLGAL+ G A+ Y+ ++ +
Sbjct: 221 INGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ + LGTALVDM+ +CG++ KA+ F G+ E + +W+S+I GLA++G K++ FS
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M G P +VTF +VL C GLVE+G E +++M++++GIEP LEHYGC+VD+ GRAG
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
+L EA + I KM +KP+A GALL AC++YKNTE+ E L++++ ++ G YVLLSN
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSN 460
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG-DETHPRYNEIEVMLG 359
IYA + WD++ ++R +MK K VKK PG S+IE+D ++++F G D+ HP +I
Sbjct: 461 IYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWE 520
Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
EI +++L GY NT +D++EEEKE ++ HSEK+AIA+G++ K G IRIVKNLR
Sbjct: 521 EILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLR 580
Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
VC DCH VTK+IS+V+ RE+IVRDRNRFHHF+ G CSC+ YW
Sbjct: 581 VCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 113/255 (44%), Gaps = 33/255 (12%)
Query: 42 ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
A +F ++ + +N ++ ++ + +A + M + + ++ ++ A +
Sbjct: 70 AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS-------------------------- 135
+ + G H I R + V + +LV MY+
Sbjct: 130 MECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189
Query: 136 -----KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
KCG + A + F M RN++TW+ +I G A N EK+++LF MK+ GV NE
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANE 249
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
VSV+ C +G +E G ++ + + + + L LVD++ R G +++A+ V
Sbjct: 250 TVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFE 308
Query: 251 KMPMKPHAGAWGALL 265
+P + + +W +++
Sbjct: 309 GLP-ETDSLSWSSII 322
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/440 (47%), Positives = 296/440 (67%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
++V MI + GD AR +FD+M +R ++WN M++GY+ G ++A+ +F M+
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
D++ N V++VSVL A + LG+L+ G W H+Y E + +++ LG+AL+DMYSKCG +
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
KA+ F + NV TW+++I G A++G +++ F M+QAGVRP++V ++++L C
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
GLVEEGR +F M G+EP +EHYGC+VDL GR+G LDEA + I MP+KP W
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 446
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
ALL ACRM N EMG+ + L+++ + GAYV LSN+YA NW V +R MK K
Sbjct: 447 KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEK 506
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
++K PGCS+I++D +HEF D++HP+ EI ML EIS +L+LAGY T V+ ++
Sbjct: 507 DIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNL 566
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
EEE+KE+ L HSEK+A AFGLIS G PIRIVKNLR+C DCH K+ISKV+ R+I V
Sbjct: 567 EEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITV 626
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RDR RFHHF++G CSC YW
Sbjct: 627 RDRKRFHHFQDGSCSCMDYW 646
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 140/298 (46%), Gaps = 54/298 (18%)
Query: 22 DVVCQTAMISACAKCG----DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE--ALH 75
D + ++ CA D+D A K+F++MP+R+ +WN ++ G+++ + + A+
Sbjct: 54 DTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAIT 113
Query: 76 LFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH--------------------VY 114
LF+ +M V+ N + SVL AC G + +G+ H +Y
Sbjct: 114 LFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMY 173
Query: 115 -----------------IERNRLKMT--------VTLGTALVDMYSKCGNMNKAMDFFWG 149
IE++ + MT + L ++D Y + G+ A F
Sbjct: 174 VMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDK 233
Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209
M++R+V +W ++I G ++NG + ++E+F MK+ +RPN VT VSVL +G +E G
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293
Query: 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
E + GI L+D+Y + G +++A+ V ++P + + W A++N
Sbjct: 294 -EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMING 349
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/468 (46%), Positives = 309/468 (66%), Gaps = 8/468 (1%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA GC+ ++ F + ++ TAM+S +KCG +D A+ +FD+ ++D + W M
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTM 315
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++ Y + +EAL +F M +K + VSM SV+SAC +LG LD+ +W H I N L
Sbjct: 316 ISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGL 375
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ +++ AL++MY+KCG ++ D F M RNV +W+S+I L+M+G +L LF+
Sbjct: 376 ESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFAR 435
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ V PNEVTFV VL GC GLVEEG++ F SM EY I P LEHYGC+VDL+GRA
Sbjct: 436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRAN 495
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
L EAL+VI MP+ + WG+L++ACR++ E+G+ A+++++ELE + GA VL+SN
Sbjct: 496 LLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSN 555
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA + W+ V N+R++M+ K V K G S I+ + + HEF GD+ H + NEI L E
Sbjct: 556 IYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDE 615
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKE-------GVPIR 413
+ +LKLAGYV + V+ D+EEEEK+D + HSEK+A+ FGL++ ++ GV IR
Sbjct: 616 VVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IR 674
Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
IVKNLRVC DCH K++SKV+ REIIVRDR RFH +K G CSC+ YW
Sbjct: 675 IVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 33/281 (11%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D +T + A CG ++ AR +FDEM RD + WN M+ Y + G EA LF M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
+V +E+ + +++SAC G + R + ++ N ++M L TALV MY+ G M+
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 142 KAMDFFWGMKERNVYT-------------------------------WTSVIGGLAMNGA 170
A +FF M RN++ WT++I +
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230
+++L +F M +G++P+ V+ SV+ C +G++++ + S G+E L
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAK-WVHSCIHVNGLESELSINN 383
Query: 231 CLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
L+++Y + G LD DV KMP + + +W +++NA M+
Sbjct: 384 ALINMYAKCGGLDATRDVFEKMPRR-NVVSWSSMINALSMH 423
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/440 (46%), Positives = 296/440 (67%), Gaps = 1/440 (0%)
Query: 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
+ Q +++ A CGDV A K+FD+MPE+D +AWN+++ G+A+ GK EAL L+ M
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215
Query: 83 HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
+K + ++VS+LSAC +GAL G+ HVY+ + L + L+D+Y++CG + +
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275
Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCC 201
A F M ++N +WTS+I GLA+NG G++++ELF M+ G+ P E+TFV +L C
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
G+V+EG E+F MR EY IEP +EH+GC+VDL RAG++ +A + I MPM+P+ W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
LL AC ++ ++++ E A ++++LE + G YVLLSN+YA + W V +R+ M
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
GVKK+PG S++EV VHEF GD++HP+ + I L E++ RL+ GYV + V D+
Sbjct: 456 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 515
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
EEEEKE+ + HSEK+AIAF LIS E PI +VKNLRVC DCH K++SKV+NREI+V
Sbjct: 516 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 575
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RDR+RFHHFK G CSC+ YW
Sbjct: 576 RDRSRFHHFKNGSCSCQDYW 595
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 8/228 (3%)
Query: 42 ARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNEVSMVSVLS 97
A K+F ++ PI WN ++ GYA+ G S A L+ M++ V+ + + ++
Sbjct: 72 AHKVFSKI--EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129
Query: 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
A T + + G H + R+ + + +L+ +Y+ CG++ A F M E+++
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189
Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
W SVI G A NG E++L L++ M G++P+ T VS+L C +G + G+ M
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249
Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
+ G+ L L+DLY R GR++EA + ++M K ++ +W +L+
Sbjct: 250 K-VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLI 295
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/442 (47%), Positives = 301/442 (68%), Gaps = 3/442 (0%)
Query: 23 VVCQTAMISACAKCGD--VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-L 79
V ++ A AK G+ V +ARK+FD++ ++D +++N++++ YAQ G S EA +F L
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
++ V N +++ +VL A +H GAL G+ H + R L+ V +GT+++DMY KCG
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
+ A F MK +NV +WT++I G M+G K+LELF M +GVRPN +TFVSVL
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAA 397
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
C GL EG F++M+ +G+EP LEHYGC+VDL GRAG L +A D+I +M MKP +
Sbjct: 398 CSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSI 457
Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
W +LL ACR++KN E+ E++ +L EL++ N G Y+LLS+IYA++ W V VR IMK
Sbjct: 458 IWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK 517
Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
+G+ K PG S++E++ EVH F GDE HP+ +I L E++R+L AGYV+NT+ V +
Sbjct: 518 NRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCH 577
Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
D++EEEKE TL HSEK+AIAFG+++ G + +VKNLRVC DCH+V K+ISK+ +RE
Sbjct: 578 DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREF 637
Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
+VRD RFHHFK+G CSC YW
Sbjct: 638 VVRDAKRFHHFKDGGCSCGDYW 659
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 140/269 (52%), Gaps = 11/269 (4%)
Query: 12 QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
Q+ F ++ D+ +A+I + CG ++ ARK+FDE+P+R+ ++W +M+ GY G +
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159
Query: 72 EALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
+A+ LF + + + + L+ + +VSV+SAC+ + A H ++ + V+
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219
Query: 126 LGTALVDMYSKC--GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMK 182
+G L+D Y+K G + A F + +++ ++ S++ A +G ++ E+F L+K
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279
Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
V N +T +VL G + G+ D + R G+E + ++D+Y + GR+
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRV 338
Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMY 271
+ A ++M K + +W A++ M+
Sbjct: 339 ETARKAFDRMKNK-NVRSWTAMIAGYGMH 366
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
E DV+ T++I KCG V+ ARK FD M ++ +W AM+AGY G + +AL LF
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
M V+ N ++ VSVL+AC+H G +G RW + R ++ + +VD+ + G
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438
Query: 139 NMNKAMDFFWGMKER-NVYTWTSVIGG 164
+ KA D MK + + W+S++
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAA 465
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 19/200 (9%)
Query: 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112
D +WN+++A A+ G S EAL F M+ + S + AC+ L + G+ H
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
+ + + +AL+ MYS CG + A F + +RN+ +WTS+I G +NG
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNG--- 156
Query: 173 KSLELFSLMKQAGVRPNE---------VTFVSVLRGCCVV---GLVEEGREHFDSMRREY 220
+L+ SL K V N+ + VSV+ C V GL E S +
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTES----IHSFVIKR 212
Query: 221 GIEPWLEHYGCLVDLYGRAG 240
G + + L+D Y + G
Sbjct: 213 GFDRGVSVGNTLLDAYAKGG 232
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
+V++W SVI LA +G ++L FS M++ + P +F ++ C + + G++
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
+G + + L+ +Y G+L++A V +++P K + +W +++ + N
Sbjct: 100 QQA-FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRGYDLNGN 157
Query: 274 T 274
Sbjct: 158 A 158
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/451 (44%), Positives = 297/451 (65%)
Query: 11 CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
+++FD + +V MI+ A+CG + A+ +FD+MP+RDP++W AM+AGY+Q G S
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390
Query: 71 REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
EAL LF M+ +LN S S LS C + AL+ G+ H + + + +G AL
Sbjct: 391 FEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNAL 450
Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
+ MY KCG++ +A D F M +++ +W ++I G + +G GE +L F MK+ G++P++
Sbjct: 451 LLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDD 510
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
T V+VL C GLV++GR++F +M ++YG+ P +HY C+VDL GRAG L++A +++
Sbjct: 511 ATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMK 570
Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310
MP +P A WG LL A R++ NTE+ E A+ K+ +E +N G YVLLSN+YA S W
Sbjct: 571 NMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGD 630
Query: 311 VINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370
V +R M+ KGVKK+PG S IE+ + H F GDE HP +EI L E+ R+K AGY
Sbjct: 631 VGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGY 690
Query: 371 VANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKM 430
V+ T+ V++D+EEEEKE + HSE++A+A+G++ + G PIR++KNLRVC DCH+ K
Sbjct: 691 VSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKY 750
Query: 431 ISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
++++ R II+RD NRFHHFK+G CSC YW
Sbjct: 751 MARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 144/343 (41%), Gaps = 71/343 (20%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
Y G +VF + V MIS + G+ +LARK+FDEMPERD ++WN M+
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133
Query: 62 AGYAQ---CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR--------- 109
GY + GK+RE LF +M DV S ++LS G +D R
Sbjct: 134 KGYVRNRNLGKARE---LFEIMPERDV----CSWNTMLSGYAQNGCVDDARSVFDRMPEK 186
Query: 110 ----WAHV---YIERNRLKMTVTLGTA-----------LVDMYSKCGNMNKAMDFFWGMK 151
W + Y++ ++++ L + L+ + K + +A FF M
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246
Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
R+V +W ++I G A +G +++ +LF V T+ +++ G +VEE RE
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQNRMVEEARE 302
Query: 212 HFDSM--RREYGIEPWLEHY------------------------GCLVDLYGRAGRLDEA 245
FD M R E L Y ++ Y + G++ EA
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362
Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288
++ +KMP K +W A++ Y + A R V++E
Sbjct: 363 KNLFDKMP-KRDPVSWAAMIAG---YSQSGHSFEALRLFVQME 401
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 130/305 (42%), Gaps = 23/305 (7%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
+ D+ IS+ + G + A ++F MP +++N M++GY + G+ A LF
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMYSKCG 138
M D+ VS ++ L + R + ER+ V ++ Y++ G
Sbjct: 121 MPERDL----VSWNVMIKGYVRNRNLGKARELFEIMPERD-----VCSWNTMLSGYAQNG 171
Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
++ A F M E+N +W +++ N E++ LF + + V++ +L
Sbjct: 172 CVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLG 227
Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
G + E R+ FDSM + + ++ Y ++G++DEA + ++ P++
Sbjct: 228 GFVKKKKIVEARQFFDSMNVRDVVS-----WNTIITGYAQSGKIDEARQLFDESPVQ-DV 281
Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
W A+++ Y M E A ++ +N ++ + Y + + + + +M
Sbjct: 282 FTWTAMVSG---YIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVM 338
Query: 319 KAKGV 323
+ V
Sbjct: 339 PCRNV 343
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/442 (45%), Positives = 298/442 (67%), Gaps = 3/442 (0%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
EPD++ ++ + AKCG V A+ +FD+M + I WNAM++GYA+ G +REA+ +FH
Sbjct: 256 EPDLL--ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHE 313
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
M DV+ + +S+ S +SAC +G+L+Q R + Y+ R+ + V + +AL+DM++KCG+
Sbjct: 314 MINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
+ A F +R+V W+++I G ++G +++ L+ M++ GV PN+VTF+ +L
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
C G+V EG F+ M ++ I P +HY C++DL GRAG LD+A +VI MP++P
Sbjct: 434 CNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVT 492
Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
WGALL+AC+ +++ E+GE A+++L ++ N G YV LSN+YA ++ WDRV VR MK
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552
Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
KG+ K GCS +EV + F GD++HPRY EIE + I RLK G+VAN + ++
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612
Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
D+ +EE E+TLC HSE++AIA+GLIS +G P+RI KNLR C +CH TK+ISK+ +REI
Sbjct: 613 DLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREI 672
Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
+VRD NRFHHFK+G CSC YW
Sbjct: 673 VVRDTNRFHHFKDGVCSCGDYW 694
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 140/256 (54%), Gaps = 6/256 (2%)
Query: 13 KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFD--EMPERDPIAWNAMLAGYAQCGKS 70
+VF + DV Q +I+ AKC + AR +F+ +PER ++W A+++ YAQ G+
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 71 REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
EAL +F M+ DVK + V++VSVL+A T L L QGR H + + L++ L +L
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263
Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
MY+KCG + A F MK N+ W ++I G A NG +++++F M VRP+
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
++ S + C VG +E+ R ++ + R +Y + ++ L+D++ + G ++ A V
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGARLVF 381
Query: 250 NKMPMKPHAGAWGALL 265
++ + W A++
Sbjct: 382 DRT-LDRDVVVWSAMI 396
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 6/243 (2%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
T +I A + GD+ AR++FD++P WNA++ GY++ ++AL ++ MQ+ V
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
+ + +L AC+ L L GR+ H + R V + L+ +Y+KC + A
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176
Query: 147 FWG--MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
F G + ER + +WT+++ A NG ++LE+FS M++ V+P+ V VSVL +
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236
Query: 205 LVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
+++GR H ++ IEP L L +Y + G++ A + +KM P+ W A
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNA 293
Query: 264 LLN 266
+++
Sbjct: 294 MIS 296
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Query: 3 AELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
A++G L + +++ + + DV +A+I AKCG V+ AR +FD +RD + W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393
Query: 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
AM+ GY G++REA+ L+ M+ V N+V+ + +L AC H G + +G W + +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453
Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
++ ++D+ + G++++A + M + V W +++
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/437 (46%), Positives = 297/437 (67%), Gaps = 4/437 (0%)
Query: 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
A+I +KCG+++ A +F+ +P +D I+WN ++ GY +EAL LF M
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
N+V+M+S+L AC HLGA+D GRW HVYI++ RLK +L T+L+DMY+KCG++ A
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
F + +++ +W ++I G AM+G + S +LFS M++ G++P+++TFV +L C G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
+++ GR F +M ++Y + P LEHYGC++DL G +G EA ++IN M M+P W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544
Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
L AC+M+ N E+GE + L+++E +N G+YVLLSNIYA + W+ V R ++ KG+K
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604
Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
K+PGCS IE+D VHEF GD+ HPR EI ML E+ L+ AG+V +T+ V+ ++EEE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664
Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
KE L HSEK+AIAFGLIS K G + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 724
Query: 445 NRFHHFKEGKCSCKGYW 461
RFHHF++G CSC YW
Sbjct: 725 TRFHHFRDGVCSCNDYW 741
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 160/284 (56%), Gaps = 3/284 (1%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G L KVFD DVV TA+I A G ++ A+K+FDE+P +D ++WNAM
Sbjct: 178 MYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAM 237
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GYA+ G +EAL LF M +V+ +E +MV+V+SAC G+++ GR H++I+ +
Sbjct: 238 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGF 297
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ + AL+D+YSKCG + A F + ++V +W ++IGG +++L LF
Sbjct: 298 GSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQE 357
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
M ++G PN+VT +S+L C +G ++ GR H +R G+ L+D+Y +
Sbjct: 358 MLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKC 417
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASR 282
G ++ A V N + K +W A++ M+ + +L SR
Sbjct: 418 GDIEAAHQVFNSILHKS-LSSWNAMIFGFAMHGRADASFDLFSR 460
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 33/255 (12%)
Query: 42 ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
A +F + E + + WN M G+A AL L+ M + N + VL +C
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 102 LGALDQGRWAH-----------VYIERNRLKMTVTLG--------------------TAL 130
A +G+ H +Y+ + + M V G TAL
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
+ Y+ G + A F + ++V +W ++I G A G +++LELF M + VRP+E
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
T V+V+ C G +E GR+ ++G L+ L+DLY + G L+ A +
Sbjct: 267 STMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 325
Query: 251 KMPMKPHAGAWGALL 265
++P K +W L+
Sbjct: 326 RLPYK-DVISWNTLI 339
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
Y K G+ + +T++I AKCGD++ A ++F+ + + +WNAM+ G+A G+
Sbjct: 392 YIDKRLKGVTNASSL-RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 450
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
+ + LF M+ ++ ++++ V +LSAC+H G LD GR H++
Sbjct: 451 ADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR--HIF 493
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/450 (45%), Positives = 298/450 (66%), Gaps = 1/450 (0%)
Query: 13 KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
++FD + VV ++++ + G+VD A + F+ MPE++ ++WN +++G Q E
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452
Query: 73 ALHLFHLMQIHD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
A+ +F MQ + V + V+M+S+ SAC HLGALD +W + YIE+N +++ V LGT LV
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512
Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
DM+S+CG+ AM F + R+V WT+ IG +AM G E+++ELF M + G++P+ V
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572
Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
FV L C GLV++G+E F SM + +G+ P HYGC+VDL GRAG L+EA+ +I
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632
Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
MPM+P+ W +LL ACR+ N EM A+ K+ L + G+YVLLSN+YA + W+ +
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692
Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
VR MK KG++K PG S I++ + HEF +GDE+HP IE ML E+S+R G+V
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752
Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
+ + V+ D++E+EK L +HSEK+A+A+GLIS +G IRIVKNLRVC DCH K
Sbjct: 753 PDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFA 812
Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
SKV+NREII+RD NRFH+ ++GKCSC +W
Sbjct: 813 SKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 130/238 (54%), Gaps = 2/238 (0%)
Query: 19 HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF- 77
+ D+ Q +++ A+CG++D ARK+FDEM ER+ ++W +M+ GYA+ +++A+ LF
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224
Query: 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
+++ +V N V+MV V+SAC L L+ G + +I + +++ + +ALVDMY KC
Sbjct: 225 RMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC 284
Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
++ A F N+ ++ G ++L +F+LM +GVRP+ ++ +S +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344
Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
C + + G+ + R G E W L+D+Y + R D A + ++M K
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 135/298 (45%), Gaps = 44/298 (14%)
Query: 3 AELGCLGYCQKVFDGIHEPDVVCQTAMISACA----KCGDVDLARKMFDEMPERDPIAWN 58
A+L L +KV+ I + M+SA KC +D+A+++FDE + N
Sbjct: 247 AKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306
Query: 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
AM + Y + G +REAL +F+LM V+ + +SM+S +S+C+ L + G+ H Y+ RN
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366
Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
+ + AL+DMY KC + A F M + V TW S++ G NG + + E F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426
Query: 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-------------- 224
M + N V++ +++ G L EE E F SM+ + G+
Sbjct: 427 ETMPE----KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGH 482
Query: 225 --------WLEHY-------------GCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
W+ +Y LVD++ R G + A+ + N + + AW
Sbjct: 483 LGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR-DVSAW 539
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 6/231 (2%)
Query: 20 EPDVVCQTAMISACAKCG---DVDLARKMFDEMPERDP-IAWNAMLAGYAQCGKSREALH 75
+ DV T +++ + G + A+++F+ +N+++ GYA G EA+
Sbjct: 61 DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAIL 120
Query: 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
LF M + ++ + LSAC A G H I + + + +LV Y+
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA 180
Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL-FSLMKQAGVRPNEVTFV 194
+CG ++ A F M ERNV +WTS+I G A + +++L F +++ V PN VT V
Sbjct: 181 ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMV 240
Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
V+ C + +E G + + + R GIE LVD+Y + +D A
Sbjct: 241 CVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/452 (45%), Positives = 297/452 (65%), Gaps = 3/452 (0%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+C + +G+ E DV ++A+I AK G+ + A +FDEM D I WN+++ G+AQ +
Sbjct: 182 HCGIIKEGL-ESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
S AL LF M+ + ++ SVL ACT L L+ G AHV+I + + L A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNA 298
Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
LVDMY KCG++ A+ F MKER+V TW+++I GLA NG +++L+LF MK +G +PN
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358
Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
+T V VL C GL+E+G +F SM++ YGI+P EHYGC++DL G+AG+LD+A+ ++
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418
Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
N+M +P A W LL ACR+ +N + E A++K++ L+ ++ G Y LLSNIYA S+ WD
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478
Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
V +R M+ +G+KK PGCS IEV++++H F GD +HP+ E+ L ++ RL G
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIG 538
Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
YV TN V+ D+E E+ ED+L HSEK+A+AFGL++L IRI KNLR+C DCH K
Sbjct: 539 YVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCK 598
Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
+ SK+ R I++RD R+HHF++GKCSC YW
Sbjct: 599 LASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 130/242 (53%), Gaps = 6/242 (2%)
Query: 11 CQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS 70
C+ ++ H P + +I+ K ++ A ++FD+MP+R+ I+W M++ Y++C
Sbjct: 84 CRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 143
Query: 71 REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
++AL L LM +V+ N + SVL +C + + R H I + L+ V + +AL
Sbjct: 144 QKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSAL 200
Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
+D+++K G A+ F M + W S+IGG A N + +LELF MK+AG +
Sbjct: 201 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 260
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
T SVLR C + L+E G + + + Y + L + LVD+Y + G L++AL V N
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVK-YDQDLILNN--ALVDMYCKCGSLEDALRVFN 317
Query: 251 KM 252
+M
Sbjct: 318 QM 319
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWA--HVYIERNRLKMTVTLGTALVDMYSKC 137
+Q H + + + ++ C A+ +G H+Y +R M L L++MY K
Sbjct: 52 LQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMF--LVNVLINMYVKF 109
Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
+N A F M +RNV +WT++I + +K+LEL LM + VRPN T+ SVL
Sbjct: 110 NLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVL 169
Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
R C G+ + H ++ G+E + L+D++ + G ++AL V ++M +
Sbjct: 170 RSCN--GMSDVRMLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGD 224
Query: 258 AGAWGALL 265
A W +++
Sbjct: 225 AIVWNSII 232
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 41/170 (24%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G L +VF+ + E DV+ + MIS
Sbjct: 302 MYCKCGSLEDALRVFNQMKERDVITWSTMIS----------------------------- 332
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
G AQ G S+EAL LF M+ K N +++V VL AC+H G L+ G W Y R+
Sbjct: 333 --GLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG-W---YYFRSMK 386
Query: 121 KMTVTLGT-----ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
K+ ++D+ K G ++ A+ M+ E + TW +++G
Sbjct: 387 KLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/441 (45%), Positives = 289/441 (65%), Gaps = 1/441 (0%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D+ A++ AK G VD AR +F+ +P D I+WN +++GYAQ G + EA+ ++++M+
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 82 IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
++ N+ + VSVL AC+ GAL QG H + +N L + V + T+L DMY KCG +
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
A+ F+ + N W ++I +G GEK++ LF M GV+P+ +TFV++L C
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562
Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
GLV+EG+ F+ M+ +YGI P L+HYGC+VD+YGRAG+L+ AL I M ++P A
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622
Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
WGALL+ACR++ N ++G++AS L E+E ++ G +VLLSN+YA + W+ V +R I
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682
Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
KG++K PG S +EVD +V F+ G++THP Y E+ L + +LK+ GYV + V+ D
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742
Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
+E++EKE L HSE++AIAF LI+ IRI KNLRVC DCH VTK ISK+ REII
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802
Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
VRD NRFHHFK G CSC YW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
DV ++I ++ V AR +FDEMP RD +WNAM++GY Q G ++EAL L + ++
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
D V++VS+LSACT G ++G H Y ++ L+ + + L+D+Y++ G +
Sbjct: 244 AMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
F M R++ +W S+I +N +++ LF M+ + ++P+ +T +S+
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359
Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
+G + R ++R+ + +E + +V +Y + G +D A V N +P
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLED-ITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 149/282 (52%), Gaps = 5/282 (1%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
E ++ +I A+ G + +K+FD M RD I+WN+++ Y + A+ LF
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM-TVTLGTALVDMYSKCG 138
M++ ++ + ++++S+ S + LG + R + R + +T+G A+V MY+K G
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 398
Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVL 197
++ A F + +V +W ++I G A NG +++E++++M++ G + N+ T+VSVL
Sbjct: 399 LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVL 458
Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
C G + +G + + + G+ + L D+YG+ GRL++AL + ++P + +
Sbjct: 459 PACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVN 516
Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLL 298
+ W L+ + + E + +++++ K +H +V L
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 558
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 13/247 (5%)
Query: 24 VCQTA-MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
VC +A +++ G+V LAR FD + RD AWN M++GY + G S E + F L +
Sbjct: 86 VCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 145
Query: 83 HD-VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
+ + + SVL AC + G H + V + +L+ +YS+ +
Sbjct: 146 SSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 202
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGC 200
A F M R++ +W ++I G +G +++L L G+R + VT VS+L C
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSAC 257
Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
G G S ++G+E L L+DLY GRL + V ++M ++ +
Sbjct: 258 TEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLI-S 315
Query: 261 WGALLNA 267
W +++ A
Sbjct: 316 WNSIIKA 322
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
++ CT+L + H + ++ V + LV++Y GN+ A F ++ R
Sbjct: 59 TLFRYCTNL---QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115
Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSL-MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
+VY W +I G G + + FSL M +G+ P+ TF SVL+ C V ++ + H
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV--IDGNKIH 173
Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
+++ + + ++ L+ LY R + A + ++MP++ G+W A+++
Sbjct: 174 CLALKFGFMWDVYVA--ASLIHLYSRYKAVGNARILFDEMPVRD-MGSWNAMISG 225
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/453 (43%), Positives = 286/453 (63%), Gaps = 3/453 (0%)
Query: 9 GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
GYC K H TA+ + +K +++ ARK+FDE PE+ +WNAM++GY Q G
Sbjct: 343 GYCLKSNFLSHAS---VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399
Query: 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
+ +A+ LF MQ + N V++ +LSAC LGAL G+W H + + ++ + T
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459
Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
AL+ MY+KCG++ +A F M ++N TW ++I G ++G G+++L +F M +G+ P
Sbjct: 460 ALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITP 519
Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
VTF+ VL C GLV+EG E F+SM YG EP ++HY C+VD+ GRAG L AL
Sbjct: 520 TPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQF 579
Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
I M ++P + W LL ACR++K+T + S KL EL+ N G +VLLSNI++ +N+
Sbjct: 580 IEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNY 639
Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368
+ VRQ K + + K PG ++IE+ H F +GD++HP+ EI L ++ +++ A
Sbjct: 640 PQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREA 699
Query: 369 GYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
GY T ++D+EEEE+E + HSE++AIAFGLI+ + G IRI+KNLRVC DCH VT
Sbjct: 700 GYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVT 759
Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
K+ISK+ R I+VRD NRFHHFK+G CSC YW
Sbjct: 760 KLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 5/240 (2%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
T IS +KCG + + +F E + D +A+NAM+ GY G++ +L LF + + +
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
L ++VS++ HL + H Y ++ ++ TAL +YSK + A
Sbjct: 320 LRSSTLVSLVPVSGHLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
F E+++ +W ++I G NG E ++ LF M+++ PN VT +L C +G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGAL 436
Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
G+ D + R E + L+ +Y + G + EA + + M K W +++
Sbjct: 437 SLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMIS 494
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 126/303 (41%), Gaps = 42/303 (13%)
Query: 12 QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
Q V DG + +++ + ++ K V+ ARK+FD MPE+D I WN M++GY +
Sbjct: 144 QAVVDGC-DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYV 202
Query: 72 EALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
E++ +F L+ +L+ +++ +L A L L G H + + T
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262
Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
+ +YSKCG + F ++ ++ + ++I G NG E SL LF + +G R
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322
Query: 191 VTFVSV------------LRGCCV--------------------VGLVEEGREHFDSMRR 218
T VS+ + G C+ + +E R+ FD
Sbjct: 323 STLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDE--- 379
Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---MKPHAGAWGALLNACRMYKNTE 275
E L + ++ Y + G ++A+ + +M P+ +L+AC
Sbjct: 380 --SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALS 437
Query: 276 MGE 278
+G+
Sbjct: 438 LGK 440
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 110/270 (40%), Gaps = 5/270 (1%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+ Q + G D+ T + + G + AR +F + D +N ++ G++
Sbjct: 40 HAQIILHGFRN-DISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNES 98
Query: 70 SREALHLF-HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
+L +F HL + D+K N + +SA + GR H + + LG+
Sbjct: 99 PHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGS 158
Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF-SLMKQAGVR 187
+V MY K + A F M E++ W ++I G N +S+++F L+ ++ R
Sbjct: 159 NIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTR 218
Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
+ T + +L + + G + S+ + G + LY + G++
Sbjct: 219 LDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA 277
Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMG 277
+ + KP A+ A+++ TE+
Sbjct: 278 LFREF-RKPDIVAYNAMIHGYTSNGETELS 306
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/445 (44%), Positives = 289/445 (64%), Gaps = 2/445 (0%)
Query: 19 HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
++ + ++++ AK G + AR++F+ +PERD ++ A++AGYAQ G EAL +FH
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243
Query: 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
+ + N V+ S+L+A + L LD G+ AH ++ R L L +L+DMYSKCG
Sbjct: 244 RLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 303
Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRPNEVTFVSVL 197
N++ A F M ER +W +++ G + +G G + LELF LM+ + V+P+ VT ++VL
Sbjct: 304 NLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 363
Query: 198 RGCCVVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256
GC + + G FD M EYG +P EHYGC+VD+ GRAGR+DEA + I +MP KP
Sbjct: 364 SGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKP 423
Query: 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316
AG G+LL ACR++ + ++GE R+L+E+E +N G YV+LSN+YA + W V NVR
Sbjct: 424 TAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRA 483
Query: 317 IMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376
+M K V K PG S I+ ++ +H F A D THPR E+ + EIS ++K AGYV + +
Sbjct: 484 MMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSC 543
Query: 377 VMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFN 436
V+YD++EE+KE L HSEK+A+ FGLI+ EG+PIR+ KNLR+C DCH+ K+ SKVF
Sbjct: 544 VLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFE 603
Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
RE+ +RD+NRFH +G CSC YW
Sbjct: 604 REVSLRDKNRFHQIVDGICSCGDYW 628
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 139/246 (56%), Gaps = 4/246 (1%)
Query: 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
P +T ++ KC ++ ARK+ DEMPE++ ++W AM++ Y+Q G S EAL +F M
Sbjct: 85 PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEM 144
Query: 81 QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
D K NE + +VL++C L G+ H I + + +G++L+DMY+K G +
Sbjct: 145 MRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQI 204
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
+A + F + ER+V + T++I G A G E++LE+F + G+ PN VT+ S+L
Sbjct: 205 KEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTAL 264
Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
+ L++ G++ H +RRE L++ L+D+Y + G L A + + MP + A
Sbjct: 265 SGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYARRLFDNMPERT-AI 321
Query: 260 AWGALL 265
+W A+L
Sbjct: 322 SWNAML 327
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 1/205 (0%)
Query: 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
++L+AC AL G+ H ++ + R L T L+ Y KC + A M E+
Sbjct: 57 ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116
Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
NV +WT++I + G ++L +F+ M ++ +PNE TF +VL C + G++
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-I 175
Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
+ ++ + + L+D+Y +AG++ EA ++ +P + + ++ +
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLD 235
Query: 274 TEMGELASRKLVELETKNHGAYVLL 298
E E+ R E + N+ Y L
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASL 260
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/465 (41%), Positives = 301/465 (64%), Gaps = 4/465 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + + +KVFD + E DV+ T +I+A A+ G+++ A ++F+ +P +D +AW AM
Sbjct: 193 MYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAM 252
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+ G+AQ K +EAL F M+ ++ +EV++ +SAC LGA A +++
Sbjct: 253 VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGY 312
Query: 121 KMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178
+ V +G+AL+DMYSKCGN+ +A++ F M +NV+T++S+I GLA +G +++L LF
Sbjct: 313 SPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLF 372
Query: 179 SLM-KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
M Q ++PN VTFV L C GLV++GR+ FDSM + +G++P +HY C+VDL G
Sbjct: 373 HYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLG 432
Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
R GRL EAL++I M ++PH G WGALL ACR++ N E+ E+A+ L ELE G Y+L
Sbjct: 433 RTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYIL 492
Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS-VIEVDREVHEFFAGDETHPRYNEIEV 356
LSN+YA + +W V+ VR+++K KG+KK P S V++ + ++H+FF G+ HP N+I+
Sbjct: 493 LSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQD 552
Query: 357 MLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVK 416
L E+ RL + GY + + V YD+ + K L +H+EK+A+AF L++ I I+K
Sbjct: 553 KLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMK 612
Query: 417 NLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
NLR+C DCH ++ S+V + II+RD RFHHF+ G CSC +W
Sbjct: 613 NLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 36/248 (14%)
Query: 42 ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
AR++ + + R+P W A++ GYA GK EA+ ++ M+ ++ + ++L AC
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC------------------------ 137
+ L+ GR H R R V +G ++DMY KC
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 138 -------GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
GNM A + F + +++ WT+++ G A N +++LE F M+++G+R +E
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY---GCLVDLYGRAGRLDEALD 247
VT + C +G + + + ++ G P +H L+D+Y + G ++EA++
Sbjct: 282 VTVAGYISACAQLG-ASKYADRAVQIAQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAVN 339
Query: 248 VINKMPMK 255
V M K
Sbjct: 340 VFMSMNNK 347
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/463 (44%), Positives = 290/463 (62%), Gaps = 7/463 (1%)
Query: 5 LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
LG L K+F D + T ++ + C + A K+FDE+P+RD ++WN + + Y
Sbjct: 130 LGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCY 189
Query: 65 AQCGKSREALHLFHLMQIHDV----KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+ ++R+ L LF M+ +DV K + V+ + L AC +LGALD G+ H +I+ N L
Sbjct: 190 LRNKRTRDVLVLFDKMK-NDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL 248
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ L LV MYS+CG+M+KA F+GM+ERNV +WT++I GLAMNG G++++E F+
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNE 308
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR-EYGIEPWLEHYGCLVDLYGRA 239
M + G+ P E T +L C GLV EG FD MR E+ I+P L HYGC+VDL GRA
Sbjct: 309 MLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRA 368
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
LD+A +I M MKP + W LL ACR++ + E+GE L+EL+ + G YVLL
Sbjct: 369 RLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLL 428
Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
N Y+ W++V +R +MK K + PGCS IE+ VHEF D +HPR EI ML
Sbjct: 429 NTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLA 488
Query: 360 EISRRLKLAGYVANTNPVMYDIE-EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
EI+++LK+AGYVA ++++E EEEK L HSEK+AIAFG++ G IR+ KNL
Sbjct: 489 EINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNL 548
Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
R C DCH+ K +S V++R +IVRDR+RFHHFK G CSC +W
Sbjct: 549 RTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 6/237 (2%)
Query: 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVL 96
D++ + ++F + N M+ ++ E LF L + + N +S L
Sbjct: 61 DINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFAL 120
Query: 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY 156
C G L G H I + L T L+D+YS C N A F + +R+
Sbjct: 121 KCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTV 180
Query: 157 TWTSVIGGLAMNGAGEKSLELFSLMKQ---AGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
+W + N L LF MK V+P+ VT + L+ C +G ++ G++
Sbjct: 181 SWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVH 240
Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM 270
D + E G+ L LV +Y R G +D+A V M + + +W AL++ M
Sbjct: 241 DFI-DENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRER-NVVSWTALISGLAM 295
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 34/175 (19%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY+ G + +VF G+ E +VV TA+IS
Sbjct: 261 MYSRCGSMDKAYQVFYGMRERNVVSWTALIS----------------------------- 291
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
G A G +EA+ F+ M + E ++ +LSAC+H G + +G +
Sbjct: 292 --GLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEF 349
Query: 121 KMTVTLG--TALVDMYSKCGNMNKAMDFFWGMKERNVYT-WTSVIGGLAMNGAGE 172
K+ L +VD+ + ++KA M+ + T W +++G ++G E
Sbjct: 350 KIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVE 404
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/442 (43%), Positives = 283/442 (64%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
+ + +T +++ AKCG ++ AR +FD M E+D + W+ M+ GYA +E + LF
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
M ++K ++ S+V LS+C LGALD G W I+R+ + + AL+DMY+KCG
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGA 363
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
M + + F MKE+++ + I GLA NG + S +F ++ G+ P+ TF+ +L G
Sbjct: 364 MARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCG 423
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
C GL+++G F+++ Y ++ +EHYGC+VDL+GRAG LD+A +I MPM+P+A
Sbjct: 424 CVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAI 483
Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
WGALL+ CR+ K+T++ E ++L+ LE N G YV LSNIY+ WD VR +M
Sbjct: 484 VWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMN 543
Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
KG+KK+PG S IE++ +VHEF A D++HP ++I L ++ ++L G+V T V +
Sbjct: 544 KKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFF 603
Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
D+EEEEKE L HSEK+A+A GLIS G IR+VKNLRVC DCH+V K+ISK+ REI
Sbjct: 604 DVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREI 663
Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
+VRD NRFH F G CSC YW
Sbjct: 664 VVRDNNRFHCFTNGSCSCNDYW 685
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 3/235 (1%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
DV T+++S + G ++ A K+FDE+P+R + W A+ +GY G+ REA+ LF M
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
VK + +V VLSAC H+G LD G W Y+E ++ + T LV++Y+KCG M
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
KA F M E+++ TW+++I G A N ++ +ELF M Q ++P++ + V L C
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324
Query: 202 VVGLVEEGREHFDSM-RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
+G ++ G + R E+ ++ + L+D+Y + G + +V +M K
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMAN--ALIDMYAKCGAMARGFEVFKEMKEK 377
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 1/211 (0%)
Query: 45 MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104
+F + +N+++ G+ E L LF ++ H + L+ + VL ACT +
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164
G H + + V T+L+ +YS G +N A F + +R+V TWT++ G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224
+G ++++LF M + GV+P+ V VL C VG ++ G E E ++
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG-EWIVKYMEEMEMQK 245
Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
LV+LY + G++++A V + M K
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDSMVEK 276
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 102/267 (38%), Gaps = 74/267 (27%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA+ G + +VF + E D+V A IS AK G V L+ +F + +
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEK--------- 407
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
G + G + + +L C H G + G R+ +
Sbjct: 408 -LGISPDGS---------------------TFLGLLCGCVHAGLIQDGLRFFNAISCVYA 445
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
LK TV +VD++ + G ++ A +
Sbjct: 446 LKRTVEHYGCMVDLWGRAGMLDDA----------------------------------YR 471
Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGR 238
L+ +RPN + + ++L GC LV++ + ++ +EPW +Y L ++Y
Sbjct: 472 LICDMPMRPNAIVWGALLSGC---RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSV 528
Query: 239 AGRLDEAL---DVINKMPMKPHAG-AW 261
GR DEA D++NK MK G +W
Sbjct: 529 GGRWDEAAEVRDMMNKKGMKKIPGYSW 555
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213
N++ + S+I G N ++L+LF +++ G+ + TF VL+ C + G +
Sbjct: 75 NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID-L 133
Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
S+ + G + L+ +Y +GRL++A + +++P + W AL +
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS-VVTWTALFSGYTTSGR 192
Query: 274 TEMGELASRKLVELETKNHGAYVL 297
+K+VE+ K +++
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIV 216
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/467 (45%), Positives = 294/467 (62%), Gaps = 17/467 (3%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+CQ V G DV +I CG +DLARK+FDEMPER ++WN+M+ + G+
Sbjct: 174 HCQIVKHGFGG-DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 232
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN---RLKMTVTL 126
AL LF MQ + + +M SVLSAC LG+L G WAH ++ R + M V +
Sbjct: 233 YDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLV 291
Query: 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQA 184
+L++MY KCG++ A F GM++R++ +W ++I G A +G E+++ F M K+
Sbjct: 292 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 351
Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
VRPN VTFV +L C G V +GR++FD M R+Y IEP LEHYGC+VDL RAG + E
Sbjct: 352 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITE 411
Query: 245 ALDVINKMPMKPHAGAWGALLNAC-RMYKNTEMGELASRKLVELETKNH-------GAYV 296
A+D++ MPMKP A W +LL+AC + + E+ E +R ++ + N GAYV
Sbjct: 412 AIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYV 471
Query: 297 LLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEV 356
LLS +YA + W+ V VR++M G++K PGCS IE++ HEFFAGD +HP+ +I
Sbjct: 472 LLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQ 531
Query: 357 MLGEISRRLKLAGYVANTN--PVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRI 414
L I RL+ GY+ + + P++ + KE +L HSE++AIAFGLI+L PIRI
Sbjct: 532 QLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRI 591
Query: 415 VKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
KNLRVC DCH+VTK+ISKVFN EIIVRDR RFHHFK+G CSC YW
Sbjct: 592 FKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 6/233 (2%)
Query: 37 GDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFH-LMQIHDVKLNEVSMVS 94
DV+ A ++FD + WN ++ A + EA L+ +++ + ++ +
Sbjct: 97 SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 156
Query: 95 VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
VL AC ++ +G+ H I ++ V + L+ +Y CG ++ A F M ER+
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214
+ +W S+I L G + +L+LF M Q P+ T SVL C +G + G
Sbjct: 217 LVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHA 275
Query: 215 SMRREYGIEPWLEHY--GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
+ R+ ++ ++ L+++Y + G L A V M K +W A++
Sbjct: 276 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM-QKRDLASWNAMI 327
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/441 (45%), Positives = 285/441 (64%), Gaps = 2/441 (0%)
Query: 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM-- 80
V T ++ A+ G VD A +F MP R+ ++W+AM+A YA+ GK+ EAL F M
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 81 QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
+ D N V+MVSVL AC L AL+QG+ H YI R L + + +ALV MY +CG +
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
F M +R+V +W S+I ++G G+K++++F M G P VTFVSVL C
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396
Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
GLVEEG+ F++M R++GI+P +EHY C+VDL GRA RLDEA ++ M +P
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456
Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
WG+LL +CR++ N E+ E ASR+L LE KN G YVLL++IYAE++ WD V V+++++
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEH 516
Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
+G++KLPG +EV R+++ F + DE +P +I L +++ +K GY+ T V+Y+
Sbjct: 517 RGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576
Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
+E EEKE + HSEK+A+AFGLI+ +G PIRI KNLR+C DCH TK ISK +EI+
Sbjct: 577 LETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEIL 636
Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
VRD NRFH FK G CSC YW
Sbjct: 637 VRDVNRFHRFKNGVCSCGDYW 657
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 10/261 (3%)
Query: 14 VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
+ D + D T +I + G VD ARK+FD+ +R WNA+ G E
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 74 LHLFHLMQIHDVKLNEVSMVSVLSACT----HLGALDQGRWAHVYIERNRLKMTVTLGTA 129
L L+ M V+ + + VL AC + L +G+ H ++ R V + T
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222
Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM--KQAGVR 187
LVDMY++ G ++ A F GM RNV +W+++I A NG ++L F M +
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282
Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
PN VT VSVL+ C + +E+G+ H +RR G++ L LV +YGR G+L+
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRR--GLDSILPVISALVTMYGRCGKLEVGQ 340
Query: 247 DVINKMPMKPHAGAWGALLNA 267
V ++M + +W +L+++
Sbjct: 341 RVFDRMHDR-DVVSWNSLISS 360
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 13/242 (5%)
Query: 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114
I+ N ++ + GK ++A+ + + ++ + ++ C H +L H +
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLS----QESSPSQQTYELLILCCGHRSSLSDALRVHRH 102
Query: 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174
I N L T L+ MYS G+++ A F ++R +Y W ++ L + G GE+
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
L L+ M + GV + T+ VL+ C C V + +G+E H RR Y ++
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYI--M 220
Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
LVD+Y R G +D A V MP++ + +W A++ AC L + + + ET
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMI-ACYAKNGKAFEALRTFREMMRET 278
Query: 290 KN 291
K+
Sbjct: 279 KD 280
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/442 (43%), Positives = 290/442 (65%), Gaps = 5/442 (1%)
Query: 24 VCQTAMISACAKCGDVDLARKMFDEMPER----DPIAWNAMLAGYAQCGKSREALHLFHL 79
VC A I+ ++ G VD A +MF+ E+ + ++W +++AG AQ GK EAL LF
Sbjct: 320 VC-NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFRE 378
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
MQ+ VK N V++ S+L AC ++ AL GR H + R L V +G+AL+DMY+KCG
Sbjct: 379 MQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGR 438
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
+N + F M +N+ W S++ G +M+G ++ + +F + + ++P+ ++F S+L
Sbjct: 439 INLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
C VGL +EG ++F M EYGI+P LEHY C+V+L GRAG+L EA D+I +MP +P +
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSC 558
Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
WGALLN+CR+ N ++ E+A+ KL LE +N G YVLLSNIYA W V ++R M+
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKME 618
Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
+ G+KK PGCS I+V V+ AGD++HP+ ++I + EIS+ ++ +G+ N + ++
Sbjct: 619 SLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALH 678
Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
D+EE+E+E L HSEK+A+ FGL++ +G P++++KNLR+C DCH V K IS REI
Sbjct: 679 DVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREI 738
Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
+RD NRFHHFK+G CSC +W
Sbjct: 739 FIRDTNRFHHFKDGICSCGDFW 760
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 47/313 (15%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIA 56
MY G +G +KVFD + + DVV +A++ A A+ G ++ ++ EM E + ++
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219
Query: 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVY 114
WN +L+G+ + G +EA+ +F +IH + ++V++ SVL + L+ GR H Y
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQ--KIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277
Query: 115 IERNRLKMTVTLGTALVDMYSKCGN-------------------------------MNKA 143
+ + L + +A++DMY K G+ ++KA
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 144 MDFFWGMKER----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
++ F KE+ NV +WTS+I G A NG ++LELF M+ AGV+PN VT S+L
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHA 258
C + + GR R + ++ H G L+D+Y + GR++ + V N MP K +
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNV--HVGSALIDMYAKCGRINLSQIVFNMMPTK-NL 454
Query: 259 GAWGALLNACRMY 271
W +L+N M+
Sbjct: 455 VCWNSLMNGFSMH 467
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
D DL + +P+ ++++++ + +++ +F M H + + + ++
Sbjct: 68 DADL---VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFK 124
Query: 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
C L A G+ H + L M + ++ MY +CG M A F M +++V T
Sbjct: 125 VCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVT 184
Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
++++ A G E+ + + S M+ +G+ N V++ +L G
Sbjct: 185 CSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSG 226
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
AH I ++ + + L+ YS N A + + +Y+++S+I L
Sbjct: 37 AHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96
Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
+S+ +FS M G+ P+ ++ + C + + G++ H S ++ +++
Sbjct: 97 FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ-- 154
Query: 230 GCLVDLYGRAGRLDEALDVINKMPMK 255
G + +Y R GR+ +A V ++M K
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDK 180
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/494 (42%), Positives = 302/494 (61%), Gaps = 33/494 (6%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISAC--------------------------- 33
MY GC+ + +KVFD +H+P++V A+I+AC
Sbjct: 150 MYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVM 209
Query: 34 ----AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
K G+++ A+++F EMP RD ++W+ M+ G A G E+ F +Q + NE
Sbjct: 210 LAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNE 269
Query: 90 VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149
VS+ VLSAC+ G+ + G+ H ++E+ V++ AL+DMYS+CGN+ A F G
Sbjct: 270 VSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 329
Query: 150 MKE-RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
M+E R + +WTS+I GLAM+G GE+++ LF+ M GV P+ ++F+S+L C GL+EE
Sbjct: 330 MQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEE 389
Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268
G ++F M+R Y IEP +EHYGC+VDLYGR+G+L +A D I +MP+ P A W LL AC
Sbjct: 390 GEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGAC 449
Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328
+ N E+ E ++L EL+ N G VLLSN YA + W V ++R+ M + +KK
Sbjct: 450 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTA 509
Query: 329 CSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK-LAGYVANTNPVMYDIEEEEKE 387
S++EV + +++F AG++ E L EI RLK AGY +YD+EEEEKE
Sbjct: 510 WSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKE 569
Query: 388 DTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRF 447
D + KHSEK+A+AF L L +G IRIVKNLR+C DCH V K+ SKV+ EI+VRDRNRF
Sbjct: 570 DQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRF 629
Query: 448 HHFKEGKCSCKGYW 461
H FK+G CSC+ YW
Sbjct: 630 HSFKDGSCSCRDYW 643
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 67/309 (21%)
Query: 42 ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF-HLMQIHDVKLNEVSMVSVLSACT 100
AR++ PE D +N ++ GY++ + ++ +F +M+ V + S V+ A
Sbjct: 58 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 117
Query: 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTS 160
+ +L G H ++ L+ + +GT L+ MY CG + A F M + N+ W +
Sbjct: 118 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 177
Query: 161 VI-------------------------------GGLAMNGAGEKSLELFSLM-------- 181
VI G G E + +FS M
Sbjct: 178 VITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSW 237
Query: 182 -----------------------KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218
++AG+ PNEV+ VL C G E G+
Sbjct: 238 STMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKI-LHGFVE 296
Query: 219 EYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
+ G + L+D+Y R G + A V M K +W +++ M+ GE
Sbjct: 297 KAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GE 353
Query: 279 LASRKLVEL 287
A R E+
Sbjct: 354 EAVRLFNEM 362
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/452 (43%), Positives = 288/452 (63%), Gaps = 12/452 (2%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D Q ++ ++ G +D+A ++F +M +RD + WN M+ GY +AL L H MQ
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 498
Query: 82 IHD-----------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130
+ +K N ++++++L +C L AL +G+ H Y +N L V +G+AL
Sbjct: 499 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 558
Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
VDMY+KCG + + F + ++NV TW +I M+G G+++++L +M GV+PNE
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
VTF+SV C G+V+EG F M+ +YG+EP +HY C+VDL GRAGR+ EA ++N
Sbjct: 619 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN 678
Query: 251 KMPMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
MP + AGAW +LL A R++ N E+GE+A++ L++LE YVLL+NIY+ + WD
Sbjct: 679 MMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWD 738
Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
+ VR+ MK +GV+K PGCS IE EVH+F AGD +HP+ ++ L + R++ G
Sbjct: 739 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 798
Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
YV +T+ V++++EE+EKE LC HSEK+AIAFG+++ G IR+ KNLRVC DCH TK
Sbjct: 799 YVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 858
Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
ISK+ +REII+RD RFH FK G CSC YW
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
+A++ C V R++FD M +R WNAM+AGY+Q +EAL LF M+
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401
Query: 87 L-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
L N +M V+ AC GA + H ++ + L + L+DMYS+ G ++ AM
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461
Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-----------QAGVRPNEVTFV 194
F M++R++ TW ++I G + E +L L M+ + ++PN +T +
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521
Query: 195 SVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
++L C + + +G+E H +++ + + LVD+Y + G L + V +++P
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRKVFDQIP 579
Query: 254 MKPHAGAWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312
K + W ++ A M+ N E +L +V+ N ++ + + S D +
Sbjct: 580 QK-NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638
Query: 313 NVRQIMK 319
+ +MK
Sbjct: 639 RIFYVMK 645
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 4/265 (1%)
Query: 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
+++ K G + ++ + RD + WN +L+ Q + EAL M + V+
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDF 146
+E ++ SVL AC+HL L G+ H Y +N L +G+ALVDMY C +
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPNEVTFVSVLRGCCVVGL 205
F GM +R + W ++I G + N +++L LF M++ AG+ N T V+ C G
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Query: 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
+E + G++ L+D+Y R G++D A+ + KM + W ++
Sbjct: 421 FSR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV-TWNTMI 478
Query: 266 NACRMYKNTEMGELASRKLVELETK 290
++ E L K+ LE K
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERK 503
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 5/247 (2%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
V +++ KCGD K+FD + ER+ ++WN++++ K AL F M
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191
Query: 82 IHDVKLNEVSMVSVLSACTHLG---ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
+V+ + ++VSV++AC++L L G+ H Y R + + T LV MY K G
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLG 250
Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
+ + R++ TW +V+ L N ++LE M GV P+E T SVL
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310
Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
C + ++ G+E + ++ LVD+Y ++ V + M
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKI 369
Query: 259 GAWGALL 265
G W A++
Sbjct: 370 GLWNAMI 376
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 6/196 (3%)
Query: 51 ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
R P W +L + REA+ + M + +K + + ++L A L ++ G+
Sbjct: 59 SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQ 118
Query: 111 AHVYIERNRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNG 169
H ++ + + +VT+ LV++Y KCG+ F + ERN +W S+I L
Sbjct: 119 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 178
Query: 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE---EGREHFDSMRREYGIEPWL 226
E +LE F M V P+ T VSV+ C + + E G++ R+ + ++
Sbjct: 179 KWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFI 238
Query: 227 EHYGCLVDLYGRAGRL 242
LV +YG+ G+L
Sbjct: 239 --INTLVAMYGKLGKL 252
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 49/240 (20%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA+ GCL +KVFD ++P+++ I WN +
Sbjct: 561 MYAKCGCLQMSRKVFD-------------------------------QIPQKNVITWNVI 589
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
+ Y G +EA+ L +M + VK NEV+ +SV +AC+H G +D+G R +V
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY---TWTSVIGGLAMNGAGEKSLE 176
++ + +VD+ + G + +A M R+ W+S++G ++ +LE
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLM-NMMPRDFNKAGAWSSLLGASRIH----NNLE 704
Query: 177 LFSLMKQAGVR--PNEVTFVSVLRGC-CVVGLVEEGREHFDSMRREYGI--EP---WLEH 228
+ + Q ++ PN + +L GL ++ E +M +E G+ EP W+EH
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNM-KEQGVRKEPGCSWIEH 763
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/453 (42%), Positives = 299/453 (66%), Gaps = 2/453 (0%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+C + G+ + VC T +I+ +C DVD AR +FD + E + +NAM+ GYA+ +
Sbjct: 152 HCLSMKLGLDDNVYVCPT-LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNR 210
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
EAL LF MQ +K NE++++SVLS+C LG+LD G+W H Y +++ V + TA
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTA 270
Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
L+DM++KCG+++ A+ F M+ ++ W+++I A +G EKS+ +F M+ V+P+
Sbjct: 271 LIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPD 330
Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
E+TF+ +L C G VEEGR++F M ++GI P ++HYG +VDL RAG L++A + I
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFI 390
Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
+K+P+ P W LL AC + N ++ E S ++ EL+ + G YV+LSN+YA +K W+
Sbjct: 391 DKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWE 450
Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
V ++R++MK + K+PGCS IEV+ VHEFF+GD ++ L E+ + LKL+G
Sbjct: 451 YVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSG 510
Query: 370 YVANTNPVMY-DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVT 428
YV +T+ V++ ++ ++EKE TL HSEK+AI FGL++ G IR+VKNLRVC DCH+
Sbjct: 511 YVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAA 570
Query: 429 KMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
K+IS +F R++++RD RFHHF++GKCSC +W
Sbjct: 571 KLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 5/252 (1%)
Query: 19 HEPDVVCQTAMISACAKC---GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH 75
H DV +I+ C + + AR +F+ M E D + +N+M GY++ E
Sbjct: 56 HIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFS 115
Query: 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135
LF + + + + S+L AC AL++GR H + L V + L++MY+
Sbjct: 116 LFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYT 175
Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
+C +++ A F + E V + ++I G A ++L LF M+ ++PNE+T +S
Sbjct: 176 ECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLS 235
Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
VL C ++G ++ G+ +++ +++ L+D++ + G LD+A+ + KM K
Sbjct: 236 VLSSCALLGSLDLGK-WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK 294
Query: 256 PHAGAWGALLNA 267
AW A++ A
Sbjct: 295 -DTQAWSAMIVA 305
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/442 (41%), Positives = 281/442 (63%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
+ DV ++++ AK ++ + ++F + RD I+WN+++AGY Q G+ EAL LF
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
M VK V+ SV+ AC HL L G+ H Y+ R + + +ALVDMYSKCGN
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
+ A F M + +WT++I G A++G G +++ LF MK+ GV+PN+V FV+VL
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
C VGLV+E +F+SM + YG+ LEHY + DL GRAG+L+EA + I+KM ++P
Sbjct: 454 CSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGS 513
Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
W LL++C ++KN E+ E + K+ ++++N GAYVL+ N+YA + W + +R M+
Sbjct: 514 VWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMR 573
Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
KG++K P CS IE+ + H F +GD +HP ++I L + +++ GYVA+T+ V++
Sbjct: 574 KKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLH 633
Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
D++EE K + L HSE++A+AFG+I+ + G IR+ KN+R+C DCH K ISK+ REI
Sbjct: 634 DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREI 693
Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
IVRD +RFHHF G CSC YW
Sbjct: 694 IVRDNSRFHHFNRGNCSCGDYW 715
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 19/276 (6%)
Query: 1 MYAELGCLGY---CQKVFDGIHE-------PDVVCQTAMISACAKCGDVDLARKMFDEMP 50
MYA+L +G VFD + + DV +T C +D R++F+ MP
Sbjct: 149 MYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET-----CIMPFGIDSVRRVFEVMP 203
Query: 51 ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
+D +++N ++AGYAQ G +AL + M D+K + ++ SVL + + +G+
Sbjct: 204 RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE 263
Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
H Y+ R + V +G++LVDMY+K + + F + R+ +W S++ G NG
Sbjct: 264 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGR 323
Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
++L LF M A V+P V F SV+ C + + G++ H +R +G ++
Sbjct: 324 YNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIA-- 381
Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
LVD+Y + G + A + ++M + +W A++
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEV-SWTAII 416
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 46 FDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105
F + +AW +++ + +AL F M+ + SVL +CT + L
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSK---------CGNMNKAMD----------- 145
G H +I R + + G AL++MY+K GN+ M
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 146 ----------------FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
F M ++V ++ ++I G A +G E +L + M ++P+
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
T SVL V +G+E + R+ GI+ + LVD+Y ++ R++++ V
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 250 NKM 252
+++
Sbjct: 301 SRL 303
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 39/180 (21%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY++ G + +K+FD ++ D V TA+I
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAII------------------------------ 416
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV--YIERN 118
G+A G EA+ LF M+ VK N+V+ V+VL+AC+H+G +D+ W + +
Sbjct: 417 -MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA-WGYFNSMTKVY 474
Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKSLEL 177
L + A+ D+ + G + +A +F M E W++++ +++ K+LEL
Sbjct: 475 GLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH----KNLEL 530
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 107/256 (41%), Gaps = 13/256 (5%)
Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWT 159
T + + Q + H R + ++ T + ++ +Y+ +++A+ F +K V W
Sbjct: 16 TRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWK 74
Query: 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219
SVI K+L F M+ +G P+ F SVL+ C ++ + G E
Sbjct: 75 SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG-ESVHGFIVR 133
Query: 220 YGIEPWLEHYGCLVDLYGR---AGRLDEALDVINKMPMK-PHAGAWGALLNACRMYKNTE 275
G++ L L+++Y + G +V ++MP + ++G C M
Sbjct: 134 LGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM----P 189
Query: 276 MGELASRKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK--KLPGCSVI 332
G + R++ E + K+ +Y + YA+S ++ + + + M +K SV+
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 333 EVDREVHEFFAGDETH 348
+ E + G E H
Sbjct: 250 PIFSEYVDVIKGKEIH 265
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/461 (42%), Positives = 285/461 (61%), Gaps = 1/461 (0%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
Y G + ++ F+ + V+ AMI + G++ AR++FD M +RD W M+
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMI 303
Query: 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
Y + G EAL LF MQ V+ + S++S+LS C L +L GR H ++ R +
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFD 363
Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
V + + L+ MY KCG + KA F +++ W S+I G A +G GE++L++F M
Sbjct: 364 DDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEM 423
Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
+G PN+VT +++L C G +EEG E F+SM ++ + P +EHY C VD+ GRAG+
Sbjct: 424 PSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQ 483
Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
+D+A+++I M +KP A WGALL AC+ + ++ E+A++KL E E N G YVLLS+I
Sbjct: 484 VDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSI 543
Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF-AGDETHPRYNEIEVMLGE 360
A W V VR+ M+ V K PGCS IEV ++VH F G + HP I +ML +
Sbjct: 544 NASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEK 603
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
L+ AGY + + V++D++EEEK D+L +HSE++A+A+GL+ L EGVPIR++KNLRV
Sbjct: 604 TDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRV 663
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH K+ISKV REII+RD NRFHHF G+CSC+ YW
Sbjct: 664 CGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 15/285 (5%)
Query: 6 GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
G + +K++D + DVV T MI + G VD AR +FDEM ER+ + W M+ GY
Sbjct: 155 GRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYR 214
Query: 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
Q + A LF +M + EVS S+L T G ++ A + E +K +
Sbjct: 215 QNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRIED---AEEFFEVMPMKPVIA 267
Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
+V + + G ++KA F M++R+ TW +I G ++L+LF+ M++ G
Sbjct: 268 CNAMIVG-FGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQG 326
Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244
VRP+ + +S+L C + ++ GR+ H +R ++ + ++ L+ +Y + G L +
Sbjct: 327 VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVA--SVLMTMYVKCGELVK 384
Query: 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289
A V ++ K W ++++ Y + +GE A + E+ +
Sbjct: 385 AKLVFDRFSSKDII-MWNSIISG---YASHGLGEEALKIFHEMPS 425
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 18/266 (6%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
Y G +++FD + E +VV ++S K + AR +F+ MPER+ ++W AM+
Sbjct: 58 YFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMV 117
Query: 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
GY Q G EA LF M + NEVS + G +D+ R + +
Sbjct: 118 KGYMQEGMVGEAESLFWRMP----ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK--- 170
Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
V T ++ + G +++A F M+ERNV TWT++I G N + + +LF +M
Sbjct: 171 -DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM 229
Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
+ EV++ S+L G + G +E+ E F+ M ++P + +V +G G
Sbjct: 230 PE----KTEVSWTSMLLGYTLSGRIEDAEEFFEVM----PMKPVIACNAMIVG-FGEVGE 280
Query: 242 LDEALDVINKMPMKPHAGAWGALLNA 267
+ +A V + M + +A W ++ A
Sbjct: 281 ISKARRVFDLMEDRDNA-TWRGMIKA 305
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 116/263 (44%), Gaps = 49/263 (18%)
Query: 3 AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLA 62
+ +G + +K FD + + +++S G AR++FDEM ER+ ++WN +++
Sbjct: 28 SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87
Query: 63 GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122
GY + EA ++F LM ERN
Sbjct: 88 GYIKNRMIVEARNVFELMP----------------------------------ERN---- 109
Query: 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182
V TA+V Y + G + +A FW M ERN +WT + GGL +G +K+ +L+ +M
Sbjct: 110 -VVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMP 168
Query: 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
V V +++ G C G V+E R FD M RE + W ++ Y + R+
Sbjct: 169 VKDV----VASTNMIGGLCREGRVDEARLIFDEM-RERNVVTWT----TMITGYRQNNRV 219
Query: 243 DEALDVINKMPMKPHAGAWGALL 265
D A + MP K +W ++L
Sbjct: 220 DVARKLFEVMPEKTEV-SWTSML 241
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G L + VFD D++ ++IS A G + A K+F EMP +
Sbjct: 375 MYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMP---- 430
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR- 119
N+V+++++L+AC++ G L++G +E
Sbjct: 431 ---------------------------NKVTLIAILTACSYAGKLEEGLEIFESMESKFC 463
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
+ TV + VDM + G ++KAM+ M + + W +++G
Sbjct: 464 VTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGA 509
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/462 (40%), Positives = 293/462 (63%), Gaps = 2/462 (0%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
Y + G + +++F+ + V+ AMIS + G++ AR++FD M ER+ +W ++
Sbjct: 244 YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVI 303
Query: 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
+ + G EAL LF LMQ V+ +++S+LS C L +L G+ H + R +
Sbjct: 304 KIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFD 363
Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
+ V + + L+ MY KCG + K+ F +++ W S+I G A +G GE++L++F M
Sbjct: 364 VDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEM 423
Query: 182 KQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
+G +PNEVTFV+ L C G+VEEG + ++SM +G++P HY C+VD+ GRAG
Sbjct: 424 PLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAG 483
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
R +EA+++I+ M ++P A WG+LL ACR + ++ E ++KL+E+E +N G Y+LLSN
Sbjct: 484 RFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSN 543
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFF-AGDETHPRYNEIEVMLG 359
+YA W V +R++MK + V+K PGCS EV+ +VH F G +HP I +L
Sbjct: 544 MYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILD 603
Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
E+ L+ AGY + + ++D++EEEK ++L HSE++A+A+ L+ L EG+PIR++KNLR
Sbjct: 604 ELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLR 663
Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
VC DCH K+ISKV REII+RD NRFHHF+ G+CSCK YW
Sbjct: 664 VCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 156/341 (45%), Gaps = 61/341 (17%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
Y + G + +KVFD + E +VV TA++ G VD+A +F +MPE++ ++W ML
Sbjct: 89 YMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVML 148
Query: 62 AGYAQCGKSREALHLFHLM----------QIHDV--------------KLNEVSMVSVLS 97
G+ Q G+ +A L+ ++ IH + +++E S+++ +
Sbjct: 149 IGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTT 208
Query: 98 ACTHLGA---LDQGR-------------WAHV---YIERNRLK-----------MTVTLG 127
T G +D R W + Y++ R++ V
Sbjct: 209 MVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC 268
Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
A++ + G + KA F MKERN +W +VI NG ++L+LF LM++ GVR
Sbjct: 269 NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVR 328
Query: 188 PNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
P T +S+L C + + G++ H +R ++ ++ ++ L+ +Y + G L ++
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA--SVLMTMYIKCGELVKSK 386
Query: 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
+ ++ P K W ++++ Y + +GE A + E+
Sbjct: 387 LIFDRFPSK-DIIMWNSIISG---YASHGLGEEALKVFCEM 423
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 20/237 (8%)
Query: 30 ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89
I+ ++ G + ARK+FD + +WN+M+AGY R+A LF M ++
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI---- 79
Query: 90 VSMVSVLSACTHLGALDQGRWAH-VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148
+S ++S G +D+ R + ERN V TALV Y G ++ A FW
Sbjct: 80 ISWNGLVSGYMKNGEIDEARKVFDLMPERN-----VVSWTALVKGYVHNGKVDVAESLFW 134
Query: 149 GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
M E+N +WT ++ G +G + + +L+ ++ + + S++ G C G V+E
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDE 190
Query: 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
RE FD M E + W +V YG+ R+D+A + + MP K +W ++L
Sbjct: 191 AREIFDEM-SERSVITWT----TMVTGYGQNNRVDDARKIFDVMPEKTEV-SWTSML 241
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 129/255 (50%), Gaps = 20/255 (7%)
Query: 12 QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
+K+FD + + +++ ++S K G++D ARK+FD MPER+ ++W A++ GY GK
Sbjct: 68 RKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVD 127
Query: 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTAL 130
A LF M + N+VS +L G +D + + +++ + T++
Sbjct: 128 VAESLFWKMP----EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIAR-----TSM 178
Query: 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
+ K G +++A + F M ER+V TWT+++ G N + + ++F +M + E
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TE 234
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
V++ S+L G G +E+ E F+ M ++P + ++ G+ G + +A V +
Sbjct: 235 VSWTSMLMGYVQNGRIEDAEELFEVM----PVKPVIA-CNAMISGLGQKGEIAKARRVFD 289
Query: 251 KMPMKPHAGAWGALL 265
M + A +W ++
Sbjct: 290 SMKERNDA-SWQTVI 303
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 32/166 (19%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G L + +FD D++ ++IS A G + A K+F EMP
Sbjct: 375 MYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMP---------- 424
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
L+G K NEV+ V+ LSAC++ G +++G + +E
Sbjct: 425 LSG--------------------STKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFG 464
Query: 121 KMTVTLGTA-LVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGG 164
+T A +VDM + G N+AM+ M E + W S++G
Sbjct: 465 VKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 275/440 (62%), Gaps = 1/440 (0%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
+V ++IS KC +VD A MF ++ R ++WNAM+ G+AQ G+ +AL+ F M+
Sbjct: 371 NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMR 430
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
VK + + VSV++A L +W H + R+ L V + TALVDMY+KCG +
Sbjct: 431 SRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIM 490
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
A F M ER+V TW ++I G +G G+ +LELF M++ ++PN VTF+SV+ C
Sbjct: 491 IARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
GLVE G + F M+ Y IE ++HYG +VDL GRAGRL+EA D I +MP+KP +
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
GA+L AC+++KN E A+ +L EL + G +VLL+NIY + W++V VR M +
Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
G++K PGCS++E+ EVH FF+G HP +I L ++ +K AGYV +TN V+ +
Sbjct: 671 GLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GV 729
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
E + KE L HSEK+AI+FGL++ G I + KNLRVC DCH+ TK IS V REI+V
Sbjct: 730 ENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVV 789
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RD RFHHFK G CSC YW
Sbjct: 790 RDMQRFHHFKNGACSCGDYW 809
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 135/244 (55%), Gaps = 2/244 (0%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D+ T + + AKC V+ ARK+FD MPERD ++WN ++AGY+Q G +R AL + M
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
++K + +++VSVL A + L + G+ H Y R+ V + TALVDMY+KCG++
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
A F GM ERNV +W S+I N ++++ +F M GV+P +V+ + L C
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
+G +E GR + E G++ + L+ +Y + +D A + K+ + +W
Sbjct: 349 DLGDLERGR-FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLV-SW 406
Query: 262 GALL 265
A++
Sbjct: 407 NAMI 410
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 133/260 (51%), Gaps = 9/260 (3%)
Query: 9 GYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
GY + FD + V TA++ AKCG ++ AR++FD M ER+ ++WN+M+ Y Q
Sbjct: 260 GYAMRSGFDSL----VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315
Query: 68 GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
+EA+ +F M VK +VS++ L AC LG L++GR+ H L V++
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375
Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
+L+ MY KC ++ A F ++ R + +W ++I G A NG +L FS M+ V+
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435
Query: 188 PNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246
P+ T+VSV+ + + + H MR ++ LVD+Y + G + A
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVT--TALVDMYAKCGAIMIAR 493
Query: 247 DVINKMPMKPHAGAWGALLN 266
+ + M + H W A+++
Sbjct: 494 LIFDMMSER-HVTTWNAMID 512
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 135/262 (51%), Gaps = 4/262 (1%)
Query: 26 QTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
QT ++S + G VD A ++F+ + + + ++ ML G+A+ +AL F M+ DV
Sbjct: 72 QTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV 131
Query: 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
+ + +L C L G+ H + ++ + + T L +MY+KC +N+A
Sbjct: 132 EPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARK 191
Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205
F M ER++ +W +++ G + NG +LE+ M + ++P+ +T VSVL + L
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRL 251
Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
+ G+E H +MR G + + LVD+Y + G L+ A + + M ++ + +W ++
Sbjct: 252 ISVGKEIHGYAMRS--GFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSM 308
Query: 265 LNACRMYKNTEMGELASRKLVE 286
++A +N + L +K+++
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLD 330
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
+ +V TA++ AKCG + +AR +FD M ER WNAM+ GY G + AL LF
Sbjct: 470 DKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEE 529
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
MQ +K N V+ +SV+SAC+H G ++ G + ++ E +++++ A+VD+ + G
Sbjct: 530 MQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAG 589
Query: 139 NMNKAMDFFWGMKER---NVY 156
+N+A DF M + NVY
Sbjct: 590 RLNEAWDFIMQMPVKPAVNVY 610
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/450 (42%), Positives = 293/450 (65%), Gaps = 1/450 (0%)
Query: 13 KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSRE 72
+VF E DV Q ++I+ +CG+++L+ +F+++ + +W++M++ A G E
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216
Query: 73 ALHLFHLM-QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
L LF M ++K E MVS L AC + GAL+ G H ++ RN ++ + + T+LV
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276
Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191
DMY KCG ++KA+ F M++RN T++++I GLA++G GE +L +FS M + G+ P+ V
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336
Query: 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251
+VSVL C GLV+EGR F M +E +EP EHYGCLVDL GRAG L+EAL+ I
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 396
Query: 252 MPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311
+P++ + W L+ CR+ +N E+G++A+++L++L + N G Y+L+SN+Y++ + WD V
Sbjct: 397 IPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDV 456
Query: 312 INVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYV 371
R + KG+K+ PG S++E+ + H F + D +HP+ EI ML ++ +LK GY
Sbjct: 457 ARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516
Query: 372 ANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMI 431
+ ++ +++EEEK++ L HS+KVAIAFGL+ G I+I +NLR+C DCH TK I
Sbjct: 517 PDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKI 576
Query: 432 SKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
S ++ REI+VRDRNRFH FK G CSCK YW
Sbjct: 577 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 7/282 (2%)
Query: 29 MISACAKCG---DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85
+++ CA G ++ A +F + + +N M+ GY EAL ++ M
Sbjct: 69 VLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGN 128
Query: 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145
+ + + +L ACT L ++ +G+ H + + L+ V + +L++MY +CG M +
Sbjct: 129 EPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSA 188
Query: 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVG 204
F ++ + +W+S++ A G + L LF M + ++ E VS L C G
Sbjct: 189 VFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTG 248
Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
+ G + R E + LVD+Y + G LD+AL + KM K + + A+
Sbjct: 249 ALNLGMSIHGFLLRNIS-ELNIIVQTSLVDMYVKCGCLDKALHIFQKME-KRNNLTYSAM 306
Query: 265 LNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAES 305
++ ++ E + S+ + E +H YV + N + S
Sbjct: 307 ISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHS 348
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + GCL +F + + + + +AMIS A G+ + A +MF +M
Sbjct: 278 MYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI---------- 327
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV-YIERNR 119
+E L H V VSVL+AC+H G + +GR ++ +
Sbjct: 328 ----------KEGLEPDH-----------VVYVSVLNACSHSGLVKEGRRVFAEMLKEGK 366
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIG 163
++ T LVD+ + G + +A++ + E+N W + +
Sbjct: 367 VEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLS 411
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/445 (43%), Positives = 289/445 (64%), Gaps = 2/445 (0%)
Query: 19 HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
+E TA++ A K G V+ A K+F + ++D +AW+AMLAGYAQ G++ A+ +F
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 483
Query: 79 LMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
+ +K NE + S+L+ C A + QG+ H + ++RL ++ + +AL+ MY+K
Sbjct: 484 ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 543
Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
GN+ A + F +E+++ +W S+I G A +G K+L++F MK+ V+ + VTF+ V
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603
Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
C GLVEEG ++FD M R+ I P EH C+VDLY RAG+L++A+ VI MP
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663
Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
+ W +L ACR++K TE+G LA+ K++ ++ ++ AYVLLSN+YAES +W VR++
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723
Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
M + VKK PG S IEV + + F AGD +HP ++I + L ++S RLK GY +T+ V
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 783
Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437
+ DI++E KE L +HSE++AIAFGLI+ +G P+ I+KNLRVC DCH V K+I+K+ R
Sbjct: 784 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 843
Query: 438 EIIVRDRNRFHHF-KEGKCSCKGYW 461
EI+VRD NRFHHF +G CSC +W
Sbjct: 844 EIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 136/272 (50%), Gaps = 16/272 (5%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
+ + ++I+ KCG+V AR +FD+ + + WN+M++GYA G EAL +F+
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
M+++ V+L+E S SV+ C +L L H + + + TAL+ YSKC
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345
Query: 140 MNKAMDFFWGMKE----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
M A+ F KE NV +WT++I G N E++++LFS MK+ GVRPNE T+
Sbjct: 346 MLDALRLF---KEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSV 402
Query: 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
+L V+ E H ++ Y E L+D Y + G+++EA V + + K
Sbjct: 403 ILTALPVISPSE---VHAQVVKTNY--ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK 457
Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVEL 287
AW A+L Y T E A + EL
Sbjct: 458 DIV-AWSAMLAG---YAQTGETEAAIKMFGEL 485
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 1/192 (0%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+CQ + G + DV T+++ K + RK+FDEM ER+ + W +++GYA+
Sbjct: 116 HCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSM 174
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
+ E L LF MQ + N + + L G +G H + +N L T+ + +
Sbjct: 175 NDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 234
Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
L+++Y KCGN+ KA F + ++V TW S+I G A NG ++L +F M+ VR +
Sbjct: 235 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLS 294
Query: 190 EVTFVSVLRGCC 201
E +F SV++ C
Sbjct: 295 ESSFASVIKLCA 306
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 125/246 (50%), Gaps = 6/246 (2%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLM 80
D +TA++ A +KC + A ++F E+ + ++W AM++G+ Q EA+ LF M
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388
Query: 81 QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
+ V+ NE + +L+A + + H + + + + T+GTAL+D Y K G +
Sbjct: 389 KRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKV 444
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
+A F G+ ++++ W++++ G A G E ++++F + + G++PNE TF S+L C
Sbjct: 445 EEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504
Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
+ F + ++ L L+ +Y + G ++ A +V + K +
Sbjct: 505 AATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLV-S 563
Query: 261 WGALLN 266
W ++++
Sbjct: 564 WNSMIS 569
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 112/225 (49%), Gaps = 2/225 (0%)
Query: 42 ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
A +FD+ P RD ++ ++L G+++ G+++EA LF + ++++ SVL
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105
Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
L GR H + V++GT+LVD Y K N F MKERNV TWT++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165
Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
I G A N ++ L LF M+ G +PN TF + L G+ G + ++ + G
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNG 224
Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
++ + L++LY + G + +A + +K +K W ++++
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVV-TWNSMIS 268
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA+ G + ++VF E D+V +MIS A
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYA-------------------------- 572
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
Q G++ +AL +F M+ VK++ V+ + V +ACTH G +++G ++ + + +
Sbjct: 573 -----QHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 627
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150
+ T + +VD+YS+ G + KAM M
Sbjct: 628 IAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/438 (43%), Positives = 276/438 (63%), Gaps = 5/438 (1%)
Query: 29 MISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-- 84
+I AKC VD AR MFD + ERD + W M+ GY+Q G + +AL L M D
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472
Query: 85 VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK-MTVTLGTALVDMYSKCGNMNKA 143
+ N ++ L AC L AL G+ H Y RN+ + + + L+DMY+KCG+++ A
Sbjct: 473 TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA 532
Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
F M +N TWTS++ G M+G GE++L +F M++ G + + VT + VL C
Sbjct: 533 RLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHS 592
Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
G++++G E+F+ M+ +G+ P EHY CLVDL GRAGRL+ AL +I +MPM+P W A
Sbjct: 593 GMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVA 652
Query: 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323
L+ CR++ E+GE A+ K+ EL + + G+Y LLSN+YA + W V +R +M+ KGV
Sbjct: 653 FLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGV 712
Query: 324 KKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEE 383
KK PGCS +E + FF GD+THP EI +L + +R+K GYV T ++D+++
Sbjct: 713 KKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDD 772
Query: 384 EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRD 443
EEK+D L +HSEK+A+A+G+++ +G IRI KNLRVC DCH +S++ + +II+RD
Sbjct: 773 EEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRD 832
Query: 444 RNRFHHFKEGKCSCKGYW 461
+RFHHFK G CSCKGYW
Sbjct: 833 SSRFHHFKNGSCSCKGYW 850
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 18/287 (6%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIA 56
MYA+ G + VF + DVV AM++ ++ G + A ++F++M E D +
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332
Query: 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY-- 114
W+A ++GYAQ G EAL + M +K NEV+++SVLS C +GAL G+ H Y
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392
Query: 115 -----IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM--KERNVYTWTSVIGGLAM 167
+ +N + L+DMY+KC ++ A F + KER+V TWT +IGG +
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452
Query: 168 NGAGEKSLELFSLM--KQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEP 224
+G K+LEL S M + RPN T L C + + G++ H ++R + P
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512
Query: 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271
L CL+D+Y + G + +A V + M M + W +L+ M+
Sbjct: 513 -LFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMH 557
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 134/278 (48%), Gaps = 46/278 (16%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
+V A+++ ++C + ARK+FDEM D ++WN+++ YA+ GK + AL +F M
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220
Query: 82 IH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
+ + +++V+VL C LG G+ H + + + + +G LVDMY+KCG M
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ----------------- 183
++A F M ++V +W +++ G + G E ++ LF M++
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340
Query: 184 ------------------AGVRPNEVTFVSVLRGCCVVGLVEEGRE--------HFDSMR 217
+G++PNEVT +SVL GC VG + G+E D +
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400
Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
+G E + + L+D+Y + ++D A + + + K
Sbjct: 401 NGHGDENMVINQ--LIDMYAKCKKVDTARAMFDSLSPK 436
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 7/241 (2%)
Query: 29 MISACAKCGDVDLARKMFDEMPERDP--IAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
+IS G + A + P D WN+++ Y G + + L+LF LM
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
+ + V AC + ++ G AH V +G ALV MYS+C +++ A
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM-KQAGVRPNEVTFVSVLRGCCVVGL 205
F M +V +W S+I A G + +LE+FS M + G RP+ +T V+VL C +G
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244
Query: 206 VEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
G++ H ++ E ++ + CLVD+Y + G +DEA V + M +K +W A+
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGN--CLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAM 301
Query: 265 L 265
+
Sbjct: 302 V 302
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/464 (42%), Positives = 288/464 (62%), Gaps = 3/464 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA+ G L + VFD I + + TAM+S AK G + A ++F +P ++ +W A+
Sbjct: 149 MYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTAL 208
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
++G+ Q GK EA +F M+ V L+ + + S++ AC +L A GR H +
Sbjct: 209 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALG 268
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
V + AL+DMY+KC ++ A D F M+ R+V +WTS+I G+A +G EK+L L+
Sbjct: 269 FDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 328
Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
M GV+PNEVTFV ++ C VG VE+GRE F SM ++YGI P L+HY CL+DL GR+
Sbjct: 329 DMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 388
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
G LDEA ++I+ MP P W ALL+AC+ +MG +A + + K+ Y+LL
Sbjct: 389 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILL 448
Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
SNIYA + W +V R+ + V+K PG S +EV +E F+AG+ +HP +I +L
Sbjct: 449 SNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 508
Query: 359 GEISRRLKL-AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
++ +++ GYV +T+ +++D++E+EKE L HSE+ A+A+GL+ G PIRIVKN
Sbjct: 509 KKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKN 568
Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
LRVC DCH V K IS++ REIIVRD R+HHFK GKCSC +W
Sbjct: 569 LRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 5/193 (2%)
Query: 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VK 86
+++ KCG A ++FDEMP RD IAW ++L Q S + L +F + ++
Sbjct: 43 TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 102
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
++ +++ AC +LG++D GR H + + + ++LVDMY+KCG +N A
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
F ++ +N +WT+++ G A +G E++LELF ++ N ++ +++ G G
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPV----KNLYSWTALISGFVQSGKG 218
Query: 207 EEGREHFDSMRRE 219
E F MRRE
Sbjct: 219 LEAFSVFTEMRRE 231
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 8/212 (3%)
Query: 96 LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
L C L + H +I + + L LV++Y KCG + A+ F M R+
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 156 YTWTSVIGGL-AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HF 213
W SV+ L N +G+ S+ +G+RP++ F ++++ C +G ++ GR+ H
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
+ EY + ++ LVD+Y + G L+ A V + + +K + +W A+++ Y
Sbjct: 130 HFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSG---YAK 183
Query: 274 TEMGELASRKLVELETKNHGAYVLLSNIYAES 305
+ E A L KN ++ L + + +S
Sbjct: 184 SGRKEEALELFRILPVKNLYSWTALISGFVQS 215
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 291/471 (61%), Gaps = 12/471 (2%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G + +++F+ + E VV T ++ K ++ R++F EMPER+ +AW M
Sbjct: 155 MYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVM 214
Query: 61 LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
+AGY G +RE L L M LN V++ S+LSAC G L GRW HVY +
Sbjct: 215 VAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKE 274
Query: 120 LKM-------TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGE 172
+ M V +GTALVDMY+KCGN++ +M+ F M++RNV TW ++ GLAM+G G
Sbjct: 275 MMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGR 334
Query: 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232
+++F M + V+P+++TF +VL C G+V+EG F S+R YG+EP ++HY C+
Sbjct: 335 MVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRF-YGLEPKVDHYACM 392
Query: 233 VDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292
VDL GRAG ++EA ++ +MP+ P+ G+LL +C ++ E+ E R+L+++ N
Sbjct: 393 VDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNT 452
Query: 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYN 352
+L+SN+Y D +R ++ +G++K+PG S I V+ VH F +GD +HPR
Sbjct: 453 EYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTK 512
Query: 353 EIEVMLGEISRRLKLAGYVANTNPVMYDIEE--EEKEDTLCKHSEKVAIAFGLISLKEGV 410
EI + L E+ R++ AGYV + + ++ E EEKE LC HSEK+A+ FGL+ K
Sbjct: 513 EIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPST 572
Query: 411 PIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
P+ + KNLR+C DCH K++SKV++REII+RDRNRFH FK G CSC YW
Sbjct: 573 PLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 41/296 (13%)
Query: 21 PDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFH 78
P A+ A G++ A+K+FDE+P E+D + W +L+ +++ G ++ LF
Sbjct: 41 PRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFV 100
Query: 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
M+ V++++VS+V + C L L + H + + +V + AL+DMY KCG
Sbjct: 101 EMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCG 160
Query: 139 -------------------------------NMNKAMDFFWGMKERNVYTWTSVIGGLAM 167
+ + + F M ERN WT ++ G
Sbjct: 161 LVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLG 220
Query: 168 NGAGEKSLELFSLMK-QAGVRPNEVTFVSVLRGCCVVGLVEEGR-EHFDSMRRE--YGIE 223
G + LEL + M + G N VT S+L C G + GR H ++++E G E
Sbjct: 221 AGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEE 280
Query: 224 PWLEHY---GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEM 276
+ LVD+Y + G +D +++V M K + W AL + M+ M
Sbjct: 281 ASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM-RKRNVVTWNALFSGLAMHGKGRM 335
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/456 (43%), Positives = 285/456 (62%), Gaps = 6/456 (1%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+C V G D Q A+++ +KCGD++ AR++FD MPE+ +AWN++++G+ Q G
Sbjct: 130 HCHAVVSGF-GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGL 188
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
+ EA+ +F+ M+ + + + VS+LSAC GA+ G W H YI L + V LGTA
Sbjct: 189 ADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTA 248
Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMK-QAGVRP 188
L+++YS+CG++ KA + F MKE NV WT++I +G G++++ELF+ M+ G P
Sbjct: 249 LINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIP 308
Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
N VTFV+VL C GLVEEGR + M + Y + P +EH+ C+VD+ GRAG LDEA
Sbjct: 309 NNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKF 368
Query: 249 INKMPMKPHAGA---WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305
I+++ A A W A+L AC+M++N ++G +++L+ LE N G +V+LSNIYA S
Sbjct: 369 IHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALS 428
Query: 306 KNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRL 365
D V ++R M ++K G SVIEV+ + + F GDE+H EI L + R
Sbjct: 429 GKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRC 488
Query: 366 KLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCH 425
K GY + VM+ +EEEEKE L HSEK+A+AFGL+ + V I IVKNLR+C DCH
Sbjct: 489 KEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCH 547
Query: 426 DVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
K IS V NR+I VRD+ RFHHF+ G CSC YW
Sbjct: 548 SAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 2/241 (0%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
T +I+ + +F +P D +N+++ ++ + + M +V
Sbjct: 45 TKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVS 104
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
+ + SV+ +C L AL G+ H + + + + ALV YSKCG+M A
Sbjct: 105 PSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQV 164
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
F M E+++ W S++ G NG ++++++F M+++G P+ TFVS+L C G V
Sbjct: 165 FDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAV 224
Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
G + E G++ ++ L++LY R G + +A +V +KM + + AW A+++
Sbjct: 225 SLGSWVHQYIISE-GLDLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMIS 282
Query: 267 A 267
A
Sbjct: 283 A 283
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+Y+ G +G ++VFD + E +V TAMISA G A ++F++M +
Sbjct: 252 LYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMED--------- 302
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-R 119
CG N V+ V+VLSAC H G +++GR + + ++ R
Sbjct: 303 -----DCGPIP----------------NNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYR 341
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT----WTSVIGGLAMN 168
L V +VDM + G +++A F + T WT+++G M+
Sbjct: 342 LIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMH 394
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/429 (44%), Positives = 271/429 (63%), Gaps = 5/429 (1%)
Query: 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97
+V + MF +M ++ ++WN M+ Y + EA+ L+ M+ + + VS+ SVL
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317
Query: 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157
AC AL G+ H YIER +L + L AL+DMY+KCG + KA D F MK R+V +
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS 377
Query: 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217
WT++I +G G ++ LFS ++ +G+ P+ + FV+ L C GL+EEGR F M
Sbjct: 378 WTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMT 437
Query: 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
Y I P LEH C+VDL GRAG++ EA I M M+P+ WGALL ACR++ +T++G
Sbjct: 438 DHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIG 497
Query: 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDRE 337
LA+ KL +L + G YVLLSNIYA++ W+ V N+R IMK+KG+KK PG S +EV+R
Sbjct: 498 LLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRI 557
Query: 338 VHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKV 397
+H F GD +HP+ +EI L + +++K GYV ++ ++D+EEE+KE L HSEK+
Sbjct: 558 IHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKL 617
Query: 398 AIAFGLISLKE-----GVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKE 452
AI F L++ KE IRI KNLR+C DCH K+IS++ +REII+RD NRFH F+
Sbjct: 618 AIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRF 677
Query: 453 GKCSCKGYW 461
G CSC YW
Sbjct: 678 GVCSCGDYW 686
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 147/313 (46%), Gaps = 17/313 (5%)
Query: 22 DVVCQTAM----ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77
D+ C +++ + A A DV ARK+FDE+PER+ I N M+ Y G E + +F
Sbjct: 69 DLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF 128
Query: 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
M +V+ + + VL AC+ G + GR H + L T+ +G LV MY KC
Sbjct: 129 GTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKC 188
Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
G +++A M R+V +W S++ G A N + +LE+ M+ + + T S+L
Sbjct: 189 GFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 248
Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP---M 254
V E + M + G + L + ++ +Y + EA+++ ++M
Sbjct: 249 PA--VSNTTTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305
Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN----IYAESKNWDR 310
+P A + ++L AC +T L + +E K +LL N +YA+ ++
Sbjct: 306 EPDAVSITSVLPAC---GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362
Query: 311 VINVRQIMKAKGV 323
+V + MK++ V
Sbjct: 363 ARDVFENMKSRDV 375
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Query: 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN 168
R H I L+ +LG L+ Y+ ++ A F + ERNV +I N
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228
G + +++F M VRP+ TF VL+ C G + GR+ S + G+ L
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK-VGLSSTLFV 177
Query: 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265
LV +YG+ G L EA V+++M + +W +L+
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/461 (43%), Positives = 277/461 (60%), Gaps = 1/461 (0%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAM 60
Y E G L F VV TAMI+ K V+LA MF +M ++ + WNAM
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GY + + + L LF M ++ N + S L C+ L AL GR H + ++ L
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL 315
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
VT T+L+ MY KCG + A F MK+++V W ++I G A +G +K+L LF
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFRE 375
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M +RP+ +TFV+VL C GLV G +F+SM R+Y +EP +HY C+VDL GRAG
Sbjct: 376 MIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAG 435
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
+L+EAL +I MP +PHA +G LL ACR++KN E+ E A+ KL++L ++N YV L+N
Sbjct: 436 KLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLAN 495
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA W+ V VR+ MK V K+PG S IE+ +VH F + D HP + I L E
Sbjct: 496 IYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKE 555
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
+ +++KLAGY ++++EEE+KE L HSEK+A+AFG I L +G I++ KNLR+
Sbjct: 556 LEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRI 615
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH K IS++ REIIVRD RFHHFK+G CSC YW
Sbjct: 616 CGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 138/308 (44%), Gaps = 24/308 (7%)
Query: 12 QKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71
++FD I EPD M+S + + + A+ FD MP +D +WN M+ GYA+ G+
Sbjct: 113 HQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEME 172
Query: 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
+A LF+ M ++ NEVS +++S G L++ +H + + V TA++
Sbjct: 173 KARELFYSM----MEKNEVSWNAMISGYIECGDLEKA--SHFF--KVAPVRGVVAWTAMI 224
Query: 132 DMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
Y K + A F M +N+ TW ++I G N E L+LF M + G+RPN
Sbjct: 225 TGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNS 284
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
S L GC + ++ GR+ + + + L+ +Y + G L +A +
Sbjct: 285 SGLSSALLGCSELSALQLGRQIHQIVSKSTLCND-VTALTSLISMYCKCGELGDAWKLFE 343
Query: 251 KMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-------------NHGAYVL 297
M K AW A+++ + N + R++++ + + NH V
Sbjct: 344 VMK-KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402
Query: 298 LSNIYAES 305
+ Y ES
Sbjct: 403 IGMAYFES 410
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G LG K+F+ + + DVV AMIS A+ G+ D
Sbjct: 328 MYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNAD-------------------- 367
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNR 119
+AL LF M + ++ + ++ V+VL AC H G ++ G + + +
Sbjct: 368 -----------KALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYK 416
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
++ T +VD+ + G + +A+ M R
Sbjct: 417 VEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/457 (42%), Positives = 292/457 (63%), Gaps = 12/457 (2%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+CQ G+ ++C T ++ A +K GD+ A K+FDEMP RD +WNA++AG +
Sbjct: 132 HCQINRRGLSADSLLC-TTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNR 190
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGT 128
+ EA+ L+ M+ ++ +EV++V+ L AC+HLG + +G H Y N V +
Sbjct: 191 ASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDN-----VIVSN 245
Query: 129 ALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
A +DMYSKCG ++KA F +++V TW ++I G A++G ++LE+F ++ G++
Sbjct: 246 AAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIK 305
Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
P++V++++ L C GLVE G F++M + G+E ++HYGC+VDL RAGRL EA D
Sbjct: 306 PDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMKHYGCVVDLLSRAGRLREAHD 364
Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
+I M M P W +LL A +Y + EM E+ASR++ E+ N G +VLLSN+YA
Sbjct: 365 IICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGR 424
Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL 367
W V VR M++K VKK+PG S IE +HEF+ D++H ++ EI + EI +++
Sbjct: 425 WKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIRE 484
Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISL---KEGVPIRIVKNLRVCWDC 424
GYVA T V++DI EEEKE+ LC HSEK+A+A+GL+ + E P+R++ NLR+C DC
Sbjct: 485 DGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDC 544
Query: 425 HDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
H V K ISK++ REIIVRDR RFH FK+G CSC+ +W
Sbjct: 545 HVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 32 ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
A + GD+ A ++F +P+ WNA++ G+A A + M + +
Sbjct: 46 AISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAIC 105
Query: 92 MVSVLS------ACTHL---GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
V L+ AC A+DQ H I R L L T L+D YSK G++
Sbjct: 106 RVDALTCSFTLKACARALCSSAMDQ---LHCQINRRGLSADSLLCTTLLDAYSKNGDLIS 162
Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
A F M R+V +W ++I GL +++EL+ M+ G+R +EVT V+ L C
Sbjct: 163 AYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSH 222
Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
+G V+EG F + I +D+Y + G +D+A V + K W
Sbjct: 223 LGDVKEGENIFHGYSNDNVIVS-----NAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWN 277
Query: 263 ALLN 266
++
Sbjct: 278 TMIT 281
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Query: 3 AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ERDPIAWNAML 61
+ LG + + +F G +V+ A I +KCG VD A ++F++ ++ + WN M+
Sbjct: 221 SHLGDVKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMI 280
Query: 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
G+A G++ AL +F ++ + +K ++VS ++ L+AC H G ++ G + ++
Sbjct: 281 TGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVE 340
Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGG 164
+ +VD+ S+ G + +A D M + W S++G
Sbjct: 341 RNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGA 384
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/440 (42%), Positives = 270/440 (61%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D+ Q A+++ ++CG ++ + F++ D IAWNA+++G+ Q G + EAL +F M
Sbjct: 625 DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
+ N + S + A + + QG+ H I + + AL+ MY+KCG+++
Sbjct: 685 REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
A F + +N +W ++I + +G G ++L+ F M + VRPN VT V VL C
Sbjct: 745 DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
+GLV++G +F+SM EYG+ P EHY C+VD+ RAG L A + I +MP+KP A W
Sbjct: 805 HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
LL+AC ++KN E+GE A+ L+ELE ++ YVLLSN+YA SK WD RQ MK K
Sbjct: 865 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
GVKK PG S IEV +H F+ GD+ HP +EI ++++R GYV + ++ ++
Sbjct: 925 GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNEL 984
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
+ E+K+ + HSEK+AI+FGL+SL VPI ++KNLRVC DCH K +SKV NREIIV
Sbjct: 985 QHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1044
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RD RFHHF+ G CSCK YW
Sbjct: 1045 RDAYRFHHFEGGACSCKDYW 1064
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 2/248 (0%)
Query: 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
A+++ AKC D++ A F E + + WN ML Y R + +F MQI ++
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 488
Query: 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
N+ + S+L C LG L+ G H I + ++ + + L+DMY+K G ++ A D
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
++V +WT++I G +K+L F M G+R +EV + + C + ++
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Query: 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
EG++ + G L LV LY R G+++E+ + + AW AL++
Sbjct: 609 EGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSG 666
Query: 268 CRMYKNTE 275
+ N E
Sbjct: 667 FQQSGNNE 674
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 133/271 (49%), Gaps = 5/271 (1%)
Query: 17 GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
G VC A++S G++ A +F M +RD + +N ++ G +QCG +A+ L
Sbjct: 318 GFSSDTYVCN-ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376
Query: 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
F M + ++ + ++ S++ AC+ G L +G+ H Y + + AL+++Y+K
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 436
Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
C ++ A+D+F + NV W ++ + S +F M+ + PN+ T+ S+
Sbjct: 437 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496
Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
L+ C +G +E G + H ++ + + ++ L+D+Y + G+LD A D++ + K
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK 554
Query: 256 PHAGAWGALLNACRMYKNTEMGELASRKLVE 286
+W ++ Y + R++++
Sbjct: 555 D-VVSWTTMIAGYTQYNFDDKALTTFRQMLD 584
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 140/281 (49%), Gaps = 15/281 (5%)
Query: 14 VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
++ G+ + VVC +I ++ G VDLAR++FD + +D +W AM++G ++ EA
Sbjct: 214 LYQGLRDSTVVCN-PLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEA 272
Query: 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
+ LF M + + + SVLSAC + +L+ G H + + + ALV +
Sbjct: 273 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL 332
Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
Y GN+ A F M +R+ T+ ++I GL+ G GEK++ELF M G+ P+ T
Sbjct: 333 YFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTL 392
Query: 194 VSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252
S++ C G + G++ H + + + +E G L++LY + ++ ALD +
Sbjct: 393 ASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETALDYFLET 450
Query: 253 PMKPHAGAWGALL----------NACRMYKNTEMGELASRK 283
++ + W +L N+ R+++ ++ E+ +
Sbjct: 451 EVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 123/264 (46%), Gaps = 3/264 (1%)
Query: 4 ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAG 63
ELG + Q + VC + +I AK G +D A + +D ++W M+AG
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVC-SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 565
Query: 64 YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
Y Q +AL F M ++ +EV + + +SAC L AL +G+ H +
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 625
Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
+ ALV +YS+CG + ++ F + + W +++ G +G E++L +F M +
Sbjct: 626 LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 685
Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243
G+ N TF S ++ +++G++ ++ + G + E L+ +Y + G +
Sbjct: 686 EGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSIS 744
Query: 244 EALDVINKMPMKPHAGAWGALLNA 267
+A ++ K +W A++NA
Sbjct: 745 DAEKQFLEVSTKNEV-SWNAIINA 767
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 106/234 (45%), Gaps = 7/234 (2%)
Query: 37 GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96
GD+ A K+FDEMPER WN M+ A E LF M +V NE + VL
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 193
Query: 97 SACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV 155
AC A D H I L+ + + L+D+YS+ G ++ A F G++ ++
Sbjct: 194 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 253
Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215
+W ++I GL+ N +++ LF M G+ P F SVL C + +E G E
Sbjct: 254 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHG 312
Query: 216 MRREYGIEPWLEHYGC--LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
+ + G + Y C LV LY G L A + + M + A + L+N
Sbjct: 313 LVLKLGFSS--DTYVCNALVSLYFHLGNLISAEHIFSNMSQRD-AVTYNTLING 363
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 2/184 (1%)
Query: 85 VKLNEVSMVSVLSACTHL-GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143
++ N ++ +L C G+LD+GR H I + L L L D Y G++ A
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 144 MDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203
F M ER ++TW +I LA + LF M V PNE TF VL C
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199
Query: 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263
+ + E + G+ L+DLY R G +D A V + + +K H+ +W A
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS-SWVA 258
Query: 264 LLNA 267
+++
Sbjct: 259 MISG 262
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 185 GVRPNEVTFVSVLRGCCVV-GLVEEGREHFDSMRREYGIEPWLEHYGC----LVDLYGRA 239
G+RPN T +L GC G ++EGR+ + ++ L+ GC L D Y
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQI-----LKLGLDSNGCLSEKLFDFYLFK 133
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285
G L A V ++MP + W N + ELASR L+
Sbjct: 134 GDLYGAFKVFDEMPERT-IFTW-----------NKMIKELASRNLI 167
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/441 (42%), Positives = 278/441 (63%), Gaps = 1/441 (0%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLM- 80
D+ A++ AKCG + A +F EM +D I+WN ++ GY++ + EAL LF+L+
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 81 QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
+ +E ++ VL AC L A D+GR H YI RN + +LVDMY+KCG +
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
A F + +++ +WT +I G M+G G++++ LF+ M+QAG+ +E++FVS+L C
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610
Query: 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
GLV+EG F+ MR E IEP +EHY C+VD+ R G L +A I MP+ P A
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 670
Query: 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320
WGALL CR++ + ++ E + K+ ELE +N G YVL++NIYAE++ W++V +R+ +
Sbjct: 671 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 730
Query: 321 KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYD 380
+G++K PGCS IE+ V+ F AGD ++P IE L ++ R+ GY T + D
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALID 790
Query: 381 IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREII 440
EE EKE+ LC HSEK+A+A G+IS G IR+ KNLRVC DCH++ K +SK+ REI+
Sbjct: 791 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 850
Query: 441 VRDRNRFHHFKEGKCSCKGYW 461
+RD NRFH FK+G CSC+G+W
Sbjct: 851 LRDSNRFHQFKDGHCSCRGFW 871
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 129/223 (57%), Gaps = 5/223 (2%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D C T ++ +KCGD+D A+ +F EM +R +++ +M+AGYA+ G + EA+ LF M+
Sbjct: 331 DRFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
+ + ++ +VL+ C LD+G+ H +I+ N L + + AL+DMY+KCG+M
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGC 200
+A F M+ +++ +W ++IGG + N ++L LF+ L+++ P+E T VL C
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509
Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242
+ ++GRE H MR Y + + + LVD+Y + G L
Sbjct: 510 ASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGAL 550
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 3/221 (1%)
Query: 34 AKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93
CGD+ A ++FDE+ + WN ++ A+ G ++ LF M V+++ +
Sbjct: 140 TNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFS 199
Query: 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
V + + L ++ G H +I ++ ++G +LV Y K ++ A F M ER
Sbjct: 200 CVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER 259
Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-H 212
+V +W S+I G NG EK L +F M +G+ + T VSV GC L+ GR H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319
Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
++ + E L+D+Y + G LD A V +M
Sbjct: 320 SIGVKACFSRED--RFCNTLLDMYSKCGDLDSAKAVFREMS 358
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 6/218 (2%)
Query: 51 ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110
+R N L + + G A+ L + D+ + ++ SVL C +L G+
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKE 115
Query: 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGA 170
+I N + LG+ L MY+ CG++ +A F +K W ++ LA +G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHY 229
S+ LF M +GV + TF V + + V G + H ++ +G + +
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN- 234
Query: 230 GCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
LV Y + R+D A V ++M + +W +++N
Sbjct: 235 -SLVAFYLKNQRVDSARKVFDEMTERD-VISWNSIING 270
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 286/454 (62%), Gaps = 6/454 (1%)
Query: 9 GYCQKV-FDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQC 67
G+C K FD +V +A++ + G +D A+ +FD + R+ ++WNA++AG+A+
Sbjct: 185 GFCVKCGFDS----NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARR 240
Query: 68 GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127
+ +AL LF M + + S S+ AC+ G L+QG+W H Y+ ++ K+ G
Sbjct: 241 SGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG 300
Query: 128 TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
L+DMY+K G+++ A F + +R+V +W S++ A +G G++++ F M++ G+R
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIR 360
Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
PNE++F+SVL C GL++EG +++ M+++ GI P HY +VDL GRAG L+ AL
Sbjct: 361 PNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALR 419
Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
I +MP++P A W ALLNACRM+KNTE+G A+ + EL+ + G +V+L NIYA
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479
Query: 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKL 367
W+ VR+ MK GVKK P CS +E++ +H F A DE HP+ EI E+ ++K
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKE 539
Query: 368 AGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDV 427
GYV +T+ V+ ++++E+E L HSEK+A+AF L++ G I I KN+RVC DCH
Sbjct: 540 LGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTA 599
Query: 428 TKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
K+ SKV REIIVRD NRFHHFK+G CSCK YW
Sbjct: 600 IKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 4/255 (1%)
Query: 14 VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73
+ I D+V +++ AKCG ++ ARK+F++MP+RD + W +++GY+Q + +A
Sbjct: 86 ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145
Query: 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133
L F+ M NE ++ SV+ A G H + + V +G+AL+D+
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 205
Query: 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193
Y++ G M+ A F ++ RN +W ++I G A EK+LELF M + G RP+ ++
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265
Query: 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKM 252
S+ C G +E+G+ M + E + G L+D+Y ++G + +A + +++
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSG--EKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323
Query: 253 PMKPHAGAWGALLNA 267
K +W +LL A
Sbjct: 324 -AKRDVVSWNSLLTA 337
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER 153
++L CT L QGR H +I ++ + + +G L++MY+KCG++ +A F M +R
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL-------RGCCVVGL- 205
+ TWT++I G + + +L F+ M + G PNE T SV+ RGCC L
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184
Query: 206 ---VEEGREHFDSMRREYGIEPWLEHYG-CLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
V+ G FDS H G L+DLY R G +D+A V + + + +W
Sbjct: 185 GFCVKCG---FDSN----------VHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-SW 230
Query: 262 GALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLL 298
AL+ TE EL L + +H +Y L
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASL 268
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/455 (42%), Positives = 282/455 (61%), Gaps = 13/455 (2%)
Query: 9 GYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68
G C K G + +V + I+ KCG V+ R++FDEMP + I WNA+++GY+Q G
Sbjct: 180 GQCVK---GGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNG 236
Query: 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128
+ + L L+ M+ V + ++VSVLS+C HLGA G +E N V +
Sbjct: 237 LAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSN 296
Query: 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188
A + MY++CGN+ KA F M +++ +WT++IG M+G GE L LF M + G+RP
Sbjct: 297 ASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRP 356
Query: 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248
+ FV VL C GL ++G E F +M+REY +EP EHY CLVDL GRAGRLDEA++
Sbjct: 357 DGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEF 416
Query: 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308
I MP++P WGALL AC+++KN +M ELA K++E E N G YVL+SNIY++SKN
Sbjct: 417 IESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQ 476
Query: 309 DRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI-SRRLKL 367
+ + +R +M+ + +K PG S +E VH F AGD +H + E+ ML E+ + ++L
Sbjct: 477 EGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMEL 536
Query: 368 AGYVANTNPVMYDIEE-EEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHD 426
AG + D + EE T +HSE++AIAFG+++ G I ++KNLRVC DCH
Sbjct: 537 AGNM--------DCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHV 588
Query: 427 VTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
K +SK+ +R+ +VRD +RFH+FK+G CSCK YW
Sbjct: 589 FLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 7/303 (2%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIA--WNAMLAGYAQCGKSREALHLF 77
EP V+ TA+IS KCG V ARK+F+E P+ ++ +NA+++GY K +A ++F
Sbjct: 87 EPFVL--TALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMF 144
Query: 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
M+ V ++ V+M+ ++ CT L GR H + L V + + + MY KC
Sbjct: 145 RRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKC 204
Query: 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197
G++ F M + + TW +VI G + NG LEL+ MK +GV P+ T VSVL
Sbjct: 205 GSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVL 264
Query: 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH 257
C +G + G E + G P + + +Y R G L +A V + MP+K
Sbjct: 265 SSCAHLGAKKIGHE-VGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSL 323
Query: 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA-YVLLSNIYAESKNWDRVINVRQ 316
+W A++ M+ E+G + +++ + GA +V++ + + S D+ + + +
Sbjct: 324 V-SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFR 382
Query: 317 IMK 319
MK
Sbjct: 383 AMK 385
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 6/214 (2%)
Query: 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116
WN L A E++ L+ M + S +L +C L G+ H ++
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT--WTSVIGGLAMNGAGEKS 174
+ + + TAL+ MY KCG + A F + + + + ++I G N +
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLV 233
+F MK+ GV + VT + ++ C V + GR H ++ G++ + +
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSFI 198
Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNA 267
+Y + G ++ + ++MP+K W A+++
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLI-TWNAVISG 231
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 45/261 (17%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA G L + VF D MP + ++W AM
Sbjct: 301 MYARCGNLAKARAVF-------------------------------DIMPVKSLVSWTAM 329
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-R 119
+ Y G L LF M ++ + V VLSAC+H G D+G ++R +
Sbjct: 330 IGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK 389
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLEL- 177
L+ + LVD+ + G +++AM+F M E + W +++G ++ K++++
Sbjct: 390 LEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH----KNVDMA 445
Query: 178 -FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE-----PWLEHYGC 231
+ K PN + + ++ +EG M RE ++EH G
Sbjct: 446 ELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG- 504
Query: 232 LVDLYGRAGRLDEALDVINKM 252
V L+ R E + +++M
Sbjct: 505 RVHLFLAGDRSHEQTEEVHRM 525
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/447 (42%), Positives = 279/447 (62%), Gaps = 8/447 (1%)
Query: 19 HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
++ D+ + ++ KCGD+ A+ FD +P D +AW M++G + G+ A H+F
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFS 607
Query: 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT----LGTALVDMY 134
M++ V +E ++ ++ A + L AL+QGR H N LK+ T +GT+LVDMY
Sbjct: 608 QMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA----NALKLNCTNDPFVGTSLVDMY 663
Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194
+KCG+++ A F ++ N+ W +++ GLA +G G+++L+LF MK G++P++VTF+
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723
Query: 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
VL C GLV E +H SM +YGI+P +EHY CL D GRAG + +A ++I M M
Sbjct: 724 GVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSM 783
Query: 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314
+ A + LL ACR+ +TE G+ + KL+ELE + AYVLLSN+YA + WD +
Sbjct: 784 EASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLA 843
Query: 315 RQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374
R +MK VKK PG S IEV ++H F D ++ + I + ++ R +K GYV T
Sbjct: 844 RTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPET 903
Query: 375 NPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKV 434
+ + D+EEEEKE L HSEK+A+AFGL+S PIR++KNLRVC DCH+ K I+KV
Sbjct: 904 DFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKV 963
Query: 435 FNREIIVRDRNRFHHFKEGKCSCKGYW 461
+NREI++RD NRFH FK+G CSC YW
Sbjct: 964 YNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 130/250 (52%), Gaps = 15/250 (6%)
Query: 22 DVVCQTAMISA-----CAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL 76
D TA+I A C K ++ R FD +AWNAM+AGY Q + L L
Sbjct: 451 DSFVSTALIDAYSRNRCMKEAEILFERHNFD------LVAWNAMMAGYTQSHDGHKTLKL 504
Query: 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
F LM + ++ ++ +V C L A++QG+ H Y ++ + + + + ++DMY K
Sbjct: 505 FALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVK 564
Query: 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
CG+M+ A F + + WT++I G NG E++ +FS M+ GV P+E T ++
Sbjct: 565 CGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATL 624
Query: 197 LRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
+ + +E+GR+ H ++++ +P++ LVD+Y + G +D+A + ++ M
Sbjct: 625 AKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM 682
Query: 256 PHAGAWGALL 265
+ AW A+L
Sbjct: 683 -NITAWNAML 691
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 132/249 (53%), Gaps = 8/249 (3%)
Query: 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
+ ++I+ K AR +FD M ERD I+WN+++AG AQ G EA+ LF +
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409
Query: 83 HDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVY-IERNRLKMTVTLGTALVDMYSKCGNM 140
+K ++ +M SVL A + L L + HV+ I+ N + + + TAL+D YS+ M
Sbjct: 410 CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF-VSTALIDAYSRNRCM 468
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200
+A + + ++ W +++ G + G K+L+LF+LM + G R ++ T +V + C
Sbjct: 469 KEA-EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC 527
Query: 201 CVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
+ + +G++ H +++ Y ++ W+ ++D+Y + G + A + +P+ P
Sbjct: 528 GFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDV 584
Query: 260 AWGALLNAC 268
AW +++ C
Sbjct: 585 AWTTMISGC 593
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 8 LGYCQ--KVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA 65
LG C ++ P+ +IS +KCG + AR++FD+MP+RD ++WN++LA YA
Sbjct: 57 LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 66 QCGKS-----REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
Q + ++A LF +++ V + +++ +L C H G + H Y + L
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ ALV++Y K G + + F M R+V W ++ G E++++L S
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 236
Query: 181 MKQAGVRPNEVTF 193
+G+ PNE+T
Sbjct: 237 FHSSGLNPNEITL 249
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 4/190 (2%)
Query: 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
N L+ Y G+ L F M DV+ ++V+ + +L+ + +L G+ H +
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
L + +T+ +L++MY K A F M ER++ +W SVI G+A NG +++ L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVV--GLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235
F + + G++P++ T SVL+ + GL + H +++ + ++ L+D
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVS--TALIDA 461
Query: 236 YGRAGRLDEA 245
Y R + EA
Sbjct: 462 YSRNRCMKEA 471
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/435 (41%), Positives = 274/435 (62%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
TA++ AKCG + A ++F+ M ++ + W++M+AGY Q EAL L+ Q ++
Sbjct: 201 TALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLE 260
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
N+ ++ SV+ AC++L AL +G+ H I ++ V + ++ VDMY+KCG++ ++
Sbjct: 261 QNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYII 320
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
F ++E+N+ W ++I G A + ++ + LF M+Q G+ PNEVTF S+L C GLV
Sbjct: 321 FSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLV 380
Query: 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
EEGR F MR YG+ P + HY C+VD+ GRAG L EA ++I +P P A WG+LL
Sbjct: 381 EEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLA 440
Query: 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKL 326
+CR+YKN E+ E+A+ KL ELE +N G +VLLSNIYA +K W+ + R++++ VKK+
Sbjct: 441 SCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKV 500
Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
G S I++ +VH F G+ HPR EI L + + + GY + ++D+E +K
Sbjct: 501 RGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKK 560
Query: 387 EDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNR 446
E+ L +HSEK+A+ FGL+ L E P+RI+KNLR+C DCH+ K S R IIVRD NR
Sbjct: 561 EELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNR 620
Query: 447 FHHFKEGKCSCKGYW 461
FHHF +G CSC +W
Sbjct: 621 FHHFSDGHCSCGDFW 635
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
E DV +I+A +KCG V+LAR++FD M ER ++WN M+ Y + EAL +F
Sbjct: 93 EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152
Query: 80 MQIHDVKLNEVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
M+ K +E ++ SVLSAC + AL+ + H + + + + +GTAL+D+Y+KCG
Sbjct: 153 MRNEGFKFSEFTISSVLSACGVNCDALECKKL-HCLSVKTCIDLNLYVGTALLDLYAKCG 211
Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
+ A+ F M++++ TW+S++ G N E++L L+ ++ + N+ T SV+
Sbjct: 212 MIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC 271
Query: 199 GCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255
C + + EG++ H + +G ++ VD+Y + G L E+ + +++ K
Sbjct: 272 ACSNLAALIEGKQMHAVICKSGFGSNVFVASSA--VDMYAKCGSLRESYIIFSEVQEK 327
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 6/224 (2%)
Query: 95 VLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154
+L C GA+ + + H I R L+ VTL L++ YSKCG + A F GM ER+
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV-VGLVEEGREHF 213
+ +W ++IG N ++L++F M+ G + +E T SVL C V +E + H
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 214 DSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN 273
S++ + ++ L+DLY + G + +A+ V M K W +++ KN
Sbjct: 187 LSVKTCIDLNLYVG--TALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSMVAGYVQNKN 243
Query: 274 TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
E L R+ + + + LS++ N +I +Q+
Sbjct: 244 YEEALLLYRRAQRMSLEQN--QFTLSSVICACSNLAALIEGKQM 285
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
+V ++ + AKCG + + +F E+ E++ WN +++G+A+ + +E + LF MQ
Sbjct: 297 NVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQ 356
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCGNM 140
+ NEV+ S+LS C H G +++GR + L V + +VD+ + G +
Sbjct: 357 QDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLL 416
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
++A + +K S+ G L + K+LEL
Sbjct: 417 SEAYEL---IKSIPFDPTASIWGSLLASCRVYKNLEL 450
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/464 (42%), Positives = 288/464 (62%), Gaps = 3/464 (0%)
Query: 1 MYAELGCLGYCQKVFD--GIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
MY+ G + +++ + G + + TA++ K GD++ A+ +F + +RD +AW
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382
Query: 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118
AM+ GY Q G EA++LF M + N ++ ++LS + L +L G+ H ++
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442
Query: 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLEL 177
+V++ AL+ MY+K GN+ A F ++ ER+ +WTS+I LA +G E++LEL
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502
Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237
F M G+RP+ +T+V V C GLV +GR++FD M+ I P L HY C+VDL+G
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562
Query: 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297
RAG L EA + I KMP++P WG+LL+ACR++KN ++G++A+ +L+ LE +N GAY
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSA 622
Query: 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVM 357
L+N+Y+ W+ +R+ MK VKK G S IEV +VH F D THP NEI +
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMT 682
Query: 358 LGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKN 417
+ +I +K GYV +T V++D+EEE KE L HSEK+AIAFGLIS + +RI+KN
Sbjct: 683 MKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKN 742
Query: 418 LRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
LRVC DCH K ISK+ REIIVRD RFHHFK+G CSC+ YW
Sbjct: 743 LRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 167/358 (46%), Gaps = 43/358 (12%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+Y++ G + +K+FD + ++SA +K GD+D + FD++P+RD ++W M
Sbjct: 58 VYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTM 117
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+ GY G+ +A+ + M ++ + ++ +VL++ ++ G+ H +I + L
Sbjct: 118 IVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGL 177
Query: 121 KMTVTLGTALVDMYSKCGN-------------------------------MNKAMDFFWG 149
+ V++ +L++MY+KCG+ M+ AM F
Sbjct: 178 RGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQ 237
Query: 150 MKERNVYTWTSVIGGLAMNGAGEKSLELFS-LMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208
M ER++ TW S+I G G ++L++FS +++ + + P+ T SVL C + +
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 209 GRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP-HAGAWGALLN 266
G++ H + + I + L+ +Y R G ++ A +I + K + ALL+
Sbjct: 298 GKQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLD 355
Query: 267 ACRMYKNTEMGELASRK--LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
++G++ K V L+ ++ A+ + Y + ++ IN+ + M G
Sbjct: 356 GY-----IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 121/292 (41%), Gaps = 43/292 (14%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYA 65
+ + + D + PD +++SACA + + +++ + + I NA+++ Y+
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325
Query: 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125
+CG A L D+K+
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGF----------------------------------- 350
Query: 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185
TAL+D Y K G+MN+A + F +K+R+V WT++I G +G+ +++ LF M G
Sbjct: 351 --TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408
Query: 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245
RPN T ++L + + G++ S + I + L+ +Y +AG + A
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSA 467
Query: 246 LDVINKMPMKPHAGAWGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYV 296
+ + + +W +++ A + + E EL L+E +H YV
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYV 519
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/445 (43%), Positives = 273/445 (61%), Gaps = 5/445 (1%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSREALHLFHLM 80
+ + A+I+ KCG++D K+F M ER D + WN+M++GY +AL L M
Sbjct: 551 EATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFM 610
Query: 81 QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140
+L+ +VLSA + L++G H R L+ V +G+ALVDMYSKCG +
Sbjct: 611 LQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRL 670
Query: 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRG 199
+ A+ FF M RN Y+W S+I G A +G GE++L+LF MK G P+ VTFV VL
Sbjct: 671 DYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSA 730
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
C GL+EEG +HF+SM YG+ P +EH+ C+ D+ GRAG LD+ D I KMPMKP+
Sbjct: 731 CSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVL 790
Query: 260 AWGALLNAC--RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317
W +L AC + E+G+ A+ L +LE +N YVLL N+YA W+ ++ R+
Sbjct: 791 IWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKK 850
Query: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377
MK VKK G S + + VH F AGD++HP + I L E++R+++ AGYV T
Sbjct: 851 MKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFA 910
Query: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEG-VPIRIVKNLRVCWDCHDVTKMISKVFN 436
+YD+E+E KE+ L HSEK+A+AF L + + +PIRI+KNLRVC DCH K ISK+
Sbjct: 911 LYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEG 970
Query: 437 REIIVRDRNRFHHFKEGKCSCKGYW 461
R+II+RD NRFHHF++G CSC +W
Sbjct: 971 RQIILRDSNRFHHFQDGACSCSDFW 995
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 15/294 (5%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
+ DV +I+A + GD ARK+FDEMP R+ ++W +++GY++ G+ +EAL
Sbjct: 33 DKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRD 92
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQ--GRWAHVYIERNRLKMTVTLGTALVDMYSKC 137
M + N+ + VSVL AC +G++ GR H + + + + L+ MY KC
Sbjct: 93 MVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKC 152
Query: 138 -GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196
G++ A+ F ++ +N +W S+I + G + +FS M+ G RP E TF S+
Sbjct: 153 IGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSL 212
Query: 197 LRGCCVVGLVEEGREHFDSMR---REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253
+ C L E + + ++ G+ L LV + ++G L A V N+M
Sbjct: 213 VTTAC--SLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQME 270
Query: 254 MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK---NHGAYVLLSNIYAE 304
+ G ++ R + GE A++ +++ + + +YV+L + + E
Sbjct: 271 TRNAVTLNGLMVGLVRQ----KWGEEATKLFMDMNSMIDVSPESYVILLSSFPE 320
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 126/253 (49%), Gaps = 11/253 (4%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D+ + ++SA AK G + ARK+F++M R+ + N ++ G + EA LF M
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301
Query: 82 IHDVKLNEVSMVSVLSACTHLG-----ALDQGRWAHVY-IERNRLKMTVTLGTALVDMYS 135
+ ++ S V +LS+ L +GR H + I + V +G LV+MY+
Sbjct: 302 SM-IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYA 360
Query: 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVS 195
KCG++ A F+ M +++ +W S+I GL NG +++E + M++ + P T +S
Sbjct: 361 KCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLIS 420
Query: 196 VLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254
L C + + G++ H +S++ GI+ + L+ LY G L+E + + MP
Sbjct: 421 SLSSCASLKWAKLGQQIHGESLK--LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPE 478
Query: 255 KPHAGAWGALLNA 267
+W +++ A
Sbjct: 479 HDQV-SWNSIIGA 490
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 7/269 (2%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
+A+LG + + + GI + +V A+++ A+ G ++ RK+F MPE D ++WN+++
Sbjct: 430 WAKLGQQIHGESLKLGI-DLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSII 488
Query: 62 AGYAQCGKS-REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
A+ +S EA+ F Q KLN ++ SVLSA + L + G+ H +N +
Sbjct: 489 GALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNI 548
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMNGAGEKSLELFS 179
T AL+ Y KCG M+ F M E R+ TW S+I G N K+L+L
Sbjct: 549 ADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVW 608
Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGR 238
M Q G R + + +VL V +E G E H S+R +E + LVD+Y +
Sbjct: 609 FMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRA--CLESDVVVGSALVDMYSK 666
Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNA 267
GRLD AL N MP++ ++ +W ++++
Sbjct: 667 CGRLDYALRFFNTMPVR-NSYSWNSMISG 694
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 10/246 (4%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
+++ AKCG + AR++F M ++D ++WN+M+ G Q G EA+ + M+ HD+
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
+++S LS+C L G+ H + + + V++ AL+ +Y++ G +N+
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLE----LFSLMKQAGVRPNEVTFVSVLRGCCV 202
F M E + +W S+IG LA + E+SL F ++AG + N +TF SVL
Sbjct: 473 FSSMPEHDQVSWNSIIGALARS---ERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSS 529
Query: 203 VGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
+ E G++ H +++ E E+ L+ YG+ G +D + ++M + W
Sbjct: 530 LSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKCGEMDGCEKIFSRMAERRDNVTW 587
Query: 262 GALLNA 267
++++
Sbjct: 588 NSMISG 593
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
E DVV +A++ +KCG +D A + F+ MP R+ +WN+M++GYA+ G+ EAL LF
Sbjct: 651 ESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFET 710
Query: 80 MQIH-DVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIERNRLKMTVTLGTALVDMYSKC 137
M++ + V+ V VLSAC+H G L++G + + L + + + D+ +
Sbjct: 711 MKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRA 770
Query: 138 GNMNKAMDFFWGMKER-NVYTWTSVIGG 164
G ++K DF M + NV W +V+G
Sbjct: 771 GELDKLEDFIEKMPMKPNVLIWRTVLGA 798
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
N V + V S H GA R+ H + +NRL V L L++ Y + G+ A F
Sbjct: 3 NCVPLSFVQSCVGHRGA---ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVF 59
Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
M RN +W ++ G + NG +++L M + G+ N+ FVSVLR C +G V
Sbjct: 60 DEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/459 (41%), Positives = 275/459 (59%), Gaps = 16/459 (3%)
Query: 5 LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGY 64
GCLG + T ++ K G++ A +F+ M +D +AWNA LA
Sbjct: 140 FGCLG--------------IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVC 185
Query: 65 AQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV 124
Q G S AL F+ M V+ + ++VS+LSAC LG+L+ G + + + +
Sbjct: 186 VQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNI 245
Query: 125 TLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184
+ A +DM+ KCGN A F MK+RNV +W+++I G AMNG ++L LF+ M+
Sbjct: 246 IVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNE 305
Query: 185 GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM--RREYGIEPWLEHYGCLVDLYGRAGRL 242
G+RPN VTF+ VL C GLV EG+ +F M + +EP EHY C+VDL GR+G L
Sbjct: 306 GLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLL 365
Query: 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302
+EA + I KMP++P G WGALL AC ++++ +G+ + LVE +VLLSNIY
Sbjct: 366 EEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIY 425
Query: 303 AESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEIS 362
A + WD V VR M+ G KK+ S +E + ++H F GD++HP+ I L EI
Sbjct: 426 AAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEIL 485
Query: 363 RRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCW 422
++++ GYV +T V +D+E EEKE +L HSEK+AIAFGLI + G PIR++KNLR C
Sbjct: 486 KKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCD 545
Query: 423 DCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
DCH +K +S + + EII+RD+NRFHHF+ G CSCK +W
Sbjct: 546 DCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 3 AELGCLGYCQKVFDGIHEPDVVC----QTAMISACAKCGDVDLARKMFDEMPERDPIAWN 58
+LG L ++++D + ++ C + A + KCG+ + AR +F+EM +R+ ++W+
Sbjct: 221 GQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWS 280
Query: 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG-RWAHVYIER 117
M+ GYA G SREAL LF MQ ++ N V+ + VLSAC+H G +++G R+ + ++
Sbjct: 281 TMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQS 340
Query: 118 N--RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMN 168
N L+ +VD+ + G + +A +F M E + W +++G A++
Sbjct: 341 NDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVH 394
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86
T ++ GD+ AR++FDEM + WN + GY + E+L L+ M+ V+
Sbjct: 47 TQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVR 106
Query: 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146
+E + V+ A + LG G H ++ + + T LV MY K G ++ A
Sbjct: 107 PDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFL 166
Query: 147 FWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206
F M+ +++ W + + G +LE F+ M V+ + T VS+L C +G +
Sbjct: 167 FESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSL 226
Query: 207 EEGREHFDSMRRE 219
E G E +D R+E
Sbjct: 227 EIGEEIYDRARKE 239
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 16/178 (8%)
Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
Q + H + R +L T L++ G+M A F M + ++ W ++ G
Sbjct: 26 QLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYV 85
Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226
N +SL L+ M+ GVRP+E T+ V++ +G G + +YG
Sbjct: 86 RNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFA-LHAHVVKYG----- 139
Query: 227 EHYGC-------LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMG 277
+GC LV +Y + G L A + M +K AW A L C N+ +
Sbjct: 140 --FGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLV-AWNAFLAVCVQTGNSAIA 194
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/443 (41%), Positives = 277/443 (62%), Gaps = 1/443 (0%)
Query: 19 HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78
++ DV ++++ AKCG++ ARKMFDEMP+R+ + W+ M+ GYAQ G++ EAL LF
Sbjct: 147 YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFK 206
Query: 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138
++ +N+ S SV+S C + L+ GR H ++ + +G++LV +YSKCG
Sbjct: 207 EALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCG 266
Query: 139 NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198
A F + +N+ W +++ A + +K +ELF MK +G++PN +TF++VL
Sbjct: 267 VPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLN 326
Query: 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
C GLV+EGR +FD M+ E IEP +HY LVD+ GRAGRL EAL+VI MP+ P
Sbjct: 327 ACSHAGLVDEGRYYFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTE 385
Query: 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
WGALL +C ++KNTE+ A+ K+ EL + G ++ LSN YA ++ R+++
Sbjct: 386 SVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLL 445
Query: 319 KAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVM 378
+ +G KK G S +E +VH F AG+ H + EI L E+ ++ AGY+A+T+ V+
Sbjct: 446 RDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVL 505
Query: 379 YDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNRE 438
+++ +EK T+ HSE++AIAFGLI+ PIR++KNLRVC DCH+ K +S R
Sbjct: 506 REVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRV 565
Query: 439 IIVRDRNRFHHFKEGKCSCKGYW 461
IIVRD NRFH F++GKCSC YW
Sbjct: 566 IIVRDNNRFHRFEDGKCSCNDYW 588
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 2/234 (0%)
Query: 42 ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101
+R+ F++ P++ W+++++ +AQ +L M +++ ++ + S +C
Sbjct: 69 SRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAI 128
Query: 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161
L D GR H + V +G++LVDMY+KCG + A F M +RNV TW+ +
Sbjct: 129 LSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGM 188
Query: 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG 221
+ G A G E++L LF + N+ +F SV+ C L+E GR+ + +
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQ-IHGLSIKSS 247
Query: 222 IEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275
+ LV LY + G + A V N++P+K + G W A+L A + +T+
Sbjct: 248 FDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVK-NLGIWNAMLKAYAQHSHTQ 300
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166
+G H Y+ ++ L + + L++ YSK + F +++ TW+S+I A
Sbjct: 33 KGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFA 92
Query: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPW 225
N SLE M +RP++ S + C ++ + GR H SM+ Y + +
Sbjct: 93 QNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVF 152
Query: 226 LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278
+ LVD+Y + G + A + ++MP + + W + MY +MGE
Sbjct: 153 VG--SSLVDMYAKCGEIVYARKMFDEMPQR-NVVTWSGM-----MYGYAQMGE 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,345,546
Number of Sequences: 539616
Number of extensions: 7108128
Number of successful extensions: 21767
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 15843
Number of HSP's gapped (non-prelim): 2342
length of query: 461
length of database: 191,569,459
effective HSP length: 121
effective length of query: 340
effective length of database: 126,275,923
effective search space: 42933813820
effective search space used: 42933813820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)