Query 012539
Match_columns 461
No_of_seqs 614 out of 3394
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3E-101 6E-106 791.2 50.6 460 2-461 199-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.9E-94 4.1E-99 757.6 51.0 455 2-459 399-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 3.9E-57 8.4E-62 475.3 24.6 446 2-454 162-677 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.9E-54 4.2E-59 444.8 33.4 420 2-439 133-559 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.7E-53 5.9E-58 439.8 38.0 431 2-440 447-912 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.7E-51 8E-56 423.9 38.2 362 2-376 416-791 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 4.1E-30 8.9E-35 197.2 8.3 106 328-451 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-21 7.8E-26 205.7 36.5 315 2-323 543-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 8.4E-21 1.8E-25 202.9 36.4 314 2-322 509-833 (899)
10 PRK11788 tetratricopeptide rep 99.9 5E-21 1.1E-25 184.8 31.4 294 30-329 42-355 (389)
11 PRK11788 tetratricopeptide rep 99.9 3.7E-20 8.1E-25 178.7 30.5 280 3-286 46-346 (389)
12 TIGR00990 3a0801s09 mitochondr 99.8 9.6E-18 2.1E-22 170.7 36.0 314 2-320 137-570 (615)
13 PRK15174 Vi polysaccharide exp 99.8 1.4E-17 3E-22 169.3 34.8 312 3-322 53-382 (656)
14 KOG4626 O-linked N-acetylgluco 99.8 5.4E-19 1.2E-23 165.0 18.9 309 5-321 129-451 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 4.2E-18 9.2E-23 159.1 23.2 311 2-320 160-484 (966)
16 PRK15174 Vi polysaccharide exp 99.8 9.4E-17 2E-21 163.2 32.7 291 27-322 46-348 (656)
17 PRK11447 cellulose synthase su 99.8 7E-16 1.5E-20 167.3 35.3 312 2-320 279-665 (1157)
18 PRK11447 cellulose synthase su 99.8 8.8E-16 1.9E-20 166.5 32.2 312 2-322 313-701 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.8 5.3E-15 1.2E-19 150.7 35.7 291 26-322 130-497 (615)
20 PRK10049 pgaA outer membrane p 99.7 2.3E-14 5.1E-19 148.8 37.8 316 3-322 26-423 (765)
21 PRK10049 pgaA outer membrane p 99.7 1.7E-14 3.7E-19 149.8 35.7 317 2-321 59-456 (765)
22 PRK09782 bacteriophage N4 rece 99.7 1.7E-13 3.6E-18 143.1 33.5 311 3-323 387-742 (987)
23 KOG2076 RNA polymerase III tra 99.7 2.5E-13 5.3E-18 133.0 30.2 315 2-319 150-510 (895)
24 PF13429 TPR_15: Tetratricopep 99.6 1.1E-15 2.5E-20 140.1 11.4 256 59-319 13-275 (280)
25 PRK09782 bacteriophage N4 rece 99.6 1.9E-12 4.2E-17 135.2 36.4 309 6-322 356-707 (987)
26 PRK14574 hmsH outer membrane p 99.6 1.7E-12 3.6E-17 133.0 35.2 159 163-321 300-479 (822)
27 PRK10747 putative protoheme IX 99.6 2.5E-12 5.4E-17 123.6 29.2 276 35-320 96-389 (398)
28 PRK14574 hmsH outer membrane p 99.6 1.2E-11 2.6E-16 126.9 35.3 189 133-321 301-513 (822)
29 KOG1126 DNA-binding cell divis 99.6 4.4E-13 9.6E-18 127.4 23.0 277 37-323 333-622 (638)
30 PRK10747 putative protoheme IX 99.6 1.1E-11 2.5E-16 119.0 32.6 277 5-288 97-391 (398)
31 TIGR00540 hemY_coli hemY prote 99.6 2.1E-11 4.5E-16 117.8 32.7 279 35-318 96-396 (409)
32 KOG2003 TPR repeat-containing 99.6 3.2E-12 6.9E-17 116.1 24.8 302 2-307 286-709 (840)
33 PF13429 TPR_15: Tetratricopep 99.5 4.7E-14 1E-18 129.4 11.4 251 28-286 13-276 (280)
34 KOG1155 Anaphase-promoting com 99.5 4.2E-11 9.1E-16 109.3 28.0 252 63-320 236-494 (559)
35 TIGR00540 hemY_coli hemY prote 99.5 4E-11 8.7E-16 115.8 29.7 278 5-285 97-397 (409)
36 KOG1126 DNA-binding cell divis 99.5 4.7E-12 1E-16 120.5 21.7 274 8-292 335-625 (638)
37 KOG4422 Uncharacterized conser 99.5 1E-10 2.2E-15 105.8 26.9 304 14-323 198-553 (625)
38 KOG0547 Translocase of outer m 99.5 6.4E-11 1.4E-15 108.8 25.3 212 103-320 340-565 (606)
39 TIGR02521 type_IV_pilW type IV 99.4 6.4E-11 1.4E-15 105.3 23.9 198 122-320 29-231 (234)
40 KOG4422 Uncharacterized conser 99.4 1.7E-10 3.7E-15 104.4 26.0 240 53-323 206-464 (625)
41 COG2956 Predicted N-acetylgluc 99.4 2.1E-10 4.5E-15 100.3 25.2 288 36-331 48-357 (389)
42 KOG4318 Bicoid mRNA stability 99.4 1.6E-11 3.5E-16 120.0 18.7 268 75-382 11-279 (1088)
43 KOG1173 Anaphase-promoting com 99.4 6.1E-10 1.3E-14 104.4 27.7 262 53-320 243-517 (611)
44 KOG1155 Anaphase-promoting com 99.4 9.7E-10 2.1E-14 100.6 27.2 287 21-322 162-462 (559)
45 KOG1915 Cell cycle control pro 99.4 1.2E-09 2.7E-14 100.2 27.7 296 30-330 148-509 (677)
46 PRK12370 invasion protein regu 99.4 4.7E-10 1E-14 112.6 26.8 261 53-323 255-537 (553)
47 KOG2002 TPR-containing nuclear 99.4 2.9E-10 6.3E-15 112.7 24.3 212 2-217 317-557 (1018)
48 PF13041 PPR_2: PPR repeat fam 99.3 3.3E-12 7.2E-17 83.1 6.8 50 52-101 1-50 (50)
49 PF13041 PPR_2: PPR repeat fam 99.3 4.1E-12 8.9E-17 82.7 6.8 50 153-202 1-50 (50)
50 COG3071 HemY Uncharacterized e 99.3 9.7E-09 2.1E-13 92.7 30.4 275 36-320 97-389 (400)
51 TIGR02521 type_IV_pilW type IV 99.3 9.4E-10 2E-14 97.7 24.5 193 54-251 31-228 (234)
52 COG3071 HemY Uncharacterized e 99.3 3.9E-09 8.5E-14 95.2 27.7 251 67-322 97-358 (400)
53 KOG1840 Kinesin light chain [C 99.3 1E-09 2.2E-14 105.6 25.1 232 89-320 199-478 (508)
54 COG2956 Predicted N-acetylgluc 99.3 4E-09 8.7E-14 92.4 26.1 217 69-289 50-280 (389)
55 KOG2003 TPR repeat-containing 99.3 2.1E-09 4.6E-14 98.0 24.9 316 2-320 247-688 (840)
56 KOG2002 TPR-containing nuclear 99.3 2.3E-09 5E-14 106.5 26.9 333 3-335 210-607 (1018)
57 KOG0495 HAT repeat protein [RN 99.3 1.1E-08 2.5E-13 97.5 29.1 294 32-335 593-892 (913)
58 KOG0495 HAT repeat protein [RN 99.3 1.4E-08 3E-13 96.9 29.5 312 2-320 416-781 (913)
59 PRK12370 invasion protein regu 99.3 1.2E-09 2.6E-14 109.7 24.1 257 21-288 254-536 (553)
60 KOG1129 TPR repeat-containing 99.2 6.7E-10 1.5E-14 97.2 16.2 225 93-322 227-459 (478)
61 KOG2076 RNA polymerase III tra 99.2 3.9E-08 8.4E-13 97.3 29.7 287 33-321 149-478 (895)
62 KOG1840 Kinesin light chain [C 99.2 5E-09 1.1E-13 100.9 23.3 231 56-286 201-478 (508)
63 KOG1129 TPR repeat-containing 99.2 1.5E-09 3.2E-14 95.1 17.4 229 58-291 227-462 (478)
64 PRK11189 lipoprotein NlpI; Pro 99.2 7.1E-09 1.5E-13 95.5 22.0 146 68-216 40-191 (296)
65 PRK11189 lipoprotein NlpI; Pro 99.2 3.2E-08 6.9E-13 91.2 25.6 89 127-217 67-159 (296)
66 KOG1174 Anaphase-promoting com 99.2 4.4E-08 9.6E-13 88.7 25.1 267 20-292 229-505 (564)
67 KOG1915 Cell cycle control pro 99.1 3.2E-07 7E-12 84.6 30.1 322 4-334 153-546 (677)
68 KOG0547 Translocase of outer m 99.1 6E-08 1.3E-12 89.7 24.6 288 28-321 120-491 (606)
69 KOG1173 Anaphase-promoting com 99.1 1.6E-07 3.4E-12 88.6 25.1 273 22-297 243-528 (611)
70 PF12569 NARP1: NMDA receptor- 99.0 2E-07 4.3E-12 91.1 25.5 96 228-323 196-293 (517)
71 KOG1174 Anaphase-promoting com 99.0 1.2E-06 2.5E-11 79.7 27.8 261 52-320 230-499 (564)
72 PF12569 NARP1: NMDA receptor- 99.0 9.4E-07 2E-11 86.4 28.9 285 29-320 10-333 (517)
73 KOG4318 Bicoid mRNA stability 99.0 4.4E-08 9.5E-13 96.6 19.0 85 153-241 202-286 (1088)
74 KOG1125 TPR repeat-containing 99.0 2.7E-08 5.9E-13 93.9 16.6 219 99-320 295-526 (579)
75 COG3063 PilF Tfp pilus assembl 99.0 4.7E-07 1E-11 76.2 21.8 184 56-245 37-226 (250)
76 COG3063 PilF Tfp pilus assembl 99.0 4E-07 8.7E-12 76.6 21.3 197 92-292 38-241 (250)
77 cd05804 StaR_like StaR_like; a 99.0 3E-06 6.6E-11 80.7 30.7 297 23-322 6-337 (355)
78 PF04733 Coatomer_E: Coatomer 99.0 4.7E-08 1E-12 88.9 16.9 204 36-251 14-226 (290)
79 KOG1070 rRNA processing protei 98.9 1.7E-07 3.6E-12 96.7 21.4 209 112-325 1447-1667(1710)
80 KOG0624 dsRNA-activated protei 98.9 3.5E-06 7.6E-11 74.9 26.8 294 23-322 38-371 (504)
81 PF04733 Coatomer_E: Coatomer 98.9 8.6E-08 1.9E-12 87.2 17.3 244 63-321 10-265 (290)
82 KOG2047 mRNA splicing factor [ 98.9 4.5E-06 9.7E-11 80.1 27.3 309 4-316 114-535 (835)
83 KOG4340 Uncharacterized conser 98.9 1.5E-06 3.3E-11 75.7 21.4 284 26-317 13-335 (459)
84 KOG4162 Predicted calmodulin-b 98.8 3.7E-06 7.9E-11 82.4 25.7 125 195-322 655-784 (799)
85 KOG0624 dsRNA-activated protei 98.8 9.3E-06 2E-10 72.3 25.6 286 3-294 49-377 (504)
86 KOG3785 Uncharacterized conser 98.8 1.3E-05 2.7E-10 71.7 26.0 313 2-322 67-491 (557)
87 cd05804 StaR_like StaR_like; a 98.8 3.1E-05 6.8E-10 73.7 30.9 267 54-322 6-294 (355)
88 KOG2047 mRNA splicing factor [ 98.7 7.7E-05 1.7E-09 71.9 31.0 193 125-319 388-613 (835)
89 KOG1156 N-terminal acetyltrans 98.7 6.8E-05 1.5E-09 72.4 29.4 313 4-322 53-435 (700)
90 KOG1125 TPR repeat-containing 98.7 1.2E-06 2.6E-11 83.0 17.2 210 3-216 296-524 (579)
91 PRK04841 transcriptional regul 98.7 3.6E-05 7.9E-10 83.0 31.2 318 5-322 387-761 (903)
92 PF12854 PPR_1: PPR repeat 98.7 3.6E-08 7.8E-13 57.6 4.5 33 18-50 2-34 (34)
93 KOG2376 Signal recognition par 98.7 5.3E-05 1.2E-09 72.3 27.5 114 2-120 22-141 (652)
94 TIGR03302 OM_YfiO outer membra 98.7 3.3E-06 7.2E-11 75.3 18.8 182 122-321 31-232 (235)
95 KOG3616 Selective LIM binding 98.6 7.6E-06 1.6E-10 79.6 21.5 193 97-316 740-932 (1636)
96 PF12854 PPR_1: PPR repeat 98.6 6.8E-08 1.5E-12 56.4 4.4 33 119-151 2-34 (34)
97 KOG1070 rRNA processing protei 98.6 1.6E-05 3.4E-10 82.8 23.7 238 77-318 1447-1697(1710)
98 PLN02789 farnesyltranstransfer 98.6 4.4E-05 9.6E-10 70.5 24.6 231 56-319 39-300 (320)
99 KOG4162 Predicted calmodulin-b 98.6 0.00015 3.1E-09 71.6 28.2 199 21-219 321-542 (799)
100 TIGR03302 OM_YfiO outer membra 98.6 9.5E-06 2.1E-10 72.3 19.0 182 87-289 31-234 (235)
101 PRK10370 formate-dependent nit 98.6 8.1E-06 1.7E-10 70.2 17.5 119 203-323 52-175 (198)
102 PRK04841 transcriptional regul 98.6 0.00032 6.9E-09 75.8 33.7 319 3-321 352-720 (903)
103 KOG0548 Molecular co-chaperone 98.5 3.5E-05 7.6E-10 72.8 21.7 317 3-321 13-455 (539)
104 KOG1128 Uncharacterized conser 98.5 3.9E-05 8.4E-10 75.0 22.2 212 23-252 398-613 (777)
105 KOG2376 Signal recognition par 98.5 0.00016 3.5E-09 69.1 25.7 142 170-317 356-516 (652)
106 KOG1128 Uncharacterized conser 98.5 6.6E-06 1.4E-10 80.2 16.5 188 120-322 394-583 (777)
107 PRK14720 transcript cleavage f 98.5 5.3E-05 1.1E-09 78.1 23.8 234 21-303 29-268 (906)
108 PLN02789 farnesyltranstransfer 98.5 0.00027 5.9E-09 65.4 26.3 209 24-238 38-267 (320)
109 PRK15359 type III secretion sy 98.5 7.1E-06 1.5E-10 66.7 14.0 120 176-302 14-136 (144)
110 PRK10370 formate-dependent nit 98.5 3E-05 6.6E-10 66.6 18.5 116 67-184 52-173 (198)
111 KOG4340 Uncharacterized conser 98.5 0.0001 2.2E-09 64.6 21.1 309 4-320 90-442 (459)
112 PRK15179 Vi polysaccharide bio 98.4 3.4E-05 7.3E-10 78.5 21.1 159 153-322 84-246 (694)
113 KOG1156 N-terminal acetyltrans 98.4 0.00029 6.3E-09 68.2 25.1 259 57-320 11-282 (700)
114 KOG3617 WD40 and TPR repeat-co 98.4 0.00011 2.4E-09 72.7 22.6 164 100-285 811-994 (1416)
115 PRK15359 type III secretion sy 98.4 1.6E-05 3.5E-10 64.6 14.4 21 61-81 31-51 (144)
116 KOG0548 Molecular co-chaperone 98.4 0.00027 5.8E-09 67.0 23.2 285 31-321 10-421 (539)
117 PRK15179 Vi polysaccharide bio 98.3 0.00015 3.3E-09 73.9 23.2 143 120-266 82-230 (694)
118 COG5010 TadD Flp pilus assembl 98.3 0.0001 2.2E-09 63.6 17.8 151 161-314 72-224 (257)
119 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.6E-11 51.8 4.4 35 55-89 1-35 (35)
120 COG5010 TadD Flp pilus assembl 98.3 0.00035 7.6E-09 60.4 20.8 155 93-252 70-228 (257)
121 KOG0985 Vesicle coat protein c 98.3 0.00095 2.1E-08 67.9 26.5 158 138-318 1089-1246(1666)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.1E-05 6.7E-10 73.0 15.8 118 59-181 174-294 (395)
123 KOG3616 Selective LIM binding 98.3 0.00021 4.5E-09 70.0 21.4 287 3-322 672-1025(1636)
124 COG4783 Putative Zn-dependent 98.3 0.00014 3E-09 68.3 19.2 177 139-320 252-436 (484)
125 KOG3081 Vesicle coat complex C 98.3 0.0021 4.5E-08 55.8 24.3 70 241-310 188-259 (299)
126 KOG0985 Vesicle coat protein c 98.3 0.00081 1.8E-08 68.4 24.9 280 6-320 1062-1369(1666)
127 KOG1127 TPR repeat-containing 98.2 0.00012 2.5E-09 74.1 18.9 75 244-319 801-877 (1238)
128 TIGR00756 PPR pentatricopeptid 98.2 1.9E-06 4E-11 51.0 4.2 34 156-189 1-34 (35)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.4E-05 1.2E-09 71.5 15.9 127 126-256 171-298 (395)
130 COG4783 Putative Zn-dependent 98.2 0.00081 1.8E-08 63.2 22.9 147 154-322 305-455 (484)
131 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.2E-11 49.8 4.4 34 54-87 1-34 (34)
132 KOG3081 Vesicle coat complex C 98.2 0.00083 1.8E-08 58.2 20.5 251 31-292 16-276 (299)
133 PRK15363 pathogenicity island 98.2 7E-05 1.5E-09 60.2 13.1 95 226-320 35-131 (157)
134 TIGR02552 LcrH_SycD type III s 98.1 4.5E-05 9.8E-10 61.4 11.6 96 226-321 17-114 (135)
135 TIGR02552 LcrH_SycD type III s 98.1 0.00011 2.4E-09 59.0 13.8 91 92-183 20-113 (135)
136 PF13812 PPR_3: Pentatricopept 98.1 5.2E-06 1.1E-10 48.7 4.3 33 156-188 2-34 (34)
137 KOG3060 Uncharacterized conser 98.1 0.001 2.2E-08 57.3 19.0 165 130-299 58-232 (289)
138 KOG3785 Uncharacterized conser 98.1 0.0002 4.3E-09 64.3 15.3 185 28-216 290-487 (557)
139 PRK14720 transcript cleavage f 98.0 0.0013 2.9E-08 68.0 22.5 219 53-323 30-254 (906)
140 PF09976 TPR_21: Tetratricopep 98.0 0.00062 1.4E-08 55.4 15.9 122 57-180 15-143 (145)
141 KOG3617 WD40 and TPR repeat-co 98.0 0.00095 2.1E-08 66.4 19.3 251 21-319 724-994 (1416)
142 KOG1914 mRNA cleavage and poly 98.0 0.017 3.8E-07 55.2 28.4 118 206-325 347-468 (656)
143 PF07079 DUF1347: Protein of u 97.9 0.017 3.6E-07 54.2 25.2 72 246-318 444-521 (549)
144 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3E-10 45.7 3.4 31 55-85 1-31 (31)
145 cd00189 TPR Tetratricopeptide 97.9 0.00018 3.8E-09 53.1 10.0 92 229-320 3-96 (100)
146 PF09976 TPR_21: Tetratricopep 97.9 0.0015 3.4E-08 53.1 15.8 114 168-283 24-143 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00042 9.1E-09 54.1 12.0 99 195-293 7-111 (119)
148 PF01535 PPR: PPR repeat; Int 97.8 2.1E-05 4.5E-10 44.9 3.2 29 157-185 2-30 (31)
149 KOG3060 Uncharacterized conser 97.8 0.017 3.8E-07 49.9 22.0 180 68-252 26-217 (289)
150 PF12895 Apc3: Anaphase-promot 97.8 3.7E-05 8.1E-10 56.0 4.6 77 240-317 3-83 (84)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00043 9.4E-09 54.0 11.1 96 227-322 3-106 (119)
152 KOG1127 TPR repeat-containing 97.8 0.0051 1.1E-07 62.8 20.4 156 126-286 494-658 (1238)
153 PF04840 Vps16_C: Vps16, C-ter 97.7 0.037 8E-07 51.2 27.1 110 192-318 179-288 (319)
154 KOG2053 Mitochondrial inherita 97.7 0.039 8.4E-07 56.1 25.6 214 35-252 21-252 (932)
155 cd00189 TPR Tetratricopeptide 97.7 0.00061 1.3E-08 50.1 10.3 91 57-149 3-93 (100)
156 PF05843 Suf: Suppressor of fo 97.7 0.0018 3.9E-08 59.1 15.0 134 156-292 2-141 (280)
157 PF13414 TPR_11: TPR repeat; P 97.7 0.00016 3.4E-09 50.4 6.4 64 257-320 2-66 (69)
158 PRK10153 DNA-binding transcrip 97.7 0.0031 6.8E-08 62.4 17.5 62 259-321 421-482 (517)
159 KOG0550 Molecular chaperone (D 97.7 0.0019 4.2E-08 59.4 14.5 256 59-322 54-351 (486)
160 PF14938 SNAP: Soluble NSF att 97.6 0.0037 8E-08 57.2 16.7 118 199-316 123-261 (282)
161 PRK02603 photosystem I assembl 97.6 0.002 4.3E-08 54.2 13.8 130 53-204 34-165 (172)
162 KOG2053 Mitochondrial inherita 97.6 0.037 8.1E-07 56.2 24.2 223 64-291 19-259 (932)
163 PRK15363 pathogenicity island 97.6 0.0016 3.6E-08 52.4 12.3 106 43-150 23-129 (157)
164 KOG2796 Uncharacterized conser 97.6 0.0094 2E-07 51.7 17.3 168 25-194 138-323 (366)
165 PF14938 SNAP: Soluble NSF att 97.6 0.0077 1.7E-07 55.1 18.4 132 127-259 117-269 (282)
166 PF12688 TPR_5: Tetratrico pep 97.6 0.0035 7.6E-08 48.7 13.3 109 58-166 5-117 (120)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00015 3.4E-09 52.7 5.5 80 67-148 2-82 (84)
168 PF08579 RPM2: Mitochondrial r 97.6 0.0019 4.2E-08 48.4 11.1 81 56-136 27-116 (120)
169 KOG1130 Predicted G-alpha GTPa 97.6 0.00061 1.3E-08 62.5 9.8 257 63-320 26-343 (639)
170 CHL00033 ycf3 photosystem I as 97.6 0.0027 5.8E-08 53.2 13.4 81 54-135 35-117 (168)
171 PRK02603 photosystem I assembl 97.6 0.0012 2.5E-08 55.6 11.1 94 227-320 36-148 (172)
172 PLN03088 SGT1, suppressor of 97.5 0.00063 1.4E-08 64.4 10.1 103 196-301 8-113 (356)
173 PF13432 TPR_16: Tetratricopep 97.5 0.00032 7E-09 48.1 6.1 57 265-321 4-60 (65)
174 COG4235 Cytochrome c biogenesi 97.5 0.0011 2.5E-08 58.8 10.8 106 223-328 153-263 (287)
175 KOG1914 mRNA cleavage and poly 97.5 0.038 8.2E-07 53.0 21.0 123 126-252 368-498 (656)
176 KOG1538 Uncharacterized conser 97.5 0.0097 2.1E-07 58.0 17.4 207 25-253 558-800 (1081)
177 PF05843 Suf: Suppressor of fo 97.5 0.0044 9.6E-08 56.5 14.9 127 55-183 2-135 (280)
178 PF08579 RPM2: Mitochondrial r 97.5 0.0022 4.8E-08 48.0 10.3 81 157-238 27-116 (120)
179 CHL00033 ycf3 photosystem I as 97.5 0.0014 3E-08 55.0 10.6 93 226-318 35-139 (168)
180 PLN03088 SGT1, suppressor of 97.5 0.0019 4.1E-08 61.2 12.6 102 161-266 8-111 (356)
181 PF10037 MRP-S27: Mitochondria 97.5 0.0014 3E-08 62.4 11.3 114 23-136 66-185 (429)
182 COG4700 Uncharacterized protei 97.4 0.035 7.6E-07 45.8 17.1 98 86-183 86-188 (251)
183 PRK10866 outer membrane biogen 97.4 0.047 1E-06 48.6 19.8 190 51-252 29-238 (243)
184 KOG0553 TPR repeat-containing 97.4 0.00061 1.3E-08 60.2 7.5 97 199-298 90-189 (304)
185 PRK10866 outer membrane biogen 97.4 0.089 1.9E-06 46.9 22.9 177 88-285 31-239 (243)
186 PF13432 TPR_16: Tetratricopep 97.3 0.00094 2E-08 45.7 6.7 61 232-292 3-65 (65)
187 PRK10153 DNA-binding transcrip 97.3 0.016 3.5E-07 57.5 17.6 68 190-260 420-488 (517)
188 PF14559 TPR_19: Tetratricopep 97.3 0.00036 7.9E-09 48.3 4.3 53 269-321 2-54 (68)
189 PF04840 Vps16_C: Vps16, C-ter 97.3 0.16 3.4E-06 47.1 23.1 104 159-280 181-284 (319)
190 KOG0553 TPR repeat-containing 97.3 0.0028 6.1E-08 56.1 10.1 99 163-266 89-190 (304)
191 PF10037 MRP-S27: Mitochondria 97.3 0.0082 1.8E-07 57.3 13.9 119 85-203 62-186 (429)
192 PF06239 ECSIT: Evolutionarily 97.3 0.0036 7.7E-08 53.0 10.2 96 43-138 34-152 (228)
193 PF06239 ECSIT: Evolutionarily 97.2 0.0038 8.1E-08 52.9 10.1 97 144-241 34-153 (228)
194 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.9E-08 46.2 6.5 58 266-323 3-60 (73)
195 PRK15331 chaperone protein Sic 97.1 0.0063 1.4E-07 49.4 10.0 89 232-320 43-133 (165)
196 COG3898 Uncharacterized membra 97.1 0.25 5.5E-06 45.7 24.0 281 26-320 85-391 (531)
197 PF13525 YfiO: Outer membrane 97.1 0.17 3.7E-06 43.8 19.2 179 57-244 8-196 (203)
198 PF12688 TPR_5: Tetratrico pep 97.0 0.021 4.5E-07 44.4 12.0 91 161-251 7-100 (120)
199 PF13281 DUF4071: Domain of un 97.0 0.15 3.1E-06 47.9 19.4 160 129-291 146-338 (374)
200 COG4700 Uncharacterized protei 97.0 0.15 3.3E-06 42.2 16.8 131 186-319 85-220 (251)
201 PF13414 TPR_11: TPR repeat; P 97.0 0.002 4.2E-08 44.7 5.5 64 226-289 3-69 (69)
202 KOG2041 WD40 repeat protein [G 96.9 0.39 8.4E-06 47.8 21.7 57 187-253 849-905 (1189)
203 COG3898 Uncharacterized membra 96.9 0.35 7.6E-06 44.8 28.3 268 38-316 68-353 (531)
204 PF14559 TPR_19: Tetratricopep 96.9 0.0048 1E-07 42.6 6.8 48 168-216 4-51 (68)
205 PF13525 YfiO: Outer membrane 96.9 0.11 2.3E-06 45.0 16.5 166 27-209 9-197 (203)
206 PF13431 TPR_17: Tetratricopep 96.8 0.00086 1.9E-08 39.0 2.1 33 281-313 2-34 (34)
207 PRK10803 tol-pal system protei 96.8 0.013 2.8E-07 52.6 10.6 93 228-320 145-245 (263)
208 KOG2280 Vacuolar assembly/sort 96.8 0.66 1.4E-05 46.7 24.5 296 5-317 450-795 (829)
209 KOG2796 Uncharacterized conser 96.7 0.2 4.2E-06 43.9 15.8 230 54-290 69-318 (366)
210 KOG2041 WD40 repeat protein [G 96.6 0.92 2E-05 45.3 23.8 67 6-77 748-819 (1189)
211 PRK10803 tol-pal system protei 96.5 0.057 1.2E-06 48.5 12.5 101 192-292 145-251 (263)
212 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.014 2.9E-07 55.4 8.5 96 226-324 75-177 (453)
213 PF12921 ATP13: Mitochondrial 96.5 0.043 9.4E-07 43.0 10.0 79 156-234 3-96 (126)
214 PF13371 TPR_9: Tetratricopept 96.4 0.012 2.5E-07 41.3 6.2 61 234-294 3-65 (73)
215 PF13428 TPR_14: Tetratricopep 96.4 0.0064 1.4E-07 37.8 4.2 42 259-300 2-43 (44)
216 KOG1538 Uncharacterized conser 96.4 0.58 1.3E-05 46.2 18.8 255 54-323 556-848 (1081)
217 PF03704 BTAD: Bacterial trans 96.4 0.14 3E-06 41.5 13.1 73 156-229 63-139 (146)
218 PF03704 BTAD: Bacterial trans 96.3 0.021 4.5E-07 46.5 7.9 61 260-320 64-124 (146)
219 COG4235 Cytochrome c biogenesi 96.3 0.095 2.1E-06 46.9 12.1 100 190-291 156-260 (287)
220 PF09205 DUF1955: Domain of un 96.2 0.41 8.8E-06 37.3 16.3 141 165-324 12-152 (161)
221 KOG0550 Molecular chaperone (D 96.2 0.86 1.9E-05 42.7 18.0 162 87-252 166-347 (486)
222 PF13424 TPR_12: Tetratricopep 96.2 0.015 3.3E-07 41.4 5.7 25 192-216 48-72 (78)
223 PF12921 ATP13: Mitochondrial 96.1 0.061 1.3E-06 42.2 9.2 95 189-301 1-97 (126)
224 KOG2280 Vacuolar assembly/sort 96.1 1.9 4.2E-05 43.5 21.5 246 21-283 505-795 (829)
225 PF13424 TPR_12: Tetratricopep 95.8 0.022 4.8E-07 40.5 5.0 61 260-320 7-74 (78)
226 PF04053 Coatomer_WDAD: Coatom 95.7 0.71 1.5E-05 45.0 16.3 158 63-253 270-429 (443)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.62 1.4E-05 44.5 15.2 64 53-118 74-141 (453)
228 COG3118 Thioredoxin domain-con 95.6 0.74 1.6E-05 41.3 14.6 137 31-169 142-286 (304)
229 PRK15331 chaperone protein Sic 95.6 0.18 4E-06 41.1 10.1 94 56-151 39-132 (165)
230 KOG3941 Intermediate in Toll s 95.6 0.14 3E-06 45.2 9.8 98 42-139 53-173 (406)
231 COG0457 NrfG FOG: TPR repeat [ 95.5 1.4 3.1E-05 37.9 27.4 191 126-320 61-264 (291)
232 KOG0543 FKBP-type peptidyl-pro 95.4 0.2 4.4E-06 46.7 11.0 119 31-151 216-353 (397)
233 KOG0543 FKBP-type peptidyl-pro 95.4 0.21 4.6E-06 46.5 11.1 138 162-321 215-355 (397)
234 KOG1130 Predicted G-alpha GTPa 95.4 0.33 7.2E-06 45.2 12.0 254 32-286 26-343 (639)
235 KOG3941 Intermediate in Toll s 95.3 0.17 3.7E-06 44.7 9.4 99 143-242 53-174 (406)
236 COG0457 NrfG FOG: TPR repeat [ 95.3 1.7 3.7E-05 37.4 24.3 219 68-290 37-268 (291)
237 PF13512 TPR_18: Tetratricopep 95.1 0.82 1.8E-05 36.4 12.0 57 162-219 17-76 (142)
238 COG3118 Thioredoxin domain-con 95.1 2.5 5.4E-05 38.0 18.4 140 97-240 142-286 (304)
239 PF07079 DUF1347: Protein of u 95.0 3.4 7.4E-05 39.4 19.0 274 4-291 18-331 (549)
240 PF13281 DUF4071: Domain of un 95.0 3.4 7.3E-05 39.0 19.7 28 225-252 304-331 (374)
241 KOG1941 Acetylcholine receptor 94.8 0.83 1.8E-05 42.0 12.6 49 267-315 215-269 (518)
242 PF10300 DUF3808: Protein of u 94.8 2.9 6.2E-05 41.4 17.7 158 93-252 192-373 (468)
243 PRK09687 putative lyase; Provi 94.7 3.4 7.3E-05 37.7 26.7 61 20-80 34-98 (280)
244 COG1729 Uncharacterized protei 94.6 0.41 8.9E-06 42.4 10.1 94 158-252 145-241 (262)
245 COG5107 RNA14 Pre-mRNA 3'-end 94.6 1.6 3.4E-05 41.5 14.1 144 89-237 397-546 (660)
246 PF08631 SPO22: Meiosis protei 94.6 3.6 7.8E-05 37.5 23.5 60 91-151 86-148 (278)
247 PF13512 TPR_18: Tetratricopep 94.4 1.1 2.3E-05 35.8 11.2 56 237-292 21-81 (142)
248 KOG2610 Uncharacterized conser 94.4 1.7 3.6E-05 39.7 13.5 112 137-252 116-235 (491)
249 PF10300 DUF3808: Protein of u 94.4 2.7 5.8E-05 41.6 16.5 161 158-321 191-376 (468)
250 COG5107 RNA14 Pre-mRNA 3'-end 94.4 2.2 4.7E-05 40.6 14.6 235 23-271 302-548 (660)
251 smart00299 CLH Clathrin heavy 94.4 2.1 4.6E-05 34.2 14.5 42 94-136 12-53 (140)
252 KOG1920 IkappaB kinase complex 94.4 8.9 0.00019 41.2 21.3 25 58-82 794-820 (1265)
253 PF04053 Coatomer_WDAD: Coatom 94.2 0.93 2E-05 44.2 12.5 151 5-180 274-427 (443)
254 PRK11906 transcriptional regul 94.1 3.1 6.7E-05 40.0 15.4 157 156-316 252-431 (458)
255 KOG1585 Protein required for f 94.1 3.8 8.2E-05 35.8 17.0 200 91-315 33-250 (308)
256 COG4105 ComL DNA uptake lipopr 94.0 4.1 8.8E-05 36.0 16.0 177 124-321 35-233 (254)
257 KOG2066 Vacuolar assembly/sort 94.0 8.4 0.00018 39.4 22.6 146 4-155 368-536 (846)
258 PRK11906 transcriptional regul 93.8 1.4 3.1E-05 42.3 12.6 117 205-321 273-401 (458)
259 PF04184 ST7: ST7 protein; In 93.8 6.8 0.00015 38.0 16.9 143 60-216 174-321 (539)
260 KOG1258 mRNA processing protei 93.6 8.2 0.00018 38.3 27.2 179 126-307 299-490 (577)
261 COG4649 Uncharacterized protei 93.6 1.3 2.9E-05 36.3 10.2 135 54-189 59-201 (221)
262 smart00299 CLH Clathrin heavy 93.6 3.1 6.8E-05 33.3 15.3 39 130-168 13-54 (140)
263 PF00515 TPR_1: Tetratricopept 93.6 0.15 3.3E-06 29.2 3.8 32 259-290 2-33 (34)
264 KOG4555 TPR repeat-containing 93.5 0.95 2.1E-05 35.2 8.9 89 235-323 52-146 (175)
265 PF07719 TPR_2: Tetratricopept 93.2 0.27 5.8E-06 28.0 4.5 32 260-291 3-34 (34)
266 COG3629 DnrI DNA-binding trans 93.1 0.5 1.1E-05 42.5 8.0 61 260-320 155-215 (280)
267 COG1729 Uncharacterized protei 93.0 2 4.4E-05 38.1 11.5 100 192-292 144-249 (262)
268 COG3629 DnrI DNA-binding trans 93.0 0.78 1.7E-05 41.3 9.1 72 26-97 156-235 (280)
269 PF02259 FAT: FAT domain; Int 92.9 8.4 0.00018 36.3 19.7 148 153-303 144-303 (352)
270 PF13428 TPR_14: Tetratricopep 92.8 0.5 1.1E-05 29.1 5.5 29 55-83 2-30 (44)
271 KOG4555 TPR repeat-containing 92.7 2.6 5.7E-05 32.9 10.2 51 133-183 52-105 (175)
272 PF13170 DUF4003: Protein of u 92.7 3.7 7.9E-05 37.7 13.3 92 140-234 119-225 (297)
273 PF13176 TPR_7: Tetratricopept 92.7 0.29 6.4E-06 28.6 4.2 26 56-81 1-26 (36)
274 PF09205 DUF1955: Domain of un 92.6 4 8.7E-05 32.0 14.7 65 157-223 88-152 (161)
275 COG4105 ComL DNA uptake lipopr 92.6 6.9 0.00015 34.6 17.7 51 164-215 176-229 (254)
276 KOG2610 Uncharacterized conser 92.6 1.4 3.1E-05 40.1 9.9 159 167-328 115-283 (491)
277 KOG2114 Vacuolar assembly/sort 92.4 9.7 0.00021 39.3 16.4 177 92-284 337-516 (933)
278 COG4785 NlpI Lipoprotein NlpI, 92.2 6.8 0.00015 33.6 14.7 31 293-323 238-268 (297)
279 PF07035 Mic1: Colon cancer-as 92.2 5.9 0.00013 32.7 15.6 57 229-286 92-148 (167)
280 KOG1920 IkappaB kinase complex 92.1 13 0.00028 40.1 17.3 112 131-253 915-1026(1265)
281 PF09613 HrpB1_HrpK: Bacterial 92.0 5.8 0.00013 32.4 12.5 87 201-290 21-109 (160)
282 PF04184 ST7: ST7 protein; In 92.0 13 0.00028 36.3 18.0 98 194-291 263-379 (539)
283 PF13176 TPR_7: Tetratricopept 91.9 0.43 9.3E-06 27.9 4.2 25 157-181 1-25 (36)
284 KOG1941 Acetylcholine receptor 91.6 9.7 0.00021 35.4 14.0 41 35-75 18-64 (518)
285 KOG0890 Protein kinase of the 91.5 33 0.00072 40.1 22.9 64 259-324 1671-1734(2382)
286 PF00515 TPR_1: Tetratricopept 91.5 0.48 1E-05 27.0 4.1 28 55-82 2-29 (34)
287 PF10602 RPN7: 26S proteasome 91.3 5.6 0.00012 33.4 11.9 58 126-183 38-101 (177)
288 KOG4570 Uncharacterized conser 90.8 1.2 2.6E-05 40.2 7.4 92 24-119 65-165 (418)
289 PF13431 TPR_17: Tetratricopep 90.7 0.44 9.6E-06 27.5 3.3 30 114-144 4-33 (34)
290 PRK11619 lytic murein transgly 90.7 23 0.00049 36.7 27.8 301 4-319 45-373 (644)
291 KOG1586 Protein required for f 90.6 11 0.00023 32.9 13.1 24 268-291 164-187 (288)
292 KOG0276 Vesicle coat complex C 90.5 2.2 4.9E-05 42.0 9.6 148 5-180 599-746 (794)
293 PF10602 RPN7: 26S proteasome 90.3 5 0.00011 33.7 10.7 63 55-117 37-101 (177)
294 KOG4234 TPR repeat-containing 90.2 1.2 2.6E-05 37.5 6.5 88 235-322 104-198 (271)
295 PF13181 TPR_8: Tetratricopept 90.1 0.68 1.5E-05 26.3 3.9 31 260-290 3-33 (34)
296 PF07719 TPR_2: Tetratricopept 89.4 0.93 2E-05 25.7 4.1 28 55-82 2-29 (34)
297 PF02259 FAT: FAT domain; Int 89.3 19 0.00042 33.8 18.4 68 256-323 144-215 (352)
298 PF09613 HrpB1_HrpK: Bacterial 89.0 3.5 7.6E-05 33.6 8.3 54 238-291 22-77 (160)
299 TIGR02561 HrpB1_HrpK type III 88.9 3.3 7.2E-05 33.2 7.9 53 270-322 22-74 (153)
300 KOG1464 COP9 signalosome, subu 88.0 19 0.00041 32.1 17.2 261 19-286 22-331 (440)
301 TIGR02508 type_III_yscG type I 87.2 10 0.00022 28.1 9.3 87 105-195 21-107 (115)
302 KOG0276 Vesicle coat complex C 87.0 14 0.0003 36.9 12.2 150 135-317 597-746 (794)
303 PF13374 TPR_10: Tetratricopep 86.8 1.7 3.7E-05 25.9 4.4 28 55-82 3-30 (42)
304 PF02284 COX5A: Cytochrome c o 86.8 5 0.00011 29.8 7.1 60 173-234 28-87 (108)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 86.6 6.1 0.00013 29.0 7.4 63 170-234 22-84 (103)
306 PF02284 COX5A: Cytochrome c o 86.3 5.2 0.00011 29.7 7.0 55 245-299 32-86 (108)
307 PRK15180 Vi polysaccharide bio 86.1 13 0.00029 35.8 11.4 140 201-344 300-441 (831)
308 TIGR02508 type_III_yscG type I 86.0 6 0.00013 29.3 7.1 59 31-92 47-105 (115)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 85.7 5.5 0.00012 29.2 6.8 51 249-299 33-83 (103)
310 PF00637 Clathrin: Region in C 85.0 0.97 2.1E-05 36.4 3.2 52 61-112 14-65 (143)
311 PF11207 DUF2989: Protein of u 84.7 8.7 0.00019 32.7 8.7 21 225-245 177-197 (203)
312 PF11207 DUF2989: Protein of u 84.5 11 0.00024 32.1 9.2 74 100-175 118-198 (203)
313 PF04097 Nic96: Nup93/Nic96; 84.5 53 0.0012 33.9 22.2 89 233-325 421-535 (613)
314 PF13374 TPR_10: Tetratricopep 84.4 2.8 6E-05 24.9 4.5 27 156-182 3-29 (42)
315 PF07035 Mic1: Colon cancer-as 84.1 23 0.00049 29.4 14.4 132 74-216 14-146 (167)
316 PF13181 TPR_8: Tetratricopept 84.1 2 4.4E-05 24.2 3.5 27 56-82 3-29 (34)
317 KOG2114 Vacuolar assembly/sort 84.1 58 0.0013 34.1 18.1 191 58-271 338-535 (933)
318 PRK09687 putative lyase; Provi 83.9 34 0.00074 31.2 28.1 229 44-290 27-266 (280)
319 KOG4648 Uncharacterized conser 83.8 2.6 5.6E-05 38.6 5.5 107 198-311 105-214 (536)
320 COG1747 Uncharacterized N-term 83.7 47 0.001 32.7 23.3 167 127-300 69-247 (711)
321 PF08631 SPO22: Meiosis protei 83.2 36 0.00078 31.0 25.2 17 301-317 255-271 (278)
322 PF00637 Clathrin: Region in C 83.1 0.46 9.9E-06 38.3 0.5 53 96-148 14-66 (143)
323 COG2976 Uncharacterized protei 83.1 28 0.0006 29.5 15.4 89 97-185 97-189 (207)
324 KOG2396 HAT (Half-A-TPR) repea 83.0 49 0.0011 32.4 22.4 239 72-319 300-557 (568)
325 KOG4234 TPR repeat-containing 82.8 9.2 0.0002 32.4 7.9 57 62-119 103-164 (271)
326 PRK13800 putative oxidoreducta 82.4 80 0.0017 34.4 26.7 254 44-319 625-879 (897)
327 KOG1258 mRNA processing protei 81.9 59 0.0013 32.6 18.7 179 21-201 295-486 (577)
328 PF13174 TPR_6: Tetratricopept 81.5 3 6.6E-05 23.2 3.6 24 267-290 9-32 (33)
329 PF10345 Cohesin_load: Cohesin 81.5 69 0.0015 33.1 25.8 193 21-216 28-251 (608)
330 KOG1586 Protein required for f 81.5 36 0.00078 29.8 17.0 57 235-291 163-228 (288)
331 KOG4648 Uncharacterized conser 81.4 5.5 0.00012 36.6 6.7 86 162-258 104-198 (536)
332 PF14853 Fis1_TPR_C: Fis1 C-te 81.4 12 0.00026 24.2 6.7 50 295-370 4-53 (53)
333 PF07721 TPR_4: Tetratricopept 81.1 2.3 4.9E-05 22.6 2.7 23 294-316 3-25 (26)
334 KOG4570 Uncharacterized conser 80.7 20 0.00042 32.8 9.7 96 119-218 59-163 (418)
335 PF07721 TPR_4: Tetratricopept 80.3 3.8 8.3E-05 21.7 3.4 20 129-148 6-25 (26)
336 KOG2396 HAT (Half-A-TPR) repea 79.6 66 0.0014 31.6 17.0 237 41-290 300-563 (568)
337 COG4649 Uncharacterized protei 79.2 36 0.00078 28.3 14.9 130 89-219 59-196 (221)
338 PF06552 TOM20_plant: Plant sp 79.1 24 0.00053 29.4 9.1 45 274-325 96-140 (186)
339 PF09477 Type_III_YscG: Bacter 79.1 25 0.00054 26.5 8.7 86 104-193 21-106 (116)
340 PF13170 DUF4003: Protein of u 78.8 54 0.0012 30.2 15.3 52 171-222 78-135 (297)
341 COG3947 Response regulator con 78.7 8.1 0.00018 34.8 6.6 56 265-320 286-341 (361)
342 COG2976 Uncharacterized protei 78.4 41 0.00088 28.6 14.7 127 157-290 56-191 (207)
343 COG4785 NlpI Lipoprotein NlpI, 78.3 44 0.00096 28.9 14.9 158 54-218 99-265 (297)
344 PRK12798 chemotaxis protein; R 78.0 67 0.0014 30.8 22.2 180 137-319 125-322 (421)
345 smart00028 TPR Tetratricopepti 78.0 4.9 0.00011 21.4 3.8 24 265-288 8-31 (34)
346 TIGR02561 HrpB1_HrpK type III 77.7 36 0.00077 27.5 10.7 65 202-269 22-88 (153)
347 KOG2034 Vacuolar sorting prote 76.9 1.1E+02 0.0023 32.5 21.3 71 2-77 368-438 (911)
348 PF14853 Fis1_TPR_C: Fis1 C-te 76.8 9.9 0.00021 24.5 5.1 30 264-293 7-36 (53)
349 PF13174 TPR_6: Tetratricopept 76.2 3.8 8.3E-05 22.7 2.9 28 294-321 2-29 (33)
350 COG4455 ImpE Protein of avirul 76.0 13 0.00029 32.0 6.9 73 229-301 4-81 (273)
351 PRK15180 Vi polysaccharide bio 74.9 21 0.00045 34.6 8.6 121 167-291 301-424 (831)
352 cd08819 CARD_MDA5_2 Caspase ac 74.2 9.1 0.0002 27.5 4.7 35 36-71 49-83 (88)
353 KOG3364 Membrane protein invol 73.6 25 0.00055 27.8 7.4 48 273-320 50-99 (149)
354 PF07163 Pex26: Pex26 protein; 73.2 54 0.0012 29.6 10.2 87 61-147 90-181 (309)
355 PF06552 TOM20_plant: Plant sp 73.2 54 0.0012 27.5 11.0 29 173-203 53-82 (186)
356 TIGR03504 FimV_Cterm FimV C-te 73.0 10 0.00022 23.3 4.2 24 60-83 5-28 (44)
357 PF14669 Asp_Glu_race_2: Putat 72.2 52 0.0011 27.9 9.2 58 93-150 136-207 (233)
358 KOG4642 Chaperone-dependent E3 71.8 11 0.00024 32.9 5.6 52 267-318 53-104 (284)
359 PRK10941 hypothetical protein; 71.5 21 0.00045 32.3 7.6 62 260-321 183-244 (269)
360 PF04097 Nic96: Nup93/Nic96; 71.4 45 0.00097 34.4 11.0 31 226-256 500-535 (613)
361 TIGR03504 FimV_Cterm FimV C-te 70.6 11 0.00024 23.2 3.9 23 161-183 5-27 (44)
362 PF10579 Rapsyn_N: Rapsyn N-te 70.0 13 0.00027 26.3 4.5 47 202-248 18-65 (80)
363 PF09670 Cas_Cas02710: CRISPR- 69.8 1E+02 0.0022 29.6 12.3 54 164-218 140-197 (379)
364 PF10366 Vps39_1: Vacuolar sor 66.9 54 0.0012 24.9 8.0 27 157-183 41-67 (108)
365 KOG4279 Serine/threonine prote 66.1 99 0.0022 32.1 11.4 184 56-291 203-399 (1226)
366 PF13762 MNE1: Mitochondrial s 66.1 51 0.0011 26.6 7.9 76 26-101 42-127 (145)
367 PHA02875 ankyrin repeat protei 66.1 62 0.0013 31.4 10.5 73 4-77 11-88 (413)
368 PF13762 MNE1: Mitochondrial s 65.9 69 0.0015 25.8 10.5 50 154-203 78-128 (145)
369 COG1747 Uncharacterized N-term 65.9 1.5E+02 0.0032 29.5 19.8 91 56-151 68-158 (711)
370 PF11768 DUF3312: Protein of u 64.8 1.1E+02 0.0025 30.5 11.5 54 129-182 413-471 (545)
371 PF10366 Vps39_1: Vacuolar sor 64.6 55 0.0012 24.8 7.6 55 27-82 3-67 (108)
372 PF13929 mRNA_stabil: mRNA sta 64.5 1.1E+02 0.0025 27.8 11.9 111 39-149 144-263 (292)
373 KOG1308 Hsp70-interacting prot 63.8 5.7 0.00012 36.5 2.5 57 268-324 158-214 (377)
374 PF07163 Pex26: Pex26 protein; 63.1 95 0.0021 28.1 9.7 86 162-250 90-182 (309)
375 KOG1550 Extracellular protein 62.8 1.8E+02 0.004 29.6 23.1 271 39-321 228-538 (552)
376 KOG4077 Cytochrome c oxidase, 62.5 51 0.0011 25.8 6.9 59 173-233 67-125 (149)
377 COG3947 Response regulator con 62.4 28 0.0006 31.5 6.3 67 126-192 281-355 (361)
378 smart00386 HAT HAT (Half-A-TPR 61.8 15 0.00032 20.0 3.3 29 272-300 1-29 (33)
379 PF14669 Asp_Glu_race_2: Putat 61.5 1E+02 0.0022 26.2 12.8 58 195-252 137-207 (233)
380 PF10345 Cohesin_load: Cohesin 60.6 2.1E+02 0.0046 29.6 20.1 191 52-252 28-251 (608)
381 PF10579 Rapsyn_N: Rapsyn N-te 60.6 36 0.00077 24.1 5.3 47 167-213 18-66 (80)
382 PF14561 TPR_20: Tetratricopep 60.4 24 0.00051 25.8 4.8 43 279-321 9-51 (90)
383 PF11846 DUF3366: Domain of un 59.6 35 0.00075 29.0 6.6 35 255-289 141-175 (193)
384 KOG4077 Cytochrome c oxidase, 59.6 51 0.0011 25.7 6.5 56 244-299 70-125 (149)
385 KOG4567 GTPase-activating prot 59.4 1.3E+02 0.0028 27.7 9.9 73 175-253 263-345 (370)
386 KOG1550 Extracellular protein 59.4 2.1E+02 0.0046 29.2 16.4 178 140-325 228-430 (552)
387 PF09477 Type_III_YscG: Bacter 58.9 68 0.0015 24.3 6.8 50 32-83 49-98 (116)
388 cd08326 CARD_CASP9 Caspase act 58.2 18 0.0004 25.9 3.8 43 31-73 38-80 (84)
389 PF11838 ERAP1_C: ERAP1-like C 57.6 1.6E+02 0.0035 27.2 17.7 84 204-287 144-230 (324)
390 COG5159 RPN6 26S proteasome re 57.2 1.5E+02 0.0033 26.9 11.0 124 60-183 9-153 (421)
391 KOG1585 Protein required for f 56.5 1.5E+02 0.0032 26.4 17.8 203 56-281 33-250 (308)
392 cd08819 CARD_MDA5_2 Caspase ac 56.4 74 0.0016 23.0 6.9 39 136-175 48-86 (88)
393 PF11848 DUF3368: Domain of un 56.1 48 0.001 20.8 5.3 34 64-97 12-45 (48)
394 KOG2066 Vacuolar assembly/sort 55.8 1.8E+02 0.0039 30.4 11.3 71 131-205 363-438 (846)
395 PF08311 Mad3_BUB1_I: Mad3/BUB 55.8 98 0.0021 24.2 8.2 42 276-317 81-124 (126)
396 PRK10564 maltose regulon perip 55.7 25 0.00055 32.0 5.1 45 153-197 254-299 (303)
397 KOG1498 26S proteasome regulat 55.5 1.9E+02 0.0042 27.6 15.1 194 137-336 25-256 (439)
398 KOG4507 Uncharacterized conser 55.3 37 0.00081 33.9 6.4 112 40-152 590-704 (886)
399 PRK10564 maltose regulon perip 54.2 27 0.00059 31.8 5.0 39 56-94 259-297 (303)
400 PF11663 Toxin_YhaV: Toxin wit 54.1 15 0.00033 28.8 3.0 34 165-200 105-138 (140)
401 KOG3807 Predicted membrane pro 54.1 1.9E+02 0.004 26.9 10.7 15 277-291 381-395 (556)
402 PHA02875 ankyrin repeat protei 53.8 2.1E+02 0.0047 27.6 12.3 16 133-148 74-89 (413)
403 PF04910 Tcf25: Transcriptiona 53.7 2.1E+02 0.0045 27.3 14.2 64 257-320 99-167 (360)
404 PF09986 DUF2225: Uncharacteri 53.4 74 0.0016 27.7 7.6 30 293-322 166-195 (214)
405 KOG0545 Aryl-hydrocarbon recep 53.3 1.1E+02 0.0023 27.2 8.2 58 264-321 236-293 (329)
406 KOG0376 Serine-threonine phosp 52.3 12 0.00026 36.2 2.6 94 197-293 11-107 (476)
407 KOG0292 Vesicle coat complex C 52.1 27 0.00058 36.6 5.1 75 196-286 626-700 (1202)
408 PF14689 SPOB_a: Sensor_kinase 51.4 34 0.00074 22.9 4.1 21 161-181 29-49 (62)
409 KOG2063 Vacuolar assembly/sort 50.9 3.5E+02 0.0076 29.2 17.7 132 56-202 506-638 (877)
410 PF11846 DUF3366: Domain of un 50.5 62 0.0014 27.4 6.7 51 202-252 120-170 (193)
411 COG0735 Fur Fe2+/Zn2+ uptake r 50.3 96 0.0021 25.0 7.3 43 96-138 27-69 (145)
412 PF00244 14-3-3: 14-3-3 protei 50.1 1.8E+02 0.004 25.7 10.8 160 60-219 7-198 (236)
413 COG4455 ImpE Protein of avirul 49.7 1.8E+02 0.0039 25.4 11.9 73 158-234 4-80 (273)
414 KOG1464 COP9 signalosome, subu 49.0 2E+02 0.0044 25.9 15.5 182 66-247 39-252 (440)
415 PF06957 COPI_C: Coatomer (COP 47.2 89 0.0019 30.3 7.6 39 253-291 293-333 (422)
416 PF04190 DUF410: Protein of un 46.9 2.2E+02 0.0047 25.6 20.7 158 35-219 2-170 (260)
417 PRK11639 zinc uptake transcrip 46.8 90 0.002 25.9 6.8 36 105-140 41-76 (169)
418 COG2909 MalT ATP-dependent tra 46.1 4E+02 0.0088 28.5 24.0 215 100-317 426-684 (894)
419 PF14863 Alkyl_sulf_dimr: Alky 46.1 97 0.0021 24.9 6.6 61 243-306 58-118 (141)
420 PF14689 SPOB_a: Sensor_kinase 45.9 35 0.00077 22.8 3.5 44 39-82 6-51 (62)
421 COG5108 RPO41 Mitochondrial DN 45.4 1.8E+02 0.0039 29.9 9.4 84 28-114 33-128 (1117)
422 cd00280 TRFH Telomeric Repeat 45.2 1.1E+02 0.0023 25.9 6.7 35 232-266 117-151 (200)
423 KOG4507 Uncharacterized conser 44.9 67 0.0015 32.2 6.3 57 28-84 254-313 (886)
424 PF02847 MA3: MA3 domain; Int 44.9 74 0.0016 24.1 5.7 22 59-80 7-28 (113)
425 KOG0687 26S proteasome regulat 44.7 2.7E+02 0.0057 26.0 13.0 25 192-216 106-130 (393)
426 PRK13342 recombination factor 44.3 3.1E+02 0.0067 26.7 15.4 42 158-199 230-274 (413)
427 smart00638 LPD_N Lipoprotein N 44.3 3.7E+02 0.008 27.5 25.0 25 54-78 340-364 (574)
428 PF04190 DUF410: Protein of un 44.1 2.4E+02 0.0052 25.4 15.8 81 225-321 89-170 (260)
429 PRK13800 putative oxidoreducta 43.5 4.8E+02 0.01 28.6 27.4 250 18-286 630-880 (897)
430 cd08332 CARD_CASP2 Caspase act 43.4 45 0.00097 24.3 4.0 33 36-68 47-79 (90)
431 PF12862 Apc5: Anaphase-promot 43.3 92 0.002 22.7 5.8 53 268-320 8-69 (94)
432 PF11848 DUF3368: Domain of un 43.0 83 0.0018 19.7 5.2 32 166-197 13-44 (48)
433 PF08424 NRDE-2: NRDE-2, neces 42.7 2.9E+02 0.0062 25.8 15.3 61 71-133 48-108 (321)
434 PF04910 Tcf25: Transcriptiona 42.2 3.1E+02 0.0068 26.1 18.5 116 121-252 37-165 (360)
435 PF11838 ERAP1_C: ERAP1-like C 42.1 2.8E+02 0.0061 25.6 18.7 32 33-64 48-83 (324)
436 PF10255 Paf67: RNA polymerase 42.0 1.3E+02 0.0029 29.0 7.9 55 128-182 126-191 (404)
437 PF11525 CopK: Copper resistan 42.0 8.4 0.00018 26.0 -0.0 21 437-457 8-28 (73)
438 PF12069 DUF3549: Protein of u 41.8 3E+02 0.0066 25.8 13.6 134 129-269 171-309 (340)
439 KOG2300 Uncharacterized conser 41.4 3.7E+02 0.0079 26.7 21.0 145 39-183 298-473 (629)
440 KOG0890 Protein kinase of the 41.0 7.4E+02 0.016 30.1 21.8 280 4-288 1395-1732(2382)
441 PF11817 Foie-gras_1: Foie gra 40.9 2.1E+02 0.0045 25.5 8.7 56 94-149 183-243 (247)
442 KOG0991 Replication factor C, 40.5 2.6E+02 0.0057 24.8 10.2 100 94-196 164-279 (333)
443 PF10475 DUF2450: Protein of u 39.7 1.7E+02 0.0037 26.9 8.1 53 129-183 103-155 (291)
444 COG0790 FOG: TPR repeat, SEL1 39.6 2.9E+02 0.0063 25.0 21.1 148 36-186 54-222 (292)
445 KOG0292 Vesicle coat complex C 39.4 4.5E+02 0.0098 28.3 11.3 131 132-286 651-781 (1202)
446 PF11768 DUF3312: Protein of u 38.5 3.8E+02 0.0083 26.9 10.4 24 58-81 412-435 (545)
447 PF10475 DUF2450: Protein of u 38.3 2.4E+02 0.0051 25.9 8.8 23 154-176 196-218 (291)
448 PF11817 Foie-gras_1: Foie gra 37.8 1.2E+02 0.0026 27.0 6.7 51 231-281 183-241 (247)
449 COG0735 Fur Fe2+/Zn2+ uptake r 37.2 2.2E+02 0.0048 22.9 7.5 63 178-242 9-71 (145)
450 COG5108 RPO41 Mitochondrial DN 36.9 1.8E+02 0.0039 29.9 8.0 47 160-206 33-81 (1117)
451 KOG4642 Chaperone-dependent E3 36.8 3.1E+02 0.0066 24.4 9.5 81 134-216 20-104 (284)
452 PRK10941 hypothetical protein; 36.7 3.3E+02 0.0071 24.7 10.3 60 158-219 184-244 (269)
453 cd08326 CARD_CASP9 Caspase act 36.1 1.6E+02 0.0035 21.1 6.3 40 135-174 41-80 (84)
454 KOG3807 Predicted membrane pro 36.1 2.8E+02 0.006 25.9 8.4 52 162-215 282-336 (556)
455 COG4976 Predicted methyltransf 34.9 62 0.0013 28.3 4.0 47 203-252 8-55 (287)
456 PRK11639 zinc uptake transcrip 34.7 1.9E+02 0.0042 23.9 7.0 61 181-243 17-77 (169)
457 cd08323 CARD_APAF1 Caspase act 34.5 90 0.0019 22.6 4.3 37 35-71 40-76 (86)
458 PRK14962 DNA polymerase III su 34.3 4.8E+02 0.01 26.0 11.5 24 102-125 256-279 (472)
459 KOG4814 Uncharacterized conser 34.2 5.4E+02 0.012 26.6 10.6 85 237-321 365-457 (872)
460 KOG4521 Nuclear pore complex, 34.1 7.1E+02 0.015 27.9 14.9 163 129-315 925-1125(1480)
461 COG4941 Predicted RNA polymera 33.5 4.1E+02 0.0089 25.0 9.9 116 171-291 272-398 (415)
462 PF09454 Vps23_core: Vps23 cor 33.3 1.3E+02 0.0029 20.3 4.7 44 53-97 7-50 (65)
463 KOG0551 Hsp90 co-chaperone CNS 33.1 2E+02 0.0043 26.9 7.1 85 232-316 87-177 (390)
464 KOG2471 TPR repeat-containing 33.1 4E+02 0.0087 26.5 9.3 139 96-237 213-380 (696)
465 cd07153 Fur_like Ferric uptake 32.7 1.1E+02 0.0024 23.2 5.0 45 60-104 6-50 (116)
466 PF03745 DUF309: Domain of unk 31.9 1.6E+02 0.0034 19.7 5.0 48 165-212 9-61 (62)
467 KOG2659 LisH motif-containing 31.2 3.6E+02 0.0079 23.6 8.4 16 201-216 75-90 (228)
468 PF02607 B12-binding_2: B12 bi 31.2 1.3E+02 0.0029 20.8 4.8 39 166-204 12-50 (79)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 31.1 2.6E+02 0.0056 21.9 9.9 43 173-215 81-124 (126)
470 PF11123 DNA_Packaging_2: DNA 30.6 1.6E+02 0.0035 20.5 4.6 29 106-135 14-42 (82)
471 PF09670 Cas_Cas02710: CRISPR- 30.5 5E+02 0.011 25.0 12.2 55 63-118 140-198 (379)
472 KOG0686 COP9 signalosome, subu 30.2 5.1E+02 0.011 25.0 15.1 60 56-115 152-213 (466)
473 KOG1524 WD40 repeat-containing 30.2 5.8E+02 0.012 25.6 10.5 64 89-158 573-636 (737)
474 COG2178 Predicted RNA-binding 29.8 3.6E+02 0.0077 23.1 8.7 18 303-320 132-149 (204)
475 KOG2062 26S proteasome regulat 29.7 6.9E+02 0.015 26.4 12.3 119 164-286 510-634 (929)
476 PF07720 TPR_3: Tetratricopept 29.7 1.2E+02 0.0026 17.6 4.4 13 268-280 11-23 (36)
477 PF01475 FUR: Ferric uptake re 29.7 99 0.0021 23.8 4.3 46 58-103 11-56 (120)
478 KOG3824 Huntingtin interacting 29.4 1.1E+02 0.0023 28.2 4.7 58 237-294 127-186 (472)
479 PF08967 DUF1884: Domain of un 29.3 69 0.0015 22.7 2.8 27 351-377 7-33 (85)
480 PF09454 Vps23_core: Vps23 cor 29.1 1.9E+02 0.004 19.6 4.9 48 153-201 6-53 (65)
481 KOG1114 Tripeptidyl peptidase 29.1 7.9E+02 0.017 26.8 13.6 38 203-240 1244-1281(1304)
482 smart00544 MA3 Domain in DAP-5 28.8 2.5E+02 0.0055 21.1 9.1 23 59-81 7-29 (113)
483 COG2178 Predicted RNA-binding 28.6 3.7E+02 0.0081 22.9 8.5 50 134-183 39-97 (204)
484 PF10255 Paf67: RNA polymerase 27.9 1.8E+02 0.0038 28.2 6.2 57 25-81 124-191 (404)
485 cd07153 Fur_like Ferric uptake 27.6 1.7E+02 0.0037 22.2 5.3 45 161-205 6-50 (116)
486 KOG0403 Neoplastic transformat 27.4 6E+02 0.013 25.0 15.9 62 262-323 513-574 (645)
487 PF02847 MA3: MA3 domain; Int 27.3 2.1E+02 0.0047 21.4 5.8 59 129-187 7-69 (113)
488 KOG4279 Serine/threonine prote 27.2 3.6E+02 0.0079 28.3 8.3 28 156-183 202-229 (1226)
489 PF12862 Apc5: Anaphase-promot 27.0 2.5E+02 0.0054 20.4 7.9 18 200-217 51-68 (94)
490 PF11663 Toxin_YhaV: Toxin wit 27.0 46 0.001 26.3 1.8 32 66-99 107-138 (140)
491 PF07575 Nucleopor_Nup85: Nup8 26.8 2.4E+02 0.0052 28.9 7.5 59 88-148 404-462 (566)
492 COG2909 MalT ATP-dependent tra 26.7 8.3E+02 0.018 26.3 25.0 219 64-283 425-684 (894)
493 PF04762 IKI3: IKI3 family; I 26.5 9E+02 0.02 26.7 17.0 40 28-67 699-745 (928)
494 PF04090 RNA_pol_I_TF: RNA pol 26.2 4.2E+02 0.0091 22.7 7.9 60 260-319 43-103 (199)
495 PF14561 TPR_20: Tetratricopep 25.7 2.6E+02 0.0057 20.2 8.1 31 122-152 20-50 (90)
496 KOG3677 RNA polymerase I-assoc 25.7 6.3E+02 0.014 24.6 9.1 58 92-150 238-298 (525)
497 PF12796 Ank_2: Ankyrin repeat 25.6 1.2E+02 0.0025 21.5 3.8 15 33-47 4-18 (89)
498 PF09986 DUF2225: Uncharacteri 25.3 4.5E+02 0.0098 22.8 8.6 49 71-119 142-195 (214)
499 COG5431 Uncharacterized metal- 24.7 33 0.00071 25.4 0.6 12 449-460 46-57 (117)
500 COG4976 Predicted methyltransf 24.6 1.7E+02 0.0037 25.8 4.9 57 236-292 5-63 (287)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-101 Score=791.16 Aligned_cols=460 Identities=41% Similarity=0.716 Sum_probs=449.1
Q ss_pred ccccCCchHHHHHHhcCC---------------------------------------CCCHHHHHHHHHHHHHcCCHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---------------------------------------EPDVVCQTAMISACAKCGDVDLA 42 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---------------------------------------~~~~~~~~~li~~~~~~g~~~~A 42 (461)
|++.|++++|.++|++|. .||..+||+||++|+++|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 677888888888887652 35666778999999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 012539 43 RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122 (461)
Q Consensus 43 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 122 (461)
.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|++|
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
+..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999999887899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHH
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEIS 362 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (461)
++.++.|++..+|..|+++|++.|+|++|.+++++|++.|+++.|++||+++++.+|.|++||..||+..+++..+.++.
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 598 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELM 598 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcEEEecccccCcchhhHhHHhhhhcCceEEEe
Q 012539 363 RRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442 (461)
Q Consensus 363 ~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 442 (461)
.+|++.||.||+.++++++++++++..++.|||+||++|||+++++++||||+||||+|+|||+|+|+||++.+|+||||
T Consensus 599 ~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 678 (697)
T PLN03081 599 KEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVR 678 (697)
T ss_pred HHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCccCCCCCC
Q 012539 443 DRNRFHHFKEGKCSCKGYW 461 (461)
Q Consensus 443 ~~~~~h~~~~g~~s~~~~w 461 (461)
|.+|||||+||+|||+|||
T Consensus 679 d~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 679 DASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCccccCCCCcccccccC
Confidence 9999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-94 Score=757.55 Aligned_cols=455 Identities=42% Similarity=0.768 Sum_probs=438.3
Q ss_pred ccccCCchHHHHHHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|++.|+++.|.++++.+ ..|+..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666666443 35778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (461)
++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+.+
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 99986 5999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 237 (461)
||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
+.|++++|.+++++|+.+||..+|++|+.+|..+++.+.++.+.+++.+++|++...|..|.++|+..|+|++|.++++.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHH
Q 012539 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKV 397 (461)
Q Consensus 318 m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l 397 (461)
|++.|++++|++|||++++.+|.|.+||.+||+.++++..++++..+|++.||.||+..+++ .++++|+..++.|||+|
T Consensus 717 M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~l 795 (857)
T PLN03077 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERL 795 (857)
T ss_pred HHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999988884 57788999999999999
Q ss_pred HHHHhhcCCCCCCcEEEecccccCcchhhHhHHhhhhcCceEEEecCCcccccccCccCCCC
Q 012539 398 AIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKG 459 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~ 459 (461)
|++|||+++|+++||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 796 a~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 796 AIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-57 Score=475.33 Aligned_cols=446 Identities=23% Similarity=0.369 Sum_probs=386.1
Q ss_pred ccccCCchHHHHHHhcCC----CCC-----------------------------------HHHHHHHHHHHHHcCCHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH----EPD-----------------------------------VVCQTAMISACAKCGDVDLA 42 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~----~~~-----------------------------------~~~~~~li~~~~~~g~~~~A 42 (461)
|++.|++++|.++|+.|. .|| +.+||+||.+|+++|+++.|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 677888888888887652 344 45567888899999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 012539 43 RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122 (461)
Q Consensus 43 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 122 (461)
.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.|
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
|..+||+|+.+|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|+++|.+|.+.|+.++|..+|+
T Consensus 402 ~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 402 LGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred cchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999875 999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeC-------------------CE---EEE
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD-------------------RE---VHE 340 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~-------------------~~---~~~ 340 (461)
+|.+..++|..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++ .. ...
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~ 559 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI 559 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHH
Confidence 99977677788999999999999999999999999988888665432111000 00 011
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhh---hhhhHHHHHHHhhcCCCCCCcEEEecc
Q 012539 341 FFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTL---CKHSEKVAIAFGLISLKEGVPIRIVKN 417 (461)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~ 417 (461)
++.|+..|++.+++.. ++++|.+.|+.||..++...+..+.+.+.+ ....+.+...+|+.+...++. ++++.
T Consensus 560 lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~ 634 (857)
T PLN03077 560 LLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDL 634 (857)
T ss_pred HHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHH
Confidence 2455667777777766 788899999999999888777777665554 334556666788777766665 78999
Q ss_pred cccCcchhhHhHHhhhhcCc------eEEEecCCcccccccCc
Q 012539 418 LRVCWDCHDVTKMISKVFNR------EIIVRDRNRFHHFKEGK 454 (461)
Q Consensus 418 ~~~c~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~~g~ 454 (461)
+.++|+..+|.++|.+|+.. ..++..|+.+.+.+.|+
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999743 23445555555554443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-54 Score=444.76 Aligned_cols=420 Identities=22% Similarity=0.329 Sum_probs=362.9
Q ss_pred ccccCCchHHHHHHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|++.++++.|.+++..+ ..||+.+||.|+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 56778888888888665 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (461)
++|.+.|+.||..||+.++.+|+..|..+.+.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt 292 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 237 (461)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 99999999999999999
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-CCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
++|++++|.++|++|. +||..+||+||.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+
T Consensus 372 k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 372 KWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred HCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999997 6899999999999999999999999999998754 5567899999999999999999999999
Q ss_pred HHHh-CCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhH
Q 012539 317 IMKA-KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSE 395 (461)
Q Consensus 317 ~m~~-~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~ 395 (461)
.|.+ .|+.|+..... .++.++...++.+++++ .+++.+..||..++...+..+.+.+.+- ..+
T Consensus 451 ~m~~~~g~~p~~~~y~--------~li~~l~r~G~~~eA~~-------~~~~~~~~p~~~~~~~Ll~a~~~~g~~~-~a~ 514 (697)
T PLN03081 451 SMSENHRIKPRAMHYA--------CMIELLGREGLLDEAYA-------MIRRAPFKPTVNMWAALLTACRIHKNLE-LGR 514 (697)
T ss_pred HHHHhcCCCCCccchH--------hHHHHHHhcCCHHHHHH-------HHHHCCCCCCHHHHHHHHHHHHHcCCcH-HHH
Confidence 9986 58876543211 12334445566666554 3445688898765444444433322221 111
Q ss_pred HH-HHHHhhcCCCCCCcEEEecccccCcchhhHhHHhhhhcCceE
Q 012539 396 KV-AIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439 (461)
Q Consensus 396 ~l-~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 439 (461)
.. ...+++-+.....-+.+++.+..+|+..+|.+++..|..+.+
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 11 112343333233344567789999999999999999998865
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-53 Score=439.81 Aligned_cols=431 Identities=18% Similarity=0.248 Sum_probs=361.1
Q ss_pred ccccCCchHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHH
Q 012539 2 YAELGCLGYCQKVFDGIH----EPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYAQCGKSREA 73 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A 73 (461)
|++.|+++.|.++|+.|. .||..+|++||.+|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 678899999999997764 6899999999999999999999999999998 57999999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER--NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 74 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
+++|++|.+.|+.||..||+.++.+|++.|++++|.++|.+|.+ .++.||..+|++|+.+|+++|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 6789999999999999999999999999999998
Q ss_pred C----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh
Q 012539 152 E----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 152 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
+ |+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~ 685 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTV 685 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 5 5779999999999999999999999999999999999999999999999999999999999999875 9999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-CCCcchHHHHHHHHh
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYA 303 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~ 303 (461)
+|++||.+|++.|++++|.++|++| +..||..+|++||.+|++.|++++|.++|++|.+.+ .+|..+|..|+.+|.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 578999999999999999999999999999998654 556789999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCcccEEEeC-------------CEEEEEEeCCCCCCC-hHHHHHHHHHHHHHHHHcC
Q 012539 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD-------------REVHEFFAGDETHPR-YNEIEVMLGEISRRLKLAG 369 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~m~~~g 369 (461)
+.|++++|.+++++|.+.|+.|+.......++ ..+..|-.+ ++. ...-......++++|.+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCC
Confidence 99999999999999999999887632211111 111111111 111 1112233556899999999
Q ss_pred cccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcE--EEecccccCcc-hhhHhHHhhhhcCceEE
Q 012539 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPI--RIVKNLRVCWD-CHDVTKMISKVFNREII 440 (461)
Q Consensus 370 ~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~c~~-~~~~~~~~~~~~~~~~~ 440 (461)
+.||..++...+....+.+. ......+-..+++.+.+++... .+++.+ +. -++|..++..+..+.|+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred CCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCC
Confidence 99998777655532111111 2234455556666665555421 233433 32 25799999998876543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-51 Score=423.95 Aligned_cols=362 Identities=18% Similarity=0.267 Sum_probs=329.6
Q ss_pred ccccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE----RDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|.+.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+ ||+.+||+||.+|++.|+.++|.++|
T Consensus 416 ~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 56778889999999999889999999999999999999999999999974 68999999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC------
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK------ 151 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 151 (461)
++|.+.|+.||..||+.++.+|++.|++++|.++|..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 496 ~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHH
Q 012539 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231 (461)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 231 (461)
.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~Tyns 654 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSA 654 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999875 99999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-CCCcchHHHHHHHHhhcCC
Q 012539 232 LVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 307 (461)
++++|++.|++++|.+++++| +..||..+|++||.+|++.|++++|.++|++|.+.+ .++..+|+.|+.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999 678999999999999999999999999999998653 4567799999999999999
Q ss_pred hhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCc
Q 012539 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376 (461)
Q Consensus 308 ~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~ 376 (461)
+++|.+++++|.+.|+.|+...... ++.++...+..+++.. ++..|.+.|+.||..+
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~s--------LL~a~~k~G~le~A~~----l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSI--------LLVASERKDDADVGLD----LLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHH----HHHHHHHcCCCCCHHH
Confidence 9999999999999999876543322 1334445566555555 8888999999999643
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=4.1e-30 Score=197.24 Aligned_cols=106 Identities=63% Similarity=1.055 Sum_probs=95.6
Q ss_pred cccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhhHHHHH
Q 012539 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK--------EDTLCKHSEKVAI 399 (461)
Q Consensus 328 ~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~l~~ 399 (461)
++||+++ |.|++|+.+||+. ++..+|...|+.|++..+.+++.++++ +..++.|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5789866 8999999999998 366677888999999998887776655 5688999999999
Q ss_pred HHhhcCCCCCCcEEEeccc-ccCcchhhHhHHhhhhcCceEEEecCCcccccc
Q 012539 400 AFGLISLKEGVPIRIVKNL-RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 451 (461)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=3.6e-21 Score=205.74 Aligned_cols=315 Identities=10% Similarity=0.059 Sum_probs=235.5
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|+.++|...|+++. ..+...+..++..|.+.|++++|..+++.+.+ .++..|..+...|.+.|++++|+.
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788888888887764 24566777788888888888888888887653 356778888888888888888888
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 012539 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 152 (461)
.|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+...+..++..+...|++++|.++++.+.+
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 888887653 3356667777788888888888888888887764 45567777788888888888888888887763
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 232 (461)
.+...+..+...+...|++++|++.|+++... .|+..++..+..++...|+.++|...++.+.+. .+.++..+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 35567777778888888888888888887774 344466667777778888888888888777653 34456777777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
...|...|++++|...|+++ ... ++..+++.+...+...|+ .+|...++++.+..|+++..+..++.++...|++++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 78888888888888888776 223 355577777777777777 667777777777777777777777777777788888
Q ss_pred HHHHHHHHHhCCC
Q 012539 311 VINVRQIMKAKGV 323 (461)
Q Consensus 311 a~~~~~~m~~~g~ 323 (461)
|.++++++.+.+.
T Consensus 856 A~~~~~~a~~~~~ 868 (899)
T TIGR02917 856 ALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCC
Confidence 8887777776554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=8.4e-21 Score=202.90 Aligned_cols=314 Identities=13% Similarity=0.037 Sum_probs=274.0
Q ss_pred ccccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|.+.|+.+.. .+..++..+...+.+.|++++|...|+++.+ .+...+..++..|...|++++|+.
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 5578999999999988753 4678899999999999999999999998753 356788899999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 012539 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 152 (461)
+++++.... +.+..+|..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++.+
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999998753 5577889999999999999999999999998875 55677888899999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 232 (461)
.+..+|..++..+...|++++|.++++.+.+.. +++...+..+...+...|++++|...|..+.. ..|+..++..+
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l 742 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKL 742 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHH
Confidence 467899999999999999999999999998864 45677788888899999999999999999875 35666788889
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
+.++.+.|++++|.+.++++ ... .+...+..+...|...|+.++|...|+++.+..|+++.++..++.++...|+ .+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 99999999999999999887 323 4566888888889999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHhCC
Q 012539 311 VINVRQIMKAKG 322 (461)
Q Consensus 311 a~~~~~~m~~~g 322 (461)
|+..+++..+..
T Consensus 822 A~~~~~~~~~~~ 833 (899)
T TIGR02917 822 ALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhhC
Confidence 999999987753
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=5e-21 Score=184.82 Aligned_cols=294 Identities=13% Similarity=0.074 Sum_probs=245.6
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHhccC
Q 012539 30 ISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN---EVSMVSVLSACTHLG 103 (461)
Q Consensus 30 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~ 103 (461)
...+...|++++|...|+++.+. ++.+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44567889999999999998753 456889999999999999999999999987542222 246788889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------HHHHHHHHHHHHhCCChHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN--------VYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 175 (461)
+++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 5567889999999999999999999999986421 124567788899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINKM- 252 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~- 252 (461)
+.|+++.+.. +.+...+..+...+...|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|...++++
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998753 234567778888999999999999999999753 333 467888999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh---cCChhHHHHHHHHHHhCCCccCCcc
Q 012539 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE---SKNWDRVINVRQIMKAKGVKKLPGC 329 (461)
Q Consensus 253 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 329 (461)
...|+...+..+...+.+.|++++|..+++++.+..|++. .+..++..+.. .|+.+++..++++|.++++.++|.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 4567777778888889999999999999999999998875 66666666553 5689999999999999999988873
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.7e-20 Score=178.74 Aligned_cols=280 Identities=14% Similarity=0.091 Sum_probs=236.4
Q ss_pred cccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChHH
Q 012539 3 AELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPERD-------PIAWNAMLAGYAQCGKSRE 72 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~ 72 (461)
...|++++|...|.++.+ | +..++..+...+.+.|++++|..+++.+.... ...+..++..|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 467999999999999863 3 55688999999999999999999999876531 2468899999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 73 ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT----VTLGTALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 73 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 148 (461)
|+.+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+. ...+..++..+.+.|++++|.+.|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999998753 45678899999999999999999999999998764332 2245668888999999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 149 GMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 149 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
++.+ .+...+..+...|.+.|++++|+++|+++...+......++..++.+|...|++++|...++.+.+. .|+
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~ 281 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPG 281 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 9864 3467888899999999999999999999987532222466788999999999999999999998753 577
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRM---YKNTEMGELASRKLVE 286 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 286 (461)
...+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++..+++++.+
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 777789999999999999999999877 557999999988888664 5688999999998885
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=9.6e-18 Score=170.74 Aligned_cols=314 Identities=11% Similarity=0.020 Sum_probs=183.8
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
|.+.|++++|+..|++.+ .|++..|..+..+|.+.|++++|+..++...+. ++..|..+..+|...|++++|+.-
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456788999999998865 478888888888999999999999888876542 455777788888888888877654
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 012539 77 FHLMQ--------------------------------------------------------------------------- 81 (461)
Q Consensus 77 ~~~m~--------------------------------------------------------------------------- 81 (461)
|....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 43321
Q ss_pred -------------------------HCC-CCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 82 -------------------------IHD-VKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 82 -------------------------~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
..+ ..| +...+..+...+...|++++|...++..++.. +.....|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 111 011 11223333334444555555555555555442 22334445555555
Q ss_pred HhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHH
Q 012539 135 SKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 210 (461)
...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|.
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHH
Confidence 555666666655554432 23455566666666666666666666666553 232 444445555555666666666
Q ss_pred HHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCChHHHHHHH
Q 012539 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA-G-------AWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
..|+...+. .+.++..+..+...+...|++++|.+.|++. ...|+. . .++..+..+...|++++|..++
T Consensus 454 ~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666665432 1223455666666666666666666666654 222221 0 1111112233346666666666
Q ss_pred HHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 282 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+++.+++|++..++..++.++.+.|++++|.+.+++..+
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666666666666677777777666666544
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.4e-17 Score=169.30 Aligned_cols=312 Identities=8% Similarity=-0.059 Sum_probs=254.1
Q ss_pred cccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
.+.|++++|..+++.... .+...+..++.+....|+++.|...|+++.+ | +...|..+...+.+.|++++|+..
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 467999999999887642 3455666677777889999999999999864 3 567899999999999999999999
Q ss_pred HHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 012539 77 FHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-- 153 (461)
Q Consensus 77 ~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 153 (461)
|+++.+. .| +...+..+..++...|++++|...+..+...... +...+..+ ..+...|++++|...++.+.+.
T Consensus 133 l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 133 AEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999885 44 5667888889999999999999999988776533 33344333 3478899999999999987643
Q ss_pred --CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH----HHHHHHHhhhhcCCcc-Ch
Q 012539 154 --NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE----GREHFDSMRREYGIEP-WL 226 (461)
Q Consensus 154 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~ 226 (461)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+.++ |...|+.+.+ +.| +.
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~ 284 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNV 284 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCH
Confidence 33445556778899999999999999998753 3346677788889999999886 7999998874 345 47
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
..+..+...+.+.|++++|...+++. ...|+. ..+..+...+...|++++|...++++.+..|.+...+..+..++..
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 78899999999999999999999888 445654 4677777889999999999999999999999887666667888999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 012539 305 SKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g 322 (461)
.|++++|.+.+++..+..
T Consensus 365 ~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 365 AGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999987654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=5.4e-19 Score=165.00 Aligned_cols=309 Identities=14% Similarity=0.128 Sum_probs=178.5
Q ss_pred cCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChHHHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
.|++++|+..++.+.+ | .+..|..+..++...|+.+.|...|.+..+-|+. ..+.+.......|+.++|...|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 4555666666655542 2 3445555666666666666655555554432221 11122233333444444444444
Q ss_pred HHHHCCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C
Q 012539 79 LMQIHDVKLN-EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ER-N 154 (461)
Q Consensus 79 ~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~ 154 (461)
+..+. .|. .+.|+.+...+-..|+...|++.|.+.++.. |.-...|-.|.+.|...+.++.|...|.+.. .| .
T Consensus 209 kAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 209 KAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 44432 221 2244455555555666666666666666543 2223445556666666666666666666544 22 3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCL 232 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 232 (461)
.+++..|...|-.+|..+-|+..|++..+ +.|+ ...|+.|..++...|++.+|.+.+...+. +.|+ ....+.|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NL 360 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNL 360 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHH
Confidence 35555555666666777777777776665 4555 55677777777777777777777766653 3343 4556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
...|...|.+++|..+|... .+.|.-. ..+.|...|.+.|++++|...|++++++.|.-..+|+.+.+.|-..|+.+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 66777777777777766655 4445433 556666666777777777777777777777666666677777777777777
Q ss_pred HHHHHHHHHhC
Q 012539 311 VINVRQIMKAK 321 (461)
Q Consensus 311 a~~~~~~m~~~ 321 (461)
|.+.+.+.+..
T Consensus 441 A~q~y~rAI~~ 451 (966)
T KOG4626|consen 441 AIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHHhc
Confidence 76666665543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=4.2e-18 Score=159.07 Aligned_cols=311 Identities=16% Similarity=0.181 Sum_probs=168.7
Q ss_pred ccccCCchHHHHHHhcCCC--CCHHH-HHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE--PDVVC-QTAMISACAKCGDVDLARKMFDEMPE--RD-PIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|...|+.+.|.+.|...++ |+... .+.+....-..|++++|...+.+..+ |. .+.|+.|...+-.+|+...|+.
T Consensus 160 l~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 160 LVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred HHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 3455666666666655543 33222 22233334445666666555554332 21 3456666666666666666666
Q ss_pred HHHHHHHCCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 012539 76 LFHLMQIHDVKLN-EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 152 (461)
-|++... +.|+ ...|..+...|...+.++.|...+.+..... +....++..|...|...|.++-|+..|++..+
T Consensus 240 ~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 240 HYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred HHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 6665554 2333 2355555666666666666666555555432 22334444455555566666666666655543
Q ss_pred CC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHH
Q 012539 153 RN-VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHY 229 (461)
Q Consensus 153 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 229 (461)
|+ ..+|+.|..++-..|+..+|.+.|++.... .|+ ....+.|...+...|.+++|..+|.... .+.|. ....
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~ 391 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAH 391 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhh
Confidence 22 345666666666666666666666655552 333 4455555556666666666666655543 33443 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
+.|...|-..|++++|...+++. .++|+.. .++.+...|...|++..|.+.+.+++..+|.-..++..|..+|-.+|+
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 55555666666666666655555 4455443 555555556666666666666666666666555555566666666666
Q ss_pred hhHHHHHHHHHHh
Q 012539 308 WDRVINVRQIMKA 320 (461)
Q Consensus 308 ~~~a~~~~~~m~~ 320 (461)
..+|+.-+++..+
T Consensus 472 i~~AI~sY~~aLk 484 (966)
T KOG4626|consen 472 IPEAIQSYRTALK 484 (966)
T ss_pred cHHHHHHHHHHHc
Confidence 6666665555544
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=9.4e-17 Score=163.24 Aligned_cols=291 Identities=7% Similarity=-0.064 Sum_probs=241.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 27 TAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 27 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
..++..+.+.|++++|..+++.... .+...+..++.+....|++++|+..|+++.... +.+...+..+...+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3456677899999999999998753 356677788888889999999999999999853 235667888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
++++|...+..+.+.. +.+...+..++..+...|++++|...++.+.. | +...+..+ ..+...|++++|+..++.
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999999874 55677888899999999999999999987642 3 34444444 347889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH----HHHHHHhC-CCC
Q 012539 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE----ALDVINKM-PMK 255 (461)
Q Consensus 181 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~~~ 255 (461)
+......++......+..++...|+.++|...++.+.+. -+.+...+..+...|...|++++ |...|++. ...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 877643344555555677888999999999999998753 23357788889999999999986 78888887 445
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 256 PH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 256 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|+ ...+..+...+...|++++|...++++.+..|+++..+..+..+|.+.|++++|...++++.+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 65 45888888889999999999999999999999999999999999999999999999999988754
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=7e-16 Score=167.27 Aligned_cols=312 Identities=13% Similarity=0.088 Sum_probs=183.4
Q ss_pred ccccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-----hhHHHH------------HH
Q 012539 2 YAELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPERD-----PIAWNA------------ML 61 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~------------li 61 (461)
+...|++++|+..|++.+. | |...+..|...|.+.|++++|+..|++..+.+ ...|.. +.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3467899999999988753 4 67889999999999999999999999865421 122322 23
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-------
Q 012539 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY------- 134 (461)
Q Consensus 62 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~------- 134 (461)
..+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++++++.. +.+...+..+...|
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 46778899999999999998864 2356677778889999999999999999998865 33444444444444
Q ss_pred -----------------------------------HhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHH
Q 012539 135 -----------------------------------SKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 135 -----------------------------------~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
...|++++|++.|++..+ | +...+..+...|.+.|++++|+.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 334444444444444432 1 23344444445555555555555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccCh---------hHHHHHHHHHHhcCCHHHHH
Q 012539 177 LFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL---------EHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 177 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~ 246 (461)
.|+++.+. .| +...+..+...+...++.++|...++.+... ...++. ..+..+...+...|+.++|.
T Consensus 517 ~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 517 LMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 55554432 12 2222222222333445555555555443211 000000 00112233344455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 247 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+++.-+ ++...+..+...+...|++++|...++++.+..|+++.++..++.+|...|++++|.+.++...+
T Consensus 594 ~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555322 22334444555566666666666666666666666666666666666666666666666665543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=8.8e-16 Score=166.54 Aligned_cols=312 Identities=12% Similarity=0.022 Sum_probs=240.1
Q ss_pred ccccCCchHHHHHHhcCCC--CCH---HHHHH------------HHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE--PDV---VCQTA------------MISACAKCGDVDLARKMFDEMPE---RDPIAWNAML 61 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 61 (461)
|.+.|++++|+..|++..+ |+. ..|.. +...+.+.|++++|+..|++..+ .+...+..+.
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg 392 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5678999999999988653 321 22222 23467789999999999998764 3566788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCcC-HHHHHH------------------------------------------HHHH
Q 012539 62 AGYAQCGKSREALHLFHLMQIHDVKLN-EVSMVS------------------------------------------VLSA 98 (461)
Q Consensus 62 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~------------------------------------------ll~~ 98 (461)
..+...|++++|++.|++..+.. |+ ...+.. +...
T Consensus 393 ~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 393 DVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999988743 33 222222 2233
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+...|++++|.+.++++++.. |.+..++..+...|.+.|++++|...|+++.+ .+...+..+...+...++.++|+
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 446789999999999999875 45677788899999999999999999998753 35666666667778899999999
Q ss_pred HHHHHHHHcCCCCCHH---------HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHH
Q 012539 176 ELFSLMKQAGVRPNEV---------TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 246 (461)
..++++......++.. .+..+...+...|+.++|..+++. .++++..+..+...|.+.|++++|+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 9998764332222211 233456677889999999998872 2345667788899999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 247 DVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 247 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..|++. ...| +...+..+...+...|+.++|...++.+.+..|++...+..+..++...|++++|.++++++....
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999888 4455 456888888899999999999999999999889888888889999999999999999999987654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=5.3e-15 Score=150.69 Aligned_cols=291 Identities=11% Similarity=0.004 Sum_probs=234.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
+......|.+.|++++|+..|++.. .|+...|..+..+|...|++++|++.+.+.++.. +.+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4567778899999999999999865 4678889999999999999999999999998853 225568888999999999
Q ss_pred CHHHHHHHHHHHHHcCC-----------------------------CCchHHHHHH------------------------
Q 012539 104 ALDQGRWAHVYIERNRL-----------------------------KMTVTLGTAL------------------------ 130 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l------------------------ 130 (461)
++++|...+..+..... +++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 99999876544322110 0100000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HH
Q 012539 131 ------VDMY------SKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EV 191 (461)
Q Consensus 131 ------i~~~------~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 191 (461)
+..+ ...+++++|.+.|+..... +...|+.+...+...|++++|+..|++..+. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 0000 1135788999999887632 4567888899999999999999999999874 565 56
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNAC 268 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~ 268 (461)
.|..+...+...|++++|...|+.+++. .| +...|..+...+...|++++|...|++. ...|+ ...+..+...+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 7888888899999999999999998753 44 5788999999999999999999999988 45564 45777788889
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+.|++++|...++++.+..|.++..|..+..++...|++++|.+.+++..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999987653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=2.3e-14 Score=148.82 Aligned_cols=316 Identities=11% Similarity=0.003 Sum_probs=233.9
Q ss_pred cccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
...|+.++|++++..... .+...+..+...+.+.|++++|..+|++..+ .+...+..++..+...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 357889999999887542 3555688999999999999999999998542 3567788888999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----
Q 012539 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---- 152 (461)
Q Consensus 77 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 152 (461)
+++..+.. +.+.. +..+..++...|+.++|...++++.+.. |.+..++..+..++.+.|..++|++.++....
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 99998853 23445 7778888889999999999999999875 44555666677777777777766655553221
Q ss_pred -----------------------------------------------CCH-HHH----HHHHHHHHhCCChHHHHHHHHH
Q 012539 153 -----------------------------------------------RNV-YTW----TSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 153 -----------------------------------------------~~~-~~~----~~li~~~~~~g~~~~A~~~~~~ 180 (461)
|+. ..+ ...+..+...|++++|+..|++
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 110 000 0112234567889999999999
Q ss_pred HHHcCCC-CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012539 181 MKQAGVR-PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP 256 (461)
Q Consensus 181 m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 256 (461)
+.+.+.+ |+. .-..+..++...|++++|+.+|+.+.+.....+ .......+..++...|++++|..+++.+ ...|
T Consensus 263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 9886532 332 222356688899999999999998765311111 1245666777888999999999998887 2222
Q ss_pred -------------CH---HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 257 -------------HA---GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 257 -------------~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+. ..+..+...+...|+.++|+.+++++....|.++..+..++.++...|+.++|++.+++..+
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 21 23445566688899999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 012539 321 KG 322 (461)
Q Consensus 321 ~g 322 (461)
..
T Consensus 422 l~ 423 (765)
T PRK10049 422 LE 423 (765)
T ss_pred hC
Confidence 44
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=1.7e-14 Score=149.84 Aligned_cols=317 Identities=11% Similarity=-0.005 Sum_probs=236.9
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|..++++.+ ..++..+..++..+...|++++|+..+++..+ | +.. |..+...+...|++++|+.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 567899999999999864 24577788899999999999999999998754 2 556 8889999999999999999
Q ss_pred HHHHHHHCCCCc-CHHHHHHHHHHHhccCCHHH----------------------------------------------H
Q 012539 76 LFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQ----------------------------------------------G 108 (461)
Q Consensus 76 ~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~----------------------------------------------a 108 (461)
.++++.+. .| +...+..+..++...+..+. |
T Consensus 138 ~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~A 215 (765)
T PRK10049 138 AMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH
Confidence 99999885 34 33444444555544444443 3
Q ss_pred HHHHHHHHHc-CCCCchH-HH----HHHHHHHHhcCCHHHHHHHHHhcCCCC---H-HHHHHHHHHHHhCCChHHHHHHH
Q 012539 109 RWAHVYIERN-RLKMTVT-LG----TALVDMYSKCGNMNKAMDFFWGMKERN---V-YTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
...++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+...+ + ..-..+...|...|++++|+..|
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4444444432 1122211 11 111234457799999999999988532 1 12223577899999999999999
Q ss_pred HHHHHcCCCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC----------CccC---hhHHHHHHHHHHhcCCH
Q 012539 179 SLMKQAGVRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG----------IEPW---LEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 179 ~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~ 242 (461)
+++.+..... .......+..++...|++++|..+++.+..... -.|+ ...+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 9987643111 124456667788999999999999999875310 0122 23456778889999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++|++.++++ ...| +...+..+...+...|++++|+..++++.+.+|++...+..++..+...|++++|..+++++.+
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998 3345 4558888888899999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 012539 321 K 321 (461)
Q Consensus 321 ~ 321 (461)
.
T Consensus 456 ~ 456 (765)
T PRK10049 456 R 456 (765)
T ss_pred h
Confidence 4
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=1.7e-13 Score=143.11 Aligned_cols=311 Identities=11% Similarity=0.013 Sum_probs=201.1
Q ss_pred cccCCchHHHHHHhcCCC------CCHHHHHHHHHHHHHcCC---HHHHHHHHh-------------------------h
Q 012539 3 AELGCLGYCQKVFDGIHE------PDVVCQTAMISACAKCGD---VDLARKMFD-------------------------E 48 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~---~~~A~~~~~-------------------------~ 48 (461)
.+.|+.++|.++|..... .+...-+-|+..|.+.+. ..+|..+-. .
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 356777788888777653 123345567777776665 233332211 1
Q ss_pred CCC---C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 012539 49 MPE---R--DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123 (461)
Q Consensus 49 m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 123 (461)
... + +...|..+..++.. +++.+|+..|.+.... .|+......+..++...|++++|...++.+... +|+
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 111 1 45566677766665 6777777777766653 355544444445556777888888777776554 333
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY---TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+..+...+.+.|+.++|...|+...+.++. .+..+.......|++++|+..|++..+ ..|+...+..+..++
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l 619 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIY 619 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHH
Confidence 344455667777778888888877766643322 222223333445788888888887776 356666777777777
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMG 277 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 277 (461)
.+.|+.++|...++.... ..| +...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|
T Consensus 620 ~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 778888888888877764 344 3566777777777788888888777776 3345 344677777777888888888
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
...++++.++.|++..+.........+..+++.|.+.+++--..++
T Consensus 697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 697 QHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8888888888887777777777777777777777777766554444
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=2.5e-13 Score=133.04 Aligned_cols=315 Identities=12% Similarity=0.105 Sum_probs=247.5
Q ss_pred ccccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhC---CCCChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEM---PERDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|++ |++++|.+++..+.. .+...|..|...|-+.|+.+++...+-.. ...|...|-.+.....+.|.+++|.-
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 344 999999999998764 46788999999999999999998876543 34578899999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHH----HHHHHHhcCCHHHHHHHHHhcC
Q 012539 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA----LVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~ 151 (461)
.|.+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 44666666677888999999999999999998764434333332 4566777788888998888766
Q ss_pred C-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHHH
Q 012539 152 E-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF--------------------------VSVLRGC 200 (461)
Q Consensus 152 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------------------~~ll~~~ 200 (461)
. -+...++.++..|.+...++.|......+......+|...+ --+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 4 24467889999999999999999999888762222221111 1122233
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCcc--ChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEP--WLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~ 275 (461)
.+....+....+.....++ .+.| ++..|.-+.++|...|++.+|+.+|..+ +...+...|-.+..+|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4444444444444444443 5334 5788999999999999999999999998 22345779999999999999999
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+|++.|++++...|++..+-..|...|.+.|+.++|.+++..|.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999876
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.1e-15 Score=140.14 Aligned_cols=256 Identities=13% Similarity=0.083 Sum_probs=107.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (461)
.+...+.+.|++++|++++++......+|+... |..+...+...++.+.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 345667777888888888755444322343333 3344445566777888888888887765 3355566667776 678
Q ss_pred CCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 138 GNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 138 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888776543 456677778888888899999999988876532 34566677777888888999999999999
Q ss_pred HhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 215 SMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 215 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
..++. .| +......++..+...|+.+++..+++.. ....|+..|..+..++...|+.++|...+++..+..|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 88753 55 4777888888899999998877777666 113456678888889999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 292 HGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+.....++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887653
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.64 E-value=1.9e-12 Score=135.24 Aligned_cols=309 Identities=8% Similarity=-0.004 Sum_probs=231.8
Q ss_pred CCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHHHHcCC---hHHH
Q 012539 6 GCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPE-R-----DPIAWNAMLAGYAQCGK---SREA 73 (461)
Q Consensus 6 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A 73 (461)
+...+|.+....+.. | +...--.+.-...+.|+.++|.++|+.... + +...-+-|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 344445555444432 2 445555555556789999999999998764 2 23345578888888876 4444
Q ss_pred HHH------------HH----------HHHH-CCC-Cc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHH
Q 012539 74 LHL------------FH----------LMQI-HDV-KL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127 (461)
Q Consensus 74 ~~~------------~~----------~m~~-~~~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 127 (461)
+.+ .. .... .+. ++ +...|..+..++.. ++.++|...+....... |+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHH
Confidence 333 11 1111 111 23 56677777777766 78888999888887654 444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcC
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVG 204 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 204 (461)
..+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+ ...+..+.......|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 4455566789999999999997763 455667788888999999999999999998853 44 333334444555679
Q ss_pred cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 012539 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
++++|...++..++ ..|+...+..+..++.+.|++++|...+++. ...|+.. .++.+...+...|+.++|...++
T Consensus 591 r~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999874 4678889999999999999999999999988 5566554 67777778999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
++.+..|.++..+..+..++...|++++|...+++..+..
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987644
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=1.7e-12 Score=133.05 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=127.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC----CccChhHHHHHHHHHHh
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG----IEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~ 238 (461)
-++...|++.++++.|+.+...+.+....+-..+.++|...+..++|..++..+....+ ..++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 35667888999999999999888665566788899999999999999999998865422 12344446788999999
Q ss_pred cCCHHHHHHHHHhCCC-C-------------C--CHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 239 AGRLDEALDVINKMPM-K-------------P--HAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 239 ~g~~~~A~~~~~~~~~-~-------------p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
.+++++|..+++++.. . | |-. ....++..+.-.|+..+|++.++++....|.|......+..+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999988821 1 2 222 233345558889999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHhC
Q 012539 302 YAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~ 321 (461)
+...|...+|.+.++.....
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999776554
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=2.5e-12 Score=123.59 Aligned_cols=276 Identities=10% Similarity=0.041 Sum_probs=207.2
Q ss_pred HcCCHHHHHHHHhhCCCC--ChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHhccCCHHHHH
Q 012539 35 KCGDVDLARKMFDEMPER--DPIAWNAM-LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV--SVLSACTHLGALDQGR 109 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~ 109 (461)
-.|+++.|.+.+...++. ++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 369999999998876654 23333333 44558899999999999999874 55554333 3356778899999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CH--------HHHHHHHHHHHhCCChHHHHHHH
Q 012539 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NV--------YTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
..++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 667788888999999999999999999888743 11 23444444444455556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH 257 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 257 (461)
+.+.+. .+.+......+..++...|+.++|..++....+. .|+.... ++.+....++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665332 3456777888889999999999999999888752 4554322 233334558999999998877 44565
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 258 AG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 258 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.. ....+...|...+++++|...|+++.+..|++. .+..|..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55 566777779999999999999999999998864 788999999999999999999987644
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.59 E-value=1.2e-11 Score=126.89 Aligned_cols=189 Identities=10% Similarity=0.019 Sum_probs=151.6
Q ss_pred HHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhhc
Q 012539 133 MYSKCGNMNKAMDFFWGMKER----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-----VRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~ 203 (461)
++.+.|++.++++.|+.+..+ ...+-.++.++|...+++++|+.+|+++.... ..++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 455667777777777777732 23456678899999999999999999996643 122344457888999999
Q ss_pred CcHHHHHHHHHHhhhhcC----------CccC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 012539 204 GLVEEGREHFDSMRREYG----------IEPW---LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNAC 268 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 268 (461)
+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999976211 0122 234556788899999999999999998 3344 666888888999
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...|.+.+|+..++.+..++|++..+...++.++...++|.+|..+.+...+.
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999877654
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=4.4e-13 Score=127.43 Aligned_cols=277 Identities=14% Similarity=0.048 Sum_probs=219.5
Q ss_pred CCHHHHHHHHhhCCCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 37 GDVDLARKMFDEMPER--DP-IAWNAMLAGYAQCGKSREALHLFHLMQIHDV--KLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 37 g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
=+..+|..+|...++. |+ .....+..+|...+++++|.++|+.+.+... .-+...|.++|-.+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3568999999997643 33 3455688999999999999999999987421 12667888888665332 22222
Q ss_pred HH-HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 012539 112 HV-YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187 (461)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 187 (461)
+. .+++. -+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 22 23333 2567889999999999999999999999998864 557889888889999999999999998865 44
Q ss_pred CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 012539 188 PN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGA 263 (461)
Q Consensus 188 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 263 (461)
|. --.|..+...|.+.++++.|+-.|+.+. .+.|. ......+...+-+.|+.++|+++++++ ...| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 43 3456667788999999999999999886 56774 566677888899999999999999998 3333 4444445
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
....+...+++++|...++++.++-|++...|..+...|.+.|+.+.|..-|.-+.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 556677889999999999999999999999999999999999999999998887766443
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.1e-11 Score=119.00 Aligned_cols=277 Identities=12% Similarity=-0.012 Sum_probs=217.9
Q ss_pred cCCchHHHHHHhcCCCC--CHHHHHHH-HHHHHHcCCHHHHHHHHhhCCCCChh--HH--HHHHHHHHHcCChHHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHEP--DVVCQTAM-ISACAKCGDVDLARKMFDEMPERDPI--AW--NAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~--~~--~~li~~~~~~g~~~~A~~~~ 77 (461)
.|+++.|++......+. ++..+-.+ ..+..+.|+++.|...|.++.+.++. .. -.....+...|++++|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 59999999999887642 34444333 44457999999999999998764322 22 23367889999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchH-------HHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-------LGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
+++.+.. +-+......+...+.+.|+++++..++..+.+....++.. +|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998865 2366788888899999999999999999999987553321 3334444445556677788888887
Q ss_pred CC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh
Q 012539 151 KE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 151 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
++ .++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+. .+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 63 47889999999999999999999999999873 5555221 333444569999999999998764 344577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
...++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|..++++...+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8889999999999999999999998 667999999999999999999999999999987653
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.1e-11 Score=117.83 Aligned_cols=279 Identities=10% Similarity=-0.043 Sum_probs=121.7
Q ss_pred HcCCHHHHHHHHhhCCCC--C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 35 KCGDVDLARKMFDEMPER--D-PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
..|+++.|.+.+.+..+. + ...+-....++.+.|++++|.+.+.+..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 345555555555544332 1 1222233344445555555555555554422111111222234444455555555555
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHH----HHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWT----SVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
++.+.+.. |.++.+...+...|.+.|++++|.+.+....+. +...+. ....++...+..+++.+.+..+...
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555543 334444455555555555555555555554421 211111 0011112222222233333333332
Q ss_pred CC---CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhH-HHHHHHH--HHhcCCHHHHHHHHHhC-CCCCC
Q 012539 185 GV---RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH-YGCLVDL--YGRAGRLDEALDVINKM-PMKPH 257 (461)
Q Consensus 185 g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~--~~~~g~~~~A~~~~~~~-~~~p~ 257 (461)
.. +.+...+..+...+...|+.++|.+++++..+. .|+... ...++.. ....++.+.+.+.+++. ...|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 11 114444455555555555555555555555432 222211 0001111 12234445555555443 22232
Q ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHH--HhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 258 A---GAWGALLNACRMYKNTEMGELASRK--LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 258 ~---~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
. ....++...+.+.|++++|.+.|+. ..+..|++. .+..+...+.+.|+.++|.+++++-
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 2334445555666666666666663 334444432 3456666666666666666666553
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.2e-12 Score=116.10 Aligned_cols=302 Identities=14% Similarity=0.153 Sum_probs=219.5
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC----------------CChh--------
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPE----------------RDPI-------- 55 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~~~~-------- 55 (461)
+.+.|++++|+.-|+... .||..+--.|+-.+..-|+-++..+.|.+|.. |+..
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 467899999999998865 47777655566666667777887777777641 0000
Q ss_pred -------------------------------------HHH------------------HHHHHHHHcCChHHHHHHHHHH
Q 012539 56 -------------------------------------AWN------------------AMLAGYAQCGKSREALHLFHLM 80 (461)
Q Consensus 56 -------------------------------------~~~------------------~li~~~~~~g~~~~A~~~~~~m 80 (461)
-|. .-...|.++|+++.|+++++-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 010 0112467889999999988877
Q ss_pred HHCCCCcCHHHHHHH--HHH----------------------------------HhccCCHHHHHHHHHHHHHcCCCCch
Q 012539 81 QIHDVKLNEVSMVSV--LSA----------------------------------CTHLGALDQGRWAHVYIERNRLKMTV 124 (461)
Q Consensus 81 ~~~~~~p~~~t~~~l--l~~----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~ 124 (461)
.+.+-+.-...-+.+ +.. ....|++++|...+.+.+...-.-..
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 654322211111111 111 11236677777777777665433333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
..|| +.-.+-+.|++++|+..|-.+. ..++...-.+.+.|-...+..+|++++.+.... ++.|......|...|-
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 4444 4556677888888888887665 456777777888888888999999998887664 5556788888999999
Q ss_pred hcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNA-CRMYKNTEMGEL 279 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~a~~ 279 (461)
+.|+-.+|.+.+-.--+ -++.+.++...|...|....-+++|...|++. -++|+..-|..|+.. +++.|+++.|..
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999998765432 34457889999999999999999999999998 568999999999988 578899999999
Q ss_pred HHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 280 ASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
+++...+..|.+......|++.+...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999988775
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=4.7e-14 Score=129.40 Aligned_cols=251 Identities=14% Similarity=0.158 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhhC-C----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcc
Q 012539 28 AMISACAKCGDVDLARKMFDEM-P----ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 102 (461)
.+...+.+.|++++|++++++. . ..|+..|..+.......+++++|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 5577788889999999998542 2 235667777777778888899999999988876532 44555555555 678
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCChHHHHHH
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-----ERNVYTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 177 (461)
+++++|.++.....+.. +++..+..++..+.+.|+++++..+++... +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766543 455566778888888999999988888754 24677888888889999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 012539 178 FSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK 255 (461)
Q Consensus 178 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 255 (461)
|++..+. .|+ ......++..+...|+.+++..++....+. .+.++..+..+..+|...|+.++|+..|++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9998884 554 666778888888899999988888887653 2556777888899999999999999999887 334
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 256 P-HAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 256 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
| |+.....+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 566777777889999999999988887654
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.2e-11 Score=109.32 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=172.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHhcCCH
Q 012539 63 GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK--MTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 140 (461)
++-...+.++++.-.+.....|+.-+...-+....+.-...++++|+.+|+.+.+..+- .|..+|+.++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 33333444555555555555544333333333333334455555666666555554210 1333443332111111111
Q ss_pred HH-HHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 141 NK-AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 141 ~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
.- |..++ .+.+--+.|...+.+-|+..++.++|+..|++..+. .|. ...|+.+..-|....+...|.+-++.+++
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 11 11111 111112334445566677788999999999999884 454 56677777889999999999999998874
Q ss_pred hcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 219 EYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 219 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
+.| |-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.++...+..+...|
T Consensus 393 ---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 ---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 445 6788999999999999999999999998 5666 677999999999999999999999999999887777899
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 296 VLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..|+.+|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=4e-11 Score=115.85 Aligned_cols=278 Identities=10% Similarity=-0.024 Sum_probs=130.5
Q ss_pred cCCchHHHHHHhcCCC--CCH-HHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC--hhHHHHHHHHHHHcCChHHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHE--PDV-VCQTAMISACAKCGDVDLARKMFDEMPE--RD--PIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
.|+++.|.+.+.+..+ |++ ..+-....++.+.|+++.|...|++..+ |+ ....-.....+.+.|++++|++.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556666665555432 332 2222333445555666666666655322 11 122223355555566666666666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-------HhcCCHHHHHHHHHhc
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY-------SKCGNMNKAMDFFWGM 150 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~ 150 (461)
+++.+.. +-+...+..+...+...|+++++.+.+..+.+.+..+.......-...+ ......+...+.++..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 6665543 1133455555555666666666666666666554332221111001111 1111222333334433
Q ss_pred CC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHH-HHHHhhcCcHHHHHHHHHHhhhhcCCcc
Q 012539 151 KE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT--FVSV-LRGCCVVGLVEEGREHFDSMRREYGIEP 224 (461)
Q Consensus 151 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p 224 (461)
++ .+...+..++..+...|+.++|.+++++..+. .||... +..+ .......++.+.+.+.++...+...-.|
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 32 25555555666666666666666666665553 222221 0111 1111223455555555555543211111
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINK--M-PMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 113444555556666666666666662 2 334555555555555666666666666666543
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.7e-12 Score=120.53 Aligned_cols=274 Identities=13% Similarity=0.040 Sum_probs=218.0
Q ss_pred chHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHH-
Q 012539 8 LGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALHLF- 77 (461)
Q Consensus 8 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~- 77 (461)
..+|...|.+.+. + +..+-..+..+|...+++++|.++|+.+.+. +...|.+.+...-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 3577888888543 3 3456677889999999999999999988753 67788888765432 2233333
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (461)
+.+.... +-.+.+|-.+.+.|.-.++.+.|++.|++.++.. +....+|+.+..-+....++|.|...|+.....|+..
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 3344332 4577899999999999999999999999999864 4478999999999999999999999999988776665
Q ss_pred HH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHH
Q 012539 158 WT---SVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCL 232 (461)
Q Consensus 158 ~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 232 (461)
|| -|...|.+.++++.|.-.|++..+ +.|. .+....+...+.+.|+.++|+++++++. -+.| |+..--..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHR 563 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHH
Confidence 55 566789999999999999999988 4554 5666677778889999999999999886 4455 45555556
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
+..+...+++++|+..++++ ...|+.. ++..+...|.+.|+.+.|..-|--+.+++|+-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 77888999999999999999 5567665 566666679999999999999999999999853
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1e-10 Score=105.82 Aligned_cols=304 Identities=11% Similarity=0.100 Sum_probs=207.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH
Q 012539 14 VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 89 (461)
++-.....+..+|..||.+.++--..+.|.+++++-... +..+||.+|.+-.- ....++..+|....++||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 444445567789999999999999999999999987643 67789988876433 2337888999999999999
Q ss_pred HHHHHHHHHHhccCCHHHH----HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH-HHHHHHhcCC------------
Q 012539 90 VSMVSVLSACTHLGALDQG----RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK-AMDFFWGMKE------------ 152 (461)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------------ 152 (461)
.|+|+++++.++.|+++.+ .+++.+|.+.|++|...+|..+|..+.+-++..+ |..+..++..
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999987654 5778888999999999999999999988887655 4444444431
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG----VRPN---EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
.|...|...++.|....+.+-|.++-.-+.... +.|+ .+-|..+..+.++....+.-...|+.|.-. -.-|+
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~ 432 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPH 432 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCC
Confidence 255567777777778888888877766554311 3343 223556777778888888888899888764 56677
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcC-Ch--------------------HHHHHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYK-NT--------------------EMGELAS 281 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~-~~--------------------~~a~~~~ 281 (461)
..+...++.+..-.|.++-.-+++.++ +-.-+...-.-++..+++.+ +. +..+..-
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 777788888888888877777776665 10011111111111112111 11 0001111
Q ss_pred HHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 282 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
.++.+.+ -.+...+..+..+.+.|..++|.+++..+.+.+-
T Consensus 513 ~R~r~~~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 513 IRQRAQD-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHhcc-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 1111111 1234566777888999999999999999865543
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=6.4e-11 Score=108.81 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHH
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFS 179 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 179 (461)
|+.-.+.+-++..++.. +.+...|--+..+|....+-++-.+.|+.... .|..+|..-...+.-.+++++|..-|+
T Consensus 340 g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555543 22333355667778888888888888877653 356677777777777888999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012539 180 LMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH 257 (461)
Q Consensus 180 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 257 (461)
+.+. +.|. ...|.-+.-+..+.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .+.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9887 4554 66676676677789999999999999987 45556889999999999999999999999887 33443
Q ss_pred ---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 258 ---------AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 258 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+.+--+++.. .=.+++..|..+++++.+++|....+|..|...-.+.|+.++|+++|++-..
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222222222 2238999999999999999999999999999999999999999999997643
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=6.4e-11 Score=105.26 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=158.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
.....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788888899999999998887653 356778888888999999999999999887753 334566777788
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
.+...|++++|...+..+............+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 888899999999999988753222223556777888899999999999999887 3334 35577788888999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
|...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999988888878888889999999999999999887754
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.7e-10 Score=104.40 Aligned_cols=240 Identities=12% Similarity=0.152 Sum_probs=137.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
...++.+||.+.++--..+.|.+++++-.....+.+..+||.++.+-. +..++.+..+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 456677777777777777777777777766666677777777765532 2233666667777777777777777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH-HHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE-GRE 211 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~ 211 (461)
+.++.|+++.|.+ .|++++.+|++.|+.|...+|..+|..+.+.++..+ +..
T Consensus 282 c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 282 CAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 7777776666543 345556666666666666666666665555544422 333
Q ss_pred HHHHhhhhc---CCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC--C-----CCCC---HHHHHHHHHHHHhcCCh
Q 012539 212 HFDSMRREY---GIEP----WLEHYGCLVDLYGRAGRLDEALDVINKM--P-----MKPH---AGAWGALLNACRMYKNT 274 (461)
Q Consensus 212 ~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~--~-----~~p~---~~~~~~ll~~~~~~~~~ 274 (461)
++.++.... .++| +...+..-++.+.+..+.+-|.++-.-. + +.|+ ...|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 333332110 1222 2334445555555666655555544332 0 1122 12445555555555556
Q ss_pred HHHHHHHHHHhh-ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 275 EMGELASRKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 275 ~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
+.....|+.+.- ..-+++.+...++++..-.|.|+-..+++..++..|-
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 666666655542 2222344666666677777777777777777776663
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.1e-10 Score=100.29 Aligned_cols=288 Identities=14% Similarity=0.132 Sum_probs=172.2
Q ss_pred cCCHHHHHHHHhhCCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHhccCCHH
Q 012539 36 CGDVDLARKMFDEMPERDPIAW---NAMLAGYAQCGKSREALHLFHLMQIHDVKLNE------VSMVSVLSACTHLGALD 106 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~ 106 (461)
..+.++|.++|-+|.+-|+.++ -+|.+.|-+.|..+.|+.+-+.+.++ ||. ...-.+..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4567777777777766554443 35667777777777777777766653 322 23444556667777777
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH--------HHHHHHHHHHHhCCChHHHHHHH
Q 012539 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV--------YTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.|+.+|..+...+ ..-....--|+..|-+..+|++|+++-+++.+-+. ..|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777777776644 22334445577777777777777777665543222 23444455555566777777777
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012539 179 SLMKQAGVRPNEVTF-VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP 256 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 256 (461)
.+..+. .|+.+-- ..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 777664 3332222 23444566677777777777777653 22222456666777777777777777777665 3344
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh---hcCChhHHHHHHHHHHhCCCccCCcccE
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA---ESKNWDRVINVRQIMKAKGVKKLPGCSV 331 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 331 (461)
....-..+-.......-.+.|.....+-....|.-. .+..|+.... .-|.+.+....++.|....++..|.+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 444444444444444445666666655555566532 3444444332 3355777777888887766666555443
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=1.6e-11 Score=119.99 Aligned_cols=268 Identities=14% Similarity=0.109 Sum_probs=195.3
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 012539 75 HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154 (461)
Q Consensus 75 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 154 (461)
.++-.+...|+.|+.+||..++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999998 9999998888889999999999999999988776 788
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
..+|+.|..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8999999999999999865 333322 12234445566666666666665543222344443 34566
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHH
Q 012539 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
...-.|-++.+++++..+|...-......++.-+..... ++.-....+...+ ..++.+|..++.+-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 667788889999999888643221122223544444333 3444444444444 3456799999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccc
Q 012539 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382 (461)
Q Consensus 314 ~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~ 382 (461)
++.+|++.|++..+.+.|..+-+. +....++...+.|++.|+.||..+....+.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g~---------------~~~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLGI---------------NAAQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhcC---------------ccchHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 999999999999999999765431 112345568888999999999877554333
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.1e-10 Score=104.36 Aligned_cols=262 Identities=13% Similarity=0.023 Sum_probs=209.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
++...-.-..-+...+++.+.+++++...+.. ++....+..-|..+...|+..+-..+=.++++.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34445555667778899999999999998864 4566666666778888888777777767777763 667788888999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKERN---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 209 (461)
-|.-.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..|...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999766433 478999999999999999999999988663 222222233345567889999999
Q ss_pred HHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 012539 210 REHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKMP--------MKP-HAGAWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~ 279 (461)
.++|.... ++-| |+...+-+.-.....+.+.+|..+|+..- .++ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999875 6666 56777777777778889999999987761 112 34478888999999999999999
Q ss_pred HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 280 ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+++.+.+.|.+..+|.+++-+|...|+++.|.+.|.+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987643
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=9.7e-10 Score=100.60 Aligned_cols=287 Identities=14% Similarity=0.139 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE--VSMVSVLSA 98 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~ 98 (461)
.|+..+-...-.+-+.|....|+..|......-+..|.+-+....-.-+.+.+ ..... |...|. ..=-.+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHHHH
Confidence 45444444445556778888888888776654344443333222212222222 22221 222111 112234567
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 172 (461)
+....+.+++.+-.......|++.+...-+....+.-...++++|+.+|+++.+. |..+|+.++-. ++.+-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~sk 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHH
Confidence 7777788999999999999998888888777777888899999999999999864 55677776533 333221
Q ss_pred ---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHH
Q 012539 173 ---KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 173 ---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
-|..+++ -...+| .|.-.+.+.|+-.++.++|..+|++.+ .+.|. ...|+.+..-|....+...|.+-
T Consensus 315 Ls~LA~~v~~---idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRAL---kLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 315 LSYLAQNVSN---IDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRAL---KLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHH---hccCCc--cceeeehhHHHHHHhHHHHHHHHHHHH---hcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 1222221 122444 466667788888999999999999987 45664 67889999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 249 INKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 249 ~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
++.. .+.| |-..|..|.++|...+...-|.-.|+++.+..|.|+..|.+|..+|.+.++.++|++.|+.....|
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9988 5555 667999999999999999999999999999999999999999999999999999999999877654
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.2e-09 Score=100.16 Aligned_cols=296 Identities=13% Similarity=0.096 Sum_probs=194.3
Q ss_pred HHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 30 ISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 30 i~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
+.+=-..|++..|.++|++-. +|+...|++.|..=.+-...+.|..++++.+- +.|+..+|.--...-.+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 333334455555555555422 45666666666666666666666666666654 34666666555555555666666
Q ss_pred HHHHHHHHHHcCCC--CchHHHHHHHHHHHhcCCHHHHHHHHHhcC----------------------------------
Q 012539 108 GRWAHVYIERNRLK--MTVTLGTALVDMYSKCGNMNKAMDFFWGMK---------------------------------- 151 (461)
Q Consensus 108 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------------------------- 151 (461)
+..++..++..--. .+...+.+....-.++..++.|.-+|+-..
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 66666655542101 112223333333333444444444443211
Q ss_pred ----------C---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hhcCcHHH
Q 012539 152 ----------E---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-------VTFVSVLRGC---CVVGLVEE 208 (461)
Q Consensus 152 ----------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~g~~~~ 208 (461)
. -|-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1 14567777777777889999999999999875 56632 2233222232 24678899
Q ss_pred HHHHHHHhhhhcCCccChhHHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 209 GREHFDSMRREYGIEPWLEHYGCLVDLYG----RAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
+.++|+..++ -++....|+.-+--+|+ ++.++..|.+++... |.-|...+|...|..-.+.++++....++++
T Consensus 385 tr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999988874 34445667766666555 678899999998776 7779999999999998999999999999999
Q ss_pred HhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCccc
Q 012539 284 LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS 330 (461)
Q Consensus 284 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s 330 (461)
.++..|.+..+|.-.+..-...|+++.|..+|....++.....|..-
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 99999999888888888888889999999999888776554444433
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=4.7e-10 Score=112.63 Aligned_cols=261 Identities=11% Similarity=-0.046 Sum_probs=186.8
Q ss_pred ChhHHHHHHHHHHH--c---CChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHh---------ccCCHHHHHHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQ--C---GKSREALHLFHLMQIHDVKLN-EVSMVSVLSACT---------HLGALDQGRWAHVYIER 117 (461)
Q Consensus 53 ~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 117 (461)
+...|...+.+-.. . +..++|+.+|++..+. .|+ ...|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55666666665322 1 3467999999999885 454 445555544433 23458899999999998
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHH
Q 012539 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-VTF 193 (461)
Q Consensus 118 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 193 (461)
.. |.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 55778888899999999999999999998763 3 5678899999999999999999999999885 4543 233
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHh
Q 012539 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRM 270 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~ 270 (461)
..++..+...|++++|...++++.+. ..| ++..+..+..+|...|++++|...+.++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999988653 234 4556778888999999999999999987 4455544 44555555677
Q ss_pred cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
.| +.+...++.+.+.....+..+..+...|.-.|+-+.+... +++.+.|-
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777777777654322222222366667777777777666 77776653
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.36 E-value=2.9e-10 Score=112.69 Aligned_cols=212 Identities=11% Similarity=0.074 Sum_probs=127.0
Q ss_pred ccccCCchHHHHHHhcCCC--CCH--HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcC----Ch
Q 012539 2 YAELGCLGYCQKVFDGIHE--PDV--VCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCG----KS 70 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g----~~ 70 (461)
|-..|++++|.+.|..... +|. ..+--|..+|.+.|+++.|...|+...+. +..+...|...|+..+ ..
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 5678999999999877653 443 33445778899999999999999987643 4566667777777665 45
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHH----HHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 012539 71 REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI----ERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 146 (461)
+.|..++.+..+.- +.|...|..+...+....-+.. ..++..+ ...+.++.+.+.|.+...+...|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 66666666666543 3466677666666654433332 5444433 3445556677778888888888888888888
Q ss_pred HHhcCCC-------C------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 147 FWGMKER-------N------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 147 ~~~~~~~-------~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
|+..... | +.+-..+...+-..++++.|.++|...... -|. ...|.-++......++..+|...
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 8765421 1 112223444444555566666666665543 233 22233332222223444555555
Q ss_pred HHHhh
Q 012539 213 FDSMR 217 (461)
Q Consensus 213 ~~~~~ 217 (461)
++...
T Consensus 553 lk~~l 557 (1018)
T KOG2002|consen 553 LKDAL 557 (1018)
T ss_pred HHHHH
Confidence 55444
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3.3e-12 Score=83.11 Aligned_cols=50 Identities=26% Similarity=0.509 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 012539 52 RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 101 (461)
||+++||+||.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4.1e-12 Score=82.65 Aligned_cols=50 Identities=32% Similarity=0.649 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998874
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=9.7e-09 Score=92.71 Aligned_cols=275 Identities=12% Similarity=0.066 Sum_probs=181.0
Q ss_pred cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 112 (461)
.|+|..|+++..+-.+. .+..|..-+.+--+.|+.+.|-..+.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 67888888887764432 344555555666677888888888877776433445555666666677778888888888
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN-----------VYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 113 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
.++.+.+ +.++.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777766 4556666777888888888888888888777531 235666666555555554444455544
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHH----HHHhCCCCCC
Q 012539 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD----VINKMPMKPH 257 (461)
Q Consensus 182 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~p~ 257 (461)
-+. .+-+...-.+++.-+.+.|+.++|.++..+..++ +..|+.. .+ -...+-++...-.+ .....|..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 332 3444455556666777788888888888777765 5555411 11 12233444433333 333334333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..+.+|...|.+++.+.+|...|+...+..|.. .+|..+..++.+.|+..+|.+++++-..
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 577777777888888888888888877777654 5888888888888888888888877664
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=9.4e-10 Score=97.69 Aligned_cols=193 Identities=11% Similarity=0.045 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+.+..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4567777777777888888888877776643 2245566666677777777777777777777654 3344555666677
Q ss_pred HHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
|...|++++|.+.|++... .....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777766543 123455556666666666666666666665532 2234455555556666666666
Q ss_pred HHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
|...+++.... .+.++..+..++..+...|+.++|..+.+.
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666665442 122344444555555555666666555444
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=3.9e-09 Score=95.18 Aligned_cols=251 Identities=13% Similarity=0.049 Sum_probs=171.5
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 012539 67 CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 146 (461)
.|+|.+|.++..+-.+.+-. ....|.....+....|+.+.+..++.++.+....++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57788888777776665533 23445555666777778888888877777764466666667777777777887777776
Q ss_pred HHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 147 FWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-------VTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 147 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
.++.. .+++........+|.+.|++.+...++.+|.+.|.-.|. .++..++.-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66544 456777777778888888888888888888777655442 35677777666666666666666666
Q ss_pred hhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
-. ...-++..-.+++.-+.++|+.++|.+++++. +..-|.. -..+-.+.+.++.+.-++..++..+..|+++..+
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 44 34445566667777777888888888777666 2222333 1222335667777777777777777777777777
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 296 VLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+|...|.+.+.|.+|.+.|+...+.+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 888888888888888888887665544
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1e-09 Score=105.61 Aligned_cols=232 Identities=14% Similarity=0.125 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCCchH-HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERN-----R-LKMTVT-LGTALVDMYSKCGNMNKAMDFFWGMKE-------R- 153 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 153 (461)
..|...+...|...|+++.|...+.+.++. | ..|.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667888999999999999999988764 2 123332 334577889999999999999988762 1
Q ss_pred ---CHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC--
Q 012539 154 ---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-----AGVR-PN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYG-- 221 (461)
Q Consensus 154 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 221 (461)
-..+++.|..+|.+.|++++|...++...+ .|.. |. ..-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235788888899999999998888877643 1222 22 23356677788899999999999987766443
Q ss_pred CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 012539 222 IEPW----LEHYGCLVDLYGRAGRLDEALDVINKM-------PM--KPH-AGAWGALLNACRMYKNTEMGELASRKLVEL 287 (461)
Q Consensus 222 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 287 (461)
..++ ..+++.|...|...|++++|.++++++ .. .+. ....+.|...|.+.+++++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467999999999999999999999887 11 222 236777888899999999999999887643
Q ss_pred ----cCC---CcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 288 ----ETK---NHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 288 ----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+|. ...+|..|+.+|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 345889999999999999999999988753
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=4e-09 Score=92.43 Aligned_cols=217 Identities=13% Similarity=0.116 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 145 (461)
++++|.++|.+|.+.. +-+..+-.++.+.+-+.|..|.|+.+|+-+.++.--+. ....-.|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4445555555554421 11223334444444445555555555544443211000 1112234444444555555555
Q ss_pred HHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 146 FFWGMKERN---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN----EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 146 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-.+. ...|--|...+....+++.|..++.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 554444321 12334444445555555555555544444333322 12233344444444444555554444432
Q ss_pred hcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 219 EYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG--AWGALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 219 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
. .| .+..--.+.+.+...|+++.|.+.++.+ .-.|+.. +...|..+|...|+.++....+.++.+..+
T Consensus 209 a---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 209 A---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred h---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 1 22 1222333444444455555555444444 1122221 344444445555555555554444444433
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.1e-09 Score=98.04 Aligned_cols=316 Identities=11% Similarity=0.050 Sum_probs=171.4
Q ss_pred ccccCCchHHHHHHhcCCC--C--C----HHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChH
Q 012539 2 YAELGCLGYCQKVFDGIHE--P--D----VVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSR 71 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~ 71 (461)
|.+...+.+|++.++-.+. | + +...+.+.-.+.+.|+++.|+.-|+.+.+ ||..+-..|+-++..-|+.+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHH
Confidence 4566778888888765442 2 1 23455555567899999999999998653 56665555666666789999
Q ss_pred HHHHHHHHHHHCCCC------------cCHHHHHHHHH-----HHhccC--CHHHHHHHHHHHHHcCCCCchH-------
Q 012539 72 EALHLFHLMQIHDVK------------LNEVSMVSVLS-----ACTHLG--ALDQGRWAHVYIERNRLKMTVT------- 125 (461)
Q Consensus 72 ~A~~~~~~m~~~~~~------------p~~~t~~~ll~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~------- 125 (461)
+..+.|.+|..--.. |+....+..+. -..+.. +.++++-.-..++.--+.|+-.
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 999999999653222 23222222221 111100 1111111111111111111100
Q ss_pred --------------HHHHHHHHHHhcCCHHHHHHHHHhc-----------------------------------------
Q 012539 126 --------------LGTALVDMYSKCGNMNKAMDFFWGM----------------------------------------- 150 (461)
Q Consensus 126 --------------~~~~li~~~~~~g~~~~A~~~~~~~----------------------------------------- 150 (461)
.--.-..-|.+.|+++.|.++++-.
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 0000112344555555555554433
Q ss_pred ------------------------------CCCCHHHHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 151 ------------------------------KERNVYTWTSVI---GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 151 ------------------------------~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
...|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qia 565 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIA 565 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 333322211111 1233344444444444444332 122334444445
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~ 275 (461)
+.|....+..+|.+++..... -++-|+...+.|.+.|-+.|+-..|.+..-+- ..- .+..+..-|..-|....-.+
T Consensus 566 niye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 555555555566665544421 23335677777777777777777777764433 222 24445444555566666778
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.++.+|+++.-+.|.-..-...+..++.+.|++.+|.++++...+
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888899888888887553334455666789999999999998854
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.3e-09 Score=106.49 Aligned_cols=333 Identities=15% Similarity=0.110 Sum_probs=172.0
Q ss_pred cccCCchHHHHHHhcCCCCCHHHHHHHHHHHH------HcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVCQTAMISACA------KCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKSREA 73 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 73 (461)
.++|+.+.|+..|....+-|+...++++.... ....+..+..++...- ..|++..+.|.+.|.-.|++..+
T Consensus 210 ~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred HhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHH
Confidence 56777888888887776655555554444322 1223445555555432 23677777777777777777777
Q ss_pred HHHHHHHHHCCCC--cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 74 LHLFHLMQIHDVK--LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 74 ~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
..+...+...... .-...|..+.+++-..|++++|...|.+..+......+..+--|..+|.+.|+++.|...|+.+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 7777666653211 12234666777777777777777777766665422223333456777777777777777777665
Q ss_pred C--C-CHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHc-------------------------------------CCC
Q 012539 152 E--R-NVYTWTSVIGGLAMNG----AGEKSLELFSLMKQA-------------------------------------GVR 187 (461)
Q Consensus 152 ~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~-------------------------------------g~~ 187 (461)
. | +..+...|...|+..+ ..+.|..++.+..+. +..
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC
Confidence 3 2 3344444444454443 234444444443332 222
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC--CccCh------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012539 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG--IEPWL------EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA 258 (461)
Q Consensus 188 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 258 (461)
+.....|.+...+...|++++|...|........ ..++. .+--.+...+-..++.+.|.+.|..+ ...|.-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 3333444444444444444444444444432100 01111 11112333333344444444444444 222332
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeC
Q 012539 259 G-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD 335 (461)
Q Consensus 259 ~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~ 335 (461)
+ .|--++......++..+|...++.+...+..++.++..+.+.|.....|..|.+-|..+.+.-...+..+|.|.++
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 2 2222222233345556666666666666666666666666666666666666665555554433333334444443
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=1.1e-08 Score=97.48 Aligned_cols=294 Identities=13% Similarity=0.053 Sum_probs=188.6
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHH
Q 012539 32 ACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108 (461)
Q Consensus 32 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 108 (461)
.+-..|++..|..++.+.-+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---+++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 33345555555555554332 1344565666666666666666666666554 344555554444444445666666
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
.++++..++. ++.-...|..+...+-+.++++.|...|..-.+ | .+..|-.|...=-+.|..-.|..+|++....+
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 6666666654 244455566666666666666666666655442 2 34566666666666666677777777665543
Q ss_pred CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 012539 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265 (461)
Q Consensus 186 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 265 (461)
+-|...|...|..=.+.|+.+.|..+..+.++ .++.+...|.--|.+..+.++-.++.+.+++- +.|+.+.-++.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia 824 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIA 824 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHH
Confidence 33456666666666677777777776666655 33445556666666666666655555555544 35666666777
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD 335 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~ 335 (461)
..+....+++.|...|.+..+.+|++..+|..+...+.+.|.-++-.+++...... .|.-|..|..+.
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 77888889999999999999999999999999999999999999999999887653 344456665443
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=1.4e-08 Score=96.87 Aligned_cols=312 Identities=11% Similarity=-0.001 Sum_probs=177.4
Q ss_pred ccccCCchHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--------CC-----------------
Q 012539 2 YAELGCLGYCQKVFDGI---HEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--------RD----------------- 53 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~----------------- 53 (461)
|++..-++.|++++++. +..+..+|.+-...--..|+.+...++.++-.. -+
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 34444556666666553 234666666555555566666666666554210 00
Q ss_pred --------------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012539 54 --------------------PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113 (461)
Q Consensus 54 --------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (461)
-.+|+.-...|.+.+.++-|..+|...++. .+-+...|..+...--..|..+....+++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 113333334444444445555555544442 11233344444444444455555555555
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 012539 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190 (461)
Q Consensus 114 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 190 (461)
++...- +.....|.....-+-..|++..|+.++...-+ .+...|-+-+..-..+.+++.|..+|.+... ..|+.
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTe 651 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTE 651 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcc
Confidence 555543 33334444445555556666666666655542 2445666666666667777777777776655 34555
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 012539 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNA 267 (461)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 267 (461)
..|..-+..-.-.++.++|.+++++.++. -|+ ...|..+...+-+.++++.|...|..- ..-|+ +..|-.|...
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 55555555555566777777777666643 233 455666666677777777777666554 22343 3366666666
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
--+.|.+-.|..++++..-.+|++...|...+++-.+.|+.+.|..+..+..+
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777777777777777777777777777766655544
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=1.2e-09 Score=109.67 Aligned_cols=257 Identities=9% Similarity=-0.031 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHH---------cCChHHHHHHHHHHHHC
Q 012539 21 PDVVCQTAMISACAK-----CGDVDLARKMFDEMPER---DPIAWNAMLAGYAQ---------CGKSREALHLFHLMQIH 83 (461)
Q Consensus 21 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 83 (461)
.+...|...+.+-.. .+++++|..+|++..+. +...|..+..+|.. .+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 345556555554321 23468999999987754 34567766665542 24478999999999986
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN-VYTWTS 160 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 160 (461)
+ +-+..++..+...+...|++++|...++++++.+ |.+...+..+...+...|++++|...|++..+ |+ ...+..
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 4 2366788888888899999999999999999986 55677788899999999999999999999874 33 233444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHh
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGR 238 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 238 (461)
++..+...|++++|+..++++.... .|+ ...+..+..++...|+.++|...+..+... .|+ ....+.+...|..
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhc
Confidence 5556777899999999999987653 354 445666777888999999999999887542 443 4445566667777
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 239 AGRLDEALDVINKM----PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 239 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
.| ++|...++.+ ...+....+..++ +.-+|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 77 4666666655 3334444443333 4556777776666 6666543
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=6.7e-10 Score=97.24 Aligned_cols=225 Identities=12% Similarity=0.020 Sum_probs=163.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCC
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNG 169 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 169 (461)
+.+..+|.++|.+.+|...++..++.. |-+.+|..|-..|.+..+.+.|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 455667777777777777777766653 3444555677777777777777777776653 2 4444445556666677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (461)
+.++|.++|+...+.. +.+......+...|.-.++.+-|+.++++++.- |+. +++.|..+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776642 234445555556666677778888888777653 543 5667777777777777888777777
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 250 NKM---PMKPH--AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 250 ~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
++. ...|+ ..+|..+-......||...|.+.|+.....+|++..+++.|...-.+.|++++|..++...+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 665 22343 34788888888899999999999999999999999999999999999999999999999876643
No 61
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.21 E-value=3.9e-08 Score=97.33 Aligned_cols=287 Identities=14% Similarity=0.085 Sum_probs=212.9
Q ss_pred HHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHH
Q 012539 33 CAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109 (461)
Q Consensus 33 ~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (461)
..-.|++++|.+++.++.+. +...|.+|...|-+.|+.++++..+-..-..+ +-|..-|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 33449999999999998754 57799999999999999999999876655543 336788999999999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH----HHH----HHHHHHHHhCCChHHHHHHHHHH
Q 012539 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV----YTW----TSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~g~~~~A~~~~~~m 181 (461)
-.+.++++.. |++...+--=..+|-+.|+...|...|.++.+.++ .-. ..++..|..+++.+.|++.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999987 55555555578899999999999999998875322 222 23455677788889999999988
Q ss_pred HHcC-CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh--------------------------cCCccChhHHHHHH-
Q 012539 182 KQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE--------------------------YGIEPWLEHYGCLV- 233 (461)
Q Consensus 182 ~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~p~~~~~~~li- 233 (461)
...+ -..+...++.++..+.....++.|......+... .++.++..++..++
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 6622 2334556677777788888888887777666430 01223333311122
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC-CcchHHHHHHHHhhcCChh
Q 012539 234 DLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~ 309 (461)
-.-.+.+...+++.-+..- ...-+...+.-+..++...|++.+|..++..+....+. +...|..++.+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 2223445555665544333 22234557888889999999999999999999987654 5678999999999999999
Q ss_pred HHHHHHHHHHhC
Q 012539 310 RVINVRQIMKAK 321 (461)
Q Consensus 310 ~a~~~~~~m~~~ 321 (461)
+|.+.++.....
T Consensus 467 ~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 467 EAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=5e-09 Score=100.91 Aligned_cols=231 Identities=16% Similarity=0.109 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHc-----C--CC
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIH-----D-VKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERN-----R--LK 121 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 121 (461)
+...|...|...|+++.|..+++..++. | ..|...+ .+.+...|...+++++|..+|..+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445889999999999999999887663 2 1344443 334667888999999999999988752 2 12
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----------RNV-YTWTSVIGGLAMNGAGEKSLELFSLMKQA---GVR 187 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 187 (461)
.-..+++.|...|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345667778889999999999888876542 222 34677788899999999999999876542 123
Q ss_pred CC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc----C-CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 012539 188 PN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREY----G-IEPW-LEHYGCLVDLYGRAGRLDEALDVINKM----- 252 (461)
Q Consensus 188 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----- 252 (461)
++ ..+++.|...|...|++++|.++|+.++... + ..+. ...++.|...|.+.++..+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 4578899999999999999999999887643 1 1222 456778888999999999888888775
Q ss_pred ---CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 253 ---PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 253 ---~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+..|+.. +|..|...|...|+++.|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3346655 899999999999999999999998873
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.5e-09 Score=95.13 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=195.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (461)
+.|.++|.+.|.+.+|...|+.-+.. .|-+.||..+-.+|.+..+...|..++.+-+.. .|-++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67999999999999999999988875 677788888999999999999999999988876 366666667788899999
Q ss_pred CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 138 GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 138 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|.-.++++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998874 36777777888899999999999999999999866 66788888888889999999999998
Q ss_pred HhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 215 SMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 215 ~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+.... --.|+ ..+|-.+.......|++.-|.+.|+-. ...| +...++.|.-.-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88753 33344 467888888888899999999999877 2233 4558899888889999999999999999998887
Q ss_pred C
Q 012539 291 N 291 (461)
Q Consensus 291 ~ 291 (461)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 3
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=7.1e-09 Score=95.50 Aligned_cols=146 Identities=14% Similarity=-0.018 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHCC-CCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 012539 68 GKSREALHLFHLMQIHD-VKLN--EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 68 g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 144 (461)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...+.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555566555555421 1121 2335555555556666666666666665543 334555566666666666666666
Q ss_pred HHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 145 DFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 145 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|...
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66665542 2 3445555555556666666666666665552 333221111111222344555665555443
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=3.2e-08 Score=91.20 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhh
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCV 202 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 202 (461)
+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.|++..+ +.|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44444455555555555555544432 2344555555555555555555555555544 2332 3344444444445
Q ss_pred cCcHHHHHHHHHHhh
Q 012539 203 VGLVEEGREHFDSMR 217 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~ 217 (461)
.|++++|.+.|+...
T Consensus 145 ~g~~~eA~~~~~~al 159 (296)
T PRK11189 145 GGRYELAQDDLLAFY 159 (296)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555444
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.4e-08 Score=88.69 Aligned_cols=267 Identities=9% Similarity=-0.014 Sum_probs=169.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN---AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
.-|+....++.+.+...|+.+.|+..|++...-|+.+.. .-.-.+.+.|++++...+...+.... +-+...|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 345666666777777777777777777764433332211 12223345666666666665555421 22333444444
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CCHHHHHHHHHHHHhCCChHH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--E-RNVYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~ 173 (461)
...-..++++.|..+-++.++.. +.+...+-.-...+...|+.++|.-.|+... . -+...|.-|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 44455566677776666666654 3344455444566677788888887777654 3 367788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHHh-hcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 174 SLELFSLMKQAGVRPNEVTFVSVL-RGCC-VVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
|.-+-+...+. ++.+..+...+. ..|. ....-++|..+++..+ .+.|+ ....+.+...+...|..+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 87777665543 344455554442 2332 2344567777777654 45665 4556667777788888888888887
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 251 KM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 251 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
+. ...||....+.|...++..+.+++|...|..+..++|++.
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 76 5567888888888888888888888888888888888875
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=3.2e-07 Score=84.63 Aligned_cols=322 Identities=10% Similarity=0.102 Sum_probs=233.2
Q ss_pred ccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhC--CCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAMLAGYAQCGKSREALHLFHL 79 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 79 (461)
..|++..|+++|..-. +|+...|++.|+.=.+...++.|..++++. ..|++.+|---...=-++|....|..+|..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3588999999999864 699999999999999999999999999984 468888888888887888888888888887
Q ss_pred HHHCCCCcCHHHHHHHHHHH----hccCCHHHHHHHHHHHHHcC------------------------------------
Q 012539 80 MQIHDVKLNEVSMVSVLSAC----THLGALDQGRWAHVYIERNR------------------------------------ 119 (461)
Q Consensus 80 m~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~------------------------------------ 119 (461)
..+. --|...-..+..++ .+...++.|.-++...+..-
T Consensus 233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 7652 11222222222222 23333444444443332210
Q ss_pred -------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCH---HHHHHHHHHH--------HhCCChHHHHHHHH
Q 012539 120 -------LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNV---YTWTSVIGGL--------AMNGAGEKSLELFS 179 (461)
Q Consensus 120 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~~--------~~~g~~~~A~~~~~ 179 (461)
-+.|-.+|--.+..-...|+.+...++|++... |.. ..|.--|-.. ....+.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 133444555566666777889999999987762 211 2343333221 24678999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHH----hhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012539 180 LMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PM 254 (461)
Q Consensus 180 ~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 254 (461)
...+. ++-..+||..+=-.| .++.++..|.+++...+ |.-|...++...|+.=.+.++++.+..++++. ..
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99884 444577777654333 35789999999999886 88999999999999999999999999999988 55
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC--cchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccE
Q 012539 255 KP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN--HGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSV 331 (461)
Q Consensus 255 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 331 (461)
.| +..+|......-...|+.+.|..+|+.++.....+ ...|-..|.--...|.++.|..+++++.+..-.. .+|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~---kvW 543 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV---KVW 543 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc---hHH
Confidence 56 56699999888899999999999999998654322 2356667777778999999999999998764321 256
Q ss_pred EEe
Q 012539 332 IEV 334 (461)
Q Consensus 332 i~~ 334 (461)
|.+
T Consensus 544 isF 546 (677)
T KOG1915|consen 544 ISF 546 (677)
T ss_pred HhH
Confidence 543
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=6e-08 Score=89.68 Aligned_cols=288 Identities=15% Similarity=0.106 Sum_probs=203.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhccC
Q 012539 28 AMISACAKCGDVDLARKMFDEMPE--RD-PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV-SMVSVLSACTHLG 103 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~ 103 (461)
...+-|.+.|.+++|++.+....+ || ++.|.....+|...|+++++.+--.+.++ +.|+.+ .+.--.+++..+|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 344557789999999999998763 56 88899999999999999999998888877 567654 6777778889999
Q ss_pred CHHHHHHHHH------------------HHH------------H-cC--CCCchHHHHHHHHHHH---------hc----
Q 012539 104 ALDQGRWAHV------------------YIE------------R-NR--LKMTVTLGTALVDMYS---------KC---- 137 (461)
Q Consensus 104 ~~~~a~~~~~------------------~~~------------~-~~--~~~~~~~~~~li~~~~---------~~---- 137 (461)
+++++..-.. +.+ + .+ +-|+.....+....+- +.
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 9988752111 000 1 11 1122222222211110 00
Q ss_pred ------------C---CHHHHHHHHHhcC-----CC-----CH------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 012539 138 ------------G---NMNKAMDFFWGMK-----ER-----NV------YTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186 (461)
Q Consensus 138 ------------g---~~~~A~~~~~~~~-----~~-----~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 186 (461)
+ .+.+|...+.+-. .+ |. .+...-..-+.-.|+.-.|.+-|+.......
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 0 1222222211110 00 11 1111111224457888999999999988644
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 012539 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGA 263 (461)
Q Consensus 187 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 263 (461)
.++. .|--+..+|....+.++.+..|+... .+.| ++.+|..-..++.-.+++++|..-|++. .+.|. ...|-.
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 4433 26667778899999999999999886 4555 5788888888899999999999999988 55664 446666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+..+..+.+.+++++..|+..++..|..+..|+....++...+++++|.+.|+..++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 7667677789999999999999999999999999999999999999999999988764
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.6e-07 Score=88.58 Aligned_cols=273 Identities=12% Similarity=0.034 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
|+.....-.+-+-..+++.+..++++...+.| ...+-.-|.++...|+..+-..+=.+|.+.- +-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 44444555566778899999999999887654 4466677788999999998888888888853 4467899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 175 (461)
|...|...+|++.+.+..... +.-...|-.+...|+-.|.-|.|...+....+ + .-..+--+.--|.+.+..+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 988999999999999887754 33456788899999999999999888765442 1 1111222344577889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc-CCc----cChhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY-GIE----PWLEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+..+..- .+. -...+++.|..+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999998774 23356667766666667899999999998876311 111 134568889999999999999999999
Q ss_pred hC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 251 KM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 251 ~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
+. ... .+..++.++.-.+...|+++.|...|.+.+.+.|++..+-..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 88 333 467788888888999999999999999999999998644333
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=2e-07 Score=91.05 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 305 (461)
++..+...|-..|++++|++++++. ...|+.+ .|..-...+...|++.+|....+.+.++++.|...-+-.+.-+.++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 3344556666677777777777655 3345433 5555555566777777777777777777766655555555666677
Q ss_pred CChhHHHHHHHHHHhCCC
Q 012539 306 KNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 306 g~~~~a~~~~~~m~~~g~ 323 (461)
|++++|.++.....+.+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCHHHHHHHHHhhcCCCC
Confidence 777777777666655544
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.2e-06 Score=79.73 Aligned_cols=261 Identities=11% Similarity=-0.013 Sum_probs=193.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 012539 52 RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (461)
.|+.....+...+...|+.++|+..|++.+. +.|+..+ ...-.-.+.+.|+.+....+...+.... +.+..-|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 4788899999999999999999999999877 3454432 2222233456778877777777666543 1222223223
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 206 (461)
+......++++.|+.+-++..+ +++..+-.-...+.+.|++++|.-.|+..+. +.| +...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 3444557788899888887664 4566666666788999999999999999887 444 678999999999999999
Q ss_pred HHHHHHHHHhhhhcCCccChhHHHHHH-HHHHh-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 012539 207 EEGREHFDSMRREYGIEPWLEHYGCLV-DLYGR-AGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
.+|.-+-+...+. ++.+..+...+. ..+.- ...-++|.+++++. ..+|+-. ..+.+...|..-|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998887776643 333455554442 23322 23357889998887 6677755 66777777999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+.....|++ ...+.|...+...+.+.+|.+.|.....
T Consensus 463 ~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999988876 4889999999999999999999987654
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=9.4e-07 Score=86.40 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=187.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh----c
Q 012539 29 MISACAKCGDVDLARKMFDEMPER--DP-IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT----H 101 (461)
Q Consensus 29 li~~~~~~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----~ 101 (461)
....+...|++++|++.++.-... |. .........+.+.|+.++|..+|+.+++.+ |+...|...+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 345667889999999999875543 43 345567788889999999999999999864 66666655555444 1
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH-HHHHHHHhcCCCCH-HHHHHHHHHHHhCCChHHHHHH
Q 012539 102 --LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN-KAMDFFWGMKERNV-YTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 102 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 177 (461)
..+.+....+++.+...-...+ ....+.-.+..-..+. .+...+..+..+.+ .+++.+-..|....+.+-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~--~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSD--APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhCcccc--chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 2246777788887766542212 2211211122111222 23444444555555 4566666666655555555566
Q ss_pred HHHHHHc----C----------CCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcC
Q 012539 178 FSLMKQA----G----------VRPNE--VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAG 240 (461)
Q Consensus 178 ~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 240 (461)
+...... + -+|.. .++.-+...|...|+.++|+.+.+..+. ..|+ +..|..-...|-+.|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCC
Confidence 6655432 1 12333 2445556677789999999999998875 3665 788999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc--CCC-------cchHHHHHHHHhhcCChh
Q 012539 241 RLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELE--TKN-------HGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~ 309 (461)
++++|.+.++.. ...+ |...-+-....+.+.|++++|...+....+.+ |.. .......+.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999887 3333 44455555666889999999999998887654 221 112245788899999999
Q ss_pred HHHHHHHHHHh
Q 012539 310 RVINVRQIMKA 320 (461)
Q Consensus 310 ~a~~~~~~m~~ 320 (461)
.|.+-|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99887766654
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.99 E-value=4.4e-08 Score=96.62 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 232 (461)
++..+|.+++.+-...|+.+.|..++.+|++.|++.+..-|..|+-+ .++...+..++..|.+. |+.|+.+|+.-.
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 68889999999999999999999999999999999998888877755 78888888888888664 999999999887
Q ss_pred HHHHHhcCC
Q 012539 233 VDLYGRAGR 241 (461)
Q Consensus 233 i~~~~~~g~ 241 (461)
+..+.+.|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 776666544
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.7e-08 Score=93.89 Aligned_cols=219 Identities=14% Similarity=0.064 Sum_probs=176.5
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+.+.|++.+|.-.|+..++.. |.+...|-.|.-.....++-..|+..+.+..+ .|..+.-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788999999999888876 66788999999999999998899999988775 36678888888899999999999
Q ss_pred HHHHHHHHcCCC-----C---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 012539 176 ELFSLMKQAGVR-----P---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247 (461)
Q Consensus 176 ~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (461)
..++.-.....+ + +..+-.. ........+....++|-.+....+..+|+.++..|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988664211 0 0000000 12223334556667777776665666888899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 248 VINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 248 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.|+.+ ..+| |..+||-|...++...+.++|+..|.+++++.|.-..+...|...|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99988 6677 4559999999999999999999999999999999999999999999999999999998877654
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=4.7e-07 Score=76.16 Aligned_cols=184 Identities=14% Similarity=0.018 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
+...|.-+|.+.|++..|..-+++.++.+ +-+..++..+...|.+.|..+.|.+.|++.++.. +.+..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45556667777777777777777776643 2244466666666677777777777777766654 344555566666666
Q ss_pred hcCCHHHHHHHHHhcC-CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHH
Q 012539 136 KCGNMNKAMDFFWGMK-ERN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 209 (461)
..|++++|...|++.. .|+ ..+|..+.-+..+.|+.+.|.+.|++..+. .|+ ..+...+.......|+...|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 6666666666666544 232 245555555555666666666666655553 222 33444444555555555555
Q ss_pred HHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHH
Q 012539 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
..+++..... ..++....-..|..-.+.|+.+.+
T Consensus 193 r~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 193 RLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHH
Confidence 5555554332 224444433334443444444433
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=4e-07 Score=76.56 Aligned_cols=197 Identities=12% Similarity=0.019 Sum_probs=128.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhC
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMN 168 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 168 (461)
...+.-.|...|+...|+.-+++.++.. |.+..++..+...|.+.|+.+.|.+.|+... ..+-...|.-..-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 4445556677777777777777777764 4455666777777777777777777777654 23456666666677777
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHH
Q 012539 169 GAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 169 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 246 (461)
|++++|...|++......-| -..||..+.-+..+.|+.+.|...|++.++ ..|+ +.....+.....+.|++-.|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776542222 245666666666677777777777776654 2333 456666777777777777777
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 247 DVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 247 ~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+++.. ...++..+.-..|..-...||...+.+.-..+....|.+.
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 777666 2235555555555666677777777777777777666654
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=3e-06 Score=80.70 Aligned_cols=297 Identities=10% Similarity=-0.074 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPE---RDP---IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
...|..+...+...|+.+.+...+....+ ++. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566677777778888876666655331 222 223334456678899999999999988753 223334432 2
Q ss_pred HHHh----ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCC
Q 012539 97 SACT----HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNG 169 (461)
Q Consensus 97 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 169 (461)
..+. ..+..+.+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...|...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 2222 23445555555544 1112223344555667788999999999999998764 35678888899999999
Q ss_pred ChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHH-H--HHHHHHHhcCCHH
Q 012539 170 AGEKSLELFSLMKQAGV-RPNE--VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY-G--CLVDLYGRAGRLD 243 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~ 243 (461)
++++|...+++...... .|+. ..|..+...+...|+.++|..+++.........+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999999877432 2332 235567778889999999999999875321111222111 1 2333344445333
Q ss_pred HHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC---------CcchHHHHHHHHhhcCC
Q 012539 244 EALDV---INKM-PMKPH---AGAWGALLNACRMYKNTEMGELASRKLVELETK---------NHGAYVLLSNIYAESKN 307 (461)
Q Consensus 244 ~A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~ 307 (461)
.+.++ .... +..|. .........++...|+.+.|...++.+...... ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33332 1111 11111 122234555578889999999999888753211 23344566667789999
Q ss_pred hhHHHHHHHHHHhCC
Q 012539 308 WDRVINVRQIMKAKG 322 (461)
Q Consensus 308 ~~~a~~~~~~m~~~g 322 (461)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876643
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=4.7e-08 Score=88.92 Aligned_cols=204 Identities=7% Similarity=-0.020 Sum_probs=89.7
Q ss_pred cCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPER----DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
.|++..++.-.+ .... +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 566666664443 1111 23344455666666666654432 232222 45555554444444332333333333
Q ss_pred HHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 012539 112 HVYIERNRLK-MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190 (461)
Q Consensus 112 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 190 (461)
+......... .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD- 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED- 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-
Confidence 3322222212 22233333334455566666666666554 34555555566666666666666666666542 233
Q ss_pred HHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 191 VTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 191 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
.+...+..++.. ...+.+|.-+|+++.. ...+++.+.+.+..+....|++++|.+++++
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222223333221 1234555555555432 2233444444444444444444444444444
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=1.7e-07 Score=96.69 Aligned_cols=209 Identities=12% Similarity=0.092 Sum_probs=176.3
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER--------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
|++.+... |.+...|-..|......++.++|++++++.... -.-.|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444443 555667888899999999999999999988742 345799999888888988999999999987
Q ss_pred cCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH
Q 012539 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHAG 259 (461)
Q Consensus 184 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~ 259 (461)
. --....|..|...|.+.+..++|-++++.|.++++ .....|...++.+.+.++-+.|..++++. |.+....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 4 33356688999999999999999999999999777 56778999999999999999999999877 3333455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
........-.++|+.+.+..+|+......|.....|+.++..-.+.|+.+.++.+|++....++.+
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 667777778899999999999999999999999999999999999999999999999999988754
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=3.5e-06 Score=74.91 Aligned_cols=294 Identities=14% Similarity=0.130 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML---AGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSA 98 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~ 98 (461)
+.----|.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=+.+.++ ++||-.. -..-...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence 333444666777889999999999988888888777765 578889999999998888887 5777653 2233455
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCc--hHHH------------HHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMT--VTLG------------TALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSV 161 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 161 (461)
+.+.|.++.|..-|+.+++...... ..++ ...+..+...|+...|+.....+.+ -|...|..-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 6788999999999999987653111 1111 1234455667899999888887764 477888888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh----HHHHH---H-
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE----HYGCL---V- 233 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i- 233 (461)
..+|...|.+..|+.-++...+.. .-+..++..+-..+...|+.+.++...++.+ .+.|+-. .|-.| +
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHH
Confidence 899999999999998888876643 2244555566667778888888888777665 4566532 12211 1
Q ss_pred -----HHHHhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 234 -----DLYGRAGRLDEALDVINKM-PMKPHA-----GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 234 -----~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
....+.+++.++++-.+.. ...|.. ..+..+-.++...+++.+|++...++++.+|+|..++---..+|
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1223456666666666554 334442 24555666788889999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhCC
Q 012539 303 AESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~g 322 (461)
.-...+++|+.-|+...+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 99999999999998876643
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=8.6e-08 Score=87.22 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=136.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 63 GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.+.. +|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444577777775554 222222223445555667777777765433 3333333 4555554444443333345555
Q ss_pred HHHHHHhcC-CC---CHHHHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 143 AMDFFWGMK-ER---NVYTWTS-VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 143 A~~~~~~~~-~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
+..-+++.. ++ +-.++.. ....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554433 22 1112222 223455567777777777642 244555566677777788888888887775
Q ss_pred hhcCCccChhHHHHHHHHH----HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 218 REYGIEPWLEHYGCLVDLY----GRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
+ +..| .+...+..++ .-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.++++..+.+|.+
T Consensus 159 ~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 Q---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred h---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 2 3333 2333333333 2234577788888777 223566677777777777888888888888777777777
Q ss_pred cchHHHHHHHHhhcCCh-hHHHHHHHHHHhC
Q 012539 292 HGAYVLLSNIYAESKNW-DRVINVRQIMKAK 321 (461)
Q Consensus 292 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 321 (461)
+.+...++.+....|+. +.+.+++.+++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777777777 5566677776653
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.87 E-value=4.5e-06 Score=80.10 Aligned_cols=309 Identities=14% Similarity=0.145 Sum_probs=155.7
Q ss_pred ccCCchHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE-----PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
+.|++..-++.|+..+. ....+|...+....+.|-++.+.+++++-.+-++..-+.-|..++..+++++|-+.+.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34455555555554331 1233455555555555555566666655555555555555555555666665555555
Q ss_pred HHHHCC------CCcCHHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 79 LMQIHD------VKLNEVSMVSVLSACTHLGALDQ---GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149 (461)
Q Consensus 79 ~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 149 (461)
..+... .+.+...|..+-...++..+.-. ...+++.++..-...-...|++|.+-|.+.|.+++|..+|++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 443211 12233333333333332222111 112222222221111234566677777777777777666655
Q ss_pred cCCC----------------------------------------------------------------------CHHHHH
Q 012539 150 MKER----------------------------------------------------------------------NVYTWT 159 (461)
Q Consensus 150 ~~~~----------------------------------------------------------------------~~~~~~ 159 (461)
..+. ++..|.
T Consensus 274 ai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~ 353 (835)
T KOG2047|consen 274 AIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWH 353 (835)
T ss_pred HHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHH
Confidence 4321 111111
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--C-hhHHH
Q 012539 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPN------EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--W-LEHYG 230 (461)
Q Consensus 160 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~-~~~~~ 230 (461)
.-+. ...|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|+.+|++..+- ..+- + ..+|.
T Consensus 354 kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 354 KRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWC 429 (835)
T ss_pred hhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHH
Confidence 1111 1134555566666666543 3332 234666677777777777777777766532 1111 1 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC---CCC-----------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 231 CLVDLYGRAGRLDEALDVINKM---PMK-----------------PHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~---~~~-----------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
.-.++=.+..+++.|+++.+.. |.. .+...|..++...-..|-++....++++++++.--
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 5556666667777777777666 211 12234555555555666677777777777766544
Q ss_pred CcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 291 NHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
.|..-...+..+....-++++.++++
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444444555555666666664
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.5e-06 Score=75.73 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=199.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHH-HHHHHhc
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS-VLSACTH 101 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~ 101 (461)
+++.+.-+.+..++++|++++..-.++ +....+.|..+|-...++..|-+.++++-.. .|...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455566667788999999998876554 4556788888999999999999999998774 455544432 2344556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTA--LVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.+.+..|.++...|... ++...-.. -.......+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 67788888887776543 11111111 1112234688888899998888 456666666666677899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-------------Ch--------hHHHHHHHH--
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-------------WL--------EHYGCLVDL-- 235 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~--------~~~~~li~~-- 235 (461)
+...+-+--.....|+..+ +..+.++.+.|+++..+++++ |+.. |+ -+-+.++.+
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 9887643333456676544 555678899999988888764 5431 11 123334443
Q ss_pred -----HHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC
Q 012539 236 -----YGRAGRLDEALDVINKMPM----KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306 (461)
Q Consensus 236 -----~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 306 (461)
+.+.|+++.|.+.+..||- ..|++|...+.-. -..+++....+-+.-+.+++|-.+.||..++-.|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 4577999999999999942 3577776655332 34566777777788888899988889999999999999
Q ss_pred ChhHHHHHHHH
Q 012539 307 NWDRVINVRQI 317 (461)
Q Consensus 307 ~~~~a~~~~~~ 317 (461)
-++-|..++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 99999988865
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=3.7e-06 Score=82.37 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=100.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMY 271 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~ 271 (461)
.....+...+..++|...+.+.. ++.| ....|......+...|..++|.+.|... .+.|+.+ +..++...+...
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 34455666677777776666654 3334 4566777777888889999999988776 6677655 888888899999
Q ss_pred CChHHHHH--HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 272 KNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 272 ~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|+...|.. ++..+.+.+|.++..|..|..++.+.|+.++|.+.|+...+..
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99888888 9999999999999999999999999999999999999877643
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=9.3e-06 Score=72.30 Aligned_cols=286 Identities=16% Similarity=0.093 Sum_probs=210.5
Q ss_pred cccCCchHHHHHHhcCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHhhCCCCChhHHHH---HHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVCQTAMI---SACAKCGDVDLARKMFDEMPERDPIAWNA---MLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~ 76 (461)
...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.=|++..+..+..+.+ -...+.+.|.+++|..=
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH
Confidence 3578889999999998888888887765 46778888888887777766433333333 33567889999999999
Q ss_pred HHHHHHCCCCcCH--H------------HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 77 FHLMQIHDVKLNE--V------------SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 77 ~~~m~~~~~~p~~--~------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
|+..++.....+. . .....+..+...|+...++.....+++.. +-+...+..-..+|...|+...
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHH
Confidence 9999876431111 1 12233445567789999999999998874 6688888888999999999999
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-H---HHH---------HHHHhhcCcH
Q 012539 143 AMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT-F---VSV---------LRGCCVVGLV 206 (461)
Q Consensus 143 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~---~~l---------l~~~~~~g~~ 206 (461)
|+.=++... ..+..+..-+-..+...|+.+.++...++-.+ +.||... | -.| +......+.+
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 987666544 56777888888889999999999999999887 5777432 1 111 1122345667
Q ss_pred HHHHHHHHHhhhhcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 012539 207 EEGREHFDSMRREYGIEPW-----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 279 (461)
.++..-.+...+. .|. ...+..+-.+|...|++.+|++...+. .+.|| +.++.--..+|.....++.|+.
T Consensus 286 t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 286 TECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6777766666542 343 233445666778889999999988776 56676 6688888888999999999999
Q ss_pred HHHHHhhccCCCcch
Q 012539 280 ASRKLVELETKNHGA 294 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~ 294 (461)
-|+++.+.++++..+
T Consensus 363 dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 363 DYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCcccHHH
Confidence 999999999988644
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.3e-05 Score=71.74 Aligned_cols=313 Identities=10% Similarity=0.057 Sum_probs=150.3
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------------Chh---H----
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPER---------------DPI---A---- 56 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~---~---- 56 (461)
|.+.|++++|..++..+. .++...|-.|.-.+.-.|.+.+|..+-.+.++. |.. +
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 456788999999887654 366677777777777778888888877776542 111 1
Q ss_pred -------HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCc-----
Q 012539 57 -------WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNRLKMT----- 123 (461)
Q Consensus 57 -------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~----- 123 (461)
--+|.+..-..-.+.+|++++.+....+ |+....|.-+.. |.+..-++-+.+++.--++.- +.+
T Consensus 147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~N 223 (557)
T KOG3785|consen 147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKN 223 (557)
T ss_pred HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHH
Confidence 1123333333445778888887776542 333333333222 233333333333322222110 111
Q ss_pred -------------------------------------------------------------hHHHHHHHHHHHhcCCHHH
Q 012539 124 -------------------------------------------------------------VTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 124 -------------------------------------------------------------~~~~~~li~~~~~~g~~~~ 142 (461)
+..-..|+--|.+.+++++
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqe 303 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQE 303 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHH
Confidence 1111234445677788888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCcHHHHHHHHH
Q 012539 143 AMDFFWGMKERNVYTWTSVIGGLAMNGA-------GEKSLELFSLMKQAGVRPNEV-TFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 143 A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
|..+.+++...++.-|-.-.-.++..|+ ..-|.+.|+-.-.++..-|.. --.++.+++.-..++++.+.+++
T Consensus 304 A~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln 383 (557)
T KOG3785|consen 304 AISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN 383 (557)
T ss_pred HHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777765444333322222333332 233444444433333222211 11223333333445555555555
Q ss_pred HhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcc-CC
Q 012539 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP-MK-PHAGAWGALLNA-CRMYKNTEMGELASRKLVELE-TK 290 (461)
Q Consensus 215 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~ 290 (461)
.+.. +-...|...+ .+..+++..|++.+|+++|-.+. .+ .|..+|.+++.- |.+.+.++.|-.+ +++.+ |.
T Consensus 384 Si~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~ 458 (557)
T KOG3785|consen 384 SIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPS 458 (557)
T ss_pred HHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCch
Confidence 5532 2222233333 34555666666666666655551 11 344455444443 4445555544333 22222 21
Q ss_pred Cc-chHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 291 NH-GAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 291 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+. .....+.+-|.+++.+--|.+.|+.+....
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 11 122334455555555555555555554433
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=3.1e-05 Score=73.73 Aligned_cols=267 Identities=12% Similarity=0.022 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHH--
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA-- 129 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 129 (461)
+..|..+...+...|+++++...+.+..+... .++... .......+...|+++++...++++.+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 55677788888888999888777777655321 223322 2222344567899999999999998874 444444442
Q ss_pred -HHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 130 -LVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 130 -li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
+.......|..+.+.+.+..... | .......+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222335666667776665332 2 23455566678899999999999999998853 3345677788889999999
Q ss_pred HHHHHHHHHHhhhhcCCccCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH----H--HHHHHHHhcCChHH
Q 012539 206 VEEGREHFDSMRREYGIEPWL--EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAW----G--ALLNACRMYKNTEM 276 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~----~--~ll~~~~~~~~~~~ 276 (461)
+++|..+++.........|+. ..|..+...+...|++++|..++++. ...|....+ + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887532212332 34557888999999999999999986 222311211 1 22333445554444
Q ss_pred HHHH---HHHHhhccCCCcchH--HHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 277 GELA---SRKLVELETKNHGAY--VLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 277 a~~~---~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+.+. ........|.....+ .....++...|+.++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4443 222111112211222 357777889999999999999987643
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.75 E-value=7.7e-05 Score=71.93 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---------
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMKER---NV----YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP--------- 188 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------- 188 (461)
..|..+.+.|-..|+++.|+.+|++..+- .+ .+|..-...=.++.+++.|+++++......-.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 35667888999999999999999988753 22 456666677778889999999888775421111
Q ss_pred --------CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC-CC
Q 012539 189 --------NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-P-MK-PH 257 (461)
Q Consensus 189 --------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~-p~ 257 (461)
+...|...++.--..|-++....+++.++.-.-..| .......-.+-...-++++.+++++- + ++ |+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 112244444444556788888888888875322223 33333334455677789999999886 2 23 55
Q ss_pred HH-HHHHHHHHHHh---cCChHHHHHHHHHHhhccCCCcc--hHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 258 AG-AWGALLNACRM---YKNTEMGELASRKLVELETKNHG--AYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 258 ~~-~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+. .|+..+.-+.+ ....+.|..+|+++++..|+... .|...+..-.+-|....|++++++..
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54 89888877533 23689999999999998886432 33344444456788888999998853
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.71 E-value=6.8e-05 Score=72.38 Aligned_cols=313 Identities=11% Similarity=0.061 Sum_probs=181.2
Q ss_pred ccCCchHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHEP---DVVCQTAMISACAKCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
..|+-++|......+... +.+.|..+.-.+-...++++|++.|.... ..|...|.-|.-.-++.|+++.....-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 357777888887777653 45668877777777888888888888644 335666666666666677777776666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCchHHHHHH------HHHHHhcCCHHHHHHHHHhc
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTAL------VDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~ 150 (461)
.++.+.. +-....|.....+..-.|+...|..+.+...+... .|+...+.-. .....+.|..++|++.+...
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6666532 22344566666677777778888887777776542 3444444322 22334567777777766655
Q ss_pred CCC--CH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-h-cCcHHHHHHHHHHhhhhc-----
Q 012539 151 KER--NV-YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC-V-VGLVEEGREHFDSMRREY----- 220 (461)
Q Consensus 151 ~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~-~g~~~~a~~~~~~~~~~~----- 220 (461)
... |- ..-......+.+.++.++|..++..+... .||...|...+..+. . .+..+....+|....+.+
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 432 22 22334455667778888888888887763 566555544433322 2 222222223333332211
Q ss_pred ----------------------------CCccChhHHHHHHHHHHhcCCHHH----HHHHHHhC-C------------CC
Q 012539 221 ----------------------------GIEPWLEHYGCLVDLYGRAGRLDE----ALDVINKM-P------------MK 255 (461)
Q Consensus 221 ----------------------------~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~ 255 (461)
|+++ ++..+...|-.-...+- +..+...+ + ..
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 2111 22222222222111111 11111111 1 13
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 256 PHAGAWGALLN--ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 256 p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|....|....- .+-..|+++.|....+.+++..|.-+..|..=++++...|.+++|...+++..+..
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 55555554433 37777888888888888877777776777777788888888888888887776544
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.2e-06 Score=83.04 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=104.3
Q ss_pred cccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
.+.|++.+|.-.|+.... | +...|-.|....+..++=..|+..+.+..+- |....-.|.-.|...|.-.+|+..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 345566666666655443 2 3445666666666666555565555554432 344555555556666666666666
Q ss_pred HHHHHHCCCC--------cCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 012539 77 FHLMQIHDVK--------LNEVSMVSVLSACTHLGALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147 (461)
Q Consensus 77 ~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 147 (461)
++.-+...++ ++..+-.. ........+....++|-.+.. .+..+|+.+...|.-.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 6555432210 00000000 011111222333333333332 222245555555666666666666666666
Q ss_pred HhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 148 WGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 148 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
+.... .|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|-.+
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 65542 2455666666666666666666666666655 45552 12223344555666666665555443
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=3.6e-05 Score=82.96 Aligned_cols=318 Identities=10% Similarity=0.010 Sum_probs=200.0
Q ss_pred cCCchHHHHHHhcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHhhCC----CC----C----hhHHHHHHHHHHHcC
Q 012539 5 LGCLGYCQKVFDGIHE----PDVVCQTAMISACAKCGDVDLARKMFDEMP----ER----D----PIAWNAMLAGYAQCG 68 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~----~----~~~~~~li~~~~~~g 68 (461)
.|+++.+...++.++. .++.........+...|++++|..+++... .. + ......+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4556666666665531 223333344455567888998888877542 11 1 112223345567889
Q ss_pred ChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--chHHHHHHHHHHHhcCC
Q 012539 69 KSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERNRL---KM--TVTLGTALVDMYSKCGN 139 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~ 139 (461)
++++|...+++....-...+. .+.+.+...+...|++++|...+.+...... .+ .......+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 999999999887763111222 2345555667788999999988888764311 11 12344566778888999
Q ss_pred HHHHHHHHHhcCC-------C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhhcC
Q 012539 140 MNKAMDFFWGMKE-------R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPN--EVTFVSVLRGCCVVG 204 (461)
Q Consensus 140 ~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g 204 (461)
+++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+.......|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999888876542 1 1223445556677789999999999887552 11222 333444556677889
Q ss_pred cHHHHHHHHHHhhhhcCCccChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHH----HHHHHHHHHHhcCC
Q 012539 205 LVEEGREHFDSMRREYGIEPWLEHY-----GCLVDLYGRAGRLDEALDVINKMPMK--PHAG----AWGALLNACRMYKN 273 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~ll~~~~~~~~ 273 (461)
+.++|...+.....-.........+ ...+..+...|+.+.|..++...... .... .+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 9999999888775321111111111 11224455688999999988776211 1111 13445556888999
Q ss_pred hHHHHHHHHHHhhccC------CCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 274 TEMGELASRKLVELET------KNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.++|...++++..... ....++..+..++.+.|+.++|...+.+..+..
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999876421 123467788889999999999999999887654
No 92
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.6e-08 Score=57.62 Aligned_cols=33 Identities=45% Similarity=0.618 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 012539 18 IHEPDVVCQTAMISACAKCGDVDLARKMFDEMP 50 (461)
Q Consensus 18 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 50 (461)
+..||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567888888888888888888888888888874
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=5.3e-05 Score=72.33 Aligned_cols=114 Identities=13% Similarity=-0.026 Sum_probs=78.0
Q ss_pred ccccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHH--HHHHHHHHHcCChHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW--NAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~li~~~~~~g~~~~A~~~ 76 (461)
+...|++++|.+..++++. .|......=+-+..+.+++++|+.+.+.-...+.... -.=..+..+.+..++|+..
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 4678889999998887653 3455666667778889999999977765443221111 1223344577888999888
Q ss_pred HHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 012539 77 FHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120 (461)
Q Consensus 77 ~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 120 (461)
++ |..+ |..+...-...|-+.++++++..+|+.+.+.+.
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 87 3333 333666666778888999999999998877653
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=3.3e-06 Score=75.27 Aligned_cols=182 Identities=10% Similarity=-0.031 Sum_probs=125.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN-V---YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE--VTF 193 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 193 (461)
.....+..++..+.+.|++++|...|+++.. |+ . .+|..+..++.+.|++++|+..|+++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455667788888999999999999987763 32 2 46778888899999999999999999874321111 244
Q ss_pred HHHHHHHhhc--------CcHHHHHHHHHHhhhhcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 012539 194 VSVLRGCCVV--------GLVEEGREHFDSMRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264 (461)
Q Consensus 194 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 264 (461)
..+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... . .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH---H--------HHHHHH
Confidence 4455555544 6788888888888754 3432 2222221110 011000 0 011234
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCC---cchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKN---HGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...+...|+++.|...++.+.+..|++ +.++..++.++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455888999999999999999887764 468889999999999999999999988654
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.65 E-value=7.6e-06 Score=79.64 Aligned_cols=193 Identities=13% Similarity=0.166 Sum_probs=116.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
.+......+.+|..+++.+..... ....|..+.+-|+..|+++-|.++|.+.. .++-.|..|.+.|+++.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 344455666777777766655432 23355667777777788888877776543 34556777778888887777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 177 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
+-.+... .......|.+-..-.-..|.+.+|.+++-.+. .|+ .-|.+|-+.|..++.+++.++..-..
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 7665431 22233444444444556677777777764431 233 24667777777777777777652111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
-..|-..+..-+-..|+...|+.-|-++ .-|.+-+++|-.++.|++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 1224444555566677777776655443 245556677777777777766654
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=6.8e-08 Score=56.44 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 119 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
|++||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=1.6e-05 Score=82.76 Aligned_cols=238 Identities=10% Similarity=0.104 Sum_probs=169.0
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCC---CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 012539 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLK---MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152 (461)
Q Consensus 77 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 152 (461)
|+++.... +.....|-.-+......++.+.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 234456777788888888999999998888763 111 1245777788887777888888899988875
Q ss_pred --CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhH
Q 012539 153 --RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--WLEH 228 (461)
Q Consensus 153 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 228 (461)
.....|..|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++. ++- .+..
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEF 1602 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHH
Confidence 23467888889999999999999999999765 3455677888888888888889999999888753 222 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc--CCCcc-hHHHHHHHHh
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELE--TKNHG-AYVLLSNIYA 303 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~ 303 (461)
....+.+-.+.|+.+.+..+|+.. ...| -...|+.++..-.++|+.+.+..+|+++..+. |.... .|.-.+.--.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 666677778899999999998887 2233 34589999999999999999999999998765 43433 3333333333
Q ss_pred hcCChhHHHHHHHHH
Q 012539 304 ESKNWDRVINVRQIM 318 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m 318 (461)
..|+-+.+..+-.+.
T Consensus 1683 ~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1683 SHGDEKNVEYVKARA 1697 (1710)
T ss_pred hcCchhhHHHHHHHH
Confidence 445555544444433
No 98
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=4.4e-05 Score=70.55 Aligned_cols=231 Identities=16% Similarity=0.070 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE-VSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+++.+-..+...++.++|+.+..++++. .|+. .+|+..-.++...+ .++++...+..+++.+ +.+..+|+.-..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4555556666677777777777777763 3433 34555545555555 4677777777776654 3444455544444
Q ss_pred HHhcCCH--HHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 134 YSKCGNM--NKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 134 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
+.+.|+. +++..+++.+.+ +|..+|+.....+...|+++++++.++++.+.+.. |...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-
Confidence 4445542 455555555542 35566666666666666666666666666664322 3334443333222221000
Q ss_pred HHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHHH
Q 012539 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMY----KNTEMGELASR 282 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~~ 282 (461)
+ .....+++.....++ ...| |...|+-+...+... ++..+|...+.
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 000112333333222 3334 334666666665552 33456777777
Q ss_pred HHhhccCCCcchHHHHHHHHhhcC------------------ChhHHHHHHHHHH
Q 012539 283 KLVELETKNHGAYVLLSNIYAESK------------------NWDRVINVRQIMK 319 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 319 (461)
.+.+.+|.++.+...|+..|.... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 777777887778888888887532 2366777777773
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.58 E-value=0.00015 Score=71.56 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC-HHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN-EVSMVSVL 96 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll 96 (461)
.|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|+.+.+.-......|+ ...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5777888888888888999988888887553 2456788888888888888888888876655332343 33333333
Q ss_pred HHH-hccCCHHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhc-----------CCHHHHHHHHHhcCCC---CHHH
Q 012539 97 SAC-THLGALDQGRWAHVYIERN--RL--KMTVTLGTALVDMYSKC-----------GNMNKAMDFFWGMKER---NVYT 157 (461)
Q Consensus 97 ~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~---~~~~ 157 (461)
..| .+.+..+++..+-.++++. +. ...+..+..+.-+|... ....++.+.+++..+. |+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 334 3455666666655555541 10 11122233333333221 1122334444443221 1111
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
---+.--|+..++.+.|++..++..+.+-.-+...|..|.-.++..+++.+|+.+.+....+
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 11122224444555555555555555433444444444444444455555555544444433
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=9.5e-06 Score=72.34 Aligned_cols=182 Identities=13% Similarity=0.064 Sum_probs=127.4
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CH---HHH
Q 012539 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NV---YTW 158 (461)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~ 158 (461)
.....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...|+.+.+ | +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 356678888888999999999999999998865221 124667789999999999999999999864 2 22 256
Q ss_pred HHHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHH
Q 012539 159 TSVIGGLAMN--------GAGEKSLELFSLMKQAGVRPNEV-TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229 (461)
Q Consensus 159 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 229 (461)
..+..++.+. |++++|.+.|+++... .|+.. ....+... +... ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHH------HHH-H--------HHH
Confidence 6666667665 7889999999999875 45432 22222111 0000 000 0 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM----PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
..+...|.+.|++++|...+++. +..| ....+..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24666788899999999888877 2223 245788888889999999999998888776555
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=8.1e-06 Score=70.19 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=87.4
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA-CRMYKN--TEMG 277 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~--~~~a 277 (461)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666554 22345777888888888888888888888777 4445 44466666665 356666 4888
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
..+++++.+.+|++..++..+...+.+.|++++|...++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888876543
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00032 Score=75.75 Aligned_cols=319 Identities=11% Similarity=0.009 Sum_probs=200.0
Q ss_pred cccCCchHHHHHHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVC--QTAMISACAKCGDVDLARKMFDEMPE----RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
...|++.+|..........+... ...........|+++.+...++.++. .++.........+...|++++|...
T Consensus 352 ~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~ 431 (903)
T PRK04841 352 LAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTL 431 (903)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHH
Confidence 34566666666555554332211 11222345567888888888887752 2333334455566788999999999
Q ss_pred HHHHHHCC--C----CcCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHH
Q 012539 77 FHLMQIHD--V----KLNEV--SMVSVLSACTHLGALDQGRWAHVYIERNRLKMT----VTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 77 ~~~m~~~~--~----~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 144 (461)
+.+....- . .|... ....+...+...|+++.+...++.........+ ....+.+...+...|++++|.
T Consensus 432 l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 432 LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98775421 0 11111 222233445678999999999998876421222 134456677788899999999
Q ss_pred HHHHhcCC-------CC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhhcCcHHH
Q 012539 145 DFFWGMKE-------RN--VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVR--P-NEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 145 ~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~ 208 (461)
..+++... +. ..++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99887652 11 234556677788999999999999887542 211 1 12334445556677899999
Q ss_pred HHHHHHHhhhhcC-Ccc--ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHH-----HHHHHHhcCChHH
Q 012539 209 GREHFDSMRREYG-IEP--WLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHAGAWGA-----LLNACRMYKNTEM 276 (461)
Q Consensus 209 a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~-----ll~~~~~~~~~~~ 276 (461)
|...+........ ..+ ....+..+...+...|+.++|...+++. ........+.. .+..+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 9999887754211 112 2334555667788899999999888776 11111111111 1233556789999
Q ss_pred HHHHHHHHhhccCCCcc----hHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 277 GELASRKLVELETKNHG----AYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|...+.......+.... .+..+..++...|++++|...+++....
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98887776543222211 1456788899999999999999887653
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.5e-05 Score=72.75 Aligned_cols=317 Identities=14% Similarity=0.035 Sum_probs=180.5
Q ss_pred cccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RD-PIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
...|+++.|...|-... ++|.+.|+.=..+|++.|++++|++==.+..+ |+ +..|+-+..++.-.|++++|+..
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 45799999999997753 46788899999999999999999876555443 43 45899999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhccCC------------------------------------------------HHHH
Q 012539 77 FHLMQIHDVKLNEVSMVSVLSACTHLGA------------------------------------------------LDQG 108 (461)
Q Consensus 77 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~------------------------------------------------~~~a 108 (461)
|.+-++.. +.|...+..+..++..... .+..
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99887743 2344555555555411100 0000
Q ss_pred HHHHHHHHHc--------C-------CCC------------ch----------HHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 109 RWAHVYIERN--------R-------LKM------------TV----------TLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 109 ~~~~~~~~~~--------~-------~~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
.+.+..+... + ..| +. .-...+.++..+..+++.|++-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0000000000 0 000 00 001123344444444444444444333
Q ss_pred C--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCc
Q 012539 152 E--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP--N----EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223 (461)
Q Consensus 152 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (461)
. .++.-++....+|...|.+.+.........+.|-.. + ...+..+..++.+.++.+.+...|.+....+. .
T Consensus 252 el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R-t 330 (539)
T KOG0548|consen 252 ELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR-T 330 (539)
T ss_pred hHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-C
Confidence 2 222333444445666665555555554444433110 0 11122223345555666777777766554321 2
Q ss_pred cChhHH-------------------------HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 224 PWLEHY-------------------------GCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 224 p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
|+...- ..-...+.+.|++..|...|.++ ...| |...|.....+|.+.|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 221110 01123345567777777777766 3344 44467777777777777777
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|..-.+..++++|+....|.-=..++....+|++|.+.|++-.+.
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777667766666666777777777777766553
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=3.9e-05 Score=75.05 Aligned_cols=212 Identities=9% Similarity=0.068 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcc
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 102 (461)
...-..+...+.+.|-...|..+|++ +..|...|-+|...|+..+|..+..+..+ -+||+..|..+.+.....
T Consensus 398 Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 34445677888899999999999997 56788899999999999999999888777 378999999999888877
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHH
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFS 179 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 179 (461)
.-+++|.++.++.... .-..+.......++++++.+.|+.-.+ --..+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 7788888887765432 112233333457899999999986553 356789999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 180 LMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 180 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+ ++ ..+...|...+....+.|.+++|.+.+.++
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8877 5676 67899999999999999999999999876 35 445667777778888999999999998887
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00016 Score=69.12 Aligned_cols=142 Identities=17% Similarity=0.137 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHH--------HhhhhcCCccChhHHHHHHHHHHhc
Q 012539 170 AGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFD--------SMRREYGIEPWLEHYGCLVDLYGRA 239 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~ 239 (461)
.+..|.+++...-+. .|. .......+......|+++.|.+++. .+.+ +.-.+.+...++..|.+.
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKI 430 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhc
Confidence 455666666665543 333 3334444555667899999999988 4432 233455677788888888
Q ss_pred CCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 240 GRLDEALDVINKM--------PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 240 g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
++-+-|..++.+. ...+.. .+|.-+..--.++|+.++|...++++.+.+|++..+...++.+|++. +.+.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHH
Confidence 7766555555544 222222 24444444456779999999999999999999999999999999876 5566
Q ss_pred HHHHHHH
Q 012539 311 VINVRQI 317 (461)
Q Consensus 311 a~~~~~~ 317 (461)
|..+-+.
T Consensus 510 a~~l~k~ 516 (652)
T KOG2376|consen 510 AESLSKK 516 (652)
T ss_pred HHHHhhc
Confidence 7666543
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=6.6e-06 Score=80.20 Aligned_cols=188 Identities=19% Similarity=0.152 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 199 (461)
++|-...-..+.+.+..+|-...|..+|++. ..|.-.|.+|...|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4566666677888889999999999999875 4788888899999998899888888776 47888888888887
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMG 277 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 277 (461)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++.+.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777788888887765432 1111122223356666666666544 3333 334666666666677777777
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+.|..-..++|++...|+++..+|.+.|+-.+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 777777777777777777777777777777777777777666655
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=5.3e-05 Score=78.06 Aligned_cols=234 Identities=11% Similarity=-0.016 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
.+...|..|+..|...+++++|..+.+...+ | .+..|..+...+.+.++..++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------
Confidence 4667888888888888899998888886543 2 334455555577777776665554 3222
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHH
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 174 (461)
......++..+..++..+... ..+...+-.|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 222222222223333333332 12223444566666666666666666666553 3455666666666666 66666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012539 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254 (461)
Q Consensus 175 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (461)
.+++.+.... +....++..+.+++..+.. ..+.+...+..+... +...++.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~k------------i~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERK------------VLGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHH------------HHhhhcc
Confidence 6666665442 2333445555555555542 111112221111111 1111122
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
..-+.++-.+-..|...++++++..+++.+.+.+|.|..+..-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233444455555666666666666666666666666666666666554
No 108
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=0.00027 Score=65.38 Aligned_cols=209 Identities=11% Similarity=-0.034 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCG-KSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 99 (461)
.++..+-..+...+..++|+.+.+++.+. +..+|+.-...+...| ++++++..++++.+.+.+ +..+|+.....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 45666777788889999999999987754 4557777777777777 579999999999986533 455677665556
Q ss_pred hccCCH--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC---CCh
Q 012539 100 THLGAL--DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN---GAG 171 (461)
Q Consensus 100 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~ 171 (461)
.+.+.. +++..+...+++.. +-+..+|+...-++.+.|++++|++.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 666653 67788888888876 56788888888889999999999999999875 4678888887776654 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc----CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHh
Q 012539 172 ----EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV----GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGR 238 (461)
Q Consensus 172 ----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 238 (461)
+++++...++.... +-|...|+.+...+... +...+|...+..... ..| +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS---KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc---ccCCcHHHHHHHHHHHHh
Confidence 45677776766642 33566777777666662 344567777766543 233 45666777777764
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=7.1e-06 Score=66.71 Aligned_cols=120 Identities=9% Similarity=0.040 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-P 253 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 253 (461)
.+|++..+ +.|+. +..+..++...|++++|...|+.... +.| +...+..+..++.+.|++++|...|+.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 33443 33455566667777777777776653 233 4566677777777777777777777766 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 254 MKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 254 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
..| +...+..+..++...|+.++|...++.+.+..|+++..+.....+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 334 4456777777777777778888888888777777776665555443
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=3e-05 Score=66.65 Aligned_cols=116 Identities=12% Similarity=0.038 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhcCC--HHHH
Q 012539 67 CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM-YSKCGN--MNKA 143 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 143 (461)
.++.++++..+++..+.+ +.|...|..+...+...|+++.|...+++..+.. +.+..++..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555565555543 3355566666666666666666666666666654 3455555555554 345555 3666
Q ss_pred HHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 144 MDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 144 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
.+++++..+ .++.++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666665553 24556666666666666666666666666554
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.0001 Score=64.63 Aligned_cols=309 Identities=11% Similarity=0.004 Sum_probs=175.2
Q ss_pred ccCCchHHHHHHhcCCC-CCHHHHHHHHH--HHHHcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE-PDVVCQTAMIS--ACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHL 79 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 79 (461)
+.+.+.+|++|...+.+ ++...-..-+. ..-+.+++..+..+.++.+ +.+..+.+...-...+.|++++|++-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 45667778887777664 33322222222 2235788888889999888 45666666666667789999999999998
Q ss_pred HHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------------ch---------------HHHHHHH
Q 012539 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM-------------TV---------------TLGTALV 131 (461)
Q Consensus 80 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~li 131 (461)
..+-+--.....|+..+.. .+.++.+.|.+...+++++|+.. |+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 8775433345677766654 45688899999999988877531 11 1122223
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKER-----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 206 (461)
..+.+.|+++.|.+.+..|+.+ |++|...+.-.- ..+++.+..+-+.-+...+. -...||..++-.|++..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 3456778888888888888854 666655543322 23445555555555555432 3457888888888888888
Q ss_pred HHHHHHHHHhhhhcCC-ccChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHH----HHH
Q 012539 207 EEGREHFDSMRREYGI-EPWLEHYGCLVDLYG-RAGRLDEALDVINKMPMKPHAGAWGALLNA-CRMYKNTEM----GEL 279 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~----a~~ 279 (461)
+.|-+++.+-..- .. -.+...|+. ++++. ..-..++|++-++.+........-..-+.. -.++.+-++ +.+
T Consensus 327 ~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~ 404 (459)
T KOG4340|consen 327 DLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVN 404 (459)
T ss_pred hHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888777543210 00 112333433 33332 334556666554443100000000011111 112222111 222
Q ss_pred HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 280 ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
-++...++-- .+..+-...|.+..++..+.++|+.-.+
T Consensus 405 ~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 405 EYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2222222221 1334455667778888888888876544
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=3.4e-05 Score=78.55 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYG 230 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 230 (461)
.++..+..|.....+.|.+++|..+++...+ +.|| ......+...+.+.+.+++|....++... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3578889999999999999999999999988 5777 55667788889999999999999998874 355 467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCCh
Q 012539 231 CLVDLYGRAGRLDEALDVINKMP-MKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 308 (461)
.+..++.+.|++++|..+|+++- ..|+ ..+|.++..++...|+.++|...|+++.+...+-...|+.++. +.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 88889999999999999999983 3454 5688889999999999999999999999887665556555432 23
Q ss_pred hHHHHHHHHHHhCC
Q 012539 309 DRVINVRQIMKAKG 322 (461)
Q Consensus 309 ~~a~~~~~~m~~~g 322 (461)
..-...++.+.-.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (694)
T PRK15179 233 NADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHcCccc
Confidence 33444555554333
No 113
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.41 E-value=0.00029 Score=68.20 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=165.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
|..++..| ..+++...+.+.+..++. .+-...|.....-.+...|+.++|....+...+.. ..+.+-|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34444444 456777777777777662 22233454444445566777788877777666644 2344556666666666
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 137 CGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
..++++|++.|.... ..|...|.-+.-.-++.|+++.......++.+. .|. ...|..+..++--.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888887665 346677777776777778888777777777763 444 45566666677777888888888
Q ss_pred HHHhhhhcCCccChhHHHHHH------HHHHhcCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 012539 213 FDSMRREYGIEPWLEHYGCLV------DLYGRAGRLDEALDVINKMP-MKPHAGAW-GALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
.+...+...-.|+...|.-.. ....+.|.+++|.+.+.... ...|-..+ ..-...+.+.+++++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 887766433345555444332 33456788888888776652 11222222 23333477888899999999999
Q ss_pred hhccCCCcchHHHHHHHHh-hcCChhHHHHHHHHHHh
Q 012539 285 VELETKNHGAYVLLSNIYA-ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 285 ~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 320 (461)
+..+|++...|..+..++. -.+..+....++....+
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9999998878878877775 33333333355555433
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=0.00011 Score=72.71 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=96.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
..+|.+++|+.+|++-.+.. .|-..|-..|.+++|.++-+.-.+- =-.||..-..-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 45566666666666655432 2334455566666666654432211 0123333333333344455554444
Q ss_pred HHH----------HHcC---------CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc
Q 012539 179 SLM----------KQAG---------VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239 (461)
Q Consensus 179 ~~m----------~~~g---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 239 (461)
++. .... -..|...|..........|+.+.|+.+|..... |-+++...+-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeec
Confidence 431 1110 112444555555566678888888888876642 55677777778
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 240 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
|+.++|-++-++-+ |......|...|-..|++.+|..+|-++.
T Consensus 952 Gk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888888877754 56666677777888888888888877765
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=1.6e-05 Score=64.57 Aligned_cols=21 Identities=19% Similarity=-0.015 Sum_probs=8.1
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 012539 61 LAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~ 81 (461)
...+.+.|++++|...|++..
T Consensus 31 g~~~~~~g~~~~A~~~~~~al 51 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLV 51 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
No 116
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00027 Score=66.98 Aligned_cols=285 Identities=13% Similarity=0.050 Sum_probs=190.6
Q ss_pred HHHHHcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHhccCCHH
Q 012539 31 SACAKCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE-VSMVSVLSACTHLGALD 106 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~ 106 (461)
.+....|+++.|+.+|-+.. .+|.+.|..=..+|+..|++++|++=-.+-++ +.|+- -.|+-...++.-+|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999999754 34778888999999999999999987776666 56765 48999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC------------------------------------------------
Q 012539 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCG------------------------------------------------ 138 (461)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------------------------------------------------ 138 (461)
+|...|..-++.. +.+...++.|.+++.-..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999888764 556677777777662110
Q ss_pred ---CHHHHHHHHHhcC----------------CC------------CH----------HHHHHHHHHHHhCCChHHHHHH
Q 012539 139 ---NMNKAMDFFWGMK----------------ER------------NV----------YTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 139 ---~~~~A~~~~~~~~----------------~~------------~~----------~~~~~li~~~~~~g~~~~A~~~ 177 (461)
++..|.-.+.... .| |. .-...+.++..+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0111111111000 00 00 1234456666667778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--C----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--W----LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 178 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
+....... -+..-++....++...|...+....-....+. |-.. + ......+..+|.+.++++.|...|++
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88877743 33333445555677777666655554444332 2111 0 11222244467777888888888876
Q ss_pred C---CCCCCHHH-------------------------HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 252 M---PMKPHAGA-------------------------WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 252 ~---~~~p~~~~-------------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
. ...|+... ...=...+.+.|++..|...|.+++..+|+|+..|....-+|.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 5 11122111 1111234778899999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 012539 304 ESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~ 321 (461)
+.|.+..|.+=-+.-.+.
T Consensus 404 kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 999999998866655544
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00015 Score=73.88 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=117.6
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVS 195 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 195 (461)
.+.++..+-.|.......|.+++|+.+++...+ | +...+..++..+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 466688888899999999999999999999874 4 5678888999999999999999999999884 566 455566
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLN 266 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 266 (461)
+..++.+.|+.++|..+|+++... .+-+...+..+...+.+.|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 677888999999999999999862 2334788999999999999999999999988 33455556555543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=0.0001 Score=63.63 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=69.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 240 (461)
+-..+...|+-+.+..+..+.... .+.|.......+....+.|++.+|...+++... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 333444444444444444443221 111222223344444455555555555554432 33334455555555555555
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHH
Q 012539 241 RLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 314 (461)
++++|..-|.+. .+.| ++...+.|.-.+.-.|+.+.|..++.......+.+...-..|..+....|++++|..+
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 555555544444 2222 2334444444455555555555555555555554444555555555555555555444
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.2e-06 Score=51.84 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 89 (461)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.30 E-value=0.00035 Score=60.40 Aligned_cols=155 Identities=14% Similarity=0.037 Sum_probs=107.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCC
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNG 169 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 169 (461)
...-.++...|+-+....+....... .+.+..+.+.++....+.|++..|...|.+... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 45555666667666666665554332 245556666677778888888888888887663 46778888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
+.++|..-|.+..+. .|+ ...++.+.-.+.-.|+.+.|..++..... .-.-+..+-..+.......|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888887773 333 55666777777777888888888776643 2223566677777777888888888877
Q ss_pred HHhC
Q 012539 249 INKM 252 (461)
Q Consensus 249 ~~~~ 252 (461)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00095 Score=67.86 Aligned_cols=158 Identities=16% Similarity=0.263 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-..++....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555555554443 457999999999999999999888653 366789999999999999999999988665
Q ss_pred hhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
++ .-+|.+. +.||-+|++.+++.+-++++. -||..-...+..-|...|.++.|.-+|..+ +.|.-
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHH
Confidence 54 5555544 578899999999988887764 477777778888888888888888777654 45666
Q ss_pred HHHHHhhcCChhHHHHHHHHH
Q 012539 298 LSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m 318 (461)
|...+...|.+..|...-++.
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 677777777776666554443
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=3.1e-05 Score=73.05 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=61.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
+|+..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++.+.++.. +.+........+.+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555556666665555532 332 2234444444455555555555555432 334444444555555666
Q ss_pred CHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 139 NMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 139 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
+++.|+++.+++.+ | +..+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666665542 2 3345666666666666666666555544
No 123
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.30 E-value=0.00021 Score=70.03 Aligned_cols=287 Identities=12% Similarity=0.090 Sum_probs=148.9
Q ss_pred cccCCchHHHHHHhcCCC------------CCHH--HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 012539 3 AELGCLGYCQKVFDGIHE------------PDVV--CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~------------~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 68 (461)
-+..++++|.+.|+++-. |..+ .-.....-+.+.|+++.|..-|-+... .--.+.+.....
T Consensus 672 eki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~ak 746 (1636)
T KOG3616|consen 672 EKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAK 746 (1636)
T ss_pred HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhh
Confidence 344567788888876531 2111 112223334455666666555533211 111233444455
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 148 (461)
.+.+|+.+++.++.... -.--|..+...|+..|+++.|.++|.+. + .++-.|+||.+.|+|++|.++-.
T Consensus 747 ew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHH
Confidence 56666666665554321 2223445555566666666666555432 1 23345566666666666666655
Q ss_pred hcCCC--CHHHHHHHH--------------------------HHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 012539 149 GMKER--NVYTWTSVI--------------------------GGLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLR 198 (461)
Q Consensus 149 ~~~~~--~~~~~~~li--------------------------~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 198 (461)
+...| .+..|-+-. ..|-++|..+..+++..+- .|+ ..|...+..
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAK 890 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHH
Confidence 55443 223333333 3344444444444433332 222 234455566
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C-CHHHHHHH------HHHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK---P-HAGAWGAL------LNAC 268 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p-~~~~~~~l------l~~~ 268 (461)
-+...|++..|...|-+.. -|.+-+++|...+.+++|.++-+.-+-. . -...|..- +..+
T Consensus 891 e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred HHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHH
Confidence 6677788888877775442 3566788888888888888887655211 0 11133222 2223
Q ss_pred HhcCChHHHHH-------------HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 269 RMYKNTEMGEL-------------ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 269 ~~~~~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.++|-.+.+.. +.+...+- .-+.+..-+..-+...|++++|.+.+-+..+.+
T Consensus 961 nk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 44444444433 22222221 123456667777889999999988777666544
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00014 Score=68.26 Aligned_cols=177 Identities=11% Similarity=0.017 Sum_probs=126.5
Q ss_pred CHHHHHHHHHhcCC------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 012539 139 NMNKAMDFFWGMKE------RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 139 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
++.+++..-+.++. ++...+...+.+.........+..++-+-.+. .-...-|.. .-.+...|..++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence 34455555555553 35555666665544333333333333332221 111223333 3345567999999999
Q ss_pred HHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
++.+++ ..+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|.
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 999876 33446777788889999999999999999988 55676 557788888899999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 291 NHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++..|..|..+|...|+..++...+.++..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999998888877654
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0021 Score=55.84 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 241 RLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 241 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
.+.+|.-+|++| ...|+..+.+-...++...+++++|+.+++.+...+++++.+...++.+-...|+-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 445555555555 1334555555555555555555555555555555555555555555555555555433
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00081 Score=68.35 Aligned_cols=280 Identities=14% Similarity=0.212 Sum_probs=169.1
Q ss_pred CCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012539 6 GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85 (461)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 85 (461)
+-+++|..+|++- +-+...-+.||. .-++++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf-~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHh-cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 3455666666552 233333344443 23556666665555444 467888888888888888888777542
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------
Q 012539 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE------------- 152 (461)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 152 (461)
-|+..|..++..+.+.|.+++-...+..+.+...+|.+. +.|+-+|++.+++.+-+++...-..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 366778888888888888888888888777766666544 4678888888888777665432110
Q ss_pred ----------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCC
Q 012539 153 ----------RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222 (461)
Q Consensus 153 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (461)
.++.-|..|...+...|+++.|.+.-++. .+..||-.+-.+|...+.+..|. | +|+
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL 1273 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---CGL 1273 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---cCc
Confidence 13445666666666666666666555443 23456666666676665554332 2 232
Q ss_pred --ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh-hccCCCcchHHH
Q 012539 223 --EPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLV-ELETKNHGAYVL 297 (461)
Q Consensus 223 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~ 297 (461)
.....-..-|+..|...|-+++-..+++.. +.+. ....|+.|.-.|.+.+ ++...+.++-.- +.+ .--
T Consensus 1274 ~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvN------ipK 1346 (1666)
T KOG0985|consen 1274 NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVN------IPK 1346 (1666)
T ss_pred eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcc------hHH
Confidence 223444556788888888888888887765 4432 3335555555555543 333333322221 122 123
Q ss_pred HHHHHhhcCChhHHHHHHHHHHh
Q 012539 298 LSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+++++.++.-|.+..=++..-.+
T Consensus 1347 viRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1347 VIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 67777777777777766665443
No 127
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.24 E-value=0.00012 Score=74.10 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 244 EALDVINKM-P-MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 244 ~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.|...+.+. . ...+..+|+.|.-. ...|++.-+...|-+....+|.+..+|..+...+....+++.|...|...+
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 444544443 1 12344555555433 444555555555555555555555555555555555555555555555443
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.9e-06 Score=50.98 Aligned_cols=34 Identities=38% Similarity=0.691 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=5.4e-05 Score=71.45 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
...+|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++.... .+-+......-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 33456666777888999999999988777777777888888888888999998888764 23345555555666778888
Q ss_pred HHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 206 VEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
.+.|..+.+++.. ..|+ ..+|..|+.+|.+.|+++.|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8999999888863 4564 5688889999999999999998888887544
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00081 Score=63.25 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV-SVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGC 231 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 231 (461)
....+.-..-.+...|++++|+..++.+... .||..-|. .....+...++.++|.+.++.+.. ..|+ ......
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 3444555555667789999999999998875 56655444 556678899999999999999974 4665 667778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChh
Q 012539 232 LVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 309 (461)
+..+|.+.|++.+|..+++.. ...-|+..|..|-.+|...|+..++... ....|...|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 899999999999999999888 3334777999999999999998877644 456678899999
Q ss_pred HHHHHHHHHHhCC
Q 012539 310 RVINVRQIMKAKG 322 (461)
Q Consensus 310 ~a~~~~~~m~~~g 322 (461)
+|...+...+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887764
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=2.9e-06 Score=49.82 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCc
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 87 (461)
+.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3588999999999999999999999999988887
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00083 Score=58.20 Aligned_cols=251 Identities=9% Similarity=-0.018 Sum_probs=166.5
Q ss_pred HHHHHcCCHHHHHHHHhhCC-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMP-E-RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 108 (461)
.-|.-.|++..++..-.... . .++..-.-+-++|...|.+...+.- ... |-.|....+..+......-++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHH
Confidence 33444677777766554432 3 3455555667788888876655432 222 2234444444444444444444333
Q ss_pred -HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 012539 109 -RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187 (461)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 187 (461)
..+.+.+.......+......-...|...|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3445555555545554444555667899999999999998843 4444444455667788899999999999873
Q ss_pred CCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHH
Q 012539 188 PNEVTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAW 261 (461)
Q Consensus 188 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 261 (461)
-+..|.+-|..++.+ .+.+.+|.-+|++|.. ..+|++.+.+-+..+....|++++|..++++. ....++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 256677767777654 4578899999999964 47888889999999999999999999999988 323456666
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHhhccCCCc
Q 012539 262 GALLNACRMYK-NTEMGELASRKLVELETKNH 292 (461)
Q Consensus 262 ~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~ 292 (461)
..++......| +.+...+...++....|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666544444 44556677788888777754
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.18 E-value=7e-05 Score=60.23 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
....-.+...+...|++++|.++|+-+ ...| +...|..|..++...|++++|+..|.++..++|+++.++..+..++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455666778899999999999988 4445 55588889889999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 012539 304 ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~ 320 (461)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=4.5e-05 Score=61.36 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
......+...+...|++++|...++.+ ...| +...|..+...+...|+++.|...++++.+.+|+++.++..+..+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666666777777777777665 3233 44566666666777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 012539 304 ESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~ 321 (461)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 778888887777766654
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=0.00011 Score=59.03 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhC
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMN 168 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 168 (461)
...+...+...|++++|...+..+...+ +.+...+..+...|.+.|++++|...|+... ..+...|..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3334444445555555555555554443 3344444445555555555555555555443 12344444455555555
Q ss_pred CChHHHHHHHHHHHH
Q 012539 169 GAGEKSLELFSLMKQ 183 (461)
Q Consensus 169 g~~~~A~~~~~~m~~ 183 (461)
|++++|+..|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.2e-06 Score=48.70 Aligned_cols=33 Identities=33% Similarity=0.618 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 188 (461)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.001 Score=57.31 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMKER--N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 204 (461)
+.-+...+|+.+.|..+++.+..+ + +.-..+ .-+-..|++++|+++|+.+.+.. +.|.+++--=+...-..|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 333444556666666666655431 1 111111 12334577788888888877764 334556655555555567
Q ss_pred cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHH-H--hcCChHHHHH
Q 012539 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA-GAWGALLNAC-R--MYKNTEMGEL 279 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~-~--~~~~~~~a~~ 279 (461)
..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..|-. ..+..+...+ . ...+.+.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 76778777777765 45667888888899999999999998888888 345543 3444454442 2 2346788899
Q ss_pred HHHHHhhccCCCcchHHHHH
Q 012539 280 ASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~ 299 (461)
.|.+..++.|.+...+..+.
T Consensus 213 yy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHhChHhHHHHHHHH
Confidence 99999999997655444433
No 138
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0002 Score=64.32 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCcCHH-HHHHHHHHH
Q 012539 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-------SREALHLFHLMQIHDVKLNEV-SMVSVLSAC 99 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~ 99 (461)
.|+--|.+++++++|..+..+....++.-|-.-.-.++..|+ .+-|...|+-.-..+..-|.. --.++.+.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 344445566666666666555543333333222222223322 223333333222222222221 122233333
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHH-HHHHHhCCChHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSV-IGGLAMNGAGEKSL 175 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~ 175 (461)
.-..+++++.-.+..+...-...|...+| +..+++..|++.+|+++|-.+..+ |-.+|-++ ..+|.+.++++.|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 33445555555555555544444444444 555566666666666666555543 33344333 34555556665555
Q ss_pred HHHHHHHHcCCCCCHHHHHH-HHHHHhhcCcHHHHHHHHHHh
Q 012539 176 ELFSLMKQAGVRPNEVTFVS-VLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~ 216 (461)
+++-++.. +.+..+... +..-|.+.+.+--|-+.|+.+
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 55443321 122222222 223444555555555555544
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0013 Score=68.03 Aligned_cols=219 Identities=12% Similarity=0.059 Sum_probs=142.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
+...|..|+..|...+++++|.++.+...+. .|+... |..+...+.+.++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5668888999998999999999988876663 455443 33333344555554444333 233
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 209 (461)
+......++.-..-+...|.. .+..++..+..+|-+.|+.++|..+|+++.+.. +-|..+.+.+...++.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 333333444333333333332 234477788889999999999999999998864 33577888888888888 89999
Q ss_pred HHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 012539 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL- 287 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 287 (461)
.+++.++... |....++.++.+++.++ ...|+.. +.-.++.+++...
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~---------------d~f~~i~~ki~~~~ 217 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDF---------------DFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccc---------------hHHHHHHHHHHhhh
Confidence 9988877542 66666888888888877 3334332 2222233333321
Q ss_pred -cCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 288 -ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 288 -~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
...-..++..|-..|...++|+++..+++.+.+...
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 112234666777888899999999999999987543
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00062 Score=55.44 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLN---EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALV 131 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li 131 (461)
|..++..+ ..++...+...++.+..... .+ ......+...+...|++++|...|+.+......+. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344443 35556666555666655421 11 12222333455556666666666666665542222 12233355
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKER--NVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
..+...|++++|+..++....+ ....+..+...|.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566666666666666554432 223444555556666666666666654
No 141
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00095 Score=66.45 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=152.1
Q ss_pred CCHHHHHHHHH--HHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 21 PDVVCQTAMIS--ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 21 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
-|..|-.++++ .|..-|+++.|.+-.+-+.. -..|..|.+.|++..+.+-|.-.+-.|...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~a--------------- 786 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNA--------------- 786 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhh---------------
Confidence 35555555553 35556666666555544432 345666666666666665555444444321
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.. .+.+++..+.+-+ .-....-.....|.+++|..+|.+.++-| .|=..|-..|.+++|.++-
T Consensus 787 -------Rg-aRAlR~a~q~~~e----~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 787 -------RG-ARALRRAQQNGEE----DEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred -------hh-HHHHHHHHhCCcc----hhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHH
Confidence 11 1222333333211 11122333466789999999999877544 4556677889999999987
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh----------hhc--------CCccChhHHHHHHHHHHhcC
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR----------REY--------GIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~--------~~~p~~~~~~~li~~~~~~g 240 (461)
+.--+-.++ .||..-...+...++.+.|+++|++.. +++ .-..|...|.-....+-..|
T Consensus 850 E~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 850 ETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG 926 (1416)
T ss_pred hhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 754332232 455555555566777888877776431 110 01123444555555556678
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 241 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+++.|+.+|.... -|-+++...+-.|+.++|.++.++- .|..+...|.+.|...|++.+|...|.+..
T Consensus 927 emdaAl~~Y~~A~------D~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 927 EMDAALSFYSSAK------DYFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHHHhh------hhhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888877653 3556666667778888887776553 344577889999999999999999887764
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.017 Score=55.21 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 012539 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKP-HAGAWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
.+....++++++....+.|+ .+|..++..-.+..-+..|..+|.+. +..+ ++.+.++++.-++ .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44455566666554445554 46777888888888899999999888 3334 5667777777655 46788999999
Q ss_pred HHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 282 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
+.-.+..++++..-...+.-+...++-..+..+|++....++.+
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 99888888877665667777788888888888888888775543
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.94 E-value=0.017 Score=54.21 Aligned_cols=72 Identities=21% Similarity=0.170 Sum_probs=57.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 246 LDVINKMPMKP----HAGAWGALLNA--CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 246 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
..++++.++.| +...-|-|-.+ +..+|++.++...-.-+.+..| ++.+|..+.-+.....++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33445555444 34466777777 6789999999988888889999 7889999999999999999999999864
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.91 E-value=1.4e-05 Score=45.66 Aligned_cols=31 Identities=29% Similarity=0.692 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 85 (461)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777888888888888888877777653
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00018 Score=53.09 Aligned_cols=92 Identities=25% Similarity=0.271 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 306 (461)
+..+...+...|++++|...++++ ...|+ ...+..+...+...++++.|...++...+..|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777778777777765 33333 3466666666777788888888888888888877777888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 012539 307 NWDRVINVRQIMKA 320 (461)
Q Consensus 307 ~~~~a~~~~~~m~~ 320 (461)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.0015 Score=53.11 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCH
Q 012539 168 NGAGEKSLELFSLMKQAGVRPN---EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 242 (461)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555432 111 112222334445555566666555555543 21111 11223344555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 243 DEALDVINKMPMKP-HAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 243 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
++|+..++..+..+ ....+......+...|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555442111 122333333334555555555554443
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00042 Score=54.07 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=48.9
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNAC 268 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 268 (461)
.+...+...|++++|...|..+.....-.+ ....+..+...+.+.|++++|...++.+ ...|+ ..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444455555555555555543211101 1223344555555555555555555554 11222 23444555556
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcc
Q 012539 269 RMYKNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
...|+.+.|...++++.+..|++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666666543
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=2.1e-05 Score=44.90 Aligned_cols=29 Identities=38% Similarity=0.631 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
+|++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777777777777777777777777665
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.017 Score=49.92 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=118.6
Q ss_pred CChHHHHHHHHHHHH---CC-CCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 68 GKSREALHLFHLMQI---HD-VKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 68 g~~~~A~~~~~~m~~---~~-~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
.+.++.++++.++.. .| ..|+.. .|..++-+....++.+.|...+.++...- |.+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345666676666653 23 455554 35556666677788888888888777664 3333333322233445688888
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 143 AMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 143 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
|.++++.+.+. |.+++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 88888887753 4456666666666777777888888777665 667788888888888888888888888888763
Q ss_pred cCCcc-ChhHHHHHHHHHHhcC---CHHHHHHHHHhC
Q 012539 220 YGIEP-WLEHYGCLVDLYGRAG---RLDEALDVINKM 252 (461)
Q Consensus 220 ~~~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~~ 252 (461)
+.| ++..+..+.+.+--.| +++-|.+.|.+.
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344 4555566666654444 455566777665
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=3.7e-05 Score=56.03 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHH
Q 012539 240 GRLDEALDVINKM-PMKP---HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 240 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
|+++.|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555544 1112 233444455555566666666666655 4444444445555566666666666666666
Q ss_pred HH
Q 012539 316 QI 317 (461)
Q Consensus 316 ~~ 317 (461)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00043 Score=54.00 Aligned_cols=96 Identities=18% Similarity=0.046 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC---cchHHHH
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKN---HGAYVLL 298 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 298 (461)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999888 22343 3456667888999999999999999999988775 4568889
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCC
Q 012539 299 SNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.76 E-value=0.0051 Score=62.81 Aligned_cols=156 Identities=16% Similarity=0.065 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHH--HHHHHHH
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVT--FVSVLRG 199 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~--~~~ll~~ 199 (461)
.|..|...|...-+...|.+.|+..-+ .|..++......|+....++.|..+.-..-+ ..|- ... |.-..-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhcccc
Confidence 444455555544455555555554332 2344455555555555555555554211111 1111 011 1111223
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHH
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNA-CRMYKNTEM 276 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~ 276 (461)
|...++...+..-|+... .+.| |...|..+..+|.++|++..|.++|.++ ..+|+...-.-.... .+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 334444445555444443 2233 3445555555555555555555555444 223332211111111 344455555
Q ss_pred HHHHHHHHhh
Q 012539 277 GELASRKLVE 286 (461)
Q Consensus 277 a~~~~~~~~~ 286 (461)
+...+..+..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.037 Score=51.24 Aligned_cols=110 Identities=11% Similarity=0.134 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 271 (461)
+.+..+.-|...|....|.++-.+ +++ |+..-|-..+.+|+..+++++-.++... +..+..|..++..|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 445556667778888887777544 344 7888899999999999999998887654 44668899999999999
Q ss_pred CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 272 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999998887772 2356678899999999998775544
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.72 E-value=0.039 Score=56.08 Aligned_cols=214 Identities=15% Similarity=0.148 Sum_probs=115.3
Q ss_pred HcCCHHHHHHHHhhCCCCChh-HHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 35 KCGDVDLARKMFDEMPERDPI-AWNAMLAG--YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
..+++..|....+++.++.+. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-..|...++.+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 345666666666655433221 22233333 34667777777666665554433 666776676777777777777777
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHhcCCCCHHHHHHHHHHHHh-CCC---------hHHHHHH
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNK----AMDFFWGMKERNVYTWTSVIGGLAM-NGA---------GEKSLEL 177 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~-~g~---------~~~A~~~ 177 (461)
|+++.... |+......+-.+|++.+++.+ |.++++..+++--..|+.+ +.+.+ ... ..-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHH
Confidence 77766643 334454555666666655443 5556665555555555543 22221 111 1235555
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 178 FSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 178 ~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
++.+.+.+ ..-+..-...-+......|..++|.+++..-..+.-..-+...-+.-++.+...+++.+..++-.++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66665543 1112222222233445678888888888433222122223344455677788888888777666555
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00061 Score=50.09 Aligned_cols=91 Identities=16% Similarity=0.056 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445555555666666666666555432 1122344444455555555555555555555443 2223344444555555
Q ss_pred cCCHHHHHHHHHh
Q 012539 137 CGNMNKAMDFFWG 149 (461)
Q Consensus 137 ~g~~~~A~~~~~~ 149 (461)
.|++++|...|..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555555443
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0018 Score=59.08 Aligned_cols=134 Identities=11% Similarity=0.150 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888888888889998887542 2234444444333 33356777799999998875 4456677888889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 235 LYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+...++.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999887 22233 34899999999999999999999999998887743
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.67 E-value=0.00016 Score=50.36 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC-ChhHHHHHHHHHHh
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK-NWDRVINVRQIMKA 320 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 320 (461)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888999999999999999999999999999999999999999 79999999988765
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0031 Score=62.44 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..+.++.-.....|++++|...++++.+++| +..+|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444445666666666666666665 3445666666666666666666666555443
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0019 Score=59.41 Aligned_cols=256 Identities=9% Similarity=-0.015 Sum_probs=159.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
.....+.+...+..|+..+....+..+. +..-|..-+..+...++++++.--.++-++.. +.........-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 3444556666777777777777775422 34445555555566666666554444433321 111223333444444445
Q ss_pred CHHHHHHHHHhcC--------------------CCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 139 NMNKAMDFFWGMK--------------------ERNVYTWTSV-IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 139 ~~~~A~~~~~~~~--------------------~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
+..+|.+.|+.-. +|...+|..+ ..++...|++++|.+.--...+. .++ ..+...+
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHh
Confidence 5555544443211 0122334333 24567788888888877776653 222 1222223
Q ss_pred H--HHhhcCcHHHHHHHHHHhhhhcCCccChhHHH-------------HHHHHHHhcCCHHHHHHHHHhC-CCC-----C
Q 012539 198 R--GCCVVGLVEEGREHFDSMRREYGIEPWLEHYG-------------CLVDLYGRAGRLDEALDVINKM-PMK-----P 256 (461)
Q Consensus 198 ~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~~-~~~-----p 256 (461)
+ ++.-.++.+.|...|++.+ .+.|+-..-. .=..-..+.|++.+|.+.|.+. .+. |
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 2 3345678888988888775 4455422211 1123345789999999999887 444 4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+...|........+.|+.++|+.-.+.+.+++|.-..+|..-.+++...++|++|.+-++...+..
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666678899999999999999999999888889999999999999999999998876643
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0037 Score=57.23 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=59.2
Q ss_pred HHhhc-CcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---CC-C----CHH-HHHHH
Q 012539 199 GCCVV-GLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKMP---MK-P----HAG-AWGAL 264 (461)
Q Consensus 199 ~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~-p----~~~-~~~~l 264 (461)
.|... |++++|.+.|+....-+..... ...+..+...+.+.|++++|.++|++.. .. + +.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 5666666666655442221111 2345556667777778888877777651 11 1 111 22222
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCc-----chHHHHHHHHhh--cCChhHHHHHHH
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNH-----GAYVLLSNIYAE--SKNWDRVINVRQ 316 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~~~--~g~~~~a~~~~~ 316 (461)
+-++...||...|...+++....+|.-. .....|+.+|-. ...++++..-|+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 3345566788888888888877776421 233445555532 233444444443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.002 Score=54.22 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN--EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (461)
....+..+...+...|++++|+..|++.......+. ...+..+...+...|++++|...+.+.++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888888888888888888876433332 3567777777888888888888888887754 3345566667
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 204 (461)
..+|...|+...+..-++... ..+++|.+.+++.... .|+. +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 777777776655543332211 1245677777776653 3443 444444444433
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.64 E-value=0.037 Score=56.18 Aligned_cols=223 Identities=12% Similarity=0.035 Sum_probs=150.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 012539 64 YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC--THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141 (461)
Q Consensus 64 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 141 (461)
....+++.+|+....++.+. .|+.. |..++.++ .+.|..++|..+++.....+.. |..+...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567899999999988875 34443 44555554 6889999999888776665533 7888899999999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----------cHHHH
Q 012539 142 KAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG----------LVEEG 209 (461)
Q Consensus 142 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~a 209 (461)
+|..+|+...+ |+......+..+|.+.+.+.+-.+.--+|.+. .+-+...|-++++...+.- -+.-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999885 55566666777888887775544443333332 4445677777777665431 13456
Q ss_pred HHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh-C-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK-M-PMKP--HAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
.+.++.+.++.|-.-+..-.......+...|.+++|++++.. . ..-+ +...-+--+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 677777776543212222222333455678889999998832 2 1112 33344455566788888888888888888
Q ss_pred hccCCC
Q 012539 286 ELETKN 291 (461)
Q Consensus 286 ~~~p~~ 291 (461)
+.+++|
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 888887
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.64 E-value=0.0016 Score=52.44 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=69.2
Q ss_pred HHHHhhCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 012539 43 RKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121 (461)
Q Consensus 43 ~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 121 (461)
+..+..+. +.+......+...+.+.|++++|..+|+.+...+ +-+..-|..+..++-..|++++|...|....... +
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ 100 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-I 100 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 34444455 4555566666666777777777777777776643 2244455666666677777777777777777765 3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
.++..+-.+..+|.+.|+.+.|++.|+..
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555777777777777777777644
No 164
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0094 Score=51.73 Aligned_cols=168 Identities=11% Similarity=-0.005 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPER--D--------PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 94 (461)
-|++|+..+.-..-+++-+..|+.-..+ . ...-+.++..+.-.|.+.-.+.++.+.++...+.++.....
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3566666666555555555555543321 2 23446677777778888888899999888776668888888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchH-----HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 012539 95 VLSACTHLGALDQGRWAHVYIERNRLKMTVT-----LGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLA 166 (461)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 166 (461)
+.+.-.+.|+.+.|...++...+..-..+.. +.......|.-.+++..|...|++++. .|++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999998777644333333 333344456667888888888888774 45666666666666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNEVTFV 194 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 194 (461)
-.|+..+|++.++.|... .|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 678889999999998874 45444433
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.0077 Score=55.14 Aligned_cols=132 Identities=13% Similarity=0.197 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----CHH
Q 012539 127 GTALVDMYSKC-GNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-----NEV 191 (461)
Q Consensus 127 ~~~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~ 191 (461)
+..+...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455556665 677777666665542 11 2345556667777778888888887776532221 111
Q ss_pred -HHHHHHHHHhhcCcHHHHHHHHHHhhhhc-CCccC--hhHHHHHHHHHHh--cCCHHHHHHHHHhCCCCCCHH
Q 012539 192 -TFVSVLRGCCVVGLVEEGREHFDSMRREY-GIEPW--LEHYGCLVDLYGR--AGRLDEALDVINKMPMKPHAG 259 (461)
Q Consensus 192 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~p~~~ 259 (461)
.|...+-++...|+...|...++...... ++..+ ......|+.+|-. ...+++|..-|+.+. +.|..
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 22233334555677777777777664221 22222 2344455555543 245666666666664 33443
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.59 E-value=0.0035 Score=48.67 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLN--EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDM 133 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 133 (461)
-.+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++........+ +..+...+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3455667778888888888888888776544 2356667777888888888888888777653210 22222334445
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 166 (461)
+...|+.++|.+.+-...-++...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776555455555555554443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=0.00015 Score=52.73 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=31.5
Q ss_pred cCChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 67 CGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
+|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555543221 1222233344444444444444444444 21111 111222233444444455555444
Q ss_pred HHH
Q 012539 146 FFW 148 (461)
Q Consensus 146 ~~~ 148 (461)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0019 Score=48.36 Aligned_cols=81 Identities=11% Similarity=-0.051 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCchHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLG--------ALDQGRWAHVYIERNRLKMTVTL 126 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 126 (461)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 444567777778999999999999999999 999999999999876553 24456788899999999999999
Q ss_pred HHHHHHHHHh
Q 012539 127 GTALVDMYSK 136 (461)
Q Consensus 127 ~~~li~~~~~ 136 (461)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887664
No 169
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.00061 Score=62.54 Aligned_cols=257 Identities=11% Similarity=0.057 Sum_probs=155.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCC-CCchHHHHHHHHH
Q 012539 63 GYAQCGKSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIER----NRL-KMTVTLGTALVDM 133 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~ 133 (461)
-+++.|+....+.+|+..++.|.. |. ..|..+.++|.-++++++|.++|..=+. .|- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 356777777778888777776632 33 3455666677777777777777653211 010 0011122235555
Q ss_pred HHhcCCHHHHHHHHHhcC-------CC--CHHHHHHHHHHHHhCCC--------------------hHHHHHHHHHHH--
Q 012539 134 YSKCGNMNKAMDFFWGMK-------ER--NVYTWTSVIGGLAMNGA--------------------GEKSLELFSLMK-- 182 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 182 (461)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.+.|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 566677777754432211 11 12344445555544331 233444443321
Q ss_pred --HcCCC-CCHHHHHHHHHHHhhcCcHHHHHHHHHHh---hhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 012539 183 --QAGVR-PNEVTFVSVLRGCCVVGLVEEGREHFDSM---RREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM--- 252 (461)
Q Consensus 183 --~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--- 252 (461)
+.|-. .-...|..|.+.|.-.|+++.|...++.- .+++|-... ...+..+..++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 01234556666666678999998877642 234454433 457888899999999999999888764
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----c--CCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 253 ----PM-KPHAGAWGALLNACRMYKNTEMGELASRKLVEL----E--TKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 253 ----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+. .....+..+|...|.-..+++.|+.++.+-..+ + .....++.+|.++|...|..++|..+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 234457778888888888999999888775532 2 22456899999999999999999887766543
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0027 Score=53.20 Aligned_cols=81 Identities=7% Similarity=-0.069 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4467777777778888888888888776643222 12466777777777788888887777777653 33344455555
Q ss_pred HHHH
Q 012539 132 DMYS 135 (461)
Q Consensus 132 ~~~~ 135 (461)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0012 Score=55.63 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|+++.|...++++.+..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666666777766666655 11222 24666666677777888888888888888778777777777777
Q ss_pred HhhcCC--------------hhHHHHHHHHHHh
Q 012539 302 YAESKN--------------WDRVINVRQIMKA 320 (461)
Q Consensus 302 ~~~~g~--------------~~~a~~~~~~m~~ 320 (461)
|...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 777665 4556666655544
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.53 E-value=0.00063 Score=64.40 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=84.3
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
-...+...|++++|...|..+++. .| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345667789999999999998753 44 5778888899999999999999999888 4455 4557888888899999
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
++++|...++++.+++|.+......+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999988666555444
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.52 E-value=0.00032 Score=48.12 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...+...|++++|...|+.+.+..|.++..+..+..++...|++++|...+++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345777888888888888888888888888888888888888888888888887654
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0011 Score=58.80 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=87.1
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH-Hh--cCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNAC-RM--YKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 223 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~-~~--~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
+-|...|..|...|...|+++.|..-|.+. .+. +++..+..+..++ .+ .....++..+++++...+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447899999999999999999999999887 333 3455666666663 22 334678999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCccCCc
Q 012539 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 328 (461)
|...+...|++.+|...|+.|.+......|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999876654443
No 175
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.50 E-value=0.038 Score=53.04 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRG 199 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~ 199 (461)
+|..+++.-.+..-+..|+.+|.+..+ .++...++++.-|| .++.+-|.++|+-=.+. -+| ..--...+..
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHH
Confidence 344455555555555666666655542 14455555555554 34555666666543321 122 2222344555
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+.+.++-..++.+|++.+.. ++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 445 L~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55666666666666666554 45543 456666666666666666666655444
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.50 E-value=0.0097 Score=57.98 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCC-C----------CChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCcCHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMP-E----------RDPIAWNAMLAGYAQCGK--SREALHLFHLMQIHDVKLNEVS 91 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~-~----------~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~t 91 (461)
.+.+=+.-|...|.+++|.++=---. . -+..-++..=.+|.+..+ +-+.+.-+++|++.|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 34444445566666666655411100 0 122234444455655544 3445555677888887788764
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------------CHHH
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER--------------NVYT 157 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~ 157 (461)
. ...|+-.|.+.+|.++|.+ .|.+ |..+.+|.....++.|.++...-... |+.-
T Consensus 638 l---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 638 L---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred H---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 3 3456667888888888753 4422 34566777777777777766543211 1111
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH------HHHcCCC---CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSL------MKQAGVR---PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 228 (461)
=.+....+...|+.++|+.+.-+ +.+-+-+ .+..+...+...+.+...+..|-++|..|-.
T Consensus 706 PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 706 PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 11233444556666666654321 1221212 2334444444455566777778888877732
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
..+++++....+++++|..+-++.|
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCc
Confidence 2357788888888999988888884
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0044 Score=56.54 Aligned_cols=127 Identities=11% Similarity=0.043 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776432 2233333333333 22345566677777777765 35566667777777
Q ss_pred HHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766531 234666666666666777777777666665
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0022 Score=48.05 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhcC--------cHHHHHHHHHHhhhhcCCccChh
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLRGCCVVG--------LVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+|+.|+.. +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 444556666777999999999999999999 899999999998876532 345667888888865 8899999
Q ss_pred HHHHHHHHHHh
Q 012539 228 HYGCLVDLYGR 238 (461)
Q Consensus 228 ~~~~li~~~~~ 238 (461)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0014 Score=54.97 Aligned_cols=93 Identities=10% Similarity=-0.171 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
...+..++..+...|++++|...|++. ...|+ ..+|..+...+...|+.++|...++++....|....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888776 22232 2377888888999999999999999999998888888888888
Q ss_pred HHh-------hcCChhHHHHHHHHH
Q 012539 301 IYA-------ESKNWDRVINVRQIM 318 (461)
Q Consensus 301 ~~~-------~~g~~~~a~~~~~~m 318 (461)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888666666544
No 180
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0019 Score=61.17 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=82.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhc
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRA 239 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 239 (461)
....+...|++++|++.|++..+.. +-+...|..+..++...|++++|...++.++. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999998853 33467788888899999999999999999875 345 577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 012539 240 GRLDEALDVINKM-PMKPHAGAWGALLN 266 (461)
Q Consensus 240 g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 266 (461)
|++++|...|++. ...|+......++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 55666555444443
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.46 E-value=0.0014 Score=62.43 Aligned_cols=114 Identities=10% Similarity=0.037 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
......+++.+.+..+++.+..++-+.... -..+..++++.|...|..++++++++.=...|+-||.+|++.++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444555555555566666655554321 12244567777777777777777777666677777777777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
+.+.+.|++..|.++...|...+...+..++..-+..+.+
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777766665555555554433333333
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.035 Score=45.76 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=49.9
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHH
Q 012539 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTS 160 (461)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 160 (461)
-|+...-..+..+....|+..+|...|++...--+-.|..+...+.++....++...|...++.+-+ +++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444455555555555555555555555444444555555555555555555555555554432 12223333
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+...|...|++.+|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44455555555555555555544
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.40 E-value=0.047 Score=48.61 Aligned_cols=190 Identities=12% Similarity=0.018 Sum_probs=106.7
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHH
Q 012539 51 ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128 (461)
Q Consensus 51 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 128 (461)
+.++..+-.....+.+.|++++|.+.|+++...-..+... ....+..++.+.+++++|...+++.++........-+.
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3455555566677778889999999998888753322111 12345577788889999999998888764332222222
Q ss_pred HHHHHHH--hcC---------------CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 012539 129 ALVDMYS--KCG---------------NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191 (461)
Q Consensus 129 ~li~~~~--~~g---------------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 191 (461)
..+.+.+ ..+ +...+.+.++ .+..+|.-|-...-..+|...+..+... .-..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~--------~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR--------DFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKY 177 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH--------HHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHH
Confidence 2222221 111 2222222111 2333444444444445555544444321 0111
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.+ .+...|.+.|.+..|..-++.+++++.-.| .......++.+|...|..++|.+....+
T Consensus 178 e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 455667777777777777777777654444 3456667777888888888877766544
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.00061 Score=60.19 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=77.4
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTE 275 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~ 275 (461)
-..+.+++++|...|...+ .+.| |+..|..=..+|.+.|.++.|.+-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3566789999999999887 4566 4666777788999999999998877766 5556544 8899999999999999
Q ss_pred HHHHHHHHHhhccCCCcchHHHH
Q 012539 276 MGELASRKLVELETKNHGAYVLL 298 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l 298 (461)
+|++.|++.++++|++......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999999999987333333
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.089 Score=46.85 Aligned_cols=177 Identities=11% Similarity=0.100 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHH---HHHHHHHHhcCCHHHHHHHHHhcCC--CC--HHHHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG---TALVDMYSKCGNMNKAMDFFWGMKE--RN--VYTWTS 160 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~ 160 (461)
+...+-.....+...|++++|...|+.+...-..+ .... -.++.+|.+.+++++|...|++..+ |+ -..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33333344455567899999999999998864332 3332 3467888999999999999988764 21 122222
Q ss_pred HHHHHH--hCC---------------C---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 161 VIGGLA--MNG---------------A---GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 161 li~~~~--~~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
.+.+.+ ..+ + ..+|++.|+++.+. -|+ +.-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH-
Confidence 222222 111 1 23455666666553 333 22234444433333221
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKP-HAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 221 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
+ ...--.+...|.+.|.+..|..=++.+ |..| .......+..+|...|..++|..+...+.
T Consensus 174 -l---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 112235667788888888777766666 4333 33366778888999999999988776654
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.00094 Score=45.74 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
+...+.+.|++++|...|+++ ...|+ ...|..+..++...|++++|...++++.+..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677778888888888777 44454 34777777778888888888888888888888763
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.34 E-value=0.016 Score=57.52 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGA 260 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 260 (461)
...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 34444444444445666666666666542 3455566666666666666666666666554 33444333
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.00036 Score=48.33 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=43.1
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|...++++.+..|++...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888876553
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.16 Score=47.12 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh
Q 012539 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 238 (461)
+..|.-+...|+...|.++-.+.. .||..-|..-+.+++..+++++-..+-.. .-++.-|...++.+.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHH
Confidence 333444455566555555544442 34555555556666666666655543321 1123455556666666
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 239 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
.|+..+|..++..++. ..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 6666666666655321 2233344555555555444
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0028 Score=56.12 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=77.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcC
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAG 240 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 240 (461)
.-+.+.+++++|+..|.+.++. .| |.+-|..=..+|++.|..+.|.+-.+..+ .+.|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 4467788999999999999884 54 46666677888999999999988777665 45664 678899999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 012539 241 RLDEALDVINKM-PMKPHAGAWGALLN 266 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p~~~~~~~ll~ 266 (461)
++++|.+.|++. .+.|+-.+|-.=|.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999998887 77787776644433
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.26 E-value=0.0082 Score=57.28 Aligned_cols=119 Identities=10% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHHHH
Q 012539 85 VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN--RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----RNVYTW 158 (461)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 158 (461)
.+.+......+++.+....+++.+..++-..... ....-..+..+++..|.+.|..+++..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445666666666666666667776666665543 1112233445677777777777777776665443 566777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766555555556655555555443
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0036 Score=53.03 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=69.1
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcc-------------
Q 012539 43 RKMFDEM--PERDPIAWNAMLAGYAQC-----GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL------------- 102 (461)
Q Consensus 43 ~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 102 (461)
...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455554 456777777777777654 55666677778888888888888888888876442
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 103 ---GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 103 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
.+-+-|..++++|...|+-||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234567788888888888888888888888776654
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0038 Score=52.90 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-------------
Q 012539 144 MDFFWGM--KERNVYTWTSVIGGLAMN-----GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV------------- 203 (461)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 203 (461)
...|+.. ..+|..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455555 356777777777777653 56677777778888888888888888888765332
Q ss_pred ---CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 204 ---GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 204 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
.+-+-|.+++++|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 245668888888854 5888888888888888877764
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.0013 Score=46.21 Aligned_cols=58 Identities=5% Similarity=0.014 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
..+.+.++++.|..+++++...+|.++..+.....++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577888999999999999999999988999999999999999999999988876543
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.12 E-value=0.0063 Score=49.39 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChh
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 309 (461)
...-+-..|++++|..+|+-+ -.. -+..-|..|..++...++++.|...|.....+.++|+.++.....+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334456789999999999877 222 355678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012539 310 RVINVRQIMKA 320 (461)
Q Consensus 310 ~a~~~~~~m~~ 320 (461)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987765
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.07 E-value=0.25 Score=45.73 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=172.7
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHhhCC---CCChhHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCcCHH--HHHHHH
Q 012539 26 QTAMISACA--KCGDVDLARKMFDEMP---ERDPIAWNAMLA--GYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVL 96 (461)
Q Consensus 26 ~~~li~~~~--~~g~~~~A~~~~~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll 96 (461)
|.+|-.++. -.|+-..|.++-.+.. ..|....-.|+. +-.-.|+++.|.+-|+.|... |... -...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 444444433 3466666666655433 335444444443 334568888888888888762 2222 233344
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHH--HHHHHHHHHH---
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-----ERNVY--TWTSVIGGLA--- 166 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~--- 166 (461)
-...+.|..+.|+++-+..-... +.-...+.+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44467788888888777766543 3334566778888888899999988888654 34442 2223333222
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH--
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNEVT-FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD-- 243 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-- 243 (461)
-..+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+.+. .|.+..+...+ +.+.|+-.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~d 313 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALD 313 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHH
Confidence 13345666666555544 5677432 233456788889999999999888753 56555443333 44555422
Q ss_pred HHHH--HHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh-cCChhHHHHHHHHHH
Q 012539 244 EALD--VINKMPMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE-SKNWDRVINVRQIMK 319 (461)
Q Consensus 244 ~A~~--~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 319 (461)
...+ -++.| +| +..+-..+..+....|++..|..-.+.+....|.. ..|..|...-.. .|+-.++...+.+-.
T Consensus 314 RlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 1111 12333 44 44466667777888899999988888888888875 477778777654 488888888776654
Q ss_pred h
Q 012539 320 A 320 (461)
Q Consensus 320 ~ 320 (461)
+
T Consensus 391 ~ 391 (531)
T COG3898 391 K 391 (531)
T ss_pred c
Confidence 3
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.17 Score=43.75 Aligned_cols=179 Identities=12% Similarity=0.031 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
+-.....+.+.|++.+|...|+++...-... -......++.++-+.|+++.|...++..++.-......-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3344445556666666666666665532111 11233444555566666666666666655543211111111111111
Q ss_pred HhcCCHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH
Q 012539 135 SKCGNMNKAMDFFWGMKERN-------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 207 (461)
+.... ....+ ...+| ...+..++.-|-......+|...+..+... .- ..-..+...|.+.|.+.
T Consensus 88 ~~~~~---~~~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 88 SYYKQ---IPGIL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHH---HHHHH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HH
T ss_pred HHHHh---Cccch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHH
Confidence 10000 00000 11111 123444444554555555555544444321 00 01112445566666666
Q ss_pred HHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHH
Q 012539 208 EGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 244 (461)
.|..-++.+++.+.-.+. ......++.+|.+.|..+.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 666666666655322221 2344555666666666553
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.05 E-value=0.021 Score=44.39 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=58.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYG 237 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 237 (461)
+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888887776554 33555667777778888888888887765421111 1222233344566
Q ss_pred hcCCHHHHHHHHHh
Q 012539 238 RAGRLDEALDVINK 251 (461)
Q Consensus 238 ~~g~~~~A~~~~~~ 251 (461)
..|+.++|+..+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776644
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.03 E-value=0.15 Score=47.90 Aligned_cols=160 Identities=16% Similarity=0.059 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------CHHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKER-------NVYTWTSVIGGLAM---NGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
.|+-.|-...+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888999999999888753 12222233445566 7889999999988666556777778777766
Q ss_pred HHhh---------cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH----HHHHHH---HhC-------CCC
Q 012539 199 GCCV---------VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD----EALDVI---NKM-------PMK 255 (461)
Q Consensus 199 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~~-------~~~ 255 (461)
.|-. ....++|...|.+. +.+.|+..+--.++..+.-.|... +..++- ..+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6533 12466777777644 455666554444454555555322 222222 111 112
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.|-..+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 455567788888888999999999999998887764
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.01 E-value=0.15 Score=42.15 Aligned_cols=131 Identities=9% Similarity=-0.013 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHH
Q 012539 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKMP----MKPHAGA 260 (461)
Q Consensus 186 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~ 260 (461)
..|+...-..|..+....|+..+|...|++... |+-. |......+..+....+++..|...++++. ....+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 467777777788888899999999999988764 5543 56777778888888899999988888871 1112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.-.+...+...|.+..|+..|+.+...-|.- ..-......+.++|+.+++..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4455666888999999999999998877763 233444556678887777765554443
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.002 Score=44.74 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhccC
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK-NTEMGELASRKLVELET 289 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 289 (461)
+..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666677777777777776665 3334 3346666666777777 67777777777777766
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.39 Score=47.84 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 187 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
+.|....-.+..++.+.|.-++|.+.|-+- +. |. ..+..+...+++.+|.++-+...
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~-pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRR----SL-PK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhc----cC-cH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455666677777777776665322 21 21 23455666677777777766653
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.91 E-value=0.35 Score=44.81 Aligned_cols=268 Identities=13% Similarity=0.117 Sum_probs=172.6
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH--hccCCHHHHHHHHH
Q 012539 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQ--CGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC--THLGALDQGRWAHV 113 (461)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~ 113 (461)
.+..+.+.|..-+. -.-|.+|-.++.. .|+-..|.++-.+-.+. +..|.....-++.+- .-.|+.+.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34556666654332 2345555555544 56777787776655432 455666666666554 45689999999999
Q ss_pred HHHHcCCCCchHHH--HHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CC
Q 012539 114 YIERNRLKMTVTLG--TALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VR 187 (461)
Q Consensus 114 ~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 187 (461)
-|... |..... ..|.----+.|+.+.|+..-+..-. | -.-.|.+.+...+..|+++.|+++.+.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 99763 222221 2233333567999999988877654 2 34678899999999999999999999876543 45
Q ss_pred CCHH--HHHHHHHHHh--h-cCcHHHHHHHHHHhhhhcCCccChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 012539 188 PNEV--TFVSVLRGCC--V-VGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGA 260 (461)
Q Consensus 188 p~~~--~~~~ll~~~~--~-~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 260 (461)
++.. .-..|+.+-. . ..+...|...-.... .+.|+.. .-..-..+|.+.|++.++-.+++.+ ...|.+.+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 5532 2223333322 1 245566666555443 5667633 3334456899999999999999999 66788777
Q ss_pred HHHHHHHHHhcCChHHH-HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 261 WGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+...+.+ +.|+.... .+=.+++..+.|++......+..+-...|++..|..--+
T Consensus 299 a~lY~~a--r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 299 ALLYVRA--RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 7555443 44543222 233345556789998888888888888888877665433
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0048 Score=42.56 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=18.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
.|++++|+++|+++.... +-+......+..+|.+.|++++|..+++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444443321 112333333444444444444444444444
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.88 E-value=0.11 Score=45.03 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 27 TAMISACAKCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 27 ~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
=.....+.+.|++++|...|+.+... -..+.-.++.++.+.|++++|...|++..+.-+.-....+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 34555677899999999999987642 234677788999999999999999999887532222222333333222
Q ss_pred ccCC-------------HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 012539 101 HLGA-------------LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167 (461)
Q Consensus 101 ~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 167 (461)
.... ...|.. .+..++.-|-.+.-..+|...+..+.+.=...--.+..-|.+
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122233 334444555555555555555544432212222234566888
Q ss_pred CCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhcCcHHHH
Q 012539 168 NGAGEKSLELFSLMKQAGVRPN----EVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a 209 (461)
.|.+..|..-++.+.+. -|+ ......++.++.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88999999888888775 233 23455667777777777644
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.83 E-value=0.00086 Score=38.97 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=30.5
Q ss_pred HHHHhhccCCCcchHHHHHHHHhhcCChhHHHH
Q 012539 281 SRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
|+++++++|+++.+|..|..+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.83 E-value=0.013 Score=52.62 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc---chHHHHH
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKPHA----GAWGALLNACRMYKNTEMGELASRKLVELETKNH---GAYVLLS 299 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 299 (461)
.|...+..+.+.|++++|...|+.+ ...|+. ..+..+...+...|+++.|...|+.+.+..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666665 222332 2444555566677777777777777776666543 3444456
Q ss_pred HHHhhcCChhHHHHHHHHHHh
Q 012539 300 NIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777776654
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.66 Score=46.66 Aligned_cols=296 Identities=12% Similarity=0.098 Sum_probs=162.1
Q ss_pred cCCchHHHHHHhcCCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHEPD---VVCQTAMISACAKCGD---VDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
.+.+..|+++-.-+-.|. ..+|.....-+.+..+ -+-+..+=+++.. ..-++|..+.+..-+.|+++-|..+
T Consensus 450 r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kL 529 (829)
T KOG2280|consen 450 RHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKL 529 (829)
T ss_pred cchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHH
Confidence 455667777766554443 4566666666666532 2333444444444 3566788888877888888888877
Q ss_pred HHHHHHCCCC----cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----------CCCchHHHHHHHH---------
Q 012539 77 FHLMQIHDVK----LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-----------LKMTVTLGTALVD--------- 132 (461)
Q Consensus 77 ~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~--------- 132 (461)
++.=...+.+ .+..-+...+.-+...|+.+...+++-.+.+.- .|....+|.-++.
T Consensus 530 le~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d 609 (829)
T KOG2280|consen 530 LELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYD 609 (829)
T ss_pred HhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhh
Confidence 6532221110 122234455666667777777666665554321 1111122221111
Q ss_pred HHHhcCCHHHHHHHHH--hcC-----CCCHHHHHHHHHHHHhCCCh---HHH-------HHHHHHHH-HcCCCCCHHHHH
Q 012539 133 MYSKCGNMNKAMDFFW--GMK-----ERNVYTWTSVIGGLAMNGAG---EKS-------LELFSLMK-QAGVRPNEVTFV 194 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~~---~~A-------~~~~~~m~-~~g~~p~~~~~~ 194 (461)
.|-. ++...+...|. ... ..-..........+++.... ++| +++.+.+. +.|..-...+.+
T Consensus 610 ~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~ 688 (829)
T KOG2280|consen 610 FYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLH 688 (829)
T ss_pred hhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHH
Confidence 1111 11111111111 000 01111222233344443331 111 12222221 122223333444
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
--+.-+...|+..+|.++-.+.. -||...|-.=+.+++..+++++-+++-++.. .+.-|..+..+|.+.|+.
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccH
Confidence 45556667788888888766553 4677778778888888899888888777653 366788888889999999
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
++|.+++.+...+. -...+|.+.|++.+|.+.--+
T Consensus 761 ~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 99888766653322 467788888988888876543
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.2 Score=43.88 Aligned_cols=230 Identities=10% Similarity=-0.061 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-hccCC-HHHH-HHHHHHHHHcCCCCchHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC-THLGA-LDQG-RWAHVYIERNRLKMTVTLGTAL 130 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~-~~~a-~~~~~~~~~~~~~~~~~~~~~l 130 (461)
...|+.-+.++++....++|..-+.-.-..+ .||.. |...=..+ .+.|. ..-+ +.+|..+... -|+ -+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lgn--pqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LGN--PQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cCC--cHHHH
Confidence 3456666777777777777766555543322 12211 00000000 11121 1112 2233333321 111 23455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC--C--------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKER--N--------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+.-..-+++-...|+.-..| . ....+.++..+.-.|.+.-.+.++++..+...+.+......|.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 55555444444444444432221 1 2334555666666677777777777777755455666666777777
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccChhHHHHH-----HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCL-----VDLYGRAGRLDEALDVINKMPMK--PHAGAWGALLNACRMYKN 273 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~~~ 273 (461)
.+.|+.+.|..+|++..+..+ ..+....+.+ ...|.-.+++..|...+.+++.. .|+...|.-.-+..-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 777888888887776654322 2222222222 22344455566666666555221 122222222222233455
Q ss_pred hHHHHHHHHHHhhccCC
Q 012539 274 TEMGELASRKLVELETK 290 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p~ 290 (461)
...|.+..+.+.+..|.
T Consensus 302 l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 66666666666666555
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.92 Score=45.33 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC--C---hhHHHHHHHHHHHcCChHHHHHHH
Q 012539 6 GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER--D---PIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|.+++|.+++-.+-.+|. .|..+.+.|++-...++++.-... | ...|+.+...++....+++|.+.|
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444442 234455555555555555442211 1 224444444444444444444443
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.52 E-value=0.057 Score=48.54 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALL 265 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll 265 (461)
.|...+......|++++|...|+.+++.+.-.+ .+..+-.+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434456777777777777765432111 1245556777777777777777777776 11222 22444455
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
..+...|+.+.|...++.+.+..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 567778888888888888888888764
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.49 E-value=0.014 Score=55.44 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG----AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
...+..+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..+++++++.+. .|..+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 556677777777777777777777664 5556543 4777777777777777777777777775321 2221111
Q ss_pred --HHhhcCChhHHHHHHHHHHhCCCc
Q 012539 301 --IYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 301 --~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
.+....+.++..++++.+.+.|.+
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCc
Confidence 111223334566666666666653
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.47 E-value=0.043 Score=43.04 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH---------------cCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQ---------------AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
.++.++|.++++.|+.+....+++.... ....|+..+..+++.+|+..|++..|.++.+...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3445555555555555555555544321 1233444444444444444455555555554444444
Q ss_pred CCccChhHHHHHHH
Q 012539 221 GIEPWLEHYGCLVD 234 (461)
Q Consensus 221 ~~~p~~~~~~~li~ 234 (461)
+++-+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444444444443
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.43 E-value=0.012 Score=41.27 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
..|.+.+++++|.++++.+ ...|+ +..|......+...|++++|...++++.+..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567777888888777777 34443 3466666666788888888888888888888876543
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.43 E-value=0.0064 Score=37.75 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
.+|..+...+...|++++|+++++++.+..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999999887776653
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.40 E-value=0.58 Score=46.23 Aligned_cols=255 Identities=11% Similarity=0.069 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHH---------HHHHHCCCCcCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHcCCCC
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLF---------HLMQIHDVKLNEVSMVSVLSACTHLGALD--QGRWAHVYIERNRLKM 122 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~ 122 (461)
.+.+.+-+..|...|.+++|..+- +.+... ..+...++..-.+|.+..+.. +...-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 345555666778888888876531 111110 112333455556666655543 3334455677777767
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHHHHHHH-----HHHHHhCCChHHHHHHHHHHHH--cCCCCCHHHH
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKER--NVYTWTSV-----IGGLAMNGAGEKSLELFSLMKQ--AGVRPNEVTF 193 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~ 193 (461)
+... +.+.++-.|++.+|-++|.+--.. -...|+-| ..-|...|..++-..+.++-.+ ..++.....
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaA- 709 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAA- 709 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHH-
Confidence 7654 566777789999999999876643 33344432 3345566666665555554321 122222222
Q ss_pred HHHHHHHhhcCcHHHHHHHHHH-----hhhhc--CC-ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 012539 194 VSVLRGCCVVGLVEEGREHFDS-----MRREY--GI-EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~-----~~~~~--~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 265 (461)
...+...|+.++|..+..+ |.-+- .+ ..+.++...+..-+.+...+.-|.++|.+|+.. .+++
T Consensus 710 ---AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiV 780 (1081)
T KOG1538|consen 710 ---AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLV 780 (1081)
T ss_pred ---HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHh
Confidence 2233345666666543211 11000 11 123455555666667778888899999998632 2455
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcc----------hHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHG----------AYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
......+++.+|..+.++.-+..|+-.. -|.-.-.+|-++|+-.+|.++++++....+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 6667889999999999998877665322 234456788899999999999998866544
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.14 Score=41.53 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh----hcCCccChhHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR----EYGIEPWLEHY 229 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 229 (461)
.+...++..+...|++++|+.+.+.+.... +-|...+..+|.++...|+..+|.+.|+.+.+ +.|+.|++.+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566777778888888888888887752 44677888888888888888888888876643 45777776543
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.32 E-value=0.021 Score=46.49 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
....++..+...|+++.|....+.+...+|-+...|..++.+|...|+..+|.++|+.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556667788899999999999999999999999999999999999999999999998853
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.095 Score=46.88 Aligned_cols=100 Identities=13% Similarity=0.013 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc-C--CHHHHHHHHHhC-CCCCCHHHHHH-H
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA-G--RLDEALDVINKM-PMKPHAGAWGA-L 264 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g--~~~~A~~~~~~~-~~~p~~~~~~~-l 264 (461)
...|..|..+|...|+.+.|..-|....+- ..+++..+..+..++... | .-.++.++|+++ ...|+...-.. |
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 444444444444444444444444444321 111233333333332221 1 122444444444 33343332222 2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
...+...|++.+|...++.|.+..|++
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 233555555555555555555555554
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.23 E-value=0.41 Score=37.27 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=86.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34467778888888877653 24455666655444444555555555555332222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
....+-.++ .+.......+......|+.+.-.+++..+.+.+..++....-+..+|.+.|+..++.+++.+.-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555554443 344556667778889999999999999988766667788999999999999999999999999999985
No 221
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.86 Score=42.68 Aligned_cols=162 Identities=12% Similarity=-0.002 Sum_probs=104.2
Q ss_pred cCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH---------
Q 012539 87 LNEVSMVSVLS-ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY--------- 156 (461)
Q Consensus 87 p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------- 156 (461)
|...++..+-. .+.-.++.++|.++-..+++.. ..+....-.=..++.-.++.+.|...|++....|+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 33445544433 3467788888888877777754 222211111122334467889999999887754332
Q ss_pred ------HHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-h
Q 012539 157 ------TWTSVIGGLAMNGAGEKSLELFSLMKQA---GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-L 226 (461)
Q Consensus 157 ------~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 226 (461)
.|..-..-..+.|++..|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+... .+.|. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHH
Confidence 2333344567899999999999998763 244556667777777888999999998887665 34443 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
..|..-..++.-.+++++|.+-|++.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444556667888888888776
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.20 E-value=0.015 Score=41.36 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
++..+..++...|+.++|.+++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.13 E-value=0.061 Score=42.20 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012539 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268 (461)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 268 (461)
|..++..++.++++.|+++....+.+.. .|+.++...- .+. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4677888999999999999988888755 3555432110 000 111114556666777777776
Q ss_pred HhcCChHHHHHHHHHHhhccC--CCcchHHHHHHH
Q 012539 269 RMYKNTEMGELASRKLVELET--KNHGAYVLLSNI 301 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~ 301 (461)
...+++..|.++.+...+.-| -+..+|..|++=
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 666777777776666665332 223455555543
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=1.9 Score=43.54 Aligned_cols=246 Identities=12% Similarity=0.062 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--------
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPER--------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-------- 84 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------- 84 (461)
....+|..+..---.+|+++.|..+++.=+.. +..-+...+.-..+.|+.+-...++..|...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999998854321 22345556666777788777766665554321
Q ss_pred --CCc-CHHHHHHHHH---------HHhccCCHHHHHHHHHHHH-H-cCCCCchHHHHHHHHHHHhcCCHHHHHH-----
Q 012539 85 --VKL-NEVSMVSVLS---------ACTHLGALDQGRWAHVYIE-R-NRLKMTVTLGTALVDMYSKCGNMNKAMD----- 145 (461)
Q Consensus 85 --~~p-~~~t~~~ll~---------~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~li~~~~~~g~~~~A~~----- 145 (461)
..| ....|.-+++ .|-...+......++-+-. + ..+.+-........+.+++.....-..+
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 011 1112222221 1112222222222211110 0 0011112222334555555544222211
Q ss_pred -----HHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 146 -----FFWGMKER-----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 146 -----~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
+++.+... .-.+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 12222111 11234445666778899999998888764 57888887778899999999988777655
Q ss_pred hhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
.. ++.-|.-.+..+.+.|+.++|.+.+-+.+-.+ -...+|.+.|++.+|.+..-+
T Consensus 741 kk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 42 24567778999999999999999998875333 455667778888887766443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.79 E-value=0.022 Score=40.46 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc----cCC---CcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVEL----ETK---NHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+++.+...|...|++++|+..++++.++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666677777777777777776643 111 244677888888888888888888877543
No 226
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.70 E-value=0.71 Score=44.97 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=78.7
Q ss_pred HHHHcCChHHHHHHHH--HHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 63 GYAQCGKSREALHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~--~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
...-.|+++++.++.+ ++.. .+ +..-.+.++.-+.+.|..+.|.++-. |+.+ --+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCH
Confidence 3444566666555543 1111 11 23335555666666666666665422 2211 23445667777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 141 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
+.|.++-++.. +...|..|.....++|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+....+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 77766665544 555777777777777777777777766432 334555555666666555555544322
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 221 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
| -++....++.-.|++++..+++.+.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 23444444555566666666666554
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.65 E-value=0.62 Score=44.55 Aligned_cols=64 Identities=9% Similarity=-0.073 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERN 118 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 118 (461)
+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3446666666666666666666666666553 3442 24666666666666666666666666553
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.74 Score=41.27 Aligned_cols=137 Identities=10% Similarity=0.088 Sum_probs=76.2
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
......|++.+|..+|+.... .+...--.|+.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777788777776543 24455666777888888888888887776543222122222222333333333333
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCC
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-----NVYTWTSVIGGLAMNG 169 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 169 (461)
...+....-.. +.|...-..|...|...|+.++|.+.+-.+.++ |...-..|+..+..-|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333321 335666666777777777777777666655543 3344444555544444
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.62 E-value=0.18 Score=41.06 Aligned_cols=94 Identities=13% Similarity=-0.025 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.......-+-+.|++++|..+|+-+...+. -+..-+..|..++...+++++|...|........ .|+...--...+|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHH
Confidence 334444555667777777777776665432 2333445555556666677777777766555432 22222233566666
Q ss_pred hcCCHHHHHHHHHhcC
Q 012539 136 KCGNMNKAMDFFWGMK 151 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~ 151 (461)
..|+.+.|+..|....
T Consensus 117 ~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 117 LMRKAAKARQCFELVN 132 (165)
T ss_pred HhCCHHHHHHHHHHHH
Confidence 6677777766666544
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.57 E-value=0.14 Score=45.20 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=76.0
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC-----------
Q 012539 42 ARKMFDEMP--ERDPIAWNAMLAGYAQC-----GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG----------- 103 (461)
Q Consensus 42 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 103 (461)
....|.... ++|-.+|-+.+..|... +..+=....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67888888888888654 456666677888999999999999999998765432
Q ss_pred -----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 104 -----ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 104 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
+-+-+..++++|...|+.||-.+-..|++++++.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234577888899999999998888888888887664
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.53 E-value=1.4 Score=37.93 Aligned_cols=191 Identities=20% Similarity=0.156 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMK-----ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR-G 199 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~ 199 (461)
........+...+++..+...+.... ......+......+...+.+..+.+.+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 33334444444455544444444332 12233344444444444455555555555544222211 11111111 3
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEP----WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH--AGAWGALLNACRMYK 272 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~~ 272 (461)
+...|+.+.+...+..... ..| ....+......+...++.+.|...+... ...++ ...+..+...+...+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 140 LYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 4455555555555555422 111 1222223333344555556665555554 22222 345555555555566
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+.+.+...+.......|.....+..+...+...+.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666655333444444444455556666665555543
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.2 Score=46.65 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=78.2
Q ss_pred HHHHHcCCHHHHHHHHhhCCC------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPE------------------RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 92 (461)
+.|.+.|++..|..-|++... .-..+++.|..+|.+.+++.+|+..-.+.+..+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 467788888888888776331 023467777778888888888888888777764 4566666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH-HHHHHhcC
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA-MDFFWGMK 151 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 151 (461)
.--..++...++++.|+..|.++++.. |.|-.+-+.|+.+--+..+..+. .++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777888888888888888887764 33444555555554444444333 44554443
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.21 Score=46.51 Aligned_cols=138 Identities=17% Similarity=0.054 Sum_probs=96.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
...|.+.|++..|...|++.... |. +.+.-+.++...... . -...+..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA-L--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH-H--------HHHHhhHHHHHHHhhhh
Confidence 34677778888888877776542 00 111111122222111 1 13456778888999999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH-HHHHHHH
Q 012539 242 LDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV-INVRQIM 318 (461)
Q Consensus 242 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 318 (461)
+.+|+..-+.. ... +|+-....=..++...|+++.|...|+++++++|.|..+-.-|+.+-.+.....+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 333 46666667778899999999999999999999999988888888877776665554 6788888
Q ss_pred HhC
Q 012539 319 KAK 321 (461)
Q Consensus 319 ~~~ 321 (461)
...
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 234
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.39 E-value=0.33 Score=45.24 Aligned_cols=254 Identities=15% Similarity=0.112 Sum_probs=140.1
Q ss_pred HHHHcCCHHHHHHHHhhCCCC---C----hhHHHHHHHHHHHcCChHHHHHHHHH--HHH--CCCCc-CHHHHHHHHHHH
Q 012539 32 ACAKCGDVDLARKMFDEMPER---D----PIAWNAMLAGYAQCGKSREALHLFHL--MQI--HDVKL-NEVSMVSVLSAC 99 (461)
Q Consensus 32 ~~~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~~~~p-~~~t~~~ll~~~ 99 (461)
-+++.|+......+|+...+- | ...|..|.++|.-.+++++|++.-.. .+. .|-+. ...+-..+.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467888888888888876543 2 23566677777777778888775321 000 01000 111112222233
Q ss_pred hccCCHHHHHHHHH----HHHHcC--CCCchHHHHHHHHHHHhcCC--------------------HHHHHHHHHhcCC-
Q 012539 100 THLGALDQGRWAHV----YIERNR--LKMTVTLGTALVDMYSKCGN--------------------MNKAMDFFWGMKE- 152 (461)
Q Consensus 100 ~~~~~~~~a~~~~~----~~~~~~--~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~- 152 (461)
--.|.+++|.-.-. ...+.| +-.....|| |.+.|...|+ ++.|.++|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYN-lgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYN-LGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhh-hhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33344444432211 111111 111223444 6666665442 2333444432211
Q ss_pred ------C--CHHHHHHHHHHHHhCCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 153 ------R--NVYTWTSVIGGLAMNGAGEKSLELFSLMK----QAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 153 ------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
+ --..|..|...|.-.|+++.|+..-+.-. +.|-+. ....+..|.+++.-.|+++.|.+.|+....-
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0 11346666666667788888887655422 223221 2345677888888889999998888764321
Q ss_pred ---cCC-ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 220 ---YGI-EPWLEHYGCLVDLYGRAGRLDEALDVINKM-------P-MKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 220 ---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
.|- .......-+|...|.-...+++|+..+.+- + .-.....+-+|..++...|..+.|..+.+...+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 111 123445566778887778888888777554 1 112445677888888888888888888777664
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.31 E-value=0.17 Score=44.70 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=78.2
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-----------
Q 012539 143 AMDFFWGMK--ERNVYTWTSVIGGLAMN-----GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG----------- 204 (461)
Q Consensus 143 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------- 204 (461)
.++.|.... ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 67888888888887654 556777778889999999999999999998764432
Q ss_pred -----cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 205 -----LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 205 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
+-+-+..++++|. .+|+.||-++-..|+.++++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2344788999995 579999999999999999998864
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.28 E-value=1.7 Score=37.39 Aligned_cols=219 Identities=19% Similarity=0.074 Sum_probs=134.8
Q ss_pred CChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 68 GKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 68 g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555554443211 12445555556666666666666666655542 223444555556666666777777777
Q ss_pred HHHhcCC--CC-HHHHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 146 FFWGMKE--RN-VYTWTSVIG-GLAMNGAGEKSLELFSLMKQAGVRP----NEVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 146 ~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
.+..... ++ ......... .+...|+++.|...|.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7776653 21 122333333 67788888888888888755 233 23334444444566788888888888776
Q ss_pred hhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 218 REYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 218 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+. ... ....+..+...+...+.++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 42 222 3566777888888888888888888777 33444 344555555555677788999898888888876
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.10 E-value=0.82 Score=36.44 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=32.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
.....+.|++++|.+.|+.+... .+. ....-..|+.++...+++++|...+++.++-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444566666666666666553 111 1334455666666666666666666666544
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=2.5 Score=38.03 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=90.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCChH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN----VYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 172 (461)
......+++.++...+....... +-+......|+.+|...|+.+.|..++..++... .....+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567889999999999988765 3345566679999999999999999999988431 222233445555555555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC
Q 012539 173 KSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 240 (461)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|++.+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55555555443 44 5555566777788888888888776655543222223344445555444444
No 239
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.02 E-value=3.4 Score=39.43 Aligned_cols=274 Identities=14% Similarity=0.082 Sum_probs=124.9
Q ss_pred ccCCchHHHHHHhcCCC---CC------HHHHHHHHHHHHHcCCHHHHHHHHhhCCCC-ChhHHHHHHHH--HHHcCChH
Q 012539 4 ELGCLGYCQKVFDGIHE---PD------VVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAG--YAQCGKSR 71 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~--~~~~g~~~ 71 (461)
+.+++.+|.++|.++.+ .+ ...-+.++++|... +++.....+....+. ....|-.|..+ +-+.+++.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 45667777777766542 12 12344566666533 233333333222221 12233333332 23556677
Q ss_pred HHHHHHHHHHHC--CCCc------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CchHHHHHHHHH
Q 012539 72 EALHLFHLMQIH--DVKL------------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK----MTVTLGTALVDM 133 (461)
Q Consensus 72 ~A~~~~~~m~~~--~~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~ 133 (461)
+|++.+..-... +.+| |-.-=+..+.++...|++.+++.++.++...-++ -+..+|+.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 777766655443 2221 1111223344556667777777666666543333 566666666666
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh--cCcHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV--VGLVEEGRE 211 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~ 211 (461)
++++=-++ +-+.+...=..-|.-||..|.+.=+ .+++-.=..+-|....+..++.-..- .....--.+
T Consensus 177 lsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 177 LSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 65431111 1111111111233334444432111 01100001133333333333332221 111222223
Q ss_pred HHHHhhhhcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 212 HFDSMRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKM------PMK-PHAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~------~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
++..- +++-+.|+- -+...|+.-+.+ +.+++..+-+.+ +.+ .-..++..++....+.++...|.+.+..
T Consensus 247 ~l~~W-e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 247 ILENW-ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHH-HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33322 223455552 233344444444 444444444433 111 1234788888888999999999999888
Q ss_pred HhhccCCC
Q 012539 284 LVELETKN 291 (461)
Q Consensus 284 ~~~~~p~~ 291 (461)
+.-++|..
T Consensus 324 L~~ldp~~ 331 (549)
T PF07079_consen 324 LKILDPRI 331 (549)
T ss_pred HHhcCCcc
Confidence 88888764
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.95 E-value=3.4 Score=39.03 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+-..+..+..+..-.|+.++|.+..++|
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456678888888999999999999988
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.81 E-value=0.83 Score=42.02 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=22.1
Q ss_pred HHHhcCChHHHHHHHHHHhhcc--CCC----cchHHHHHHHHhhcCChhHHHHHH
Q 012539 267 ACRMYKNTEMGELASRKLVELE--TKN----HGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
+++..|....|.+..++..++- ..| ......+...|...|+.+.|..-|
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 3555555555555555544321 111 122234555555555555544433
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.77 E-value=2.9 Score=41.35 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=81.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC-CCCc-----hHHHHHHHHHHHh----cCCHHHHHHHHHhcCC--CCHHHHHH
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNR-LKMT-----VTLGTALVDMYSK----CGNMNKAMDFFWGMKE--RNVYTWTS 160 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~ 160 (461)
..+++...=.|+-+.+.+.+.+..+.+ +... .-.|...+..++. ..+.+.|.++++.+.. |+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345555555566666666666554422 1111 1223333333322 3456667777776664 55554443
Q ss_pred HH-HHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH-HH
Q 012539 161 VI-GGLAMNGAGEKSLELFSLMKQAG---VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV-DL 235 (461)
Q Consensus 161 li-~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~ 235 (461)
.- ..+...|+.++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.+.....+ ..|.-+. .+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk--a~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK--AFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH--HHHHHHHHHH
Confidence 32 34555677777777777544211 111233344455556667777777777777765433322 2332222 23
Q ss_pred HHhcCCH-------HHHHHHHHhC
Q 012539 236 YGRAGRL-------DEALDVINKM 252 (461)
Q Consensus 236 ~~~~g~~-------~~A~~~~~~~ 252 (461)
+...|+. ++|.++|.+.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 4455555 7777777766
No 243
>PRK09687 putative lyase; Provisional
Probab=94.67 E-value=3.4 Score=37.69 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh----HHHHHHHHHH
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS----REALHLFHLM 80 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 80 (461)
.+|..+....+.++...|..+-...+..-+..+|+..-...+.++.+.|+. .+++..+..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 345555555555555555433333333323334444444555555555542 2344444444
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.61 E-value=0.41 Score=42.36 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRP--NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVD 234 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 234 (461)
|+.-+..| +.|++..|...|....+..... ....+..|..++...|+.++|..+|..+.++++-.|. +...--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55444433 4555666666666666542110 1223344666666666666666666666655444443 244555555
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 012539 235 LYGRAGRLDEALDVINKM 252 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~ 252 (461)
...+.|+.++|..+|+++
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555555555555555554
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.59 E-value=1.6 Score=41.48 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHH-HHHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTW-TSVIGG 164 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~ 164 (461)
...|...+++-.+..-++.|+.+|.++.+.+ +.+++.++++++..|+ .|+..-|..+|+.-. -+|...| +..+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3556667777777777788888888887777 5567777787777666 567777777777433 2444333 334455
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 237 (461)
+...++-+.|..+|+..... +..+ ...|..+|+.-+.-|++..+..+-+++.. +.|...+.......|+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---HcCcHhHHHHHHHHHh
Confidence 56677777788888754332 2222 34677777777777888777777777754 3455444444444444
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.55 E-value=3.6 Score=37.52 Aligned_cols=60 Identities=8% Similarity=-0.020 Sum_probs=26.6
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 91 SMVSVLSACTHLGALD---QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 91 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
++..++.++...+..+ ++..+.+.+.+.. +..+.++-.-++.+.+.++.+++.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3444445554444332 3333444443322 2223333333444445556666666665554
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.45 E-value=1.1 Score=35.77 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=29.5
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 237 GRAGRLDEALDVINKM----PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 237 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+.|++++|.+.|+.+ |..| ....--.++.++.+.+++++|...+++.++++|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3455555555555555 2112 122334455556666666666666666666666543
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=1.7 Score=39.69 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHH--HHHHHhhcCcHHHH
Q 012539 137 CGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT--FVS--VLRGCCVVGLVEEG 209 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~--ll~~~~~~g~~~~a 209 (461)
.|+..+|-..++++.+ .|..+|.--=.++...|+.+.-...+++.... ..||... |.. ..-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555542 35555555555666666666655555555432 2233222 211 11122345556666
Q ss_pred HHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 210 REHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
++.-++.. .+.| |...-.++...+.-.|++.++.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555443 2222 2333344455555556666666655544
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.42 E-value=2.7 Score=41.56 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=105.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChh
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNE-----VTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ....+.+.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555666889999999998876532 22211 123333333332 45778899999999764 56655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHH-H
Q 012539 228 HYGCL-VDLYGRAGRLDEALDVINKMPM-K-----PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL-S 299 (461)
Q Consensus 228 ~~~~l-i~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 299 (461)
.|... ...+...|++++|.+.|++.-. + .....+--+.-.+....++++|...+..+.+...-+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 4566778999999999997621 1 1222344444557778899999999999998776655555544 4
Q ss_pred HHHhhcCCh-------hHHHHHHHHHHhC
Q 012539 300 NIYAESKNW-------DRVINVRQIMKAK 321 (461)
Q Consensus 300 ~~~~~~g~~-------~~a~~~~~~m~~~ 321 (461)
-++...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 445677888 7888888876543
No 250
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.40 E-value=2.2 Score=40.63 Aligned_cols=235 Identities=11% Similarity=0.091 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh--
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT-- 100 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-- 100 (461)
+.+|----.-+...++-+.|+...+.-..-.+..---+...|--..+-++....|++..+. + ..-| ..+.+=+
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-L---~r~y-s~~~s~~~s 376 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-L---KRKY-SMGESESAS 376 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-H---HHHH-hhhhhhhhc
Confidence 3444433344455677788888776644322221112233344444555555555554321 0 0001 1111111
Q ss_pred -ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHH
Q 012539 101 -HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 101 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A 174 (461)
.-|+++...+++-.-+ ..-..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|
T Consensus 377 ~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta 451 (660)
T COG5107 377 KVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATA 451 (660)
T ss_pred cccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchH
Confidence 1233432222221111 12345677788888888889999999988764 57888999998877 5778899
Q ss_pred HHHHHHHHHcCCCCCHHHH-HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 175 LELFSLMKQAGVRPNEVTF-VSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 175 ~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
..+|+-=... -||...| ...+..+...++-+.|+.+|+..+.+ +..+ ...|..+|+--..-|++..+..+-+.
T Consensus 452 ~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~r 527 (660)
T COG5107 452 YNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEER 527 (660)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence 9999865442 3454443 45667778899999999999966542 3333 56899999999999999988877776
Q ss_pred C-CCCCCHHHHHHHHHHHHhc
Q 012539 252 M-PMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 252 ~-~~~p~~~~~~~ll~~~~~~ 271 (461)
+ ..-|...+-..+.+.|.-.
T Consensus 528 f~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 528 FRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHcCcHhHHHHHHHHHhhh
Confidence 6 2234444444444444433
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.40 E-value=2.1 Score=34.24 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=21.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
.++..+...+.......+++.+.+.+ +.+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444455555555555555544 2444455555555554
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.36 E-value=8.9 Score=41.22 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.2
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHHH
Q 012539 58 NAMLAGYAQCG--KSREALHLFHLMQI 82 (461)
Q Consensus 58 ~~li~~~~~~g--~~~~A~~~~~~m~~ 82 (461)
-.+|.+|++.+ ..++|+....+.+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35778888887 66777777777664
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.18 E-value=0.93 Score=44.18 Aligned_cols=151 Identities=14% Similarity=0.064 Sum_probs=83.3
Q ss_pred cCCchHHHHHHh--cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 5 LGCLGYCQKVFD--GIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 5 ~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
.|+++++.++.. ++. .-+..-.+.++..+-+.|-.+.|+.+-.. +. .-.....+.|+.+.|.++.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~---~rFeLAl~lg~L~~A~~~a~~-- 343 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----PD---HRFELALQLGNLDIALEIAKE-- 343 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH---HHHHHHHHCT-HHHHHHHCCC--
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----hH---HHhHHHHhcCCHHHHHHHHHh--
Confidence 466677555443 122 11245578888888888888888887432 21 223344567777777665432
Q ss_pred HCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHH
Q 012539 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161 (461)
Q Consensus 82 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 161 (461)
.++...|..|.......|+++.|+..+.+... +..|+-.|.-.|+.+.-.++-+....++- ++..
T Consensus 344 ----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~n~a 408 (443)
T PF04053_consen 344 ----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--INIA 408 (443)
T ss_dssp ----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHH
T ss_pred ----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--HHHH
Confidence 23566777777777777777777777665432 34466667777777666666655443321 3444
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 012539 162 IGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~ 180 (461)
..++...|+.++..+++.+
T Consensus 409 f~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4445555666666666654
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=94.11 E-value=3.1 Score=40.05 Aligned_cols=157 Identities=9% Similarity=0.054 Sum_probs=98.7
Q ss_pred HHH--HHHHHHHHhCC-----ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHhh---------cCcHHHHHHHHHHhh
Q 012539 156 YTW--TSVIGGLAMNG-----AGEKSLELFSLMKQ-AGVRPN-EVTFVSVLRGCCV---------VGLVEEGREHFDSMR 217 (461)
Q Consensus 156 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 217 (461)
..| ...+.+..... ..+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.++-....
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 34678889998872 236666 3344433333221 234455666666555
Q ss_pred hhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 218 REYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 218 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
+ +.| |+.....+..++.-.|+++.|..+|++. ...||.. +|....-.+.-.|+.++|...+++..++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 333 5666667777778888899999999888 5567655 55555555677899999999999999999885432
Q ss_pred --HHHHHHHHhhcCChhHHHHHHH
Q 012539 295 --YVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 295 --~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
....+..|... ..++|++++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 22333455554 3566666553
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=3.8 Score=35.81 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=107.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--HHHHHHHHHHHHhC
Q 012539 91 SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN--VYTWTSVIGGLAMN 168 (461)
Q Consensus 91 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 168 (461)
.|.....+|-...+++++...+.+..+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555556666777777777766665532 1222222221 233455555555555432 34466667778888
Q ss_pred CChHHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 169 GAGEKSLELFSLMKQ--AGVRPNE--VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 169 g~~~~A~~~~~~m~~--~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
|.++.|-..+++.-+ .++.|+. ..|.--+......++...| ...+......|.+...+++
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhH
Confidence 887777777766533 2344442 1222222222222222222 2334445556667777777
Q ss_pred HHHHHHhCC-------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhc----cCCCcchHHHHHHHHhhcCChhHHH
Q 012539 245 ALDVINKMP-------MKPHAG-AWGALLNACRMYKNTEMGELASRKLVEL----ETKNHGAYVLLSNIYAESKNWDRVI 312 (461)
Q Consensus 245 A~~~~~~~~-------~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~ 312 (461)
|-..+.+-. .-|+.- .+-+.|-.+.-..++..|++.++.-.+. .|.+..+...|+.+|- .|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 666554431 112321 3444444455566888888888875543 3556667778887774 56666665
Q ss_pred HHH
Q 012539 313 NVR 315 (461)
Q Consensus 313 ~~~ 315 (461)
++.
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 554
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.99 E-value=4.1 Score=35.95 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSV 196 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l 196 (461)
...|+. +..-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....- -.|| .-|..-
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Y 112 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYY 112 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHH
Confidence 344443 33345678888888888877642 22344555667777888888888888876642 2233 233333
Q ss_pred HHHHhh---c----CcH---HHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-H-HH
Q 012539 197 LRGCCV---V----GLV---EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW-G-AL 264 (461)
Q Consensus 197 l~~~~~---~----g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~-~l 264 (461)
|.+.+. . .+. .+|..-|+.++.+ -|+.. -..+|..-+..+ .|.... . .+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKL---NDALAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHH---HHHHHHHHHHH
Confidence 333321 1 122 2233333333332 12210 011111111111 011111 1 22
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcc---hHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHG---AYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..-|.+.|.+..|..-++.+.+.-|+... .+..+..+|...|..++|...-+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 23378889999999999999887665433 5667788899999999998887766543
No 257
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=8.4 Score=39.45 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=94.2
Q ss_pred ccCCchHHHHHHhcCCC--C---CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE--P---DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
+.+.+++|..+.+.... | -..++...|..+.-.|++++|-...-.|...+..-|---+..++..++......+
T Consensus 368 ~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~-- 445 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY-- 445 (846)
T ss_pred HhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc--
Confidence 45677888888766442 2 3467888899999999999999999889888888888888888887776554332
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH------------------HHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV------------------YIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 79 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~------------------~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
+.....+.+...|..+|-.+.. .+...-.++.. +..+. ..+...-..|+..|...+++
T Consensus 446 -lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 446 -LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred -CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccCh
Confidence 2211122345566666666554 22211111111 11111 11223444599999999999
Q ss_pred HHHHHHHHhcCCCCH
Q 012539 141 NKAMDFFWGMKERNV 155 (461)
Q Consensus 141 ~~A~~~~~~~~~~~~ 155 (461)
++|.+++-...++++
T Consensus 522 ~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 522 EKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHhccChHH
Confidence 999999988876644
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=93.83 E-value=1.4 Score=42.28 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 205 LVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRA---------GRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
..+.|..+|.+......+.|+ ...|..+...+... ....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788889888744456775 45565555544322 2344566666555 3344 5556666666667778
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+.+.|...|+++..++|+.+.+|........-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999986554
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.79 E-value=6.8 Score=38.05 Aligned_cols=143 Identities=7% Similarity=-0.047 Sum_probs=77.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
++.-.-+..++..-+++-++.++ +.||..+.-.++ +--......++++++++..+.|-. .+........
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~~~~~- 242 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------SLGKSQFLQH- 242 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------hhchhhhhhc-
Confidence 34444455666666666666665 456654433332 223445678888888887765411 0100000000
Q ss_pred HHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 140 MNKAMDFFWGMKERN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 140 ~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
.-..++....++ +.+-..+..+.-+.|+.++|++.|++|.+....- +......|+.++...+...++..++.
T Consensus 243 ---~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 243 ---HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ---ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 001111122222 2233445566667788888888888886542111 23345567778888888888888877
Q ss_pred Hh
Q 012539 215 SM 216 (461)
Q Consensus 215 ~~ 216 (461)
+.
T Consensus 320 kY 321 (539)
T PF04184_consen 320 KY 321 (539)
T ss_pred Hh
Confidence 65
No 260
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.64 E-value=8.2 Score=38.26 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
+|..-++.-.+.|+.+.+.-.|++..-| =...|--.+.-.-..|+.+-|-.++....+--++-...+-..-...+-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 3334444444444444444444444332 1122333333333346666666555555443222222222111222345
Q ss_pred cCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HHhcC
Q 012539 203 VGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEAL---DVINKM-PMKPHAGAWGALLNA-----CRMYK 272 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~~~~ 272 (461)
.|+...|..+++.+..+ . |+ +..-..-+....+.|..+.+. .++... +.+-+..+...+.-- +...+
T Consensus 379 ~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred hccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 78999999999988764 3 54 333344456667788888877 444443 222233322222221 45567
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
+.+.|..++.++.+..|++...|..+++.....+.
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 88999999999999999998888888887776653
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=1.3 Score=36.31 Aligned_cols=135 Identities=15% Similarity=0.035 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchH-HHHHH-
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-LGTAL- 130 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 130 (461)
-..|..-+. .++.+..++|+..|..+.+.|...-++ ...-........|+...|...|+++-+....|-+. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 356677888888888887776543222 12222334567778888888888877654444332 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHhcCCC-C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 131 -VDMYSKCGNMNKAMDFFWGMKER-N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 131 -i~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
.-.+...|.+++...-.+-+..+ + ...-.+|.-+-.+.|++.+|.+.|.++......|-
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 22345678888877777766532 2 23455666677788888888888888866444443
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.59 E-value=3.1 Score=33.26 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhC
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMN 168 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 168 (461)
++..+.+.+.......+++.+... +....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 444444445555555555544322 233445555555443
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.58 E-value=0.15 Score=29.22 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777775
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.55 E-value=0.95 Score=35.21 Aligned_cols=89 Identities=24% Similarity=0.228 Sum_probs=53.9
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc----chHHHHHHHHhhcCCh
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH----GAYVLLSNIYAESKNW 308 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 308 (461)
+++..|+++.|++.|.+. ..-| ....||.-..+++-.|+.++|..-++++.++--+.. .+|.--...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455666777777666655 2222 444666666677777777777777777666532211 2455555566677777
Q ss_pred hHHHHHHHHHHhCCC
Q 012539 309 DRVINVRQIMKAKGV 323 (461)
Q Consensus 309 ~~a~~~~~~m~~~g~ 323 (461)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777777776665553
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.22 E-value=0.27 Score=28.04 Aligned_cols=32 Identities=31% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.|..+...+...|++++|...++++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777653
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.12 E-value=0.5 Score=42.45 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777788888888888888899998888999999999999999999998888876
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=2 Score=38.08 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCH-HHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHA-GAWGALL 265 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~-~~~~~ll 265 (461)
.|+.-+. +...|++..|.+-|...++.+.-.+ ....+-.|...+...|++++|..+|..+ |..|.. ..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 3455667888887777776432111 2334555777777777777777776655 323322 3455555
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
......|+.++|...++++.+..|...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 556677777777777777777776654
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.03 E-value=0.78 Score=41.27 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCcCHHHHHHHHH
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQI-----HDVKLNEVSMVSVLS 97 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~ 97 (461)
+..++..+..+|+++.+...++++... |...|..|+.+|.+.|+...|+..|+++.. .|+.|...+......
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 445566666777777777777766543 455777777777777777777777776654 456665555444333
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.93 E-value=8.4 Score=36.33 Aligned_cols=148 Identities=11% Similarity=-0.019 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LE 227 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 227 (461)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888999999999999998887643111 2233333455566678888888888777652 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 228 HYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGAWGALLNACRM------YKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
....+...+.. ..+.....- .......-...+..+..-+.. .+..+.+...|+.+.+..|....+|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 000000000 000000001122222222223 377888889999999998887777776665
Q ss_pred HHh
Q 012539 301 IYA 303 (461)
Q Consensus 301 ~~~ 303 (461)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 554
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.75 E-value=0.5 Score=29.07 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
.+|..+...|.+.|++++|.++|++.++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666777777777777777777777764
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.75 E-value=2.6 Score=32.86 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+.+..|+++.|++.|.+.. ......||.-..++.-+|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455566666666665543 23455566666666666666666666655544
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.73 E-value=3.7 Score=37.75 Aligned_cols=92 Identities=15% Similarity=0.262 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCC-------CCHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhhcCc-
Q 012539 140 MNKAMDFFWGMKE-------RNVYTWTSVIGGLAMNGA----GEKSLELFSLMKQAGVRPN-E-VTFVSVLRGCCVVGL- 205 (461)
Q Consensus 140 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~- 205 (461)
...|..+|+.|++ ++-..+.+|+.. ...+ .+.+...|+.+.+.|+..+ . .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445666666653 233344444433 2222 3566777888877776664 2 333334433332222
Q ss_pred -HHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 206 -VEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 206 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+..+.++++.+.+. |+++...+|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 44677888887665 88887777665543
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.69 E-value=0.29 Score=28.59 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777788888888888777744
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.65 E-value=4 Score=31.97 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCc
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (461)
.....+....+.|+-++-.++++.+.+. -.|++.....+..||.+.|+..++.+++.++-++ |++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 3455667778888888888888887653 4677777888888999999999998888887664 543
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.61 E-value=6.9 Score=34.56 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=22.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPN---EVTFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
-|.+.|.+..|..-+++|.+. .+-. ...+-.+..+|...|..++|...-.-
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 344555555555555555443 1111 11223334444445555444444443
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=1.4 Score=40.11 Aligned_cols=159 Identities=10% Similarity=0.010 Sum_probs=116.9
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH----HHHHHhcCCH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL----VDLYGRAGRL 242 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 242 (461)
-.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999876 566777777777899999999999999998874 345665444443 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC----CcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK----NHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
++|++.-++. .+.| |...-.+....+...|+..++.++..+-...=.. -...|-...-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 4444 5557777777888999999999887765432111 12356677778888899999999999
Q ss_pred HHHhCCCccCCc
Q 012539 317 IMKAKGVKKLPG 328 (461)
Q Consensus 317 ~m~~~g~~~~~~ 328 (461)
.=.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765544444433
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=9.7 Score=39.34 Aligned_cols=177 Identities=14% Similarity=0.067 Sum_probs=98.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHhC
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTV--TLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMN 168 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 168 (461)
....+....+...++.|..+- ...+.+++. .+.....+-+.+.|++++|...|-+... -++ ..+|.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCH
Confidence 344555555666666665543 233333331 2223334445567888888776655432 111 1234455555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 169 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
.+..+-..+++.+.+.|+.-. ..-..|+.+|.+.++.++-.++.+..- + |.. ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 566666677777777775533 333457778888888877777665442 1 211 11234456667777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 249 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
-.+... +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 666542 333333333 3457777777765543
No 278
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.25 E-value=6.8 Score=33.65 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=26.3
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
.+|.-|..-|...|+.++|..+|+.....++
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 5888999999999999999999998765544
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.17 E-value=5.9 Score=32.74 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+..+++.+...|++-+|+++.+..+ ..+......++.+....+|...-..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677777788888887777653 12223334455555555555554444444443
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.05 E-value=13 Score=40.08 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 210 (461)
++.--+.|-+++|+.++.-=.+.-...|.+-..-+.....+++|.-+|+..-+. ...+.+|...|++.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHH
Confidence 333344555555555543322222334444444555567777777777654321 12456777788888888
Q ss_pred HHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+..
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 87776632 111112333567777777788877777777764
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.04 E-value=5.8 Score=32.38 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=53.1
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKMP-MKPHAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
...++.+++..++..+. -+.|.. ..-..-...+...|++.+|..+|+++. ..|....-.+|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45667777777777764 455642 333333445677888888888888883 2345555566666666555544555
Q ss_pred HHHHHHhhccCC
Q 012539 279 LASRKLVELETK 290 (461)
Q Consensus 279 ~~~~~~~~~~p~ 290 (461)
...+++.+..++
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 555556655543
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.01 E-value=13 Score=36.27 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHH--HHHHHHHHHH
Q 012539 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM--KPHAG--AWGALLNACR 269 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~--~~~~ll~~~~ 269 (461)
..+..++.+.|+.++|.+.++++.++............|+..+...+.+.++..++.+... -|... .|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4466666789999999999999987643333455778899999999999999999988731 24433 5666554444
Q ss_pred hcCCh---------------HHHHHHHHHHhhccCCC
Q 012539 270 MYKNT---------------EMGELASRKLVELETKN 291 (461)
Q Consensus 270 ~~~~~---------------~~a~~~~~~~~~~~p~~ 291 (461)
..++. ..|.++..++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 44331 23456677777777654
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.85 E-value=0.43 Score=27.88 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
+|..|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666666666666666664
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.56 E-value=9.7 Score=35.40 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=23.6
Q ss_pred HcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHH
Q 012539 35 KCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
...+.++|+..|.+...+ -..++..+..+..+.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 355666666666654433 12355566666666676666554
No 285
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.53 E-value=33 Score=40.11 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
.+|-.....++..|.++.|....-.+.+..++ ..+.-.+......|+...|+.++++..+...+
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 37888888899999999999888887777754 57888899999999999999999998866543
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.49 E-value=0.48 Score=27.03 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677778888888888888888887776
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.30 E-value=5.6 Score=33.40 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERN------VYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666666666666666666655431 23455555555556666666655555543
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=1.2 Score=40.24 Aligned_cols=92 Identities=7% Similarity=0.086 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPER---------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 94 (461)
.+...++..-.+..+++.+...+-++... ...+|-.++.-| ++++++.++..=++.|+-||.+++..
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhHHH
Confidence 33444444444455666666655544321 222333333222 55666666666666677777777777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC
Q 012539 95 VLSACTHLGALDQGRWAHVYIERNR 119 (461)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~~ 119 (461)
+++.+.+.+++..|.++.-.|+...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777776666666655543
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.72 E-value=0.44 Score=27.45 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=18.3
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 012539 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 114 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 144 (461)
+.++.. |.+...|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344433 445666666777777777777664
No 290
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.70 E-value=23 Score=36.68 Aligned_cols=301 Identities=7% Similarity=-0.070 Sum_probs=142.7
Q ss_pred ccCCchHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHhhCCC-CC-hhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHEPDV---VCQTAMISACAKCGDVDLARKMFDEMPE-RD-PIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
+.|+...+.++...+..... ..|-.|..... ...+++....+++-+. |- ...-..-+..+.+.+++...+..+.
T Consensus 45 ~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~ 123 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP 123 (644)
T ss_pred HCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC
Confidence 45666666666555532212 22333322211 2246666666666553 21 1122233344445667766665221
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH-----------------
Q 012539 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN----------------- 141 (461)
Q Consensus 79 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----------------- 141 (461)
. .+.+...-.....+....|+.++|......+-..| ...+..++.+.+.+.+.|.+.
T Consensus 124 ~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~ 197 (644)
T PRK11619 124 E-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNT 197 (644)
T ss_pred C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 1 12344444455566666777666655555554444 333445555666555544433
Q ss_pred -HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--hcCcHHHHHHHHHHhhh
Q 012539 142 -KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC--VVGLVEEGREHFDSMRR 218 (461)
Q Consensus 142 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 218 (461)
.|..+...+..........++..+ .+...+..++.. +.|+...-..++.++. ...+.+.|..++.....
T Consensus 198 ~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~ 269 (644)
T PRK11619 198 GLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVR 269 (644)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 333222222111011111111111 112222221111 2223211111222222 23455778888877654
Q ss_pred hcCCccCh--hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 219 EYGIEPWL--EHYGCLVDLYGRAGRLDEALDVINKMP-MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 219 ~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
..++.+.. .....+.......+..++|...++... ...+...+..-+......++.+.+...+..|.........-.
T Consensus 270 ~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 270 AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 43443332 233344333333333566777776652 222444444444455577788777777777654333444556
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHH
Q 012539 296 VLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.=+.+++...|+.++|...|+...
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 667777777888888888888764
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=11 Score=32.87 Aligned_cols=24 Identities=4% Similarity=-0.079 Sum_probs=17.4
Q ss_pred HHhcCChHHHHHHHHHHhhccCCC
Q 012539 268 CRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
-...+++..|+.+|+++.....++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356678889999999887654443
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=2.2 Score=42.03 Aligned_cols=148 Identities=17% Similarity=0.072 Sum_probs=70.9
Q ss_pred cCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012539 5 LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 84 (461)
.|+++.|..++-.+++ ..-+.++..+.++|-.++|+++-- .+| - -.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s~---D~d--~---rFelal~lgrl~iA~~la~e~---- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELST---DPD--Q---RFELALKLGRLDIAFDLAVEA---- 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcCC---Chh--h---hhhhhhhcCcHHHHHHHHHhh----
Confidence 3555555555555442 334556666666777777666521 111 0 011223445555555544332
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012539 85 VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164 (461)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 164 (461)
.+..-|..|..+....+++..|.+.+...... ..|+-.|...|+-+....+-....+. -..|....+
T Consensus 664 --~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N~AF~~ 730 (794)
T KOG0276|consen 664 --NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ--GKNNLAFLA 730 (794)
T ss_pred --cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh--cccchHHHH
Confidence 13445666666666666666666665554332 23444455555544333322222211 011222234
Q ss_pred HHhCCChHHHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSL 180 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~ 180 (461)
|...|+++++++++.+
T Consensus 731 ~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS 746 (794)
T ss_pred HHHcCCHHHHHHHHHh
Confidence 4556666666666654
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.28 E-value=5 Score=33.72 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE--VSMVSVLSACTHLGALDQGRWAHVYIER 117 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (461)
..+..+...|.+.|+.++|++.|.++.+....|.. ..+..++..+.-.+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35667777777788888888877777765444433 3455666666777777777766665554
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.21 E-value=1.2 Score=37.53 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP------HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
-+.+.|++++|..-|... ..-| -.+.|..-..+..+.+..+.|+.-..+.++++|....+..--+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777777666655 1111 123444445567788888999999999999998877777777888888899
Q ss_pred hhHHHHHHHHHHhCC
Q 012539 308 WDRVINVRQIMKAKG 322 (461)
Q Consensus 308 ~~~a~~~~~~m~~~g 322 (461)
+++|+.=|+.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999998888887643
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.13 E-value=0.68 Score=26.33 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+|..+...+...|++++|...|++..++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677777777777777777777763
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.43 E-value=0.93 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
..|..+...|.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777777788888888888777766
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.31 E-value=19 Score=33.82 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC----CcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETK----NHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
....+|..+...+++.|+++.|...+.++....+. .+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34458899999999999999999999999876522 345666678888899999999999988877433
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.98 E-value=3.5 Score=33.62 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=24.3
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhccCCC
Q 012539 238 RAGRLDEALDVINKM-PMKPHAGAWGALLNA-CRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
+.++.+++..++..+ -.+|.......+-.- +...|++.+|.++++.+.+..|..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 344555555555555 223333322222111 345555555555555554444443
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.88 E-value=3.3 Score=33.20 Aligned_cols=53 Identities=8% Similarity=0.003 Sum_probs=33.6
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..++.+++..++..+.-+.|..+..-..-...+...|+|++|.+++++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35666666666666666666666555555666666666666666666665544
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.98 E-value=19 Score=32.09 Aligned_cols=261 Identities=17% Similarity=0.163 Sum_probs=158.5
Q ss_pred CCCCHHHHHHHHHHH-HHcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCC--
Q 012539 19 HEPDVVCQTAMISAC-AKCGDVDLARKMFDEMPER-------DPIAWNAMLAGYAQCGKSREALHLFHLMQI---HDV-- 85 (461)
Q Consensus 19 ~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~-- 85 (461)
.+||+..-|..-.+- .+...+++|+.-|++..+- .-.+.-.+|..+.+.|++++.++.|.+|+- ..+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 457766544332221 2455789999999876532 223556789999999999999999998863 112
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------
Q 012539 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-----RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER------- 153 (461)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 153 (461)
.-+....++++...+...+.+.-...++.-++. +-..--.+-+.|...|...|++.+..++++++.+.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 124456788888777777776666665543321 11112234456888899999999999998887631
Q ss_pred --------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----hcCcHHHHHHHHHHhhhh
Q 012539 154 --------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCC-----VVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 154 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~-----~~g~~~~a~~~~~~~~~~ 219 (461)
-...|..=|..|....+-..-..+|++..... --|.+.. ..+|.-|. +.|.+++|-.=|-+.-+.
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 12567777888888888888888888775422 2344333 34555553 467888775444333343
Q ss_pred cCCc--cC---hhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 220 YGIE--PW---LEHYGCLVDLYGRAGRLDEALDVINK--M-PMK--PHAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 220 ~~~~--p~---~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+.-. |. ---|..|..++.+.|- .-|+. . |.+ |.......|+.+|.. +++.+-++++..-..
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS 331 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc
Confidence 3222 22 2236667777777651 11111 1 333 555677888888754 455555555444333
No 301
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.16 E-value=10 Score=28.10 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
-++|..|-+.+...+-. ...+--.=+..+...|+|++|..+.+.+.-||+..|-+|-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45666666666554421 222222223445678999999999998888999999877553 567677777777777766
Q ss_pred CCCCCHHHHHH
Q 012539 185 GVRPNEVTFVS 195 (461)
Q Consensus 185 g~~p~~~~~~~ 195 (461)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 555555543
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.97 E-value=14 Score=36.87 Aligned_cols=150 Identities=17% Similarity=0.071 Sum_probs=103.6
Q ss_pred HhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
.-.|+++.|..++-.+++ ..-+.++.-+.++|..++|+++- ..|| .-|. ...+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d-~rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPD-QRFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChh-hhhh----hhhhcCcHHHHHHHHH
Confidence 346778888777666663 23445556666777777776532 2233 2232 2346799999988876
Q ss_pred HhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 215 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
+.. +..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+.....+.+..|.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 553 45679999999999999999999998753 355677777788888777777666666655553
Q ss_pred HHHHHHHHhhcCChhHHHHHHHH
Q 012539 295 YVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
-..+|...|+++++.+++.+
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHh
Confidence 34567788999999988864
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.84 E-value=1.7 Score=25.88 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777788888888888887777654
No 304
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.82 E-value=5 Score=29.79 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5666666666677888988899999999999999999999998876544 33336666654
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.56 E-value=6.1 Score=29.01 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466777777777778899999999999999999999999999877644332 3445655543
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.30 E-value=5.2 Score=29.70 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
++.-+-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3333333456688888999999999999999999999888765444333565554
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.12 E-value=13 Score=35.85 Aligned_cols=140 Identities=7% Similarity=0.016 Sum_probs=85.9
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
...|++-.|-+-+...++.+ +.++.+.......+...|.++.+...+... .+.....+...++......|+.++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566666655444444432 334444444555677788898888888776 22345557777888888888899999
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeC
Q 012539 279 LASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG 344 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~ 344 (461)
...+.|...+..++.........--..|-++++...|++....+.+. ...|+..-.....|-.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~--~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET--QSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh--cccceeeeccceeccCc
Confidence 88888886555444443333333445677888888888876654433 33455444333344333
No 308
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.01 E-value=6 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=38.7
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 92 (461)
+.+.+.|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456677788888887777777777777776554 5566666666666666655 4444444
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.72 E-value=5.5 Score=29.24 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 249 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
+-.+..-|++.+..+.+.+|++.+|+..|.++++-+......+...|..++
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 333456688888888889999999999999988887744333333555444
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.95 E-value=0.97 Score=36.39 Aligned_cols=52 Identities=6% Similarity=0.038 Sum_probs=24.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 112 (461)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3444445555555555555554443344555555555555554444444433
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.69 E-value=8.7 Score=32.67 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=9.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A 245 (461)
|+..+.+|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444444
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.51 E-value=11 Score=32.08 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=44.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCChH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-------ERNVYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~ 172 (461)
.+.|+ +.|.+.|-.+...+.-.++....+|...|. ..+.++|..++.... +.|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 455566666666655556666666666555 455666666665443 246667777777777777776
Q ss_pred HHH
Q 012539 173 KSL 175 (461)
Q Consensus 173 ~A~ 175 (461)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
No 313
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.47 E-value=53 Score=33.88 Aligned_cols=89 Identities=11% Similarity=0.174 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC------------hHHHHHHHHHHhh-------ccCCC
Q 012539 233 VDLYGRAGRLDEALDVINKMPMKPHAG--AWGALLNACRMYKN------------TEMGELASRKLVE-------LETKN 291 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~~~------------~~~a~~~~~~~~~-------~~p~~ 291 (461)
..-+...|++++|..+|.-.+ ..|.+ ..|.+++-...... ...|..+.+.... ..+.+
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 334556788899998888876 33322 55555555333322 2334444433332 11223
Q ss_pred cchHHHHHHH-----HhhcCChhHHHHHHHHHHhCCCcc
Q 012539 292 HGAYVLLSNI-----YAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 292 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
..++..|+.. +...|+|++|.+.+++ .++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~---L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEK---LDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---TT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCC
Confidence 3455554443 3588999999877775 44554
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.44 E-value=2.8 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666666554
No 315
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.14 E-value=23 Score=29.35 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 012539 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYSKCGNMNKAMDFFWGMKE 152 (461)
Q Consensus 74 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 152 (461)
++.++.+.+.+++|+...+..+++.+.+.|.+....++ +..++-+| ..+...|+..- +....+.++=-.|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHH
Confidence 34555666677778888888888888877776554333 33333333 33333232221 222333333333333
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
+=...+..++..+...|++-+|+++.+...... .++. ..++.+....++...-..+++-.
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHH
Confidence 333345566677777888888887777642211 1122 33455555555554444444333
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.11 E-value=2 Score=24.25 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777778877777777665
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.10 E-value=58 Score=34.06 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH----HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL----SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
..-+....+...++-|+.+-+. .+ .|..+...+. +-+-+.|++++|...|-+.+.. ++|. .++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3445555666666667665433 22 2333333333 3345677788777766555443 1222 23444
Q ss_pred HHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 210 (461)
|....++.+-..+++.+.+. +...-+.|+.+|.+.++.++-.+..+.-- .|.. ..-+...+..|.+.+-.++|.
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 55555555555555555532 34455677788888887777666655433 2211 111334556666677777776
Q ss_pred HHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012539 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 271 (461)
.+-... +..+ ..+--.+-..|++++|++.++.+|...-..+.+....-+..+
T Consensus 484 ~LA~k~----~~he-----~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h 535 (933)
T KOG2114|consen 484 LLATKF----KKHE-----WVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEH 535 (933)
T ss_pred HHHHHh----ccCH-----HHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 665433 2211 123334566788888888888886432223333333333333
No 318
>PRK09687 putative lyase; Provisional
Probab=83.89 E-value=34 Score=31.20 Aligned_cols=229 Identities=10% Similarity=-0.033 Sum_probs=137.9
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcC
Q 012539 44 KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL----DQGRWAHVYIERNR 119 (461)
Q Consensus 44 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~~ 119 (461)
.+++.+..+|.......+.++...|. .++...+.++.. .+|...-...+.++...|+. +++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 33444456777777778888877775 444455555544 34666666677777777763 4556666555332
Q ss_pred CCCchHHHHHHHHHHHhcCCH-----HHHHHHHHh-cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNM-----NKAMDFFWG-MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 193 (461)
.++..+-...+.+++..+.- ..+...+.. +..++..+-...+.++.+.++ ++|+..+-.+.+ .+|...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHH
Confidence 45666666666666665421 233344433 335566666677777877776 567777777765 3455555
Q ss_pred HHHHHHHhhcC-cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012539 194 VSVLRGCCVVG-LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272 (461)
Q Consensus 194 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~ 272 (461)
...+.++.+.+ ..+.+...+..+.. .++..+-...+.++++.|+..-.-.+++.+. .++ .....+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcC
Confidence 55555666543 23456666655543 3566777778888888888543334444443 333 2345667777777
Q ss_pred ChHHHHHHHHHHhhccCC
Q 012539 273 NTEMGELASRKLVELETK 290 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~ 290 (461)
+. +|...+..+.+..|+
T Consensus 250 ~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred CH-hHHHHHHHHHhhCCC
Confidence 74 677777777776663
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.75 E-value=2.6 Score=38.64 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~ 274 (461)
+-|.++|.+++|++.|.... .+.| ++.++..-..+|.+..++..|+.-.... .+. .-...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45888999999999998765 4566 8888888899999999988777655443 111 1122566666666677889
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
.+|.+-++.+++++|.+.. |-..|.+.....++
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 9999999999999998643 33344444444443
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.69 E-value=47 Score=32.67 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 204 (461)
.-+++..++..-.++-.+.+-.+|.. .+-..|..++.+|..+ ..++-..+++++.+. .-|...+.--+.-+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHh
Confidence 33455555555555555555555542 3445555566666555 444555555555553 223333332222233335
Q ss_pred cHHHHHHHHHHhhhhcCCccC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCh
Q 012539 205 LVEEGREHFDSMRREYGIEPW------LEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
+.+.+..+|..+.. .+-|. .+.|..|+... ..+.+..+.+..++ +...-.+.+.-+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 55555555555543 22221 12233332211 12333334433333 2222233333344445555566
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
.+|++++..+.+.+..|..+-..++.
T Consensus 222 ~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 222 TEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 66666666555555554444333333
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.20 E-value=36 Score=30.98 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=11.1
Q ss_pred HHhhcCChhHHHHHHHH
Q 012539 301 IYAESKNWDRVINVRQI 317 (461)
Q Consensus 301 ~~~~~g~~~~a~~~~~~ 317 (461)
.+.+.++|++|.+.++.
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34566777777777664
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.08 E-value=0.46 Score=38.32 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 96 LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 148 (461)
+..+.+.+.......+++.+.+.+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555566666655444555666666666666655555555554
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.06 E-value=28 Score=29.54 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=52.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH--HHHHHHHHHhCCChH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT--WTSVIGGLAMNGAGE 172 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 172 (461)
..+...+++++|...+.+......+.+ ..+--.|.......|.+|+|+..++....++-.+ ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 445666777777777766654321111 1122235556666777777777777766654333 333345567777777
Q ss_pred HHHHHHHHHHHcC
Q 012539 173 KSLELFSLMKQAG 185 (461)
Q Consensus 173 ~A~~~~~~m~~~g 185 (461)
+|..-|.+....+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777776654
No 324
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.01 E-value=49 Score=32.41 Aligned_cols=239 Identities=8% Similarity=-0.038 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC------CHHHHHHHHHHHHHcC-C-CCchHHHHHHHHHHHhcCCHHH-
Q 012539 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLG------ALDQGRWAHVYIERNR-L-KMTVTLGTALVDMYSKCGNMNK- 142 (461)
Q Consensus 72 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~- 142 (461)
...++|++..+ ..|+...|...|..|...- .+.....+++.....+ . +.....|..+.-++.+...-.+
T Consensus 300 ~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 34456666655 3456667777777664432 2333444444444322 2 2234556666666666554433
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhC-CChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc-HHHH-H-HHHHHhh
Q 012539 143 AMDFFWGMKERNVYTWTSVIGGLAMN-GAGE-KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL-VEEG-R-EHFDSMR 217 (461)
Q Consensus 143 A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a-~-~~~~~~~ 217 (461)
|..+-.+....+...|-.-++..... .+++ .-.++|......-..+-...+++.. .++ .+.. . .++...
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~- 451 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL- 451 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH-
Confidence 44444455566777776666655432 1222 1222333333322222333333332 111 1111 1 112222
Q ss_pred hhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhccCCCc
Q 012539 218 REYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMP-M-KPHAGAWGALLNA--CRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 218 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.. -..|+ ...-+.+++.+-+.|-..+|...+..+. . .|+...+..++.. -...-+...+..+|+.+....-.++
T Consensus 452 ~s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 452 LS-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred HH-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 11 22333 3445667788888888899998888872 1 3566778777765 2233347777788888775444666
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
..|......-...|..+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 777777666667777777666655443
No 325
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.79 E-value=9.2 Score=32.45 Aligned_cols=57 Identities=9% Similarity=-0.076 Sum_probs=27.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012539 62 AGYAQCGKSREALHLFHLMQIHDVKLN-----EVSMVSVLSACTHLGALDQGRWAHVYIERNR 119 (461)
Q Consensus 62 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 119 (461)
+-+..+|++++|..-|.+.+.. +++. ...|..-..+..+++.++.|..-....+..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 3445566666666666666553 1111 1223333344455555555555555554443
No 326
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.43 E-value=80 Score=34.40 Aligned_cols=254 Identities=7% Similarity=-0.075 Sum_probs=115.3
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 012539 44 KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123 (461)
Q Consensus 44 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 123 (461)
.+.+.+..+|+..--..+..+.+.+.. +++..+.++.. .+|...-...+.++...+........+..+++. ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 444445566666666666666666543 34444444443 234333334444444332211111222233322 44
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
..+-...++.+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 455445555555433211 2234445556666665666666665544322 11221 234544445555555555
Q ss_pred CcHHH-HHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 204 GLVEE-GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 204 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+-..++..+=...+.++...+.. ++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 44322 2333333332 3456666667777777776544433333332244544445555555555543 2333333
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.+.+ + ++...-...+.++.+.+.-..+...+....
T Consensus 845 ~~L~-D-~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-D-PHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-C-CCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3321 1 122344444555544322334444444443
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.94 E-value=59 Score=32.56 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
++..+|..-+..-.+.|+++.+.-+|++..-|- ...|--.+.-.-..|+.+-|..++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 356788888888888999999998888876551 23444444444455887777777666555433323333222223
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH---HHHHhcCC--CCHHHHHHHHHH-----HHh
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM---DFFWGMKE--RNVYTWTSVIGG-----LAM 167 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~ 167 (461)
.+-..|+++.|..+++.+...- +.-+.+-..-+.+-.+.|+.+.+. .++....+ .+....+.+.-- +.-
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 3445678888888888887764 333333334456666777777776 33333221 122222222211 223
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
.++.+.|..++.++.+. ++++...|..++..+.
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 45666777777776664 4445555555555443
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.53 E-value=3 Score=23.17 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=12.8
Q ss_pred HHHhcCChHHHHHHHHHHhhccCC
Q 012539 267 ACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
++...|+.++|...++++++..|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555555555555555553
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.52 E-value=69 Score=33.06 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCcCHH-----HHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA-QCGKSREALHLFHLMQIHDVKLNEV-----SMVS 94 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~-----t~~~ 94 (461)
.+...|..||..-.+| ++.+.+=+.--+..+..++--+...+. ...++++|...+.+....--+++.. .-..
T Consensus 28 ~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l 105 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFL 105 (608)
T ss_pred hhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4566787787765443 222222111111124556777777776 5678888888888765432222222 2223
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC----CCCchHHHHHH-HHHHHhcCCHHHHHHHHHhcCC-------CCHHHHHHHH
Q 012539 95 VLSACTHLGALDQGRWAHVYIERNR----LKMTVTLGTAL-VDMYSKCGNMNKAMDFFWGMKE-------RNVYTWTSVI 162 (461)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li 162 (461)
++..+.+.+... |....+..++.- ..+-...+.-+ +..+...++...|.+.++.+.. +-+..+-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 445555555544 777777766432 12223333333 3333334788888888877652 2233344444
Q ss_pred HHH--HhCCChHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHh--hcCcHHHHHHHHHHh
Q 012539 163 GGL--AMNGAGEKSLELFSLMKQAGV---------RPNEVTFVSVLRGCC--VVGLVEEGREHFDSM 216 (461)
Q Consensus 163 ~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~ 216 (461)
.+. .+.+..+++++.++++..... .|-..+|..++..++ ..|+++.+...++.+
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 345667778777777743221 234556666666554 467766665554443
No 330
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.50 E-value=36 Score=29.81 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=35.4
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH--H-HhcCChHHHHHHHHHHhhccCCC
Q 012539 235 LYGRAGRLDEALDVINKM---PMKPHAGAWG---ALLNA--C-RMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~---~ll~~--~-~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.-+..+++.+|.++|++. ....+..-|. -++.+ | .-..+.-.+...+++..+++|.-
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 345678888999998887 2222222232 22332 2 22367777888888999999873
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.44 E-value=5.5 Score=36.57 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=59.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc-
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA- 239 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~- 239 (461)
..-|.++|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|+.=....+. .-...+.+|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4569999999999999998776 566 889999889999999988877765554432 112345556555
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH
Q 012539 240 ------GRLDEALDVINKM-PMKPHA 258 (461)
Q Consensus 240 ------g~~~~A~~~~~~~-~~~p~~ 258 (461)
|...+|.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555444443 455663
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.38 E-value=12 Score=24.16 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 012539 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370 (461)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 370 (461)
...++.++.+.|++++|.+..+.+.+. .|...++...-..+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999988762 34555666666666677777663
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.10 E-value=2.3 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhcCChhHHHHHHH
Q 012539 294 AYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667778888888888887765
No 334
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.69 E-value=20 Score=32.81 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=64.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-R--------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 119 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
|.+....+...++..-....+++.+...+-.+.. + ...+|--++. .-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4444455555566655666777777776655542 2 2334433332 3456788888888888888899
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
.+++..+++.+.+.++..+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999988888888888777666554
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.25 E-value=3.8 Score=21.71 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~ 148 (461)
.+...+...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 35556666666666666554
No 336
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.57 E-value=66 Score=31.60 Aligned_cols=237 Identities=10% Similarity=0.106 Sum_probs=131.6
Q ss_pred HHHHHHhhCCCC--ChhHHHHHHHHHHHcC------ChHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHHhccCCHHHHHH
Q 012539 41 LARKMFDEMPER--DPIAWNAMLAGYAQCG------KSREALHLFHLMQIH-DVKLN-EVSMVSVLSACTHLGALDQGRW 110 (461)
Q Consensus 41 ~A~~~~~~m~~~--~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~-~~~p~-~~t~~~ll~~~~~~~~~~~a~~ 110 (461)
....+|+...++ ....|+.-|..|...- .....+.+|+...+. +..++ ...|..+...+.......++
T Consensus 300 ~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~-- 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV-- 377 (568)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH--
Confidence 334667665543 4556766666654432 234445556555443 23443 34565555555555443222
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh----cC----CCCHHHHHHHHHHHHhCCC-hH-HHHHHHHH
Q 012539 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG----MK----ERNVYTWTSVIGGLAMNGA-GE-KSLELFSL 180 (461)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~----~~~~~~~~~li~~~~~~g~-~~-~A~~~~~~ 180 (461)
-..+...++..+...|-.-+........ ++.-+|.+ .. .+-...|++.. .|+ .. ..+.++-.
T Consensus 378 -a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 378 -AVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred -HHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 2222222334455555443333332211 23333333 22 23445566555 222 11 12222222
Q ss_pred HHHcCCCCCHHHHH-HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHH---hcCCHHHHHHHHHhC--CC
Q 012539 181 MKQAGVRPNEVTFV-SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG---RAGRLDEALDVINKM--PM 254 (461)
Q Consensus 181 m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~~--~~ 254 (461)
....-..|+..|+. .++..+.+.+-..+|+..+..+.. --+|+...|..+|..=. .+| +..+..+++.+ ..
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREF 526 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHh
Confidence 22222466666654 567777788999999999998864 34557788888887533 344 77777888877 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-ccCC
Q 012539 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVE-LETK 290 (461)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~ 290 (461)
-.|+..|...+.--..+|..+.+-.++.++.+ ++|.
T Consensus 527 g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 527 GADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred CCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 36888898888888899999998888877664 4554
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.17 E-value=36 Score=28.33 Aligned_cols=130 Identities=11% Similarity=0.040 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHhcCCHHHHHHHHHhcCCC--CHHHHHH---H-
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTL-GTALVDMYSKCGNMNKAMDFFWGMKER--NVYTWTS---V- 161 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~---l- 161 (461)
..+|...|.. ++.+..++|..-|..+.+.|...-+.. ...........|+...|...|+++-.. -+....- |
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3445444443 456777888999999988776544332 223445567889999999999988642 1111111 1
Q ss_pred -HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 162 -IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 162 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
.-.+..+|.+++.....+-+...+-+--...-..|.-+-.+.|++..|...|..+..+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1235568888888888877765554444555566777777899999999999988765
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.09 E-value=24 Score=29.44 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 274 TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
++.|...|+++...+|.+. .|..-+.+.. +|-+++.++.+++...
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 5678888888889999985 7776666553 5888888888887643
No 339
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.09 E-value=25 Score=26.49 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
..++|..|.+.+...+. ....+--.-+..+...|+|++|...=.....||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46777777777777653 223333333445667788888854444455678887776644 466777777777776655
Q ss_pred cCCCCCHHHH
Q 012539 184 AGVRPNEVTF 193 (461)
Q Consensus 184 ~g~~p~~~~~ 193 (461)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 44 3434444
No 340
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=78.83 E-value=54 Score=30.20 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh--c----CcHHHHHHHHHHhhhhcCC
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV--V----GLVEEGREHFDSMRREYGI 222 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~ 222 (461)
+++.+.+++.|.+.|.+-+..+|.+....... . -....+..+|+.|.+.+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 35667788889999888888777653332222 2 2355688899999877554
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.74 E-value=8.1 Score=34.77 Aligned_cols=56 Identities=9% Similarity=-0.096 Sum_probs=50.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
...|...|.+.+|.++.++++.++|-+...+..|++.++..|+--.|.+-++++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34588999999999999999999999999999999999999998888888887754
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.44 E-value=41 Score=28.58 Aligned_cols=127 Identities=11% Similarity=0.067 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHH----
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV--SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG---- 230 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---- 230 (461)
.|..++.... .+.+ +.....+++.........-++. .+...+...+++++|...++..... +.| ..+.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHH
Confidence 3444444433 3333 5555666665542222222222 2345567788899998888876532 222 2222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 231 -CLVDLYGRAGRLDEALDVINKMPMKPHAGA--WGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 231 -~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
.|.......|.+|+|+.+++... .++-.. ...-...+...|+.++|...|++..+.++.
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 34556778899999999988763 222222 222234488999999999999999888744
No 343
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.27 E-value=44 Score=28.92 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCchHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVD 132 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~ 132 (461)
+..||-|.--+...|+++.|.+.|+...+.+..-+-...| -.-++--.|++..|.+-+.+.-+.. -.|-...|.-|+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5678888888888899999999998888765332322332 2233344677777776665555443 1233333332322
Q ss_pred HHHhcCCHHHHHH-HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhhcC
Q 012539 133 MYSKCGNMNKAMD-FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-------EVTFVSVLRGCCVVG 204 (461)
Q Consensus 133 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g 204 (461)
..-+..+|.. +.++....|-.-|..-|-.|.-..-.+ ..+++++... -.-+ ..||.-|..-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2234445543 444555566666666555543322211 2233333331 1111 346778888888899
Q ss_pred cHHHHHHHHHHhhh
Q 012539 205 LVEEGREHFDSMRR 218 (461)
Q Consensus 205 ~~~~a~~~~~~~~~ 218 (461)
++++|..+|+..+.
T Consensus 252 ~~~~A~~LfKLaia 265 (297)
T COG4785 252 DLDEATALFKLAVA 265 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987765
No 344
>PRK12798 chemotaxis protein; Reviewed
Probab=78.02 E-value=67 Score=30.83 Aligned_cols=180 Identities=14% Similarity=0.212 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHhcCC----CCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCcHH
Q 012539 137 CGNMNKAMDFFWGMKE----RNVYTWTSVIGGL-AMNGAGEKSLELFSLMKQAGVRPNE----VTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 207 (461)
.|+.++|.+.+..+.. +.+..+-+|+.+- ....++.+|+++|++..- ..|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 7999999999998874 3456677777664 445679999999999865 34542 23333445567889999
Q ss_pred HHHHHHHHhhhhcCCccChhHH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 208 EGREHFDSMRREYGIEPWLEHY-GCLVDLYGRA---GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
++..+-.....++.-.|-..-| ..++..+.+. -..+.-..++..|.-..-...|..+-..-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888877777766666643322 2233333333 34555566667664233345888888889999999999999999
Q ss_pred HhhccCCCcchHHHHHHHHh-----hcCChhHHHHHHHHHH
Q 012539 284 LVELETKNHGAYVLLSNIYA-----ESKNWDRVINVRQIMK 319 (461)
Q Consensus 284 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~ 319 (461)
+..+...+ ..-...+..|. -..+++++.+.+..+-
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 98876332 22233333332 2344666666665543
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.96 E-value=4.9 Score=21.36 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=10.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcc
Q 012539 265 LNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
...+...++++.|...++...+..
T Consensus 8 a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHHHccC
Confidence 333444444444444444444333
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.70 E-value=36 Score=27.51 Aligned_cols=65 Identities=22% Similarity=0.145 Sum_probs=37.7
Q ss_pred hcCcHHHHHHHHHHhhhhcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKMPMKP-HAGAWGALLNACR 269 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 269 (461)
..++.+++..++..|. -+.|+. ..-..-.-.+...|++++|.++|++....+ ....-..|+..|.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3677777777777764 445542 222233445677888888888888884333 3333334444343
No 347
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.85 E-value=1.1e+02 Score=32.49 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=43.9
Q ss_pred ccccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|...|+++.|.+.-+.-++.=..++-.-.+.|.+.+++..|-+++.++ ..++..+.--|....+.+ ++..|
T Consensus 368 yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 368 YLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHH
Confidence 566777888877765542212234555556777888888888888877 334555555555555555 44444
No 348
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.76 E-value=9.9 Score=24.53 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=24.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCcc
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
+.-++.+.|+++.|.+..+.+.+.+|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 445688999999999999999999999863
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.20 E-value=3.8 Score=22.74 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 294 AYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998764
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.03 E-value=13 Score=32.02 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc---chHHHHHHH
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKNH---GAYVLLSNI 301 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~ 301 (461)
...-++.+.+.+++++|+...++- ..+|.. ..-..++..++..|++++|..-++-.-++.|... ..|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566778888899988877554 556644 4666677789999999999988888888888753 355555543
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.92 E-value=21 Score=34.62 Aligned_cols=121 Identities=13% Similarity=0.156 Sum_probs=80.8
Q ss_pred hCCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHH
Q 012539 167 MNGAGEKSL-ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 167 ~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
..|+.-.|- +++..+....-.|+.+...+.| ..+.|+++.+.+.+....+ -+.....+-.+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 456655554 4555555555566665554444 5678999999998887754 3344566778888888999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 246 LDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 246 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
..+-..| +.+ .++.+...........|-++++...++++..+.|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9888777 211 233333333334566777889999999988887663
No 352
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.15 E-value=9.1 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChH
Q 012539 36 CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 71 (461)
.|+.+.|..+++.++ +.+..|...+.++-..|.-.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 344555555555554 44444445555444444433
No 353
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.60 E-value=25 Score=27.79 Aligned_cols=48 Identities=8% Similarity=0.114 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHhh-ccCCCc-chHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 273 NTEMGELASRKLVE-LETKNH-GAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 273 ~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+..+.+.+++.+.+ -.|... .....|.-++.+.++++.+.++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34455555555554 222221 1223344555666666666666655543
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.24 E-value=54 Score=29.57 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=38.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK---- 136 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 136 (461)
|.+++..+++.+++...-+--+.--+.-......-|-.|.+.+....+.++-....+..-.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4566666666666654433322111111222223333445555555555555444432222222334445444443
Q ss_pred -cCCHHHHHHHH
Q 012539 137 -CGNMNKAMDFF 147 (461)
Q Consensus 137 -~g~~~~A~~~~ 147 (461)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555554444
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.20 E-value=54 Score=27.46 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhc
Q 012539 173 KSLELFSLMKQAGVRPN-EVTFVSVLRGCCVV 203 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 203 (461)
+|+.-|++... +.|+ ..++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 44444555544 4565 35555566555543
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.97 E-value=10 Score=23.34 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=15.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 357
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=72.22 E-value=52 Score=27.85 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC--------------CCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRL--------------KMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
.+++..|.+..++.+++++++.+-+..+ .+.-++.|.....+.++|.+|.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 3566677788888888888887765432 233456667777788888888887777743
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.78 E-value=11 Score=32.88 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
.+.+.++++.+..--++.+++.|+.......|.........+++|+..+.+.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3444445555555555555555555445555555555555555555555444
No 359
>PRK10941 hypothetical protein; Provisional
Probab=71.46 E-value=21 Score=32.29 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..+.+-.+|.+.++++.|.++.+.+..+.|+++.-+.--.-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556667899999999999999999999999888888888899999999999988877664
No 360
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.38 E-value=45 Score=34.41 Aligned_cols=31 Identities=39% Similarity=0.671 Sum_probs=19.5
Q ss_pred hhHHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 012539 226 LEHYGCLVDL-----YGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 226 ~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~p 256 (461)
..++..|.+. +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 3445444443 457889999999999997777
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.58 E-value=11 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=11.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.95 E-value=13 Score=26.27 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=23.5
Q ss_pred hcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
+....++|...+...+++..-.|+ -.+...|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555543222222 23455555666666666555543
No 363
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.85 E-value=1e+02 Score=29.65 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=37.8
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--hcCcHHHHHHHHHHhhh
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPNEV--TFVSVLRGCC--VVGLVEEGREHFDSMRR 218 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 218 (461)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344788899999999998876 555544 3444445554 36778888888887765
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.88 E-value=54 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477778888888888888888887765
No 365
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.13 E-value=99 Score=32.08 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH----------HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV----------SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT 125 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 125 (461)
+-..|+-.|....+++..+++.+.++. -||.. .|...++-=-+-|+-++|..+.--+++..-+..+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 444555566666667777776666655 23221 1222333333445555555555444432212111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT---FVSVLRGCCV 202 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~ 202 (461)
++|+-||++ |+.|- +-+.|-..+..+.|++.|++.-+ +.|+..+ +..|+.+-.+
T Consensus 279 ------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 279 ------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred ------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 123334432 12111 11223344455677777777665 5665433 3344433222
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
. ++...++- . .-..|-..+++.|.+++-...++-. ..+.+-.-.+++..|.++.+
T Consensus 336 ~--Fens~Elq----~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 H--FENSLELQ----Q---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred h--ccchHHHH----H---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHH
Confidence 1 11111110 0 1112334557777777666655432 12334445677888888888
Q ss_pred HHhhccCCC
Q 012539 283 KLVELETKN 291 (461)
Q Consensus 283 ~~~~~~p~~ 291 (461)
.|.++.|+.
T Consensus 391 ~mfKLk~P~ 399 (1226)
T KOG4279|consen 391 MMFKLKPPV 399 (1226)
T ss_pred HHhccCCce
Confidence 888887774
No 366
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.11 E-value=51 Score=26.55 Aligned_cols=76 Identities=9% Similarity=0.240 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCcCHHHHHHH
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPE---------RDPIAWNAMLAGYAQCGK-SREALHLFHLMQIHDVKLNEVSMVSV 95 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~l 95 (461)
.|.++.-.+..+++...+.+++.+.. .+-.+|++++.+..+... --.+..+|.-|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44444444555555555555554421 133455555555544443 23345555555555555555555555
Q ss_pred HHHHhc
Q 012539 96 LSACTH 101 (461)
Q Consensus 96 l~~~~~ 101 (461)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555543
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.10 E-value=62 Score=31.37 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=38.4
Q ss_pred ccCCchHHHHHHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHcCChHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHEPDVVC--QTAMISACAKCGDVDLARKMFDEMPERDP---IAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
+.|+++-+..+++.+..++... ..+.+...++.|+.+-+..+++.-..++. ... +.+...+..|+.+.+..++
T Consensus 11 ~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 11 LFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHHHHHH
Confidence 4566777777777666554322 23344555567777766666654332221 122 2334445666665554444
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.93 E-value=69 Score=25.80 Aligned_cols=50 Identities=12% Similarity=0.253 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 154 NVYTWTSVIGGLAMNGA-GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
+..+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34456666666654444 334556666666655666666666666665543
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.88 E-value=1.5e+02 Score=29.50 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
..-+++..+.++..+.-...+..+|..-| -+...|..++..|... .-+.--.+++++.+..+. |+..-..|+..|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34455555555555555555666665533 3445555555555555 334444555555554432 2222233444444
Q ss_pred hcCCHHHHHHHHHhcC
Q 012539 136 KCGNMNKAMDFFWGMK 151 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~ 151 (461)
+ ++.+.+...|..+.
T Consensus 144 k-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 144 K-IKKSKAAEFFGKAL 158 (711)
T ss_pred H-hchhhHHHHHHHHH
Confidence 3 55555555555443
No 370
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=64.85 E-value=1.1e+02 Score=30.45 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC--CH---HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKER--NV---YTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
.|+.-|.+.+++++|..++..|.=. .. .+.+.+.+.+.+..-.++....++.+.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4777899999999999999888621 12 233333444444443444444444443
No 371
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.62 E-value=55 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 27 TAMISACAKCGDVDLARKMFDEMPE----------RDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 27 ~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
++|+.+|... +......++..--. ....-|..|+..|...|..++|++++.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566677666 55555555442110 0223588899999999999999999988876
No 372
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.52 E-value=1.1e+02 Score=27.78 Aligned_cols=111 Identities=13% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHh-----hCCCCChhHHHHHHHHHHH-cCChHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHhccCCHHHHHH
Q 012539 39 VDLARKMFD-----EMPERDPIAWNAMLAGYAQ-CGKSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLGALDQGRW 110 (461)
Q Consensus 39 ~~~A~~~~~-----~m~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~ 110 (461)
+-+|+++|+ +-.-.|...-..|++.... .+.--.|+--+-...... -.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 111 AHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149 (461)
Q Consensus 111 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 149 (461)
++...... +...|...|..+++.-.+.|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 373
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.81 E-value=5.7 Score=36.53 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
+.+.++...|++-+....+++|+....|-.-..+..-.|+|++|...+....+.++.
T Consensus 158 ~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 158 FLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred eeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 444455555555555555555555555554444555555555555555555555443
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.13 E-value=95 Score=28.10 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=40.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh-
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQ--AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR- 238 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 238 (461)
|.+++..+++.+++...-+--+ ..++|. ....-|-.|++.+....+.++-..-... .-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 4455555555555544333222 112332 2222333456666666655555544432 111122336665555543
Q ss_pred ----cCCHHHHHHHHH
Q 012539 239 ----AGRLDEALDVIN 250 (461)
Q Consensus 239 ----~g~~~~A~~~~~ 250 (461)
.|.+++|+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 477777777663
No 375
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.83 E-value=1.8e+02 Score=29.59 Aligned_cols=271 Identities=11% Similarity=0.041 Sum_probs=135.8
Q ss_pred HHHHHHHHhhCCCC-ChhHHHHHHHH-----HHHcCChHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHhccC--
Q 012539 39 VDLARKMFDEMPER-DPIAWNAMLAG-----YAQCGKSREALHLFHLMQI-------HDVKLNEVSMVSVLSACTHLG-- 103 (461)
Q Consensus 39 ~~~A~~~~~~m~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~-- 103 (461)
...|...++...+. ++..-..+... +....+.+.|+..|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766543 34433333322 3455678888888887766 44 3334555556665532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc---CCHHHHHHHHHhcCCC-CHHHHHHHHHHHH----hCCChH
Q 012539 104 ---ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC---GNMNKAMDFFWGMKER-NVYTWTSVIGGLA----MNGAGE 172 (461)
Q Consensus 104 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~ 172 (461)
+.+.|..++.+..+.| .|+.... |..+|..- .+...|.++|...-.. .+.+.-.+..+|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 5667888888888777 3444433 33333332 3567788888766543 3333333333332 234677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHH---Hh----cCCHHHH
Q 012539 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY---GR----AGRLDEA 245 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A 245 (461)
.|..++.+..+.| .|...--...+..+.. +..+.+...+..+.. .|.+-....-..+.+.. .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8888888887776 3332222233333443 555555555444432 23221111111111111 00 1244455
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc---CChhHHHHHHHHH
Q 012539 246 LDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVLLSNIYAES---KNWDRVINVRQIM 318 (461)
Q Consensus 246 ~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m 318 (461)
...+......-+......|-..|.. ..+++.+...+.+..... ......|..++... ..+..|.++++..
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 5555555333444444444443222 224566666666655444 33444455554322 1156666666666
Q ss_pred HhC
Q 012539 319 KAK 321 (461)
Q Consensus 319 ~~~ 321 (461)
.+.
T Consensus 536 ~~~ 538 (552)
T KOG1550|consen 536 SEE 538 (552)
T ss_pred Hhc
Confidence 543
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.46 E-value=51 Score=25.76 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH
Q 012539 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 233 (461)
+..+-++.+....+.|+......-+.+|.+.+++..|.++|+.++.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 55566666777778999999999999999999999999999988654 334344565554
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.39 E-value=28 Score=31.54 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHH
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-----AGVRPNEVT 192 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 192 (461)
+.+.....|..+|.+.+|.++-+.... -+...|-.++..++..|+--.|.+-++++.+ .|+..|...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 445567788899999999998887774 3567888899999999998888888887743 455555433
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.79 E-value=15 Score=20.02 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 272 KNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 272 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
|+.+.+..+|+++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877777666665543
No 379
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.50 E-value=1e+02 Score=26.20 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhc-------------CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREY-------------GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+++..|-+.-++.+++.+++.+-+-. +..+.-...+.-...+.+.|.+|.|..++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 45666777788888888887765410 11233345566677778888888888877765
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.62 E-value=2.1e+02 Score=29.57 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=114.1
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCcC--HHHHHHHHHHH-hccCCHHHHHHHHHHHHHcCCCCch---
Q 012539 52 RDPIAWNAMLAGYAQCGKSREALHLFHLMQ-IHDVKLN--EVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTV--- 124 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~--~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~--- 124 (461)
.++..|..||.. |+..++-+. +..+.|. ..++..+...+ ..+.+++.|+..+.+.....-.++.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 366788888875 566666666 3334443 23555556655 4788999999999987654433322
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CH----HHHHHH-HHHHHhCCChHHHHHHHHHHHHcC---CCCCH
Q 012539 125 --TLGTALVDMYSKCGNMNKAMDFFWGMKER----NV----YTWTSV-IGGLAMNGAGEKSLELFSLMKQAG---VRPNE 190 (461)
Q Consensus 125 --~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~ 190 (461)
.....++..|.+.+... |....++..+. .. ..+..+ +..+...+++..|++.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12345677888877766 88877765421 11 233333 333334479999999999986532 23444
Q ss_pred HHHHHHHHHHhh--cCcHHHHHHHHHHhhhhc-CC-------ccChhHHHHHHHHH--HhcCCHHHHHHHHHhC
Q 012539 191 VTFVSVLRGCCV--VGLVEEGREHFDSMRREY-GI-------EPWLEHYGCLVDLY--GRAGRLDEALDVINKM 252 (461)
Q Consensus 191 ~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~-~~-------~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 252 (461)
..+..++.+... .+..+++.+..+.+.... ++ .|...++..+++.+ ...|+++.+...++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555566665554 455666766666653210 11 23456677777755 4567766666554443
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.59 E-value=36 Score=24.08 Aligned_cols=47 Identities=6% Similarity=-0.056 Sum_probs=30.1
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHF 213 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 213 (461)
...+.++|+..|+...+.-..|. -.++..++.+++..|++++++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766433332 335566777777788777766543
No 382
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.43 E-value=24 Score=25.76 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 279 LASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..++...+.+|+|...-..+...+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555667777777777888888888888888777776554
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.63 E-value=35 Score=29.03 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
.|++.++..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 384
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.58 E-value=51 Score=25.72 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 244 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
+++.-+-.+.+-|++.+..+-+.+|++-+|+..|.++++-+...-++....|-.++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33443444466788999999999999999999999999988765444333454443
No 385
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.41 E-value=1.3e+02 Score=27.66 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh----------cCCHHH
Q 012539 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR----------AGRLDE 244 (461)
Q Consensus 175 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 244 (461)
.++++.|.+.++.|.-..|..+.-.+++.=.+.+...+++.+..+ +.-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 456777777788888888877777777777788888888877642 2234455544443 377777
Q ss_pred HHHHHHhCC
Q 012539 245 ALDVINKMP 253 (461)
Q Consensus 245 A~~~~~~~~ 253 (461)
..++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777654
No 386
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.35 E-value=2.1e+02 Score=29.16 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhhcC--
Q 012539 140 MNKAMDFFWGMKER-NVYTWTSVIGG-----LAMNGAGEKSLELFSLMKQ-------AGVRPNEVTFVSVLRGCCVVG-- 204 (461)
Q Consensus 140 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g-- 204 (461)
...|.+.++..... ++..-..+... +....+.+.|+..|+.+.. .|. ......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 45677777766543 44444444333 3445678888888888866 442 223445555665532
Q ss_pred ---cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCh
Q 012539 205 ---LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR---AGRLDEALDVINKMPMKPHAGAWGALLNAC----RMYKNT 274 (461)
Q Consensus 205 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~ 274 (461)
+.+.|..++...... | .|+.... +...|.. ..+...|.++|......-.....-.+...| ....+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 567788888776542 3 2333322 3333322 235678888888874333333333332222 233478
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
+.|...+.++-+.++.....-......+.. ++++.+.-.+..+.+.|...
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 888888888888774332222223333334 88888888888888777653
No 387
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.92 E-value=68 Score=24.27 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=20.2
Q ss_pred HHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 32 ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 32 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
.+.+.|++++|+..=.....||...|-+|-.. +.|-.+++...+.++-..
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT-
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34455555555333333334455555444332 444444444444444433
No 388
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=58.23 E-value=18 Score=25.94 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=26.0
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREA 73 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 73 (461)
..-+...+.+.|.++++.++.+...+|.....+.-..|...-|
T Consensus 38 ~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 38 EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3344445566666677666666666666666666666554433
No 389
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.60 E-value=1.6e+02 Score=27.23 Aligned_cols=84 Identities=15% Similarity=-0.052 Sum_probs=56.3
Q ss_pred CcHHHHHHHHHHhhhhcCC---ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 204 GLVEEGREHFDSMRREYGI---EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
.-.++|.+.|........- ..++.....+.....+.|..+.-..+++.....++...-..++.+.....+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3456788888887653111 3355666677777778888766666666655456777888899998888899998999
Q ss_pred HHHHhhc
Q 012539 281 SRKLVEL 287 (461)
Q Consensus 281 ~~~~~~~ 287 (461)
++.+...
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9998874
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.23 E-value=1.5e+02 Score=26.91 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHhccCCHHHHHHHHHH----HHHcCCCCchHHHH
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIHDVKLNE-------VSMVSVLSACTHLGALDQGRWAHVY----IERNRLKMTVTLGT 128 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~ 128 (461)
+.+-.++.+++++|+..+.+....|+..|. .+...+...|...|+...-.+.... |..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHh-cCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 129 ALVDMYSK-CGNMNKAMDFFWGMKER---------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 129 ~li~~~~~-~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+|++.+.. ...++.-+.+.....+- -...=.-+|..+.+.|++.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 391
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.50 E-value=1.5e+02 Score=26.45 Aligned_cols=203 Identities=13% Similarity=0.049 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.|.--..+|-...++++|...+.+..+- ...+...|. . ...++.|.-+.+++.+. +.-+..++.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555566777777888887777666531 121222221 1 22334444444444442 233456667777888
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--CCH---HHHHHHHHHHhhcCcHHHHH
Q 012539 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR--PNE---VTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~---~~~~~ll~~~~~~g~~~~a~ 210 (461)
.+|..+.|-..+++.-+ ...+-++++|+++|++...--.. -+. ..+..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 88888777655554311 12344566666666665432000 011 11223333445556666655
Q ss_pred HHHHHhhh---hcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 211 EHFDSMRR---EYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKM---PM---KPHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 211 ~~~~~~~~---~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~---~~---~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
..+.+-.. ...--++. ..|...|-.|.-..++..|...+++- |. .-+..+...||.+| ..|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 44432210 01112222 34556666777788999999999883 21 12455788888876 45777777665
Q ss_pred H
Q 012539 281 S 281 (461)
Q Consensus 281 ~ 281 (461)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.41 E-value=74 Score=23.02 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=26.7
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 012539 136 KCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
..|+.+.|+++++.++ +....|...++++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 66777777777777766655443
No 393
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.09 E-value=48 Score=20.76 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=21.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 64 YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 64 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777776666666655554
No 394
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.81 E-value=1.8e+02 Score=30.44 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKER-----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
++-+.+.+.+++|...-+..... -...+...|..+.-.|++++|-...-.|... +..-|...+.-+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 33445666777777766655431 2245666777777777777777766666542 33344444444444443
No 395
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.76 E-value=98 Score=24.22 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=32.9
Q ss_pred HHHHHHHHHhh--ccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 276 MGELASRKLVE--LETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 276 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
.+..+|+.|.. ++..-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888875 4455666888899999999999999998874
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.71 E-value=25 Score=32.00 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=34.6
Q ss_pred CCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 153 RNVY-TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 153 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
+|.. -|+..|....+.|++++|+.++++..+.|+.--..+|..-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3444 46688999999999999999999999988776666665443
No 397
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=55.54 E-value=1.9e+02 Score=27.56 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHhcCC-----C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----c
Q 012539 137 CGNMNKAMDFFWGMKE-----R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV----V 203 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 203 (461)
.++.+.|.+-+-...+ . +......+...|...++|+.--+...-+...... ...+...++.-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5666777665544432 1 3345666777788888887766666555332111 22233333332221 1
Q ss_pred CcHHHH---HHHHHHhhhhcCCccC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------H
Q 012539 204 GLVEEG---REHFDSMRREYGIEPW---LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL------------L 265 (461)
Q Consensus 204 g~~~~a---~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------l 265 (461)
.+.+-- .+.++...+. .+-.. ...-..|...+-..|++++|..++.+.+++ ||.++ +
T Consensus 104 ~d~~~k~~li~tLr~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQm 178 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQM 178 (439)
T ss_pred CCchhHHHHHHHHHHhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHH
Confidence 111222 2222222211 11111 223345677788899999999999988532 33222 3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcc--CCC-----cchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCC
Q 012539 266 NACRMYKNTEMGELASRKLVELE--TKN-----HGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDR 336 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~--p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~ 336 (461)
..|...+|+-.|.-+-+++.... .++ ...|..++....+.+.+=++-+.++..-..|-.+.....|+.+-.
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 44778888888888877776432 122 236888999999999999999999999887766554455665443
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.28 E-value=37 Score=33.89 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHHHHhhCCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012539 40 DLARKMFDEMPERDPIAWNAM---LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116 (461)
Q Consensus 40 ~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 116 (461)
+-|-.+|.-|..++...|-+| .-.+...|+...|...+.........-..+....+.+...+.+....|-.++.+.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 446666666666654444332 22233457777787777766553322233445556666666666666666666666
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 012539 117 RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152 (461)
Q Consensus 117 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 152 (461)
... ...+-++-.+.++|....+++.|++.|+...+
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 554 34445556677777777788888777776553
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.16 E-value=27 Score=31.79 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 94 (461)
-||..|...++.|+.++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888899999999999999888887644445443
No 400
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.14 E-value=15 Score=28.85 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=26.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
....|.-..|..+|++|...|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456777899999999999999985 56666543
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.10 E-value=1.9e+02 Score=26.95 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=8.0
Q ss_pred HHHHHHHHhhccCCC
Q 012539 277 GELASRKLVELETKN 291 (461)
Q Consensus 277 a~~~~~~~~~~~p~~ 291 (461)
|.+...++.+.+|.-
T Consensus 381 AvEAihRAvEFNPHV 395 (556)
T KOG3807|consen 381 AVEAIHRAVEFNPHV 395 (556)
T ss_pred HHHHHHHHhhcCCCC
Confidence 444555555666554
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.81 E-value=2.1e+02 Score=27.57 Aligned_cols=16 Identities=6% Similarity=0.053 Sum_probs=7.6
Q ss_pred HHHhcCCHHHHHHHHH
Q 012539 133 MYSKCGNMNKAMDFFW 148 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~ 148 (461)
..++.|+.+.+..+++
T Consensus 74 ~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 74 DAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 3344555555444444
No 403
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.70 E-value=2.1e+02 Score=27.32 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=49.8
Q ss_pred CHHHHHHHH---HHHHhcCChHHHHHHHHHHhhccCC-CcchHHHHHHHHh-hcCChhHHHHHHHHHHh
Q 012539 257 HAGAWGALL---NACRMYKNTEMGELASRKLVELETK-NHGAYVLLSNIYA-ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 257 ~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 320 (461)
|...|.++. ..+.+.|-+..|.++.+-+..++|. |+..-...|..|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444554444 4578899999999999999999999 8777777777774 78888888888887654
No 404
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.45 E-value=74 Score=27.65 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.4
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.....++..+.+.|+.++|.+.|.++...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 355567778889999999999998887654
No 405
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.29 E-value=1.1e+02 Score=27.22 Aligned_cols=58 Identities=10% Similarity=-0.138 Sum_probs=46.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+-.++...|++-++++.-..++...|.|..+|.--+.+.+..=+..+|..=|....+.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3445667788889999999999999999999988888888777777887777766553
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.31 E-value=12 Score=36.16 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=64.8
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcCCccChhH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCC
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEH-YGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKN 273 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~ 273 (461)
+......+.++.|..++.+++ .+.|+-.. |..=..++.+.+++..|+.=+.++ ...|... .|.-=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 444556788899999998887 45776443 333447788888888887655444 4445433 33333345677788
Q ss_pred hHHHHHHHHHHhhccCCCcc
Q 012539 274 TEMGELASRKLVELETKNHG 293 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p~~~~ 293 (461)
+.+|...|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 88999999999999998863
No 407
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.10 E-value=27 Score=36.60 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 275 (461)
+|..+.+.|-.+-|+.+.+.-..+ ......+|+++.|++.-.++. |..+|..|.......|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 455555666666666554433222 123456788888887777664 6678888888888888888
Q ss_pred HHHHHHHHHhh
Q 012539 276 MGELASRKLVE 286 (461)
Q Consensus 276 ~a~~~~~~~~~ 286 (461)
-|+..|++...
T Consensus 690 IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 690 IAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhhh
Confidence 88888877654
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.42 E-value=34 Score=22.85 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=9.2
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m 181 (461)
+|.+|.+.|++++|.+.++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=3.5e+02 Score=29.19 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
-|..|+-.|...|..++|++++.+.....-.-|.. ..+.-..+.+.+.+.+ .++..+.-... .+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~-~~~~~Li~~y~-~wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLG-AENLDLILEYA-DWV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhc-ccchhHHHHHh-hhh
Confidence 47788888999999999999988876531000110 0011111233333332 12111100000 111
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 136 KCGNMNKAMDFFWGMKERNVYTWT-SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
-..+.+...++|..-......+.+ ..+-.|......+-++..++.+....-.++..-.+.++..|..
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 233444455555441100000000 1123455566677777777777665555566666666665543
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.53 E-value=62 Score=27.45 Aligned_cols=51 Identities=14% Similarity=-0.024 Sum_probs=31.4
Q ss_pred hcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
...+.+......+.+.+-....|++.+|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444433345677777777777777777777777777666
No 411
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.33 E-value=96 Score=24.99 Aligned_cols=43 Identities=5% Similarity=-0.039 Sum_probs=18.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 96 LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
+..+...+..-.|..+|+.+.+.+.+.+..|.-.-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3333333333445555555555443333322222344444444
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.14 E-value=1.8e+02 Score=25.69 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh--
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC-THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK-- 136 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 136 (461)
++..+-+.|+++++...++++...+...+..-.+.+-.+| ...|....+.+++..+..............++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred ----cCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHH---cCCCCCHHH
Q 012539 137 ----CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAG-----------------EKSLELFSLMKQ---AGVRPNEVT 192 (461)
Q Consensus 137 ----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----------------~~A~~~~~~m~~---~g~~p~~~~ 192 (461)
..--.+...+.+...-|...+-.+.+-.+-..|++ +.|.+.|++... ..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHhh-----cCcHHHHHHHHHHhhhh
Q 012539 193 FVSVLRGCCV-----VGLVEEGREHFDSMRRE 219 (461)
Q Consensus 193 ~~~ll~~~~~-----~g~~~~a~~~~~~~~~~ 219 (461)
+..|+--++- .|+.++|.++-+.....
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.70 E-value=1.8e+02 Score=25.44 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc----ChhHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP----WLEHYGCLV 233 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li 233 (461)
.+.-|+.+.+.+..++|+.+.++-.+.+ +.|..+-..++..++-.|++++|..-++... .+.| ...+|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3445667777888888888887776652 3345556667778888888888877776553 2333 345555555
Q ss_pred H
Q 012539 234 D 234 (461)
Q Consensus 234 ~ 234 (461)
.
T Consensus 80 r 80 (273)
T COG4455 80 R 80 (273)
T ss_pred H
Confidence 4
No 414
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.03 E-value=2e+02 Score=25.90 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=114.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHHHHH---cCC--CCchHHHHHHHHHHHhc
Q 012539 66 QCGKSREALHLFHLMQIHDVKLNE---VSMVSVLSACTHLGALDQGRWAHVYIER---NRL--KMTVTLGTALVDMYSKC 137 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~ 137 (461)
+..++++|+.-|++.++....--. .+...++....+.+++++....+.+++. +.+ ..+....|++++.-+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345799999999998874322222 2455667888899999999988888763 211 22445667788877777
Q ss_pred CCHHHHHHHHHhcCC-----CCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC----CC-------HHHHHHHH
Q 012539 138 GNMNKAMDFFWGMKE-----RNVY----TWTSVIGGLAMNGAGEKSLELFSLMKQAGVR----PN-------EVTFVSVL 197 (461)
Q Consensus 138 g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~-------~~~~~~ll 197 (461)
.+.+--..+|+.-.+ ++.. +-+.|...|...|.+.+..++++++...-.. .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 777766666654331 2222 3345666777777787888888877543111 11 23466667
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH----HHHHhcCCHHHHHH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV----DLYGRAGRLDEALD 247 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~ 247 (461)
..|....+-..-..+++..+.-...-|.+.....+- .+..+.|++++|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 778887877777888877654334445554443322 23456688887754
No 415
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.18 E-value=89 Score=30.29 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 253 PMKPHAG--AWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 253 ~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.++|... +.++-+..+.+++++..|..+.++++++.|+.
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 4454333 66677777889999999999999999998865
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.93 E-value=2.2e+02 Score=25.65 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=75.8
Q ss_pred HcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCcCHHHHHHHHHHHhccCC-----H
Q 012539 35 KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF----HLMQIHDVKLNEVSMVSVLSACTHLGA-----L 105 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~ 105 (461)
+++++++|++++..- ...+.+.|+...|-++- +-..+.+.++|......++..+...+. .
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456677777765431 22334445544333322 223334555565555555554443332 1
Q ss_pred HHHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 106 DQGRWAHVYIERNR--LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 106 ~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+-..+...+- +.+ ..-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 1222223333 222 2236778888999999999999999888655544444443344333333333322
Q ss_pred cCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 184 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
|...-.+++ -|.-.+++..|...+....+.
T Consensus 141 -----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222233 345567788888777666543
No 417
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.84 E-value=90 Score=25.93 Aligned_cols=36 Identities=6% Similarity=-0.137 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
.-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334455555555544333333222234444444433
No 418
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.11 E-value=4e+02 Score=28.50 Aligned_cols=215 Identities=14% Similarity=0.046 Sum_probs=114.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchH-------HHHHHHH-HHHhcCCHHHHHHHHHhcCC--------CCHHHHHHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVT-------LGTALVD-MYSKCGNMNKAMDFFWGMKE--------RNVYTWTSVIG 163 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 163 (461)
....++++|..+..++...-.+|+.. .+++|-. .....|+.++|.++-+.... ..++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45567888888888877643333211 2232222 22346888888877665442 35677888888
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHH---HHH--HHHhhcCcH--HHHHHHHHHhhhhcCCc-c----ChhHHHH
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFV---SVL--RGCCVVGLV--EEGREHFDSMRREYGIE-P----WLEHYGC 231 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll--~~~~~~g~~--~~a~~~~~~~~~~~~~~-p----~~~~~~~ 231 (461)
+..-.|++++|..+..+..+.--.-+...|. .+. ..+..+|.. .+....|......+.-. | -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888776542222333222 221 223455633 33333343333221111 1 1234444
Q ss_pred HHHHHHhcCCHHHHHHH----HHhC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhccCCC--cchHH----
Q 012539 232 LVDLYGRAGRLDEALDV----INKM-PMKPHAG----AWGALLNACRMYKNTEMGELASRKLVELETKN--HGAYV---- 296 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~----~~~~-~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---- 296 (461)
+..++.+ ++.+..- +.-. ...|... .+..|.......|+.+.|....+.+..+...+ ...|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4455544 3333322 2211 1123222 22355666888999999999988887643222 12222
Q ss_pred -HHHHHHhhcCChhHHHHHHHH
Q 012539 297 -LLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 297 -~l~~~~~~~g~~~~a~~~~~~ 317 (461)
.-...-...|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222223467887777776654
No 419
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.10 E-value=97 Score=24.85 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC
Q 012539 243 DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306 (461)
Q Consensus 243 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 306 (461)
+.|.++.+-|+ .....-.........|++.-|..+.+.+...+|++..+-...+.+|.+.|
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45666777664 23333334445677899999999999999999999877777777766544
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.90 E-value=35 Score=22.77 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 39 VDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 39 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
++...++++.+.. .|-.-.-.+|.+|.+.|++++|.+...++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444555554432 2444445688999999999999998888765
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.45 E-value=1.8e+02 Score=29.87 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChH------HHHHHHHHHHHCCCCcCHHHHHHH
Q 012539 28 AMISACAKCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSR------EALHLFHLMQIHDVKLNEVSMVSV 95 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~t~~~l 95 (461)
+|..+|...|++-.+..+++..... =...+|.-|+.+.+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999986532 2558899999999999864 3444444443 55588888887
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 012539 96 LSACTHLGALDQGRWAHVY 114 (461)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~ 114 (461)
+.+....-+-..+.-++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~ 128 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHE 128 (1117)
T ss_pred HHhhcChHhHHhccHHHHH
Confidence 7765544333333333333
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.22 E-value=1.1e+02 Score=25.86 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012539 232 LVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 266 (461)
.+-.|.+.|.+++|.++++..-..|+......-+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~ 151 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLL 151 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHH
Confidence 34467777888888888777733555544443333
No 423
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.92 E-value=67 Score=32.23 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC-Ch--hHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012539 28 AMISACAKCGDVDLARKMFDEMPER-DP--IAWNAMLAGYAQCGKSREALHLFHLMQIHD 84 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 84 (461)
+|...+-+.|...+|--++...... +. ..+..+.++++..|++...+..|...++.|
T Consensus 254 SlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 254 SLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred hHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 3444444555555554444332221 11 124455556666666666555565555543
No 424
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.88 E-value=74 Score=24.05 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=11.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 012539 59 AMLAGYAQCGKSREALHLFHLM 80 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m 80 (461)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445555556666666655554
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.74 E-value=2.7e+02 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
........|++-|+.+.|.+.+...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555566666666666655543
No 426
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.33 E-value=3.1e+02 Score=26.67 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012539 158 WTSVIGGLAM---NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199 (461)
Q Consensus 158 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 199 (461)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444444 36677777777777777766654444333333
No 427
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=44.25 E-value=3.7e+02 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
...|..++.+....|-.....-+.+
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~ 364 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQ 364 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444455555555554443333333
No 428
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.07 E-value=2.4e+02 Score=25.36 Aligned_cols=81 Identities=16% Similarity=0.017 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHH-HHHHHHh
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV-LLSNIYA 303 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~ 303 (461)
++.....+...|.+.|++.+|..-|-.-. .|+...+..++.-.. .+..|.+...|. -.+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~---------------~~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWS---------------TKGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHH---------------HHTSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHH---------------HhcCCcchhHHHHHHHHHHH
Confidence 57788889999999999999988765432 222222222222222 233344333433 2444567
Q ss_pred hcCChhHHHHHHHHHHhC
Q 012539 304 ESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~ 321 (461)
-.++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788899999988887754
No 429
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.55 E-value=4.8e+02 Score=28.60 Aligned_cols=250 Identities=12% Similarity=0.055 Sum_probs=146.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 18 IHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 18 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
+..+|+.+-...+..+.+.+..+....+...+..+|...-...+.+..+.+........+..+... +|...-...+.
T Consensus 630 L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~ 706 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALD 706 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHH
Confidence 346788888888888888876554455555566666666666666665543322222333344432 56666667777
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH-HHH
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK-SLE 176 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~ 176 (461)
++...+..+ .. .+....+ .+|..+-...+..+.+.+..+. +......++...-...+.++...+..+. +..
T Consensus 707 aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~ 778 (897)
T PRK13800 707 VLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGD 778 (897)
T ss_pred HHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHH
Confidence 776544221 11 2222222 5566666667777776655432 3344556777777777778777776543 445
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 177 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
.+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...+.++.+.+.- ++...+..+-..|
T Consensus 779 ~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~ 850 (897)
T PRK13800 779 AVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALVEALTDP 850 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHHHHhcCC
Confidence 5555543 45677777788888888876555444444433 24556666677777777753 3444444443356
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+..+=...+.++...+....+...+..+.+
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666666666666665334455555555444
No 430
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.36 E-value=45 Score=24.33 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=17.9
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 012539 36 CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 68 (461)
.-+.+.+.++++.++.+.+.+|..+..++-..+
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 344555555555555555555555555554433
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.26 E-value=92 Score=22.72 Aligned_cols=53 Identities=6% Similarity=-0.003 Sum_probs=33.8
Q ss_pred HHhcCChHHHHHHHHHHhhccCC----C-----cchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 268 CRMYKNTEMGELASRKLVELETK----N-----HGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..+.|++..|.+.+.+..+.... . ..+...+.......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567777776665555432211 1 12334567778889999999999888765
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.96 E-value=83 Score=19.68 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=19.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555666666666666666666655555544
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.72 E-value=2.9e+02 Score=25.80 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 71 REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+.-+.++++.++.+ +-+.......|..+.+..+.+...+.++.++... +.+..+|...++.
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 34455555555542 1234444555555555555555555555555542 3344455444443
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.17 E-value=3.1e+02 Score=26.10 Aligned_cols=116 Identities=13% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH-HHHH------hCCChHHHHHHHHHHHHcCCCCCHHHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI-GGLA------MNGAGEKSLELFSLMKQAGVRPNEVTF 193 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~~~ 193 (461)
|-.+.+...+...+...|+.+.|.++.++.. .++.... ..+. ..|.. . ......-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL----f~~e~~~~~~F~~~~~~~~~g~~---r------L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL----FAFERAFHPSFSPFRSNLTSGNC---R------LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHhhhhhcccccCcc---c------cCCccccchHHH
Confidence 5556666667777777888777777766542 1111000 0000 00000 0 000011234444
Q ss_pred HHH---HHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 012539 194 VSV---LRGCCVVGLVEEGREHFDSMRREYGIEP--WLEHYGCLVDLYG-RAGRLDEALDVINKM 252 (461)
Q Consensus 194 ~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 252 (461)
.++ +..+.+.|-+..|.++.+.+. .+.| |+.....+|+.|+ ++++++--.++.+..
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 443 345566777777777777664 3444 4555555666664 566666666666654
No 435
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.09 E-value=2.8e+02 Score=25.55 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=18.5
Q ss_pred HHHcCC--HHHHHHHHhhC-C-CCChhHHHHHHHHH
Q 012539 33 CAKCGD--VDLARKMFDEM-P-ERDPIAWNAMLAGY 64 (461)
Q Consensus 33 ~~~~g~--~~~A~~~~~~m-~-~~~~~~~~~li~~~ 64 (461)
+++.|. ++.++++...+ + +++...|..++..+
T Consensus 48 l~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 48 LARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp HHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 334454 56777777777 3 45666777666543
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.00 E-value=1.3e+02 Score=28.96 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--C---------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKE--R---------NVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~--~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
..|++.++-.||+..|+++++.+.- + .+.++.-+.-+|...+++.+|++.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888999999988887651 1 34567777778888889999998888764
No 437
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=41.96 E-value=8.4 Score=26.02 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=16.6
Q ss_pred ceEEEecCCcccccccCccCC
Q 012539 437 REIIVRDRNRFHHFKEGKCSC 457 (461)
Q Consensus 437 ~~~~~~~~~~~h~~~~g~~s~ 457 (461)
..|-+.|.+..|+|+|||-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467789999999999998653
No 438
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=41.81 E-value=3e+02 Score=25.83 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK-SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 207 (461)
.+.+.+++.++.+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||......++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 467788888877777777776666555556666666555544443 33344444433 78888888888888776666
Q ss_pred HHHHHHHHhhhhcCCccChhHHHHHHHHHHhc----CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012539 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRA----GRLDEALDVINKMPMKPHAGAWGALLNACR 269 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 269 (461)
.....+..+... ....+.. .|+..-+|+ .+.+.+..+++.+...+|...|+.+..-+.
T Consensus 248 ~~~~~i~~~L~~-~~~~~~e---~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 248 LVAILIDALLQS-PRLCHPE---VLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLV 309 (340)
T ss_pred HHHHHHHHHhcC-cccCChH---HHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 666655555543 2222233 233222222 344444455555543444444544444333
No 439
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.42 E-value=3.7e+02 Score=26.68 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=81.0
Q ss_pred HHHHHHHHhhCCCCC--hh--------HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCcC--HH-----HHHHHH-HHH
Q 012539 39 VDLARKMFDEMPERD--PI--------AWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLN--EV-----SMVSVL-SAC 99 (461)
Q Consensus 39 ~~~A~~~~~~m~~~~--~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~-----t~~~ll-~~~ 99 (461)
-|+|+...++.++.| .. ....++-+-.-.|++.+|++-...|.+.- -.|. .. ....++ .-|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 355555555555554 11 22233344456799999999998887631 1222 11 122233 334
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHH--HHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHH--------HHH--HHh
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLG--TALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV--------IGG--LAM 167 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~--~~~ 167 (461)
...+.++.|+.-|....+.--..|...+ ..+.-.|.+.|+.+.-.++++.+..++..++..- +.+ ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5667788888777776664433343322 3356678888888888888887776644332211 111 124
Q ss_pred CCChHHHHHHHHHHHH
Q 012539 168 NGAGEKSLELFSLMKQ 183 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~ 183 (461)
.+++.+|...+++-.+
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 5666666666666544
No 440
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.05 E-value=7.4e+02 Score=30.11 Aligned_cols=280 Identities=10% Similarity=0.011 Sum_probs=142.1
Q ss_pred ccCCchHHHHHHhcC----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHhh-CCCCChhHHHHHHHHHHHcCChHHHHHH
Q 012539 4 ELGCLGYCQKVFDGI----HEP--DVVCQTAMISACAKCGDVDLARKMFDE-MPERDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
++|.+..|...+++- .+. ...-|-.+...|+.-+++|....+... ...++ ...-|.-....|+++.|...
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~C 1471 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAAC 1471 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHH
Confidence 456666777777662 111 223344455588888888887777663 33332 22344455667888899999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH-HHHHHhcCCHHHHHHHHH-------
Q 012539 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL-VDMYSKCGNMNKAMDFFW------- 148 (461)
Q Consensus 77 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~------- 148 (461)
|+++.+.+ ++...+++.++......+.++...-..+-.... ..+....++++ +.+--+.++++.......
T Consensus 1472 ye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w 1549 (2382)
T KOG0890|consen 1472 YERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYW 1549 (2382)
T ss_pred HHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccch
Confidence 99888754 233667777777666667666665544333322 22222222222 233344555554443322
Q ss_pred ----------hcCCCCHHHHHHHH-----------HHHHhCCChHHHHHHHHHHHH-----------cCCCCCHHH----
Q 012539 149 ----------GMKERNVYTWTSVI-----------GGLAMNGAGEKSLELFSLMKQ-----------AGVRPNEVT---- 192 (461)
Q Consensus 149 ----------~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-----------~g~~p~~~~---- 192 (461)
.+.++|......+| .+++..|.+..+.++.-++.. .+..++..+
T Consensus 1550 ~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~s 1629 (2382)
T KOG0890|consen 1550 SVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNS 1629 (2382)
T ss_pred hHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 22233433221111 122223332233333222110 112232211
Q ss_pred --HHHHHHHHhhcCcHHHHHHHHHHhhhhc----CCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 012539 193 --FVSVLRGCCVVGLVEEGREHFDSMRREY----GIEP-WLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265 (461)
Q Consensus 193 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 265 (461)
|..-+.--....+..+-.--+++..-.. +... -...|........++|+++.|...+-......-+..+--..
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~A 1709 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERA 1709 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHH
Confidence 1111111111111111111111111110 1122 24678888888888999999998776653222334555556
Q ss_pred HHHHhcCChHHHHHHHHHHhhcc
Q 012539 266 NACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
....+.|+...|+.++++..+..
T Consensus 1710 K~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1710 KLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhccHHHHHHHHHHHHHhh
Confidence 66888999999999999988643
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.91 E-value=2.1e+02 Score=25.48 Aligned_cols=56 Identities=9% Similarity=0.047 Sum_probs=35.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc----C-CCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 94 SVLSACTHLGALDQGRWAHVYIERN----R-LKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149 (461)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 149 (461)
.+...|...|+++.|.++++.+... | ..+...+...+..++.+.|+.++...+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455666777777777777766431 1 233445556677777778887777665443
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.54 E-value=2.6e+02 Score=24.76 Aligned_cols=100 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH----------------HHHHHhcCCCCHHH
Q 012539 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA----------------MDFFWGMKERNVYT 157 (461)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----------------~~~~~~~~~~~~~~ 157 (461)
..+--|.+..+..--.++.+-....+++.+..-..+++ +...|++..| ..+|+-..+|.+..
T Consensus 164 CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~ 241 (333)
T KOG0991|consen 164 CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLL 241 (333)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHH
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSV 196 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 196 (461)
...|+..+. .+++++|.+++.++.+.|..|....-+.+
T Consensus 242 v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 242 VKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.71 E-value=1.7e+02 Score=26.86 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.++..+.+.+++.+..+.++.+. .+..-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555555555555555555552 344445566677788888888888887765
No 444
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.65 E-value=2.9e+02 Score=25.03 Aligned_cols=148 Identities=11% Similarity=-0.037 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHH
Q 012539 36 CGDVDLARKMFDEMPER-DPIAWNAMLAGYAQC----GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH----LGALD 106 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~ 106 (461)
.+++..|...+...... +......+...|... .+..+|.+.|+.+-+.|.. .....+...+.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHH
Confidence 44455555555544432 222333333333222 2345566666655544421 222223333322 22556
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-------CHHHHHHHHHhcCCC-CHHHHHHHHHHHHh----CCChHHH
Q 012539 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCG-------NMNKAMDFFWGMKER-NVYTWTSVIGGLAM----NGAGEKS 174 (461)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A 174 (461)
+|...+..+.+.|..+.......+..+|..-+ +...|...|...-.. +......+...|.. ..+.++|
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 66666666666654332222333444444321 122456666554432 33344444433332 2355666
Q ss_pred HHHHHHHHHcCC
Q 012539 175 LELFSLMKQAGV 186 (461)
Q Consensus 175 ~~~~~~m~~~g~ 186 (461)
...|.+..+.|.
T Consensus 211 ~~wy~~Aa~~g~ 222 (292)
T COG0790 211 FRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHCCC
Confidence 666666666554
No 445
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.43 E-value=4.5e+02 Score=28.26 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=87.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
+....+|+++.|++.-..+. |..+|..|+.....+|+.+-|...|++.+. |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988776654 566899999999999999999999988754 2233334556788888777
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+-+.+..+ -|.. .....-.-.|+.++-.++++..+..|-. |- ....+|.-++|.++.++...
T Consensus 720 m~~iae~r----~D~~---~~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDAT---GQFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhH---HHHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 66655332 1211 1111223468888888888887643322 21 13467888889988888775
No 446
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.48 E-value=3.8e+02 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
..|+.-|.+.++.++|+.++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356667777777777777776663
No 447
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.31 E-value=2.4e+02 Score=25.91 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
|+..|..+..+|...|+...+.+
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHH
Confidence 55666666666666665554443
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.84 E-value=1.2e+02 Score=26.97 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012539 231 CLVDLYGRAGRLDEALDVINKMP--------MKPHAGAWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
.|..-|.+.|++++|.++|+.+. ..+...+...+..++...|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555666666666666666551 0112224444555556666666555443
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.15 E-value=2.2e+02 Score=22.91 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 178 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
.+.+.+.|++++..- ..++..+.+.++.-.|.++++.+.++ +...+..|.-.-++.+...|-+
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 344455565555332 23455555555556666677666543 3333444444445566666654
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.85 E-value=1.8e+02 Score=29.86 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=27.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhcCcH
Q 012539 160 SVIGGLAMNGAGEKSLELFSLMKQA--GVRPNEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 160 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~ 206 (461)
+|..+|..+|++..+.++++.+... |-+.=...++..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5667777777777777777766542 1111133455555666666654
No 451
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.82 E-value=3.1e+02 Score=24.44 Aligned_cols=81 Identities=15% Similarity=-0.067 Sum_probs=51.6
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhhcCcHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMK--ERNV-YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL-RGCCVVGLVEEG 209 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a 209 (461)
|....+++.|...|-+.. .|++ .-|+.-+.++.+..+++.+..--++.++ +.||.+--...+ ........+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 445566777777776554 4555 4466777778888888887777776666 566654433333 344456667777
Q ss_pred HHHHHHh
Q 012539 210 REHFDSM 216 (461)
Q Consensus 210 ~~~~~~~ 216 (461)
...+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7776665
No 452
>PRK10941 hypothetical protein; Provisional
Probab=36.68 E-value=3.3e+02 Score=24.72 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
.+.+-.+|.+.++++.|+...+.+.. +.|+ ..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34444555555555555555555555 2333 222333333445555555555544444443
No 453
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.12 E-value=1.6e+02 Score=21.09 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Q 012539 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 174 (461)
+...+.+.|.++++.++.++..+|.+...++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677788888888888888888888877776655444
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.05 E-value=2.8e+02 Score=25.88 Aligned_cols=52 Identities=6% Similarity=-0.024 Sum_probs=25.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEV---TFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
.-+-.+.|+..+|.+.|+++.+. .|-.. .-..|+.+|.....+.+...++.+
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566666666666666443 12111 123455566555544444444433
No 455
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.93 E-value=62 Score=28.34 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=20.7
Q ss_pred cCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 203 VGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.++.+.+.+++.+.. .+.| +...|--+...-.+.|+++.|.+-+++.
T Consensus 8 ~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~ 55 (287)
T COG4976 8 SGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEV 55 (287)
T ss_pred cCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHH
Confidence 444444444444443 2222 2344444444444445554444444443
No 456
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.71 E-value=1.9e+02 Score=23.94 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=35.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH
Q 012539 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243 (461)
Q Consensus 181 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 243 (461)
+.+.|++++..-. .++.........-.|.++++.+.+. +...+..|.---++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3455666554433 3444444445555677777777654 54555555555566777777653
No 457
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.48 E-value=90 Score=22.56 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChH
Q 012539 35 KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSR 71 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 71 (461)
+..+.++|..+++.++.+...+|....++.-..|...
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 4444555666666666555555555555555444333
No 458
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.26 E-value=4.8e+02 Score=25.97 Aligned_cols=24 Identities=8% Similarity=-0.159 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVT 125 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~ 125 (461)
.++.+.|..++..+...|.+|...
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 355666666666666555554433
No 459
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.24 E-value=5.4e+02 Score=26.58 Aligned_cols=85 Identities=8% Similarity=0.001 Sum_probs=65.3
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-----C--HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCCh
Q 012539 237 GRAGRLDEALDVINKM-PMKP-----H--AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308 (461)
Q Consensus 237 ~~~g~~~~A~~~~~~~-~~~p-----~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 308 (461)
.+..++..+.++|..- ..-| + ......|--+|....+.+.|.++++++.+.+|.++.+-..+..+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3556777788777543 1111 1 125667777788999999999999999999999988888888888999999
Q ss_pred hHHHHHHHHHHhC
Q 012539 309 DRVINVRQIMKAK 321 (461)
Q Consensus 309 ~~a~~~~~~m~~~ 321 (461)
++|..+....+..
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988877543
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.08 E-value=7.1e+02 Score=27.86 Aligned_cols=163 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------------------------------C-HHHHHHHHHHHHhCCChHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKER-------------------------------N-VYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~-------------------------------~-~~~~~~li~~~~~~g~~~~A~~ 176 (461)
.+..+|..+|+..+|+..|.+...- . ..-|...+..+-+++..+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHHHcCCCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 177 LFSLMKQAGVRPN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 177 ~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+-....+. ++++ ..+++.+.+-....|.+-+|...+-.-- ...-.......++-.+..+|.++.-.+ +
T Consensus 1005 lA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l~~L~~----f 1076 (1480)
T KOG4521|consen 1005 LAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGELEALAT----F 1076 (1480)
T ss_pred HHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccchHHHhh----C
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHhhccCCCcchHHHHHHHH-hhcCChhHHHHHH
Q 012539 253 PMKPHAGAWGALLNACRMYKNTEMGEL-ASRKLVELETKNHGAYVLLSNIY-AESKNWDRVINVR 315 (461)
Q Consensus 253 ~~~p~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~~ 315 (461)
+.- |--++... +++..-+..|.....|..|+.+| ...++|.+|-.+.
T Consensus 1077 pfi----------------gl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1077 PFI----------------GLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred Ccc----------------chHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
No 461
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.52 E-value=4.1e+02 Score=24.95 Aligned_cols=116 Identities=9% Similarity=0.058 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh------cCcHHHHHHHHHHhhhhcCCccChh-HHHHHHHHHHhcCCHH
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV------VGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLD 243 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~ 243 (461)
.+++..++++....+. |..+.....|.++-. .-++..-..+|+.+. .+.|++. +.|- .-+.++..-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehH-HHHHHHhhhHH
Confidence 5788888888877764 777777766665532 235666677777664 3455543 3332 22344444456
Q ss_pred HHHHHHHhCCCCCCH---HHHHHH-HHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 244 EALDVINKMPMKPHA---GAWGAL-LNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 244 ~A~~~~~~~~~~p~~---~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.++..++-+..+|-. ..|.+. ...+.+.|+.++|...|++...+.++.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 667777666434322 233333 333788899999999999988877664
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.35 E-value=1.3e+02 Score=20.34 Aligned_cols=44 Identities=5% Similarity=-0.016 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
....++.|+..+++..-.++++..+.++...|. .+..+|.--++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR 50 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVR 50 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 344455555555555555555555555555552 34444443333
No 463
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.13 E-value=2e+02 Score=26.86 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc
Q 012539 232 LVDLYGRAGRLDEALDVINKM-P---MKP--HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 305 (461)
=.+-|.+..++..|...|.+- . -.| +.+.|+.-..+-.-.|++..++.-..+++..+|.....|.-=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 344566777777777777665 1 123 3445666555556667788888888888888888777777666666666
Q ss_pred CChhHHHHHHH
Q 012539 306 KNWDRVINVRQ 316 (461)
Q Consensus 306 g~~~~a~~~~~ 316 (461)
.++++|...-+
T Consensus 167 e~~~~a~nw~e 177 (390)
T KOG0551|consen 167 ERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHh
Confidence 66555544443
No 464
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.07 E-value=4e+02 Score=26.47 Aligned_cols=139 Identities=11% Similarity=-0.075 Sum_probs=0.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------------CHHHHHHHHH
Q 012539 96 LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER------------NVYTWTSVIG 163 (461)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~li~ 163 (461)
+.++....++..+..-........ ..+......--..+.-.|++.+|.+++....-. .-..||.|.-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHhCCChHHHHHHHHHHHH-------cCCCC----------CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccCh
Q 012539 164 GLAMNGAGEKSLELFSLMKQ-------AGVRP----------NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~-------~g~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 226 (461)
.+.+.|.+..+..+|.+..+ .|++| .-.......-.+.+.|+.-.|.+.|..... -+..++
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vfh~nP 369 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VFHRNP 369 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HHhcCc
Q ss_pred hHHHHHHHHHH
Q 012539 227 EHYGCLVDLYG 237 (461)
Q Consensus 227 ~~~~~li~~~~ 237 (461)
..|.-|..+|.
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.67 E-value=1.1e+02 Score=23.17 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 104 (461)
++......+..-.|.++++++.+.+..++..|....|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555556666777777777777666666666666666665554
No 466
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.93 E-value=1.6e+02 Score=19.68 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hhcCcHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC-----CVVGLVEEGREH 212 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~ 212 (461)
+...|++-+|-++++.+......|....+..+|... .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344677777777777775432233344454555432 234555555443
No 467
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.18 E-value=3.6e+02 Score=23.63 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=7.3
Q ss_pred hhcCcHHHHHHHHHHh
Q 012539 201 CVVGLVEEGREHFDSM 216 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~ 216 (461)
...|++++|.+....+
T Consensus 75 I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 75 IEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHhccHHHHHHHHHHh
Confidence 4444444444444433
No 468
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.16 E-value=1.3e+02 Score=20.81 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=28.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 204 (461)
...|+.+.+.+++++..+.|..|.......+.-+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 457888999999999998888887766665665554444
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.14 E-value=2.6e+02 Score=21.85 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 173 KSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
.+.++|..|...|+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777665544 44555666666677777777777753
No 470
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=30.57 E-value=1.6e+02 Score=20.45 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
+.|.+++..+.... ..+++.||++...+.
T Consensus 14 EmA~~mL~DLr~de-kRsPQLYnAI~k~L~ 42 (82)
T PF11123_consen 14 EMAQQMLADLRDDE-KRSPQLYNAIGKLLD 42 (82)
T ss_pred HHHHHHHHHhcchh-hcChHHHHHHHHHHH
Confidence 34444444443322 345556665544443
No 471
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.47 E-value=5e+02 Score=24.96 Aligned_cols=55 Identities=4% Similarity=-0.165 Sum_probs=31.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHh--ccCCHHHHHHHHHHHHHc
Q 012539 63 GYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVLSACT--HLGALDQGRWAHVYIERN 118 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 118 (461)
.+.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++++|...++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677788888888777765 444443 3333444443 233456666666655543
No 472
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.24 E-value=5.1e+02 Score=25.05 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHD--VKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 115 (461)
.+.-+...|...|+.+.|++.|.+.+..= .+-....|..++..-.-.++|.....+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 34455556666666666666665543310 1111223333444444445554444444333
No 473
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=30.24 E-value=5.8e+02 Score=25.63 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTW 158 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (461)
...|-.++.-+...++++.|.++.+.... ...|.+|..+..+..++.-++..|..+.+-|-++|
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~e------qTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsy 636 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQE------QTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSY 636 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhccc------hHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHH
Confidence 33455566666666667766666554322 23555555555555555555555554444443333
No 474
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.79 E-value=3.6e+02 Score=23.07 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=13.6
Q ss_pred hhcCChhHHHHHHHHHHh
Q 012539 303 AESKNWDRVINVRQIMKA 320 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~ 320 (461)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356788888888888765
No 475
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.72 E-value=6.9e+02 Score=26.37 Aligned_cols=119 Identities=12% Similarity=0.027 Sum_probs=63.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
++..-|+-++|..+.++|.... .|- ..-..++..+|+-.|+.....+++.-... ....|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3445566778888888887643 222 11123455577777777777777766543 334445555555555555666
Q ss_pred HHHHHHHHHhCC--CCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHhh
Q 012539 242 LDEALDVINKMP--MKPHAGAWG--ALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 242 ~~~A~~~~~~~~--~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
.+....+.+-+. ..|.+..-. +|.-+|+-.| ..+|..+++.|..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 666655555542 223333222 2222344444 3456666665554
No 476
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.71 E-value=1.2e+02 Score=17.61 Aligned_cols=13 Identities=0% Similarity=-0.345 Sum_probs=5.9
Q ss_pred HHhcCChHHHHHH
Q 012539 268 CRMYKNTEMGELA 280 (461)
Q Consensus 268 ~~~~~~~~~a~~~ 280 (461)
+-..|++++|..+
T Consensus 11 ~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 11 FYQKGKYDEAIHF 23 (36)
T ss_dssp HHHTT-HHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 4444555555555
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.66 E-value=99 Score=23.75 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
..++....+.+.+-.|.++++.|.+.+...+..|.-..|..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3455666666667777777777777666666666555555555444
No 478
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=29.38 E-value=1.1e+02 Score=28.16 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 237 GRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 237 ~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
.+.|+.++|..+|+.. ...|+.. ....+..-.-.++++-+|..+|-++....|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 4556666666666554 3333322 33333333444555666666666666666665543
No 479
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.27 E-value=69 Score=22.68 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCcc
Q 012539 351 YNEIEVMLGEISRRLKLAGYVANTNPV 377 (461)
Q Consensus 351 ~~~~~~~~~~l~~~m~~~g~~pd~~~~ 377 (461)
..++++.+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456677788888999999999996543
No 480
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.14 E-value=1.9e+02 Score=19.62 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
++...++.++..++...-.++++..+.+....|. .+..+|..-+..++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445566666666666666667777776666653 34444544444433
No 481
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=7.9e+02 Score=26.85 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=16.4
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 240 (461)
.|++..|.+++.++.++.+-.++...|..+++.+...|
T Consensus 1244 ~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1244 LGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 34444444444444443344444444444444433333
No 482
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=28.85 E-value=2.5e+02 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=13.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
.++.-|...+++++|...+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555566666666666665553
No 483
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=3.7e+02 Score=22.94 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=24.4
Q ss_pred HHhcCCHHHHHHHHHhcCC------CCHHHHHHHHH-HHHhCCC--hHHHHHHHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKE------RNVYTWTSVIG-GLAMNGA--GEKSLELFSLMKQ 183 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 183 (461)
....|++++|..-++.+.+ +-...|..+.. +++.++. +-+|.-++.-+..
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 3445666666666655542 12234444443 4555443 3455555554443
No 484
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.87 E-value=1.8e+02 Score=28.18 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE-----------RDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
+...|+..++-.|++..|+++++.+.- -.+.++.-+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888999999999887641 134567777778888888888888887654
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.57 E-value=1.7e+02 Score=22.15 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=26.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
++..+...+..-.|.++++++.+.+..++..|....|..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444455556677777777776655666665555555555554
No 486
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=27.42 E-value=6e+02 Score=24.96 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 262 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
..|+.-|...|++.+|.+..+.+---.-.....+.+++.+..+.|+-.....++++.-+.|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 45666778888888888776665322222345788899999998887777777777666554
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.25 E-value=2.1e+02 Score=21.42 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCC
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKERNV--YTWTSVIGGLAMNG--AGEKSLELFSLMKQAGVR 187 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~ 187 (461)
.++.-|...|+.++|...++++..|+. ..-..++......+ .-+.+..++..+...+..
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 456677777888888888888765521 12222333333331 223445555666555433
No 488
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.25 E-value=3.6e+02 Score=28.32 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.+-..++-.|....+++..+++.+.+++
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 3445566666677777777777777765
No 489
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.03 E-value=2.5e+02 Score=20.39 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=9.5
Q ss_pred HhhcCcHHHHHHHHHHhh
Q 012539 200 CCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~ 217 (461)
....|..++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344555555555555544
No 490
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.97 E-value=46 Score=26.28 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=23.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 012539 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 99 (461)
..|.-..|-.+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667889999999999988875 45555543
No 491
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.85 E-value=2.4e+02 Score=28.87 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 148 (461)
+.....-++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.++|+......+-+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444455555666666666665555544332111 1233444555556666555444433
No 492
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.74 E-value=8.3e+02 Score=26.34 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=116.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCcCHH-------HHHHHHH-HHhccCCHHHHHHHHHHHHHc----CCCCchHHHHHHH
Q 012539 64 YAQCGKSREALHLFHLMQIHDVKLNEV-------SMVSVLS-ACTHLGALDQGRWAHVYIERN----RLKMTVTLGTALV 131 (461)
Q Consensus 64 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-------t~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li 131 (461)
.....++.+|..+..++...-..|+.. .++.+-. .....|+++.+..+-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 346788999999988876542222221 2322221 224567888888887776653 2234456667778
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CCHH---HHHHHHHH--HHhCCC--hHHHHHHHHHHHHc--CCCC----CHHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE----RNVY---TWTSVIGG--LAMNGA--GEKSLELFSLMKQA--GVRP----NEVTFV 194 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~----~~~~---~~~~li~~--~~~~g~--~~~A~~~~~~m~~~--g~~p----~~~~~~ 194 (461)
.+..-.|++++|..+.....+ -++. .|..+..+ +-.+|+ ..+....|...... +-+| -.-++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999888776653 2443 44444332 455663 23333344433221 1111 123444
Q ss_pred HHHHHHhhc-CcHHHHHHHHHHhhhhcCCccChhH--HHHHHHHHHhcCCHHHHHHHHHhC---CCCC----CHHHHHHH
Q 012539 195 SVLRGCCVV-GLVEEGREHFDSMRREYGIEPWLEH--YGCLVDLYGRAGRLDEALDVINKM---PMKP----HAGAWGAL 264 (461)
Q Consensus 195 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~---~~~p----~~~~~~~l 264 (461)
.++.++.+. +...++..-+..-.. ....|-..- +..|+..+...|++++|...++++ ...+ +...-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555555541 222222222222211 122222222 236778888899999999988887 1112 22222222
Q ss_pred HHH--HHhcCChHHHHHHHHH
Q 012539 265 LNA--CRMYKNTEMGELASRK 283 (461)
Q Consensus 265 l~~--~~~~~~~~~a~~~~~~ 283 (461)
+.. ....||.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 3466777777666555
No 493
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.47 E-value=9e+02 Score=26.66 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHc
Q 012539 28 AMISACAKCGDVDLARKMFDEMP-------ERDPIAWNAMLAGYAQC 67 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~ 67 (461)
+.+.-+...+++.+|..+.++-. ..|+..|-.=+..++++
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~q 745 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQ 745 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHh
Confidence 45566778899999998877532 23555555555555554
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.17 E-value=4.2e+02 Score=22.74 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc-hHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHG-AYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
..+.++..|...||++.|-++|.-+.+..+-|.. .|..=+..+.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 4556666677777777777777777765544333 34444445555555444445555554
No 495
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.75 E-value=2.6e+02 Score=20.25 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=15.8
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 152 (461)
.|...--.+...+...|++++|.+.+-.+.+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555566666666666655555443
No 496
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.69 E-value=6.3e+02 Score=24.56 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERN--RLKMT-VTLGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
...+++...-+|+.....++.+.+.+. |-.|. ..+| -+.-+|.-.|++.+|.++|-.+
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY-~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTY-QVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEee-ehhHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444444444331 11121 1122 2344555556666666655443
No 497
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.63 E-value=1.2e+02 Score=21.46 Aligned_cols=15 Identities=13% Similarity=0.543 Sum_probs=8.7
Q ss_pred HHHcCCHHHHHHHHh
Q 012539 33 CAKCGDVDLARKMFD 47 (461)
Q Consensus 33 ~~~~g~~~~A~~~~~ 47 (461)
.++.|+++-...+++
T Consensus 4 A~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE 18 (89)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 345566666666655
No 498
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.26 E-value=4.5e+02 Score=22.80 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHCCCCc----CHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcC
Q 012539 71 REALHLFHLMQIHDVKL----NEVSMV-SVLSACTHLGALDQGRWAHVYIERNR 119 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p----~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~ 119 (461)
..|++.|.+..+..-.| +..+.. .+.....+.|+.++|.+.+..++..+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45666666555433221 222222 23344566777777777777776654
No 499
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=24.70 E-value=33 Score=25.43 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=9.9
Q ss_pred ccccCccCCCCC
Q 012539 449 HFKEGKCSCKGY 460 (461)
Q Consensus 449 ~~~~g~~s~~~~ 460 (461)
-.+.|.|||.+|
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 667889999875
No 500
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.56 E-value=1.7e+02 Score=25.77 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=34.6
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 236 YGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 236 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
..+.|+.+.|.+++.+. ...| ....|-.+...--+.|+.+.|.+.+++..+++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44556666666666655 3333 344666666666666667777777777777666654
Done!