Query 012539
Match_columns 461
No_of_seqs 614 out of 3394
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.4E-30 1.5E-34 260.6 38.2 318 2-322 127-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-31 8.7E-36 269.7 22.0 360 2-374 94-514 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.4E-30 1.2E-34 252.9 24.2 183 55-238 27-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.6E-28 5.6E-33 241.0 22.8 200 71-271 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-24 5.9E-29 207.5 37.1 313 2-321 9-334 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.4E-24 2.2E-28 203.5 33.9 312 2-321 43-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.7E-22 5.7E-27 197.4 33.2 290 2-299 36-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 4.6E-22 1.6E-26 194.2 33.1 306 10-321 10-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 3.1E-21 1.1E-25 191.4 29.9 316 2-320 16-477 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 1.5E-19 5E-24 170.4 36.4 295 22-321 2-335 (359)
11 3ieg_A DNAJ homolog subfamily 99.9 3.3E-19 1.1E-23 168.0 31.1 295 2-304 13-352 (359)
12 3fp2_A TPR repeat-containing p 99.9 3E-19 1E-23 178.4 31.1 316 2-322 35-492 (537)
13 3hym_B Cell division cycle pro 99.9 7.9E-19 2.7E-23 163.5 29.9 286 20-308 19-321 (330)
14 2gw1_A Mitochondrial precursor 99.9 5.2E-19 1.8E-23 175.4 29.8 294 23-321 6-401 (514)
15 1fch_A Peroxisomal targeting s 99.8 5.2E-19 1.8E-23 167.7 25.0 281 32-316 34-354 (368)
16 3hym_B Cell division cycle pro 99.8 2.9E-18 1E-22 159.7 28.0 264 52-320 20-298 (330)
17 4eqf_A PEX5-related protein; a 99.8 2.1E-18 7.3E-23 163.5 23.3 261 53-317 64-352 (365)
18 1b89_A Protein (clathrin heavy 99.8 2.6E-20 8.8E-25 175.1 9.2 283 3-315 14-305 (449)
19 3fp2_A TPR repeat-containing p 99.8 1.6E-17 5.5E-22 165.7 27.8 295 22-322 24-408 (537)
20 3mkr_A Coatomer subunit epsilo 99.8 1.3E-16 4.3E-21 146.2 31.1 270 31-314 7-287 (291)
21 1b89_A Protein (clathrin heavy 99.8 2.3E-19 7.8E-24 168.7 10.1 250 35-315 15-266 (449)
22 1fch_A Peroxisomal targeting s 99.8 1.3E-17 4.6E-22 157.9 22.2 276 36-321 14-314 (368)
23 3cv0_A Peroxisome targeting si 99.8 2.1E-17 7E-22 153.7 23.0 258 56-318 23-312 (327)
24 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.6E-22 158.0 19.8 231 88-321 64-310 (365)
25 3mkr_A Coatomer subunit epsilo 99.8 1.3E-16 4.3E-21 146.2 23.1 247 61-322 6-265 (291)
26 3cv0_A Peroxisome targeting si 99.7 7.5E-17 2.6E-21 149.9 20.0 263 22-289 20-317 (327)
27 4g1t_A Interferon-induced prot 99.7 1.7E-15 5.7E-20 148.7 28.1 323 2-331 61-469 (472)
28 3spa_A Mtrpol, DNA-directed RN 99.7 1E-17 3.5E-22 169.6 9.8 128 120-248 123-258 (1134)
29 3spa_A Mtrpol, DNA-directed RN 99.7 8.4E-18 2.9E-22 170.2 9.0 147 23-169 127-286 (1134)
30 2xm6_A Protein corresponding t 99.7 5E-14 1.7E-18 139.0 34.9 304 5-323 56-398 (490)
31 2xm6_A Protein corresponding t 99.7 3.8E-14 1.3E-18 139.9 33.6 304 5-323 92-434 (490)
32 3uq3_A Heat shock protein STI1 99.7 2.1E-15 7.1E-20 135.0 19.8 94 55-150 6-105 (258)
33 3uq3_A Heat shock protein STI1 99.7 7.1E-15 2.4E-19 131.5 23.3 220 89-321 5-236 (258)
34 2pl2_A Hypothetical conserved 99.7 9.4E-15 3.2E-19 127.7 20.8 194 121-318 2-211 (217)
35 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-14 3.9E-19 131.6 21.6 241 66-315 17-269 (275)
36 2ooe_A Cleavage stimulation fa 99.6 2.4E-13 8E-18 135.6 31.2 315 4-322 24-455 (530)
37 3u4t_A TPR repeat-containing p 99.6 3.4E-14 1.2E-18 128.4 21.8 250 25-303 5-266 (272)
38 2pl2_A Hypothetical conserved 99.6 5E-14 1.7E-18 123.0 21.3 193 53-252 4-211 (217)
39 1xi4_A Clathrin heavy chain; a 99.6 5.3E-13 1.8E-17 139.7 30.9 280 2-316 1059-1340(1630)
40 2h6f_A Protein farnesyltransfe 99.6 7.1E-14 2.4E-18 132.4 22.4 246 53-304 96-365 (382)
41 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7.1E-18 123.1 24.0 214 2-218 13-249 (272)
42 2ooe_A Cleavage stimulation fa 99.6 6.7E-13 2.3E-17 132.3 29.8 313 3-321 57-492 (530)
43 1ouv_A Conserved hypothetical 99.6 9.3E-13 3.2E-17 119.2 27.7 226 53-291 5-255 (273)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.4E-14 2.9E-18 125.8 20.0 238 35-281 17-269 (275)
45 2ho1_A Type 4 fimbrial biogene 99.6 4.3E-13 1.5E-17 119.6 24.4 204 54-292 37-243 (252)
46 1xi4_A Clathrin heavy chain; a 99.6 8.1E-13 2.8E-17 138.3 29.4 281 4-314 1088-1377(1630)
47 2q7f_A YRRB protein; TPR, prot 99.6 6.2E-14 2.1E-18 124.2 18.4 172 126-300 59-235 (243)
48 2ho1_A Type 4 fimbrial biogene 99.6 5E-13 1.7E-17 119.2 24.3 195 23-219 37-238 (252)
49 2vq2_A PILW, putative fimbrial 99.6 6.7E-13 2.3E-17 115.8 24.2 204 54-292 8-216 (225)
50 2vq2_A PILW, putative fimbrial 99.6 4.3E-13 1.5E-17 117.1 22.8 200 121-322 5-212 (225)
51 3sf4_A G-protein-signaling mod 99.6 1.6E-13 5.4E-18 131.4 21.1 263 57-320 12-335 (406)
52 1ouv_A Conserved hypothetical 99.6 2.1E-12 7.2E-17 116.8 27.4 224 88-323 5-253 (273)
53 4a1s_A PINS, partner of inscut 99.6 1.5E-13 5.2E-18 132.1 20.3 265 56-321 50-372 (411)
54 3ro2_A PINS homolog, G-protein 99.6 1.5E-13 5E-18 127.7 19.0 263 58-321 9-332 (338)
55 4g1t_A Interferon-induced prot 99.6 4.1E-12 1.4E-16 124.4 29.9 295 22-321 50-401 (472)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.3E-18 121.1 18.1 198 122-322 21-223 (243)
57 3sf4_A G-protein-signaling mod 99.5 1.7E-13 5.9E-18 131.1 18.3 290 20-309 6-364 (406)
58 3e4b_A ALGK; tetratricopeptide 99.5 9.7E-14 3.3E-18 135.2 16.3 305 3-323 14-353 (452)
59 2h6f_A Protein farnesyltransfe 99.5 5.6E-13 1.9E-17 126.2 19.8 226 89-320 97-347 (382)
60 4a1s_A PINS, partner of inscut 99.5 2.8E-13 9.5E-18 130.2 16.5 266 25-290 50-375 (411)
61 4abn_A Tetratricopeptide repea 99.5 3.8E-13 1.3E-17 131.9 16.9 208 105-318 84-318 (474)
62 3ro2_A PINS homolog, G-protein 99.5 1.6E-12 5.4E-17 120.6 19.0 267 24-290 6-335 (338)
63 2ond_A Cleavage stimulation fa 99.5 2.2E-11 7.4E-16 112.3 25.5 218 71-292 33-275 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 7.6E-12 2.6E-16 105.8 20.5 165 154-321 4-170 (184)
65 2ond_A Cleavage stimulation fa 99.5 1.9E-11 6.5E-16 112.7 24.5 227 23-252 8-267 (308)
66 3ulq_A Response regulator aspa 99.5 2.8E-12 9.5E-17 122.2 19.4 224 96-320 110-367 (383)
67 3e4b_A ALGK; tetratricopeptide 99.5 8.3E-12 2.8E-16 121.6 22.9 308 2-324 45-390 (452)
68 3nf1_A KLC 1, kinesin light ch 99.5 5E-13 1.7E-17 122.9 13.5 128 91-218 71-223 (311)
69 3ulq_A Response regulator aspa 99.5 4.9E-12 1.7E-16 120.5 20.2 287 3-289 23-370 (383)
70 3nf1_A KLC 1, kinesin light ch 99.4 5E-13 1.7E-17 122.9 12.0 229 92-320 30-306 (311)
71 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-11 5.6E-16 103.8 20.3 160 22-183 4-169 (184)
72 1hz4_A MALT regulatory protein 99.4 5.1E-10 1.7E-14 105.9 30.2 261 60-320 20-321 (373)
73 3q15_A PSP28, response regulat 99.4 3E-11 1E-15 114.8 20.5 299 21-320 8-364 (378)
74 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5E-16 120.6 18.1 207 38-252 83-318 (474)
75 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-11 5.5E-16 125.4 17.5 159 156-319 10-172 (723)
76 3q15_A PSP28, response regulat 99.3 1.9E-10 6.6E-15 109.2 22.6 285 3-287 23-365 (378)
77 3as5_A MAMA; tetratricopeptide 99.3 7.5E-11 2.6E-15 99.1 17.2 162 124-320 8-172 (186)
78 3as5_A MAMA; tetratricopeptide 99.3 4E-10 1.4E-14 94.6 21.6 157 24-182 9-171 (186)
79 4i17_A Hypothetical protein; T 99.3 2.1E-10 7.1E-15 100.5 20.0 203 87-301 5-223 (228)
80 1hz4_A MALT regulatory protein 99.3 6E-10 2.1E-14 105.4 23.6 264 26-290 17-325 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.2 2.7E-10 9.1E-15 116.4 19.2 158 23-183 9-173 (723)
82 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.4E-15 104.3 15.5 153 66-218 13-197 (283)
83 4i17_A Hypothetical protein; T 99.2 3.4E-10 1.2E-14 99.2 16.8 188 122-321 5-209 (228)
84 1qqe_A Vesicular transport pro 99.2 5.5E-10 1.9E-14 102.0 16.8 135 38-183 32-186 (292)
85 3edt_B KLC 2, kinesin light ch 99.2 1.2E-09 4.1E-14 98.4 18.8 130 54-183 43-197 (283)
86 1qqe_A Vesicular transport pro 99.1 1.1E-08 3.7E-13 93.4 22.1 209 69-292 32-274 (292)
87 3mv2_B Coatomer subunit epsilo 99.1 1.2E-08 4.2E-13 92.0 20.7 138 108-251 85-236 (310)
88 3qky_A Outer membrane assembly 99.1 1.1E-08 3.9E-13 91.4 20.6 207 121-368 12-248 (261)
89 3qky_A Outer membrane assembly 99.1 8.2E-09 2.8E-13 92.4 18.8 185 87-293 13-230 (261)
90 2fo7_A Synthetic consensus TPR 99.1 1E-08 3.6E-13 80.7 16.8 126 56-183 3-131 (136)
91 3mv2_B Coatomer subunit epsilo 99.1 1.2E-08 4E-13 92.1 18.6 175 143-322 85-283 (310)
92 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.1E-08 1.1E-12 86.5 20.3 183 124-324 4-216 (225)
93 2fo7_A Synthetic consensus TPR 99.0 9.4E-09 3.2E-13 81.0 14.8 129 157-320 3-131 (136)
94 2pzi_A Probable serine/threoni 99.0 1.8E-09 6E-14 110.6 12.6 168 135-307 402-583 (681)
95 3urz_A Uncharacterized protein 99.0 2.5E-08 8.7E-13 85.9 17.3 130 129-263 59-195 (208)
96 3qou_A Protein YBBN; thioredox 99.0 3.3E-08 1.1E-12 89.8 18.1 175 140-319 102-282 (287)
97 3urz_A Uncharacterized protein 99.0 3.1E-08 1.1E-12 85.3 17.0 154 28-183 9-185 (208)
98 4e6h_A MRNA 3'-END-processing 98.9 7.4E-07 2.5E-11 90.1 28.4 199 123-322 342-571 (679)
99 2pzi_A Probable serine/threoni 98.9 3.2E-08 1.1E-12 101.2 18.9 187 100-293 402-608 (681)
100 4ga2_A E3 SUMO-protein ligase 98.9 8.8E-10 3E-14 89.7 5.8 136 167-307 9-149 (150)
101 2r5s_A Uncharacterized protein 98.9 3.4E-08 1.2E-12 82.6 14.7 155 25-182 8-171 (176)
102 3qou_A Protein YBBN; thioredox 98.9 1.1E-07 3.7E-12 86.4 19.0 160 89-250 117-279 (287)
103 3rjv_A Putative SEL1 repeat pr 98.9 1.3E-07 4.3E-12 81.7 18.5 161 154-323 17-199 (212)
104 2ifu_A Gamma-SNAP; membrane fu 98.9 8.3E-08 2.8E-12 88.1 18.4 219 67-313 4-253 (307)
105 3dra_A Protein farnesyltransfe 98.9 2.7E-06 9.3E-11 77.3 27.5 229 66-300 44-301 (306)
106 3rjv_A Putative SEL1 repeat pr 98.9 1.9E-07 6.6E-12 80.6 19.0 168 42-218 5-196 (212)
107 2vsy_A XCC0866; transferase, g 98.8 4.5E-08 1.5E-12 98.2 15.7 159 137-299 2-169 (568)
108 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.8E-07 9.5E-12 80.3 18.9 184 88-292 3-218 (225)
109 2vsy_A XCC0866; transferase, g 98.8 7.4E-08 2.5E-12 96.6 17.0 147 102-252 2-154 (568)
110 4ga2_A E3 SUMO-protein ligase 98.8 2E-08 6.9E-13 81.6 10.4 60 57-117 34-93 (150)
111 2r5s_A Uncharacterized protein 98.8 5.5E-08 1.9E-12 81.3 13.2 156 127-319 9-171 (176)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4E-07 1.4E-11 78.3 18.4 145 127-291 9-154 (213)
113 4e6h_A MRNA 3'-END-processing 98.8 6.2E-07 2.1E-11 90.7 22.1 243 55-302 303-584 (679)
114 3dra_A Protein farnesyltransfe 98.8 2.4E-06 8.3E-11 77.6 23.7 214 103-320 47-286 (306)
115 3u3w_A Transcriptional activat 98.8 1.5E-06 5.1E-11 79.0 21.9 160 161-320 81-265 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.5E-07 1.2E-11 78.6 16.7 143 25-184 8-150 (213)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 1.5E-07 5.1E-12 86.4 15.1 220 36-279 4-253 (307)
118 2qfc_A PLCR protein; TPR, HTH, 98.8 5.1E-07 1.7E-11 82.2 18.4 165 156-320 76-265 (293)
119 2c2l_A CHIP, carboxy terminus 98.7 6.7E-08 2.3E-12 87.5 12.1 190 124-321 4-199 (281)
120 3gyz_A Chaperone protein IPGC; 98.7 3.8E-08 1.3E-12 79.9 8.9 102 221-322 30-134 (151)
121 3u3w_A Transcriptional activat 98.7 5.8E-07 2E-11 81.8 17.2 202 12-218 34-265 (293)
122 4gco_A Protein STI-1; structur 98.7 2.1E-07 7.3E-12 72.9 11.8 108 192-301 15-124 (126)
123 3gw4_A Uncharacterized protein 98.7 2.7E-07 9.2E-12 78.6 13.2 147 35-181 4-173 (203)
124 1a17_A Serine/threonine protei 98.6 6.7E-07 2.3E-11 73.3 13.9 126 193-320 16-145 (166)
125 4gco_A Protein STI-1; structur 98.6 2.6E-07 8.7E-12 72.5 10.7 100 222-321 8-110 (126)
126 2uy1_A Cleavage stimulation fa 98.6 9.3E-06 3.2E-10 79.4 23.8 302 6-318 28-380 (493)
127 2qfc_A PLCR protein; TPR, HTH, 98.6 1.9E-06 6.6E-11 78.3 17.8 125 56-181 77-222 (293)
128 3gw4_A Uncharacterized protein 98.6 3.3E-07 1.1E-11 78.0 11.5 149 2-150 2-173 (203)
129 1a17_A Serine/threonine protei 98.6 1.7E-06 5.9E-11 70.7 15.4 93 55-149 14-106 (166)
130 1na0_A Designed protein CTPR3; 98.6 9.3E-07 3.2E-11 68.2 13.0 112 192-305 11-124 (125)
131 2vgx_A Chaperone SYCD; alterna 98.6 2.1E-07 7.2E-12 75.3 9.0 97 225-321 20-118 (148)
132 2vyi_A SGTA protein; chaperone 98.5 1E-06 3.5E-11 68.6 12.2 115 192-308 14-130 (131)
133 3q7a_A Farnesyltransferase alp 98.5 7.3E-05 2.5E-09 68.7 25.9 179 57-241 57-257 (349)
134 2lni_A Stress-induced-phosphop 98.5 9.7E-07 3.3E-11 69.2 11.7 80 227-306 51-132 (133)
135 3gyz_A Chaperone protein IPGC; 98.5 8E-07 2.7E-11 71.9 11.1 85 98-183 45-132 (151)
136 1p5q_A FKBP52, FK506-binding p 98.5 9.7E-07 3.3E-11 82.0 12.9 144 154-319 146-292 (336)
137 1na0_A Designed protein CTPR3; 98.5 4.2E-06 1.4E-10 64.4 14.7 26 56-81 11-36 (125)
138 4f3v_A ESX-1 secretion system 98.5 1.7E-06 5.8E-11 76.9 13.7 180 35-218 18-236 (282)
139 2c2l_A CHIP, carboxy terminus 98.5 5.1E-07 1.8E-11 81.6 10.4 188 90-287 5-199 (281)
140 4f3v_A ESX-1 secretion system 98.5 3.5E-06 1.2E-10 74.9 15.4 131 161-296 108-245 (282)
141 2vyi_A SGTA protein; chaperone 98.5 4E-06 1.4E-10 65.2 14.0 92 56-149 14-105 (131)
142 2kck_A TPR repeat; tetratricop 98.5 1.7E-06 5.7E-11 65.4 11.3 99 225-323 5-108 (112)
143 3dss_A Geranylgeranyl transfer 98.5 7.5E-05 2.6E-09 68.3 23.9 230 65-302 40-319 (331)
144 2e2e_A Formate-dependent nitri 98.5 1.4E-06 4.9E-11 72.5 11.6 117 66-184 22-144 (177)
145 2lni_A Stress-induced-phosphop 98.5 3.9E-06 1.3E-10 65.6 13.6 95 54-150 16-110 (133)
146 2e2e_A Formate-dependent nitri 98.5 5.9E-07 2E-11 74.8 9.2 118 203-322 23-145 (177)
147 2xcb_A PCRH, regulatory protei 98.5 1.2E-06 4.1E-11 70.1 10.5 96 226-321 18-115 (142)
148 1p5q_A FKBP52, FK506-binding p 98.4 3.4E-06 1.2E-10 78.3 14.9 144 53-218 146-293 (336)
149 2fbn_A 70 kDa peptidylprolyl i 98.4 2E-07 6.9E-12 79.4 5.5 172 129-321 9-186 (198)
150 3upv_A Heat shock protein STI1 98.4 1.8E-06 6.3E-11 67.2 10.6 95 227-321 5-101 (126)
151 2vgx_A Chaperone SYCD; alterna 98.4 2.5E-06 8.6E-11 68.8 11.6 94 124-218 21-117 (148)
152 2fbn_A 70 kDa peptidylprolyl i 98.4 9E-07 3.1E-11 75.3 8.9 161 29-210 10-176 (198)
153 3q7a_A Farnesyltransferase alp 98.4 7E-05 2.4E-09 68.8 21.4 215 102-320 67-330 (349)
154 3q49_B STIP1 homology and U bo 98.4 4.1E-06 1.4E-10 66.1 11.7 97 225-321 8-106 (137)
155 1elw_A TPR1-domain of HOP; HOP 98.4 7.9E-06 2.7E-10 62.1 12.6 73 227-299 39-113 (118)
156 3sz7_A HSC70 cochaperone (SGT) 98.3 3.5E-06 1.2E-10 69.1 10.5 100 191-293 12-114 (164)
157 1hxi_A PEX5, peroxisome target 98.3 2.6E-06 8.8E-11 66.1 9.0 94 228-321 19-114 (121)
158 2dba_A Smooth muscle cell asso 98.3 1.4E-05 4.8E-10 63.7 13.7 107 193-302 31-143 (148)
159 1elw_A TPR1-domain of HOP; HOP 98.3 6E-06 2.1E-10 62.8 11.0 97 226-322 4-102 (118)
160 2dba_A Smooth muscle cell asso 98.3 8.5E-06 2.9E-10 65.0 12.0 97 225-321 27-128 (148)
161 4gcn_A Protein STI-1; structur 98.3 1.3E-05 4.5E-10 62.6 12.7 60 56-116 10-69 (127)
162 4b4t_Q 26S proteasome regulato 98.3 2.4E-05 8.3E-10 75.0 17.2 97 156-252 136-242 (434)
163 1wao_1 Serine/threonine protei 98.3 1.4E-05 4.7E-10 78.0 15.4 117 130-250 12-134 (477)
164 4b4t_Q 26S proteasome regulato 98.3 0.00023 7.9E-09 68.1 24.0 189 30-218 11-244 (434)
165 2xcb_A PCRH, regulatory protei 98.3 7.5E-06 2.6E-10 65.4 11.0 99 195-295 23-123 (142)
166 3upv_A Heat shock protein STI1 98.3 8.8E-06 3E-10 63.3 11.1 104 195-300 9-120 (126)
167 3sz7_A HSC70 cochaperone (SGT) 98.2 2.8E-05 9.7E-10 63.6 14.1 91 126-217 13-106 (164)
168 2uy1_A Cleavage stimulation fa 98.2 0.00037 1.3E-08 68.1 24.3 200 106-320 196-412 (493)
169 4gcn_A Protein STI-1; structur 98.2 4.5E-06 1.5E-10 65.3 8.6 93 228-320 10-111 (127)
170 3dss_A Geranylgeranyl transfer 98.2 0.00072 2.5E-08 61.7 23.6 217 101-321 41-304 (331)
171 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.7E-10 60.2 10.4 94 54-149 6-102 (112)
172 3q49_B STIP1 homology and U bo 98.2 1.7E-05 5.8E-10 62.4 11.2 99 190-290 9-109 (137)
173 1elr_A TPR2A-domain of HOP; HO 98.2 2.5E-05 8.6E-10 60.5 12.0 29 155-183 79-107 (131)
174 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.7E-10 61.2 11.3 95 56-151 6-106 (131)
175 2xev_A YBGF; tetratricopeptide 98.2 1E-05 3.4E-10 63.0 9.3 89 232-320 8-104 (129)
176 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.5E-10 64.2 10.4 27 56-82 11-37 (164)
177 1hxi_A PEX5, peroxisome target 98.1 2.2E-05 7.4E-10 60.7 10.3 92 57-150 20-111 (121)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.2E-05 1.1E-09 75.0 13.7 95 226-320 317-414 (457)
179 2hr2_A Hypothetical protein; a 98.1 1.3E-05 4.3E-10 64.5 9.0 62 260-321 59-131 (159)
180 3ro3_A PINS homolog, G-protein 98.1 3.5E-05 1.2E-09 62.1 12.0 136 156-320 10-157 (164)
181 1wao_1 Serine/threonine protei 98.1 9.6E-06 3.3E-10 79.1 9.1 112 202-316 18-134 (477)
182 2xev_A YBGF; tetratricopeptide 98.0 7.4E-05 2.5E-09 58.0 12.3 94 198-294 10-112 (129)
183 3rkv_A Putative peptidylprolyl 98.0 1.9E-05 6.5E-10 64.5 9.0 63 259-321 64-126 (162)
184 3k9i_A BH0479 protein; putativ 98.0 5E-06 1.7E-10 63.9 5.1 61 260-320 29-89 (117)
185 1ihg_A Cyclophilin 40; ppiase 98.0 4E-05 1.4E-09 72.0 11.7 136 156-313 224-362 (370)
186 2hr2_A Hypothetical protein; a 97.9 2.5E-05 8.5E-10 62.8 7.8 70 228-297 59-141 (159)
187 2if4_A ATFKBP42; FKBP-like, al 97.9 2.7E-05 9.3E-10 72.2 9.3 148 155-322 179-329 (338)
188 3n71_A Histone lysine methyltr 97.9 5.6E-05 1.9E-09 73.4 11.8 124 199-322 318-465 (490)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 1.6E-05 5.3E-10 73.9 7.3 113 192-321 181-293 (338)
190 1ihg_A Cyclophilin 40; ppiase 97.9 8.5E-05 2.9E-09 69.8 12.4 119 24-144 224-361 (370)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.0001 3.5E-09 71.4 13.4 142 53-217 267-413 (457)
192 1dce_A Protein (RAB geranylger 97.9 0.0011 3.9E-08 65.8 19.7 167 141-310 46-244 (567)
193 3rkv_A Putative peptidylprolyl 97.8 0.00021 7.3E-09 58.1 12.0 110 54-189 11-129 (162)
194 3k9i_A BH0479 protein; putativ 97.8 2.1E-05 7E-10 60.3 5.4 89 204-293 4-96 (117)
195 3n71_A Histone lysine methyltr 97.8 0.00019 6.6E-09 69.6 12.5 93 126-218 353-463 (490)
196 3ma5_A Tetratricopeptide repea 97.7 0.00016 5.4E-09 53.6 8.7 65 257-321 6-70 (100)
197 2l6j_A TPR repeat-containing p 97.7 6.5E-05 2.2E-09 56.5 6.4 90 226-315 4-101 (111)
198 2l6j_A TPR repeat-containing p 97.7 5E-05 1.7E-09 57.1 5.4 95 54-150 4-104 (111)
199 1na3_A Designed protein CTPR2; 97.7 0.00024 8.1E-09 51.0 8.8 80 226-305 9-90 (91)
200 2kat_A Uncharacterized protein 97.6 0.00017 5.7E-09 54.8 7.8 77 245-321 4-82 (115)
201 1klx_A Cysteine rich protein B 97.5 0.0033 1.1E-07 49.5 14.0 109 69-185 10-127 (138)
202 1na3_A Designed protein CTPR2; 97.5 0.0014 4.8E-08 46.8 10.4 79 55-135 10-88 (91)
203 1klx_A Cysteine rich protein B 97.4 0.0014 4.8E-08 51.7 11.0 88 234-323 33-128 (138)
204 1zu2_A Mitochondrial import re 97.4 0.0001 3.5E-09 59.1 3.7 49 274-322 62-121 (158)
205 3bee_A Putative YFRE protein; 97.4 0.0012 4.2E-08 47.9 9.3 69 256-324 4-75 (93)
206 3qwp_A SET and MYND domain-con 97.4 0.0003 1E-08 67.2 7.2 116 233-366 294-427 (429)
207 1dce_A Protein (RAB geranylger 97.3 0.015 5E-07 57.7 19.3 165 70-241 45-241 (567)
208 2kat_A Uncharacterized protein 97.3 0.0011 3.7E-08 50.2 8.5 75 108-183 4-81 (115)
209 3ma5_A Tetratricopeptide repea 97.3 0.0017 5.7E-08 47.8 9.2 59 124-182 7-68 (100)
210 1zu2_A Mitochondrial import re 97.3 0.00059 2E-08 54.7 6.7 56 141-198 63-132 (158)
211 3mkq_A Coatomer beta'-subunit; 97.0 0.049 1.7E-06 56.5 20.3 42 34-77 610-652 (814)
212 3qww_A SET and MYND domain-con 97.0 0.001 3.4E-08 63.5 6.7 83 238-320 310-410 (433)
213 1wy6_A Hypothetical protein ST 97.0 0.08 2.7E-06 40.4 17.7 141 165-324 17-157 (172)
214 3ly7_A Transcriptional activat 96.9 0.034 1.2E-06 51.1 15.8 138 152-291 191-343 (372)
215 3mkq_B Coatomer subunit alpha; 96.9 0.078 2.7E-06 43.0 15.9 104 31-151 13-116 (177)
216 3qww_A SET and MYND domain-con 96.8 0.0068 2.3E-07 57.7 10.9 92 202-293 310-422 (433)
217 3qwp_A SET and MYND domain-con 96.8 0.011 3.9E-07 56.3 12.4 98 197-294 294-412 (429)
218 3mkq_A Coatomer beta'-subunit; 96.8 0.052 1.8E-06 56.3 18.5 116 5-145 612-728 (814)
219 2kc7_A BFR218_protein; tetratr 96.6 0.0053 1.8E-07 44.6 6.9 52 268-319 10-62 (99)
220 2kc7_A BFR218_protein; tetratr 96.6 0.0095 3.3E-07 43.2 8.3 64 232-295 6-72 (99)
221 3ly7_A Transcriptional activat 96.5 0.041 1.4E-06 50.5 13.4 72 153-229 275-346 (372)
222 1pc2_A Mitochondria fission pr 96.5 0.023 8E-07 44.9 10.3 65 256-320 30-99 (152)
223 3mkq_B Coatomer subunit alpha; 96.4 0.11 3.6E-06 42.2 13.8 129 132-284 13-141 (177)
224 3lvg_A Clathrin heavy chain 1; 95.9 1.6E-06 5.5E-11 81.1 -19.4 263 22-313 53-325 (624)
225 2v5f_A Prolyl 4-hydroxylase su 95.8 0.045 1.6E-06 40.3 8.4 70 229-298 8-86 (104)
226 3bee_A Putative YFRE protein; 95.5 0.066 2.3E-06 38.5 8.0 67 224-290 4-75 (93)
227 3u64_A Protein TP_0956; tetrat 95.3 0.079 2.7E-06 46.7 8.9 87 242-328 179-276 (301)
228 1pc2_A Mitochondria fission pr 95.0 0.3 1E-05 38.5 10.6 26 158-183 74-99 (152)
229 1qsa_A Protein (soluble lytic 94.4 4.4 0.00015 40.3 26.6 54 233-286 292-347 (618)
230 1nzn_A CGI-135 protein, fissio 94.4 0.33 1.1E-05 36.8 9.3 95 196-292 7-108 (126)
231 2v5f_A Prolyl 4-hydroxylase su 94.1 0.48 1.7E-05 34.6 9.6 62 57-118 8-75 (104)
232 3u64_A Protein TP_0956; tetrat 93.7 0.48 1.7E-05 41.8 10.1 117 34-152 132-268 (301)
233 4gns_B Protein CSD3, chitin bi 93.5 0.82 2.8E-05 46.4 12.9 52 268-319 347-398 (754)
234 1wy6_A Hypothetical protein ST 93.0 2.4 8.3E-05 32.5 13.6 139 66-223 19-157 (172)
235 1nzn_A CGI-135 protein, fissio 92.9 1.1 3.8E-05 34.0 9.7 90 166-258 12-107 (126)
236 4fhn_B Nucleoporin NUP120; pro 91.8 5.2 0.00018 43.2 17.3 163 28-208 817-989 (1139)
237 4h7y_A Dual specificity protei 91.7 0.68 2.3E-05 36.2 7.4 53 272-324 74-126 (161)
238 4h7y_A Dual specificity protei 91.6 3.8 0.00013 32.0 11.5 36 52-88 11-52 (161)
239 3txn_A 26S proteasome regulato 91.4 8.3 0.00028 35.8 15.9 128 90-217 20-166 (394)
240 3ffl_A Anaphase-promoting comp 90.5 1.7 5.7E-05 34.6 8.8 112 130-255 26-151 (167)
241 4gns_B Protein CSD3, chitin bi 90.3 1.6 5.5E-05 44.3 10.7 121 59-181 253-397 (754)
242 3lvg_A Clathrin heavy chain 1; 89.9 0.0025 8.5E-08 60.0 -9.1 148 124-283 54-224 (624)
243 2p58_C Putative type III secre 89.7 4.2 0.00014 29.1 9.1 86 104-194 22-107 (116)
244 4ady_A RPN2, 26S proteasome re 89.4 22 0.00077 37.0 18.5 215 33-252 384-620 (963)
245 3ltm_A Alpha-REP4; protein eng 89.4 8.2 0.00028 31.9 20.1 49 20-68 30-78 (211)
246 2uwj_G Type III export protein 89.3 3.9 0.00013 29.2 8.7 86 104-194 21-106 (115)
247 2ff4_A Probable regulatory pro 89.1 3.3 0.00011 38.5 11.3 70 158-228 174-247 (388)
248 2ff4_A Probable regulatory pro 89.0 1.2 4.2E-05 41.5 8.3 68 261-328 174-246 (388)
249 4b4t_P 26S proteasome regulato 88.9 16 0.00054 34.6 16.1 183 68-252 30-244 (445)
250 1y8m_A FIS1; mitochondria, unk 88.7 7 0.00024 30.2 13.4 46 275-320 59-105 (144)
251 4b4t_P 26S proteasome regulato 88.5 17 0.00058 34.4 20.2 185 37-225 30-253 (445)
252 3ffl_A Anaphase-promoting comp 88.2 6.4 0.00022 31.3 10.5 122 28-162 25-162 (167)
253 1v54_E Cytochrome C oxidase po 88.1 3.1 0.00011 29.9 7.7 55 245-299 32-86 (109)
254 3lpz_A GET4 (YOR164C homolog); 88.1 15 0.0005 33.1 22.8 168 25-218 37-215 (336)
255 4ady_A RPN2, 26S proteasome re 87.9 28 0.00096 36.2 19.5 253 4-261 386-664 (963)
256 1v54_E Cytochrome C oxidase po 87.8 3.4 0.00012 29.7 7.7 63 170-234 25-87 (109)
257 3ltj_A Alpharep-4; protein eng 86.6 12 0.00041 30.5 20.5 87 14-104 19-105 (201)
258 2wpv_A GET4, UPF0363 protein Y 86.2 18 0.00061 32.3 22.5 169 25-219 35-217 (312)
259 3lpz_A GET4 (YOR164C homolog); 86.2 19 0.00064 32.4 22.1 167 126-320 37-215 (336)
260 2p58_C Putative type III secre 86.1 4.3 0.00015 29.0 7.5 59 31-92 48-106 (116)
261 2uwj_G Type III export protein 85.6 4 0.00014 29.1 7.1 60 31-93 47-106 (115)
262 3o48_A Mitochondria fission 1 85.1 8.2 0.00028 29.4 9.2 30 263-292 83-112 (134)
263 4fhn_B Nucleoporin NUP120; pro 84.3 21 0.00072 38.5 15.7 112 128-242 846-987 (1139)
264 2wpv_A GET4, UPF0363 protein Y 83.8 23 0.00079 31.5 20.0 168 126-320 35-216 (312)
265 3ltm_A Alpha-REP4; protein eng 82.0 20 0.00068 29.4 18.9 167 38-217 17-183 (211)
266 4b4t_R RPN7, 26S proteasome re 81.1 36 0.0012 31.9 15.2 56 127-182 134-195 (429)
267 2y69_E Cytochrome C oxidase su 81.1 8.6 0.00029 29.3 7.7 62 171-234 69-130 (152)
268 2y69_E Cytochrome C oxidase su 80.5 9.1 0.00031 29.1 7.7 56 244-299 74-129 (152)
269 1zbp_A Hypothetical protein VP 78.9 30 0.001 30.0 11.6 118 164-292 6-134 (273)
270 2qx5_A Nucleoporin NIC96; mRNA 75.4 36 0.0012 34.0 12.8 87 235-325 452-568 (661)
271 2nsz_A Programmed cell death p 71.5 23 0.0008 26.7 8.3 65 127-191 10-79 (129)
272 3mv2_A Coatomer subunit alpha; 69.8 59 0.002 28.9 11.4 56 253-322 200-257 (325)
273 1zbp_A Hypothetical protein VP 69.5 10 0.00035 32.9 6.4 57 235-291 6-64 (273)
274 4b4t_R RPN7, 26S proteasome re 68.2 63 0.0022 30.2 12.4 96 157-252 133-234 (429)
275 3esl_A Checkpoint serine/threo 65.9 55 0.0019 26.9 10.3 101 244-370 62-168 (202)
276 2ion_A PDCD4, programmed cell 65.3 20 0.0007 28.0 6.9 65 127-191 12-81 (152)
277 1wdy_A 2-5A-dependent ribonucl 64.1 23 0.00078 30.4 8.1 23 28-50 7-29 (285)
278 1y8m_A FIS1; mitochondria, unk 62.5 51 0.0017 25.4 10.6 33 86-118 36-71 (144)
279 1wdy_A 2-5A-dependent ribonucl 61.1 39 0.0013 28.8 9.0 81 3-88 13-99 (285)
280 4gq2_M Nucleoporin NUP120; bet 58.3 1.6E+02 0.0053 31.0 14.2 127 29-169 816-950 (950)
281 3o48_A Mitochondria fission 1 55.6 65 0.0022 24.4 10.4 74 185-259 35-112 (134)
282 3ltj_A Alpharep-4; protein eng 54.5 82 0.0028 25.2 20.2 163 42-217 16-178 (201)
283 2nsz_A Programmed cell death p 54.3 52 0.0018 24.8 7.4 61 26-86 10-75 (129)
284 2d2s_A Exocyst complex compone 50.8 72 0.0024 27.0 8.4 23 60-82 24-46 (235)
285 4b4t_S RPN3, 26S proteasome re 47.7 2E+02 0.0067 27.6 14.0 61 124-184 231-299 (523)
286 2ion_A PDCD4, programmed cell 46.4 45 0.0015 26.0 6.0 61 26-86 12-77 (152)
287 1n11_A Ankyrin; clathrin, BAND 45.5 96 0.0033 28.6 9.5 295 4-324 23-336 (437)
288 2l0z_A Glycoprotein G2; zinc-b 45.4 7.2 0.00025 22.3 0.9 15 446-460 14-29 (42)
289 1oyz_A Hypothetical protein YI 45.2 1.4E+02 0.0049 25.3 23.8 48 21-68 35-82 (280)
290 4a1g_A Mitotic checkpoint seri 45.2 1.1E+02 0.0037 23.9 9.3 50 276-325 83-134 (152)
291 2k0q_A Putative uncharacterize 44.4 6.2 0.00021 25.8 0.5 22 437-458 8-29 (74)
292 3esl_A Checkpoint serine/threo 43.4 1.4E+02 0.0046 24.6 11.4 82 141-224 61-148 (202)
293 2d2s_A Exocyst complex compone 43.1 96 0.0033 26.2 8.0 28 224-251 89-116 (235)
294 3eiq_C Programmed cell death p 42.2 2E+02 0.0068 26.1 15.8 29 25-53 56-84 (358)
295 2fe3_A Peroxide operon regulat 42.1 69 0.0024 24.5 6.5 59 80-139 13-71 (145)
296 2zu6_B Programmed cell death p 40.9 1.9E+02 0.0065 25.5 13.9 27 26-52 6-32 (307)
297 3txn_A 26S proteasome regulato 39.9 2.3E+02 0.0077 26.1 29.3 283 25-324 21-346 (394)
298 2wvi_A Mitotic checkpoint seri 38.7 1.4E+02 0.0049 23.5 9.4 49 277-325 79-129 (164)
299 3ygs_P Procaspase 9; apoptosis 38.5 37 0.0013 24.0 4.1 38 37-74 51-88 (97)
300 2zu6_B Programmed cell death p 38.1 2.1E+02 0.0072 25.2 13.1 65 260-324 168-234 (307)
301 1qsa_A Protein (soluble lytic 38.0 3E+02 0.01 27.1 25.2 169 139-320 229-409 (618)
302 3kea_A K1L; tropism, ANK repea 37.9 1.9E+02 0.0066 24.7 10.1 182 132-327 36-223 (285)
303 2lo3_A SAGA-associated factor 37.8 8 0.00027 22.3 0.3 12 416-427 15-26 (44)
304 2xig_A Ferric uptake regulatio 37.7 97 0.0033 23.9 6.8 60 80-140 18-77 (150)
305 3hra_A Ankyrin repeat family p 35.8 96 0.0033 24.6 7.0 19 32-50 11-29 (201)
306 4gq2_M Nucleoporin NUP120; bet 35.5 4.1E+02 0.014 27.8 13.3 48 192-240 899-950 (950)
307 3ygs_P Procaspase 9; apoptosis 34.7 51 0.0017 23.3 4.3 38 138-175 51-88 (97)
308 3ljn_A Hypothetical protein; a 34.1 57 0.0019 29.3 5.7 219 21-252 16-267 (364)
309 2fe3_A Peroxide operon regulat 32.5 1.3E+02 0.0044 23.0 6.7 63 179-243 11-73 (145)
310 3bu8_A Telomeric repeat-bindin 31.9 1.5E+02 0.005 24.7 6.8 21 232-252 120-140 (235)
311 3kae_A CDC27, possible protein 31.8 2E+02 0.0068 23.0 9.3 77 36-114 46-139 (242)
312 2ijq_A Hypothetical protein; s 31.8 1.9E+02 0.0064 22.7 7.8 52 167-218 44-103 (161)
313 2pk8_A Uncharacterized protein 31.1 31 0.0011 24.0 2.4 47 349-403 13-59 (103)
314 2xig_A Ferric uptake regulatio 31.0 1.8E+02 0.0061 22.3 7.6 62 180-243 17-78 (150)
315 2yru_A Steroid receptor RNA ac 30.5 80 0.0027 23.4 4.8 43 76-118 48-90 (118)
316 1bpo_A Protein (clathrin); cla 30.3 3.6E+02 0.012 25.5 13.1 139 102-253 342-483 (494)
317 2r9g_A AAA ATPase, central reg 30.2 2.3E+02 0.0077 23.2 9.3 63 57-120 14-84 (204)
318 4ets_A Ferric uptake regulatio 29.5 85 0.0029 24.7 5.2 69 71-140 14-85 (162)
319 1ug3_A EIF4GI, eukaryotic prot 29.2 2.6E+02 0.0089 25.0 9.1 61 26-86 14-78 (339)
320 3bqo_A Telomeric repeat-bindin 29.0 1.1E+02 0.0039 24.9 5.7 42 39-80 94-143 (211)
321 1n11_A Ankyrin; clathrin, BAND 28.5 3.1E+02 0.011 25.0 10.0 234 28-282 16-266 (437)
322 3hra_A Ankyrin repeat family p 27.6 1.9E+02 0.0066 22.7 7.5 16 134-149 12-27 (201)
323 4ets_A Ferric uptake regulatio 27.4 1.5E+02 0.0052 23.2 6.4 71 172-243 14-86 (162)
324 3eyy_A Putative iron uptake re 27.3 1.1E+02 0.0039 23.3 5.5 34 106-139 34-67 (145)
325 1mzb_A Ferric uptake regulatio 27.0 1.5E+02 0.0053 22.2 6.2 60 80-140 9-69 (136)
326 4b4t_S RPN3, 26S proteasome re 26.6 1.8E+02 0.0063 27.9 7.7 63 190-252 231-296 (523)
327 3eu9_A Huntingtin-interacting 26.4 1.4E+02 0.0047 24.3 6.5 53 265-318 181-233 (240)
328 1oyz_A Hypothetical protein YI 26.2 3E+02 0.01 23.2 23.0 181 48-242 31-222 (280)
329 4aez_C MAD3, mitotic spindle c 25.4 2.9E+02 0.01 23.0 8.0 51 275-325 131-183 (223)
330 2o03_A Probable zinc uptake re 25.1 1.2E+02 0.004 22.7 5.1 45 59-103 15-59 (131)
331 1k1a_A B-cell lymphoma 3-encod 24.5 2.3E+02 0.0078 23.0 7.6 182 59-250 11-204 (241)
332 4a1g_A Mitotic checkpoint seri 23.1 2.6E+02 0.009 21.6 10.4 77 141-224 52-134 (152)
333 2b7e_A PRE-mRNA processing pro 22.5 39 0.0013 21.4 1.5 30 70-99 2-31 (59)
334 2qq8_A TBC1 domain family memb 22.3 1.8E+02 0.0061 26.0 6.6 43 177-219 215-257 (334)
335 2p1h_A APAF-1, apoptotic prote 22.3 2E+02 0.0067 19.8 7.0 38 137-174 49-86 (94)
336 1ug3_A EIF4GI, eukaryotic prot 22.2 3.4E+02 0.012 24.1 8.5 61 128-188 15-79 (339)
337 3l6a_A Eukaryotic translation 22.1 4.4E+02 0.015 23.8 11.6 61 128-189 16-82 (364)
338 4aez_C MAD3, mitotic spindle c 22.1 3.4E+02 0.012 22.6 9.0 52 172-224 131-183 (223)
339 2qx5_A Nucleoporin NIC96; mRNA 22.0 5.9E+02 0.02 25.3 17.9 32 226-257 533-569 (661)
340 2w57_A Ferric uptake regulatio 21.9 1.3E+02 0.0046 23.1 5.0 61 79-140 7-68 (150)
341 3qye_A TBC1 domain family memb 21.5 4.2E+02 0.014 23.3 10.1 127 69-202 164-306 (331)
342 3eiq_C Programmed cell death p 20.9 3E+02 0.01 24.9 7.7 68 57-125 220-289 (358)
343 1mzb_A Ferric uptake regulatio 20.8 2.7E+02 0.0091 20.8 6.5 60 181-242 9-69 (136)
344 3bge_A Predicted ATPase; struc 20.7 3.5E+02 0.012 22.1 8.9 46 58-103 8-56 (201)
345 3ljn_A Hypothetical protein; a 20.5 3.3E+02 0.011 24.0 8.2 82 234-317 178-266 (364)
346 3mwm_A ZUR, putative metal upt 20.3 1E+02 0.0036 23.3 4.0 41 61-101 20-60 (139)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-30 Score=260.56 Aligned_cols=318 Identities=12% Similarity=0.025 Sum_probs=258.9
Q ss_pred ccccCCchHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC-CC------------------ChhHHHHH
Q 012539 2 YAELGCLGYCQKVFDGI--HEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ER------------------DPIAWNAM 60 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~------------------~~~~~~~l 60 (461)
|.+.|++++|..+|+.+ ..+++.+++.++.+|.+.|++++|.++|+++. .. ++.+|+.+
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 55677788888888777 35677788888888888888888888887433 22 36778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-------------------------------------------------------
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDV------------------------------------------------------- 85 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~------------------------------------------------------- 85 (461)
+.+|.+.|++++|+++|++|.+.+.
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 8888888888888888877754321
Q ss_pred ---------------CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------------------------------
Q 012539 86 ---------------KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL------------------------------ 120 (461)
Q Consensus 86 ---------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------------ 120 (461)
+++..++..++.++.+.|++++|..+++++.+.+.
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 15666777777777777888888777777765432
Q ss_pred ---CCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 012539 121 ---KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194 (461)
Q Consensus 121 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 194 (461)
+.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++.
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 3456788888899999999999999999875 3467899999999999999999999999998753 44788899
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHH
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-------PMKPH--AGAWGALL 265 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll 265 (461)
.++.+|.+.|++++|.++|+.+.+. .+.++.+|..++..|.+.|++++|.++|+++ +..|+ ..+|..+.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 9999999999999999999998753 2346788999999999999999999999887 44677 67999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+|...|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.5e-31 Score=269.71 Aligned_cols=360 Identities=11% Similarity=-0.045 Sum_probs=299.4
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|.+.|++++|..+|+++. .||..++..++.+|.+.|++++|..+|+++. .+++.+|+.++.+|.+.|++++|+++|
T Consensus 94 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 173 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL 173 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 567899999999999875 4888999999999999999999999999984 568999999999999999999999999
Q ss_pred HHHHHC---------------CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHH--------------
Q 012539 78 HLMQIH---------------DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT-------------- 128 (461)
Q Consensus 78 ~~m~~~---------------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------- 128 (461)
+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+. .+...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~ 252 (597)
T 2xpi_A 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEW 252 (597)
T ss_dssp CSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHH
T ss_pred hccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHH
Confidence 854322 2244688999999999999999999999999998752 2333333
Q ss_pred ------------------------HHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 129 ------------------------ALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 129 ------------------------~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 235667788999999999999987 799999999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 012539 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGA 260 (461)
Q Consensus 183 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 260 (461)
+.+ +.+..++..++.++...|+.++|..+++.+.+. .+.+..++..++.+|.+.|++++|.++|+++ ...| +..+
T Consensus 333 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 409 (597)
T 2xpi_A 333 EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409 (597)
T ss_dssp HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence 864 336778899999999999999999999999753 3456889999999999999999999999988 3334 5779
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEE
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHE 340 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~ 340 (461)
|+.++.++.+.|++++|..+|+++.+..|++..+|..++.+|.+.|++++|.++++++.+.... ....|..+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l------ 481 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLLLNEL------ 481 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999999999999875432 11122111
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCC
Q 012539 341 FFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374 (461)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~ 374 (461)
...+...++.+++...+.++.....+.+..|+.
T Consensus 482 -~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 482 -GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -HHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 112234567777777777666665555777774
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.4e-30 Score=252.89 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCchH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA---------LDQGRWAHVYIERNRLKMTVT 125 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 125 (461)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777788888888888888888888888888888888888888776543 577788888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMK----ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
+||+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888776 36788888888888888888888888888888888888888888888888
Q ss_pred hcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh
Q 012539 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 238 (461)
+.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 888888888888888654 888888888888877765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.6e-28 Score=240.98 Aligned_cols=200 Identities=14% Similarity=0.156 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---------H
Q 012539 71 REALHLFHLMQIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN---------M 140 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 140 (461)
..+..+.+++.+.++.+.+. .++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556667787777666544 6888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 141 NKAMDFFWGMK----ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 141 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 271 (461)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 875 99999999999999999999999999999999 7889999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.7e-24 Score=207.49 Aligned_cols=313 Identities=14% Similarity=0.110 Sum_probs=237.9
Q ss_pred ccccCCchHHHHHHhcCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EP-DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
+.+.|++++|.+.++.+. .| +...+..+...+.+.|++++|...++...+ .+..+|+.+...|.+.|++++|++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 346788888888887764 23 456677777788888888888888876542 356788888888888888888888
Q ss_pred HHHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 012539 76 LFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 152 (461)
.|+++.+. .| +..+|..+..++...|++++|...+..+.+.. |.+..++..+...|...|++++|.+.|+++..
T Consensus 89 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 89 HYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 88888774 34 45578888888888888888888888888765 44556677788888888888888888887763
Q ss_pred -CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHH
Q 012539 153 -RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYG 230 (461)
Q Consensus 153 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 230 (461)
.+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+.+..+. .| +..++.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHH
Confidence 356788888888888888888888888887742 223566777777777888888888888777642 44 366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCCh
Q 012539 231 CLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 308 (461)
.+...|.+.|++++|...|+++ ...| +..+|..+...+...|++++|...++++.+..|++..++..++.++...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 7888888888888888888776 3344 3557777777788888888888888888888888777888888888888888
Q ss_pred hHHHHHHHHHHhC
Q 012539 309 DRVINVRQIMKAK 321 (461)
Q Consensus 309 ~~a~~~~~~m~~~ 321 (461)
++|.+.++++.+.
T Consensus 322 ~~A~~~~~~al~~ 334 (388)
T 1w3b_A 322 EEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
Confidence 8888888877653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=6.4e-24 Score=203.53 Aligned_cols=312 Identities=12% Similarity=0.054 Sum_probs=276.7
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|...++... ..+..+|..+...|.+.|++++|...|+++.+ | ++.+|..+..++.+.|++++|++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 456799999999998764 35788999999999999999999999998753 3 56789999999999999999999
Q ss_pred HHHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 012539 76 LFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 152 (461)
.|+++.+.. | +...+..+...+...|++++|...+.++.+.. +.+..+++.+...|.+.|++++|...|+++..
T Consensus 123 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 199 (388)
T 1w3b_A 123 AYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199 (388)
T ss_dssp HHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999853 4 45567778888999999999999999999875 55678899999999999999999999998873
Q ss_pred -CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHH
Q 012539 153 -RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHY 229 (461)
Q Consensus 153 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 229 (461)
.+...|..+...+...|++++|+..|++.... .| +..++..+..++...|++++|...|+.+.+. .| ++.++
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 274 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAY 274 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHH
Confidence 46788999999999999999999999999885 44 4788899999999999999999999999753 44 57889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM-PM-KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
..+...|.+.|++++|...++++ .. .++..+|..+...+...|++++|...++++.+..|++..++..++.+|.+.|+
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999988 22 34677999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 012539 308 WDRVINVRQIMKAK 321 (461)
Q Consensus 308 ~~~a~~~~~~m~~~ 321 (461)
+++|.+.++++.+.
T Consensus 355 ~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 355 LQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998763
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.7e-22 Score=197.42 Aligned_cols=290 Identities=13% Similarity=0.038 Sum_probs=213.5
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|+.+|+.+. ..+..+|..+..+|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+.
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788888888887764 24677788888888888888888888887653 356678888888888888888888
Q ss_pred HHHHHHHCCCCcCH----HHHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 76 LFHLMQIHDVKLNE----VSMVSV------------LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 76 ~~~~m~~~~~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
.|+++.+. .|+. .++..+ ...+...|++++|...+..+.+.. +.+..++..++.+|.+.|+
T Consensus 116 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 116 DFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC
Confidence 88888764 3433 344433 334777788888888888887764 4567777778888888888
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHhhc
Q 012539 140 MNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSV------------LRGCCVV 203 (461)
Q Consensus 140 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l------------l~~~~~~ 203 (461)
+++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++... .|+ ...+..+ ...+...
T Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888887753 46778888888888888888888888888764 344 3333333 6677778
Q ss_pred CcHHHHHHHHHHhhhhcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPW-----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
|++++|..+|+.+.+. .|+ ..++..+..++.+.|++++|...++++ ...| +..+|..+..+|...|++++
T Consensus 271 g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 271 GRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 8888888888887653 343 346777788888888888888888776 3334 56678888888888888888
Q ss_pred HHHHHHHHhhccCCCcchHHHHH
Q 012539 277 GELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
|...++++.++.|.++.++..+.
T Consensus 348 A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHHHHHHHH
Confidence 88888888888888877777777
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.6e-22 Score=194.25 Aligned_cols=306 Identities=12% Similarity=0.055 Sum_probs=255.7
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 10 YCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 10 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
.+...+..... .++.+|..++..|.+.|++++|+.+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34445555442 3567899999999999999999999998753 46889999999999999999999999999986
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch---HHHHHH------------HHHHHhcCCHHHHHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTAL------------VDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~ 148 (461)
+ +.+..++..+..++...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 3467889999999999999999999999999865 3344 555555 445899999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 149 GMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 149 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
.+.+ .+..++..++.+|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~ 243 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQD 243 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 8763 478899999999999999999999999998752 446889999999999999999999999999753 444
Q ss_pred -hhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 226 -LEHYGCL------------VDLYGRAGRLDEALDVINKM-PMKPH-----AGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 226 -~~~~~~l------------i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
...+..+ ...+.+.|++++|...|+++ ...|+ ...|..+...+...|++++|...++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445444 78899999999999999988 33454 34788888899999999999999999999
Q ss_pred ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 287 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999774
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.1e-21 Score=191.44 Aligned_cols=316 Identities=10% Similarity=-0.021 Sum_probs=199.0
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
|.+.|++++|+..|+++. .||+.+|..+..+|.+.|++++|...|+++.+ .++.+|..+..+|...|++++|+..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 467899999999998875 48899999999999999999999999997653 3567899999999999999999999
Q ss_pred HHHHHHCCCC----------------------------------------------------------------------
Q 012539 77 FHLMQIHDVK---------------------------------------------------------------------- 86 (461)
Q Consensus 77 ~~~m~~~~~~---------------------------------------------------------------------- 86 (461)
|+++...+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 9888765420
Q ss_pred -------cC-HHHHHHHHHHHh---ccCCHHHHHHHHHHHHH-----cCC--------CCchHHHHHHHHHHHhcCCHHH
Q 012539 87 -------LN-EVSMVSVLSACT---HLGALDQGRWAHVYIER-----NRL--------KMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 87 -------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~ 142 (461)
|+ ...+......+. +.|++++|...+.++.+ ... +.+..++..+...|...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 00 112222222222 25667777776666665 210 1234455556666666666666
Q ss_pred HHHHHHhcCC--C----------------------------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 012539 143 AMDFFWGMKE--R----------------------------------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186 (461)
Q Consensus 143 A~~~~~~~~~--~----------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 186 (461)
|...|+.+.+ | +..+|..+...|...|++++|+..|+++.+..
T Consensus 256 A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 334 (514)
T 2gw1_A 256 AHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD- 334 (514)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 6666655431 2 33445555555555666666666666555532
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----H
Q 012539 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----A 258 (461)
Q Consensus 187 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~ 258 (461)
+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ +..++ .
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence 223445555555666666666666666665542 1223455666666666666666666666555 11122 2
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 259 GAWGALLNACRM---YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 259 ~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..|..+...+.. .|++++|...++++.+..|.+..++..++.+|...|++++|.+.+++..+
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 256666666666 66666666666666666666666666666666666666666666666655
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.5e-19 Score=170.42 Aligned_cols=295 Identities=12% Similarity=0.050 Sum_probs=245.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
|+..+..+...+.+.|++++|...|+++.+ .++.+|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 567788889999999999999999998653 367789999999999999999999999998853 2366788889999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCC--CchHHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLK--MTVTLGTAL------------VDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSV 161 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 161 (461)
+...|++++|...+..+.+.... .+...+..+ ...+...|++++|.+.|+.+. ..+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999886520 345555545 588899999999999999876 3477889999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHH----------
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYG---------- 230 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~---------- 230 (461)
...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHH
Confidence 999999999999999999998752 446788888999999999999999999998753 333 33332
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 231 --CLVDLYGRAGRLDEALDVINKM-PMKPHAG-----AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 231 --~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
.+...+.+.|++++|...++++ ...|+.. .+..+...+...|++++|...++++.+..|+++.++..++.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2366789999999999999887 3334432 3445667799999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 012539 303 AESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|.+.+++..+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.3e-19 Score=168.01 Aligned_cols=295 Identities=12% Similarity=0.015 Sum_probs=247.6
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|...|+++. ..++.+|..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHH
Confidence 457899999999999875 34688999999999999999999999998753 367899999999999999999999
Q ss_pred HHHHHHHCCCCc----CHHHHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 76 LFHLMQIHDVKL----NEVSMVSV------------LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 76 ~~~~m~~~~~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
.|+++.+. .| +...+..+ ...+...|++++|...+..+.+.. +.+..++..+...|...|+
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 93 DFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 99999885 34 33444444 577889999999999999999875 5678889999999999999
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHhhc
Q 012539 140 MNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFV------------SVLRGCCVV 203 (461)
Q Consensus 140 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~ 203 (461)
+++|...|+.... .+..+|..+...|...|++++|...|++..+. .|+ ...+. .+...+...
T Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998764 47789999999999999999999999999875 343 33332 235668889
Q ss_pred CcHHHHHHHHHHhhhhcCCccC-h----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPW-L----EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
|++++|...++.+.+. .|+ . ..+..+...|...|++++|...+++. ...| +..+|..+...+...|++++
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 248 GRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999998764 343 2 33556788999999999999999988 3345 66789999999999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
|...++++.+..|++...+..+..++..
T Consensus 325 A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 325 AIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999998888877766543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3e-19 Score=178.35 Aligned_cols=316 Identities=10% Similarity=0.028 Sum_probs=248.1
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|++.|+++. ..++.+|..+..+|.+.|++++|+..|+++.+ .++.+|..+...+...|++++|+.
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 457899999999998875 24788899999999999999999999998653 367788889999999999888888
Q ss_pred HHHHHHHC------------------------------------------------------------------------
Q 012539 76 LFHLMQIH------------------------------------------------------------------------ 83 (461)
Q Consensus 76 ~~~~m~~~------------------------------------------------------------------------ 83 (461)
.|+.+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp HHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 77432100
Q ss_pred -----------------------------------CCCcC--------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 012539 84 -----------------------------------DVKLN--------EVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120 (461)
Q Consensus 84 -----------------------------------~~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 120 (461)
...|+ ..++..+...+...|++++|...+..+.+..
T Consensus 195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~- 273 (537)
T 3fp2_A 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH- 273 (537)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 01122 1234455566677788888998888888864
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
|+..++..+...|...|++++|...|+.+.+ .+..+|..+...|...|++++|++.|+++.+.. +.+...+..+.
T Consensus 274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 274 -PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp -CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred -CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3477788888888999999999999987763 467889999999999999999999999998753 33467788888
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKP----HAGAWGALLNACR 269 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~ 269 (461)
..+...|++++|..+++.+.+. .+.+...+..+...|...|++++|...++++ +..+ ....+..+...+.
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 8999999999999999988764 2335678888999999999999999999886 1111 2223444455677
Q ss_pred hc----------CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 270 MY----------KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 270 ~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.. |++++|...++++.+..|++..++..++.+|...|++++|.+.+++..+..
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77 999999999999999999999999999999999999999999999987754
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=7.9e-19 Score=163.52 Aligned_cols=286 Identities=12% Similarity=0.050 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
..++..+..++..+...|++++|..+|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 35666778888899999999999999998753 355677888899999999999999999998854 33677888888
Q ss_pred HHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChH
Q 012539 97 SACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 97 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 172 (461)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999998875 55677888899999999999999999998763 35677888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC-------CccChhHHHHHHHHHHhcCCHHHH
Q 012539 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG-------IEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
+|++.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998752 34577888889999999999999999998876321 133467888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH-hhcCCh
Q 012539 246 LDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY-AESKNW 308 (461)
Q Consensus 246 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 308 (461)
...+++. ...| +...|..+...+...|++++|...++++.+..|+++.++..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999887 2233 5668888888999999999999999999999999998999998888 455554
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.2e-19 Score=175.44 Aligned_cols=294 Identities=10% Similarity=-0.034 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
...+..+...+.+.|++++|+..|+++. .|++.+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567788899999999999999999876 4788999999999999999999999999999864 346678999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC----------------------------------------------------------
Q 012539 101 HLGALDQGRWAHVYIERNRLKM---------------------------------------------------------- 122 (461)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------------------- 122 (461)
..|++++|...+..+.+.+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999998765311
Q ss_pred --------------------chHHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-CHHHHHHHH
Q 012539 123 --------------------TVTLGTALVDMYSK---CGNMNKAMDFFWGMKE----------------R-NVYTWTSVI 162 (461)
Q Consensus 123 --------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 162 (461)
+...+..+...+.. .|++++|...|+++.. | +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12333333444443 8999999999988755 2 356888999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
..+...|++++|+..|+++.+.. |+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999998864 44778888999999999999999999998752 233678899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|.+.++++.+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 3334 5668888989999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 012539 321 K 321 (461)
Q Consensus 321 ~ 321 (461)
.
T Consensus 401 ~ 401 (514)
T 2gw1_A 401 L 401 (514)
T ss_dssp H
T ss_pred h
Confidence 4
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=5.2e-19 Score=167.71 Aligned_cols=281 Identities=12% Similarity=-0.031 Sum_probs=226.1
Q ss_pred HHHHcCCHHHHHH-HHhhCCC---C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 32 ACAKCGDVDLARK-MFDEMPE---R----DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 32 ~~~~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
.+.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445688999998 8886542 1 35678899999999999999999999999864 347778999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHH---------------HHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTS---------------VIGGL 165 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~ 165 (461)
++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.. | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999999886 56788899999999999999999999998763 2 2222221 13334
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998853221 4788899999999999999999999998753 23357889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC-----------cchHHHHHHHHhhcCChhHH
Q 012539 245 ALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN-----------HGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 245 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 311 (461)
|...++++ ...| +..++..+...+...|++++|...++++.+..|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 56689999999999999999999999999988877 77899999999999999999
Q ss_pred HHHHH
Q 012539 312 INVRQ 316 (461)
Q Consensus 312 ~~~~~ 316 (461)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.9e-18 Score=159.68 Aligned_cols=264 Identities=9% Similarity=-0.005 Sum_probs=228.9
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 52 RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
.++..+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...+.++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467788889999999999999999999998864 3355566677888899999999999999999875 55678888899
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH
Q 012539 132 DMYSKCG-NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 132 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 207 (461)
..|...| ++++|...|++... .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 357889999999999999999999999998863 334667777889999999999
Q ss_pred HHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC-------CCCHHHHHHHHHHHHhcCChHH
Q 012539 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PM-------KPHAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~-------~p~~~~~~~ll~~~~~~~~~~~ 276 (461)
+|...++.+.+. .+.+...+..+...|...|++++|...++++ +. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999998752 2345788999999999999999999999877 10 2335688999999999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
|...++++.+..|.+..++..+..+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987654
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.1e-18 Score=163.49 Aligned_cols=261 Identities=9% Similarity=-0.062 Sum_probs=216.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+.++++.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45679999999999999999999999999864 3477899999999999999999999999999875 556888999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKERN-------------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR-PNEVTFVSVLR 198 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 198 (461)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887422 223445588899999999999999999886322 15788999999
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
.+...|++++|...|+.+.+. .+.+..++..+..+|.+.|++++|...|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998763 2345789999999999999999999999987 3345 46789999999999999999
Q ss_pred HHHHHHHHhhccCC------------CcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 277 GELASRKLVELETK------------NHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 277 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
|...++++.++.|. +...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 356899999999999999988877653
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.6e-20 Score=175.10 Aligned_cols=283 Identities=12% Similarity=0.094 Sum_probs=137.0
Q ss_pred cccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
-+.|++++|.+++++...| .+|+.|+.++.+.|++++|++.|.+. +|...|..++.++.+.|++++|+..++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3678899999999999555 59999999999999999999999764 5777999999999999999999997776666
Q ss_pred CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH
Q 012539 83 HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162 (461)
Q Consensus 83 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 162 (461)
. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+ ..|..|+
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 3 4567889999999999999999988774 467779999999999999999999999988 4899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999988 27899999999999999999996654432 23444556799999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHHhhccC-----CCcchHHHHHHHHhhcCChhHHHH
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMY--KNTEMGELASRKLVELET-----KNHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
++|..+++.. +..+ ....|+-|.-++++. ++..+..+.|..-..+.| .+...|..+...|.+.++++.|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999887 5444 455777776666655 344555555554444445 567899999999999999999887
Q ss_pred HH
Q 012539 314 VR 315 (461)
Q Consensus 314 ~~ 315 (461)
+.
T Consensus 304 tm 305 (449)
T 1b89_A 304 TM 305 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=1.6e-17 Score=165.71 Aligned_cols=295 Identities=12% Similarity=0.046 Sum_probs=240.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
....|..+...+.+.|++++|+..|+++.+ .++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 346788889999999999999999998753 478899999999999999999999999999864 3467789999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCch-------------------------------------H----------------
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTV-------------------------------------T---------------- 125 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------------------------~---------------- 125 (461)
+...|++++|...++. ......+.. .
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHH-HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999998863 321111100 0
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHhcCC--C-C-------HHHHHHHHHHHHhCCChHH
Q 012539 126 --------------LGTALVDMYSK--------CGNMNKAMDFFWGMKE--R-N-------VYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 126 --------------~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g~~~~ 173 (461)
....+...+.. .|++++|..+|+++.+ | + ..+|..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 22222222222 2478899999998875 3 2 2357777788999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012539 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM- 252 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 252 (461)
|+..|+++.+. .|+...+..+...+...|++++|...++.+.+. .+.+..++..+...|...|++++|...++++
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999885 566788888999999999999999999998763 2335788999999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 253 PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 253 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
...| +...|..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3334 456888899999999999999999999999999999999999999999999999999999987754
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.3e-16 Score=146.15 Aligned_cols=270 Identities=10% Similarity=-0.023 Sum_probs=215.9
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDP----IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD 106 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 106 (461)
.-....|+++.|+..++.....++ .....+..+|...|++++|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 344568999999999988765443 34566789999999999999877542 3567778888889999999999
Q ss_pred HHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 107 QGRWAHVYIERNRL-KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 107 ~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
+|.+.++.+...+. |.+..++..+...|.+.|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999988764 44667778888999999999999999998 568889999999999999999999999999885
Q ss_pred CCCCHHHH---HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 012539 186 VRPNEVTF---VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGA 260 (461)
Q Consensus 186 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 260 (461)
.|+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|...++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4664321 12334444569999999999999874 3557889999999999999999999999997 4445 5668
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHH
Q 012539 261 WGALLNACRMYKNTEM-GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 314 (461)
+..++..+...|+.++ +..+++++.+.+|+++.+ .....+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999999876 678999999999998743 3445555555555443
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.3e-19 Score=168.69 Aligned_cols=250 Identities=12% Similarity=0.069 Sum_probs=117.6
Q ss_pred HcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012539 35 KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (461)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999655 59999999999999999999999753 5788999999999999999999998887
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 012539 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194 (461)
Q Consensus 115 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 194 (461)
..+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 4557888999999999999999998886 477889999999999999999999999976 3688
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence 9999999999999999999877 26889999999999999999998776665444443 45688899999999
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhc--CChhHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAES--KNWDRVINVR 315 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 315 (461)
++|..+++....+++.....|+.|..+|++- ++..+..+.|
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999998888999998888765 3344444433
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.3e-17 Score=157.92 Aligned_cols=276 Identities=12% Similarity=-0.003 Sum_probs=203.9
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHH-HHHHHHHCCCC-c--CHHHHHHHHHHHhccCCHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH-LFHLMQIHDVK-L--NEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~-p--~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
.+.++.+...|+.+...+.. ++...|++++|++ .|++....... | +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555666665554433 3444588999998 88876653211 1 345677888999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 188 (461)
+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |
T Consensus 87 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 163 (368)
T 1fch_A 87 FEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--P 163 (368)
T ss_dssp HHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--T
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c
Confidence 99999875 5678888999999999999999999999876 3478899999999999999999999999998853 3
Q ss_pred CH-HHHHH---------------HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 189 NE-VTFVS---------------VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 189 ~~-~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+. ..+.. .+..+...|++++|...++.+.+...-.++..++..+...|.+.|++++|...++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 22211 233344889999999999999864222224788999999999999999999999987
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 253 -PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 253 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...| +..+|..+...+...|++++|...++++.+..|.+..++..++.+|.+.|++++|...+++..+.
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344 56789999999999999999999999999999999999999999999999999999999998764
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=2.1e-17 Score=153.68 Aligned_cols=258 Identities=9% Similarity=-0.074 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+.++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44455555555555555555555555432 2244455555555555555555555555555543 334455555555666
Q ss_pred hcCCHHHHHHHHHhcCCC---CHHHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 136 KCGNMNKAMDFFWGMKER---NVYTWTSV--------------IG-GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
..|++++|.+.|+++... +...+..+ .. .+...|++++|++.++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 666666666665554421 11122222 22 3667788889999998887753 33577788888
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 275 (461)
..+...|++++|...++.+.+. .+.+...+..+...|...|++++|...++++ ...| +..+|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 8888899999999999888753 2335678888899999999999999998887 3334 5668888888999999999
Q ss_pred HHHHHHHHHhhccCC------------CcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 276 MGELASRKLVELETK------------NHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
+|...++++.+..|. +..++..+..+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999988 6788999999999999999999988643
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.3e-17 Score=157.97 Aligned_cols=231 Identities=11% Similarity=-0.020 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGG 164 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 164 (461)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999876 56788999999999999999999999998763 468899999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPN-----------EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 233 (461)
|...|++++|++.|+++.+. .|+ ...+..+...+...|++++|..+++.+.+...-.+++.++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 333 12233457788899999999999999986522222578999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
..|.+.|++++|...++++ ...| +..+|..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 012539 312 INVRQIMKAK 321 (461)
Q Consensus 312 ~~~~~~m~~~ 321 (461)
...+++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.3e-16 Score=146.19 Aligned_cols=247 Identities=7% Similarity=-0.047 Sum_probs=203.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDVKLNE--VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999999887553 4443 4556778999999999999876643 24667888899999999999
Q ss_pred CHHHHHHHHHhcC----CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 012539 139 NMNKAMDFFWGMK----ER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213 (461)
Q Consensus 139 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (461)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|+.++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 23 567788888999999999999999997 456788889999999999999999999
Q ss_pred HHhhhhcCCccChhH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 214 DSMRREYGIEPWLEH---YGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 214 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
+.+.+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++...|++++|...++++.+.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999764 455321 123345555669999999999998 223467789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhcCChhH-HHHHHHHHHhCC
Q 012539 289 TKNHGAYVLLSNIYAESKNWDR-VINVRQIMKAKG 322 (461)
Q Consensus 289 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 322 (461)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578988887643
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=7.5e-17 Score=149.86 Aligned_cols=263 Identities=10% Similarity=0.016 Sum_probs=215.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
+...+..+...+.+.|++++|..+|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445677888899999999999999998753 367889999999999999999999999998864 3467788899999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHH--------------HH-HHHhcCCHHHHHHHHHhcCC---CCHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTAL--------------VD-MYSKCGNMNKAMDFFWGMKE---RNVYTWTS 160 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 160 (461)
+...|++++|...+..+.+.. +.+...+..+ .. .+...|++++|...|+++.+ .+..+|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999999865 3333333333 33 47788999999999998763 46789999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 240 (461)
+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998853 345778889999999999999999999998763 2335788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 241 RLDEALDVINKM-PMKPH-------------AGAWGALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
++++|...++++ ...|+ ..+|..+..++...|+.++|..++++..+..|
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999999887 22333 56888999999999999999999887765543
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.7e-15 Score=148.70 Aligned_cols=323 Identities=11% Similarity=-0.042 Sum_probs=219.0
Q ss_pred ccccCCchHHHHHHhcCC-----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC-----------CChhHHH
Q 012539 2 YAELGCLGYCQKVFDGIH-----------EP-DVVCQTAMISACAKCGDVDLARKMFDEMPE-----------RDPIAWN 58 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~ 58 (461)
|...|+.++|++.|++.. .| ...+|+.+..+|...|++++|...|++..+ ....+++
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 446799999999987642 22 457899999999999999999998886531 1345777
Q ss_pred HHHHHHHHc--CChHHHHHHHHHHHHCCCCcC-HHHHHHHHHH---HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 59 AMLAGYAQC--GKSREALHLFHLMQIHDVKLN-EVSMVSVLSA---CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 59 ~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+.+.++.. +.+..++..+..
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~ 217 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHH
Confidence 777677665 4689999999999884 454 4444444444 345677788999999988875 455666666665
Q ss_pred HHHh----cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhc-
Q 012539 133 MYSK----CGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVV- 203 (461)
Q Consensus 133 ~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~- 203 (461)
.+.. .|++++|.+.|++.. ..+..++..+...|...|++++|++.|++..+. .|+ ..++..+..+|...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 5554 467888999998765 356788999999999999999999999999885 444 56666665555332
Q ss_pred ------------------CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH----
Q 012539 204 ------------------GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGA---- 260 (461)
Q Consensus 204 ------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~---- 260 (461)
+..++|...+....+. -+.+...+..+...|...|++++|...|++. ...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3456777788777642 2334678888999999999999999999887 33454432
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHHHhhc------------------------cCCCcchHHHHHHHHhhcCChhHHHHHH
Q 012539 261 WGALLNA-CRMYKNTEMGELASRKLVEL------------------------ETKNHGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 261 ~~~ll~~-~~~~~~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
+..+... ....|+.++|+..++++.++ +|+++.+|..|..+|...|++++|++.|
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2333322 45678899998888877654 5677889999999999999999999999
Q ss_pred HHHHhCCCccCCcccE
Q 012539 316 QIMKAKGVKKLPGCSV 331 (461)
Q Consensus 316 ~~m~~~g~~~~~~~s~ 331 (461)
++..+.|-......+|
T Consensus 454 ~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 454 ERGLESGSLIPSASSW 469 (472)
T ss_dssp ----------------
T ss_pred HHHHhcCCCCCcHhhc
Confidence 9998876543334444
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=169.62 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=109.2
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 192 (461)
......+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456689999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCc-HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 193 FVSVLRGCCVVGL-VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 193 ~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
|++||.++++.|. .++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999887 57889999999876 9999999999998877776544444444
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=8.4e-18 Score=170.25 Aligned_cols=147 Identities=13% Similarity=0.105 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMP-------ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSV 95 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 95 (461)
..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999997753 579999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCC
Q 012539 96 LSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-----NVYTWTSVIGGLAMNG 169 (461)
Q Consensus 96 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 169 (461)
|.++++.|+ .++|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999998 4789999999999999999999999998877765555444443333321 1334445556666554
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=5e-14 Score=139.02 Aligned_cols=304 Identities=14% Similarity=0.017 Sum_probs=246.2
Q ss_pred cCCchHHHHHHhcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChHHHH
Q 012539 5 LGCLGYCQKVFDGIHE-PDVVCQTAMISACAK----CGDVDLARKMFDEMPER-DPIAWNAMLAGYAQ----CGKSREAL 74 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~ 74 (461)
.+++++|...|++..+ .++..+..|...|.. .+++++|...|++..+. ++..+..|...|.. .+++++|+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 6788899999887643 577888889999998 89999999999986544 67788888888888 78999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHH
Q 012539 75 HLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDF 146 (461)
Q Consensus 75 ~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 146 (461)
..|++..+.| +...+..+...+.. .++.++|...+.+..+.+ +...+..|..+|.. .++.++|.+.
T Consensus 136 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 136 KWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999988865 56677777777776 778999999999988875 56677788888888 8999999999
Q ss_pred HHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhh
Q 012539 147 FWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV----VGLVEEGREHFDSMR 217 (461)
Q Consensus 147 ~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 217 (461)
|+...+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..+|+...
T Consensus 210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 987664 467788888888886 789999999999988754 45566667777776 789999999999886
Q ss_pred hhcCCccChhHHHHHHHHHHhc-----CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhccC
Q 012539 218 REYGIEPWLEHYGCLVDLYGRA-----GRLDEALDVINKMPMKPHAGAWGALLNACRMYK---NTEMGELASRKLVELET 289 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p 289 (461)
+. + ++..+..|..+|... +++++|...+++.....+...+..+...+...| +.++|...++++.+.
T Consensus 287 ~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-- 360 (490)
T 2xm6_A 287 EQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-- 360 (490)
T ss_dssp TT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--
T ss_pred Hc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--
Confidence 53 2 456777788888887 899999999988733345667777777777655 788999999998876
Q ss_pred CCcchHHHHHHHHhh----cCChhHHHHHHHHHHhCCC
Q 012539 290 KNHGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 290 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 323 (461)
.++.++..|..+|.. .+++++|.+.+++..+.|.
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL 398 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 456788999999998 8999999999999888763
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=3.8e-14 Score=139.91 Aligned_cols=304 Identities=15% Similarity=-0.010 Sum_probs=258.3
Q ss_pred cCCchHHHHHHhcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChHHHH
Q 012539 5 LGCLGYCQKVFDGIHE-PDVVCQTAMISACAK----CGDVDLARKMFDEMPER-DPIAWNAMLAGYAQ----CGKSREAL 74 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~ 74 (461)
.++.++|.+.|++..+ .++..+..|...|.. .+++++|...|++..+. ++.++..|...|.. .+++++|+
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7899999999988754 578888889999998 89999999999987654 67889999999988 88999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHH
Q 012539 75 HLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDF 146 (461)
Q Consensus 75 ~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 146 (461)
+.|++..+.| +...+..+...+.. .++.++|...+.+..+.+ +...+..|..+|.. .+++++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998865 67788888888877 899999999999999875 45677778888886 8999999999
Q ss_pred HHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-----CcHHHHHHHHHHh
Q 012539 147 FWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV-----GLVEEGREHFDSM 216 (461)
Q Consensus 147 ~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~ 216 (461)
|+...+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+... ++.++|..+|+..
T Consensus 246 ~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 246 FSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 998764 567788888888888 899999999999998764 455666777777776 8999999999998
Q ss_pred hhhcCCccChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccC
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAG---RLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVELET 289 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p 289 (461)
.+. + +...+..|..+|...| ++++|.+.|++.-...++..+..|...|.. .+++++|...++++.+.+
T Consensus 323 ~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 323 AEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred Hhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 763 3 4567778888888766 789999999988334678888889888888 899999999999998865
Q ss_pred CCcchHHHHHHHHhh----cCChhHHHHHHHHHHhCCC
Q 012539 290 KNHGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 290 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 323 (461)
++.++..|..+|.. .+++++|...+++..+.+.
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 46789999999998 8999999999999988764
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-15 Score=134.98 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--c----hHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--T----VTLGT 128 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 128 (461)
..|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666655544 455555555555555555555555555554432100 0 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~ 150 (461)
.+...|.+.|++++|...|++.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 4444444444444444444443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.1e-15 Score=131.47 Aligned_cols=220 Identities=10% Similarity=-0.008 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-------HHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-N-------VYTW 158 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~ 158 (461)
..++..+...+...|++++|...+..+++.. .+..++..+...|...|++++|...|+...+ | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888889999999999999999999987 7788899999999999999999999998764 2 2 5789
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh
Q 012539 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 238 (461)
..+...|...|++++|++.|++..+. .|+. ..+...|++++|...++.+... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999884 4553 3456678999999999988752 23346788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 239 AGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 239 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
.|++++|...++++ ...| +..+|..+...+...|++++|...++++.+..|+++.+|..+..+|...|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999988 2233 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 012539 317 IMKAK 321 (461)
Q Consensus 317 ~m~~~ 321 (461)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=9.4e-15 Score=127.69 Aligned_cols=194 Identities=11% Similarity=0.019 Sum_probs=150.6
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 55667777788888888888888888887653 367788888888888999999999998888752 22466777888
Q ss_pred HHHhhc-----------CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012539 198 RGCCVV-----------GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGAL 264 (461)
Q Consensus 198 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 264 (461)
.++... |++++|...++...+. .| +...+..+..+|...|++++|...|++. ....+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999988753 45 4778888999999999999999999887 212677889999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
...+...|++++|...++++.+..|+++.++..+..++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=1.1e-14 Score=131.63 Aligned_cols=241 Identities=10% Similarity=-0.067 Sum_probs=179.6
Q ss_pred HcCChHHHHHHHHHHHHCCC--C-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 66 QCGKSREALHLFHLMQIHDV--K-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~--~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
..|++++|+..|+++.+... . .+..++..+...+...|++++|...+.++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888888876532 1 134567777778888888888888888888765 4567778888888888888888
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 143 AMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 143 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
|...|++... .+..+|..+...|...|++++|++.|+++.+. .|+.......+..+...|+.++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887763 36778888889999999999999999998874 455444444555566779999999999877653
Q ss_pred cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc
Q 012539 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 220 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
.+++...+ .++..+...++.++|...+++. ...|+ ..+|..+...+...|++++|...++++.+..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 4777778888888999988876 32232 467888888899999999999999999999987754
Q ss_pred hHHHHHHHHhhcCChhHHHHHH
Q 012539 294 AYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 55677888888887765
No 36
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=2.4e-13 Score=135.58 Aligned_cols=315 Identities=10% Similarity=-0.012 Sum_probs=222.8
Q ss_pred ccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhHHHHHHHH-HHHcCChHHHHH--
Q 012539 4 ELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAG-YAQCGKSREALH-- 75 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~-~~~~g~~~~A~~-- 75 (461)
+.|+++.|+.+|+++++ | +...|..++..+.+.|++++|..+|++... |++..|...+.. ....|+.++|.+
T Consensus 24 ~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 46899999999998753 3 677899999999999999999999998764 566777777753 335677766655
Q ss_pred --HHHHHHH-CCCCc-CHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------
Q 012539 76 --LFHLMQI-HDVKL-NEVSMVSVLSACTH---------LGALDQGRWAHVYIERNRLKMTVTLGTALVDMY-------- 134 (461)
Q Consensus 76 --~~~~m~~-~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------- 134 (461)
+|++... .|..| +...|...+..... .|+++.|..+|++.++....+...+|.......
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHH
Confidence 6666554 34444 44556655555433 567788888888777631111112222211100
Q ss_pred -----HhcCCHH------------------------------------------------------------HHHHHHHh
Q 012539 135 -----SKCGNMN------------------------------------------------------------KAMDFFWG 149 (461)
Q Consensus 135 -----~~~g~~~------------------------------------------------------------~A~~~~~~ 149 (461)
.+.++++ .|..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 0111222 33344444
Q ss_pred cCC---CCHHHHHHHHHHHHh-------CCChH-------HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHH
Q 012539 150 MKE---RNVYTWTSVIGGLAM-------NGAGE-------KSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 150 ~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
... .+...|..++..+.+ .|+++ +|.++|++..+. +.| +...+..++..+...|++++|..
T Consensus 264 al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 432 255667777777665 68877 899999998753 244 47788888888899999999999
Q ss_pred HHHHhhhhcCCccC-h-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHHHHHHHHhh
Q 012539 212 HFDSMRREYGIEPW-L-EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNA-CRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 212 ~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~ 286 (461)
+|+.+++ +.|+ . ..|..++..+.+.|++++|..+|++. ...|+ ...|...... +...|+.++|..+|+++.+
T Consensus 343 ~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 343 IYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9999875 3554 2 47888888899999999999999988 33333 2233322222 3468999999999999999
Q ss_pred ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 287 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 420 ~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 420 KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999998764
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3.4e-14 Score=128.37 Aligned_cols=250 Identities=10% Similarity=0.000 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN--EVSMVSVLSAC 99 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~ 99 (461)
.+......+.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++..+....|+ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666677777777777776532 2445666677777777777777777777666321111 22356666666
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666654 33455666666666666666666666666553 244555555522223346666666
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhhcCc---HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 177 LFSLMKQAGVRPN-EVTFVSVLRGCCVVGL---VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 177 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.|+++.+. .|+ ...+..+..++...|+ .++|...++.+.+...-.|+.. -.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~---------------------- 218 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD---------------------- 218 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH----------------------
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH----------------------
Confidence 66666553 222 3444444444444444 4444444444332211111110 00
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 253 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
....+|..+...+...|++++|...++++.+++|+++.+...+.....
T Consensus 219 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 219 ---ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 001356666677888888888888888988888888766665554443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=5e-14 Score=123.02 Aligned_cols=193 Identities=11% Similarity=0.018 Sum_probs=116.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
++..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455666666666666666666666665532 2245555666666666666666666666666654 344555556666
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 133 MYSKC-----------GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 133 ~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
+|.+. |++++|+..|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 777777777776552 345667777777777777777777777777665 56666777777
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
++...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777642 33 4566667777777777777777776654
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=5.3e-13 Score=139.72 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=225.0
Q ss_pred ccccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 4567899999999999752 2222333433 7789999999998773 4788999999999999999999999663
Q ss_pred HCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHH
Q 012539 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161 (461)
Q Consensus 82 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 161 (461)
-|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++..... ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 477888899999999999999999999888765 33334445999999999999644443 45677788889
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 99999999999999999984 478899999999999999999998662 45788888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc--CChhHHHHHHH
Q 012539 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES--KNWDRVINVRQ 316 (461)
Q Consensus 242 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 316 (461)
+..|......+ ..++..+..++..|...|.+++|+.+++...+++|.....|.-|..+|++. ++..++.+.|.
T Consensus 1266 f~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1266 FRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999877653 445666778888999999999999999999999988888888888887754 33444444443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=7.1e-14 Score=132.37 Aligned_cols=246 Identities=9% Similarity=-0.011 Sum_probs=202.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
+...|+.+...+...|++++|++.|++.++.. +-+..+|..+..++...|+ +++|...++++++.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35678899999999999999999999999853 2256788889999999996 999999999999986 55788899999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-cCcHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV-VGLVE 207 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~ 207 (461)
.+|.+.|++++|+..|+++.. .+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998873 578899999999999999999999999998853 2357888888888888 66656
Q ss_pred HH-----HHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 012539 208 EG-----REHFDSMRREYGIEP-WLEHYGCLVDLYGRAG--RLDEALDVINKMPMKPH-AGAWGALLNACRMYK------ 272 (461)
Q Consensus 208 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~------ 272 (461)
+| +..++..++ +.| +...|..+..+|...| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477877764 355 4678888888999888 68999998888744554 457788888887764
Q ss_pred ---ChHHHHHHHHHH-hhccCCCcchHHHHHHHHhh
Q 012539 273 ---NTEMGELASRKL-VELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 273 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 304 (461)
..++|..+++++ .+++|.....|..+...+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999988888887776653
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=2.1e-13 Score=123.14 Aligned_cols=214 Identities=9% Similarity=-0.065 Sum_probs=175.0
Q ss_pred ccccCCchHHHHHHhcCC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHH
Q 012539 2 YAELGCLGYCQKVFDGIH--E-PDVVCQTAMISACAKCGDVDLARKMFDEMPE--RD----PIAWNAMLAGYAQCGKSRE 72 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~ 72 (461)
|.+.|++++|+..|+++. . .+..++..+...|.+.|++++|+..|++..+ ++ ..+|..+...|...|++++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 467899999999999875 2 3556899999999999999999999998654 22 2358999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH-HHHHhcCCHHHHHHHHHhcC
Q 012539 73 ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV-DMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 73 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 151 (461)
|+..|++..+.. +.+..++..+...+...|++++|...+.++++.. +.+..++..+. ..|. .+++++|.+.|++..
T Consensus 93 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 93 AIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999998854 3366789999999999999999999999998874 55677777788 5554 569999999999877
Q ss_pred C---CCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 152 E---RNVYTWTSVIGGLAMNGA---GEKSLELFSLMKQAG-VRPN------EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 152 ~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+ .+...|..+...+...|+ +++|...|++..+.. -.|+ ..+|..+...+...|++++|...++.+.+
T Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 357788888999998888 888999999987642 1233 24667777888888999999999988875
No 42
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=6.7e-13 Score=132.28 Aligned_cols=313 Identities=8% Similarity=-0.005 Sum_probs=222.6
Q ss_pred cccCCchHHHHHHhcCCC--CCHHHHHHHHHH-HHHcCCHHHHHH----HHhhCC------CCChhHHHHHHHHHHH---
Q 012539 3 AELGCLGYCQKVFDGIHE--PDVVCQTAMISA-CAKCGDVDLARK----MFDEMP------ERDPIAWNAMLAGYAQ--- 66 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~--- 66 (461)
.+.|+++.|+.+|++++. |++..|...+.. ....|+++.|.+ +|++.. .++...|...+....+
T Consensus 57 ~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 57 IKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 457889999999988763 777778777753 334566665554 665432 1245677777766554
Q ss_pred ------cCChHHHHHHHHHHHHCCCCcCHHHHHHHHH-------------------------------------------
Q 012539 67 ------CGKSREALHLFHLMQIHDVKLNEVSMVSVLS------------------------------------------- 97 (461)
Q Consensus 67 ------~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~------------------------------------------- 97 (461)
.|++++|..+|++.++....+....|.....
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6778888888887776211111122221111
Q ss_pred ----------------------HHhc----cCCH----HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-------cCCH
Q 012539 98 ----------------------ACTH----LGAL----DQGRWAHVYIERNRLKMTVTLGTALVDMYSK-------CGNM 140 (461)
Q Consensus 98 ----------------------~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~ 140 (461)
.... .++. +.+..++++++... +.+..+|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 0000 0011 23445566665543 4566777777777775 7998
Q ss_pred H-------HHHHHHHhcCC---C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCcHH
Q 012539 141 N-------KAMDFFWGMKE---R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE--VTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 141 ~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~ 207 (461)
+ +|..+|++... | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|+.+
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999998763 3 678999999999999999999999999998 45652 47888888888999999
Q ss_pred HHHHHHHHhhhhcCCccC-hhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 208 EGREHFDSMRREYGIEPW-LEHYGCLVDL-YGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
+|..+|+...+. .|. ...|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+|++
T Consensus 374 ~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 999999998753 343 3334333322 34689999999999987 3334 567999999999999999999999999
Q ss_pred HhhccCCCcc----hHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 284 LVELETKNHG----AYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 284 ~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+....|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998776554 7777788888999999999999998764
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=9.3e-13 Score=119.19 Aligned_cols=226 Identities=13% Similarity=-0.027 Sum_probs=136.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLGT 128 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 128 (461)
++.++..+...|...|++++|+..|++..+. -+..++..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666666666666666666666652 234455555556665 666666666666666654 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012539 129 ALVDMYSK----CGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199 (461)
Q Consensus 129 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 199 (461)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 56666666 6666666666665543 355566666666666 667777777777766644 34455555555
Q ss_pred Hhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 012539 200 CCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR----AGRLDEALDVINKMPMKPHAGAWGALLNACRM- 270 (461)
Q Consensus 200 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~- 270 (461)
+.. .++.++|...|+...+. + ++..+..+..+|.. .+++++|...|++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 655 66777777777666542 1 34555566666666 66666666666655111224455555555665
Q ss_pred ---cCChHHHHHHHHHHhhccCCC
Q 012539 271 ---YKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 271 ---~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.+++++|...++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 666777777777776666653
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=8.4e-14 Score=125.84 Aligned_cols=238 Identities=10% Similarity=-0.136 Sum_probs=167.1
Q ss_pred HcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 35 KCGDVDLARKMFDEMPER-------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
..|++++|+..|+++.+. +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888887776542 35677788888888888888888888887753 2356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
|...+..+++.. +.+..++..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888888888764 44567777888888888888888888887763 43333344444556668889999999877665
Q ss_pred CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH
Q 012539 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG 259 (461)
Q Consensus 186 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 259 (461)
.+++...+ .++..+...++.++|...+....+ ..|+ ...+..+...|.+.|++++|...|+++ ...|+..
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 23444444 366667777888888888887753 2332 567888888999999999999999887 4455332
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 012539 260 AWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
.....++...|++++|...+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 22344566677777777665
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.3e-13 Score=119.63 Aligned_cols=204 Identities=10% Similarity=-0.027 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+..|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...+.++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4456666666666666666666666665532 2234455555555555555555555555555443 2233344444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
|...|++++|.+.|+++ ...+..|+ ...+..+...+...|++++|...
T Consensus 115 ~~~~g~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEA-------------------------------SQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHHHHHHHHHHH-------------------------------TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH-------------------------------HhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444444443 32111221 22333333444444444444444
Q ss_pred HHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
++.+.+. .+.+...+..+...|...|++++|...++++ ...| +...+..+...+...|+.++|...++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 4444321 0112334444444444455555555444443 1122 2334444445555555666666666666655555
Q ss_pred Cc
Q 012539 291 NH 292 (461)
Q Consensus 291 ~~ 292 (461)
++
T Consensus 242 ~~ 243 (252)
T 2ho1_A 242 SL 243 (252)
T ss_dssp SH
T ss_pred CH
Confidence 54
No 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=8.1e-13 Score=138.31 Aligned_cols=281 Identities=11% Similarity=0.077 Sum_probs=223.7
Q ss_pred ccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 4 ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
+.|++++|.++.++. .++.+|..+..++.+.|++++|+..|.+. .|...|..++.++.+.|++++|++.|...++.
T Consensus 1088 ~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 446677777777665 45789999999999999999999999774 78889999999999999999999999987775
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 163 (461)
. ++....+.++.+|++.+++++...+. + .++...+..+.+.|...|++++|..+|... ..|..+..
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~ 1229 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 1229 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHH
Confidence 4 34333445888999999988644442 2 345566667999999999999999999985 59999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 243 (461)
+|.+.|++++|++.+++. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.++
T Consensus 1230 tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999976 35688999999999999999998876533 345667889999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--CChHHHHHHHHHHhhccC-----CCcchHHHHHHHHhhcCChhHHHHH
Q 012539 244 EALDVINKM-PMKPH-AGAWGALLNACRMY--KNTEMGELASRKLVELET-----KNHGAYVLLSNIYAESKNWDRVINV 314 (461)
Q Consensus 244 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 314 (461)
+|+.+++.. +..|. ...|.-|...+.+. ++..++.+.|..-..+.| .+...|.-+...|.+.|+|+.|...
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999776 44443 33665565555554 455566666665555444 4667899999999999999999853
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=6.2e-14 Score=124.19 Aligned_cols=172 Identities=13% Similarity=0.030 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
++..+...|.+.|++++|...|++.. ..+..+|..+...|...|++++|++.|+++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33333444444444444444444332 1233444444555555555555555555554432 2234445555555555
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
.|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+..+|..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555555555432 1223445555555666666666666666554 112 2344666666667777777777777
Q ss_pred HHHHhhccCCCcchHHHHHH
Q 012539 281 SRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~ 300 (461)
++++.+..|++..++..+..
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHccCcchHHHHHHHHH
Confidence 77777777776655554443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=5e-13 Score=119.19 Aligned_cols=195 Identities=10% Similarity=-0.025 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 99 (461)
...|..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788999999999999999999998653 467899999999999999999999999998864 33678888999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
...|++++|...+..+.+.+..| +..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998833333 567788888999999999999999987753 46778888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
..|+++.+.. +.+...+..+...+...|+.++|..+++.+.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999887742 345667777777888889999999888888653
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=6.7e-13 Score=115.81 Aligned_cols=204 Identities=11% Similarity=-0.052 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------- 76 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA--------- 76 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH---------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh---------
Confidence 3445555555555555555555555554432 1233344444444444444444444444444432 2223
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN-GAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
.+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|..
T Consensus 77 ----------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 77 ----------------------EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ----------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333333444444 444444444444433111222 2333344444444444444444
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK--PHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
.++.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.+..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 44444321 1112334444444444444444444444443 111 223334444444455555555555555555555
Q ss_pred CCCc
Q 012539 289 TKNH 292 (461)
Q Consensus 289 p~~~ 292 (461)
|+++
T Consensus 213 p~~~ 216 (225)
T 2vq2_A 213 PYSE 216 (225)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 5554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=4.3e-13 Score=117.08 Aligned_cols=200 Identities=12% Similarity=-0.006 Sum_probs=171.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
+.+..++..+...|...|++++|.+.|+.+.+ .+...|..+...|...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34566778888889999999999999987663 467789999999999999999999999998753 34677888899
Q ss_pred HHHhhc-CcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012539 198 RGCCVV-GLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKN 273 (461)
Q Consensus 198 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 273 (461)
..+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999976 234443 678889999999999999999999887 3334 46788889999999999
Q ss_pred hHHHHHHHHHHhhccC-CCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 274 TEMGELASRKLVELET-KNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+++|...++++.+..| .+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 888899999999999999999999999987643
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=1.6e-13 Score=131.40 Aligned_cols=263 Identities=12% Similarity=0.021 Sum_probs=140.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLN----EVSMVSVLSACTHLGALDQGRWAHVYIERN----RLK-MTVTLG 127 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 127 (461)
+..+...+...|++++|+..|++..+.+. .+ ...+..+...+...|++++|...+.++... +.+ ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33344444444444444444444444211 11 123334444444444444444444443321 111 113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCC--------------------hHHHHHHH
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGA--------------------GEKSLELF 178 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 178 (461)
..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 4455555555555555555554432 11 2355555556666666 66666666
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 012539 179 SLMKQA----GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVI 249 (461)
Q Consensus 179 ~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 249 (461)
++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 554331 11111 234555666666677777777777666542111111 235666677777777777777776
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHHHHHHHHhhcCChhHHHHHH
Q 012539 250 NKM----PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 250 ~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+..+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 655 11111 3356666667777888888888887777654332 446777888888888888888888
Q ss_pred HHHHh
Q 012539 316 QIMKA 320 (461)
Q Consensus 316 ~~m~~ 320 (461)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=2.1e-12 Score=116.84 Aligned_cols=224 Identities=15% Similarity=-0.009 Sum_probs=195.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCHHHHHHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDFFWGMKE-RNVYTWTSVI 162 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 162 (461)
+..++..+...+...+++++|...+.+..+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667888888999999999999999999983 355677789999999 9999999999998764 4788999999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 163 GGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 163 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
..|.. .+++++|++.|++..+.+ +...+..+...|.. .++.++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999998865 67788888889998 99999999999998763 3 5667888888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh--
Q 012539 235 LYGR----AGRLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVLLSNIYAE-- 304 (461)
Q Consensus 235 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 304 (461)
.|.. .+++++|...|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987323466788888888999 9999999999999998876 5688999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 012539 305 --SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 305 --~g~~~~a~~~~~~m~~~g~ 323 (461)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988764
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=1.5e-13 Score=132.07 Aligned_cols=265 Identities=11% Similarity=-0.013 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCchHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERN----R-LKMTVTL 126 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 126 (461)
.+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...+.++++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4556667788888888888888888775321 22 36777777888888888888888877653 1 1223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCC-----------------hHHHHHHHHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKER---------NVYTWTSVIGGLAMNGA-----------------GEKSLELFSL 180 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 180 (461)
+..+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777888888888888888888776531 23577788888888888 8888888887
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 181 MKQA----GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 181 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11121 346777788888899999999998887653211112 23778888899999999999998877
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC------CcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 252 M----PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETK------NHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 252 ~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
. +...+ ..++..+...+...|++++|...++++.+..+. ...++..+..+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11111 347777888899999999999999998876433 234788899999999999999999998
Q ss_pred HHhC
Q 012539 318 MKAK 321 (461)
Q Consensus 318 m~~~ 321 (461)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8663
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.5e-13 Score=127.67 Aligned_cols=263 Identities=13% Similarity=0.026 Sum_probs=159.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLN----EVSMVSVLSACTHLGALDQGRWAHVYIERN----RLK-MTVTLGT 128 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 128 (461)
......+...|++++|+..|+++.+.... + ...+..+...+...|++++|...+.++.+. +.+ ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33444455555555555555555543211 1 234444555555555555555555544321 111 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCC--------------------hHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGA--------------------GEKSLELFS 179 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 179 (461)
.+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 566666666666666666655432 11 2356666666666666 677777666
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 180 LMKQA----GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 180 ~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
+.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65431 11111 335666667777778888888877776542111111 2367777788888888888888877
Q ss_pred hC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHHHHHHHHhhcCChhHHHHHHH
Q 012539 251 KM----PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 251 ~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+..+|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 65 11122 3466777777888999999999998887754332 3477889999999999999999999
Q ss_pred HHHhC
Q 012539 317 IMKAK 321 (461)
Q Consensus 317 ~m~~~ 321 (461)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
No 55
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=4.1e-12 Score=124.42 Aligned_cols=295 Identities=10% Similarity=-0.037 Sum_probs=217.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE------------RDPIAWNAMLAGYAQCGKSREALHLFHLMQIH-----D 84 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 84 (461)
....||.|...|...|++++|++.|++..+ ....+|+.+...|...|++++|+..+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 356799999999999999999999987431 24568999999999999999999999887652 1
Q ss_pred -CCc-CHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH---HhcCCHHHHHHHHHhcC---CCC
Q 012539 85 -VKL-NEVSMVSVLSACTHL--GALDQGRWAHVYIERNRLKMTVTLGTALVDMY---SKCGNMNKAMDFFWGMK---ERN 154 (461)
Q Consensus 85 -~~p-~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~---~~~ 154 (461)
..+ ...++.....++... +++++|...|+++++.. |.++..+..+..++ ...++.++|++.|++.. ..+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 112 345666666555544 57999999999999875 44566666665553 45677788888887654 346
Q ss_pred HHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHH
Q 012539 155 VYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHY 229 (461)
Q Consensus 155 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 229 (461)
..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+. .| +..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHH
Confidence 6777777666554 467889999999988753 445778888999999999999999999998753 44 45677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 230 GCLVDLYGRA-------------------GRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 230 ~~li~~~~~~-------------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
..+...|... +.+++|...+++. ...| +..++..+...+...|++++|...|+++.+..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7776666432 2356677777666 2334 44578888888999999999999999999988
Q ss_pred CCCcc---hHHHHHHH-HhhcCChhHHHHHHHHHHhC
Q 012539 289 TKNHG---AYVLLSNI-YAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 289 p~~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 321 (461)
|++.. .+..+... +...|++++|+..+++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77543 23344433 45789999999999988764
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.8e-13 Score=121.14 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788889999999999999998764 467899999999999999999999999998863 346788888999
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
.+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998764 2345778899999999999999999999887 2233 56788888899999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|...++++.+..|.+..++..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999997753
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.7e-13 Score=131.10 Aligned_cols=290 Identities=14% Similarity=0.035 Sum_probs=220.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-D----PIAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKL- 87 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p- 87 (461)
++....+..+...+.+.|++++|...|++..+ | + ..+|..+...|...|++++|+..|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34566777888899999999999999998653 2 3 357889999999999999999999987542 2222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----C-CchHHHHHHHHHHHhcCC--------------------HHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRL----K-MTVTLGTALVDMYSKCGN--------------------MNK 142 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~--------------------~~~ 142 (461)
...++..+...+...|++++|...+.++.+... + ....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677888889999999999999988775321 1 124477888999999999 999
Q ss_pred HHHHHHhcCC-----C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHH
Q 012539 143 AMDFFWGMKE-----R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 143 A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~ 208 (461)
|...|++... . ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9988887542 1 235788889999999999999999999865311 122 3367788889999999999
Q ss_pred HHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHH
Q 012539 209 GREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----AGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~ 276 (461)
|...++...+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987653211111 567888999999999999999998876 11122 4477788888999999999
Q ss_pred HHHHHHHHhhccCC------CcchHHHHHHHHhhcCChh
Q 012539 277 GELASRKLVELETK------NHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 277 a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~ 309 (461)
|...++++.++.+. ...++..+..+|...|+..
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999998876322 2446677777777776653
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=9.7e-14 Score=135.23 Aligned_cols=305 Identities=12% Similarity=0.055 Sum_probs=203.1
Q ss_pred cccCCchHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCH---HHHHHHHhhCCCCChhHHHHHHHHHHHcC-----ChHHH
Q 012539 3 AELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDV---DLARKMFDEMPERDPIAWNAMLAGYAQCG-----KSREA 73 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g-----~~~~A 73 (461)
.+.|++++|.+.|++..+ .++..+..|...|...|+. ++|...|++..+.++..+..|...+...| ++++|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 456889999999987643 3555666777778888888 89999999887778888888888666665 78899
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHHHHHHH
Q 012539 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD---QGRWAHVYIERNRLKMTVTLGTALVDMYSKCG----NMNKAMDF 146 (461)
Q Consensus 74 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 146 (461)
+..|++..+.|.. + .+..+...|...+..+ .+.+.+......| ++.....|..+|...+ +.+++..+
T Consensus 94 ~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999887643 2 5555666665544433 3444444444444 3445566788888777 45556667
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc----CcHHHHHHHHHHhhhh
Q 012539 147 FWGMKERNVYTWTSVIGGLAMNG---AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV----GLVEEGREHFDSMRRE 219 (461)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~ 219 (461)
++.....++.++..|...|...| +.++|++.|++..+.| .++...+..|...|... ++.++|..+|+...
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 77777767778888998998899 8899999999988876 44555555666666554 68899999998774
Q ss_pred cCCccChhHHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhccCCC
Q 012539 220 YGIEPWLEHYGCLVDL-Y--GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK-----NTEMGELASRKLVELETKN 291 (461)
Q Consensus 220 ~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~p~~ 291 (461)
+-++..+..|..+ | ...|++++|...|++.-...+...+..|...|. .| ++++|...|++.. |.+
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~ 317 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE 317 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC
Confidence 3356667777776 4 568899999999988732346667777777766 55 8999999999888 777
Q ss_pred cchHHHHHHHHhh----cCChhHHHHHHHHHHhCCC
Q 012539 292 HGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 292 ~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 323 (461)
+.++..|..+|.. ..++++|...+++..+.|.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8888888888877 3488999999998887665
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=5.6e-13 Score=126.23 Aligned_cols=226 Identities=11% Similarity=0.036 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCHHHHHHHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN-MNKAMDFFWGMKE---RNVYTWTSVIGG 164 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 164 (461)
...|..+..++...|++++|...+.++++.. +.+..+|+.+..++.+.|+ +++|+..|++... .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567788888899999999999999999986 5678889999999999997 9999999998873 478899999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHh-cCCH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGR-AGRL 242 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~ 242 (461)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++. .| +...|..+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999853 335788999999999999999999999999863 45 57889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC-------
Q 012539 243 DEA-----LDVINKM-PMKP-HAGAWGALLNACRMYK--NTEMGELASRKLVELETKNHGAYVLLSNIYAESK------- 306 (461)
Q Consensus 243 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 306 (461)
++| +..|++. ...| +...|+.+...+...| +.++|...++++ +.+|+++..+..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667666 4455 4568888888888887 689999999998 889999999999999999874
Q ss_pred --ChhHHHHHHHHH-Hh
Q 012539 307 --NWDRVINVRQIM-KA 320 (461)
Q Consensus 307 --~~~~a~~~~~~m-~~ 320 (461)
.+++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=2.8e-13 Score=130.20 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-CHHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE--R-DP----IAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKL-NEVSM 92 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~ 92 (461)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+. +-.| ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 345567788999999999999998653 2 33 47889999999999999999999988653 1122 34578
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhcCC-----------------HHHHHHHHHhc
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNR-----LKMTVTLGTALVDMYSKCGN-----------------MNKAMDFFWGM 150 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~ 150 (461)
..+...+...|++++|...+.++.+.. .+....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 888889999999999999999887641 12335577889999999999 99999988876
Q ss_pred CC-----C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 151 KE-----R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 151 ~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
.+ . ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 42 1 235788899999999999999999999866311 112 236778888999999999999999987
Q ss_pred hhhcCCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 217 RREYGIEP----WLEHYGCLVDLYGRAGRLDEALDVINKM-PM---KPH----AGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 217 ~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
.....-.. ...++..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 75321111 1567888999999999999999999877 11 112 337777888899999999999999999
Q ss_pred hhccCC
Q 012539 285 VELETK 290 (461)
Q Consensus 285 ~~~~p~ 290 (461)
.++.+.
T Consensus 370 l~~~~~ 375 (411)
T 4a1s_A 370 LQLAXX 375 (411)
T ss_dssp HHHCCH
T ss_pred HHHHhh
Confidence 887653
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=3.8e-13 Score=131.89 Aligned_cols=208 Identities=7% Similarity=-0.077 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM-NKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
++.+.+.+....... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666555443 45677788888888889999 999998887753 3578899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhc---------CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhc--------CCH
Q 012539 181 MKQAGVRPNEVTFVSVLRGCCVV---------GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRA--------GRL 242 (461)
Q Consensus 181 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~ 242 (461)
..+. .|+...+..+...+... |++++|...|++..+. .| +...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8874 57778888888888888 9999999999988753 44 477888899999888 899
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 243 DEALDVINKM-PMKP----HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
++|...|++. ...| +...|..+...+...|++++|...++++.+++|++..++..+..++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999887 3345 6678999999999999999999999999999999999999999999999999999876544
Q ss_pred H
Q 012539 318 M 318 (461)
Q Consensus 318 m 318 (461)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=1.6e-12 Score=120.61 Aligned_cols=267 Identities=13% Similarity=0.035 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-CHHH
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPE--R-D----PIAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKL-NEVS 91 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t 91 (461)
..+......+...|++++|...|++..+ | + ...|..+...|...|++++|++.+++.... +..| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455566778889999999999987642 2 3 357888889999999999999999887542 1122 2456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C----chHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLK-M----TVTLGTALVDMYSKCGN--------------------MNKAMDF 146 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~~A~~~ 146 (461)
+..+...+...|++++|...+.+..+.... + ...++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777888888999999999998887653211 1 13477788889999999 8999888
Q ss_pred HHhcCC-----C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 147 FWGMKE-----R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 147 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
+++... . ...++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 877542 1 235788888899999999999999998865310 111 33677788888999999999999
Q ss_pred HHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 012539 213 FDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----AGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 213 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
++...+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887653211111 557788889999999999999998876 11122 33677788889999999999999
Q ss_pred HHHHhhccCC
Q 012539 281 SRKLVELETK 290 (461)
Q Consensus 281 ~~~~~~~~p~ 290 (461)
++++.++.+.
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=2.2e-11 Score=112.33 Aligned_cols=218 Identities=8% Similarity=0.013 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 71 REALHLFHLMQIHDVKLNEVSMVSVLSACT-------HLGAL-------DQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
++|+.+|++..... +-+...|...+..+. ..|+. ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666666666532 224445555555543 23554 6777777777763224455567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-CHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-hcCcHHHHHH
Q 012539 137 CGNMNKAMDFFWGMKE--R-NVY-TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC-VVGLVEEGRE 211 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~ 211 (461)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776653 2 233 67777777777777788888887777642 223444443332222 2578888888
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-P---MKP--HAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
+|+..++.. +.++..|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887776531 224667777777777788888888877776 1 233 34477777777777888888888888888
Q ss_pred hccCCCc
Q 012539 286 ELETKNH 292 (461)
Q Consensus 286 ~~~p~~~ 292 (461)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777654
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=7.6e-12 Score=105.82 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 233 (461)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34455555666666666666666666655531 123455555555666666666666666655432 122344555555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
..+...++++.|...+.+. ...| +...+..+...+...|++++|+..++++.+.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666666666666666555 2223 3456666666777777777777777777777887777778888888888888888
Q ss_pred HHHHHHHHhC
Q 012539 312 INVRQIMKAK 321 (461)
Q Consensus 312 ~~~~~~m~~~ 321 (461)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8887777654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=1.9e-11 Score=112.71 Aligned_cols=227 Identities=10% Similarity=0.020 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHc----CCH----HHHHHHHhhCCC---CChhHHHHHHHHHHH-------cCCh-------HHHHHHH
Q 012539 23 VVCQTAMISACAKC----GDV----DLARKMFDEMPE---RDPIAWNAMLAGYAQ-------CGKS-------REALHLF 77 (461)
Q Consensus 23 ~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~---~~~~~~~~li~~~~~-------~g~~-------~~A~~~~ 77 (461)
...|...+..--+. ++. ++|..+|++... .++..|..++..+.. .|++ ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 34566666654443 233 677788887654 367788888877763 4776 8899999
Q ss_pred HHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 012539 78 HLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-LGTALVDMYSKCGNMNKAMDFFWGMKE--- 152 (461)
Q Consensus 78 ~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--- 152 (461)
++..+. +.| +...|..++..+...|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 988873 234 45578888888888899999999999988853 22343 788888888889999999999988764
Q ss_pred CCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhHH
Q 012539 153 RNVYTWTSVIGGLA-MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--WLEHY 229 (461)
Q Consensus 153 ~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 229 (461)
.+...|...+.... ..|++++|.++|++..+.. +-+...+..++..+...|+.++|..+|++......++| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 23445544433322 3689999999999887742 33567788888888889999999999998876423455 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
..++..+.+.|+.++|..+++++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888899999999888876
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=2.8e-12 Score=122.20 Aligned_cols=224 Identities=10% Similarity=-0.020 Sum_probs=113.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----HHHHHH
Q 012539 96 LSACTHLGALDQGRWAHVYIERN----RLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN-----VYTWTS 160 (461)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~ 160 (461)
...+...|++++|...+.++.+. +-++ ...++..+...|...|++++|...|++..+ ++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34445555666666655555542 1111 234455555566666666665555554431 11 234555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc---CCcc-ChhHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREY---GIEP-WLEHYGC 231 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~ 231 (461)
+...|...|++++|++.|++..+... .++ ..++..+...|...|++++|...+++..+-. +..| ...++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 55666666666666666655543210 011 1345555556666666666666665554310 1112 2445556
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-C---CCCCH---HHHHHHHHHHHhcCC---hHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 232 LVDLYGRAGRLDEALDVINKM-P---MKPHA---GAWGALLNACRMYKN---TEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~---~~p~~---~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
+...|.+.|++++|...+++. . ..++. ..+..+...+...|+ .++|..++++. ...|.....+..++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 666666666666666665554 0 00111 123334444555555 45555555444 1222233456667777
Q ss_pred HhhcCChhHHHHHHHHHHh
Q 012539 302 YAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~ 320 (461)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777766654
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=8.3e-12 Score=121.56 Aligned_cols=308 Identities=14% Similarity=0.003 Sum_probs=208.6
Q ss_pred ccccCCc---hHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHhhCCCC-ChhHHHHHHHHHHHcCChHH
Q 012539 2 YAELGCL---GYCQKVFDGIHEPDVVCQTAMISACAKCG-----DVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSRE 72 (461)
Q Consensus 2 y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~ 72 (461)
|...|+. ++|...|++..+.++..+..|...+...| ++++|...|++..++ ++..+..|...|...+...+
T Consensus 45 y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 45 QVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCT
T ss_pred HHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC
Confidence 4556777 89999999987777778888888666655 789999999987654 56688899999988776444
Q ss_pred ---HHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC---CHHHHHHH
Q 012539 73 ---ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG---NMNKAMDF 146 (461)
Q Consensus 73 ---A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~ 146 (461)
+.+.+.+....| +......+...+...+.++.+......+.+.....++..+..|..+|.+.| +.++|.+.
T Consensus 125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 455555555444 345566667777777744444333332322222333447778999999999 99999999
Q ss_pred HHhcCC---CCHHHHHHHHHHHHhC----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hhcCcHHHHHHHHHHh
Q 012539 147 FWGMKE---RNVYTWTSVIGGLAMN----GAGEKSLELFSLMKQAGVRPNEVTFVSVLRG-C--CVVGLVEEGREHFDSM 216 (461)
Q Consensus 147 ~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~ 216 (461)
|+...+ ++...+..|...|... +++++|++.|++.. .| +...+..|... + ...++.++|..+|++.
T Consensus 202 ~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 202 MEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 997763 4555557788887654 68999999999987 33 44556666665 3 4689999999999998
Q ss_pred hhhcCCccChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhc
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAG-----RLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVEL 287 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 287 (461)
.+. | ++..+..|..+|. .| ++++|...|++.. ..++..+..|...|.. ..+.++|...|++..+.
T Consensus 278 a~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 278 RAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 753 4 5677778888887 55 9999999999998 6677777777777665 34899999999998875
Q ss_pred cCCCcchHHHHHHHHhh----cCChhHHHHHHHHHHhCCCc
Q 012539 288 ETKNHGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 288 ~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 324 (461)
+ ++.+...|..+|.. ..+.++|...++...+.|..
T Consensus 352 g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 352 G--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp T--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred C--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 4 45688889999875 46899999999999887753
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=5e-13 Score=122.88 Aligned_cols=128 Identities=9% Similarity=-0.033 Sum_probs=66.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc------C-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------
Q 012539 91 SMVSVLSACTHLGALDQGRWAHVYIERN------R-LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----------- 152 (461)
Q Consensus 91 t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------- 152 (461)
++..+...+...|++++|...+.++++. + .+....++..+...|...|++++|...|++..+
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444332 1 112233445555555555555555555554431
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA------GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
....+|..+...|...|++++|++.|+++.+. +..|+ ..++..+...+...|++++|...++.+.+
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02234556666666666666666666666543 11222 33455666666677777777777766654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=4.9e-12 Score=120.50 Aligned_cols=287 Identities=7% Similarity=-0.043 Sum_probs=208.8
Q ss_pred cccCCchHHHHHHhcCC--------CCCHHHHHHHHHHHH--HcCCHHHHH-----------HHHhhCCCC--ChhH---
Q 012539 3 AELGCLGYCQKVFDGIH--------EPDVVCQTAMISACA--KCGDVDLAR-----------KMFDEMPER--DPIA--- 56 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~--~~~~--- 56 (461)
.+.+++++|..+++.+. .++...|-.++..-. -.++++.+. +.++.+... +...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 46789999999886642 234444455544311 223333333 555544321 1111
Q ss_pred ---HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------CC
Q 012539 57 ---WNAMLAGYAQCGKSREALHLFHLMQIH----DVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRL------KM 122 (461)
Q Consensus 57 ---~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~ 122 (461)
|......+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+... +.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 223566788999999999999998763 1122 335788888999999999999999999886421 11
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRP- 188 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 188 (461)
...+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.|++..+. +..|
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 245778899999999999999999988763 22 247888999999999999999999998762 3323
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HH
Q 012539 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEHYGCLVDLYGRAGR---LDEALDVINKMPMKPHAG-AW 261 (461)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~ 261 (461)
...++..+...+...|++++|...++...+...-.++ ...+..+...|...|+ +++|+.++++.+..|+.. .+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3667888999999999999999999988753211112 3346678888999999 999999999986555444 66
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 262 GALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 262 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
..+...|...|++++|...++++.++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999987543
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=5e-13 Score=122.91 Aligned_cols=229 Identities=9% Similarity=0.018 Sum_probs=153.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERN-------RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-------R---- 153 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---- 153 (461)
+..+...+...|++++|...+.++.+. ..+....++..+...|...|++++|...|++... +
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 333334444444444444444444331 2233456778899999999999999999987652 1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc-----C
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA------GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREY-----G 221 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~ 221 (461)
...+|..+...|...|++++|++.|++..+. +..|+ ...+..+...+...|++++|..+++.+.+.. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888999999999999999999998764 22233 4567788889999999999999999887531 1
Q ss_pred Ccc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 222 IEP-WLEHYGCLVDLYGRAGRLDEALDVINKMP----------MKPHA-------GAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 222 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
..| ....+..+...|...|++++|...++++- ..+.. ..+..+...+...+.+.++...++.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 122 35678889999999999999999998761 11111 1222233334555666677777777
Q ss_pred HhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 284 LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 284 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788888999999999999999999999998765
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=1.6e-11 Score=103.75 Aligned_cols=160 Identities=12% Similarity=0.060 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
++.+|..|...|.+.|++++|+..|++..+ .++.+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344555555555555555555555554332 234455555555555555555555555554432 1233344444444
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+...++++.+...+....+.. +.+..++..+...|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 455555555555555554443 33344444455555555555555555544431 23444555555555555555555
Q ss_pred HHHHHHHH
Q 012539 176 ELFSLMKQ 183 (461)
Q Consensus 176 ~~~~~m~~ 183 (461)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=5.1e-10 Score=105.93 Aligned_cols=261 Identities=11% Similarity=-0.004 Sum_probs=149.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCcCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--chHHHHHH
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIHDVKLNEV----SMVSVLSACTHLGALDQGRWAHVYIERNRL---KM--TVTLGTAL 130 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 130 (461)
+...+...|++++|...+++........+.. ++..+...+...|++++|...+.+...... .+ ...+...+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344455566666666666555432111221 333444455556666666666655543210 11 11223455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC----------C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKE----------R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR--P--NEVTFVS 195 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~ 195 (461)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6666667777777666665432 1 1234555666677777777777777776553211 1 1345556
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHH
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG-----CLVDLYGRAGRLDEALDVINKMP-MKPH-----AGAWGAL 264 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 264 (461)
+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66677777888888777777654211111111111 23344667788888888887762 1221 1245566
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCC-----C-cchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 265 LNACRMYKNTEMGELASRKLVELETK-----N-HGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
...+...|++++|...++++.+..+. + ..++..+..++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66678888888888888887654322 1 13566778888888999998888887754
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=3e-11 Score=114.84 Aligned_cols=299 Identities=9% Similarity=-0.015 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHH--HHcCCHHHHHHHHhhCCC--------CChhHHHHHHHH--HHHcCChHHHH---------HHHHH
Q 012539 21 PDVVCQTAMISAC--AKCGDVDLARKMFDEMPE--------RDPIAWNAMLAG--YAQCGKSREAL---------HLFHL 79 (461)
Q Consensus 21 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~~ 79 (461)
|+..+-+.|-..| .+.+++++|..+++++.+ +++..|..|+.. ..-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 5666777777777 789999999998886432 234444444432 11112222222 55555
Q ss_pred HHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--C---CchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 80 MQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERNRL--K---MTVTLGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 80 m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
+.....+.+. ..+......+...|++++|...+.++.+... + ....++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 1223344556788999999999999886421 1 13457778899999999999998888776
Q ss_pred CC-----CC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 151 KE-----RN-----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRP-NEVTFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 151 ~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
.+ ++ ..+++.+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 42 12 357888899999999999999999988652 1111 134677788889999999999999998
Q ss_pred hhhhc---CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---hHHHHHHHH
Q 012539 216 MRREY---GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PM--KPHA-GAWGALLNACRMYKN---TEMGELASR 282 (461)
Q Consensus 216 ~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~ll~~~~~~~~---~~~a~~~~~ 282 (461)
..+-. +.+....++..+...|.+.|++++|...+++. +. .|.. ..+..+...+...++ ..+|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 87511 22223667888899999999999999999876 21 2222 244445455667777 667776666
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+. ...|.....+..++..|...|++++|...+++..+
T Consensus 328 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 62 22233445777899999999999999999988754
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=1.5e-11 Score=120.59 Aligned_cols=207 Identities=10% Similarity=-0.018 Sum_probs=174.4
Q ss_pred CHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012539 38 DVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKS-REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113 (461)
Q Consensus 38 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (461)
.+++|+..++... ..+...|..+...|...|++ ++|++.|++..+.. +-+..+|..+..++...|++++|...++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667777776543 23678899999999999999 99999999998854 2357789999999999999999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC--------CChHH
Q 012539 114 YIERNRLKMTVTLGTALVDMYSKC---------GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN--------GAGEK 173 (461)
Q Consensus 114 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~ 173 (461)
++++.. |+...+..+...|... |++++|++.|++..+ .+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998865 5568888899999999 999999999998763 4678899999999988 99999
Q ss_pred HHHHHHHHHHcCCCC----CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 174 SLELFSLMKQAGVRP----NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 174 A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
|++.|++..+. .| +...+..+..++...|++++|...|+...+. .| +...+..+..++...|++++|.+.
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 44 6888889999999999999999999998753 44 467788899999999999999988
Q ss_pred HHhC
Q 012539 249 INKM 252 (461)
Q Consensus 249 ~~~~ 252 (461)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 8776
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=1.6e-11 Score=125.40 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLV 233 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 233 (461)
.+|+.|...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|...|++.++ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 34444444555555555555555554442 232 44444455555555555555555554442 1332 44555555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
.+|.+.|++++|++.|++. ...| +...|+.+...+...|++++|+..|+++++++|++..+|..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 5555555555555555544 2233 2345666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 012539 312 INVRQIMK 319 (461)
Q Consensus 312 ~~~~~~m~ 319 (461)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=1.9e-10 Score=109.21 Aligned_cols=285 Identities=9% Similarity=0.038 Sum_probs=202.5
Q ss_pred cccCCchHHHHHHhcCC--------CCCHHHHHHHHHHHH--HcCCHHHHH---------HHHhhC---CCC-C-hh---
Q 012539 3 AELGCLGYCQKVFDGIH--------EPDVVCQTAMISACA--KCGDVDLAR---------KMFDEM---PER-D-PI--- 55 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~--~~g~~~~A~---------~~~~~m---~~~-~-~~--- 55 (461)
.+.+++++|.++++.+. .+++..|-.|+..-. -.+.++.+. ..++.+ ..+ + ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 46788999999886532 234444555554311 111111111 344433 222 1 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----C-Cch
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLN----EVSMVSVLSACTHLGALDQGRWAHVYIERNRL-----K-MTV 124 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~ 124 (461)
.|......+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.+..+... + ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 334456677899999999999999876421 122 35778888999999999999999998875321 1 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHH
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRPNEV 191 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~ 191 (461)
.+++.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.|++..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 5778899999999999999999987653 22 357888999999999999999999998761 2222367
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEHYGCLVDLYGRAGR---LDEALDVINKMPMKPHAG-AWGAL 264 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l 264 (461)
++..+...+...|+.++|...++...+...-.++ ...+..+...|...|+ +++|+..+++.+..|+.. .+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7888899999999999999999998764322222 3456667777888888 999999999876444444 56677
Q ss_pred HHHHHhcCChHHHHHHHHHHhhc
Q 012539 265 LNACRMYKNTEMGELASRKLVEL 287 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~ 287 (461)
...|...|++++|...++++.+.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 77799999999999999998764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=7.5e-11 Score=99.14 Aligned_cols=162 Identities=9% Similarity=-0.088 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556677777777788888777777663 355667777777777777777777777776642 23455555666666
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
...|++++|...++.+.+. .+.+.. .+..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~--------------------------------~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFN--------------------------------VRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHH--------------------------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHH--------------------------------HHHHHHHHHHHcCcHHHHHHH
Confidence 6666666666666665432 112233 444444445555555555555
Q ss_pred HHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 281 SRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++++.+..|.++.++..++.+|...|++++|.+.+++..+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555556666666666666665555544
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=4e-10 Score=94.60 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
..|..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666667777777777777777776542 45567777777777777777777777766542 224455555556666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHH
Q 012539 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 177 (461)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666655543 33444444455555555555555555544331 2334444444444444444444444
Q ss_pred HHHHH
Q 012539 178 FSLMK 182 (461)
Q Consensus 178 ~~~m~ 182 (461)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=2.1e-10 Score=100.54 Aligned_cols=203 Identities=7% Similarity=-0.026 Sum_probs=156.3
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHH
Q 012539 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIG 163 (461)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 163 (461)
.|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|++.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466888888999999999999999999999987546777777799999999999999999998763 35678999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhHHHHH
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPN-E-------VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEHYGCL 232 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 232 (461)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|...|+.+++ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999885 343 4 4577777888889999999999998874 4554 5677778
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 233 VDLYGRAGRL--DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 233 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
...|...|+. ++|..+ . ..+...+.... ....+.+++|...++++.++.|+++.+...+..+
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 222221 1 22344444333 3445668999999999999999998766666544
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=6e-10 Score=105.43 Aligned_cols=264 Identities=8% Similarity=-0.040 Sum_probs=188.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC----CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcCH----HHH
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMP----ERDP----IAWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLNE----VSM 92 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~t~ 92 (461)
...+...+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445566778999999999987642 2232 2567788889999999999999998765211 1122 335
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------CHHH
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERN----RLK--M-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R------NVYT 157 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~ 157 (461)
..+...+...|++++|...+++..+. +.+ | ....+..+...|...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999988753 222 2 345667788899999999999999987642 1 2357
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFV-----SVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEH 228 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 228 (461)
|..+...+...|++++|...+++.......++ ...+. ..+..+...|+.++|...+...... ...+. ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 88888899999999999999999875422221 11121 2334477899999999999988642 11111 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-------PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+..+...+...|++++|...+++. +..++.. .+..+..++...|+.++|...+++..+..++
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 567788899999999999998876 1111222 5555666688999999999999999876543
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=2.7e-10 Score=116.45 Aligned_cols=158 Identities=10% Similarity=0.031 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSA 98 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~ 98 (461)
..+|+.|...|.+.|++++|+..|++..+ .+..+|+.|..+|.+.|++++|++.|++.++. .| +..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555555555555555555555555432 23445555555555555555555555555553 22 34455555555
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+...|++++|.+.++++++.. +.+...++.+..+|.+.|++++|++.|++..+ .+...|..+..+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 555555555555555555543 33444555555555555555555555554432 23445555555555555555555
Q ss_pred HHHHHHHH
Q 012539 176 ELFSLMKQ 183 (461)
Q Consensus 176 ~~~~~m~~ 183 (461)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.6e-10 Score=104.26 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=87.0
Q ss_pred HcCChHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchHHHHHHH
Q 012539 66 QCGKSREALHLFHLMQI-------HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN------RL-KMTVTLGTALV 131 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 131 (461)
..|++++|+..|++..+ ...+....++..+...+...|++++|...+.++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666655543 111223456666777777777777777777776653 11 22345566667
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE-------R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA------GVRPN-EVTF 193 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~ 193 (461)
..|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+. +-.|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777777777777766665432 1 1345556666666666666666666666543 11221 3345
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 194 VSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
..+...+...|++++|..+++.+.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555556666666666666655543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=3.4e-10 Score=99.17 Aligned_cols=188 Identities=10% Similarity=-0.020 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSV 196 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 196 (461)
.++..+..+...|.+.|++++|...|+...+ ++...|..+..++...|++++|++.|++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4567777888999999999999999987652 67777877889999999999999999998874 454 5677888
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcCCccC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHH
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYGIEPW-L-------EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH---AGAWGAL 264 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 264 (461)
...+...|++++|...++...+. .|+ . ..|..+...+...|++++|...|++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 88899999999999999988753 343 4 45777888888899999999999887 55666 3466666
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666643 345556777777766655554443 34556789999999988764
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=5.5e-10 Score=101.99 Aligned_cols=135 Identities=10% Similarity=-0.019 Sum_probs=70.8
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHhccCCHHHHHHHH
Q 012539 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKLN-EVSMVSVLSACTHLGALDQGRWAH 112 (461)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 112 (461)
++++|...|++. ...|...|++++|++.|++.... |-.++ ..+|+.+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366776666553 66777778888888877766542 21111 345666666666667777776666
Q ss_pred HHHHHcCC---CC--chHHHHHHHHHHHhc-CCHHHHHHHHHhcCC--C---C----HHHHHHHHHHHHhCCChHHHHHH
Q 012539 113 VYIERNRL---KM--TVTLGTALVDMYSKC-GNMNKAMDFFWGMKE--R---N----VYTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 113 ~~~~~~~~---~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~~ 177 (461)
.+.++... .+ ...+++.+..+|... |++++|+..|++..+ | + ..+|..+...|.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66554210 00 022344445555553 555555555544331 0 0 12344444444444444455444
Q ss_pred HHHHHH
Q 012539 178 FSLMKQ 183 (461)
Q Consensus 178 ~~~m~~ 183 (461)
|++..+
T Consensus 181 ~~~al~ 186 (292)
T 1qqe_A 181 YSKLIK 186 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=1.2e-09 Score=98.43 Aligned_cols=130 Identities=11% Similarity=0.021 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------C-
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIH------DVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERN------R- 119 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 119 (461)
..+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|...+.++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 557888888888899999999888887753 2122 3457778888888888999998888887764 1
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-----------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.+....++..+...|...|++++|...|++.... ...++..+...|...|++++|++.|++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234567778888888889998888888776531 245677888888888999999888888765
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=1.1e-08 Score=93.36 Aligned_cols=209 Identities=10% Similarity=-0.041 Sum_probs=151.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHhcCCHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN----RLKMT-VTLGTALVDMYSKCGNMNKA 143 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A 143 (461)
++++|...|++. ...+...|++++|...+.+.... +-++. ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488898888876 33567789999999999887753 32222 56788899999999999999
Q ss_pred HHHHHhcCC-----CC----HHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhhcCcHHH
Q 012539 144 MDFFWGMKE-----RN----VYTWTSVIGGLAMN-GAGEKSLELFSLMKQAGVRP-N----EVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 144 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~ 208 (461)
+..|++..+ .+ ..+|+.+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999887653 12 35788899999996 99999999999987631110 1 3567888889999999999
Q ss_pred HHHHHHHhhhhcCCccCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCh
Q 012539 209 GREHFDSMRREYGIEPWL-----EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG------AWGALLNACR--MYKNT 274 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~ll~~~~--~~~~~ 274 (461)
|...|+...+...-.+.. ..+..+..++...|++++|...+++. ...|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999887531111121 15677888899999999999999887 4444422 3444555554 45678
Q ss_pred HHHHHHHHHHhhccCCCc
Q 012539 275 EMGELASRKLVELETKNH 292 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~ 292 (461)
++|...|+++..++|...
T Consensus 257 ~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHhccCCccHHHHH
Confidence 888888888887777654
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.2e-08 Score=91.96 Aligned_cols=138 Identities=8% Similarity=0.030 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
+...+++....+ +++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 23333334455555555666666555555422 133445555555555555555555555555
Q ss_pred HcCCCC-----CHHHHHHHHHHHh--hcC--cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 183 QAGVRP-----NEVTFVSVLRGCC--VVG--LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 183 ~~g~~p-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
+ ..| +..+...|+.++. ..| +..+|..+|+++... .|+...-..+..++.+.|++++|.+.++.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 234 2333333443321 122 555555555555332 22211222222245555555555555443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=1.1e-08 Score=91.42 Aligned_cols=207 Identities=10% Similarity=0.000 Sum_probs=147.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC-HHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN-EVT 192 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~ 192 (461)
+.+...+-.+...+.+.|++++|...|+.+.. | + ..++..+..+|.+.|++++|+..|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556666788888899999999999998874 3 3 56788888899999999999999999887532 122 445
Q ss_pred HHHHHHHHhh--------cCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 012539 193 FVSVLRGCCV--------VGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263 (461)
Q Consensus 193 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 263 (461)
+..+..++.. .|++++|...|+.+++. .|+ ......+.......+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 6667777777 88999999999888764 333 22222221111111111 112456
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCc---chHHHHHHHHhhc----------CChhHHHHHHHHHHhCCCccCCccc
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNH---GAYVLLSNIYAES----------KNWDRVINVRQIMKAKGVKKLPGCS 330 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s 330 (461)
+...+...|++++|...++++.+..|+++ .++..++.+|... |++++|...+++..+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-------- 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-------- 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--------
Confidence 66778999999999999999999998854 4788888999876 89999999999987642
Q ss_pred EEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 012539 331 VIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368 (461)
Q Consensus 331 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 368 (461)
+.+|...++...+.++...+.+.
T Consensus 226 ---------------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 ---------------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp ---------------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHHHHHHHHHHh
Confidence 23455566777777777766543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=8.2e-09 Score=92.35 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=136.4
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----CHHH
Q 012539 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTLGTALVDMYSKCGNMNKAMDFFWGMKE--R----NVYT 157 (461)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 157 (461)
.+...+......+...|++++|...+..+++.. |.+ ...+..+..+|.+.|++++|...|+.... | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356777888888999999999999999999875 333 66778899999999999999999998864 3 2457
Q ss_pred HHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhH
Q 012539 158 WTSVIGGLAM--------NGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228 (461)
Q Consensus 158 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 228 (461)
+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 8888889998 99999999999999885 3432 222111 111111110 0122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHhhccCCCcc
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMY----------KNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456777888899999999888877 22233 33666666777655 8889999999999999998853
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1e-08 Score=80.71 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
+|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46666677777777777777777766543 2345556666666666667777777766666554 334455555666666
Q ss_pred hcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 136 KCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
..|++++|.+.|+++.. .+...|..+...+.+.|++++|...|+++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665542 2455566666666666666666666666554
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=1.2e-08 Score=92.10 Aligned_cols=175 Identities=10% Similarity=-0.047 Sum_probs=113.6
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 143 AMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 143 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
|+..|++.. .++..++..+..++...|++++|++++.+....+..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 2455555677777777888888888888775544322 345566667777788888888888887754
Q ss_pred hcCCcc-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 012539 219 EYGIEP-----WLEHYGCLVDL--YGRAG--RLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL- 287 (461)
Q Consensus 219 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 287 (461)
. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23444455544 22233 788888888877 32354333334444677778888888888776655
Q ss_pred ---------cCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 288 ---------ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 288 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+|+++.++..++......|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 46777777777777766776 7777777777643
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=3.1e-08 Score=86.50 Aligned_cols=183 Identities=11% Similarity=-0.054 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE--VTFVS 195 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 195 (461)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455577888889999999999998763 32 357888888999999999999999998875322111 23444
Q ss_pred HHHHHhh------------------cCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 196 VLRGCCV------------------VGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 196 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
+..++.. .|+.++|...|+.+++. .|+ ...+...... +.+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH----------
Confidence 4444443 45667777777666543 232 2222211110 0000000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc---chHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH---GAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
......+...+...|++++|...++++.+..|+++ .++..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345568899999999999999999999875 56889999999999999999999999887654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=9.4e-09 Score=80.96 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHH
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 236 (461)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45555556666666666666666665432 223444455555555555555555555554432 11
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
.+...|..+...+...|++++|...++++.+..|.+..++..++.+|...|++++|.+.++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2233445555555566666666666666666666666666666666666667766666666
Q ss_pred HHHh
Q 012539 317 IMKA 320 (461)
Q Consensus 317 ~m~~ 320 (461)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=1.8e-09 Score=110.64 Aligned_cols=168 Identities=11% Similarity=-0.040 Sum_probs=136.4
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 135 SKCGNMNKAMDFFWGMK-----------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
...|++++|++.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 3466788888899999999999999999988752 23567788888888899
Q ss_pred CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 012539 204 GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
|++++|...|+++.+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988753 45 46788889999999999999 8888877 3345 456888888889999999999999
Q ss_pred HHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 281 SRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
++++.+++|.+..++..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988889999998877665
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=2.5e-08 Score=85.89 Aligned_cols=130 Identities=14% Similarity=0.046 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcC
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVG 204 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 204 (461)
.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 355566666666666666665442 24556666666666666666666666666553 23 3445555555554433
Q ss_pred c--HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 012539 205 L--VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGA 263 (461)
Q Consensus 205 ~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 263 (461)
. .+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2 223333333322 11121222233344455556666666666655 44555544433
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=3.3e-08 Score=89.83 Aligned_cols=175 Identities=9% Similarity=-0.068 Sum_probs=134.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
.+.....++.....+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+.++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344455555555556667777888888899999999999998875 44 466777888888899999999999988864
Q ss_pred hcCCccChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC--cc
Q 012539 219 EYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN--HG 293 (461)
Q Consensus 219 ~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 293 (461)
. .|+...... ....+...++.++|...+++. ...| +...+..+...+...|++++|...++++.+.+|.+ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 555433322 223366777788888887776 3345 55688888888999999999999999999999987 77
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 294 AYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
++..|+.+|...|+.++|...+++-.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988887653
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=3.1e-08 Score=85.31 Aligned_cols=154 Identities=10% Similarity=-0.025 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCcC
Q 012539 28 AMISACAKCGDVDLARKMFDEMPER---DPIAWNA----------------MLAGYAQCGKSREALHLFHLMQIHDVKLN 88 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 88 (461)
.....+.+.|++++|+..|++..+. ++..|.. +...|.+.|++++|+..|++..+.. +-+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 3344555666666666666665432 2334444 5555566666666666666555532 124
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC--HHHHHHHHHhcCCCCHH--HHHHHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN--MNKAMDFFWGMKERNVY--TWTSVIGG 164 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~li~~ 164 (461)
...+..+..++...|++++|...++++++.. |.+..++..+...|...|+ .+.+...|+....++.. .|..+..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4455555555555566666666665555543 3344455555555544332 23344444444444332 22223334
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~ 183 (461)
+...|++++|+..|++..+
T Consensus 167 ~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4444555555555555544
No 98
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.94 E-value=7.4e-07 Score=90.11 Aligned_cols=199 Identities=7% Similarity=-0.076 Sum_probs=117.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---------CCCC
Q 012539 123 TVTLGTALVDMYSKCGNMNKAM-DFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG---------VRPN 189 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~ 189 (461)
+..+|...+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++|+++.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3444444555555566666664 66665542 345556666666777777777777777766531 0131
Q ss_pred ------------HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CC
Q 012539 190 ------------EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG-RLDEALDVINKM--PM 254 (461)
Q Consensus 190 ------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~ 254 (461)
...|...+....+.|..+.|+.+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.. ..
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 2245555666666677777777777765420 1112334443333333443 367777777665 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC---CcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETK---NHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..+...|...+......|+.+.|..+|+++....|+ ....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 124446666666666677777777777777776653 33456666666667777777777777776643
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=3.2e-08 Score=101.24 Aligned_cols=187 Identities=13% Similarity=0.029 Sum_probs=148.2
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC
Q 012539 100 THLGALDQGRWAHVYIE--------RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN 168 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 168 (461)
...|++++|.+.+++++ +.. +.+...+..+...|.+.|++++|+..|++..+ .+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999998 443 55677888899999999999999999998873 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHH
Q 012539 169 GAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 169 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 246 (461)
|++++|++.|++..+. .| +...+..+..++...|++++ ...|+++++. .| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999885 44 46788889999999999999 9999998753 44 5778999999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHhcCC-----hHHHHHHHHHHhhccCCCcc
Q 012539 247 DVINKM-PMKPHA-GAWGALLNACRMYKN-----TEMGELASRKLVELETKNHG 293 (461)
Q Consensus 247 ~~~~~~-~~~p~~-~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 293 (461)
..|++. ...|+. ..|..+..++...++ .+...++.+.+....+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999998 566764 477777777655554 34444444555555444443
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=8.8e-10 Score=89.74 Aligned_cols=136 Identities=8% Similarity=-0.030 Sum_probs=79.1
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 244 (461)
..|++++|+..+++... ..|+ ...+..+...|...|++++|...|++.++. .| ++..|..+..+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHH
Confidence 33444555555544432 1222 223334445555555555555555555432 23 34555556666666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 245 ALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELA-SRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 245 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
|...|++. ...| +..+|..+...+...|+.++|.+. ++++.+++|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666555 3344 345677777777777777665544 588888888888888888777777664
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=3.4e-08 Score=82.56 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-Hh
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CT 100 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~ 100 (461)
.+..+...+.+.|++++|...|++..+ .++..|..+...+.+.|++++|+..|++.... .|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 355667788899999999999998875 36778899999999999999999999988764 3444333222111 11
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---CHHHHHHHHHHHHhCCChHHHH
Q 012539 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R---NVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~ 175 (461)
..+....+...++..++.. |.+...+..+...+...|++++|...|+++.+ | +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122234566777777654 44566777777788888888888888777653 2 2446777777777778877777
Q ss_pred HHHHHHH
Q 012539 176 ELFSLMK 182 (461)
Q Consensus 176 ~~~~~m~ 182 (461)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=1.1e-07 Score=86.38 Aligned_cols=160 Identities=9% Similarity=-0.077 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHH-HHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTS-VIGGL 165 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~ 165 (461)
...+..+...+...|++++|...++++.+.. |.+...+..+...|.+.|++++|...|++... |+...... ....+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3445555566666666777776666666654 34455566666666667777777776666653 33322222 22234
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHH
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 55556666666666665542 22355555666666666666666666666654311111244555566666666666555
Q ss_pred HHHHH
Q 012539 246 LDVIN 250 (461)
Q Consensus 246 ~~~~~ 250 (461)
...++
T Consensus 275 ~~~~r 279 (287)
T 3qou_A 275 ASXYR 279 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1.3e-07 Score=81.75 Aligned_cols=161 Identities=9% Similarity=-0.023 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----cHHHHHHHHHHhhhhcCCccChhHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG----LVEEGREHFDSMRREYGIEPWLEHY 229 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 229 (461)
++.++..|...|...+++++|++.|++..+.| +...+..|...|.. + +.++|..+|+...+. + ++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 44555555555555566666666666655543 33444445555554 4 566666666665432 2 34455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 230 GCLVDLYGR----AGRLDEALDVINKMP-MKPH---AGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 230 ~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
..|..+|.. .+++++|..+|++.- ..|. +..+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 556666655 566777777776662 2232 5566666666666 67788888888888777 555567778
Q ss_pred HHHHHhhc-C-----ChhHHHHHHHHHHhCCC
Q 012539 298 LSNIYAES-K-----NWDRVINVRQIMKAKGV 323 (461)
Q Consensus 298 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 323 (461)
|..+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88887654 2 78888888888777664
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=8.3e-08 Score=88.10 Aligned_cols=219 Identities=11% Similarity=-0.003 Sum_probs=151.0
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 012539 67 CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 146 (461)
.|++++|.+++++..+.. +.. + +...++++.|...+.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577888999888876531 111 0 11146677776666543 4567778888888888
Q ss_pred HHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 147 FWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAG---VRPN--EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 147 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876652 12 3578888889999999999999998875531 1122 3567778888888 999999999
Q ss_pred HHHhhhhcCCc---c-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 012539 213 FDSMRREYGIE---P-WLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----AGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 213 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
|++.++-..-. + ...++..+...|.+.|++++|...|++. +..++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98877532111 1 1457788899999999999999999877 11122 12566666677888999999999
Q ss_pred HHHHhhccCCCcch-----HHHHHHHHhhcCChhHHHH
Q 012539 281 SRKLVELETKNHGA-----YVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 281 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 313 (461)
+++.. ..|....+ ...++.++ ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865432 34455555 5677665555
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=2.7e-06 Score=77.27 Aligned_cols=229 Identities=10% Similarity=-0.026 Sum_probs=162.7
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchHHHHHHHHHH----Hhc
Q 012539 66 QCGK-SREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVTLGTALVDMY----SKC 137 (461)
Q Consensus 66 ~~g~-~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 137 (461)
+.|. .++|++++.+++.. .| +...|+.--..+...+ +++++...++.++..+ |.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 4444 46899999988884 45 4456777777777888 8999999999988876 44555665544444 445
Q ss_pred ---CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc----
Q 012539 138 ---GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGE--KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL---- 205 (461)
Q Consensus 138 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 205 (461)
+++++++.+++.+.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 788999999988873 57788988888888888888 9999999998864 3366677666555666665
Q ss_pred --HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHH
Q 012539 206 --VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE-ALDVINKM-PM----KPHAGAWGALLNACRMYKNTEMG 277 (461)
Q Consensus 206 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~~~~~~a 277 (461)
++++++.+..++.. -+-|...|+.+-..+.+.|+..+ +..+..++ .. ..+...+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 78888888877653 23356777777777777777443 44566655 11 23556777777777778888888
Q ss_pred HHHHHHHhh-ccCCCcchHHHHHH
Q 012539 278 ELASRKLVE-LETKNHGAYVLLSN 300 (461)
Q Consensus 278 ~~~~~~~~~-~~p~~~~~~~~l~~ 300 (461)
.++++.+.+ .+|.+...|...++
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 888888775 67776666554443
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=1.9e-07 Score=80.56 Aligned_cols=168 Identities=8% Similarity=-0.064 Sum_probs=103.5
Q ss_pred HHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC----CHHHHHHHHHHHH
Q 012539 42 ARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG----ALDQGRWAHVYIE 116 (461)
Q Consensus 42 A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 116 (461)
|.+.|++..+ .++.++..|...|...+++++|+..|++..+.| +...+..+...+.. + +.++|...+.+..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444443332 356666666666666677777777777666654 44555555555555 4 6777777777766
Q ss_pred HcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----HHHHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 012539 117 RNRLKMTVTLGTALVDMYSK----CGNMNKAMDFFWGMKERN-----VYTWTSVIGGLAM----NGAGEKSLELFSLMKQ 183 (461)
Q Consensus 117 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 183 (461)
+.+ ++..+..|..+|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 554 34455556666665 667777777777666432 4667777777776 6677777777777766
Q ss_pred cCCCCCHHHHHHHHHHHhhc-C-----cHHHHHHHHHHhhh
Q 012539 184 AGVRPNEVTFVSVLRGCCVV-G-----LVEEGREHFDSMRR 218 (461)
Q Consensus 184 ~g~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~ 218 (461)
. .++...+..|...|... | +.++|..+|+...+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4 22334555555555432 2 67777777776654
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=4.5e-08 Score=98.15 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=124.1
Q ss_pred cCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 012539 137 CGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (461)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998774 367899999999999999999999999998852 334778888999999999999999999
Q ss_pred HHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHhhc
Q 012539 214 DSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMY---KNTEMGELASRKLVEL 287 (461)
Q Consensus 214 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 287 (461)
++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++.+.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998763 34 5788999999999999999999999987 3344 466888888899999 9999999999999999
Q ss_pred cCCCcchHHHHH
Q 012539 288 ETKNHGAYVLLS 299 (461)
Q Consensus 288 ~p~~~~~~~~l~ 299 (461)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=2.8e-07 Score=80.34 Aligned_cols=184 Identities=12% Similarity=0.031 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN-V---YTWT 159 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 159 (461)
+...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|+..|++..+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788899999999999999999865322 235677789999999999999999999763 32 2 2566
Q ss_pred HHHHHHHh------------------CCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 160 SVIGGLAM------------------NGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 160 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
.+..++.. .|++++|+..|+++.+. .|+. ....... +.+. +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~~------~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLVF------LKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHHH------HHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHHH------HHHHH----
Confidence 66666654 57899999999999884 4553 2221111 1000 11111
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA----GAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 221 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
......+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++.+....|++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 012235677889999999999999887 323442 4678888889999999999999999998888764
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=7.4e-08 Score=96.56 Aligned_cols=147 Identities=9% Similarity=-0.100 Sum_probs=111.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 45678888899999999999999999998764 46789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA---GRLDEALDVINKM 252 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 252 (461)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998853 335778888999999999999999999998753 223577888999999999 9999999999887
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=2e-08 Score=81.58 Aligned_cols=60 Identities=5% Similarity=-0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (461)
+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|...+..+++
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3334444444444444444444444321 11233333334444444444444444444433
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=5.5e-08 Score=81.26 Aligned_cols=156 Identities=8% Similarity=-0.030 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.... .+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHHH--
Confidence 34466677777777777777777663 35567777777777777777777777776543 2333222 1111000
Q ss_pred CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
+...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000111123333332 1233 3456666666667777777777777
Q ss_pred HHHhhccCCC--cchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 282 RKLVELETKN--HGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 282 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+++.+.+|.. ...+..+..+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 7777776653 3466777777777777777777766543
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=4e-07 Score=78.30 Aligned_cols=145 Identities=6% Similarity=-0.082 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 206 (461)
+..+...+...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34577788888999999999998888888888889999999999999999999887753 33567777888888888888
Q ss_pred HHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH-AGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
++|...|+...+. .|+..... +...| +...|+ ...|..+...+...|++++|...++++.
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887653 22111000 00000 012232 2466667777778888888888888888
Q ss_pred hccCCC
Q 012539 286 ELETKN 291 (461)
Q Consensus 286 ~~~p~~ 291 (461)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 887765
No 113
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.80 E-value=6.2e-07 Score=90.68 Aligned_cols=243 Identities=6% Similarity=-0.049 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCchHH
Q 012539 55 IAWNAMLAGYAQCG-------KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTL 126 (461)
Q Consensus 55 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 126 (461)
..|...+.---.++ ..+.+..+|++.+.. .+-+...|...+..+...|+.++|. .+++..+... |.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 35666665443333 134466788888775 3347778888888888889988996 9999999764 667778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE-------------RN------------VYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
+...+...-+.|+++.|.++|+.+.. |+ ...|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999999999999999998763 21 236888888888899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhh-cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---
Q 012539 182 KQAGVRPNEVTFVSVLRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP--- 256 (461)
Q Consensus 182 ~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--- 256 (461)
.+.-..+....|...+..-.+ .++.+.|..+|+..++.+ +.+...+...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 875111223334332222223 356899999999998753 335667778888888999999999999987 3233
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 257 -HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 257 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
....|...+.--..+|+.+.+..+.+++.+..|++. ....++.-|
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 235899999999999999999999999999999875 334444433
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=2.4e-06 Score=77.60 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CCHHHHHHHHHHH----HhC---CC
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG--NMNKAMDFFWGMKE---RNVYTWTSVIGGL----AMN---GA 170 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 170 (461)
...++|......++..+ |.+..+|+.-...+...| +++++++.++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34578999999999876 556778888888888888 99999999998874 4667888776666 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH--HHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC------H
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE--EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR------L 242 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~ 242 (461)
+++++++++++.+.. +-+..+|..-.-.+.+.|.++ ++++.++.+++. -+-|...|+.-...+.+.|. +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999998863 336777777666777778877 999999999864 23356677766666777676 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH-HHHHHHHHhhcc---CCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM-GELASRKLVELE---TKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+++++.++++ ...| |...|+-+-..+...|+... +..+++++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8899888776 3344 66789988888888887444 666777777765 7788899999999999999999999999
Q ss_pred HHHh
Q 012539 317 IMKA 320 (461)
Q Consensus 317 ~m~~ 320 (461)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=1.5e-06 Score=79.04 Aligned_cols=160 Identities=9% Similarity=-0.069 Sum_probs=109.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGV-RPNEV----TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGC 231 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 231 (461)
.+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...++.+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667777888888888887765321 12211 2224555566677888888888777652111222 225777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-------CC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHH
Q 012539 232 LVDLYGRAGRLDEALDVINKMP-------MK-PHA-GAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYV 296 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~-------~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 296 (461)
+...|...|++++|...++++- .. +.. .++..+...|...|++++|...++++.++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7888888888888887776651 11 222 267788888999999999999999988765332 45788
Q ss_pred HHHHHHhhcCC-hhHHHHHHHHHHh
Q 012539 297 LLSNIYAESKN-WDRVINVRQIMKA 320 (461)
Q Consensus 297 ~l~~~~~~~g~-~~~a~~~~~~m~~ 320 (461)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887754
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=3.5e-07 Score=78.63 Aligned_cols=143 Identities=13% Similarity=-0.118 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 104 (461)
.+..+...+.+.|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344555666677777777777777666666677777777777777777777777666543 2244555556666666666
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
+++|...+..+.+.........+ ...|. .........|..+..+|...|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDY-------KILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEEC-------GGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHH-------HHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666554311110000 00000 000012356677777777777777777777777663
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.5e-07 Score=86.41 Aligned_cols=220 Identities=10% Similarity=-0.030 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (461)
.|++++|.+++++..+....+ +.. .+++++|...|.+. ...+...|++++|...+.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 567888888887644211100 111 35666666666554 2345556667777666666
Q ss_pred HHHcCC---CC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 115 IERNRL---KM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKE-------R--NVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 115 ~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
...... .+ ...+++.+..+|.+.|++++|...|++... + -..+|..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 554211 11 134566677777777777777777765432 1 13467777777777 888888888887
Q ss_pred HHHcCCC---C--CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc---CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 181 MKQAGVR---P--NEVTFVSVLRGCCVVGLVEEGREHFDSMRREY---GIEPW-LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 181 m~~~g~~---p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
..+.... + ...++..+...+...|++++|...|++..+.. +..+. ...+..++..+...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7552111 1 13567777788888888888888888776531 11111 23566666777778888888888877
Q ss_pred CCCCCC---HH---HHHHHHHHHHhcCChHHHHH
Q 012539 252 MPMKPH---AG---AWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 252 ~~~~p~---~~---~~~~ll~~~~~~~~~~~a~~ 279 (461)
.-..|+ .. ....++.++ ..++.+.+..
T Consensus 221 al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 533332 11 233444444 4566555544
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=5.1e-07 Score=82.18 Aligned_cols=165 Identities=9% Similarity=-0.040 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC--CccC--h
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-----VTFVSVLRGCCVVGLVEEGREHFDSMRREYG--IEPW--L 226 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 226 (461)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+....+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777778888888887777664221111 1233344556667788888888877654211 1111 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC------C
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM----PMKPH-----AGAWGALLNACRMYKNTEMGELASRKLVELETK------N 291 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~ 291 (461)
.+++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++.+..+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888877665 11122 147777888899999999999999988865432 1
Q ss_pred cchHHHHHHHHhhcCChhHH-HHHHHHHHh
Q 012539 292 HGAYVLLSNIYAESKNWDRV-INVRQIMKA 320 (461)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 320 (461)
..+|..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45788899999999999999 776776543
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=6.7e-08 Score=87.50 Aligned_cols=190 Identities=8% Similarity=-0.115 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRG 199 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 199 (461)
...+..+...+.+.|++++|...|++... .+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34445555666666666666666665442 24556666666666666666666666666553 33 34555566666
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
+...|++++|...|....+. .|+ ...+...+....+..+...... .......++......+ ..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence 66666666666666665532 221 1111112222111111111111 1112222333333322 3322 57888888
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHhhc-CChhHHHHHHHHHHhC
Q 012539 279 LASRKLVELETKNHGAYVLLSNIYAES-KNWDRVINVRQIMKAK 321 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 321 (461)
..++++.+.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888888766666666666665 6688888888877553
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=3.8e-08 Score=79.86 Aligned_cols=102 Identities=8% Similarity=-0.046 Sum_probs=89.3
Q ss_pred CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 221 GIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 221 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++.+++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44553 567778888999999999999999888 3445 56689999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 298 LSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+..+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988754
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=5.8e-07 Score=81.75 Aligned_cols=202 Identities=9% Similarity=0.006 Sum_probs=144.8
Q ss_pred HHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CC
Q 012539 12 QKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFHLMQIHD-VK 86 (461)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 86 (461)
..-++.+. .|+..+...+...+.-. + ..+|..-...+.. .+...+..+...|++++|...+++..... ..
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~ 108 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC
Confidence 33445553 58888877777765422 2 2334433333333 33445778899999999999999988743 22
Q ss_pred cCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-c----hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 012539 87 LNEV----SMVSVLSACTHLGALDQGRWAHVYIERNRLKM-T----VTLGTALVDMYSKCGNMNKAMDFFWGMKE----- 152 (461)
Q Consensus 87 p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 152 (461)
|+.. .+..+...+...+++++|...+.++.+..... + ..+++.+...|...|++++|...|++..+
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 3321 33456777788889999999999999843332 2 33688999999999999999999988762
Q ss_pred -CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhhcC-cHHHHHHHHHHhhh
Q 012539 153 -RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRPN-EVTFVSVLRGCCVVG-LVEEGREHFDSMRR 218 (461)
Q Consensus 153 -~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 218 (461)
.+ ..+|..+...|.+.|++++|++.+++..+. +..+. ..+|..+..++...| ..++|...+++...
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 12 347889999999999999999999988652 22233 667888889999999 46999999988765
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=2.1e-07 Score=72.89 Aligned_cols=108 Identities=9% Similarity=-0.005 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACR 269 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 269 (461)
.+......+.+.|++++|...|++.++. -+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444555556666666666666655432 1223555566666666666666666666555 2233 3456677777777
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
..|++++|...|+++.+++|++..++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777666655543
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=2.7e-07 Score=78.57 Aligned_cols=147 Identities=12% Similarity=0.000 Sum_probs=69.7
Q ss_pred HcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHhccCCHH
Q 012539 35 KCGDVDLARK---MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI----HDVKL-NEVSMVSVLSACTHLGALD 106 (461)
Q Consensus 35 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~t~~~ll~~~~~~~~~~ 106 (461)
..|++++|.+ ++..-+.....+++.+...|...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3556666666 44333333445566666666666666666666665544 11111 2234444555555555555
Q ss_pred HHHHHHHHHHHc----CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCCh
Q 012539 107 QGRWAHVYIERN----RLK--MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAG 171 (461)
Q Consensus 107 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 171 (461)
+|...+.+..+. +-. .....+..+...|...|++++|...|++... .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555554432 101 1123344455555555555555555554331 11 12234444555555555
Q ss_pred HHHHHHHHHH
Q 012539 172 EKSLELFSLM 181 (461)
Q Consensus 172 ~~A~~~~~~m 181 (461)
++|.+.+++.
T Consensus 164 ~~A~~~~~~a 173 (203)
T 3gw4_A 164 LEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=6.7e-07 Score=73.25 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 012539 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRM 270 (461)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 270 (461)
+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|...+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444445555555555555555432 1123445555555666666666666666554 2223 44567777777888
Q ss_pred cCChHHHHHHHHHHhhccCCCcchHHHHHH--HHhhcCChhHHHHHHHHHHh
Q 012539 271 YKNTEMGELASRKLVELETKNHGAYVLLSN--IYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 320 (461)
.|++++|...++++.+..|.+...+..+.. .+...|++++|.+.+.....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888888887776644444 47788888998888876643
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=2.6e-07 Score=72.45 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=89.2
Q ss_pred CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHH
Q 012539 222 IEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298 (461)
Q Consensus 222 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 298 (461)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 466778889999999999999999987 3445 567899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHhC
Q 012539 299 SNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=9.3e-06 Score=79.44 Aligned_cols=302 Identities=6% Similarity=-0.146 Sum_probs=169.5
Q ss_pred CCchHHHHHHhcCCC--CCHHHHHHHHHHHHHcCC-HHHHHHHHhhCC------CCChhHHHHHHHHHH----HcCChHH
Q 012539 6 GCLGYCQKVFDGIHE--PDVVCQTAMISACAKCGD-VDLARKMFDEMP------ERDPIAWNAMLAGYA----QCGKSRE 72 (461)
Q Consensus 6 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~------~~~~~~~~~li~~~~----~~g~~~~ 72 (461)
|+.+.+..+|+..+. |++..|...+....+.++ .+....+|+... ..+...|...+..+. .+|+.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 556677777777653 777777777776666553 334455555422 124556666665543 3455677
Q ss_pred HHHHHHHHHHCCCCcCHH-HHHHHHHHHh-------------ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-
Q 012539 73 ALHLFHLMQIHDVKLNEV-SMVSVLSACT-------------HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC- 137 (461)
Q Consensus 73 A~~~~~~m~~~~~~p~~~-t~~~ll~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 137 (461)
+..+|++.+... ..+.. .|......-. ..+.+..|+.++..+...-...+...|...++.-...
T Consensus 108 vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 108 IRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 777777777621 11111 1111111000 0112223333443333211011233454444442221
Q ss_pred -CC-----HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 138 -GN-----MNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 138 -g~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
|- .+.+..+|+++.. .+...|-..+.-+.+.|+.++|.++|++.... |+...+.. +|......++
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~ 260 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA 260 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH
T ss_pred ccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH
Confidence 11 2345667777653 35677888888888899999999999999886 44322211 1222111111
Q ss_pred HHHHHHHhhhhc---C-----C---ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCCh
Q 012539 209 GREHFDSMRREY---G-----I---EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP--HAGAWGALLNA-CRMYKNT 274 (461)
Q Consensus 209 a~~~~~~~~~~~---~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~-~~~~~~~ 274 (461)
. ++.+...+ . . ......|...+..+.+.+.++.|..+|++. ..| +..+|...... +...++.
T Consensus 261 ~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 261 V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh
Confidence 1 22222111 0 0 011355777777777888899999999988 233 33444433333 2233479
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
+.|..+|+.+.+..|+++..+...+....+.|+.+.|..+|+..
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999988888777777788788899999999999986
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1.9e-06 Score=78.26 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC---Cc--h
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE------VSMVSVLSACTHLGALDQGRWAHVYIERNRLK---MT--V 124 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 124 (461)
.+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|...+.+..+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677777777777777766654221 11 11222333344455555555555555432111 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN-----VYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
.+++.+...|...|++++|...|++..+ ++ +.+|..+...|...|++++|+..+++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 2444455555555555555555544320 11 124444444444444444444444444
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=3.3e-07 Score=78.00 Aligned_cols=149 Identities=13% Similarity=-0.005 Sum_probs=113.4
Q ss_pred ccccCCchHHHH---HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC------C---ChhHHHHHHHHHHHcCC
Q 012539 2 YAELGCLGYCQK---VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE------R---DPIAWNAMLAGYAQCGK 69 (461)
Q Consensus 2 y~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~---~~~~~~~li~~~~~~g~ 69 (461)
....|++++|.+ .+..-+.....++..+...|...|++++|...|++..+ . ...+++.+...|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356899999999 77664445678899999999999999999999987653 1 34578899999999999
Q ss_pred hHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCc--hHHHHHHHHHHHhcC
Q 012539 70 SREALHLFHLMQIH----DVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNR---LKMT--VTLGTALVDMYSKCG 138 (461)
Q Consensus 70 ~~~A~~~~~~m~~~----~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g 138 (461)
+++|++.|++.... +-.| ....+..+...+...|++++|...+.+..+.. ..+. ..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987653 2111 23467778888999999999999999887431 1121 334577899999999
Q ss_pred CHHHHHHHHHhc
Q 012539 139 NMNKAMDFFWGM 150 (461)
Q Consensus 139 ~~~~A~~~~~~~ 150 (461)
++++|...|++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999888754
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=1.7e-06 Score=70.73 Aligned_cols=93 Identities=8% Similarity=-0.079 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+....+.. +.+..++..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555556666666666666666555532 1234444444445555555555555555544432 22333344444444
Q ss_pred HhcCCHHHHHHHHHh
Q 012539 135 SKCGNMNKAMDFFWG 149 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~ 149 (461)
.+.|++++|...|++
T Consensus 92 ~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 92 MALGKFRAALRDYET 106 (166)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHH
Confidence 444444444444443
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=9.3e-07 Score=68.24 Aligned_cols=112 Identities=21% Similarity=0.172 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PM-KPHAGAWGALLNACR 269 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 269 (461)
.+..+...+...|++++|..++..+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444555555555555555555432 1123445555555556666666666655554 11 224556667777777
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 305 (461)
..|++++|...++++.+..|.++..+..+..++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 778888888888888888887777777776666543
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=2.1e-07 Score=75.26 Aligned_cols=97 Identities=7% Similarity=-0.035 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|+++.++..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556677778888888888888888876 3334 5668888888888999999999999999999999988999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 012539 303 AESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887664
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=1e-06 Score=68.61 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACR 269 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 269 (461)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444455555555555555554432 1123445555555555666666666555554 1223 3456666667777
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCCh
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 308 (461)
..|++++|...++++.+..|.+...+..+..++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 788888888888888888888777777777777776654
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=7.3e-05 Score=68.71 Aligned_cols=179 Identities=11% Similarity=-0.022 Sum_probs=121.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
++.+-......+..++|++++.+++.. .| +..+|+.--..+...+ .++++...++.++... +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 333334444455567888888888874 34 4456777767777777 5888888888888775 55667777666666
Q ss_pred Hhc-C-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 135 SKC-G-NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGE--------KSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 135 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
.+. + ++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 665 6 78888888888875 46677877666666666666 8888888888763 336677776666666
Q ss_pred hcCc-------HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 202 VVGL-------VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 202 ~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
+.+. ++++++.+..++.. .+-|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 6654 57777777776642 22356666666666666554
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=9.7e-07 Score=69.16 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
..+..+...|...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.+...+..+..++..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34444444444444444444444443 1122 344566666667777777777777777777777776677777766665
Q ss_pred cC
Q 012539 305 SK 306 (461)
Q Consensus 305 ~g 306 (461)
.|
T Consensus 131 ~~ 132 (133)
T 2lni_A 131 QY 132 (133)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=8e-07 Score=71.94 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=37.3
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHH
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 174 (461)
.+.+.|++++|...|+.+++.. |.+...|..+..+|.+.|++++|+..|++.. ..++..|..+..+|.+.|++++|
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 3333333333333333333332 2233344444444444444444444444433 12334444555555555555555
Q ss_pred HHHHHHHHH
Q 012539 175 LELFSLMKQ 183 (461)
Q Consensus 175 ~~~~~~m~~ 183 (461)
+..|++..+
T Consensus 124 ~~~~~~al~ 132 (151)
T 3gyz_A 124 KECFELVIQ 132 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=9.7e-07 Score=82.02 Aligned_cols=144 Identities=13% Similarity=-0.006 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 233 (461)
+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+..+-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 34566667777777777777777777776642 221000 0011100000 0135677788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
.+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++.+++|.+..++..+..++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777 3334 5668888888899999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHH
Q 012539 312 -INVRQIMK 319 (461)
Q Consensus 312 -~~~~~~m~ 319 (461)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=4.2e-06 Score=64.43 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
.|..+...+...|++++|++.|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 36 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKAL 36 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=1.7e-06 Score=76.94 Aligned_cols=180 Identities=7% Similarity=-0.080 Sum_probs=108.8
Q ss_pred HcCCHHHHHHHHhhCCCC---ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCcCH---------------
Q 012539 35 KCGDVDLARKMFDEMPER---DPIAWNAM-------LAGYAQCGKSREALHLFHLMQIHDVKLNE--------------- 89 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~---~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------- 89 (461)
..++.+.|.+.|.+..+- ....|+.+ ...+.+.++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 589999999999987642 46788888 5666666667777776666544 22321
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----HHH
Q 012539 90 -------VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-N----VYT 157 (461)
Q Consensus 90 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~----~~~ 157 (461)
.........+...|++++|.+++..+...+ +-+. ....+...+.+.|++++|+..|+..... + ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 122234455566677777777766665543 2222 4444555666777777777777655432 1 235
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666667777777777777776654322143 22334445556666777777777766654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=5.1e-07 Score=81.62 Aligned_cols=188 Identities=9% Similarity=-0.077 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 012539 90 VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLA 166 (461)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 166 (461)
..+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...|++..+ .+...|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444445555555555555555555443 33455555566666666666666666665543 24556666666777
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
..|++++|+..|++..+.. |+. ..+...+....+ ..++..... ... ....++......+...+ .|+.++|
T Consensus 84 ~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 7777777777776665421 210 011111111111 111111111 111 13344444444443332 5777888
Q ss_pred HHHHHhC-CCCCCHHHH-HHHHHHHHhc-CChHHHHHHHHHHhhc
Q 012539 246 LDVINKM-PMKPHAGAW-GALLNACRMY-KNTEMGELASRKLVEL 287 (461)
Q Consensus 246 ~~~~~~~-~~~p~~~~~-~~ll~~~~~~-~~~~~a~~~~~~~~~~ 287 (461)
.+.+++. ...|+.... ..+-..+... +.++++..+|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8777666 445655433 3333334444 5677888888887654
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=3.5e-06 Score=74.91 Aligned_cols=131 Identities=9% Similarity=-0.122 Sum_probs=63.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHh
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGR 238 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 238 (461)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 334444455555555555444332 233223333333444555555555555433210 0 110 1234455555666
Q ss_pred cCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHH
Q 012539 239 AGRLDEALDVINKMPMK---PH--AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296 (461)
Q Consensus 239 ~g~~~~A~~~~~~~~~~---p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 296 (461)
.|++++|+..|++.... |. ...+.....++...|+.++|...|+++...+|. ...+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 66666666666555111 32 124444455566666777777777777666665 43333
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=4e-06 Score=65.17 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 44444445555555555555555444421 1133344444444444444444444444444432 222333333444444
Q ss_pred hcCCHHHHHHHHHh
Q 012539 136 KCGNMNKAMDFFWG 149 (461)
Q Consensus 136 ~~g~~~~A~~~~~~ 149 (461)
+.|++++|...|++
T Consensus 92 ~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 92 SLNKHVEAVAYYKK 105 (131)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 44444444444443
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=1.7e-06 Score=65.40 Aligned_cols=99 Identities=14% Similarity=0.042 Sum_probs=80.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC--CcchHHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK--NHGAYVLLSN 300 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 300 (461)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556777788888888888888888776 2233 5567888888888899999999999999999988 8888999999
Q ss_pred HHhhc-CChhHHHHHHHHHHhCCC
Q 012539 301 IYAES-KNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 301 ~~~~~-g~~~~a~~~~~~m~~~g~ 323 (461)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999988876543
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=7.5e-05 Score=68.27 Aligned_cols=230 Identities=12% Similarity=-0.003 Sum_probs=140.2
Q ss_pred HHcCChH-HHHHHHHHHHHCCCCcCH-HHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 65 AQCGKSR-EALHLFHLMQIHDVKLNE-VSMVSVLSACTHLGA----------LDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 65 ~~~g~~~-~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
.+.|.+. +|++++.++... .|+. ..|+.--..+...+. ++++..++..++... |-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455543 678888877764 4443 344444333333332 567777777777765 556677776666
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---
Q 012539 133 MYSKCG--NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGA-GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV--- 203 (461)
Q Consensus 133 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 203 (461)
.+.+.| .+++++.+++.+.+ +|..+|+--.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666777 47888888887763 567788877777777777 488888888887753 33566666554444443
Q ss_pred -----------CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHH
Q 012539 204 -----------GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRA-----------GRLDEALDVINKM-PMKPHAG 259 (461)
Q Consensus 204 -----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 259 (461)
+.++++.+.+...+.. .| |...|+-+-..+.+. +.++++++.++++ ...||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 4567777777776642 34 456665554444444 3456666666666 344554
Q ss_pred HHHHHHHH-----HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 260 AWGALLNA-----CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 260 ~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
.|..+-.+ ....+..++....+.++.+++|....-|.-+...+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 34322211 11345566777777777777777666666554443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.4e-06 Score=72.46 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=74.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhcCCH--HH
Q 012539 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM-YSKCGNM--NK 142 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 142 (461)
..|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566677777777666543 2355666666677777777777777777766654 3355566666666 6667776 77
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 143 AMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 143 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
|...|+.... .+...|..+...|...|++++|+..|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777766542 34566777777777777777777777777663
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=3.9e-06 Score=65.62 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 4455556666666666666666666655432 1244455555555555555555555555555543 2334444445555
Q ss_pred HHhcCCHHHHHHHHHhc
Q 012539 134 YSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~ 150 (461)
|.+.|++++|.+.|++.
T Consensus 94 ~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 55555555555555443
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=5.9e-07 Score=74.83 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=73.2
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--HHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA-CRMYKNT--EMG 277 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~~--~~a 277 (461)
.|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45555555555555432 1223455566666666666666666666555 1122 44455566666 5667776 777
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
...++++.+..|.+..++..++.+|...|++++|...+++..+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777777777777777778888888888888777776643
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=1.2e-06 Score=70.12 Aligned_cols=96 Identities=13% Similarity=-0.038 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888776 3334 55678888888888899999999999999999988888888999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 012539 304 ESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~ 321 (461)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999988887654
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=3.4e-06 Score=78.32 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=83.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+..+- +....++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 34567777788888888888888888777643 221000 000000000 001345555666
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 209 (461)
+|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 355666666777777777777777777766642 22355566666666666776666
Q ss_pred -HHHHHHhhh
Q 012539 210 -REHFDSMRR 218 (461)
Q Consensus 210 -~~~~~~~~~ 218 (461)
..++..|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 345555543
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=2e-07 Score=79.41 Aligned_cols=172 Identities=9% Similarity=-0.063 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
..+......|++++|.+.|+..... ....|..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 3445556667777777777654432 4456777888888899999999999888773 2221100000 0
Q ss_pred HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
...-. .. .....+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|...+++
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 00 01245666777777888888888877766 2233 556788888889999999999999999
Q ss_pred HhhccCCCcchHHHHHHHHhhcCChhHHH-HHHHHHHhC
Q 012539 284 LVELETKNHGAYVLLSNIYAESKNWDRVI-NVRQIMKAK 321 (461)
Q Consensus 284 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 321 (461)
+.++.|.+..++..+..++...++.+++. ..+..|...
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999889999998888887777766 455555433
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.8e-06 Score=67.25 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.+|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666677777777777777665 2233 456777777778888888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 012539 305 SKNWDRVINVRQIMKAK 321 (461)
Q Consensus 305 ~g~~~~a~~~~~~m~~~ 321 (461)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888877653
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=2.5e-06 Score=68.81 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+..+...+.+.|++++|...|+... ..+...|..+..+|...|++++|+..|++..... +.+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3344445555666666666666665543 2345556666666666666666666666665532 12344555555566
Q ss_pred hhcCcHHHHHHHHHHhhh
Q 012539 201 CVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~ 218 (461)
...|++++|...|+..++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665543
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=9e-07 Score=75.30 Aligned_cols=161 Identities=12% Similarity=-0.029 Sum_probs=79.0
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCH
Q 012539 29 MISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105 (461)
Q Consensus 29 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 105 (461)
.+......|++++|.+.|+...+. ....|..+...+...|++++|+..|++..... |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 334445567777777777654332 45577888888889999999999999888742 211100000 00
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
..-. . .....++..+..+|.+.|++++|...|+... ..+..+|..+..+|...|++++|++.|++..
T Consensus 80 ~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 80 LDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0 0012344445555555666666665555543 2344556666666666666666666666665
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 012539 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 183 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 210 (461)
+.. +-+...+..+..++...++.+++.
T Consensus 150 ~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 531 123444445555555555555444
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=7e-05 Score=68.84 Aligned_cols=215 Identities=13% Similarity=0.031 Sum_probs=155.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC-C-ChHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG-NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN-G-AGEKSL 175 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~ 175 (461)
....++|.++...++..+ +.+..+|+.-...+...| .+++++++++.+.. ++..+|+.-...+.+. + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344568899999999876 556778887777888888 59999999998874 4778899888888776 7 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH--------HHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC------
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE--------EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR------ 241 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 241 (461)
++++++.+.. +-|..+|+.-.-...+.|..+ ++++.++.+++. -+-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 9999998753 335666665554555555554 889999888764 23367778888878888776
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHhhcc------CCCc
Q 012539 242 -LDEALDVINKM-PMKP-HAGAWGALLNACRMYKNT--------------------EMGELASRKLVELE------TKNH 292 (461)
Q Consensus 242 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~ 292 (461)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888776 3345 566888777777776654 22233333332222 4566
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+...|+.+|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999864
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=4.1e-06 Score=66.09 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++.+..|.++.++..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566667777777777777777777665 2233 4557777777788888888888888888888888888888888888
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 012539 303 AESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888887654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=7.9e-06 Score=62.13 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..+.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33334444444444444444444433 1112 2334555555555566666666666666666665554444443
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=3.5e-06 Score=69.12 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012539 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA 267 (461)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 267 (461)
..+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|...|++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444455555555555555555555432 22 3444445555555555555555555444 2222 23344444444
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcc
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
+...|++++|...++++.++.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 55555555555555555555554444
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=2.6e-06 Score=66.07 Aligned_cols=94 Identities=13% Similarity=0.024 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 305 (461)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|+++.++..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677888899999999999887 3345 5668888888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 012539 306 KNWDRVINVRQIMKAK 321 (461)
Q Consensus 306 g~~~~a~~~~~~m~~~ 321 (461)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.4e-05 Score=63.74 Aligned_cols=107 Identities=14% Similarity=-0.038 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 012539 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLN 266 (461)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 266 (461)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33334444444444444444444331 2232 334444555555555555555555444 1122 3445666666
Q ss_pred HHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
++...|++++|...++++.+..|.+...+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 667777777777777777777777665555554443
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=6e-06 Score=62.81 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
+..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456677788888899999999988887 2234 66788888888999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 012539 304 ESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g 322 (461)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999887643
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=8.5e-06 Score=65.01 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
+...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++.+..|.+...+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888899999999999999999987 55677 568888888899999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHhC
Q 012539 300 NIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.29 E-value=1.3e-05 Score=62.60 Aligned_cols=60 Identities=7% Similarity=-0.220 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 116 (461)
++..|...+.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|...+.+.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444445555555555555555444421 1123334444444444444444444444433
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.4e-05 Score=75.04 Aligned_cols=97 Identities=8% Similarity=-0.089 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-----
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQA--GV--RPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----- 225 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 225 (461)
.++..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++.......-.++
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 35556666666666666666666665432 11 111 345666667777777777777777665532111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
...+..+...+...|++++|...|.+.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 234555666667778888777666544
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=1.4e-05 Score=78.00 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcH
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 206 (461)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 45566778888888888887653 457788888888888888888888888888752 22466777888888888888
Q ss_pred HHHHHHHHHhhhhcCCcc-ChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 012539 207 EEGREHFDSMRREYGIEP-WLEHYGCLVDL--YGRAGRLDEALDVIN 250 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 250 (461)
++|...|+++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888887753 33 34455555555 777788888888877
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=0.00023 Score=68.09 Aligned_cols=189 Identities=7% Similarity=-0.078 Sum_probs=133.8
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC-----C---------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCcC
Q 012539 30 ISACAKCGDVDLARKMFDEMPER-----D---------------PIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLN 88 (461)
Q Consensus 30 i~~~~~~g~~~~A~~~~~~m~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 88 (461)
...+.+.|++++|++.|..+.+. + ..++..|...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567789999999998875421 0 1247789999999999999999998876521 1112
Q ss_pred HH----HHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 012539 89 EV----SMVSVLSACTHLGALDQGRWAHVYIER----NRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE------- 152 (461)
Q Consensus 89 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 152 (461)
.. +.+.+-..+...|+.+.+..++..... .+..+ -..++..|...|...|++++|..++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 233333444567889999988887664 22222 245777899999999999999999887642
Q ss_pred -C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 153 -R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVR-P-N--EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 153 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+ .+.+|..++..|...|++++|..++++.... .+. | . ...+..+...+...+++++|...|....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2467888999999999999999999887542 121 2 1 24455666677788999999888877764
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=7.5e-06 Score=65.36 Aligned_cols=99 Identities=9% Similarity=-0.103 Sum_probs=54.9
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
.+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344444555555555555555432 1123445555555555556666665555554 2223 3345556666677777
Q ss_pred ChHHHHHHHHHHhhccCCCcchH
Q 012539 273 NTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
++++|...++++.+..|.++...
T Consensus 101 ~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 101 DLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CHHHHHHHHHHHHHhCCCCcchH
Confidence 77777777777777777665443
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=8.8e-06 Score=63.28 Aligned_cols=104 Identities=11% Similarity=-0.038 Sum_probs=52.0
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
.+...+...|++++|...|...++. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3334444444444444444444321 1112344444555555555555555555444 2223 3345555666666666
Q ss_pred ChHHHHHHHHHHhhcc------CCCcchHHHHHH
Q 012539 273 NTEMGELASRKLVELE------TKNHGAYVLLSN 300 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 300 (461)
++++|...++++.+++ |.+......+..
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 87 EYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 6667777777766666 555444444433
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=2.8e-05 Score=63.58 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
.+..+...|.+.|++++|+..|++... .+...|..+..+|.+.|++++|+..|++..+.. +.+...+..+..++..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334444444444444444444444331 234444444444555555555555555444431 1123444444444444
Q ss_pred cCcHHHHHHHHHHhh
Q 012539 203 VGLVEEGREHFDSMR 217 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~ 217 (461)
.|++++|...|+..+
T Consensus 92 ~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 92 MADYKGAKEAYEKGI 106 (164)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 555555555554444
No 168
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.23 E-value=0.00037 Score=68.08 Aligned_cols=200 Identities=9% Similarity=-0.075 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+.+..++++++... +.+..+|...+..+.+.|+.++|..+|++... | +...|. .|+...+.++. ++.+.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHH
Confidence 34566777776653 44566676677777777777777777765432 2 222222 12221111121 222221
Q ss_pred cC---------CCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC-CHHHHHHHHH
Q 012539 184 AG---------VRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG-RLDEALDVIN 250 (461)
Q Consensus 184 ~g---------~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~ 250 (461)
.- ..+ ....|...+....+.+..+.|+.+|... +. . ..+...|...+..-...+ +.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 001 1234555566666677788888888877 32 1 123344443333333333 5888888887
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 251 KM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 251 ~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.. ..-| ++..|...+.-....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66 1112 23456666666777788888888888872 3345666666666677888888887777654
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=4.5e-06 Score=65.31 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc-------hHHHH
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG-------AYVLL 298 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 298 (461)
.+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..+++++++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455666677777777777777665 3334 3456777777777777788888877777777665432 55667
Q ss_pred HHHHhhcCChhHHHHHHHHHHh
Q 012539 299 SNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..+|...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777788888888888877654
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.00072 Score=61.74 Aligned_cols=217 Identities=13% Similarity=0.013 Sum_probs=153.7
Q ss_pred ccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 012539 101 HLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN----------MNKAMDFFWGMK---ERNVYTWTSVIGGLA 166 (461)
Q Consensus 101 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 166 (461)
+.|. .++|......++..+ |.+..+|+.=-......|. +++++.+++.+. .++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3444 457899999998876 4455666644444433333 678888888876 357889999888888
Q ss_pred hCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc-HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc----
Q 012539 167 MNGA--GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL-VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA---- 239 (461)
Q Consensus 167 ~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 239 (461)
+.|+ +++++++++++.+.. +-|...|+.-.-.+...|. .+++++.+..+++. -+.|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999864 3367777766666677777 68999999998864 233566777666666554
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhccCCCcchHH
Q 012539 240 ----------GRLDEALDVINKM-PMKP-HAGAWGALLNACRMY-----------KNTEMGELASRKLVELETKNHGAYV 296 (461)
Q Consensus 240 ----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~ 296 (461)
+.++++++.+.+. ...| |...|+-+-..+... +.+++++..++++.++.|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888777 3344 556777655555444 4578999999999999999855544
Q ss_pred HHHHH---HhhcCChhHHHHHHHHHHhC
Q 012539 297 LLSNI---YAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 297 ~l~~~---~~~~g~~~~a~~~~~~m~~~ 321 (461)
.++.. ....|..+++...+.++++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 44332 22467788888888888763
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=1.4e-05 Score=60.18 Aligned_cols=94 Identities=14% Similarity=-0.038 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALV 131 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 131 (461)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344445555555555555555555544432 1233344444444444444444444444444432 12 233333344
Q ss_pred HHHHhc-CCHHHHHHHHHh
Q 012539 132 DMYSKC-GNMNKAMDFFWG 149 (461)
Q Consensus 132 ~~~~~~-g~~~~A~~~~~~ 149 (461)
.+|.+. |++++|.+.|+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 444444 444444444433
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.7e-05 Score=62.44 Aligned_cols=99 Identities=9% Similarity=-0.076 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA 267 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 267 (461)
...+..+...+...|++++|...|...... .+.+...+..+..+|...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 344444444444555555555555444432 1112344455555555555555555555444 1122 34455666666
Q ss_pred HHhcCChHHHHHHHHHHhhccCC
Q 012539 268 CRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+...|++++|...++++.+..|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 66666666666666666666655
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=2.5e-05 Score=60.53 Aligned_cols=29 Identities=0% Similarity=0.033 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
..+|..+...|...|++++|.+.|++..+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555556666666666666666655
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=1.9e-05 Score=61.18 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCc----hHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL--KMT----VTLGTA 129 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 129 (461)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+..+.+... +++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444444444444444444444432 12333444444444444455555444444443321 011 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~ 151 (461)
+..+|.+.|++++|.+.|+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 5555555555555555555443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=1e-05 Score=63.04 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC---cchHHHHHHHHh
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKPHA----GAWGALLNACRMYKNTEMGELASRKLVELETKN---HGAYVLLSNIYA 303 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 303 (461)
+...+...|++++|...|+++ ...|+. ..+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334444555555555555544 111221 244445555556666666666666666666555 444556666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 012539 304 ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~ 320 (461)
..|++++|...+++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665544
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.6e-05 Score=64.19 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
++..+...|...|++++|+..+++..+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=2.2e-05 Score=60.74 Aligned_cols=92 Identities=12% Similarity=-0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444555555555555555554432 1134444444444555555555555555544443 2233344444444444
Q ss_pred cCCHHHHHHHHHhc
Q 012539 137 CGNMNKAMDFFWGM 150 (461)
Q Consensus 137 ~g~~~~A~~~~~~~ 150 (461)
.|++++|...|++.
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 44444444444443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=3.2e-05 Score=75.04 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.+++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457778888899999999999988887 3334 56688888899999999999999999999999999999999999999
Q ss_pred hcCChhHHHH-HHHHHHh
Q 012539 304 ESKNWDRVIN-VRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~-~~~~m~~ 320 (461)
+.++++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988774 5555543
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=1.3e-05 Score=64.53 Aligned_cols=62 Identities=5% Similarity=-0.070 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc-------cCCCcchH----HHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVEL-------ETKNHGAY----VLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
.|..+..++...|++++|+..+++++++ +|++..+| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7788888888888888888888888888 99888888 89999999999999999999888663
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=3.5e-05 Score=62.15 Aligned_cols=136 Identities=11% Similarity=0.036 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR-PN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 230 (461)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 35566666666677777777777666542100 11 123444444555555555555555544321100000
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC------CcchHHHHHHHHh
Q 012539 231 CLVDLYGRAGRLDEALDVINKMPMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK------NHGAYVLLSNIYA 303 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~ 303 (461)
.+ ....+..+...+...|++++|...+++..+..+. ...++..+..+|.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00 0224444555566666666666666666543211 1346677888888
Q ss_pred hcCChhHHHHHHHHHHh
Q 012539 304 ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~ 320 (461)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888877654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=9.6e-06 Score=79.10 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=52.9
Q ss_pred hcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
..|++++|...+++.++. .| +...+..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444321 22 2344444444444555555555444444 2222 2335555555555555666666
Q ss_pred HHHHHHhhccCCCcchHHHHHHH--HhhcCChhHHHHHHH
Q 012539 279 LASRKLVELETKNHGAYVLLSNI--YAESKNWDRVINVRQ 316 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 316 (461)
..++++.+..|.+..++..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666665565555555555554 555555666655554
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=7.4e-05 Score=57.96 Aligned_cols=94 Identities=13% Similarity=0.018 Sum_probs=52.5
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccC-h---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPW-L---EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNAC 268 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 268 (461)
..+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|...|++. ...|+ ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455555555555555432 121 1 34445555556666666666655554 11222 33455566667
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcch
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
...|++++|...++++.+..|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 77777777777777777777766543
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=1.9e-05 Score=64.50 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..|..+..++...|++++|...++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 467777778888888999999999988888888888888899999999999998888887654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=5e-06 Score=63.88 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.|..+...+...|++++|...++++.+..|+++.++..+..+|...|++++|...+++..+
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555666665555555543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=4e-05 Score=72.01 Aligned_cols=136 Identities=9% Similarity=-0.011 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVD 234 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 234 (461)
..|..+...+.+.|++++|++.|++..+. .|+.. ..... .... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 34666666777777777777777766542 01000 00000 0010 1222 3567888899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHH
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 312 (461)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++.++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5555 45688888889999999999999999999999999989999999888888777765
Q ss_pred H
Q 012539 313 N 313 (461)
Q Consensus 313 ~ 313 (461)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=2.5e-05 Score=62.82 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM--------PMKPHAG-AW----GALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
.|..+..++.+.|++++|+..+++. .+.|+.. .| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555555555555555444 3377654 78 888899999999999999999999999988755
Q ss_pred HHH
Q 012539 295 YVL 297 (461)
Q Consensus 295 ~~~ 297 (461)
+.-
T Consensus 139 ~~~ 141 (159)
T 2hr2_A 139 TPG 141 (159)
T ss_dssp CTT
T ss_pred HHH
Confidence 433
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=2.7e-05 Score=72.22 Aligned_cols=148 Identities=9% Similarity=-0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345677778888889999999999988763 454332 233444444433221 136777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH-hhcCChhHH
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY-AESKNWDRV 311 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 311 (461)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++.++.|.+..++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999988888876 3344 5568888888889999999999999999999888888888877773 455667778
Q ss_pred HHHHHHHHhCC
Q 012539 312 INVRQIMKAKG 322 (461)
Q Consensus 312 ~~~~~~m~~~g 322 (461)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=5.6e-05 Score=73.42 Aligned_cols=124 Identities=11% Similarity=-0.022 Sum_probs=97.3
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcC--Cc---cC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYG--IE---PW-LEHYGCLVDLYGRAGRLDEALDVINKM---------PMKPHAG-AWG 262 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~ 262 (461)
.+..+|++++|+.++++.++... +. |+ ..+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999998887765321 12 22 467888999999999999999888776 3345554 788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh-----ccCCCcc---hHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 263 ALLNACRMYKNTEMGELASRKLVE-----LETKNHG---AYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 263 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.|...|...|++++|+.+++++.+ ++|+.+. +...|..++...+++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875 3566543 45678888899999999999999998753
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.93 E-value=1.6e-05 Score=73.88 Aligned_cols=113 Identities=10% Similarity=-0.079 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 271 (461)
.+..+...+...|++++|...|...++. .|+.. .+...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4556666777888899999888887643 33322 1233444444444332 23788888889999
Q ss_pred CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 272 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|++++|...++++++++|.+..+|..+..+|...|++++|...+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988654
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=8.5e-05 Score=69.77 Aligned_cols=119 Identities=10% Similarity=-0.058 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCC----------------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPE----------------R---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 84 (461)
..|..+...+.+.|++++|+..|++..+ . +...|+.+..+|.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3466677777788888888877776543 1 23456666666666666666666666666532
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 012539 85 VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 144 (461)
+.+...+..+..++...|++++|...++++.+.. +.+..++..+..++.+.++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1244556666666666666666666666666553 334445555555555555555443
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=0.0001 Score=71.40 Aligned_cols=142 Identities=11% Similarity=-0.019 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
....|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+.- +....+|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~~~--------~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKASE--------SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHHHH--------HHHHHHHHHHHH
Confidence 3457888888888999999999999888763 2221000 0 00000000 011345556677
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 208 (461)
+|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|++..+. .|+ ...+..+..++...++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776552 35667777777777777777777777777663 343 4455566666666676666
Q ss_pred HH-HHHHHhh
Q 012539 209 GR-EHFDSMR 217 (461)
Q Consensus 209 a~-~~~~~~~ 217 (461)
+. ..+..|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 54 3445443
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.0011 Score=65.76 Aligned_cols=167 Identities=7% Similarity=-0.046 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--c
Q 012539 141 NKAMDFFWGMKE---RNVYTWTSVIGGLAMNGA----------GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG--L 205 (461)
Q Consensus 141 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~ 205 (461)
++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 344555554442 234455555444444444 566666666665542 223455555455555555 5
Q ss_pred HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 012539 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG-RLDEALDVINKM-PMKP-HAGAWGALLNACRMY----------- 271 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 271 (461)
++++.+.++.+.+. -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 56666666666542 1223455555555555666 666676666666 3333 444666655554442
Q ss_pred ---CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 272 ---KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 272 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999988887544
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00021 Score=58.07 Aligned_cols=110 Identities=14% Similarity=0.032 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 127 (461)
+..+......+.+.|++++|+..|.+....- -.|+...+ ..+ -+.+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence 4466777777778888888888777765520 00111000 000 02234456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
..+..+|.+.|++++|+..++... ..+..+|..+..+|...|++++|+..|++.... .|+
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 667777777777777777776654 235667777777777777777777777777663 454
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=2.1e-05 Score=60.34 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHhhhhcCC-cc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 012539 204 GLVEEGREHFDSMRREYGI-EP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 279 (461)
|++++|...|++.++. +. .| +...+..+...|...|++++|...|++. ...| +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555554421 10 12 2445555556666666666666666555 2223 34456666666777777777777
Q ss_pred HHHHHhhccCCCcc
Q 012539 280 ASRKLVELETKNHG 293 (461)
Q Consensus 280 ~~~~~~~~~p~~~~ 293 (461)
.++++.+..|.++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 77777777776653
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00019 Score=69.64 Aligned_cols=93 Identities=10% Similarity=-0.029 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----------CC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC--
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE----------RN-VYTWTSVIGGLAMNGAGEKSLELFSLMKQA---GVRPN-- 189 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-- 189 (461)
+++.|...|...|++++|+.++++... |+ ..+++.|...|...|++++|+.++++..+. -+-||
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444455555555555555554444321 11 235555666666666666666666655331 12222
Q ss_pred --HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 190 --EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 190 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
..+...+-.++...+..++|+.+|..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444555667777777777777654
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.73 E-value=0.00016 Score=53.56 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+...|..+...+...|++++|+..++++.+.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678888888999999999999999999999999999999999999999999999999987653
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=6.5e-05 Score=56.46 Aligned_cols=90 Identities=8% Similarity=-0.034 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYVL 297 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~ 297 (461)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.++.|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455666777777888888888877776 2233 55677778888888899999999999998888887 556666
Q ss_pred HHHHHhhcCChhHHHHHH
Q 012539 298 LSNIYAESKNWDRVINVR 315 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~ 315 (461)
+..++...|+++.|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666655554433
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=5e-05 Score=57.11 Aligned_cols=95 Identities=16% Similarity=0.010 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------hHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT------VTLG 127 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 127 (461)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+...++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3455666666666666666666666666542 2245556666666666666666666666666543 112 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
..+..++...|+.+.|...|+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 44555555555555554444443
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.67 E-value=0.00024 Score=51.01 Aligned_cols=80 Identities=28% Similarity=0.291 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666666777777777777777665 2223 45577777777888888888888888888888888878877777766
Q ss_pred hc
Q 012539 304 ES 305 (461)
Q Consensus 304 ~~ 305 (461)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00017 Score=54.84 Aligned_cols=77 Identities=8% Similarity=-0.041 Sum_probs=59.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 245 ALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 245 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|...|++. ...| +...|..+...+...|++++|...++++.+.+|.+..+|..+..+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445444 3344 45577777778888888888888888888888888888888888898999999999888877653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0033 Score=49.46 Aligned_cols=109 Identities=7% Similarity=-0.067 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAM 144 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 144 (461)
++++|++.|++..+.| .|+.. +...+...+..+.|...+.+..+.| ++..+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4444445555566666666666554 33444555555655 55666666
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 012539 145 DFFWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 145 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 185 (461)
+.|++..+ .++.++..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66655442 345555555555555 555556666555555543
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.0014 Score=46.78 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+.+..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555566666666555555432 1234445555555555555555555555555543 23334444444444
Q ss_pred H
Q 012539 135 S 135 (461)
Q Consensus 135 ~ 135 (461)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.44 E-value=0.0014 Score=51.67 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=43.5
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh----c
Q 012539 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVLLSNIYAE----S 305 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 305 (461)
.+|...+.+++|.++|++.....++..+..|-..|.. .++.++|...+++..+. .++.++..|..+|.. .
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 3333333344444444433212233344444444443 45555555555555544 234455666666666 5
Q ss_pred CChhHHHHHHHHHHhCCC
Q 012539 306 KNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 306 g~~~~a~~~~~~m~~~g~ 323 (461)
+++++|.+.+++..+.|.
T Consensus 111 ~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 666666666666665554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.0001 Score=59.12 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC-----------ChhHHHHHHHHHHhCC
Q 012539 274 TEMGELASRKLVELETKNHGAYVLLSNIYAESK-----------NWDRVINVRQIMKAKG 322 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~g 322 (461)
+++|+..|+++++++|++..+|..+.++|...| ++++|++.|++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999875 8999999999987753
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.39 E-value=0.0012 Score=47.91 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 256 PHAGAWGALLNACRMYKN---TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
+++..+..+..++...++ .++|..+++++.+.+|+++.+...+...+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777654444 799999999999999999999999999999999999999999999886543
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.0003 Score=67.17 Aligned_cols=116 Identities=7% Similarity=0.083 Sum_probs=86.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhc-----cCCC---cch
Q 012539 233 VDLYGRAGRLDEALDVINKM---------PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVEL-----ETKN---HGA 294 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~ 294 (461)
+.-+.+.|++++|+.++++. +..|+. .+++.+...|...|++++|+.+++++++. .|.. ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778889988888765 112322 37888888899999999999999988753 3443 347
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 012539 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366 (461)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 366 (461)
++.|..+|...|++++|..++++..+---. .-...||...+.+.++.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999987652110 112479999999988888887775
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.33 E-value=0.015 Score=57.73 Aligned_cols=165 Identities=13% Similarity=-0.041 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 70 SREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGA----------LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 70 ~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
.++|++.++++... .| +...|+.--.++...++ ++++...++.+++.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34566666666663 23 33345544444444444 566666666666554 344555555555555566
Q ss_pred --CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---------
Q 012539 139 --NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNG-AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV--------- 203 (461)
Q Consensus 139 --~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------- 203 (461)
+++++++.++.+.+ ++..+|+.....+.+.| .++++++.++++.+.. +-|...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 45666666666553 35566666666666666 5666666666665532 22344554444433331
Q ss_pred -----CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCC
Q 012539 204 -----GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 204 -----g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 241 (461)
+.++++.+.+..++.. .| +...|..+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCC
Confidence 4456666666655532 33 45556555555555554
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.29 E-value=0.0011 Score=50.17 Aligned_cols=75 Identities=9% Similarity=0.020 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+...+..+++.. +.+...+..+...|...|++++|...|++... .+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444433 33444555555555555555555555554431 2344555555555555555555555555443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.0017 Score=47.83 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
..++..+...|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|++.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555554431 233444555555555555555555555443
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.26 E-value=0.00059 Score=54.68 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 141 NKAMDFFWGMKE---RNVYTWTSVIGGLAMN-----------GAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 141 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
++|+..|++..+ .+..+|..+..+|... |++++|++.|++..+ +.|+...|...+.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 344444444431 2334455555555444 467778888887777 4666655544443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.049 Score=56.46 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=20.8
Q ss_pred HHcCCHHHHHH-HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 34 AKCGDVDLARK-MFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 34 ~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
...+++++|.+ ++..++.+ .....++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecC
Confidence 34566666666 44333301 11245555555566666655443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.001 Score=63.51 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhc-----cCCC---cchHHHHH
Q 012539 238 RAGRLDEALDVINKM---------PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVEL-----ETKN---HGAYVLLS 299 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~ 299 (461)
..|++++|+.++++. +..|+.. +++.|..+|...|++++|+.++++++++ +|+. ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778887777654 2234443 7888899999999999999999998753 3443 34788999
Q ss_pred HHHhhcCChhHHHHHHHHHHh
Q 012539 300 NIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.96 E-value=0.08 Score=40.43 Aligned_cols=141 Identities=8% Similarity=0.034 Sum_probs=104.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
+...|..++..++..+.... .+..-|+.+|--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34567788888888887653 35556666665555556666666666665432222 34666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
....+-.++ .+.......+..+...|+.+.-.+++..+...++.++.....+.++|.+.|+..+|.+++.+..+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 355666777888899999999999999987777888889999999999999999999999999999985
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.92 E-value=0.034 Score=51.07 Aligned_cols=138 Identities=13% Similarity=-0.007 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHH--hCCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhh---cC-----cHHHHHHHHHHhh
Q 012539 152 ERNVYTWTSVIGGLA--MNGA---GEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCV---VG-----LVEEGREHFDSMR 217 (461)
Q Consensus 152 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~---~g-----~~~~a~~~~~~~~ 217 (461)
..+..+|...+.+.. ..+. ..+|+.+|++..+ ..|+ ...+..+.-++.. .+ ........+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 346677777766543 3333 4788999999888 4666 3444444333321 00 0111111111111
Q ss_pred hhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.....+.++.+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00011334555555555555556666666666555 233554455444445566666666666666666666654
No 215
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.078 Score=43.01 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=72.1
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 110 (461)
....++|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 4677899999999999999999999987643 3344445556777776665
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555555544 22333444556677777777766544
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0068 Score=57.75 Aligned_cols=92 Identities=15% Similarity=0.023 Sum_probs=69.9
Q ss_pred hcCcHHHHHHHHHHhhhhcC--CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYG--IEPW----LEHYGCLVDLYGRAGRLDEALDVINKM---------PMKPHAG-AWGALL 265 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll 265 (461)
..|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788899888887765321 2222 467888999999999999999888776 3346555 788899
Q ss_pred HHHHhcCChHHHHHHHHHHhh-----ccCCCcc
Q 012539 266 NACRMYKNTEMGELASRKLVE-----LETKNHG 293 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~ 293 (461)
..|...|++++|+.+++++.+ ++|+.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999875 3566553
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.011 Score=56.26 Aligned_cols=98 Identities=12% Similarity=-0.032 Sum_probs=72.1
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcC--CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-H
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYG--IEPW----LEHYGCLVDLYGRAGRLDEALDVINKM---------PMKPHAG-A 260 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~ 260 (461)
+..+...|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4455677888888888887764321 2222 457888888899999999998888766 3345544 7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh-----ccCCCcch
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVE-----LETKNHGA 294 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 294 (461)
++.|...|...|++++|+.+++++.+ .+|+.+.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 88888889999999999999999875 45666543
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.80 E-value=0.052 Score=56.32 Aligned_cols=116 Identities=11% Similarity=-0.052 Sum_probs=71.3
Q ss_pred cCCchHHHH-HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 5 LGCLGYCQK-VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 5 ~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
.|++++|.+ ++..+. +......++..+.+.|.++.|.++.+. .. .-.....+.|++++|+++.+.+
T Consensus 612 ~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~~~~--- 678 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLLTDE--- 678 (814)
T ss_dssp TTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHHTTC---
T ss_pred hCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHHHhh---
Confidence 466777776 554332 122337777778888888888876532 11 1123346678888887775432
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
.+...|..+...+.+.++++.|++.|..+.. +..+...|...|+.+...+
T Consensus 679 ---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 679 ---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3567788888888888888888888776532 2234444555555554443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.63 E-value=0.0053 Score=44.63 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcc-hHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHG-AYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+...|++++|...++++.+..|.++. ++..+..+|...|++++|.+.+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444 44444444444444444444444443
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.0095 Score=43.23 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKP-HAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
....+.+.|++++|...+++. ...| +.. .|..+..++...|++++|...++++.+.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344566677777777777665 2233 345 666677777778888888888888888888776555
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.55 E-value=0.041 Score=50.54 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 229 (461)
.+..+|.++...+...|++++|+..+++....+ |+...|..+...+.-.|+.++|.+.+.... .+.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 355666666655555677777777777776643 565555555556666777777777776654 335554444
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.54 E-value=0.023 Score=44.90 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcc-C-CCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 256 PHAGAWGALLNACRMYK---NTEMGELASRKLVELE-T-KNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++..+...+..++.+.+ +.++++.+++.+.+.+ | .+...+..|..+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555666655 4556777777776666 4 2345666677777777777777777777655
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.11 Score=42.23 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=83.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
+...++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456788888888887766 4677888888888888888888888887643 2334445556677766555
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
+-+....+ | -++.....+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 54443322 1 244555667778888888888887753232211 123466666777666655
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.86 E-value=1.6e-06 Score=81.05 Aligned_cols=263 Identities=11% Similarity=0.098 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 101 (461)
.+.+|+.|..++.+.+.+.+|++-| +...|+..|..+|.+..+.|.+++-+..+.-.++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4568888999998888888887765 4566778888899999999999988887765544322 33444577888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence 888765444321 35555556678888888888888877776653 34445556666777666654332
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHH
Q 012539 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PM-KPHAG 259 (461)
Q Consensus 182 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~ 259 (461)
.-+..||-.+-.+|...+.+..|...--.++ ..+.....++..|-+.|.+++-+.+++.. +. +....
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 2245677777778888777665544322222 12223345677788888888888777765 33 34566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh-hcc-CC------CcchHHHHHHHHhhcCChhHHHH
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLV-ELE-TK------NHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
.|+-|.-.|.+.. ++...+.++..- +++ |+ ....|.-++..|.+-..|+.|..
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777777777663 444333333322 233 22 23466677777777777776543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.85 E-value=0.045 Score=40.31 Aligned_cols=70 Identities=14% Similarity=0.005 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHH
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-----P----MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 298 (461)
+-.|...+.+.|+++.|...|+.. + ..+...++..|..++.+.|+++.|...++++.++.|.+..+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 334455555555555555555443 0 113345777888888899999999999999999999886554433
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.54 E-value=0.066 Score=38.54 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=40.3
Q ss_pred cChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 224 PWLEHYGCLVDLYGRAGR---LDEALDVINKM-PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 224 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+++..+..+..++...++ .++|..++++. ...|+. ..+..+...+...|++++|+..|+++.+.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345555556665543333 46666666665 334433 34555555577777777777777777777776
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.28 E-value=0.079 Score=46.74 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHhhccCCC-cchHHHHHHHHhhc-CChhH
Q 012539 242 LDEALDVINKM-PMKPH---AGAWGALLNACRM-----YKNTEMGELASRKLVELETKN-HGAYVLLSNIYAES-KNWDR 310 (461)
Q Consensus 242 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 310 (461)
...|...+++. .+.|+ ...|..|...|.. .|+.+.|.+.|+++++++|+. ..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 44565 4467777777777 489999999999999999974 88999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 012539 311 VINVRQIMKAKGVKKLPG 328 (461)
Q Consensus 311 a~~~~~~m~~~g~~~~~~ 328 (461)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988866553343
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.96 E-value=0.3 Score=38.54 Aligned_cols=26 Identities=19% Similarity=-0.066 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+..|.-+|.+.|++++|.+.++.+.+
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455556666666666666555
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.43 E-value=4.4 Score=40.26 Aligned_cols=54 Identities=9% Similarity=0.006 Sum_probs=27.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC-CHHH-HHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 233 VDLYGRAGRLDEALDVINKMPMKP-HAGA-WGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~p-~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+..-.+.|+++.|...|+.|+..+ +..- ..=+..++...|+.++|..+|+.+.+
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333345566666666666664322 1111 11222344556666666666666653
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.41 E-value=0.33 Score=36.81 Aligned_cols=95 Identities=17% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CHH-HHHHHHHHH
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE---ALDVINKM-PMK-P-HAG-AWGALLNAC 268 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~~~-~~~~ll~~~ 268 (461)
++..-.....+..+.+-|...... | .|+..+--.+..++.+..+..+ +..+++++ ... | ... ....|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 333334445555666666555432 3 2555666666666666665544 66666665 211 2 111 333344446
Q ss_pred HhcCChHHHHHHHHHHhhccCCCc
Q 012539 269 RMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+.|+++.|.+.++.+++.+|.+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCH
Confidence 667777777777777777777664
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.06 E-value=0.48 Score=34.57 Aligned_cols=62 Identities=6% Similarity=-0.202 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 118 (461)
+..|...+.+.|++..|...|++..+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445555555555555555555544310 0122334444444455555555555555554443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.68 E-value=0.48 Score=41.76 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=80.2
Q ss_pred HHcCCHHHHHHHHhhCCCCChh--HHHHHHH-HHHHc--CC------hHHHHHHHHHHHHCCCCcC---HHHHHHHHHHH
Q 012539 34 AKCGDVDLARKMFDEMPERDPI--AWNAMLA-GYAQC--GK------SREALHLFHLMQIHDVKLN---EVSMVSVLSAC 99 (461)
Q Consensus 34 ~~~g~~~~A~~~~~~m~~~~~~--~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~ 99 (461)
.+.++..+-...+.++...++. .|..++. .++.. |. ..+|..++++..+ +.|+ ...|..+...|
T Consensus 132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHH
Confidence 4677776777777777655543 5665554 33332 33 3567777777777 3455 45777777778
Q ss_pred hcc-----CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHhcCC
Q 012539 100 THL-----GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC-GNMNKAMDFFWGMKE 152 (461)
Q Consensus 100 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 152 (461)
... |+.++|++.|++.++.+..-+..++....+.++.. |+.++|.+.+++...
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 774 88888888888888876433466666778888774 888888888887764
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.82 Score=46.38 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=49.2
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
|...|+++.|..+.+++...-|.+-.+|..|+.+|...|+|+.|+-.+..+-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 7788999999999999999999999999999999999999999999998873
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.96 E-value=2.4 Score=32.48 Aligned_cols=139 Identities=10% Similarity=-0.004 Sum_probs=79.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
-.|..++..++..+.... .+..-||-++--....-+-+-..++++.+-+. .|. ..||++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 345566666666555542 13333443333333333444333333332221 111 23455554444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCc
Q 012539 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (461)
.+-.+. .+.......++.+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++-++ |++
T Consensus 83 C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 83 CGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 444332 2334456667778888888888888888533 25677777888888888888888888888887664 654
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.86 E-value=1.1 Score=33.95 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=58.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH---HHHHHHHhhhhcCCcc--ChhHHHHHHHHHHhcC
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE---GREHFDSMRREYGIEP--WLEHYGCLVDLYGRAG 240 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g 240 (461)
........+.+.|.+....|. |+..+-..+.-++.++.+... +..++..+.+. + .| .....-.|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhh
Confidence 333445566666666655554 666666666777777765554 88888888753 2 23 2334445667888999
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 012539 241 RLDEALDVINKM-PMKPHA 258 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p~~ 258 (461)
++++|.+.++.+ ..+|+.
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 999999988887 445543
No 236
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.83 E-value=5.2 Score=43.20 Aligned_cols=163 Identities=9% Similarity=0.072 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
.++..+.+.+..+.|.++..-.+. ++.+-..+..+|...|++++|.+.|++.-. |+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhcc
Confidence 456667778888888877665554 455556778889999999999999987632 222211100 00000
Q ss_pred HHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCH----HHHHHHHHHHHhCCChHHHHHH
Q 012539 108 GRWAHVYIERNR--LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK----ERNV----YTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 108 a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~ 177 (461)
...+.... ...-...|..++..+-+.|.++.+.++-+... ..+. ..|..+..++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 01111111 11223456667777777787777766554322 2221 2588889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 178 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
+-.+.....+ ...+..|+...+..|..+.
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9888764333 4566667776666665443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.72 E-value=0.68 Score=36.20 Aligned_cols=53 Identities=8% Similarity=-0.086 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 272 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
+|+++|..+|+.++.....-+..|...+.--.+.|+.+.|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67777777777776653333445666666667888888888888887775543
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.63 E-value=3.8 Score=32.01 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCcC
Q 012539 52 RDPIAWNAMLAGYAQCGKS------REALHLFHLMQIHDVKLN 88 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~ 88 (461)
.|..+|-..+...-+.|++ ++.+++|++.... ++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 3566666666666666666 6666666666553 4443
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.41 E-value=8.3 Score=35.78 Aligned_cols=128 Identities=11% Similarity=-0.001 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCC---chHHHHHHHHHHHhc-CCHHHHHHHHHhcCC---CCHHHH---
Q 012539 90 VSMVSVLSACTHLGALDQGRWAHVYIERNR-LKM---TVTLGTALVDMYSKC-GNMNKAMDFFWGMKE---RNVYTW--- 158 (461)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~--- 158 (461)
.....+...|.+.|+.++..+++......- .-+ .......|++.+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665555443210 001 122334555555553 222323333332221 011112
Q ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 159 ---TSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-----EVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 159 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
.-++..|...|++.+|.+++.++.+.=-+.| ...+..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1345566666666666666666654211111 1123333445555666666666665553
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.54 E-value=1.7 Score=34.64 Aligned_cols=112 Identities=9% Similarity=0.007 Sum_probs=54.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCH-------HHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHH-HHHH
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMK-----ERNV-------YTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEV-TFVS 195 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-~~~~ 195 (461)
-+......|.++.|+-+.+-+. .+++ .++..+..++...|++..|...|++..+.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3556666777777766655433 2331 244555666777777777777777753311 111111 1111
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (461)
+- ....... .....++.+.---+..+|.+.|+.++|+.+++.+|.+
T Consensus 106 ~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 10 0000000 0012223344444667777888888888888877544
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.28 E-value=1.6 Score=44.30 Aligned_cols=121 Identities=11% Similarity=-0.016 Sum_probs=72.8
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHCCCCcCHHH-H-HHHHHHHhccCC-HHHHHHHHHHHHHc------CCCC-c----
Q 012539 59 AMLAGYAQCGK-SREALHLFHLMQIHDVKLNEVS-M-VSVLSACTHLGA-LDQGRWAHVYIERN------RLKM-T---- 123 (461)
Q Consensus 59 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t-~-~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~---- 123 (461)
.|+..+...|+ .+.|+.+|+++.... |...+ + ..++..+...++ --+|.+++.+.++. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444445556 577999999988753 33222 2 223333333332 22334444333321 1111 1
Q ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 124 ------VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 124 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
......-++.+...|+++.|+++-++... .+-.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222334556678999999999887762 46789999999999999999999888876
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.93 E-value=0.0025 Score=60.04 Aligned_cols=148 Identities=13% Similarity=0.118 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
+.+|..|..++.+.|++.+|++.|-+ ..|+..|..+|.+..+.|.+++-+..+...++..-.|.. =+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHhh
Confidence 34566667777777766666655432 335555666777777777777777766665554333322 23566677776
Q ss_pred CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------------------CCCCHHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP-----------------------MKPHAGA 260 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------------~~p~~~~ 260 (461)
+++.+-.++ =-.|+..-...+.+-+...|.++.|.-+|..++ ...++.|
T Consensus 130 ~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 130 NRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp CSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred CcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 664432221 123444445555666666666666655555441 1246668
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 012539 261 WGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
|..+-.+|...+.+..|..+--.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLn 224 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLH 224 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcch
Confidence 88888888888876666544333
No 243
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.65 E-value=4.2 Score=29.11 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.-++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-+|-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 46777777777776653 222222223445678999999999999999999999887654 56777777777767766
Q ss_pred cCCCCCHHHHH
Q 012539 184 AGVRPNEVTFV 194 (461)
Q Consensus 184 ~g~~p~~~~~~ 194 (461)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44445543
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.40 E-value=22 Score=36.96 Aligned_cols=215 Identities=10% Similarity=-0.004 Sum_probs=114.8
Q ss_pred HHHcCCHHHHHHHHhhCCC----CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------CcCHHHHHHHHHHH
Q 012539 33 CAKCGDVDLARKMFDEMPE----RDPI--AWNAMLAGYAQCGKSREALHLFHLMQIHDV-------KLNEVSMVSVLSAC 99 (461)
Q Consensus 33 ~~~~g~~~~A~~~~~~m~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~t~~~ll~~~ 99 (461)
....|+.++++.+++.... .+.. .-..+.-+.+..|..+++++++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4467788888888887553 2222 233344456666776778887776654211 01111112222222
Q ss_pred hccCC-HHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--HHHHHHHHHHHHhCCChHH
Q 012539 100 THLGA-LDQGRWAHVYIERNRLKMTV--TLGTALVDMYSKCGNMNKAMDFFWGMKE-RN--VYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 100 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~ 173 (461)
+-.|. -+++...+..++... .+.. ...-+|...|.-.|+-+....++..+.+ .+ +.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22332 234455555555432 1111 1223455556677887777777665442 22 2223333444557889888
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 174 SLELFSLMKQAGVRPNEVTFV---SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
+..+.+.+... ..| ..-|. ++.-+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888763 122 22333 3344677888988888788887652 22333333333334444666666666666
Q ss_pred hC
Q 012539 251 KM 252 (461)
Q Consensus 251 ~~ 252 (461)
.+
T Consensus 619 ~L 620 (963)
T 4ady_A 619 LL 620 (963)
T ss_dssp TG
T ss_pred HH
Confidence 44
No 245
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.36 E-value=8.2 Score=31.88 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 68 (461)
.+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 4444444444444444444333333333333444444444444444444
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.28 E-value=3.9 Score=29.21 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.-++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46777777777777653 22222222344667899999999999999999999988755 467888888887777776
Q ss_pred cCCCCCHHHHH
Q 012539 184 AGVRPNEVTFV 194 (461)
Q Consensus 184 ~g~~p~~~~~~ 194 (461)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45555554
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.08 E-value=3.3 Score=38.51 Aligned_cols=70 Identities=9% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh----hcCCccChhH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR----EYGIEPWLEH 228 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 228 (461)
...++..+...|++++|+..++.+... -+-+...+..++.++.+.|+..+|.+.|+...+ +.|+.|++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566677788888888777777664 244677777888888888888888877776543 3466666544
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.03 E-value=1.2 Score=41.51 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh-----CCCccCCc
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA-----KGVKKLPG 328 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 328 (461)
...++..+...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344566677889999999999999999999988999999999999999999999888754 48877654
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.91 E-value=16 Score=34.62 Aligned_cols=183 Identities=7% Similarity=0.072 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHH-----CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchHHHHHHHH----HHHhc
Q 012539 68 GKSREALHLFHLMQI-----HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVD----MYSKC 137 (461)
Q Consensus 68 g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~----~~~~~ 137 (461)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+. |..+. ....+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 678999988766654 234456677888999999999999988877666543 32222 2223333 22223
Q ss_pred CCHH--HHHHHHHhcCC----C---C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 012539 138 GNMN--KAMDFFWGMKE----R---N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPN---EVTFVSVLRGC 200 (461)
Q Consensus 138 g~~~--~A~~~~~~~~~----~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~ 200 (461)
...+ .-..+.+.... + . ......|...|...|++.+|.+++..+... |..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22333333321 1 1 123456778899999999999999998643 32222 23566677888
Q ss_pred hhcCcHHHHHHHHHHhhhhc-CCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 201 CVVGLVEEGREHFDSMRREY-GIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
...+++..|..++.++.... ...+. ...+..++..+...+++.+|.+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999999998874321 22222 345677788888899999988877665
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.69 E-value=7 Score=30.19 Aligned_cols=46 Identities=4% Similarity=-0.033 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhccCCC-cchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 275 EMGELASRKLVELETKN-HGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+++.+++.+.+..|.+ ......|+-++.+.|++++|.++.+.+.+
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555555544432 22344455566666666666666665544
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.50 E-value=17 Score=34.40 Aligned_cols=185 Identities=9% Similarity=0.042 Sum_probs=116.9
Q ss_pred CCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH----hcc
Q 012539 37 GDVDLARKMFDEMPE-----R----DPIAWNAMLAGYAQCGKSREALHLFHLMQI-HDVKLNEVSMVSVLSAC----THL 102 (461)
Q Consensus 37 g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~----~~~ 102 (461)
|+++.|++.+-.+.+ . .......++..|...|+++...+.+..+.. .|..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 678888877654431 1 344677899999999999999888776654 3333222 22333332 233
Q ss_pred CCHHHHHHHHHHHHH------cC-CCC---chHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-----CHHHHHHHHH
Q 012539 103 GALDQGRWAHVYIER------NR-LKM---TVTLGTALVDMYSKCGNMNKAMDFFWGMKE----R-----NVYTWTSVIG 163 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~------~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~ 163 (461)
...+.... ..... .| +-. .......|...|...|++.+|..++.++.. . -+..+..-+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 11111 11 001 123446789999999999999999998762 1 1356777788
Q ss_pred HHHhCCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 164 GLAMNGAGEKSLELFSLMKQ----AGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
.|...+++..|..++++... ....|+ ...+...+..+...+++.+|-..|.++...+....+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence 99999999999999998743 222232 234556667777889999998888877654333333
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.15 E-value=6.4 Score=31.32 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCcCH-HHHH
Q 012539 28 AMISACAKCGDVDLARKMFDEMP-----ERDP-------IAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNE-VSMV 93 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-~t~~ 93 (461)
.-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++.+|...|++.++.. .-|.. .+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34556667888888877766543 1221 255667778888888888888888764321 11111 1111
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHH
Q 012539 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTWTSVI 162 (461)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li 162 (461)
.+. ....... ......+..+---+..+|.+.|++++|+.+++.++ .+++..--+|.
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence 110 0000000 01123344555558888899999999999999886 35555444333
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.08 E-value=3.1 Score=29.87 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
++.-+-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3333334456789999999999999999999999999988865444344566655
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.05 E-value=15 Score=33.14 Aligned_cols=168 Identities=9% Similarity=0.010 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCcCHHHHHHHHHHHh
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF----HLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
.|.++..=|.+.+++++|++++-. -...+.+.|+...|-++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666677788888888887543 233455666665554443 44556678888888877777776
Q ss_pred ccCCHH-----HHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Q 012539 101 HLGALD-----QGRWAHVYIERNR--LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 101 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 173 (461)
....-+ -..+...+-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655321 1222333333433 334677888899999999999999988853222334666555555444433221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+|...-.+++ -|.-.+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556788888777666554
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.91 E-value=28 Score=36.25 Aligned_cols=253 Identities=12% Similarity=0.048 Sum_probs=136.1
Q ss_pred ccCCchHHHHHHhcCCC----CCH--HHHHHHHHHHHHcCCHHHHHHHHhhCC-CCC--------h--hHHHHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE----PDV--VCQTAMISACAKCGDVDLARKMFDEMP-ERD--------P--IAWNAMLAGYAQ 66 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~--------~--~~~~~li~~~~~ 66 (461)
..|+.++++.+++.-+. .+. ..-..+.-+.+.+|.-+++..++.... ..+ . ..--+|.-+.+-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 46788889998887553 233 333344445666776667777665533 222 1 122233334443
Q ss_pred cCC-hHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 012539 67 CGK-SREALHLFHLMQIHDVKLNE--VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143 (461)
Q Consensus 67 ~g~-~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (461)
.|. -+++.+.+..+....- +.. ..-..+...+.-.|+-+....++..+.+.. ..+..-..++.-++.-.|+.+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGG
T ss_pred cCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHH
Confidence 443 2466777777765321 111 111223334556678888888887776532 22222222333334467888888
Q ss_pred HHHHHhcCC-CCHH-HHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 144 MDFFWGMKE-RNVY-TWT---SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 144 ~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
..+.+.+.. .+.. -|. ++.-+|+-.|+.....+++..+.... ..+......+.-+....|+.+.+.+++..+..
T Consensus 544 ~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 544 DDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 777777653 3432 333 33456777888877777998887641 22222222222234445666666777765543
Q ss_pred hcCCccChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHH
Q 012539 219 EYGIEPWLEHYGCLVDLYGRAGRL-DEALDVINKMPMKPHAGAW 261 (461)
Q Consensus 219 ~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 261 (461)
...|.+..-..+.-+....|.. .+|.+++..+...+|..+-
T Consensus 623 --~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 623 --SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp --CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred --cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 2345555444555555555543 5677777777434555433
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.83 E-value=3.4 Score=29.71 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446677777777777889999999999999999999999999998865433 33456766654
No 257
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.57 E-value=12 Score=30.54 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 012539 14 VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 93 (461)
+++....+|..+....+..+.+.|..+....+.+.+..+|...-...+.+....|..+ +...+.++.. .++...-.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~ 94 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 94 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 3344445666666666666666665444444444454555555555555555555432 2233333322 23444444
Q ss_pred HHHHHHhccCC
Q 012539 94 SVLSACTHLGA 104 (461)
Q Consensus 94 ~ll~~~~~~~~ 104 (461)
..+.++...++
T Consensus 95 ~a~~aL~~~~~ 105 (201)
T 3ltj_A 95 SAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCc
Confidence 44444444444
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.24 E-value=18 Score=32.27 Aligned_cols=169 Identities=8% Similarity=0.058 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL----FHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
.|.++..=|.+++++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455555666666667766666442 23345566776555553 455556788888888888877765
Q ss_pred ccCC-----HHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC---CC
Q 012539 101 HLGA-----LDQGRWAHVYIERNRL--KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN---GA 170 (461)
Q Consensus 101 ~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 170 (461)
.... .+-..+...+-.+.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 5332 2233334444444432 247788888999999999999999888633333556666555544443 43
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
..++-- ..-.+++ -|.-.+++..|..+++...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1112222 244567888888888766543
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.19 E-value=19 Score=32.45 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF----SLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
+|.++..-|.+.+++++|++++.. -...+.+.|+...|.++- +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677778999999999887543 223455667765555544 55566788888888777777776
Q ss_pred hcCc--HHHHHHHHHHhhh---hcCCc--cChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012539 202 VVGL--VEEGREHFDSMRR---EYGIE--PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 202 ~~g~--~~~a~~~~~~~~~---~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
.... .+. ..+.+.+++ +.|-. -++.....+...|.+.+++.+|..-|- .+..+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 5432 111 222222221 12322 367788889999999999999998874 3433444566555544433332
Q ss_pred HHHHHHHHHHhhccCCCcchHH-HHHHHHhhcCChhHHHHHHHHHHh
Q 012539 275 EMGELASRKLVELETKNHGAYV-LLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
|.....|. -.+--|.-.++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 234456677888899888777654
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.13 E-value=4.3 Score=29.02 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=42.0
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 92 (461)
..+.+.|++++|..+.+.+.-||.++|-+|... +.|..+++..-+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456688888888888888888888888877654 5677777776666666655 4444444
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.59 E-value=4 Score=29.14 Aligned_cols=60 Identities=13% Similarity=0.000 Sum_probs=43.5
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 93 (461)
..+.+.|++++|..+.+.+.-||.++|-+|... +.|..+++..-+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456688888888888888888888888877654 6777777777776776665 44444443
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.09 E-value=8.2 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=15.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 263 ALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 263 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
-|.-++.+.|+++.|.+..+.+.+.+|.|.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 333345555555555555555555555543
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.27 E-value=21 Score=38.47 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--------------------------CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKER--------------------------NVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
-.+..+|..+|++++|...|.+.... -..-|..++..+-+.+.++.++++-+..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566677777777777777654310 0112455556666666666666666555
Q ss_pred HHcCCCCCH----HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 182 KQAGVRPNE----VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 182 ~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
.+....-+. ..|..+..++...|++++|...+-.+... .--......||..++..|.+
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCCh
Confidence 443211111 13555666666666666666666544221 11233444455555544443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.83 E-value=23 Score=31.53 Aligned_cols=168 Identities=10% Similarity=0.028 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL----FSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
.|.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5566777888889999998875432 2345667776665554 455556778888887777777665
Q ss_pred hcCcHH-HHHHHHHHhhh---hcCC--ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 012539 202 VVGLVE-EGREHFDSMRR---EYGI--EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY---K 272 (461)
Q Consensus 202 ~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~---~ 272 (461)
....-+ .=.++.+.+++ +.|- .-++.....+...|.+.|++.+|..-|- .+..-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 522111 11222222221 1122 2367888889999999999999998765 22111344555554443333 3
Q ss_pred ChHHHHHHHHHHhhccCCCcchHH-HHHHHHhhcCChhHHHHHHHHHHh
Q 012539 273 NTEMGELASRKLVELETKNHGAYV-LLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
...++- .|. -.+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~d---------------lf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVA---------------EFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHH---------------HHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333322 221 223345677888899988887654
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.99 E-value=20 Score=29.42 Aligned_cols=167 Identities=9% Similarity=0.032 Sum_probs=91.4
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012539 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117 (461)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (461)
+.+....+.+.+..+|...-...+..+.+.|.. .+...+.++.. .+|...-...+.++...+..+.. ..+..+.+
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~ 91 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK 91 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc
Confidence 334444455555666777666777777777764 34444444443 34666666666666666654332 22222222
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 118 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
.++..+-...+....+.|+.+....+.+.+..++...-...+.++.+.|.. ++...+..+.. .++...-...+
T Consensus 92 ---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 92 ---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp ---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 455666666677777777655444445555566666666666666666654 34444444432 34555555556
Q ss_pred HHHhhcCcHHHHHHHHHHhh
Q 012539 198 RGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~ 217 (461)
.++.+.+. .++...+..+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHH
Confidence 66666554 33444444443
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.13 E-value=36 Score=31.89 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC------CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE------RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
...+.+.|.+.|++++|.+.|.++.. .-+..+-..|..+...+++..+...+++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34466666666666666666665542 123445555666666666666666666553
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.13 E-value=8.6 Score=29.30 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+. .+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33566677777777789999999999999999999999999999886543 344556776664
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.50 E-value=9.1 Score=29.15 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 244 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
+++.-+-.+..-|++.+..+.+.+|++.+|+..|.++++-++..-.+....|..++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34444444566799999999999999999999999999998865433344676665
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.92 E-value=30 Score=30.00 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=60.6
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccCh----hHHHHHHHHHHhc
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL----EHYGCLVDLYGRA 239 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~ 239 (461)
...+.|+.++|++....-.+.. +-|...-..++..+|-.|+++.|.+-++...+ +.|+. ..|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHH---
Confidence 3455677777777776666642 33555555666777777777777777666543 23432 2333333221
Q ss_pred CCHHHHH-HHHHhC--C--CCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhccCCCc
Q 012539 240 GRLDEAL-DVINKM--P--MKPHAGAWGALLNA--CRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 240 g~~~~A~-~~~~~~--~--~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
... ++|..- | ......-...++.+ ....|+.+.|..+-..+.+.-|..+
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111 122111 1 01112222334444 3445777777777777776665544
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=75.41 E-value=36 Score=33.95 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=48.5
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC----------------hHHHHHHHHHHhh-------ccC
Q 012539 235 LYGRAGRLDEALDVINKMPMKPHAG--AWGALLNACRMYKN----------------TEMGELASRKLVE-------LET 289 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~~~----------------~~~a~~~~~~~~~-------~~p 289 (461)
-+...|++++|..+|.-.+ ..|.+ +.|.+++-.....+ ...|..+.+.... ..+
T Consensus 452 ~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 4557788888888888776 33332 55555555332211 2233444333221 122
Q ss_pred CCcchHHHHHHH---H--hhcCChhHHHHHHHHHHhCCCcc
Q 012539 290 KNHGAYVLLSNI---Y--AESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 290 ~~~~~~~~l~~~---~--~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
.+..++..|+.. + .+.|+|++|.+.+++ .++-|
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~---L~llP 568 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMEL---LDLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---TSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCC
Confidence 233455554443 3 689999999988775 44554
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.46 E-value=23 Score=26.73 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKERN---VYTWTSVIGGLAMNGA--GEKSLELFSLMKQAGVRPNEV 191 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 191 (461)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4568888999999999999999998663 2445555566665542 466778888887777555433
No 272
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=69.79 E-value=59 Score=28.95 Aligned_cols=56 Identities=7% Similarity=0.070 Sum_probs=41.6
Q ss_pred CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 253 PMKPHAG--AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 253 ~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+++|... +...-+..+.+++++..|..+.++++++.|+.. ..++|.+++..-.+.+
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 5555333 667777779999999999999999999998632 3356777777765543
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.48 E-value=10 Score=32.87 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=34.4
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
...+.|++++|+.....- ..+| |...=..|+..++-.|+++.|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345666777766655443 3344 33344555566677777777777777777777653
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.15 E-value=63 Score=30.21 Aligned_cols=96 Identities=8% Similarity=-0.023 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHH---
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC--- 231 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~--- 231 (461)
++..+..-|.+.|++++|.+.|.++...-..+. ...+..++..+...+++..+...+.++.....-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567788999999999999999999987533333 456778888999999999999999887643322333332221
Q ss_pred -HHHHHHhcCCHHHHHHHHHhC
Q 012539 232 -LVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 232 -li~~~~~~g~~~~A~~~~~~~ 252 (461)
-.-.+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 122344578899998887665
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.91 E-value=55 Score=26.90 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=66.5
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHhh--ccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 244 EALDVINKM-PMKPHAG---AWGALLNACRMYKNTEMGELASRKLVE--LETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 244 ~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
++.+.|... ..+.|+. .|-..+..+ ..++...+..+|..|.. ++..-+..|...+..+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444 2334554 444444433 23446688888888875 4555667899999999999999999999998
Q ss_pred HHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 012539 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370 (461)
Q Consensus 318 m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 370 (461)
-++.+-.|. +.......+...+|.+.++
T Consensus 141 GI~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 141 GAENNCRPY-------------------------NRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCccH-------------------------HHHHHHHHHHHHHHHhcCC
Confidence 877766541 2333445556677777776
No 276
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.32 E-value=20 Score=28.01 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKERN---VYTWTSVIGGLAMNGA--GEKSLELFSLMKQAGVRPNEV 191 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 191 (461)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4568888999999999999999997663 2445555556665432 456777888887776554433
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.07 E-value=23 Score=30.36 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC
Q 012539 28 AMISACAKCGDVDLARKMFDEMP 50 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~ 50 (461)
+.+...++.|+++....+++.-.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC
Confidence 44555667777777777777544
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=62.50 E-value=51 Score=25.38 Aligned_cols=33 Identities=9% Similarity=-0.175 Sum_probs=16.3
Q ss_pred CcCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHc
Q 012539 86 KLNEVSMVSVLSACTHLGA---LDQGRWAHVYIERN 118 (461)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~ 118 (461)
.|+..+-....-++.++.+ ..++..+++.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~ 71 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE 71 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 3455444444444444443 34555566655554
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.14 E-value=39 Score=28.82 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=46.1
Q ss_pred cccCCchHHHHHHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVV---CQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
++.|+++..+.+++.+..++.. .-.+.+...+..|+.+-+..+++.-..+ |..-++.|. ..+..|+.+ +
T Consensus 13 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~ 87 (285)
T 1wdy_A 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL-LAAIAGSVK----L 87 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHTCHH----H
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHHcCCHH----H
Confidence 4578888888888887654321 2224556667789998888888764433 222223333 334455544 3
Q ss_pred HHHHHHCCCCcC
Q 012539 77 FHLMQIHDVKLN 88 (461)
Q Consensus 77 ~~~m~~~~~~p~ 88 (461)
++.+.+.|..++
T Consensus 88 v~~Ll~~g~~~~ 99 (285)
T 1wdy_A 88 LKLFLSKGADVN 99 (285)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHcCCCCC
Confidence 444445555443
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.35 E-value=1.6e+02 Score=30.99 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=73.7
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHH
Q 012539 29 MISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108 (461)
Q Consensus 29 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 108 (461)
++..+...|..+-|.++..-++. ++..-..+..+|...|++++|...|++.- .|+.++...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 66777788999988887776665 55555678899999999999999998864 233221110000 0000
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCH----HHHHHHHHHHHhCC
Q 012539 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM----KERNV----YTWTSVIGGLAMNG 169 (461)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g 169 (461)
..++... +. .......|..++..+-+.+.++-+.++-+.. ...|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111100 00 0112336677778888888777766554432 22233 35666666665443
No 281
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=55.63 E-value=65 Score=24.43 Aligned_cols=74 Identities=11% Similarity=-0.014 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhhcC---cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH
Q 012539 185 GVRPNEVTFVSVLRGCCVVG---LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG 259 (461)
Q Consensus 185 g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 259 (461)
+-.|+..|-..+.-++.++. +..+|..++..+.+. +-.-.....-.|.-++.+.|++++|.+..+.+ ...|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33455555444444555543 455678888777654 21112344455666788888888888888777 5566544
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.51 E-value=82 Score=25.24 Aligned_cols=163 Identities=8% Similarity=0.017 Sum_probs=88.9
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 012539 42 ARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121 (461)
Q Consensus 42 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 121 (461)
--.+++.+..+|.......+.+..+.|.... ...+.++.. .++...-...+.++...+..+.... +..+.. .
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~-L~~~l~---d 87 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEP-LIKALK---D 87 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHH-HHHHTT---C
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHH-HHHHHc---C
Confidence 3344555566677666666777777766433 333334433 3466665666666666665433322 222222 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
++..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 56666666777777777655444455555566666666666666666653 34444444433 345555555566666
Q ss_pred hcCcHHHHHHHHHHhh
Q 012539 202 VVGLVEEGREHFDSMR 217 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~ 217 (461)
..|.. ++...+..+.
T Consensus 164 ~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 164 EIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHCSH-HHHHHHHHHH
T ss_pred HhCch-hHHHHHHHHH
Confidence 65543 3444444444
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.34 E-value=52 Score=24.76 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCC
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCGK--SREALHLFHLMQIHDVK 86 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 86 (461)
.+.++.-|...|+.++|.+.++++..|. ......+..+.-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566777777788888888887776552 2233344444443332 34556666666665543
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.80 E-value=72 Score=26.99 Aligned_cols=23 Identities=4% Similarity=-0.177 Sum_probs=15.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 012539 60 MLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
-+..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566777777777777766543
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.70 E-value=2e+02 Score=27.65 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH-------HH-HHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNV-------YT-WTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
..++|.++..|...+.++.|..+.....-|.. .. +.-+...+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788899999999999999999998764421 12 223455677789999999888887653
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.40 E-value=45 Score=26.00 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCC
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCGK--SREALHLFHLMQIHDVK 86 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 86 (461)
.+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4556777777777777777777776552 2233333344433222 33455566666655543
No 287
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.52 E-value=96 Score=28.64 Aligned_cols=295 Identities=13% Similarity=0.090 Sum_probs=120.4
Q ss_pred ccCCchHHHHHHhcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHEPDVV--CQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
+.|+++-.+.+++.+..++.. ...+.+...++.|+.+-+..+++.-... +..-++. +...+..|+.+-+.-+
T Consensus 23 ~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L-- 99 (437)
T 1n11_A 23 FMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNMVKLL-- 99 (437)
T ss_dssp HHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHHHHHH--
T ss_pred HCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHH--
Confidence 346666666666655443321 1122344445567777666666653322 2222222 2233445554433332
Q ss_pred HHHHCCCCcCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 012539 79 LMQIHDVKLNEV--SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV--TLGTALVDMYSKCGNMNKAMDFFWGMKERN 154 (461)
Q Consensus 79 ~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 154 (461)
.+.|..|+.. .-.+.+...+..|+.+.+..+++ .+..++. ....+.+...++.|+.+-+..+++.-..++
T Consensus 100 --l~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 173 (437)
T 1n11_A 100 --LENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173 (437)
T ss_dssp --HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred --HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 3333333211 00112223344555554444433 2222110 001123344456677766666655433221
Q ss_pred ---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh-
Q 012539 155 ---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV---TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE- 227 (461)
Q Consensus 155 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~- 227 (461)
...++. +...+..|+.+ +++.+.+.|..|+.. ..+ .+...+..|+.+-+..+++. |..++..
T Consensus 174 ~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~ 242 (437)
T 1n11_A 174 AAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQY-----GGSANAES 242 (437)
T ss_dssp CCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHHHT-----TCCTTCCC
T ss_pred CCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHc-----CCCCCCCC
Confidence 111112 22233445543 334444444444321 112 23334456666655555542 3222211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 228 -HYGCLVDLYGRAGRLDEALDVINKMP--MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 228 -~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
.-...+...+..|..+-...+++.-. ...+...++.|. .....|+.+.+..+.+.-...+..+..-.+.|. ..+.
T Consensus 243 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 320 (437)
T 1n11_A 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH-VASH 320 (437)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHH-HHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHH-HHHH
Confidence 11122333445677666655555431 011222222232 334566666666555543333333322222332 2334
Q ss_pred cCChhHHHHHHHHHHhCCCc
Q 012539 305 SKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g~~ 324 (461)
.|+.+- .+.+.+.|..
T Consensus 321 ~g~~~~----v~~Ll~~gad 336 (437)
T 1n11_A 321 YGNIKL----VKFLLQHQAD 336 (437)
T ss_dssp SSCSHH----HHHHHHTTCC
T ss_pred cCcHHH----HHHHHhcCCC
Confidence 566543 3444455554
No 288
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=45.37 E-value=7.2 Score=22.33 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=10.7
Q ss_pred ccccc-ccCccCCCCC
Q 012539 446 RFHHF-KEGKCSCKGY 460 (461)
Q Consensus 446 ~~h~~-~~g~~s~~~~ 460 (461)
.=|.. ..|.|||+-|
T Consensus 14 kPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 14 LPHRLNSLGGCRCGKY 29 (42)
T ss_dssp TTSCCCTTSSBTTTTB
T ss_pred CCceecCCceeccccc
Confidence 33444 6899999976
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.17 E-value=1.4e+02 Score=25.33 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 68 (461)
+|..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 444444444444444444333333333333344443334444444444
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.16 E-value=1.1e+02 Score=23.86 Aligned_cols=50 Identities=10% Similarity=-0.059 Sum_probs=37.6
Q ss_pred HHHHHHHHHhh--ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 276 MGELASRKLVE--LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 276 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
.+..+|..|.. ++..-+..|...+..+...|++.+|.++++.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36777777765 445556678888888889999999999998877766544
No 291
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=44.42 E-value=6.2 Score=25.79 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=18.0
Q ss_pred ceEEEecCCcccccccCccCCC
Q 012539 437 REIIVRDRNRFHHFKEGKCSCK 458 (461)
Q Consensus 437 ~~~~~~~~~~~h~~~~g~~s~~ 458 (461)
..|-+.|.+..|+|+|||-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677899999999999996543
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.39 E-value=1.4e+02 Score=24.55 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCC--CCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 141 NKAMDFFWGMKE--RNV---YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 141 ~~A~~~~~~~~~--~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
+.+.+.|..... .|+ ..|-..+..+ ..+...++.++|..|...|+--. ...|......+...|++.+|..+|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444544432 343 3455555444 23446688888888877776555 4556666777777888888888887
Q ss_pred HhhhhcCCcc
Q 012539 215 SMRREYGIEP 224 (461)
Q Consensus 215 ~~~~~~~~~p 224 (461)
.-++. +-.|
T Consensus 140 ~GI~~-~A~P 148 (202)
T 3esl_A 140 LGAEN-NCRP 148 (202)
T ss_dssp HHHHT-TCBS
T ss_pred HHHHc-CCcc
Confidence 76654 5555
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.06 E-value=96 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=18.0
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 224 PWLEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
+++......+..+.+.|+-++|.++|-+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3444455566677777777777777644
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.16 E-value=2e+02 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPERD 53 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 53 (461)
....+|.-|...|+.++|...++++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 35678888999999999999999987653
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.11 E-value=69 Score=24.55 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=26.7
Q ss_pred HHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 80 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445555444322 2333333333444455566655555444343333334555555553
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.91 E-value=1.9e+02 Score=25.53 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPER 52 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 52 (461)
...++.-|...|+.++|...++++..|
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 456788888888999999998888765
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=39.90 E-value=2.3e+02 Score=26.11 Aligned_cols=283 Identities=7% Similarity=-0.018 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCcCHHHH---
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE--------RDPIAWNAMLAGYAQCG-KSREALHLFHLMQIHDVKLNEVSM--- 92 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~--- 92 (461)
....|...|.+.|+.++...++..... +....-..|+..+.... ..+.-.++..+..+.. +-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 455678889999999999888887653 12334556676666543 3344444444443311 1111222
Q ss_pred ---HHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCHHHH
Q 012539 93 ---VSVLSACTHLGALDQGRWAHVYIERNRLKMT-----VTLGTALVDMYSKCGNMNKAMDFFWGMKE------RNVYTW 158 (461)
Q Consensus 93 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~ 158 (461)
.-++..|...|++.+|..++..+.+.-...| ..++..-+.+|...|++.++...+..... +++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2466777888888888877777765321211 34455566778888888888777755431 222211
Q ss_pred H----HHHHHHH-hCCChHHHHHHHHHHHHc-C--CCCC---HHHHHHHHHHHhhcCcHHHHHHHH-HHhhhhcCCccCh
Q 012539 159 T----SVIGGLA-MNGAGEKSLELFSLMKQA-G--VRPN---EVTFVSVLRGCCVVGLVEEGREHF-DSMRREYGIEPWL 226 (461)
Q Consensus 159 ~----~li~~~~-~~g~~~~A~~~~~~m~~~-g--~~p~---~~~~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~p~~ 226 (461)
. .-.-.+. ..+++..|...|-+..+. . ..|. ...|..|.. ..... ..+-..++ ......+ ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~~~-r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IMLGQ-SDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTC-GGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHcCC-HHHHHHHhcccccccc-CCccH
Confidence 1 1122345 678888888777665321 0 0111 122322222 22222 11111222 1111112 24555
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKMP--MKPHAGAW---GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
..+..++.+| ..+++.+...+++... +..|.... ..+..... ...+.++ ..|-...++..+...
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHHH
Confidence 5555555554 4557777677666652 33454421 11111100 1111111 235555677777776
Q ss_pred HhhcCChhHHHHHHHHHHhCCCc
Q 012539 302 YAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
+.- ..++++..+-+|...|.-
T Consensus 326 l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTTSS
T ss_pred HCc--CHHHHHHHHHHHHHCCCe
Confidence 654 678999999999988763
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.69 E-value=1.4e+02 Score=23.48 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHhh--ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 277 GELASRKLVE--LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 277 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
...+|..|.. ++..-+..|...+..+...|++.+|.++++.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5667777764 445566688889999999999999999999888776554
No 299
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.49 E-value=37 Score=24.04 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=27.1
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHH
Q 012539 37 GDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREAL 74 (461)
Q Consensus 37 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 74 (461)
.+.+.|.++++.++.+.+.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35777777877777777777777777776666655553
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.06 E-value=2.1e+02 Score=25.23 Aligned_cols=65 Identities=8% Similarity=0.089 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC--hhHHHHHHHHHHhCCCc
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN--WDRVINVRQIMKAKGVK 324 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~ 324 (461)
....++.=|...|+.++|.+.++.+..-.-....++..+..+..+.+. .+...+++..+.+.|+-
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 456777778899999999998888752110111234455555555433 45566788888776663
No 301
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=38.03 E-value=3e+02 Score=27.07 Aligned_cols=169 Identities=10% Similarity=-0.060 Sum_probs=91.3
Q ss_pred CHHHHHHHHHhcCC---CCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 012539 139 NMNKAMDFFWGMKE---RNVY----TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 139 ~~~~A~~~~~~~~~---~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
+.+.|...|....+ .+.. .+..+...+...+...++...+...... .++.....-.+....+.|+++.+..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 66777777766532 1222 2333333334445355667777765543 2343333344444456799999999
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.|..|... ......-.--+..++...|+.++|..+|+.+. .+ .+|..++.+ .+.|..-.. ......+..
T Consensus 307 ~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~--~~fYg~lAa-~~Lg~~~~~-----~~~~~~~~~ 375 (618)
T 1qsa_A 307 WLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQ--RGFYPMVAA-QRIGEEYEL-----KIDKAPQNV 375 (618)
T ss_dssp HHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TS--CSHHHHHHH-HHTTCCCCC-----CCCCCCSCC
T ss_pred HHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cC--CChHHHHHH-HHcCCCCCC-----CCCCCChhH
Confidence 99988542 11223334456667788899999999999884 23 244444433 222221000 000011111
Q ss_pred cc-----hHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 292 HG-----AYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 292 ~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.. .-..-+..+...|....|...+..+.+
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 11 122344566778888888877777654
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.90 E-value=1.9e+02 Score=24.71 Aligned_cols=182 Identities=7% Similarity=-0.037 Sum_probs=84.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCcHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE---VTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~ 208 (461)
...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+ +.+.+.|..++. .-.+.|. ..+..|..+-
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~ 110 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALY-YAVDSGNMQT 110 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHH
Confidence 3344556666555555542221111011122233445554433 333344554432 1122232 3345566665
Q ss_pred HHHHHHHhhhhcCCccCh---hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 209 GREHFDSMRREYGIEPWL---EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
+..+++. |..++. .-+...+...+..|+.+-+..+++.-+...+...-.+.+...+..|+.+.+..+++.-.
T Consensus 111 v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 111 VKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 5555443 433332 12234445556678877777666665322333122334445567788888877777655
Q ss_pred hccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCC
Q 012539 286 ELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLP 327 (461)
Q Consensus 286 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 327 (461)
..+..+..-....+......|.. ++.+.+.+.|..+..
T Consensus 186 d~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 186 STNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred CCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 54433322222212222334443 455556677766543
No 303
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=37.81 E-value=8 Score=22.34 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=9.6
Q ss_pred cccccCcchhhH
Q 012539 416 KNLRVCWDCHDV 427 (461)
Q Consensus 416 ~~~~~c~~~~~~ 427 (461)
-++|+|.+|+.-
T Consensus 15 ~~YRvC~~CgkP 26 (44)
T 2lo3_A 15 IQYRVCEKCGKP 26 (44)
T ss_dssp CCEEECTTTCCE
T ss_pred ccchhhcccCCc
Confidence 368999999854
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.68 E-value=97 Score=23.88 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=26.8
Q ss_pred HHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 80 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 444555443332 233344433444445566666665554444443333345555555543
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.83 E-value=96 Score=24.60 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=13.1
Q ss_pred HHHHcCCHHHHHHHHhhCC
Q 012539 32 ACAKCGDVDLARKMFDEMP 50 (461)
Q Consensus 32 ~~~~~g~~~~A~~~~~~m~ 50 (461)
..+..|+.+....+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3456778888888877544
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.50 E-value=4.1e+02 Score=27.80 Aligned_cols=48 Identities=6% Similarity=-0.143 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcC
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAG 240 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g 240 (461)
-|..++..+.+.+.++.+.++-+..+.... ..| ...|..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 467788888888888888887777765311 112 235666666655544
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.73 E-value=51 Score=23.32 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 012539 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667655443
No 308
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.05 E-value=57 Score=29.34 Aligned_cols=219 Identities=10% Similarity=-0.022 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
.|..-++.| ...+..|+.+.+..+++.-... |..-++.| ...+..|+.+-+..++ +.|..++...-.+.+.
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTAKYLA----SVGEVHSLWHGQKPIH 89 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHHHH----HHCCCCCCBTTBCHHH
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHHHHHH----HCCCCccccCCCCHHH
Confidence 455555554 4455789999999998864332 33333344 3345567665444443 3343333322223344
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchH-------------------HHHHHHHHHHhcC--CHHHHHHHHHhcCC---C
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVT-------------------LGTALVDMYSKCG--NMNKAMDFFWGMKE---R 153 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------------~~~~li~~~~~~g--~~~~A~~~~~~~~~---~ 153 (461)
..+..|+.+-+..+++.....+..++.. ...+.+...+..| +.+-+..+++.-.. .
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~ 169 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence 4456788888877777655545444320 0112444556677 77767666665332 2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh--
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-AGVRPN---EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE-- 227 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-- 227 (461)
|...++.|.. .+..|+.+-+..+++.-.. .+..++ ..-.+.|. ..+..|..+-+..+++ .|..++..
T Consensus 170 d~~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~-----~gad~~~~d~ 242 (364)
T 3ljn_A 170 DKADETPLMR-AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVE-----MGIDVNMEDN 242 (364)
T ss_dssp CTTSCCHHHH-HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHT-----TTCCTTCCCT
T ss_pred CCCCCCHHHH-HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHH-----cCCCCCCCCC
Confidence 3223333333 3456666544444433111 000022 11222232 3345677665554443 25554421
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.-..-+..-++.|+.+-+.-+++.-
T Consensus 243 ~g~tpL~~A~~~g~~~~v~~Ll~~~ 267 (364)
T 3ljn_A 243 EHTVPLYLSVRAAMVLLTKELLQKT 267 (364)
T ss_dssp TSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHhChHHHHHHHHHcC
Confidence 1122333445668887777777763
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.54 E-value=1.3e+02 Score=22.97 Aligned_cols=63 Identities=10% Similarity=0.084 Sum_probs=40.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 243 (461)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345667777775433 3455555556666788888888654 44455666666777888888764
No 310
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.92 E-value=1.5e+02 Score=24.65 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 012539 232 LVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~ 252 (461)
.+-.|.+.|.+++|.+++++.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 344577778888888887776
No 311
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.85 E-value=2e+02 Score=23.05 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC-----------------HHHHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN-----------------EVSMVSVLSA 98 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------------~~t~~~ll~~ 98 (461)
.|.+..++-++...-.-...-|-.| +|-+..++..|+..++.+....+.-| .+-++.+...
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l 123 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL 123 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH
Q ss_pred HhccCCHHHHHHHHHH
Q 012539 99 CTHLGALDQGRWAHVY 114 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~ 114 (461)
|...|+.++|...+..
T Consensus 124 ltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 124 CTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHhhhHhhh
No 312
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.76 E-value=1.9e+02 Score=22.74 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=35.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HhhcCcHHHHHHHHHHhhh
Q 012539 167 MNGAGEKSLELFSLMKQAGVRP--NEVTFVSVLR-G-----CCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~-~-----~~~~g~~~~a~~~~~~~~~ 218 (461)
..|++-+|.++|+........| ....+..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888887654455 4455666666 2 2346888888888877755
No 313
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=31.09 E-value=31 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.001 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhh
Q 012539 349 PRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGL 403 (461)
Q Consensus 349 ~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (461)
++..+++..+++...+++..|+.||...+-. +..-+.++.+...||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 4456778888888899999999999755432 1222345666677763
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.99 E-value=1.8e+02 Score=22.31 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH
Q 012539 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243 (461)
Q Consensus 180 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 243 (461)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 34555665543322 3444444444555666666666543 33445555555566666666653
No 315
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.47 E-value=80 Score=23.36 Aligned_cols=43 Identities=9% Similarity=-0.072 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012539 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 118 (461)
+|+.+....+.|+...-..-+..+...++++.|..++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666667666555445555567788999999988887753
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.26 E-value=3.6e+02 Score=25.50 Aligned_cols=139 Identities=17% Similarity=0.058 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
..+.+.|.++ +.+.|++-....|..-.+.+...|++++|.++--..++ ++..|.+.+-..=..-|+..--+..|
T Consensus 342 l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 3455544443 44566666666666667778888888888887766654 45555555544444456666666777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
.-+.+.| +.+..--.-+++.-..+|+.+-...++.+ ..+..+.+.-..+ +..+..-|+.+|.+.+
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 7776665 34443333445555556665555555432 2445544432222 3335556666666554
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.24 E-value=2.3e+02 Score=23.21 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHH---HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCC
Q 012539 57 WNAMLAGYA---QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA-----LDQGRWAHVYIERNRL 120 (461)
Q Consensus 57 ~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 120 (461)
..-+|+++. +-.+++.|+-.+-+|++.| .|....-..++.+....|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334455553 5578999999999999998 7766666666666665553 2333344444444453
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.55 E-value=85 Score=24.65 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=39.4
Q ss_pred HHHHHHHHH-HHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCH
Q 012539 71 REALHLFHL-MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN--RLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 71 ~~A~~~~~~-m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 140 (461)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444433 34466666543 345556666666666777777777766 5444544433356667776644
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.18 E-value=2.6e+02 Score=24.97 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCC
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCG-KSREALHLFHLMQIHDVK 86 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~ 86 (461)
...++.-|...|+.++|.+.++++..|. ......+..+.-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4568888889999999999999998763 122223333322211 134455666777666543
No 320
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.01 E-value=1.1e+02 Score=24.88 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 012539 39 VDLARKMFDEMPER--------DPIAWNAMLAGYAQCGKSREALHLFHLM 80 (461)
Q Consensus 39 ~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m 80 (461)
++.|+.+|+.+.+. ....--..+..|.++|.+++|.++|++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
No 321
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.46 E-value=3.1e+02 Score=24.97 Aligned_cols=234 Identities=12% Similarity=0.101 Sum_probs=115.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHhcc
Q 012539 28 AMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVLSACTHL 102 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~ 102 (461)
+.+...+..|+++-+..+++.-..++ .... +.+...+..|+.+-+..+++ .|..++.. .-.+.+...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHC
Confidence 34555678899999999998754432 2222 33444556777665554444 34333211 111234444566
Q ss_pred CCHHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHH
Q 012539 103 GALDQGRWAHVYIERNRLKMTVT--LGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 177 (461)
|+.+-+..+ ++.|..++.. ...+.+...++.|+.+-+..+++.-... +...++. +...+..|+.+ +
T Consensus 91 g~~~~v~~L----l~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~ 161 (437)
T 1n11_A 91 GHTNMVKLL----LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR----V 161 (437)
T ss_dssp TCHHHHHHH----HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----H
T ss_pred CCHHHHHHH----HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----H
Confidence 776654444 4445443321 1122445566788988888887754322 2222222 23334566654 3
Q ss_pred HHHHHHcCCCCCHH---HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhH--HHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 178 FSLMKQAGVRPNEV---TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH--YGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 178 ~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.+.+.+.|..|+.. ..+ .+...+..|+.+-...++ +. |..++... -...+...+..|+.+-+..+++.-
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLT-PLHVAVHHNNLDIVKLLL----PR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCC-HHHHHHHTTCHHHHHHHG----GG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 44444555554421 112 233344556665444433 32 44443211 122344456778887777777643
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 253 P--MKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 253 ~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
. ..++....+.|. .....|+.+....+++
T Consensus 236 ~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~ 266 (437)
T 1n11_A 236 GSANAESVQGVTPLH-LAAQEGHAEMVALLLS 266 (437)
T ss_dssp CCTTCCCTTCCCHHH-HHHHTTCHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHH-HHHHCCCHHHHHHHHh
Confidence 1 112222222333 3345677665555544
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.56 E-value=1.9e+02 Score=22.66 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHHh
Q 012539 134 YSKCGNMNKAMDFFWG 149 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~ 149 (461)
.+..|+.+....++..
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3445666666555553
No 323
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.41 E-value=1.5e+02 Score=23.15 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc-CCccChhHHHHHHHHHHhcCCHH
Q 012539 172 EKSLELFSL-MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY-GIEPWLEHYGCLVDLYGRAGRLD 243 (461)
Q Consensus 172 ~~A~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~ 243 (461)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|.---++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544444 356677776543 345666666667777888888875431 22345555555667788888763
No 324
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.31 E-value=1.1e+02 Score=23.32 Aligned_cols=34 Identities=3% Similarity=-0.029 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455555555554433333332234444554443
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.00 E-value=1.5e+02 Score=22.17 Aligned_cols=60 Identities=5% Similarity=0.000 Sum_probs=28.0
Q ss_pred HHHCCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 80 MQIHDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 80 m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4445555444332 3333443333 3445666666666555444444333345555555543
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.59 E-value=1.8e+02 Score=27.86 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccCh--hHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL--EHY-GCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
...++.++..|...+.++.|..+.....--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456677777777777888877777653100000111 111 12344555667777777776654
No 327
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.40 E-value=1.4e+02 Score=24.30 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=24.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
+...+..|+.+.+..+++.-...+..+..-. +.+....+.|+.+-+.-+++..
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhh
Confidence 4444566777766666554322222221111 1233335566665555555443
No 328
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.18 E-value=3e+02 Score=23.24 Aligned_cols=181 Identities=8% Similarity=-0.076 Sum_probs=88.2
Q ss_pred hCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcCCCCc
Q 012539 48 EMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL----DQGRWAHVYIERNRLKMT 123 (461)
Q Consensus 48 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~ 123 (461)
.+..+|...-...+.++.+.|. .+++..+.++.. .++...-...+.++...+.. .....++...... .++
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~ 104 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKS 104 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSC
T ss_pred HHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCC
Confidence 3445666655566666666664 345555555554 34555555666666666532 2222233221111 345
Q ss_pred hHHHHHHHHHHHhcCC-----HHHHHHHHH-hcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGN-----MNKAMDFFW-GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~-----~~~A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
..+-...+.+..+.|. ...+...+. .+..++...-...+.++...|..+ ++..+.++.. .|+...-...+
T Consensus 105 ~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 180 (280)
T 1oyz_A 105 ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 5555555555555441 233444433 344567666666667777766532 4444444443 34544444444
Q ss_pred HHHhhcC-cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 198 RGCCVVG-LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 198 ~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
.+....+ ....+...+..+.. .++..+-...+.++++.|..
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCH
Confidence 4554443 12333333333332 24455555555566666543
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.42 E-value=2.9e+02 Score=22.97 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhh--ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 275 EMGELASRKLVE--LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 275 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
+....+|..|.. ++..-+..|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466678888775 445566688899999999999999999999877766544
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.05 E-value=1.2e+02 Score=22.69 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=26.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
.++..+...+.+-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555555556666777777766655556666555555555554
No 331
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.46 E-value=2.3e+02 Score=23.01 Aligned_cols=182 Identities=11% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV--SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
+.+...++.|+.+.+..+++.+.+.|..++..... +.+...+..|+.+-+..+++ ....+........+.+...+.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCCHHHHHHH
Q ss_pred cCCHHHHHHHHH-------hcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcCcH
Q 012539 137 CGNMNKAMDFFW-------GMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT---FVSVLRGCCVVGLV 206 (461)
Q Consensus 137 ~g~~~~A~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~ 206 (461)
.|+.+-+..+++ ....++...++.+..+..... .++++.+.+.|..++... -.+.+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Q ss_pred HHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
+-...+++.-. .+......-...+...+..|+.+-+..+++
T Consensus 164 ~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 164 SMVQLLLQHGA---NVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHHHTTC---CTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 332
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.11 E-value=2.6e+02 Score=21.61 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCC--CCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 141 NKAMDFFWGMKE--RNVY---TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 141 ~~A~~~~~~~~~--~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
+.+.+.|..... .|+. .|-..+.. .+++.++|..|...|+--. ...|......+...|++.+|..+|+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445566655442 3442 34333332 2348888999888877655 5556677777778899999999988
Q ss_pred HhhhhcCCcc
Q 012539 215 SMRREYGIEP 224 (461)
Q Consensus 215 ~~~~~~~~~p 224 (461)
.-++. +-.|
T Consensus 126 ~Gi~~-~A~P 134 (152)
T 4a1g_A 126 RGIQN-QAEP 134 (152)
T ss_dssp HHHHT-TCBS
T ss_pred HHHHc-CCcc
Confidence 77664 5555
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.55 E-value=39 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 012539 70 SREALHLFHLMQIHDVKLNEVSMVSVLSAC 99 (461)
Q Consensus 70 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 99 (461)
.++|.+.|.+|++..-.+...||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367778888777654444556677666666
No 334
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.35 E-value=1.8e+02 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 177 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
+++.+.+.|+.|...++..++..+.+.=.++.+..+++.+..+
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 4555666778888888877887777777788888888877754
No 335
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.32 E-value=2e+02 Score=19.83 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Q 012539 137 CGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 174 (461)
....++|.++++.+..++..+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 56677888888888888888888888888777754433
No 336
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.17 E-value=3.4e+02 Score=24.14 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCC
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKERNV---YTWTSVIGGLAMNG-AGEKSLELFSLMKQAGVRP 188 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p 188 (461)
..++.-|...|+.++|...++++..|.. .....+..++-+.. .-+.+..++..+.+.|+-+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4578888888999999999998876632 22333333332211 2345666777776665443
No 337
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.14 E-value=4.4e+02 Score=23.82 Aligned_cols=61 Identities=28% Similarity=0.342 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKERN----VYTWTSVIGGLAMNGA--GEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 189 (461)
.+++.-|...|++++|...++++..|+ ...+..+..++ ..++ -+.+..++..+...++-+.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCH
Confidence 456777777777777777777777664 12333333333 2222 2445556666665554433
No 338
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.07 E-value=3.4e+02 Score=22.56 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc
Q 012539 172 EKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP 224 (461)
Q Consensus 172 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 224 (461)
+++.++|..|...|+--. ...|......+...|++.+|..+|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 467788888888776655 455666677777788888888888877664 5555
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.02 E-value=5.9e+02 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=22.8
Q ss_pred hhHHHHHHHH-----HHhcCCHHHHHHHHHhCCCCCC
Q 012539 226 LEHYGCLVDL-----YGRAGRLDEALDVINKMPMKPH 257 (461)
Q Consensus 226 ~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~p~ 257 (461)
..++..|.+. +...|+++.|++.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455555443 3678999999999999976664
No 340
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.92 E-value=1.3e+02 Score=23.05 Aligned_cols=61 Identities=5% Similarity=-0.001 Sum_probs=34.2
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 79 LMQIHDVKLNEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 79 ~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
.|.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35556666555433 3444444444 4456777777777665555544444456666666654
No 341
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.45 E-value=4.2e+02 Score=23.33 Aligned_cols=127 Identities=10% Similarity=0.067 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHC-C----CCcCHHHHHHH---HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 69 KSREALHLFHLMQIH-D----VKLNEVSMVSV---LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~-~----~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
+.++|..+|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...+..-++..++..=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 457899999887653 1 33443322222 222222222 35677788889999888888888888888889
Q ss_pred HHHHHHHHhcCC--CCHHHHHHH--HHH----HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 141 NKAMDFFWGMKE--RNVYTWTSV--IGG----LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 141 ~~A~~~~~~~~~--~~~~~~~~l--i~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
+.+..+++.+.. +....+-++ +.. ..+..+.++.+..++.... ..+......++.-...
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~ 306 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFE 306 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHh
Confidence 999999997763 333322221 111 2233467777777765321 2234455555543333
No 342
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.92 E-value=3e+02 Score=24.88 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVT 125 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~ 125 (461)
.+.++.-|...|+.++|...++++...... ..+....+..+.-+.+ ..+...+++..+.+.|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 466777777777777777777777432111 1223333444444332 2344555666666555444433
No 343
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.83 E-value=2.7e+02 Score=20.79 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=29.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcC-cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 181 MKQAGVRPNEVTFVSVLRGCCVVG-LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 181 m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+. +...+..|.---++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555554332 2344444443 444566666666443 3333444444455556666554
No 344
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.72 E-value=3.5e+02 Score=22.07 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=33.2
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 58 NAMLAGYA---QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 58 ~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
.-+|+++. +-.+++.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555554 55789999999999999987777766666666665554
No 345
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.52 E-value=3.3e+02 Score=24.05 Aligned_cols=82 Identities=6% Similarity=-0.091 Sum_probs=35.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC
Q 012539 234 DLYGRAGRLDEALDVINKMPM-------KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~-------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 306 (461)
..-+..|+.+-+..+++.-.. ..|..-++.|. ..+..|+.+.+..+++.-...+..+..-.+.| ..-+..|
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g 255 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAA 255 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTC
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhC
Confidence 334566777766666664311 11222222222 33456666655544443222222222222222 2233456
Q ss_pred ChhHHHHHHHH
Q 012539 307 NWDRVINVRQI 317 (461)
Q Consensus 307 ~~~~a~~~~~~ 317 (461)
..+-+.-+++.
T Consensus 256 ~~~~v~~Ll~~ 266 (364)
T 3ljn_A 256 MVLLTKELLQK 266 (364)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHc
Confidence 66555555543
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.32 E-value=1e+02 Score=23.31 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=17.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 101 (461)
+..+...+.+-.|.++++.+.+.+...+..|..-.|..+..
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33333333444455555555444444444444444444333
Done!