BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012541
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 16 ESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
++L YHPD NK PGAEEKFKEI+ AY+VLSD KR ++DR+GE G+ G
Sbjct: 27 QALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 14/238 (5%)
Query: 114 DIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQR 173
DI++++ S EE G + ++ C C G G K ++ C +C G+G T++
Sbjct: 13 DIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG-AVKKCTSCNGQGIKFVTRQ 71
Query: 174 TPFGLISQVSTCSKCGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 231
+ + C C G G II D C+ C G ++ ++V + PG+ +G + +
Sbjct: 72 MGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK 131
Query: 232 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-- 289
GE + + GD+ + + RDG +L + +D AI G +E V G
Sbjct: 132 GEAD-QAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 290 MKDLRIPSGV-QPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEE 346
+K +P V PG ++ G+P P G N++I I DPE E
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMP---IPKYGG----YGNLIIKFTIKDPENHFTSE 241
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 16 ESLLYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQ 73
++L +HPD N AE+KFKE++ AYEVLSD KR +YDR+G G+TG G S
Sbjct: 26 KALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEA 85
Query: 74 G 74
G
Sbjct: 86 G 86
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
+HPD NK PGAE++F +IS AYE+LS++EKR+ YD +G +G
Sbjct: 45 WHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGPSSG 88
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG 74
++ YHPD NKSP AE KF+EI+ AYE LSD +R YD G + T G S S G
Sbjct: 32 AMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG-KGQSGPSSG 88
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
+L +HPD N +PGA E FK I +AY VLS+ EKR YD+FG +G
Sbjct: 32 ALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPSSG 78
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58
+L YHPD K+P EKFK+IS AYEVLSD +KR +YD+ GE
Sbjct: 31 ALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE 70
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 31/36 (86%)
Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 55
YHPD++K P AE +FKE++ A+EVLSD+++R+ YD+
Sbjct: 33 YHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 68
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 17 SLLYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
++ YHPD N+ AE KFKEI AYEVL+D +KR+ YD++G A
Sbjct: 28 AMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58
+L +HPD K+P E+FK+IS AYEVLSD++KR +YD+ GE
Sbjct: 33 ALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 17 SLLYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
++ YHPD N+ AE KFKEI AYEVL+D +KR+ YD++G A
Sbjct: 28 AMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 17 SLLYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
++ YHPD N+ AE KFKEI AYEVL+D +KR+ YD++G A
Sbjct: 28 AMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 57
+L YHPD K G EKFKEIS A+E+L+D +KR +YD++G
Sbjct: 33 ALKYHPD--KPTGDTEKFKEISEAFEILNDPQKREIYDQYG 71
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 201 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 260
R G +G K + + + PG G + + +G+++ + L + R
Sbjct: 26 RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 261 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 319
DG +L + + + E++LG S ++T++G L VQP T G+P NPS
Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 320 VRGDHLFIVNVLIPKDISDPERALVEE 346
RG+ + V P ++D ++ ++E
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAIDE 171
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 17 SLLYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61
+L YHPD N +P A +KFKEI++A+ +L+D KR++YD++G G+
Sbjct: 42 ALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 204 GNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 263
G E ++ +++ V IP GV +G ++++G+G GDL++ +H+ G
Sbjct: 173 GMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGH 232
Query: 264 NLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGD 323
NL + + EA LG + V T++ L +P G Q G ++++ G + + + GD
Sbjct: 233 NLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHTGD 289
Query: 324 HLFIVNVLIPKDISDPERALVEEIA 348
++ +++P + R L +++A
Sbjct: 290 LFAVIKIVMPTKPDEKARELWQQLA 314
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56
YHPD++K AE KFK+++ A+EVL D+++R+ YD+
Sbjct: 56 YHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQL 92
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 214 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDY 273
++V I PG +G + GEG+ + + GDL + + RD +L K+++
Sbjct: 44 VEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPL 103
Query: 274 TEAILGTSMEVETVEGMKDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL 331
A+ G + V T++ ++L+IP V P + G P N P +GD + ++
Sbjct: 104 VRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDIC 162
Query: 332 IPKDISDPERALVEE 346
PK ++ ++ L++E
Sbjct: 163 FPKSLTPEQKKLIKE 177
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 20 YHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
YHPD NK P A+EKF +++ AYEVLSD+ KR YD +G +G
Sbjct: 35 YHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG 79
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 201 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 260
R G +G K + + + PG G + + +G+++ + L + R
Sbjct: 26 RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 261 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 319
DG +L + + + E++LG S ++T++G L VQP T G+P NPS
Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 320 VRGDHLFIVNVLIPKDISDPERALVE 345
RG+ + V P ++D ++ ++
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 134 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 193
I + E CD C G+GAK Q+C C G G V Q G + TC C G G
Sbjct: 6 IRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGT 61
Query: 194 IIIDHCRRCGGNGEVQ 209
+I D C +C G+G V+
Sbjct: 62 LIKDPCNKCHGHGRVE 77
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 17 SLLYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
+L +HPD N AE +FK+++ AYEVLSD +KR +YDR+G +G
Sbjct: 34 ALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSSG 82
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 119 LHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRT-PFG 177
+ L+F ++ G + V+ +TC+ C G G + +Q C C G G ++T T PF
Sbjct: 8 MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINTGPFV 65
Query: 178 LISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKR 212
+ STC +CGG G III C C G G+ + K+
Sbjct: 66 M---RSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 17 SLLYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 57
+L +HPD N AE+KFK +S AYEVLSD +KRS+YDR G
Sbjct: 34 ALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 17 SLLYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT----GEYDGLS 69
+L HPD N +P A F +I+ AYEVL D++ R YD++GE G+ G+Y+ S
Sbjct: 46 ALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWS 103
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 17 SLLYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT----GEYDGLS 69
+L HPD N +P A F +I+ AYEVL D++ R YD++GE G+ G+Y+ S
Sbjct: 27 ALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWS 84
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 241 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG------MKDLR 294
++ D+ L RDG ++ + EA+ G ++ V T++G KD+
Sbjct: 80 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV- 138
Query: 295 IPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
++PG K+ G+P P RGD + V+ P+ I R ++E++
Sbjct: 139 ----IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 187
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 20 YHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDRF 56
+HPD K+ AEE+F+ I++AYE L DDE ++ YD +
Sbjct: 44 HHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY 84
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 241 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG------MKDLR 294
++ D+ L RDG ++ + EA+ G ++ V T++G KD+
Sbjct: 73 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV- 131
Query: 295 IPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
++PG K+ G+P P RGD + V+ P+ I R ++E++
Sbjct: 132 ----IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 180
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 241 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG------MKDLR 294
++ D+ L RDG ++ + EA+ G ++ V T++G KD+
Sbjct: 71 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV- 129
Query: 295 IPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
++PG K+ G+P P RGD + V+ P+ I R ++E++
Sbjct: 130 ----IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 16 ESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDR 55
+ LYHPD N S A E+F IS AY VL R YDR
Sbjct: 41 QCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR 81
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 21 HPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56
HPD + ++P A E F+++ A E+L+++E R+ YD +
Sbjct: 49 HPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW 85
>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|B Chain B, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|C Chain C, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|D Chain D, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|E Chain E, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|F Chain F, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|G Chain G, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|H Chain H, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|I Chain I, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|J Chain J, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|K Chain K, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|L Chain L, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 109
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 211 KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHV 252
K S+ + +PPG G ++I+G+G + + GDLF + +
Sbjct: 37 KESILLTVPPGSQAGQRLRIKGKGLVSKTHT--GDLFAVIKI 76
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 18 LLYHPDINKS--PGAE-----EKFKEISSAYEVLSDDEKRSVYD 54
LLYHPD + P +KF EI A+++L ++E + YD
Sbjct: 42 LLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYD 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,096,128
Number of Sequences: 62578
Number of extensions: 524978
Number of successful extensions: 1157
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 39
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)