Query 012541
Match_columns 461
No_of_seqs 300 out of 2486
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.1E-97 2E-102 749.4 33.9 334 4-351 16-351 (371)
2 PRK14296 chaperone protein Dna 100.0 2.6E-84 5.7E-89 666.7 34.3 335 3-351 15-362 (372)
3 PRK14287 chaperone protein Dna 100.0 4.1E-82 8.9E-87 650.6 35.4 334 3-351 15-349 (371)
4 PRK14298 chaperone protein Dna 100.0 5E-82 1.1E-86 650.8 35.0 335 3-351 16-352 (377)
5 PRK14276 chaperone protein Dna 100.0 1.2E-81 2.7E-86 649.2 35.4 335 3-350 15-356 (380)
6 PRK14278 chaperone protein Dna 100.0 2.8E-81 6E-86 645.9 36.4 337 3-351 14-351 (378)
7 PRK14280 chaperone protein Dna 100.0 3.2E-81 7E-86 645.3 35.6 336 3-351 15-354 (376)
8 PRK14277 chaperone protein Dna 100.0 9.2E-81 2E-85 643.9 35.0 339 3-351 16-366 (386)
9 PRK14288 chaperone protein Dna 100.0 4.5E-81 9.8E-86 642.4 32.3 330 3-350 14-345 (369)
10 PRK14286 chaperone protein Dna 100.0 6.2E-81 1.3E-85 642.1 32.6 336 3-351 15-358 (372)
11 PRK14284 chaperone protein Dna 100.0 5.5E-80 1.2E-84 639.1 34.8 336 3-351 12-367 (391)
12 PRK14297 chaperone protein Dna 100.0 9.1E-80 2E-84 635.6 34.2 337 4-351 16-359 (380)
13 PTZ00037 DnaJ_C chaperone prot 100.0 7.2E-80 1.6E-84 640.4 30.4 323 3-352 39-368 (421)
14 PRK14281 chaperone protein Dna 100.0 4.4E-79 9.4E-84 633.3 35.5 345 3-350 14-372 (397)
15 PRK14279 chaperone protein Dna 100.0 4.1E-79 8.8E-84 632.2 32.5 341 3-351 20-379 (392)
16 PRK14282 chaperone protein Dna 100.0 7.7E-79 1.7E-83 626.4 34.3 338 3-352 15-365 (369)
17 PRK14285 chaperone protein Dna 100.0 6E-79 1.3E-83 625.9 32.8 334 3-353 14-356 (365)
18 PRK14301 chaperone protein Dna 100.0 3.3E-78 7.1E-83 622.1 32.1 332 3-351 15-351 (373)
19 PRK14295 chaperone protein Dna 100.0 8.1E-78 1.8E-82 621.9 33.8 339 3-351 20-373 (389)
20 PRK14294 chaperone protein Dna 100.0 2.3E-77 4.9E-82 615.0 32.6 333 3-351 15-351 (366)
21 PRK10767 chaperone protein Dna 100.0 6.3E-77 1.4E-81 613.1 34.5 330 3-350 15-348 (371)
22 TIGR02349 DnaJ_bact chaperone 100.0 6.3E-77 1.4E-81 609.9 32.8 337 3-350 11-353 (354)
23 PRK14289 chaperone protein Dna 100.0 1.6E-76 3.4E-81 612.9 35.0 345 3-350 16-364 (386)
24 PRK14300 chaperone protein Dna 100.0 1.2E-76 2.5E-81 610.7 33.8 335 3-350 14-352 (372)
25 PRK14291 chaperone protein Dna 100.0 1.1E-76 2.3E-81 612.8 32.7 345 3-354 14-374 (382)
26 PRK14283 chaperone protein Dna 100.0 1.5E-76 3.4E-81 611.2 33.6 341 3-350 16-356 (378)
27 PRK14292 chaperone protein Dna 100.0 5E-76 1.1E-80 606.4 35.6 335 3-350 13-348 (371)
28 PRK14293 chaperone protein Dna 100.0 1E-75 2.2E-80 604.2 31.7 342 3-351 14-355 (374)
29 PRK14290 chaperone protein Dna 100.0 6E-75 1.3E-79 596.8 33.6 340 3-353 14-359 (365)
30 KOG0712 Molecular chaperone (D 100.0 5.2E-71 1.1E-75 549.0 21.9 317 2-347 14-336 (337)
31 PRK14299 chaperone protein Dna 100.0 1.9E-59 4.1E-64 468.3 25.4 264 3-351 15-287 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.7E-57 3.6E-62 457.4 26.8 275 3-351 15-294 (306)
33 KOG0715 Molecular chaperone (D 100.0 7.3E-43 1.6E-47 346.9 11.9 234 4-275 55-288 (288)
34 KOG0713 Molecular chaperone (D 100.0 1.9E-42 4.2E-47 340.7 9.1 298 4-338 28-328 (336)
35 TIGR03835 termin_org_DnaJ term 100.0 2.6E-31 5.6E-36 283.9 18.1 161 112-335 656-817 (871)
36 KOG0714 Molecular chaperone (D 99.9 4.7E-22 1E-26 196.2 15.6 251 4-314 15-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.9 1.5E-21 3.3E-26 159.0 8.3 80 264-343 1-81 (81)
38 PTZ00341 Ring-infected erythro 99.7 2.9E-17 6.4E-22 180.3 4.8 61 3-63 584-644 (1136)
39 COG2214 CbpA DnaJ-class molecu 99.7 5.6E-16 1.2E-20 146.1 11.7 56 2-57 16-73 (237)
40 KOG0716 Molecular chaperone (D 99.7 4.6E-17 9.9E-22 156.7 4.2 59 4-62 43-102 (279)
41 KOG0691 Molecular chaperone (D 99.6 5.3E-17 1.1E-21 161.0 3.2 77 3-87 16-93 (296)
42 KOG0717 Molecular chaperone (D 99.6 2.3E-16 5E-21 160.9 3.9 61 4-64 20-82 (508)
43 KOG0718 Molecular chaperone (D 99.6 9E-16 2E-20 156.6 4.6 59 4-62 21-83 (546)
44 PHA03102 Small T antigen; Revi 99.6 3.3E-15 7.1E-20 135.1 5.0 71 5-87 20-90 (153)
45 KOG0719 Molecular chaperone (D 99.5 5.3E-15 1.2E-19 139.3 4.1 56 4-59 26-84 (264)
46 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 1.7E-14 3.8E-19 112.9 6.1 65 142-206 1-66 (66)
47 TIGR03835 termin_org_DnaJ term 99.5 1.2E-14 2.5E-19 156.9 4.6 60 3-62 13-72 (871)
48 COG0484 DnaJ DnaJ-class molecu 99.5 3.9E-14 8.4E-19 144.0 8.1 119 138-268 158-346 (371)
49 PF00226 DnaJ: DnaJ domain; I 99.5 1.7E-14 3.8E-19 111.7 4.1 52 3-54 11-64 (64)
50 KOG0624 dsRNA-activated protei 99.5 4.3E-14 9.4E-19 140.3 7.6 59 4-63 406-468 (504)
51 PRK14282 chaperone protein Dna 99.4 2.2E-13 4.7E-18 140.9 7.6 67 203-269 292-360 (369)
52 PRK14290 chaperone protein Dna 99.4 3.2E-13 6.9E-18 139.5 7.7 119 139-269 165-353 (365)
53 PRK14298 chaperone protein Dna 99.4 4.4E-13 9.5E-18 138.9 6.9 67 203-269 281-348 (377)
54 PRK14294 chaperone protein Dna 99.4 6.9E-13 1.5E-17 137.0 6.9 68 203-270 280-348 (366)
55 PRK10767 chaperone protein Dna 99.3 1.3E-12 2.9E-17 135.2 7.5 68 203-270 278-346 (371)
56 PRK14285 chaperone protein Dna 99.3 1.9E-12 4.1E-17 133.7 8.3 67 203-269 282-350 (365)
57 smart00271 DnaJ DnaJ molecular 99.3 1.9E-12 4.1E-17 98.7 5.4 46 4-49 13-60 (60)
58 KOG0550 Molecular chaperone (D 99.3 1.5E-12 3.3E-17 132.0 6.0 77 2-84 383-461 (486)
59 PRK14300 chaperone protein Dna 99.3 4.9E-12 1.1E-16 131.0 8.6 63 203-265 281-345 (372)
60 PRK14301 chaperone protein Dna 99.3 3.8E-12 8.3E-17 131.8 7.7 66 203-268 280-346 (373)
61 PRK14284 chaperone protein Dna 99.3 4.6E-12 1E-16 132.0 7.8 66 203-268 294-362 (391)
62 PRK14287 chaperone protein Dna 99.3 5E-12 1.1E-16 130.8 8.0 67 203-269 278-345 (371)
63 PRK14278 chaperone protein Dna 99.3 6.4E-12 1.4E-16 130.4 8.6 61 203-263 279-341 (378)
64 TIGR02349 DnaJ_bact chaperone 99.3 5.8E-12 1.3E-16 129.7 7.8 55 212-266 293-347 (354)
65 cd06257 DnaJ DnaJ domain or J- 99.3 5.6E-12 1.2E-16 94.3 5.4 44 3-46 11-55 (55)
66 PRK14276 chaperone protein Dna 99.3 9.1E-12 2E-16 129.4 8.2 62 203-264 286-348 (380)
67 PRK14288 chaperone protein Dna 99.3 1.3E-11 2.9E-16 127.6 8.8 116 138-265 155-338 (369)
68 PRK14281 chaperone protein Dna 99.2 1.1E-11 2.4E-16 129.4 8.1 113 139-263 179-363 (397)
69 PRK14286 chaperone protein Dna 99.2 1.3E-11 2.8E-16 127.9 8.2 64 203-266 286-351 (372)
70 PRK14293 chaperone protein Dna 99.2 1.2E-11 2.6E-16 128.2 7.8 68 202-269 282-351 (374)
71 PRK14280 chaperone protein Dna 99.2 1.4E-11 3E-16 127.8 8.2 62 203-264 283-345 (376)
72 PRK14279 chaperone protein Dna 99.2 1.5E-11 3.4E-16 128.1 8.4 112 139-263 190-369 (392)
73 KOG0721 Molecular chaperone (D 99.2 9.6E-12 2.1E-16 116.6 5.3 60 2-61 109-169 (230)
74 PRK14297 chaperone protein Dna 99.2 2.3E-11 4.9E-16 126.4 8.2 61 203-263 288-349 (380)
75 PRK14296 chaperone protein Dna 99.2 3.1E-11 6.7E-16 125.0 8.6 62 203-264 290-353 (372)
76 PRK14289 chaperone protein Dna 99.2 2.6E-11 5.5E-16 126.3 7.8 59 203-261 294-353 (386)
77 PRK14277 chaperone protein Dna 99.2 3E-11 6.4E-16 125.8 8.2 62 203-264 295-357 (386)
78 PRK14292 chaperone protein Dna 99.2 3.7E-11 8.1E-16 124.5 7.8 65 203-267 278-343 (371)
79 PRK14295 chaperone protein Dna 99.2 4.4E-11 9.6E-16 124.5 8.4 114 139-265 183-365 (389)
80 KOG0722 Molecular chaperone (D 99.2 1.2E-11 2.6E-16 118.0 3.2 53 4-56 45-97 (329)
81 PRK14283 chaperone protein Dna 99.2 5.9E-11 1.3E-15 123.3 8.5 63 203-265 286-349 (378)
82 PRK05014 hscB co-chaperone Hsc 99.2 3.3E-11 7.2E-16 111.7 5.2 53 3-55 14-72 (171)
83 PTZ00037 DnaJ_C chaperone prot 99.1 8.7E-11 1.9E-15 123.2 8.3 58 202-259 289-353 (421)
84 PRK00294 hscB co-chaperone Hsc 99.1 4.1E-11 8.8E-16 111.1 5.0 54 2-55 16-75 (173)
85 TIGR00714 hscB Fe-S protein as 99.1 4.9E-11 1.1E-15 109.1 5.1 53 4-56 3-61 (157)
86 PRK01356 hscB co-chaperone Hsc 99.1 4.6E-11 9.9E-16 110.2 4.8 53 3-55 15-71 (166)
87 PRK14291 chaperone protein Dna 99.1 2.4E-10 5.3E-15 118.8 10.4 54 203-256 291-346 (382)
88 PRK03578 hscB co-chaperone Hsc 99.1 1E-10 2.3E-15 108.8 5.1 53 3-55 19-77 (176)
89 KOG0720 Molecular chaperone (D 98.9 4.7E-10 1E-14 115.3 3.3 53 4-56 247-299 (490)
90 PHA02624 large T antigen; Prov 98.9 1.1E-09 2.4E-14 117.7 4.7 47 5-54 26-72 (647)
91 PTZ00100 DnaJ chaperone protei 98.8 3E-09 6.5E-14 91.8 4.7 40 3-45 76-115 (116)
92 PRK14299 chaperone protein Dna 98.8 9.5E-09 2.1E-13 103.2 8.9 72 258-337 125-197 (291)
93 PLN03165 chaperone protein dna 98.8 8.6E-09 1.9E-13 88.3 6.2 61 138-210 40-100 (111)
94 PF01556 CTDII: DnaJ C termina 98.8 5.3E-09 1.1E-13 85.1 3.4 49 212-260 27-76 (81)
95 PRK10266 curved DNA-binding pr 98.6 1.2E-07 2.5E-12 96.0 8.7 74 260-335 115-202 (306)
96 COG5407 SEC63 Preprotein trans 98.5 6.8E-08 1.5E-12 99.1 2.9 58 4-61 110-173 (610)
97 KOG1789 Endocytosis protein RM 98.5 1.1E-07 2.5E-12 105.1 4.7 39 5-45 1298-1336(2235)
98 KOG0712 Molecular chaperone (D 98.4 7.2E-07 1.6E-11 90.2 7.4 56 200-256 265-324 (337)
99 PRK01773 hscB co-chaperone Hsc 98.4 4E-07 8.7E-12 84.6 4.7 52 2-53 14-71 (173)
100 COG5269 ZUO1 Ribosome-associat 98.2 1.1E-06 2.4E-11 85.1 4.1 54 3-56 57-113 (379)
101 TIGR02642 phage_xxxx uncharact 98.1 1.8E-06 3.9E-11 80.8 4.2 50 181-231 98-149 (186)
102 COG1107 Archaea-specific RecJ- 97.5 6.3E-05 1.4E-09 80.0 3.7 70 140-210 3-82 (715)
103 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.4 7.4E-05 1.6E-09 58.4 2.3 43 139-192 15-66 (66)
104 KOG1150 Predicted molecular ch 97.4 0.00014 3.1E-09 67.9 3.7 49 4-52 65-115 (250)
105 KOG0568 Molecular chaperone (D 97.4 0.00022 4.7E-09 68.0 4.6 44 4-47 59-103 (342)
106 COG1107 Archaea-specific RecJ- 96.8 0.0012 2.5E-08 70.7 4.6 48 138-196 17-82 (715)
107 PLN03165 chaperone protein dna 96.6 0.0018 3.8E-08 55.8 3.0 41 141-196 54-100 (111)
108 KOG2813 Predicted molecular ch 96.0 0.0063 1.4E-07 60.7 3.7 30 184-216 247-276 (406)
109 TIGR02642 phage_xxxx uncharact 95.7 0.0085 1.8E-07 56.3 3.1 30 139-169 99-128 (186)
110 COG1076 DjlA DnaJ-domain-conta 95.6 0.0069 1.5E-07 56.4 2.2 49 7-55 18-72 (174)
111 KOG0723 Molecular chaperone (D 94.8 0.044 9.5E-07 46.5 4.4 41 4-47 68-108 (112)
112 KOG2813 Predicted molecular ch 94.7 0.016 3.5E-07 57.9 1.9 59 139-209 198-258 (406)
113 KOG3192 Mitochondrial J-type c 94.3 0.033 7.2E-07 50.4 2.8 49 6-54 24-78 (168)
114 KOG0724 Zuotin and related mol 93.9 0.052 1.1E-06 55.6 3.7 56 1-56 1-61 (335)
115 KOG0715 Molecular chaperone (D 87.3 0.29 6.2E-06 49.4 1.5 58 126-196 169-231 (288)
116 KOG2824 Glutaredoxin-related p 82.6 1.3 2.8E-05 44.0 3.5 45 140-194 230-274 (281)
117 TIGR00340 zpr1_rel ZPR1-relate 81.0 8.4 0.00018 35.6 8.1 26 280-309 72-98 (163)
118 PRK14714 DNA polymerase II lar 80.0 1.2 2.6E-05 52.5 2.6 66 122-206 643-719 (1337)
119 KOG2824 Glutaredoxin-related p 79.1 2.1 4.5E-05 42.5 3.6 38 157-209 230-275 (281)
120 cd03031 GRX_GRX_like Glutaredo 79.0 2.1 4.5E-05 38.9 3.4 25 140-170 100-124 (147)
121 smart00709 Zpr1 Duplicated dom 73.7 12 0.00027 34.4 7.0 26 280-309 75-100 (160)
122 PF07709 SRR: Seven Residue Re 73.2 1.8 4E-05 23.3 0.9 13 33-45 2-14 (14)
123 TIGR00630 uvra excinuclease AB 71.4 2.9 6.2E-05 48.8 2.7 19 330-348 855-874 (924)
124 PRK04023 DNA polymerase II lar 70.1 2.1 4.6E-05 49.4 1.3 64 122-206 609-673 (1121)
125 COG1198 PriA Primosomal protei 67.0 3.7 8E-05 46.5 2.4 51 138-205 434-484 (730)
126 TIGR00630 uvra excinuclease AB 66.8 3 6.4E-05 48.7 1.7 28 184-211 738-774 (924)
127 TIGR00310 ZPR1_znf ZPR1 zinc f 65.8 25 0.00055 33.3 7.4 36 158-193 2-41 (192)
128 PRK00349 uvrA excinuclease ABC 61.6 6 0.00013 46.3 2.8 20 330-349 857-877 (943)
129 smart00709 Zpr1 Duplicated dom 61.6 31 0.00067 31.7 7.0 36 158-193 2-40 (160)
130 cd03031 GRX_GRX_like Glutaredo 58.1 9.8 0.00021 34.5 3.1 38 156-208 99-145 (147)
131 TIGR03655 anti_R_Lar restricti 57.9 15 0.00032 27.2 3.5 14 157-170 2-15 (53)
132 PF11181 YflT: Heat induced st 56.8 7.5 0.00016 32.8 2.0 27 386-412 54-82 (103)
133 PF03589 Antiterm: Antitermina 56.1 3.5 7.6E-05 34.6 -0.2 38 157-194 6-44 (95)
134 PRK05580 primosome assembly pr 55.9 11 0.00024 42.5 3.7 60 129-205 366-430 (679)
135 PRK00349 uvrA excinuclease ABC 54.5 9.4 0.0002 44.7 2.9 28 184-211 740-776 (943)
136 PRK14559 putative protein seri 53.6 7.5 0.00016 43.6 1.8 49 140-205 2-50 (645)
137 PF04246 RseC_MucC: Positive r 53.3 22 0.00048 31.3 4.5 22 212-233 42-63 (135)
138 PF12434 Malate_DH: Malate deh 53.0 14 0.0003 23.7 2.2 17 6-22 10-26 (28)
139 COG0178 UvrA Excinuclease ATPa 52.6 12 0.00026 42.8 3.1 27 323-352 845-873 (935)
140 PRK14873 primosome assembly pr 52.6 9.9 0.00022 42.8 2.6 58 129-205 369-431 (665)
141 PRK03564 formate dehydrogenase 52.0 14 0.0003 37.7 3.2 22 183-204 213-234 (309)
142 TIGR00595 priA primosomal prot 49.9 10 0.00022 41.2 2.1 52 138-206 212-263 (505)
143 PRK00635 excinuclease ABC subu 49.1 12 0.00026 46.7 2.7 24 322-348 1721-1745(1809)
144 PF03833 PolC_DP2: DNA polymer 48.9 5.7 0.00012 45.2 0.0 63 123-206 638-702 (900)
145 PRK05978 hypothetical protein; 48.2 8.7 0.00019 34.9 1.1 24 158-188 35-58 (148)
146 TIGR00310 ZPR1_znf ZPR1 zinc f 46.1 1.2E+02 0.0026 28.8 8.4 26 280-309 74-100 (192)
147 PF09538 FYDLN_acid: Protein o 45.2 11 0.00025 32.3 1.3 25 139-163 9-33 (108)
148 PRK00564 hypA hydrogenase nick 44.4 55 0.0012 28.4 5.5 39 128-166 59-98 (117)
149 PF07092 DUF1356: Protein of u 43.7 12 0.00027 36.5 1.4 14 157-170 39-52 (238)
150 PF07092 DUF1356: Protein of u 39.2 12 0.00026 36.7 0.5 15 139-153 38-52 (238)
151 PRK12336 translation initiatio 39.1 88 0.0019 29.8 6.4 11 36-46 6-16 (201)
152 PF08792 A2L_zn_ribbon: A2L zi 37.0 23 0.0005 23.8 1.5 12 157-168 4-15 (33)
153 TIGR01562 FdhE formate dehydro 36.9 32 0.00069 35.0 3.2 22 183-204 211-232 (305)
154 PRK00635 excinuclease ABC subu 36.6 16 0.00035 45.6 1.2 28 184-211 1609-1645(1809)
155 TIGR02300 FYDLN_acid conserved 35.7 21 0.00046 31.5 1.5 26 139-164 9-34 (129)
156 COG0178 UvrA Excinuclease ATPa 35.0 30 0.00066 39.7 2.9 32 183-216 731-771 (935)
157 PF07191 zinc-ribbons_6: zinc- 34.5 47 0.001 26.3 3.1 50 141-204 3-58 (70)
158 cd02639 R3H_RRM R3H domain of 34.5 52 0.0011 25.2 3.3 28 327-354 17-44 (60)
159 PF06975 DUF1299: Protein of u 34.2 14 0.0003 26.1 0.1 11 38-48 10-20 (47)
160 PF03367 zf-ZPR1: ZPR1 zinc-fi 34.0 43 0.00093 30.8 3.3 33 157-189 2-37 (161)
161 PRK12380 hydrogenase nickel in 33.0 45 0.00098 28.7 3.1 22 128-149 58-80 (113)
162 PRK13798 putative OHCU decarbo 33.0 95 0.0021 28.7 5.4 27 16-42 66-109 (166)
163 PF07295 DUF1451: Protein of u 32.1 36 0.00079 30.8 2.4 12 183-194 131-142 (146)
164 PF12991 DUF3875: Domain of un 31.9 48 0.001 24.9 2.6 23 320-342 26-50 (54)
165 PRK14051 negative regulator Gr 30.6 1.5E+02 0.0032 25.5 5.6 71 244-314 48-119 (123)
166 smart00440 ZnF_C2C2 C2C2 Zinc 30.6 75 0.0016 22.1 3.3 32 158-189 2-35 (40)
167 KOG0724 Zuotin and related mol 30.1 22 0.00049 36.2 0.9 48 6-56 39-86 (335)
168 KOG3415 Putative Rab5-interact 29.6 38 0.00082 29.3 2.0 21 423-445 105-125 (129)
169 PRK03681 hypA hydrogenase nick 29.4 59 0.0013 28.1 3.2 20 128-147 58-78 (114)
170 PF09862 DUF2089: Protein of u 29.3 42 0.00091 29.1 2.3 20 185-204 1-20 (113)
171 PF01096 TFIIS_C: Transcriptio 28.8 69 0.0015 22.1 2.9 32 158-189 2-35 (39)
172 PF10080 DUF2318: Predicted me 28.5 1E+02 0.0022 26.2 4.5 22 183-204 36-60 (102)
173 PF05017 TMP: TMP repeat; Int 28.3 25 0.00055 17.7 0.4 10 391-400 1-10 (11)
174 PF09855 DUF2082: Nucleic-acid 27.7 75 0.0016 24.7 3.2 15 159-173 3-17 (64)
175 PF13677 MotB_plug: Membrane M 27.7 46 0.001 25.1 2.0 21 427-447 24-44 (58)
176 COG1241 MCM2 Predicted ATPase 27.7 9.6E+02 0.021 27.4 13.5 15 335-349 258-272 (682)
177 TIGR00757 RNaseEG ribonuclease 27.4 37 0.0008 36.1 1.9 14 183-196 391-404 (414)
178 PRK12336 translation initiatio 26.9 2.3E+02 0.0051 26.9 7.1 13 137-149 96-108 (201)
179 PF14687 DUF4460: Domain of un 26.5 1.1E+02 0.0023 26.5 4.2 42 6-47 8-54 (112)
180 PF11833 DUF3353: Protein of u 25.9 92 0.002 29.6 4.1 36 4-46 4-40 (194)
181 cd06007 R3H_DEXH_helicase R3H 24.9 88 0.0019 23.8 3.1 28 327-354 16-43 (59)
182 COG3071 HemY Uncharacterized e 24.9 38 0.00082 35.6 1.4 33 426-458 47-83 (400)
183 TIGR00100 hypA hydrogenase nic 24.6 86 0.0019 27.1 3.4 18 129-146 59-77 (115)
184 PF03869 Arc: Arc-like DNA bin 24.6 78 0.0017 23.2 2.6 24 2-25 8-31 (50)
185 COG3128 PiuC Uncharacterized i 24.4 2.4E+02 0.0051 26.9 6.3 85 260-349 113-197 (229)
186 PF08774 VRR_NUC: VRR-NUC doma 24.2 99 0.0021 25.4 3.6 41 310-350 46-89 (100)
187 TIGR03180 UraD_2 OHCU decarbox 24.1 1.7E+02 0.0037 26.8 5.4 10 16-25 56-65 (158)
188 PF01104 Bunya_NS-S: Bunyaviru 23.7 24 0.00052 29.4 -0.2 17 443-459 37-53 (91)
189 PF01155 HypA: Hydrogenase exp 23.5 48 0.001 28.5 1.6 37 129-166 59-96 (113)
190 PF14353 CpXC: CpXC protein 23.4 67 0.0015 27.9 2.5 13 157-169 2-14 (128)
191 PRK14890 putative Zn-ribbon RN 23.3 70 0.0015 24.5 2.2 22 141-162 9-31 (59)
192 PF05934 MCLC: Mid-1-related c 23.3 1.3E+02 0.0027 32.8 4.9 57 370-458 153-210 (549)
193 PF14803 Nudix_N_2: Nudix N-te 22.2 60 0.0013 22.0 1.5 28 158-189 2-29 (34)
194 cd02641 R3H_Smubp-2_like R3H d 21.8 1E+02 0.0022 23.4 2.9 26 329-354 19-44 (60)
195 COG5349 Uncharacterized protei 21.6 28 0.00061 30.5 -0.2 9 247-255 61-69 (126)
196 cd02640 R3H_NRF R3H domain of 21.2 1.1E+02 0.0024 23.3 3.0 27 328-354 18-44 (60)
197 PF13453 zf-TFIIB: Transcripti 21.1 59 0.0013 22.5 1.4 8 183-190 20-27 (41)
198 COG2260 Predicted Zn-ribbon RN 21.1 66 0.0014 24.6 1.7 7 183-189 18-24 (59)
199 PF08273 Prim_Zn_Ribbon: Zinc- 20.8 66 0.0014 22.6 1.5 10 140-149 4-13 (40)
200 PRK14873 primosome assembly pr 20.5 63 0.0014 36.5 2.2 23 141-163 394-417 (665)
201 COG3058 FdhE Uncharacterized p 20.4 12 0.00025 37.4 -3.2 62 131-204 177-260 (308)
202 PRK05580 primosome assembly pr 20.4 55 0.0012 37.0 1.7 40 140-192 391-431 (679)
203 PF13719 zinc_ribbon_5: zinc-r 20.3 52 0.0011 22.4 0.9 7 183-189 26-32 (37)
204 smart00276 GLECT Galectin. Gal 20.1 1.4E+02 0.0031 25.8 3.9 42 293-334 3-49 (128)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-97 Score=749.39 Aligned_cols=334 Identities=40% Similarity=0.671 Sum_probs=307.1
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCC-CCCCCCCCccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-SNTSQGVDPFELY 81 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~-~~~~~~~d~~d~F 81 (461)
||+++||+|||+||+|||||+|| +++|++|||||+|||||||||+||++||+||++++++++.++ ++++.+.|+.|||
T Consensus 16 As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~fgg~~~DIF 95 (371)
T COG0484 16 ASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIF 95 (371)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCCCCCCHHHHH
Confidence 79999999999999999999999 899999999999999999999999999999999997433222 1222222688999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541 82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA 161 (461)
Q Consensus 82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~ 161 (461)
++|||+. +++ ..+++++.+|.|+.+.|+|||+|||+|++++|.+.+...|++|+|+|++.++.+.+|++
T Consensus 96 ~~~FgGg--~~~---------~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~t 164 (371)
T COG0484 96 EDFFGGG--GGG---------RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPT 164 (371)
T ss_pred HHhhcCC--Ccc---------cCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCC
Confidence 9999631 111 11234478999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541 162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS 241 (461)
Q Consensus 162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~ 241 (461)
|+|+|++...+++ |.|+++++|+.|+|+|++|+++|..|+|.|++...++++|+||+|+.+|++|++.|+|+++.+++
T Consensus 165 C~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Gg 242 (371)
T COG0484 165 CNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGG 242 (371)
T ss_pred CCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCC
Confidence 9999999988888 88999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541 242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR 321 (461)
Q Consensus 242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r 321 (461)
++|||||+|.|++|+.|+|+|+|||++++|++.+|+||++|+||||||.++|+||+|||+|++++|+|+|||..++ ..+
T Consensus 243 p~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~-~~~ 321 (371)
T COG0484 243 PAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRS-GGR 321 (371)
T ss_pred CCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 467
Q ss_pred ccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 322 GDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
|||||+++|++|++|+.+|++||++|++..
T Consensus 322 GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 322 GDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999976
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-84 Score=666.72 Aligned_cols=335 Identities=29% Similarity=0.551 Sum_probs=295.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccccc-CCCCCC---------
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLSNTS--------- 72 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~-~~~~~~--------- 72 (461)
-+++++||+|||+||+|||||+|++++|+++|++|++||||||||+||++||+||++++.++.+ ++++++
T Consensus 15 ~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (372)
T PRK14296 15 TASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMG 94 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCcccccccccc
Confidence 4789999999999999999999998899999999999999999999999999999987753211 001000
Q ss_pred -CCC-CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCc
Q 012541 73 -QGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA 150 (461)
Q Consensus 73 -~~~-d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~ 150 (461)
.++ ++.|+|++|||+. + + ...++.++.|+++.|.|||+|+|+|++++|.+.+.+.|++|+|+|.
T Consensus 95 ~~g~~~f~d~f~~~fggg-------~---~----~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~ 160 (372)
T PRK14296 95 SSGFSSFTNIFSDFFGSN-------K---S----DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGA 160 (372)
T ss_pred ccccccchhhhhhhcCCC-------c---c----CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCcc
Confidence 011 2235666666421 0 0 1122457899999999999999999999999999999999999999
Q ss_pred ccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEE
Q 012541 151 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 230 (461)
Q Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l 230 (461)
..+..+.+|+.|+|+|.++..++.++.+++++++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|
T Consensus 161 ~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 240 (372)
T PRK14296 161 ESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKL 240 (372)
T ss_pred CCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEE
Confidence 99999999999999999988887776666677899999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccEEEEEEEEeccccccc-ccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEcc
Q 012541 231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRD-GLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQ 309 (461)
Q Consensus 231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~-G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g 309 (461)
+|+|+++.+++.+|||||+|++++|+.|+|+ |+|||++++|||.|||||+++.|+||||++.|+||++++||++++|+|
T Consensus 241 ~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~ri~G 320 (372)
T PRK14296 241 SQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINN 320 (372)
T ss_pred eccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEEEcC
Confidence 9999998777889999999999999999995 899999999999999999999999999998999999999999999999
Q ss_pred CCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 310 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 310 ~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
+|||...+++.+|||||+|+|+||+.||++|+++|++|++..
T Consensus 321 kGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~ 362 (372)
T PRK14296 321 KGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT 362 (372)
T ss_pred CCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999966555678999999999999999999999999999863
No 3
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-82 Score=650.57 Aligned_cols=334 Identities=33% Similarity=0.676 Sum_probs=300.5
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCC-CCccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG-VDPFELY 81 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~-~d~~d~F 81 (461)
-++.++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++.+++++++ +.+ .++.|+|
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~--~~~f~~~~d~f 92 (371)
T PRK14287 15 NASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGG--AGDFGGFSDIF 92 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCC--CccccchHHHH
Confidence 3688999999999999999999998889999999999999999999999999999988764321111 111 1345889
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541 82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA 161 (461)
Q Consensus 82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~ 161 (461)
++|||+. + + .. ....+.++.|+++.|.|||+|+|+|++++|.+.+.+.|+.|+|+|......+.+|+.
T Consensus 93 ~~~fgg~-~--~----~~-----~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 160 (371)
T PRK14287 93 DMFFGGG-G--G----RR-----NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSH 160 (371)
T ss_pred Hhhhccc-c--C----CC-----CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCC
Confidence 9998641 0 0 00 011235789999999999999999999999999999999999999998888999999
Q ss_pred cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541 162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS 241 (461)
Q Consensus 162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~ 241 (461)
|+|+|+++..+++++|++++.++|+.|+|+|+++...|..|+|.+++.+.++++|.||+|+.+|++|+|+|+|+++..++
T Consensus 161 C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~ 240 (371)
T PRK14287 161 CGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGG 240 (371)
T ss_pred CCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999987677
Q ss_pred CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541 242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR 321 (461)
Q Consensus 242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r 321 (461)
.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||++.|+||+++++|++++|+|+|||..++ ..+
T Consensus 241 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~ 319 (371)
T PRK14287 241 PPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHG-RGQ 319 (371)
T ss_pred CCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCC-CCC
Confidence 8999999999999999999999999999999999999999999999999899999999999999999999997654 368
Q ss_pred ccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 322 GDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus 320 GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 349 (371)
T PRK14287 320 GDQHVQVRVVTPKNLTEKEKELMREFAGMS 349 (371)
T ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999653
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-82 Score=650.84 Aligned_cols=335 Identities=36% Similarity=0.649 Sum_probs=300.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCC-CCCCCC-CCcccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-SNTSQG-VDPFEL 80 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~-~~~~~~-~d~~d~ 80 (461)
-++.++|++|||+||++||||+|++++|+++|++|++||||||||+||++||+||+++++++++++ +.++.+ .++.|+
T Consensus 16 ~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~d~ 95 (377)
T PRK14298 16 DASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDI 95 (377)
T ss_pred CCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccCCcCcchhh
Confidence 368899999999999999999999888999999999999999999999999999998876432211 001111 234578
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCC
Q 012541 81 YSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCK 160 (461)
Q Consensus 81 F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~ 160 (461)
|++|||+. + + . ....+.++.|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+..+.+|+
T Consensus 96 f~~~Fgg~-~-----~-~------~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 162 (377)
T PRK14298 96 FEMFFGGG-G-----R-R------GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCP 162 (377)
T ss_pred hHhhhcCC-C-----c-c------CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCC
Confidence 88888641 0 0 0 01224578999999999999999999999999999999999999999999999999
Q ss_pred CcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCC
Q 012541 161 ACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR 240 (461)
Q Consensus 161 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g 240 (461)
.|+|+|+++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|+++..+
T Consensus 163 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~ 242 (377)
T PRK14298 163 TCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPG 242 (377)
T ss_pred CCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCC
Confidence 99999999988889999998889999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCC
Q 012541 241 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSV 320 (461)
Q Consensus 241 ~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~ 320 (461)
+.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||++.|+||+++++|++++|+|+|||..+. ..
T Consensus 243 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~-~~ 321 (377)
T PRK14298 243 APSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHG-HG 321 (377)
T ss_pred CCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCC-CC
Confidence 88999999999999999999999999999999999999999999999999899999999999999999999997653 46
Q ss_pred CccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 321 RGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 321 rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
+|||||+|+|.+|+.|+.+++++|++|+++.
T Consensus 322 ~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~ 352 (377)
T PRK14298 322 KGDQLVKVIVKTPTKLTQEQKELLREFDELS 352 (377)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999754
No 5
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-81 Score=649.25 Aligned_cols=335 Identities=34% Similarity=0.662 Sum_probs=300.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCC----CC-C
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTS----QG-V 75 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~----~~-~ 75 (461)
-++.++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++++++++ ++.++ .+ .
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (380)
T PRK14276 15 DASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFG 94 (380)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCCcccccccc
Confidence 37899999999999999999999988999999999999999999999999999999988643211 01010 01 2
Q ss_pred CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccc
Q 012541 76 DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNC 155 (461)
Q Consensus 76 d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~ 155 (461)
++.|+|++|||+. + + . . ....+.++.|+.+.|.|||||+|+|+++++.+.+.+.|++|+|+|+..+..
T Consensus 95 ~~~d~f~~~fgg~----~--~---~-~--~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~ 162 (380)
T PRK14276 95 GFEDIFSSFFGGG----G--A---R-R--NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS 162 (380)
T ss_pred chhhHHHHHhCcc----c--c---c-c--CcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCC
Confidence 4557888888641 0 0 0 0 012245789999999999999999999999999999999999999999888
Q ss_pred cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccccc
Q 012541 156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN 235 (461)
Q Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~ 235 (461)
+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~ 242 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGE 242 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecccc
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCC
Q 012541 236 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI 315 (461)
Q Consensus 236 ~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~ 315 (461)
+...+..+|||||+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+|+||++.|+||+++++|++++|+|+|||..
T Consensus 243 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~ 322 (380)
T PRK14276 243 AGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKL 322 (380)
T ss_pred CCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCC
Confidence 98766788999999999999999999999999999999999999999999999998999999999999999999999976
Q ss_pred CCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 316 ~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 323 ~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 323 RG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA 356 (380)
T ss_pred CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 53 46899999999999999999999999999864
No 6
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-81 Score=645.90 Aligned_cols=337 Identities=32% Similarity=0.541 Sum_probs=298.0
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS 82 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~ 82 (461)
-+++++|++|||+||+|||||+|++++|+++|++|++||||||||+||++||+||++...++..+++++++..++.|+|+
T Consensus 14 ~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f~~~~d~f~ 93 (378)
T PRK14278 14 NASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFGGLGDVFE 93 (378)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCcCchhHHHH
Confidence 47899999999999999999999988899999999999999999999999999998743321111111101123457899
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541 83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC 162 (461)
Q Consensus 83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C 162 (461)
+|||+. ++ + . ..+..+.++.|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|.+.+..+.+|+.|
T Consensus 94 ~ffgg~----g~-~-~-----~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C 162 (378)
T PRK14278 94 AFFGGG----AA-S-R-----GPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTC 162 (378)
T ss_pred HHhCCC----CC-C-C-----CCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCc
Confidence 998642 10 0 0 01112457899999999999999999999999999999999999999999889999999
Q ss_pred CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541 163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL 242 (461)
Q Consensus 163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~ 242 (461)
+|+|+++..+++.+|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|++++.++.
T Consensus 163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 242 (378)
T PRK14278 163 GGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGP 242 (378)
T ss_pred cCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCC
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999877778
Q ss_pred CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeee-CCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541 243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETV-EGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR 321 (461)
Q Consensus 243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tl-dG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r 321 (461)
+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+|| +|.+.|+||+++++|++++|+|+|||..+. ..+
T Consensus 243 ~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~-~~~ 321 (378)
T PRK14278 243 AGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRS-GGR 321 (378)
T ss_pred CCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCC-CCC
Confidence 899999999999999999999999999999999999999999999 556799999999999999999999997653 468
Q ss_pred ccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 322 GDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
|||||+|+|.||+.||++|+++|++|+...
T Consensus 322 GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~ 351 (378)
T PRK14278 322 GDLHAHVEVVVPTRLDHEDIELLRELKALR 351 (378)
T ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999753
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-81 Score=645.30 Aligned_cols=336 Identities=38% Similarity=0.694 Sum_probs=301.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCC---C-CCCCcc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT---S-QGVDPF 78 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~---~-~~~d~~ 78 (461)
-+++++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++++++++++.+ . +++++.
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (376)
T PRK14280 15 SASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGFGFE 94 (376)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCCccccccch
Confidence 478999999999999999999999889999999999999999999999999999998876432211101 0 122556
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541 79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS 158 (461)
Q Consensus 79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~ 158 (461)
|+|++|||+. +.+ . ....+.++.|+.+.|.|||||+|+|++++|.+.+.+.|+.|+|+|...+..+.+
T Consensus 95 d~f~~~fgg~--~~~--------~--~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 162 (376)
T PRK14280 95 DIFSSFFGGG--GRR--------R--DPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKET 162 (376)
T ss_pred hhHHHHhCCc--ccc--------C--cccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCcc
Confidence 8899998631 000 0 012245789999999999999999999999999999999999999999888999
Q ss_pred CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541 159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 238 (461)
Q Consensus 159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~ 238 (461)
|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|++..
T Consensus 163 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~ 242 (376)
T PRK14280 163 CSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV 242 (376)
T ss_pred CCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC
Confidence 99999999999888999999999899999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541 239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP 318 (461)
Q Consensus 239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~ 318 (461)
.++.+|||||+|+|++|+.|+|+|+||++++.|||.|||+|+++.|+||||++.|+||+++++|++++|+|+|||....
T Consensus 243 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~- 321 (376)
T PRK14280 243 NGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRG- 321 (376)
T ss_pred CCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCC-
Confidence 7778999999999999999999999999999999999999999999999998899999999999999999999997643
Q ss_pred CCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
..+|||||+|+|.+|+.||++|+++|++|+++.
T Consensus 322 ~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~ 354 (376)
T PRK14280 322 YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS 354 (376)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 468999999999999999999999999998653
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.2e-81 Score=643.93 Aligned_cols=339 Identities=36% Similarity=0.687 Sum_probs=299.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccc-cCCC---CC--CCC-
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY-DGLS---NT--SQG- 74 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~-~~~~---~~--~~~- 74 (461)
-++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||+.||+||+++++.+. ++++ ++ .++
T Consensus 16 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~g~~~~~~ 95 (386)
T PRK14277 16 NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGF 95 (386)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCCCCccccCc
Confidence 478899999999999999999998 578999999999999999999999999999998876321 1100 01 000
Q ss_pred ----CCcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCc
Q 012541 75 ----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA 150 (461)
Q Consensus 75 ----~d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~ 150 (461)
.++.|+|++||++. |++++ . .....+.+++|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|.
T Consensus 96 ~~~~~~~~d~f~~~F~~~---fgg~~---~---~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~ 166 (386)
T PRK14277 96 DFDFGGFGDIFEDIFGDF---FGTGR---R---RAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGA 166 (386)
T ss_pred cccccchhHHHHHhhccc---ccCCC---c---CCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCc
Confidence 12336788888642 32111 0 01122457899999999999999999999999999999999999999
Q ss_pred ccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEE
Q 012541 151 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 230 (461)
Q Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l 230 (461)
.....+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|
T Consensus 167 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 246 (386)
T PRK14277 167 KPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITL 246 (386)
T ss_pred CCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEE
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccC
Q 012541 231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQM 310 (461)
Q Consensus 231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~ 310 (461)
+|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+|+
T Consensus 247 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~ 326 (386)
T PRK14277 247 RGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGK 326 (386)
T ss_pred ccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCC
Confidence 99999876667889999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 311 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 311 G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
|||..+. ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 327 G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~ 366 (386)
T PRK14277 327 GIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKLS 366 (386)
T ss_pred CCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence 9997654 368999999999999999999999999999653
No 9
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.5e-81 Score=642.44 Aligned_cols=330 Identities=32% Similarity=0.591 Sum_probs=285.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY 81 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F 81 (461)
-+++++||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||++++.++.+ ++. ...++|+.|
T Consensus 14 ~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~~--~~~~~f~~~ 90 (369)
T PRK14288 14 HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQS--DFSDFFEDL 90 (369)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Ccc--ccccchhhH
Confidence 479999999999999999999998 5789999999999999999999999999999988763211 001 111334333
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541 82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA 161 (461)
Q Consensus 82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~ 161 (461)
++||+.. |++++ .+ ..+.++.+++|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.... .+.+|+.
T Consensus 91 ~~~F~~~---fg~g~-~~----~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~ 161 (369)
T PRK14288 91 GSFFEDA---FGFGA-RG----SKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALETCKQ 161 (369)
T ss_pred HHHHHhh---cCCCC-cc----cCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCcCCCC
Confidence 3444321 21101 00 01123457899999999999999999999999999999999999999876 6789999
Q ss_pred cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541 162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS 241 (461)
Q Consensus 162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~ 241 (461)
|+|+|.+...+ |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|++.. ++
T Consensus 162 C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~-~~ 236 (369)
T PRK14288 162 CNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYE-KG 236 (369)
T ss_pred CCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCC-CC
Confidence 99999876543 77788889999999999999999999999999999999999999999999999999999864 57
Q ss_pred CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCC
Q 012541 242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSV 320 (461)
Q Consensus 242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~ 320 (461)
.+|||||+|+|++|+.|+|+|+|||++++|||.|||||+++.|+||||+ +.|+||++++||++++|+|+|||..+ ...
T Consensus 237 ~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~-~~~ 315 (369)
T PRK14288 237 KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPE-SSY 315 (369)
T ss_pred CCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCC-CCC
Confidence 8999999999999999999999999999999999999999999999996 79999999999999999999999765 346
Q ss_pred CccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 321 RGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 321 rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
+|||||+|+|++|+.|+++|+++|++|++.
T Consensus 316 ~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 316 RGSLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999999999999975
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-81 Score=642.06 Aligned_cols=336 Identities=35% Similarity=0.669 Sum_probs=295.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCC-CC-----C
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS-QG-----V 75 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~-~~-----~ 75 (461)
-++.++||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||+++++++.++.+.++ .+ .
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~~ 94 (372)
T PRK14286 15 SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFG 94 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCccccccccc
Confidence 478999999999999999999998 5789999999999999999999999999999988764321111110 11 2
Q ss_pred CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccc
Q 012541 76 DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNC 155 (461)
Q Consensus 76 d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~ 155 (461)
++.|+|++|||+.+++.. .+ .....+.+++|+++.|.|||||+|+|++++|.+.+.+.|++|+|+|...+..
T Consensus 95 ~~~d~f~~ffgg~~~~~~-----~~---~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~ 166 (372)
T PRK14286 95 DFGDIFGDFFGGGRGGGS-----GG---GRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSS 166 (372)
T ss_pred chhhHHHHhhCCCccCCC-----cc---cccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCC
Confidence 445889999964211100 00 0112346789999999999999999999999999999999999999998888
Q ss_pred cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccccc
Q 012541 156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN 235 (461)
Q Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~ 235 (461)
+.+|+.|+|+|.++..+ |++++.++|+.|+|+|+++..+|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|+
T Consensus 167 ~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 242 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGE 242 (372)
T ss_pred CccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccc
Confidence 89999999999987653 78888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCC
Q 012541 236 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPD 314 (461)
Q Consensus 236 ~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~ 314 (461)
+...+..+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||.
T Consensus 243 ~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~ 322 (372)
T PRK14286 243 AGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPY 322 (372)
T ss_pred cCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCC
Confidence 9876777899999999999999999999999999999999999999999999997 799999999999999999999997
Q ss_pred CCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 315 INNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 315 ~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
.+. ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus 323 ~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~ 358 (372)
T PRK14286 323 LGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARES 358 (372)
T ss_pred CCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 654 468999999999999999999999999999865
No 11
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-80 Score=639.10 Aligned_cols=336 Identities=34% Similarity=0.634 Sum_probs=290.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccC-CCCCCCC------
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-LSNTSQG------ 74 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~-~~~~~~~------ 74 (461)
-+++++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||++++.++.++ ++++..+
T Consensus 12 ~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~~~~~~~~~ 91 (391)
T PRK14284 12 TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGMGNMEDALR 91 (391)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCcCcccchhh
Confidence 378999999999999999999998 47899999999999999999999999999999876432110 0101000
Q ss_pred ---------C-CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccC
Q 012541 75 ---------V-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDS 144 (461)
Q Consensus 75 ---------~-d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~ 144 (461)
+ ++.|+|++||++.++.|++ ......+.++.|+++.|.|||||+|+|+++++.+.+.+.|++
T Consensus 92 ~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~--------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~ 163 (391)
T PRK14284 92 TFMGAFGGEFGGGGSFFEGLFGGLGEAFGM--------RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDA 163 (391)
T ss_pred hccccccccccccccchhhhccCccccccc--------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCC
Confidence 0 1125566666432111110 001122457899999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCC
Q 012541 145 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 224 (461)
Q Consensus 145 C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~ 224 (461)
|+|+|+..+..+.+|+.|+|+|.++..+ |++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||+.+
T Consensus 164 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 239 (391)
T PRK14284 164 CSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDS 239 (391)
T ss_pred CcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCC
Confidence 9999999999999999999999987543 778888999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeC--CeEEEEeCCCCCCC
Q 012541 225 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE--GMKDLRIPSGVQPG 302 (461)
Q Consensus 225 G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tld--G~~~l~Ip~g~q~G 302 (461)
|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||| +.++|+||+++++|
T Consensus 240 G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g 319 (391)
T PRK14284 240 GMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSG 319 (391)
T ss_pred CCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCC
Confidence 9999999999998888899999999999999999999999999999999999999999999999 56799999999999
Q ss_pred CEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 303 DTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 303 ~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
++++|+|+|||..++ ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 320 ~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 367 (391)
T PRK14284 320 TILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATE 367 (391)
T ss_pred eEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999997653 468999999999999999999999999998753
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.1e-80 Score=635.59 Aligned_cols=337 Identities=35% Similarity=0.664 Sum_probs=300.0
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCCCC----CC
Q 012541 4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTSQG----VD 76 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~~~----~d 76 (461)
++.++|++|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||+++++++.+. +++++.. .+
T Consensus 16 a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (380)
T PRK14297 16 ASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGG 95 (380)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCCCcCcccccc
Confidence 68899999999999999999998 47899999999999999999999999999999887632111 1111101 13
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccc
Q 012541 77 PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCI 156 (461)
Q Consensus 77 ~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~ 156 (461)
+.|+|++|||+. |++.+ . ....+.+++|+++.|.|||||+|+|++++|.+.+.+.|++|+|+|...+..+
T Consensus 96 ~~d~f~~~fgg~---~g~~~------~-~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 165 (380)
T PRK14297 96 FGDIFDSFFGGG---FGSSS------R-RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSP 165 (380)
T ss_pred hhHHHHHHhccC---ccccc------c-ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcC
Confidence 458899999641 21100 0 1122457899999999999999999999999999999999999999988889
Q ss_pred ccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccC
Q 012541 157 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 236 (461)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~ 236 (461)
.+|+.|+|+|+++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|++
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~ 245 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEH 245 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccC
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCC
Q 012541 237 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDIN 316 (461)
Q Consensus 237 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~ 316 (461)
+..+..+|||||+|+|.+|+.|+|+|+||+++++|+|.+||+|+++.|+||||++.|+||+++++|++++|+|+|||..+
T Consensus 246 ~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~ 325 (380)
T PRK14297 246 GKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVN 325 (380)
T ss_pred CCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCC
Confidence 77777899999999999999999999999999999999999999999999999989999999999999999999999764
Q ss_pred CCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 317 NPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 317 ~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
. ..+|||||+|+|.||+.|+++|+++|++|+...
T Consensus 326 ~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 326 S-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred C-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3 468999999999999999999999999999764
No 13
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=7.2e-80 Score=640.37 Aligned_cols=323 Identities=28% Similarity=0.525 Sum_probs=287.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS 82 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~ 82 (461)
-+++++||+|||+||+|||||+|++ +++|++|++||||||||+||++||+||++++.++. ++.|+.|+|+
T Consensus 39 ~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~-------~~~d~~d~f~ 108 (421)
T PTZ00037 39 DCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE-------QPADASDLFD 108 (421)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC-------CCcchhhhHH
Confidence 4789999999999999999999964 58999999999999999999999999998775321 1236778999
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541 83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC 162 (461)
Q Consensus 83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C 162 (461)
.|||+. + . +..+.++.|+.+.|.|||+|+|+|++++|.+.+.+.|+.|+|+|...+ ...+|+.|
T Consensus 109 ~~Fggg----~--~---------~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C 172 (421)
T PTZ00037 109 LIFGGG----R--K---------PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AFVDCKLC 172 (421)
T ss_pred Hhhccc----c--c---------cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CCccCCCC
Confidence 998641 0 0 012357899999999999999999999999999999999999998655 67899999
Q ss_pred CCccEEEEeeecCCcceeeeecCCCCCCccEEEe--eeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCC
Q 012541 163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR 240 (461)
Q Consensus 163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g 240 (461)
+|+|.++...++.+..+++.++|+.|+|+|+++. .+|..|+|.|++.+.++++|.||+|+.+|++|+|+|+|++.+ +
T Consensus 173 ~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~-~ 251 (421)
T PTZ00037 173 NGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKP-N 251 (421)
T ss_pred CCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCC-C
Confidence 9999987777665523345689999999999987 679999999999999999999999999999999999999864 5
Q ss_pred CCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCCCC
Q 012541 241 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINN 317 (461)
Q Consensus 241 ~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~~~ 317 (461)
+.||||||+|++++|+.|+|+|+|||++++|+|.|||||+++.|+||||+ +.|+||+| ++||++++|+|+|||..++
T Consensus 252 ~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~ 331 (421)
T PTZ00037 252 EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKS 331 (421)
T ss_pred CCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCC
Confidence 78999999999999999999999999999999999999999999999997 68999998 9999999999999998765
Q ss_pred CCCCccEEEEEEEEcC--CCCChhHHHHHHHHHhhcC
Q 012541 318 PSVRGDHLFIVNVLIP--KDISDPERALVEEIAFLKS 352 (461)
Q Consensus 318 ~~~rGDL~V~f~V~~P--~~ls~~q~~lle~l~~~~~ 352 (461)
++.+|||||+|+|.|| +.||++|+++|++|+...+
T Consensus 332 ~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~ 368 (421)
T PTZ00037 332 PFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNP 368 (421)
T ss_pred CCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCC
Confidence 5679999999999999 9999999999999997543
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-79 Score=633.26 Aligned_cols=345 Identities=33% Similarity=0.619 Sum_probs=296.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccC-C--CCCCCCCCcc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-L--SNTSQGVDPF 78 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~-~--~~~~~~~d~~ 78 (461)
-++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||+++++++... + +.++.+.++.
T Consensus 14 ~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~ 93 (397)
T PRK14281 14 SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGYGGGGGDFN 93 (397)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCCCcCCCCHH
Confidence 368899999999999999999998 47899999999999999999999999999999887632110 1 1111122333
Q ss_pred cc---cccccCCCCCCCCCC------CCCCCc-ccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCC
Q 012541 79 EL---YSAFFGGSDGLFGGV------GEAGGI-NFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGT 148 (461)
Q Consensus 79 d~---F~~~Fg~~~~~f~~~------g~~~~~-~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~Gs 148 (461)
|+ |++|||+.+ ++++. +.+++. ....+..+.++.|+++.|.|||||+|+|++++|.+.+.+.|++|+|+
T Consensus 94 d~f~~f~~~Fgg~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~ 172 (397)
T PRK14281 94 DIFSAFNDMFGGGA-RRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGT 172 (397)
T ss_pred HHHHHHHHHhCCCc-ccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCc
Confidence 44 457886521 11100 000110 00011123578999999999999999999999999999999999999
Q ss_pred CcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEE
Q 012541 149 GAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 228 (461)
Q Consensus 149 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i 228 (461)
|...+ .+.+|+.|+|+|.++..+++.+|+++++++|+.|+|+|+++...|..|+|.|++...++++|.||+|+++|++|
T Consensus 173 G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 251 (397)
T PRK14281 173 GSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYL 251 (397)
T ss_pred ccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEE
Confidence 99886 68899999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEc
Q 012541 229 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQ 308 (461)
Q Consensus 229 ~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~ 308 (461)
+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus 252 ~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~ 331 (397)
T PRK14281 252 TLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIP 331 (397)
T ss_pred EEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEEEc
Confidence 99999999877778999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 309 QMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 309 g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
|+|||..+. ..+|||||+|+|.||+.||++|+++|++|++.
T Consensus 332 g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 332 GKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 999997653 46899999999999999999999999999974
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-79 Score=632.20 Aligned_cols=341 Identities=30% Similarity=0.518 Sum_probs=286.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccccccc------CCCCCC---
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD------GLSNTS--- 72 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~------~~~~~~--- 72 (461)
-++.++||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||+++..++.. +++.++
T Consensus 20 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~~~~~g~~~ 99 (392)
T PRK14279 20 DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGT 99 (392)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCCCCCCCccc
Confidence 368899999999999999999998 5789999999999999999999999999999753321110 000000
Q ss_pred ----CCCCcccccccccCCCCCC----CCCCCCCC-CcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeecc
Q 012541 73 ----QGVDPFELYSAFFGGSDGL----FGGVGEAG-GINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 143 (461)
Q Consensus 73 ----~~~d~~d~F~~~Fg~~~~~----f~~~g~~~-~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~ 143 (461)
.+.|+.++|+.++++.++. |+++ ++ +........+.+++|+++.|+|||+|+|+|+++++.+.+.+.|+
T Consensus 100 ~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~--fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~ 177 (392)
T PRK14279 100 GGDGAEFNLNDLFDAAGRGGGGGIGDLFGGL--FNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCT 177 (392)
T ss_pred cccccCcChhhhhcccccccccchhhhhhhh--hcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCC
Confidence 1123333333211110000 1100 00 00000112345789999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCC
Q 012541 144 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 223 (461)
Q Consensus 144 ~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~ 223 (461)
+|+|+|...+..+.+|+.|+|+|+++..+ |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|++
T Consensus 178 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 253 (392)
T PRK14279 178 TCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVE 253 (392)
T ss_pred CCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCC
Confidence 99999999998999999999999987643 66778899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCC
Q 012541 224 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGD 303 (461)
Q Consensus 224 ~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~ 303 (461)
+|++|+|+|+|++..+++.+|||||+|+|++|+.|+|+|+||+++++|||.+|++|+++.|+||||++.|+||+++++|+
T Consensus 254 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~ 333 (392)
T PRK14279 254 DGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGR 333 (392)
T ss_pred CCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCC
Confidence 99999999999998777788999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 304 TVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 304 ~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
+++|+|+|||.. .+.+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus 334 ~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~ 379 (392)
T PRK14279 334 ILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE 379 (392)
T ss_pred EEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999963 3468999999999999999999999999999863
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.7e-79 Score=626.45 Aligned_cols=338 Identities=35% Similarity=0.633 Sum_probs=297.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCC-C----
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTS-Q---- 73 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~-~---- 73 (461)
-+++++||+|||+||++||||+|++ ++|+++|++|++||||||||+||++||+||++++...+.+ ++++. .
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g~~~~~~~~ 94 (369)
T PRK14282 15 NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGGFFEDIFK 94 (369)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCCcccccccc
Confidence 4789999999999999999999983 6799999999999999999999999999999876532111 01110 0
Q ss_pred CC-Ccc--cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCc
Q 012541 74 GV-DPF--ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA 150 (461)
Q Consensus 74 ~~-d~~--d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~ 150 (461)
.+ +++ |+|++|||+. ++ + + ..+..+.+++|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|+
T Consensus 95 ~~~~~~~~d~f~~~fgg~----~~-~---~---~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~ 163 (369)
T PRK14282 95 DFENIFNRDIFDIFFGER----RT-Q---E---EQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGV 163 (369)
T ss_pred cccccccchhhhHhhccc----CC-c---c---cccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCC
Confidence 01 111 5666666531 00 0 0 01123457899999999999999999999999999999999999999
Q ss_pred ccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEE
Q 012541 151 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 230 (461)
Q Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l 230 (461)
..+..+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+.+|++|+|
T Consensus 164 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 243 (369)
T PRK14282 164 EPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRI 243 (369)
T ss_pred CCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEE
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEcc
Q 012541 231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQ 309 (461)
Q Consensus 231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g 309 (461)
+|+|+++..++.+|||||+|++++|+.|+|+|+||++++.|||.||++|+++.|+|+||+ ++|+||+|+++|++++|+|
T Consensus 244 ~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~G 323 (369)
T PRK14282 244 TGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKG 323 (369)
T ss_pred ecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECC
Confidence 999999877788999999999999999999999999999999999999999999999996 6999999999999999999
Q ss_pred CCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcC
Q 012541 310 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 352 (461)
Q Consensus 310 ~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~~ 352 (461)
+|||..+. +.+|||||+|+|.+|+.|+.+++++|++|+++..
T Consensus 324 kG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~ 365 (369)
T PRK14282 324 KGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG 365 (369)
T ss_pred CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 99997543 4689999999999999999999999999998654
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6e-79 Score=625.87 Aligned_cols=334 Identities=27% Similarity=0.551 Sum_probs=294.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCC--CCC-----C
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN--TSQ-----G 74 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~--~~~-----~ 74 (461)
-+++++||+|||+||++||||+|+ +++|+++|++|++||||||||+||+.||+||++++.++.+.++. +.. .
T Consensus 14 ~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g~~~~~~~~ 93 (365)
T PRK14285 14 GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIF 93 (365)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCCcccccccc
Confidence 478999999999999999999998 47899999999999999999999999999999887643211010 101 1
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccc
Q 012541 75 VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN 154 (461)
Q Consensus 75 ~d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~ 154 (461)
.++.|+|++|||+. .+ + + ....+.++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.
T Consensus 94 ~~~~d~f~~~fgg~---~~--~---~----~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 161 (365)
T PRK14285 94 EDFGDIFDSFFTGN---RG--Q---D----KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT 161 (365)
T ss_pred ccHHHHHHHhhcCC---cC--C---C----CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence 13447788888631 00 0 0 01124578999999999999999999999999999999999999999988
Q ss_pred ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccc
Q 012541 155 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEG 234 (461)
Q Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G 234 (461)
.+..|+.|+|+|+++. .+|+++++++|+.|+|+|+++.++|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|
T Consensus 162 ~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G 237 (365)
T PRK14285 162 SPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG 237 (365)
T ss_pred CCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence 8999999999998764 458888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCC
Q 012541 235 NFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVP 313 (461)
Q Consensus 235 ~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P 313 (461)
+++.+++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ ++|+||+++++|++++|+|+|||
T Consensus 238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p 317 (365)
T PRK14285 238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMP 317 (365)
T ss_pred ccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCcc
Confidence 99877778999999999999999999999999999999999999999999999995 78999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 012541 314 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 353 (461)
Q Consensus 314 ~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~~~ 353 (461)
..+. ..+|||||+|+|++|+.|+.+|+++|++|+++.+.
T Consensus 318 ~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~ 356 (365)
T PRK14285 318 ILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELKD 356 (365)
T ss_pred CCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 7654 35799999999999999999999999999988764
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-78 Score=622.07 Aligned_cols=332 Identities=36% Similarity=0.667 Sum_probs=290.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcc---
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF--- 78 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~--- 78 (461)
-++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||+++++++.++++.. ...+++
T Consensus 15 ~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~-~~~~~~~~f 93 (373)
T PRK14301 15 DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFS-SAEDIFSHF 93 (373)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCcc-cccccccch
Confidence 368899999999999999999998 478999999999999999999999999999998876421111111 111222
Q ss_pred -cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccc
Q 012541 79 -ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQ 157 (461)
Q Consensus 79 -d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~ 157 (461)
|+|++|||+. + + ++ . ...++.++.|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|......+.
T Consensus 94 ~d~f~~~fg~g-----~-~--~~-~--~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 162 (373)
T PRK14301 94 SDIFGDLFGFS-----G-G--GS-R--RGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPE 162 (373)
T ss_pred HHHHHHHhhcc-----C-c--cc-c--cCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCc
Confidence 4555555311 0 0 00 0 11234678999999999999999999999999999999999999999888889
Q ss_pred cCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCC
Q 012541 158 SCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD 237 (461)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~ 237 (461)
+|+.|+|+|.+...+ |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|+++
T Consensus 163 ~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (373)
T PRK14301 163 TCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG 238 (373)
T ss_pred ccCCccCeeEEEEEe----eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence 999999999987542 7788889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCC
Q 012541 238 RRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317 (461)
Q Consensus 238 ~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~ 317 (461)
..++.+|||||+|+|++|+.|+|+|+||+++++|+|.+||+|+++.|+||||++.|+||+++++|++++|+|+|||..+.
T Consensus 239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~ 318 (373)
T PRK14301 239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGS 318 (373)
T ss_pred CCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCC
Confidence 77778999999999999999999999999999999999999999999999999899999999999999999999997653
Q ss_pred CCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 318 ~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
..+|||||+|+|.+|+.|+++|+++|++|+.+.
T Consensus 319 -~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~ 351 (373)
T PRK14301 319 -SQKGDLLVEVSVVTPTKLTKRQEELLREFEALE 351 (373)
T ss_pred -CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 468999999999999999999999999999763
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-78 Score=621.92 Aligned_cols=339 Identities=34% Similarity=0.561 Sum_probs=289.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccc----cccccccccccCCCCCCCCCCc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDR----FGEAGITGEYDGLSNTSQGVDP 77 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~----~G~~g~~~~~~~~~~~~~~~d~ 77 (461)
-++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+ ||++++.++.+++++++..+|+
T Consensus 20 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~~~~~~~~~ 99 (389)
T PRK14295 20 DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGGGGGFNFDL 99 (389)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCCCCCCCccc
Confidence 368999999999999999999998 46799999999999999999999999999 9998876321111011112344
Q ss_pred ccccccccCCCC-C--------CCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCC
Q 012541 78 FELYSAFFGGSD-G--------LFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGT 148 (461)
Q Consensus 78 ~d~F~~~Fg~~~-~--------~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~Gs 148 (461)
.++|+.++++.+ + .|++ .+++. ..+..+.+++|+++.|.|||||+|+|++++|.+.+.+.|++|+|+
T Consensus 100 ~~~f~~~~~~~~~~~~~~~f~d~f~~--~fg~~--~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~ 175 (389)
T PRK14295 100 GDLFGGGAQGGGGAGGGGGLGDVFGG--LFNRG--GRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGT 175 (389)
T ss_pred ccccccccccccccccccchhhhhcc--cccCC--CCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCccc
Confidence 455543321100 0 0110 00100 011234578999999999999999999999999999999999999
Q ss_pred CcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEE
Q 012541 149 GAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 228 (461)
Q Consensus 149 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i 228 (461)
|...+..+.+|+.|+|+|.++..+ |+|+++++|+.|+|+|+++...|..|.|.|++.+.+.++|.||+|+++|++|
T Consensus 176 G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 251 (389)
T PRK14295 176 GAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRI 251 (389)
T ss_pred ccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEE
Confidence 999998899999999999987653 6778888999999999999999999999999999999999999999999999
Q ss_pred EEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCC-eEEEEeCCCCCCCCEEEE
Q 012541 229 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKL 307 (461)
Q Consensus 229 ~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~~~l 307 (461)
+|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+|||| .+.|+||+++++|++++|
T Consensus 252 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri 331 (389)
T PRK14295 252 RLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRV 331 (389)
T ss_pred EEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEE
Confidence 9999999987778899999999999999999999999999999999999999999999999 579999999999999999
Q ss_pred ccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 308 QQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 308 ~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
+|+|||.. .+.+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 332 ~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~ 373 (389)
T PRK14295 332 RGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREAT 373 (389)
T ss_pred CCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99999963 3468999999999999999999999999999754
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-77 Score=614.96 Aligned_cols=333 Identities=35% Similarity=0.653 Sum_probs=292.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCC---CCCcc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQ---GVDPF 78 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~---~~d~~ 78 (461)
-++.++|++|||+||++||||+|+ +++|+++|++|++||||||||+||+.||+||+++++++.. ++.++. ..++.
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~-~~~~~~~~~~~~~~ 93 (366)
T PRK14294 15 DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGF-SGFSGFDDIFSSFG 93 (366)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCC-CCcCccccchhhhh
Confidence 368899999999999999999998 5789999999999999999999999999999998864211 111111 01234
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541 79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS 158 (461)
Q Consensus 79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~ 158 (461)
|+|++|||.. +++ ++ .....+.+++|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|......+.+
T Consensus 94 d~f~~~fg~g--~~~-----~~---~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 163 (366)
T PRK14294 94 DIFEDFFGFG--GGR-----RG---RSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTT 163 (366)
T ss_pred hhHHHhhccC--CCc-----CC---cccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCccc
Confidence 7788888510 000 00 0012245789999999999999999999999999999999999999998888999
Q ss_pred CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541 159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 238 (461)
Q Consensus 159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~ 238 (461)
|+.|+|+|.++... |++++.++|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|+++.
T Consensus 164 C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 239 (366)
T PRK14294 164 CPQCGGSGQVTQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGV 239 (366)
T ss_pred CCCcCCeEEEEEEe----eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCC
Confidence 99999999987532 78888899999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541 239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP 318 (461)
Q Consensus 239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~ 318 (461)
.++.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||++.|+||+++++|++++|+|+|||..+.
T Consensus 240 ~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~- 318 (366)
T PRK14294 240 RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRG- 318 (366)
T ss_pred CCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCC-
Confidence 7788999999999999999999999999999999999999999999999998899999999999999999999997653
Q ss_pred CCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
..+|||||+|+|.+|+.|+.+|+++|++|+.+.
T Consensus 319 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 351 (366)
T PRK14294 319 GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE 351 (366)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999763
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.3e-77 Score=613.10 Aligned_cols=330 Identities=36% Similarity=0.666 Sum_probs=288.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCC-CCC-C-cc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS-QGV-D-PF 78 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~-~~~-d-~~ 78 (461)
-++.++||+|||+||++||||+|+ +++|+++|++|++|||||+||++|+.||+||++++.++.++++.++ .++ | +.
T Consensus 15 ~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~~~~~~~f~ 94 (371)
T PRK10767 15 NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFG 94 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCccccccchh
Confidence 478999999999999999999998 5789999999999999999999999999999988764321111111 011 2 12
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541 79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS 158 (461)
Q Consensus 79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~ 158 (461)
|+|+.|||+. + + + .+..+.++.|+++.|.|||||+|+|++++|.+.+.+.|+.|+|+|...+.....
T Consensus 95 ~~f~~~fgg~---~---~---~----~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~ 161 (371)
T PRK10767 95 DIFGDIFGGG---R---G---G----GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT 161 (371)
T ss_pred hhhhhhccCC---c---c---c----cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc
Confidence 3444444320 0 0 0 112246789999999999999999999999999999999999999999888899
Q ss_pred CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541 159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 238 (461)
Q Consensus 159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~ 238 (461)
|+.|+|+|.++..+ |++++.++|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+.+|++|+|+|+|+++.
T Consensus 162 C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 237 (371)
T PRK10767 162 CPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGE 237 (371)
T ss_pred CCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCC
Confidence 99999999876543 77787889999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541 239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP 318 (461)
Q Consensus 239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~ 318 (461)
+++.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||.+.|+||+++++|++++|+|+|||..+.
T Consensus 238 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~- 316 (371)
T PRK10767 238 RGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRS- 316 (371)
T ss_pred CCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCC-
Confidence 7778999999999999999999999999999999999999999999999998899999999999999999999997654
Q ss_pred CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
..+|||||+|+|.+|+.|+.+|+++|++|++.
T Consensus 317 ~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 317 GARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999974
No 22
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=6.3e-77 Score=609.88 Aligned_cols=337 Identities=40% Similarity=0.708 Sum_probs=299.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCCC---C-CC
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTSQ---G-VD 76 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~~---~-~d 76 (461)
-++.++||+|||+||++||||+|++++|+++|++|++||||||||.||+.||+||+++++++.++ ++..+. + .+
T Consensus 11 ~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T TIGR02349 11 DASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGD 90 (354)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCCccccCcCc
Confidence 36889999999999999999999988899999999999999999999999999999887642211 111100 1 13
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccc
Q 012541 77 PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCI 156 (461)
Q Consensus 77 ~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~ 156 (461)
+.|+|++|||+. +++ + ......+.+++|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|.......
T Consensus 91 ~~~~f~~~fg~~---~g~-~------~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 160 (354)
T TIGR02349 91 FGDIFGDFFGGG---GGS-G------RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDP 160 (354)
T ss_pred hhhhHHHHhccC---ccc-C------ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCC
Confidence 457888888642 110 0 001123467899999999999999999999999999999999999999988889
Q ss_pred ccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccC
Q 012541 157 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 236 (461)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~ 236 (461)
.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|.|.|++.+.+.++|.||+|+++|++|+|+|+|++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 240 (354)
T TIGR02349 161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNA 240 (354)
T ss_pred ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCC
Q 012541 237 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDIN 316 (461)
Q Consensus 237 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~ 316 (461)
...++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||.++|.||+++++|++++|+|+|||..+
T Consensus 241 ~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~ 320 (354)
T TIGR02349 241 GENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLR 320 (354)
T ss_pred CCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECCCCcCCCC
Confidence 76777899999999999999999999999999999999999999999999999889999999999999999999999765
Q ss_pred CCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 317 NPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 317 ~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
. ..+|||||+|+|.+|+.|+.+|+++|++|++.
T Consensus 321 ~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 321 G-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred C-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4 36899999999999999999999999999864
No 23
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-76 Score=612.88 Aligned_cols=345 Identities=35% Similarity=0.641 Sum_probs=298.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY 81 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F 81 (461)
-++.++|++|||+||++||||+|+ +++|+++|++|++|||||+||+||++||+||+++++++.+.++.++.++++.++|
T Consensus 16 ~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~f 95 (386)
T PRK14289 16 TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIF 95 (386)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCCCcChhhhh
Confidence 378899999999999999999998 5789999999999999999999999999999988764211111111123444554
Q ss_pred cc---ccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541 82 SA---FFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS 158 (461)
Q Consensus 82 ~~---~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~ 158 (461)
+. +|+++.+++++.+.+++ ......+.++.|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|.........
T Consensus 96 ~~f~~~fg~~~gg~~~~~~~~~--~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 173 (386)
T PRK14289 96 SMFGDIFGGHGGGFGGFGGFGG--GGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSET 173 (386)
T ss_pred HHhhhhhcccccCccccccccc--ccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCc
Confidence 33 36432111110000000 00112245789999999999999999999999999999999999999999888999
Q ss_pred CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541 159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 238 (461)
Q Consensus 159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~ 238 (461)
|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|++..
T Consensus 174 C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~ 253 (386)
T PRK14289 174 CPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGK 253 (386)
T ss_pred CCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541 239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP 318 (461)
Q Consensus 239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~ 318 (461)
.++.+|||||+|++.+|+.|+|+++||++++.|+|.+|++|+++.|+|+||++.|+||+++++|++++|+|+|||..++
T Consensus 254 ~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~- 332 (386)
T PRK14289 254 HGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNG- 332 (386)
T ss_pred CCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEEECCCCcCCCCC-
Confidence 6778999999999999999999999999999999999999999999999999899999999999999999999997554
Q ss_pred CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 333 ~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 333 YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999985
No 24
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-76 Score=610.65 Aligned_cols=335 Identities=33% Similarity=0.625 Sum_probs=292.0
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccccc-CCCC--CCCCCCccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLSN--TSQGVDPFE 79 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~-~~~~--~~~~~d~~d 79 (461)
-+++++|++|||+||++||||+|+++.|+++|++|++|||||+||.||+.||+||++++.++.. ++++ ++.+.++.+
T Consensus 14 ~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~~~~~~~~~ 93 (372)
T PRK14300 14 TASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHPDIND 93 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCCccccchhh
Confidence 4789999999999999999999988889999999999999999999999999999988764211 0111 111113446
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccC
Q 012541 80 LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSC 159 (461)
Q Consensus 80 ~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C 159 (461)
+|++||+++ |++.+ . ......+.++.|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+..+.+|
T Consensus 94 ~f~~~f~~~---~gg~~---~--~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C 165 (372)
T PRK14300 94 IFGDFFSDF---MGGSR---R--SRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTC 165 (372)
T ss_pred hHHHHHHhh---cCCCC---C--CCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccC
Confidence 677777542 22111 0 001112357899999999999999999999999999999999999999998889999
Q ss_pred CCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCC
Q 012541 160 KACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR 239 (461)
Q Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~ 239 (461)
+.|+|+|.++.. +|++++..+|+.|+|.|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|+++.+
T Consensus 166 ~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~ 241 (372)
T PRK14300 166 DACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIR 241 (372)
T ss_pred CCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCC
Confidence 999999988653 3788888899999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCC-eEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541 240 RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPDINNP 318 (461)
Q Consensus 240 g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~ 318 (461)
++.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+|||| .++|+||+|+++|++++|+|+|||..++
T Consensus 242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~- 320 (372)
T PRK14300 242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRS- 320 (372)
T ss_pred CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCC-
Confidence 78899999999999999999999999999999999999999999999998 5799999999999999999999997543
Q ss_pred CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
..+|||||+|+|.||+.||++|+++|++|+..
T Consensus 321 ~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~ 352 (372)
T PRK14300 321 TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE 352 (372)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999864
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-76 Score=612.85 Aligned_cols=345 Identities=32% Similarity=0.579 Sum_probs=294.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCC----CCC-CCCCCc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL----SNT-SQGVDP 77 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~----~~~-~~~~d~ 77 (461)
-++.++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++.++.+.. +.+ ..+.++
T Consensus 14 ~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (382)
T PRK14291 14 NATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNI 93 (382)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccccccccccCCCH
Confidence 478999999999999999999999889999999999999999999999999999998875422110 111 112355
Q ss_pred ccccccccCCCC--CCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccc
Q 012541 78 FELYSAFFGGSD--GLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNC 155 (461)
Q Consensus 78 ~d~F~~~Fg~~~--~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~ 155 (461)
.|+|++||+.++ +.|++.+..++ .......+.+++|+.+.|.|||+|+|+|+++++.+.+.+.|..|+|+|...+..
T Consensus 94 ~d~f~~~f~~fg~~~~fg~~~~~~~-~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 172 (382)
T PRK14291 94 EDILEDVFDIFGFGDIFGRRRATRE-RRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSG 172 (382)
T ss_pred HHHHHHHHHhccccccccccccccc-cccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCC
Confidence 677888754221 11221100000 000112245789999999999999999999999999999999999999999988
Q ss_pred cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccccc
Q 012541 156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN 235 (461)
Q Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~ 235 (461)
+.+|+.|+|+|.++.. .|++++.++|+.|+|+|. +...|..|+|.|++.+.++++|.||||+.+|++|+|+|+|+
T Consensus 173 ~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 247 (382)
T PRK14291 173 EKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGH 247 (382)
T ss_pred CccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcC
Confidence 9999999999988764 266777899999999995 78889999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCC
Q 012541 236 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPD 314 (461)
Q Consensus 236 ~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~ 314 (461)
.+.+++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+|+++|++++|+|+|||.
T Consensus 248 ~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~ 327 (382)
T PRK14291 248 AGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPR 327 (382)
T ss_pred CCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCC
Confidence 9877889999999999999999999999999999999999999999999999996 689999999999999999999997
Q ss_pred CCCCCCCccEEEEEEEEcCC--CCC------hhHHHHHHHHHhhcCCC
Q 012541 315 INNPSVRGDHLFIVNVLIPK--DIS------DPERALVEEIAFLKSPG 354 (461)
Q Consensus 315 ~~~~~~rGDL~V~f~V~~P~--~ls------~~q~~lle~l~~~~~~~ 354 (461)
.+. ..+|||||+|+|.||+ .|| ++|++||++|+++....
T Consensus 328 ~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~~ 374 (382)
T PRK14291 328 LKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPEP 374 (382)
T ss_pred CCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCCc
Confidence 653 4689999999999998 599 99999999999877543
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-76 Score=611.15 Aligned_cols=341 Identities=33% Similarity=0.624 Sum_probs=293.5
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS 82 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~ 82 (461)
-+++++||+|||+||+|||||+|++++|+++|++|++||||||||+||++||+||++++.+... ++. ..+.++.++|.
T Consensus 16 ~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~-~~~-~~~~~~~~~~~ 93 (378)
T PRK14283 16 NADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQ-EDI-FNNINFEDIFQ 93 (378)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccc-ccc-ccccCcccccc
Confidence 4789999999999999999999998899999999999999999999999999999987753110 000 00112223333
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541 83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC 162 (461)
Q Consensus 83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C 162 (461)
.|+++.+..|..++ +++. ....+.++.|++++|.|||+|+|+|+++++.+.+.+.|++|+|+|...+.....|+.|
T Consensus 94 ~~~~~~~~~f~~~~-fgg~---~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 169 (378)
T PRK14283 94 GFGFGIGNIFDMFG-FGGG---SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTC 169 (378)
T ss_pred ccccchhhhccccc-cCCC---CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCc
Confidence 32211100111000 0000 0112357899999999999999999999999999999999999999988889999999
Q ss_pred CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541 163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL 242 (461)
Q Consensus 163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~ 242 (461)
+|+|.++..+++.+|++++..+|+.|+|.|+.+...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|++...++.
T Consensus 170 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~ 249 (378)
T PRK14283 170 GGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGE 249 (378)
T ss_pred CCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999998776678
Q ss_pred CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCc
Q 012541 243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRG 322 (461)
Q Consensus 243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rG 322 (461)
+|||||+|+|.+|+.|+|+|+||++++.|+|.+|++|+++.|+||||.+.|+||+++++|++++|+|+|||.... ..+|
T Consensus 250 ~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~G 328 (378)
T PRK14283 250 PGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRW-SGKG 328 (378)
T ss_pred CccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCC-CCCC
Confidence 999999999999999999999999999999999999999999999998899999999999999999999997553 4689
Q ss_pred cEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 323 DHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 323 DL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
||||+|+|.||+.|+++|+++|++|+..
T Consensus 329 dL~v~~~v~~P~~l~~~q~~ll~~~~~~ 356 (378)
T PRK14283 329 NLYVKVKVVVPKKLSPKQKELLREFASI 356 (378)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999864
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-76 Score=606.41 Aligned_cols=335 Identities=31% Similarity=0.585 Sum_probs=295.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS 82 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~ 82 (461)
-+++++|++|||+||++||||+|++++|+++|++|++||||||||++|+.||+||+++..+..++++.++.++|+.|+|+
T Consensus 13 ~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~d~~d~f~ 92 (371)
T PRK14292 13 TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGFDPMDIFE 92 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccCCChHHHHH
Confidence 47899999999999999999999988899999999999999999999999999999864321111111222357779999
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccc-ccccCCC
Q 012541 83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN-CIQSCKA 161 (461)
Q Consensus 83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~-~~~~C~~ 161 (461)
.|||+. ++++ + . ....+.++.|+.+.+.|||+|+|+|+++++.+.+.+.|++|+|+|..... ...+|+.
T Consensus 93 ~~fg~~--~~~~-~-~------~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~ 162 (371)
T PRK14292 93 QLFGGA--GFGG-G-R------GRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPT 162 (371)
T ss_pred HhhCCC--CcCC-C-C------CcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCC
Confidence 999752 1110 0 0 01124578999999999999999999999999999999999999998765 4789999
Q ss_pred cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541 162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS 241 (461)
Q Consensus 162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~ 241 (461)
|+|+|.+...+++.+|++++.++|+.|+|.|..+...|..|.|.|++...+.++|.||+|+.+|++|+|+|+|+++..+
T Consensus 163 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~- 241 (371)
T PRK14292 163 CRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG- 241 (371)
T ss_pred CCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCC-
Confidence 9999999888888889999889999999999999999999999999999999999999999999999999999986543
Q ss_pred CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541 242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR 321 (461)
Q Consensus 242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r 321 (461)
. |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+..|+||+|+++|++++|+|+|||..++ ..+
T Consensus 242 ~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~-~~~ 319 (371)
T PRK14292 242 N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQG-AGT 319 (371)
T ss_pred C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCC-CCC
Confidence 3 99999999999999999999999999999999999999999999998789999999999999999999997654 368
Q ss_pred ccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 322 GDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 320 GDL~V~~~v~~P~~l~~~q~~ll~~~~~~ 348 (371)
T PRK14292 320 GDLIVEYEIAVPKQLSPEAREALEAYARA 348 (371)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999864
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-75 Score=604.23 Aligned_cols=342 Identities=43% Similarity=0.782 Sum_probs=301.0
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS 82 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~ 82 (461)
-+++++|++|||+||++||||+|++++|+++|++|++||+|||||+||++||+||+++++++.+.++.++ ..++.|+|+
T Consensus 14 ~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~-~~~~~d~f~ 92 (374)
T PRK14293 14 DADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGD-MGGFADIFE 92 (374)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCccc-ccchHHHHH
Confidence 3689999999999999999999998889999999999999999999999999999987763211011110 112347889
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541 83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC 162 (461)
Q Consensus 83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C 162 (461)
+||+++++ ++ + .+. .. ....+.++.|+++.|.|||||+|+|+++++.+.+.+.|..|+|+|........+|+.|
T Consensus 93 ~~fg~~~~-~~--~-~~~-~~-~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 166 (374)
T PRK14293 93 TFFSGFGG-AG--G-QGG-RR-RRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTC 166 (374)
T ss_pred HHhcccCC-CC--C-CCc-cc-cccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCC
Confidence 99864211 11 0 000 00 1122457899999999999999999999999999999999999999988888999999
Q ss_pred CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541 163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL 242 (461)
Q Consensus 163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~ 242 (461)
+|+|.++..+++++|++++.++|+.|+|.|+++...|..|.|.|++.+.+.++|.||+|+++|++|+|+|+|++...+..
T Consensus 167 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~ 246 (374)
T PRK14293 167 GGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGP 246 (374)
T ss_pred CCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999998766677
Q ss_pred CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCc
Q 012541 243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRG 322 (461)
Q Consensus 243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rG 322 (461)
+|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+||||+++|+||+++++|++++|+|+|||..+..+.+|
T Consensus 247 ~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~G 326 (374)
T PRK14293 247 PGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARG 326 (374)
T ss_pred CcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999888999999999999999999999766545689
Q ss_pred cEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 323 DHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 323 DL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
||||+|+|+||+.|+++|+++|++|+++.
T Consensus 327 DL~v~~~v~~P~~l~~~~~~l~~~l~~~~ 355 (374)
T PRK14293 327 DHLITVKVKIPTRISDEERELLEKLAKIK 355 (374)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999764
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6e-75 Score=596.81 Aligned_cols=340 Identities=31% Similarity=0.580 Sum_probs=290.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC-h-hhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCC--CCCCcc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS-P-GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS--QGVDPF 78 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-~-~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~--~~~d~~ 78 (461)
-++..+|++|||+||++||||+|++ + +|+++|++|++||||||||+||++||+||+++++++.++.++++ ...|+.
T Consensus 14 ~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~~~~~~ 93 (365)
T PRK14290 14 NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNFTHFSDIN 93 (365)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCccccccccccchh
Confidence 4789999999999999999999984 3 79999999999999999999999999999988753211000000 013567
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541 79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS 158 (461)
Q Consensus 79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~ 158 (461)
|+|+.|||+. |++.. +++... ....+.+++|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.... ...+
T Consensus 94 d~f~~~fg~~---~~~~~-~~~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~-~~~~ 167 (365)
T PRK14290 94 DIFNQIFGGN---FGSDF-FSGFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLIT 167 (365)
T ss_pred HHHHHHhcCc---ccccc-cccccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCC-CCcc
Confidence 8999999742 11000 001000 0111234789999999999999999999999999999999999999876 6789
Q ss_pred CCCcCCccEEEEeeecCCccee--eeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccC
Q 012541 159 CKACWGRGGVLKTQRTPFGLIS--QVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 236 (461)
Q Consensus 159 C~~C~G~G~~~~~~~~~~g~~~--~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~ 236 (461)
|+.|+|+|++...+. +|++. +..+|+.|+|.|+++...|..|+|.|++.+.+.++|.||+|+.+|++|+|+|+|+.
T Consensus 168 C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 245 (365)
T PRK14290 168 CPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS 245 (365)
T ss_pred CCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC
Confidence 999999998876653 45553 35799999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCC
Q 012541 237 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDIN 316 (461)
Q Consensus 237 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~ 316 (461)
.++.+|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+|++|.++|+||+++++|++++|+|+|||...
T Consensus 246 --~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~p~~~ 323 (365)
T PRK14290 246 --YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLN 323 (365)
T ss_pred --CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCCCCCCCC
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 012541 317 NPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 353 (461)
Q Consensus 317 ~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~~~ 353 (461)
. ..+|||||+|+|.+|+.|+++++++|++|+.+...
T Consensus 324 ~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~~ 359 (365)
T PRK14290 324 G-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN 359 (365)
T ss_pred C-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 4 36899999999999999999999999999976643
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-71 Score=549.03 Aligned_cols=317 Identities=34% Similarity=0.620 Sum_probs=284.1
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541 2 FVRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY 81 (461)
Q Consensus 2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F 81 (461)
|-|+..+||+|||+||+|||||+||+ |.||||||++||||||||+||++||+||+++++++++++++ +. |
T Consensus 14 ~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~-------~~-f 83 (337)
T KOG0712|consen 14 PDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF-------GG-F 83 (337)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC-------cc-H
Confidence 56899999999999999999999975 89999999999999999999999999999999765432211 11 8
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541 82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA 161 (461)
Q Consensus 82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~ 161 (461)
++||+ |++.+ + ..+.|++|+.+.++|||||+|.|.++++.+++..+|+.|+|+|.+++... .|+.
T Consensus 84 ~~~F~-----~g~~~---~------~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~C~~ 148 (337)
T KOG0712|consen 84 SQFFG-----FGGNG---G------RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KCTT 148 (337)
T ss_pred HHhcc-----CCCcC---c------cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-CCCC
Confidence 88886 22111 0 11234999999999999999999999999999999999999999987654 8999
Q ss_pred cCCccEEEEeeecCCcceeee-ecCCCCCCccEEEe--eeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541 162 CWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 238 (461)
Q Consensus 162 C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~ 238 (461)
|.|+|..+.+.++.+|+.|+. ..|..|+|+|..|. +.|..|.|.+++...+.++|.|++|+.+++.|.+.|++++..
T Consensus 149 C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~ 228 (337)
T KOG0712|consen 149 CRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAP 228 (337)
T ss_pred CCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecC
Confidence 999999999999999999876 68999999999854 569999999999999999999999999999999999999864
Q ss_pred CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCC
Q 012541 239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDI 315 (461)
Q Consensus 239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~ 315 (461)
+..|||+++.|..++|+.|.|.++||++..+|++.||++|+.+.+.||||+ +.+.++|| ++||++++|+|+|||+.
T Consensus 229 -g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~ 307 (337)
T KOG0712|consen 229 -GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIF 307 (337)
T ss_pred -CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccc
Confidence 566999999999999999999999999999999999999999999999997 57888887 99999999999999999
Q ss_pred CCCCCCccEEEEEEEEcCCCCChhHHHHHHHH
Q 012541 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347 (461)
Q Consensus 316 ~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l 347 (461)
+++ +|||||+|.|+||+ +++++...|+.+
T Consensus 308 ~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~ 336 (337)
T KOG0712|consen 308 RNP--KGDLYIKFEVKFPK-LSPSQLKMLEDL 336 (337)
T ss_pred cCC--CCcEEEEEEEEcCC-CChHHHHHHHhh
Confidence 886 99999999999999 999998888876
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-59 Score=468.29 Aligned_cols=264 Identities=33% Similarity=0.557 Sum_probs=219.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC-----CC-CCCC---
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-----LS-NTSQ--- 73 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~-----~~-~~~~--- 73 (461)
-+++++||+|||+||++||||+|++++|+++|++|++||||||||+||+.||+||++++.++..+ ++ ++..
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (291)
T PRK14299 15 NASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFN 94 (291)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCCCCCccccC
Confidence 37899999999999999999999988999999999999999999999999999999865432110 01 1111
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccc
Q 012541 74 GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSS 153 (461)
Q Consensus 74 ~~d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~ 153 (461)
..++.|+|++|||+.+ ++++ ++.........+.++.|+++.+.|||+|+|.|+++++.+.
T Consensus 95 ~~~~~d~f~~~fgg~~-~~~~---~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---------------- 154 (291)
T PRK14299 95 VGDFSDFFQQLFGGRG-GFGG---FGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---------------- 154 (291)
T ss_pred cCCHHHHHHHHhCCCC-CCCC---cccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----------------
Confidence 1245588999997421 1111 0100000012245789999999999999999999887542
Q ss_pred cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccc
Q 012541 154 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE 233 (461)
Q Consensus 154 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~ 233 (461)
.+.++|+||+|+++|++|+++|+
T Consensus 155 ---------------------------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~ 177 (291)
T PRK14299 155 ---------------------------------------------------------GERLSVRIPPGVREGQVIRLAGK 177 (291)
T ss_pred ---------------------------------------------------------CEEEEEecCCCcCCCcEEEECCC
Confidence 14689999999999999999999
Q ss_pred ccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCC
Q 012541 234 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVP 313 (461)
Q Consensus 234 G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P 313 (461)
|++. |||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+||||.++|+||+++++|++++|+|+|||
T Consensus 178 G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g~G~p 251 (291)
T PRK14299 178 GRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWP 251 (291)
T ss_pred CCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECCCCCC
Confidence 9862 9999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 314 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 314 ~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
.. ++.+|||||+|+|.+|+.|+++|+++|++|++..
T Consensus 252 ~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~ 287 (291)
T PRK14299 252 RG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAELY 287 (291)
T ss_pred CC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 63 3568999999999999999999999999998764
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.7e-57 Score=457.42 Aligned_cols=275 Identities=24% Similarity=0.392 Sum_probs=227.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccc----cccccccCCCC-CCCCCCc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA----GITGEYDGLSN-TSQGVDP 77 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~----g~~~~~~~~~~-~~~~~d~ 77 (461)
-++.++||+|||+||+|||||+|++++|+++|++|++|||||+||+||+.||+||+. ++.+....+++ .....|+
T Consensus 15 ~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (306)
T PRK10266 15 TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDF 94 (306)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCCCCCCCCCH
Confidence 478999999999999999999999889999999999999999999999999999864 22211110011 1112355
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccc
Q 012541 78 FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQ 157 (461)
Q Consensus 78 ~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~ 157 (461)
.++|+.|||+. ++.. ....+.++.|+.+.+.|||+|+++|+.+++.+.+.+ |
T Consensus 95 ~~~f~~~~g~~----~~~~--------~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~------------ 146 (306)
T PRK10266 95 DDIFSSIFGQH----ARQS--------RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y------------ 146 (306)
T ss_pred HHHHHHHhCCC----CCCC--------CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c------------
Confidence 68888888641 1000 011235789999999999999999999999887531 2
Q ss_pred cCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCC
Q 012541 158 SCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD 237 (461)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~ 237 (461)
.|.|.+.. ...+.++|.||+|+++|++|+|+|+|++.
T Consensus 147 -----~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 183 (306)
T PRK10266 147 -----NAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQRIRLKGQGTPG 183 (306)
T ss_pred -----cCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCcEEEEecCCcCC
Confidence 12221110 11357999999999999999999999997
Q ss_pred CCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCC
Q 012541 238 RRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317 (461)
Q Consensus 238 ~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~ 317 (461)
.++..+|||||+|++.+|+.|+|+|+||+++++|||.+|++|+++.|+|++|.+.|+||+++++|++++|+|+|||..
T Consensus 184 ~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~-- 261 (306)
T PRK10266 184 ENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSK-- 261 (306)
T ss_pred CCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCC--
Confidence 777789999999999999999999999999999999999999999999999998999999999999999999999964
Q ss_pred CCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351 (461)
Q Consensus 318 ~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~ 351 (461)
+.+|||||+|+|.+|+.|+++|+++|++|+.+.
T Consensus 262 -~~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~ 294 (306)
T PRK10266 262 -KQTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ 294 (306)
T ss_pred -CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 258999999999999999999999999999863
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-43 Score=346.85 Aligned_cols=234 Identities=38% Similarity=0.703 Sum_probs=208.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSA 83 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~~ 83 (461)
++++|||+||++||++||||.|++++|+++|++|++|||||||++||++||++|..+. + ..+.||+++|..
T Consensus 55 At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~-~--------~~~g~~~~~~~~ 125 (288)
T KOG0715|consen 55 ATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH-G--------EFGGNPFDVFLE 125 (288)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-c--------cccCCccchHHH
Confidence 6889999999999999999999999999999999999999999999999999998761 1 112388999999
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcC
Q 012541 84 FFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACW 163 (461)
Q Consensus 84 ~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~ 163 (461)
+|++. ..+...+.++++++.++|+|+..|+.+.+.+.....|.+|.|.|...+.....|..|.
T Consensus 126 ~~~~~-----------------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 188 (288)
T KOG0715|consen 126 FFGGK-----------------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCS 188 (288)
T ss_pred hhccc-----------------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhh
Confidence 88640 0123455678899999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCC
Q 012541 164 GRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLA 243 (461)
Q Consensus 164 G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~ 243 (461)
|+|.+......+|... +|..|+|.|.++...|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.|..
T Consensus 189 ~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~------- 257 (288)
T KOG0715|consen 189 GRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND------- 257 (288)
T ss_pred CcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------
Confidence 9998776555555443 99999999999999999999999888999999999999999999999998764
Q ss_pred ccEEEEEEEEecccccccccceEEeeecCHHH
Q 012541 244 GDLFVALHVDEKQGIHRDGLNLFSKISVDYTE 275 (461)
Q Consensus 244 GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~e 275 (461)
||+|.+.|.+++.|+|+|.|++++..|++++
T Consensus 258 -~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 -DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred -eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998764
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=340.68 Aligned_cols=298 Identities=27% Similarity=0.377 Sum_probs=228.5
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS 82 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~ 82 (461)
|+-++||+|||+||+|||||+|| +|.|.++|++|+.||||||||+||+.||+||++++......+.++.. -.++|+
T Consensus 28 Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~---~~~~f~ 104 (336)
T KOG0713|consen 28 ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGG---GNDIFS 104 (336)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCc---ccchHH
Confidence 67899999999999999999999 59999999999999999999999999999999999753211111111 157788
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541 83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC 162 (461)
Q Consensus 83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C 162 (461)
.||+..+..+++. .. .....+|.++...++.++++.|.|...+..-.+.+.|.. .|+- ...|.
T Consensus 105 ~~f~dfg~~~~g~-------~~-~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~~------~~~~~-- 167 (336)
T KOG0713|consen 105 AFFGDFGVTVGGN-------PL-EEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGTR------KCNCR-- 167 (336)
T ss_pred HhhcccccccCCC-------cc-cCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Cccc------ccCCh--
Confidence 8887543222221 11 122678899999999999999999887766655555432 2111 11111
Q ss_pred CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541 163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL 242 (461)
Q Consensus 163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~ 242 (461)
..+.+++...|.+++.+ ...|..|.+.+.......+++.+..|+..|....+..+|.+.. -+.
T Consensus 168 ----~~~~~~~~~~g~~~~~q------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~ 230 (336)
T KOG0713|consen 168 ----LEMFTQQEGPGRFQMLQ------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHI-DGV 230 (336)
T ss_pred ----hhheeeccCCChhhhhh------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcce-ecc
Confidence 11122222333333221 1235555566677778999999999999999999999998764 468
Q ss_pred CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541 243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVR 321 (461)
Q Consensus 243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r 321 (461)
+||+++.+...+|+.|.|+++||++++.|++.+++.|...++.++|+. +.++...++-|+..++..++|||..+.....
T Consensus 231 ~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~~ 310 (336)
T KOG0713|consen 231 PGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNEK 310 (336)
T ss_pred cCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhhccchh
Confidence 999999999999999999999999999999999999999999999996 3555566799999999999999988777788
Q ss_pred ccEEEEEEEEcCCC-CCh
Q 012541 322 GDHLFIVNVLIPKD-ISD 338 (461)
Q Consensus 322 GDL~V~f~V~~P~~-ls~ 338 (461)
|++|++|.+.+|.+ ++.
T Consensus 311 ~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 311 GNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred cceeEEecccCcccccch
Confidence 99999999999965 554
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.97 E-value=2.6e-31 Score=283.88 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=140.1
Q ss_pred CcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCc
Q 012541 112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 191 (461)
Q Consensus 112 g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 191 (461)
.-||++.+.|+|+|+|+|++|++++.|.+.| |.|
T Consensus 656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G------------------------------------------ 689 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT------------------------------------------ 689 (871)
T ss_pred ccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC------------------------------------------
Confidence 3477889999999999999999999886554 111
Q ss_pred cEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeec
Q 012541 192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV 271 (461)
Q Consensus 192 G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I 271 (461)
...+...+.++|+||+|+++|++|+|+|+|+.+. ++ +|||||+|++++|+.|+|+|+|||+++.|
T Consensus 690 -------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~I 754 (871)
T TIGR03835 690 -------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALV 754 (871)
T ss_pred -------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEec
Confidence 1113345799999999999999999999999863 33 49999999999999999999999999999
Q ss_pred CHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEE-cCCC
Q 012541 272 DYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL-IPKD 335 (461)
Q Consensus 272 sl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~-~P~~ 335 (461)
+|.+||+|+++.|+||||++.|+||++++||++++|+|+|||... +.||||||+|+|. ++++
T Consensus 755 SL~EALLGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 755 DPLVAYNGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred CHHHHhcCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence 999999999999999999889999999999999999999999532 4689999999998 4543
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.7e-22 Score=196.22 Aligned_cols=251 Identities=27% Similarity=0.393 Sum_probs=177.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCh--hhHHHHHHHHHHHhhccccccccccccccccccccccc-CCC--CC---CCCC
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLS--NT---SQGV 75 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~--~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~-~~~--~~---~~~~ 75 (461)
++..+|++||++||++||||+|+.+ .|+++|++|++|||||||+.||+.||+||++++.+... .+. .+ ....
T Consensus 15 as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (306)
T KOG0714|consen 15 ASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFSSSFTSELFYFLFR 94 (306)
T ss_pred ccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCCCCCCCCcceeccC
Confidence 6788999999999999999999976 77779999999999999999999999999977665211 111 11 1123
Q ss_pred CcccccccccCCCCCCCCC------------C---CCCC---Ccccc----------cCCCCCCCcccccccccccceee
Q 012541 76 DPFELYSAFFGGSDGLFGG------------V---GEAG---GINFN----------FGNKGNFGLDIRYDLHLSFEESI 127 (461)
Q Consensus 76 d~~d~F~~~Fg~~~~~f~~------------~---g~~~---~~~~~----------~~~~~~~g~di~~~l~lslee~~ 127 (461)
++.+.|..|||........ . +..+ ...+. ......+...+...+.+++++.+
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (306)
T KOG0714|consen 95 KPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPPVEHPLRVSLEDLY 174 (306)
T ss_pred chhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCCccCCcceeHHHhc
Confidence 5566777788633211100 0 0000 00000 00011122224445555777777
Q ss_pred cceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceE
Q 012541 128 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGE 207 (461)
Q Consensus 128 ~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~ 207 (461)
.|+.+...+.+...= . .. ...
T Consensus 175 ~~~~~~~~~~~~~~~-----------------------------------------~--------------~~----~~~ 195 (306)
T KOG0714|consen 175 KGESKKMKISRQSFT-----------------------------------------S--------------NG----REG 195 (306)
T ss_pred cccceeeeccccccc-----------------------------------------C--------------Cc----ccc
Confidence 777766665432110 0 00 001
Q ss_pred EeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe--eecCHHHHHcCCeeEEe
Q 012541 208 VQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK--ISVDYTEAILGTSMEVE 285 (461)
Q Consensus 208 v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~--~~Isl~eAllG~~i~V~ 285 (461)
......+.+.+.+++..|..+....+|+.... ..|-++++.+..++|+.|.|.++||... ..|++.+|++|....++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~ 274 (306)
T KOG0714|consen 196 SSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVP 274 (306)
T ss_pred cCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeee
Confidence 23357899999999999999999999987543 6788999999999999999999999999 99999999999999999
Q ss_pred eeCCeE-EEEeC-CCCCCCCEEEEccCCCCC
Q 012541 286 TVEGMK-DLRIP-SGVQPGDTVKLQQMGVPD 314 (461)
Q Consensus 286 tldG~~-~l~Ip-~g~q~G~~~~l~g~G~P~ 314 (461)
+++|.. .+.+. .-+.++...+++++|+|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 275 TLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cccCccccCcccccccCCCceeeecCCCCCC
Confidence 999963 44444 568999999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.85 E-value=1.5e-21 Score=158.97 Aligned_cols=80 Identities=30% Similarity=0.656 Sum_probs=70.5
Q ss_pred ceEEeeecCHHHHHcCCeeEEeeeCC-eEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHH
Q 012541 264 NLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA 342 (461)
Q Consensus 264 DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~ 342 (461)
|||++++|+++||++|+++.|+|+|| .++|+||+++++|++++|+|+|||...+++.+|||||+|+|.+|++||++|++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999 67999999999999999999999988876689999999999999999999987
Q ss_pred H
Q 012541 343 L 343 (461)
Q Consensus 343 l 343 (461)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.67 E-value=2.9e-17 Score=180.25 Aligned_cols=61 Identities=30% Similarity=0.453 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~ 63 (461)
-+++.+||+|||+||++||||+|+++.|+++|++|++||+|||||++|+.||+||.+|+..
T Consensus 584 dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 584 NADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 4789999999999999999999997789999999999999999999999999999987653
No 39
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.6e-16 Score=146.08 Aligned_cols=56 Identities=46% Similarity=0.640 Sum_probs=51.6
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCC-hh-hHHHHHHHHHHHhhcccccccccccccc
Q 012541 2 FVRMPRCRRSRPLTESLLYHPDINKS-PG-AEEKFKEISSAYEVLSDDEKRSVYDRFG 57 (461)
Q Consensus 2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~-aeekFkeI~eAYEVLsD~~KR~~YD~~G 57 (461)
+-++.++|++|||+||++||||+|++ +. |+++|++|++||+||||+.+|+.||+++
T Consensus 16 ~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 16 PNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 35789999999999999999999995 53 9999999999999999999999999984
No 40
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.6e-17 Score=156.68 Aligned_cols=59 Identities=44% Similarity=0.702 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 62 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~-~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~ 62 (461)
+-.++|++|||+||++||||+|++ |++.+||+|||+||+|||||.||..||.||+.++.
T Consensus 43 at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 43 ATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred cchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 446789999999999999999996 99999999999999999999999999999998764
No 41
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.3e-17 Score=161.02 Aligned_cols=77 Identities=36% Similarity=0.567 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY 81 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F 81 (461)
-+++++|++|||.+|++||||+|| ||.|.++|+++++||+||+|+++|+.||.+|..+.... ...++.++|
T Consensus 16 ~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~--------~~~d~~~~~ 87 (296)
T KOG0691|consen 16 DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ--------GREDQADGF 87 (296)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch--------hhhhHHHHH
Confidence 368899999999999999999999 69999999999999999999999999999998765432 123777888
Q ss_pred ccccCC
Q 012541 82 SAFFGG 87 (461)
Q Consensus 82 ~~~Fg~ 87 (461)
...|++
T Consensus 88 r~~f~~ 93 (296)
T KOG0691|consen 88 RKKFGS 93 (296)
T ss_pred HHHhhh
Confidence 877753
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.3e-16 Score=160.85 Aligned_cols=61 Identities=34% Similarity=0.468 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 64 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~ 64 (461)
+++.+|+++||+||++||||+||+ ++|.++|+.|++||||||||+.|+-||.+-+.-|.+.
T Consensus 20 a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 20 ADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 688999999999999999999996 7899999999999999999999999999988666553
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=9e-16 Score=156.60 Aligned_cols=59 Identities=42% Similarity=0.669 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 62 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~----~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~ 62 (461)
++-++|++|||++++-||||+.-| +.||++|+.|.+||||||||.||++||.||+.|++
T Consensus 21 At~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 21 ATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred cCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 577899999999999999999864 46999999999999999999999999999999998
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.55 E-value=3.3e-15 Score=135.06 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccccc
Q 012541 5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAF 84 (461)
Q Consensus 5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~~~ 84 (461)
+..+||+|||+||++||||+|++ +++|++|++||+||+|+.+|..||.+|........ ..|.++|..+
T Consensus 20 s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~---------~~~~~~f~~~ 87 (153)
T PHA03102 20 NLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE---------DVPSGYVGAT 87 (153)
T ss_pred CHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCccccccc---------ccHHHHhhhh
Confidence 88999999999999999999854 57999999999999999999999999986543211 2377888888
Q ss_pred cCC
Q 012541 85 FGG 87 (461)
Q Consensus 85 Fg~ 87 (461)
||+
T Consensus 88 fg~ 90 (153)
T PHA03102 88 FGD 90 (153)
T ss_pred cCC
Confidence 854
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.3e-15 Score=139.34 Aligned_cols=56 Identities=39% Similarity=0.576 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC---hhhHHHHHHHHHHHhhcccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKS---PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 59 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~---~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~ 59 (461)
+++++||+||++||++||||+|++ .+|.+||+.++.||+||||.+||+.||+-|.-
T Consensus 26 a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 26 ATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred CCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 678999999999999999999973 57999999999999999999999999998864
No 46
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.52 E-value=1.7e-14 Score=112.90 Aligned_cols=65 Identities=48% Similarity=0.999 Sum_probs=55.3
Q ss_pred ccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEE-eeeccccCCce
Q 012541 142 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII-IDHCRRCGGNG 206 (461)
Q Consensus 142 C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i-~~~C~~C~G~g 206 (461)
|+.|+|+|++.+..+.+|+.|+|+|+++..++++++.+++.++|+.|+|+|++| .++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999999999999999999999998899999999999999999999999 88999999975
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.50 E-value=1.2e-14 Score=156.93 Aligned_cols=60 Identities=35% Similarity=0.525 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 62 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~ 62 (461)
-++.++||+|||+||++||||+++++.|+++|++|++||+|||||.+|+.||+||.+++.
T Consensus 13 dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 13 DADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 367899999999999999999998888999999999999999999999999999988764
No 48
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.9e-14 Score=144.04 Aligned_cols=119 Identities=30% Similarity=0.659 Sum_probs=93.1
Q ss_pred eeeeccCCCCCCccccc-------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeee------------
Q 012541 138 CFETCDSCGGTGAKSSN-------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH------------ 198 (461)
Q Consensus 138 r~~~C~~C~GsG~~~~~-------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~------------ 198 (461)
...+|++|+|+|..... ...+|++|+|+|.++. .+|++|+|.|.+....
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~ 225 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD 225 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence 56789999999975332 4689999999999864 6899999999865541
Q ss_pred ------------------------------------------cc--------ccCCceEEee-cceEEEEeCCCCCCCCE
Q 012541 199 ------------------------------------------CR--------RCGGNGEVQS-KRSMKVVIPPGVSNGAT 227 (461)
Q Consensus 199 ------------------------------------------C~--------~C~G~g~v~~-~k~l~V~IP~Gv~~G~~ 227 (461)
|. ..++.-.+++ ...++|+||+|+++|++
T Consensus 226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~ 305 (371)
T COG0484 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV 305 (371)
T ss_pred CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence 11 1144445554 44599999999999999
Q ss_pred EEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe
Q 012541 228 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 268 (461)
Q Consensus 228 i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 268 (461)
++|+|+|.+..++...|||||+|+|..+..+......|+.+
T Consensus 306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 99999999987777789999999999998877666555444
No 49
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.49 E-value=1.7e-14 Score=111.71 Aligned_cols=52 Identities=42% Similarity=0.526 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCCh--hhHHHHHHHHHHHhhccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYD 54 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~--~aeekFkeI~eAYEVLsD~~KR~~YD 54 (461)
-++.++|++||++|+++||||+++.. .++++|++|++||++|+||.+|+.||
T Consensus 11 ~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 11 DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 36789999999999999999999864 49999999999999999999999998
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.49 E-value=4.3e-14 Score=140.30 Aligned_cols=59 Identities=34% Similarity=0.397 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~----~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~ 63 (461)
++.++|.+|||+||.|||||--.+ +.||+||-+|..|-||||||+||++||+ |++.+..
T Consensus 406 AsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 406 ASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred ccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 688999999999999999996665 3599999999999999999999999998 7776654
No 51
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.2e-13 Score=140.95 Aligned_cols=67 Identities=27% Similarity=0.476 Sum_probs=56.0
Q ss_pred CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541 203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 269 (461)
Q Consensus 203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 269 (461)
++...+.. .+.++|.||+|+++|++|+|+|+|++...++.+|||||+|+|..|+.|++++.+|+.++
T Consensus 292 G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 292 GTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 44444544 35799999999999999999999998654456899999999999999999999887664
No 52
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=3.2e-13 Score=139.49 Aligned_cols=119 Identities=26% Similarity=0.614 Sum_probs=90.7
Q ss_pred eeeccCCCCCCccccc---------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 012541 139 FETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 197 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------------ 197 (461)
...|+.|+|+|..... ...+|+.|+|.|.+.. ..|+.|+|.|.+...
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 232 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGAT 232 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCCC
Confidence 4578888888864321 2367888888887643 568888888875443
Q ss_pred ------------------------------------------------eccccCCceEEee-cceEEEEeCCCCCCCCEE
Q 012541 198 ------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATM 228 (461)
Q Consensus 198 ------------------------------------------------~C~~C~G~g~v~~-~k~l~V~IP~Gv~~G~~i 228 (461)
.=..|++...+.. ...++|.||+|+++|++|
T Consensus 233 ~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i 312 (365)
T PRK14290 233 DNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL 312 (365)
T ss_pred CCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence 0112245555554 457999999999999999
Q ss_pred EEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541 229 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 269 (461)
Q Consensus 229 ~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 269 (461)
+|+|+|++...+..+|||||+|+|..|+.|++++.+|+.++
T Consensus 313 ri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 313 KIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999998665557899999999999999999999988764
No 53
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.4e-13 Score=138.95 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=55.8
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 269 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 269 (461)
++...+.. ...++|+||+|+++|++++|+|+|.+...+...|||||+|+|..|+.+++++.+|+.++
T Consensus 281 G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 281 GADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 55555544 34589999999999999999999998655556899999999999999999998887665
No 54
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=6.9e-13 Score=137.05 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=56.4
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeee
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 270 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~ 270 (461)
++...+.. ...++|.||+|+++|++|+|+|+|++...+..+|||||+|+|..|+.|.++..+|+..+.
T Consensus 280 G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 280 GAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred CCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 55555554 345799999999999999999999986555578999999999999999999888776644
No 55
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.3e-12 Score=135.22 Aligned_cols=68 Identities=26% Similarity=0.501 Sum_probs=56.3
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeee
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 270 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~ 270 (461)
++...+.. ...++|.||+|+++|++++|+|+|.+...++..|||||+|+|..|+.|.+++.+|+.++.
T Consensus 278 G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~ 346 (371)
T PRK10767 278 GGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFE 346 (371)
T ss_pred CCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 44444533 346899999999999999999999986555678999999999999999999988877653
No 56
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.9e-12 Score=133.69 Aligned_cols=67 Identities=19% Similarity=0.434 Sum_probs=54.8
Q ss_pred CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541 203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 269 (461)
Q Consensus 203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 269 (461)
++.-.+.. .+.++|.||+|+++|++|+|+|+|++...+...|||||+|+|..|+.|.+++..|+..+
T Consensus 282 G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l 350 (365)
T PRK14285 282 GKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350 (365)
T ss_pred CCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 45555555 35799999999999999999999998655555799999999999999998887665543
No 57
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.32 E-value=1.9e-12 Score=98.73 Aligned_cols=46 Identities=50% Similarity=0.574 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC--ChhhHHHHHHHHHHHhhcccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINK--SPGAEEKFKEISSAYEVLSDDEK 49 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~--~~~aeekFkeI~eAYEVLsD~~K 49 (461)
+++++|++||++|+++||||+++ .+.+++.|++|++||++|+||.+
T Consensus 13 ~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 13 ASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 57899999999999999999998 57899999999999999999864
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.5e-12 Score=132.03 Aligned_cols=77 Identities=35% Similarity=0.522 Sum_probs=62.6
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCC-C-hhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccc
Q 012541 2 FVRMPRCRRSRPLTESLLYHPDINK-S-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79 (461)
Q Consensus 2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~-~-~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d 79 (461)
+.++.-+|++|||++|+.||||+|. + .+||.+|+||.+||.+||||.||..||. |.. +... +++++++||++
T Consensus 383 ~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~----~~~~a~~dp~~ 456 (486)
T KOG0550|consen 383 RNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEV----GSGGAGFDPFN 456 (486)
T ss_pred hhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhh----cCCCcCcChhh
Confidence 3567789999999999999999997 3 7899999999999999999999999997 221 1111 12236789999
Q ss_pred ccccc
Q 012541 80 LYSAF 84 (461)
Q Consensus 80 ~F~~~ 84 (461)
+|..|
T Consensus 457 ~~~a~ 461 (486)
T KOG0550|consen 457 IFRAF 461 (486)
T ss_pred hhhhc
Confidence 98887
No 59
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=4.9e-12 Score=131.00 Aligned_cols=63 Identities=27% Similarity=0.555 Sum_probs=50.2
Q ss_pred CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541 203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 265 (461)
Q Consensus 203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 265 (461)
++...+.. .+.++|.||+|+++|++|+|+|+|++...+..+|||||+|+|..|..+.-+...|
T Consensus 281 G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~ 345 (372)
T PRK14300 281 GGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQREL 345 (372)
T ss_pred CCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 45555555 3589999999999999999999999865556789999999999998765544433
No 60
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=3.8e-12 Score=131.83 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=52.7
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 268 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 268 (461)
++...+.. ...++|.||+|+++|++++|+|+|.+...++..|||||+|+|..|+.+..+..+|+..
T Consensus 280 G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 280 GDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred CCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 55555544 3459999999999999999999999876555689999999999998877666555444
No 61
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=4.6e-12 Score=132.01 Aligned_cols=66 Identities=24% Similarity=0.497 Sum_probs=53.4
Q ss_pred CCceEEee-c--ceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe
Q 012541 203 GGNGEVQS-K--RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 268 (461)
Q Consensus 203 ~G~g~v~~-~--k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 268 (461)
++...+.. . ..++|+||+|+++|++++|+|+|++...+..+|||||+|+|..++.++.+..+|+..
T Consensus 294 G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 294 GMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred CCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 55555544 2 679999999999999999999999865555789999999999998887777665544
No 62
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=5e-12 Score=130.84 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=53.9
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 269 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 269 (461)
++...+.. ...++|+||+|+++|++++|+|+|.+...++..|||||+|+|..|+.++++...|+..+
T Consensus 278 G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 278 GDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 55555554 34589999999999999999999998655556899999999999998887776655443
No 63
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=6.4e-12 Score=130.40 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=48.8
Q ss_pred CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541 203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 263 (461)
Q Consensus 203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~ 263 (461)
++...+.. .+.++|.||+|+++|++++|+|+|.+...++..|||||+|+|..+..+..+..
T Consensus 279 G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk 341 (378)
T PRK14278 279 GTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDI 341 (378)
T ss_pred CCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence 55555554 46799999999999999999999998655566899999999998876544443
No 64
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.28 E-value=5.8e-12 Score=129.69 Aligned_cols=55 Identities=25% Similarity=0.535 Sum_probs=47.9
Q ss_pred ceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceE
Q 012541 212 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 266 (461)
Q Consensus 212 k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 266 (461)
..++|.||+|+++|++++|+|+|++...+..+|||||+|+|..++.++++..+++
T Consensus 293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999999999998665557899999999999998887776554
No 65
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.27 E-value=5.6e-12 Score=94.32 Aligned_cols=44 Identities=50% Similarity=0.613 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHHHHhhccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS-PGAEEKFKEISSAYEVLSD 46 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~aeekFkeI~eAYEVLsD 46 (461)
-.++++|++||++|+++||||++++ +.+++.|++|++||+||+|
T Consensus 11 ~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 11 DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999986 7899999999999999997
No 66
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=9.1e-12 Score=129.36 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=48.8
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccc
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 264 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~D 264 (461)
++...+.. ...++|.||+|+++|++++|+|+|++...+..+|||||+|+|..+..+..+...
T Consensus 286 G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ 348 (380)
T PRK14276 286 GDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKE 348 (380)
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 55555554 345899999999999999999999986555568999999999988765544433
No 67
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=1.3e-11 Score=127.62 Aligned_cols=116 Identities=29% Similarity=0.547 Sum_probs=85.7
Q ss_pred eeeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeee--------------
Q 012541 138 CFETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH-------------- 198 (461)
Q Consensus 138 r~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~-------------- 198 (461)
....|+.|+|+|.... ....+|+.|.|+|.++. ..|+.|+|.|.+....
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 3567999999996422 23468999999998753 5699999988764430
Q ss_pred -----------------------------------------------ccccCCceEEee--cceEEEEeCCCCCCCCEEE
Q 012541 199 -----------------------------------------------CRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 229 (461)
Q Consensus 199 -----------------------------------------------C~~C~G~g~v~~--~k~l~V~IP~Gv~~G~~i~ 229 (461)
=..|++.-.+.. .+.++|.||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 112344444544 2468999999999999999
Q ss_pred EcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541 230 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 265 (461)
Q Consensus 230 l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 265 (461)
|+|+|.+...+...|||||+|+|..|+.+..+...+
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~ 338 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQEL 338 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999865444569999999999998776655443
No 68
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=1.1e-11 Score=129.38 Aligned_cols=113 Identities=29% Similarity=0.497 Sum_probs=82.5
Q ss_pred eeeccCCCCCCccccc---------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 012541 139 FETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 197 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------------ 197 (461)
...|+.|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+...
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 246 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGVQ 246 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCCC
Confidence 4679999999865321 2467999999998753 468888888875432
Q ss_pred --------------------------------------------------eccccCCceEEee-cceEEEEeCCCCCCCC
Q 012541 198 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 226 (461)
Q Consensus 198 --------------------------------------------------~C~~C~G~g~v~~-~k~l~V~IP~Gv~~G~ 226 (461)
.-..|++...+.. ...++|+||+|+++|+
T Consensus 247 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~ 326 (397)
T PRK14281 247 DGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPET 326 (397)
T ss_pred CCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCc
Confidence 0112255555554 4458999999999999
Q ss_pred EEEEcccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541 227 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 263 (461)
Q Consensus 227 ~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~ 263 (461)
+++|+|+|.+...++..|||||+|+|..+..+..+..
T Consensus 327 ~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk 363 (397)
T PRK14281 327 MLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDK 363 (397)
T ss_pred EEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence 9999999998655556899999999998876544443
No 69
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.3e-11 Score=127.88 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=49.9
Q ss_pred CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceE
Q 012541 203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 266 (461)
Q Consensus 203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 266 (461)
++...+.. .+.++|+||+|+++|++++|+|+|.+...+...|||||+|+|..+..+..+..+|+
T Consensus 286 G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 286 GAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred CCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 44444544 35699999999999999999999998655556799999999998877655554443
No 70
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.2e-11 Score=128.24 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=55.2
Q ss_pred cCCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCC-CCCccEEEEEEEEecccccccccceEEee
Q 012541 202 CGGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLFSKI 269 (461)
Q Consensus 202 C~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g-~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 269 (461)
|+++-.+.. ...++|.||+|+++|++++|+|+|.+...+ +..|||||+|+|..|+.+++++.+|+..+
T Consensus 282 ~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 282 LGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 355555555 345899999999999999999999986443 35799999999999999999888877654
No 71
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.4e-11 Score=127.78 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=48.3
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccc
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 264 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~D 264 (461)
++...+.. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|..+..+..+...
T Consensus 283 G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~ 345 (376)
T PRK14280 283 GDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKE 345 (376)
T ss_pred CCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 45555554 345899999999999999999999986555568999999999988765544433
No 72
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.5e-11 Score=128.06 Aligned_cols=112 Identities=26% Similarity=0.561 Sum_probs=81.6
Q ss_pred eeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeee---------------
Q 012541 139 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH--------------- 198 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~--------------- 198 (461)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+....
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 257 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQR 257 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcE
Confidence 467999999987532 23578999999998754 5699999988764320
Q ss_pred -----------------------------------------------ccccCCceEEee-cceEEEEeCCCCCCCCEEEE
Q 012541 199 -----------------------------------------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI 230 (461)
Q Consensus 199 -----------------------------------------------C~~C~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l 230 (461)
=..|++...+.. ...++|+||+|+++|++|+|
T Consensus 258 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri 337 (392)
T PRK14279 258 IRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRV 337 (392)
T ss_pred EEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEE
Confidence 111234444443 34589999999999999999
Q ss_pred cccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541 231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 263 (461)
Q Consensus 231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~ 263 (461)
+|+|++. .++.+|||||+|+|..+..+..+..
T Consensus 338 ~g~G~p~-~~~~~GDL~I~~~v~~P~~Ls~~q~ 369 (392)
T PRK14279 338 RGRGVPK-RSGGAGDLLVTVKVAVPPNLDGAAA 369 (392)
T ss_pred CCCCCCC-CCCCCCCEEEEEEEECCCCCCHHHH
Confidence 9999985 3456899999999998876544433
No 73
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.6e-12 Score=116.58 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541 2 FVRMPRCRRSRPLTESLLYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61 (461)
Q Consensus 2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~ 61 (461)
+.++.+|||+|||.|.+|||||++|+ .+.|+.|..|+.||+.|+|++.|..|-.||+...
T Consensus 109 pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 109 PGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred CCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 46789999999999999999999997 6778889999999999999999999999998653
No 74
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.3e-11 Score=126.45 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=48.1
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 263 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~ 263 (461)
++...+.. ...++|.||+|+++|++++|+|+|.+...++..|||||+|+|.-+..+..+..
T Consensus 288 G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~ 349 (380)
T PRK14297 288 GTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQK 349 (380)
T ss_pred CCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHH
Confidence 44555554 34589999999999999999999998655566899999999998876544443
No 75
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3.1e-11 Score=124.99 Aligned_cols=62 Identities=13% Similarity=0.354 Sum_probs=47.3
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCC-CCCCCccEEEEEEEEecccccccccc
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDR-RRSLAGDLFVALHVDEKQGIHRDGLN 264 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~-~g~~~GDL~V~i~v~~h~~f~R~G~D 264 (461)
+++-.+.+ ...++|.||+|+++|++++|+|+|.+.. ..+..|||||+|+|.-+..+..+...
T Consensus 290 G~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~ 353 (372)
T PRK14296 290 GNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKE 353 (372)
T ss_pred CCEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence 55555554 3458999999999999999999999733 23457999999999988765544433
No 76
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.6e-11 Score=126.31 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=47.6
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccccccc
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD 261 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~ 261 (461)
++...+.. ...++|.||+|+++|++++|+|+|.+...++.+|||||+|+|.-+.....+
T Consensus 294 G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~ 353 (386)
T PRK14289 294 GGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKE 353 (386)
T ss_pred CCeEEeecCCceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHH
Confidence 55555555 456899999999999999999999986655678999999999987654433
No 77
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3e-11 Score=125.79 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=47.7
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccc
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 264 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~D 264 (461)
++...+.. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|..+..+.-+..+
T Consensus 295 G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~ 357 (386)
T PRK14277 295 GGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKE 357 (386)
T ss_pred CCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence 44545544 345899999999999999999999986555567999999999988765444433
No 78
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=3.7e-11 Score=124.46 Aligned_cols=65 Identities=20% Similarity=0.375 Sum_probs=51.2
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEE
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFS 267 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~ 267 (461)
++...+.. ....+|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.+..+...|+.
T Consensus 278 G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 278 GGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred CCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 44545553 334589999999999999999999987656678999999999999887766655443
No 79
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=4.4e-11 Score=124.52 Aligned_cols=114 Identities=27% Similarity=0.568 Sum_probs=81.2
Q ss_pred eeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 012541 139 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 197 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~---------------- 197 (461)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+...
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 250 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQR 250 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCCE
Confidence 357888888886422 23467888888887653 468888888765432
Q ss_pred ----------------------------------------------eccccCCceEEee--cceEEEEeCCCCCCCCEEE
Q 012541 198 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 229 (461)
Q Consensus 198 ----------------------------------------------~C~~C~G~g~v~~--~k~l~V~IP~Gv~~G~~i~ 229 (461)
.=..+++...+.. .+.++|.||+|+++|++|+
T Consensus 251 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir 330 (389)
T PRK14295 251 IRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR 330 (389)
T ss_pred EEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence 0111244545544 3479999999999999999
Q ss_pred EcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541 230 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 265 (461)
Q Consensus 230 l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 265 (461)
|+|+|.+. .++.+|||||+|+|.-+....-+...|
T Consensus 331 i~G~G~p~-~~~~~GDL~i~~~v~~P~~Ls~~qk~~ 365 (389)
T PRK14295 331 VRGKGAVR-KDGTRGDLLVTVEVAVPKDLSGKAREA 365 (389)
T ss_pred ECCCCcCC-CCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 99999986 345689999999999887655444333
No 80
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-11 Score=118.01 Aligned_cols=53 Identities=30% Similarity=0.411 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
++..+|.+|||+||++||||+|+++++.+.|+.|++|||+|.|.+.|..||-+
T Consensus 45 a~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 45 ANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred ccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 35679999999999999999999999999999999999999999999999964
No 81
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=5.9e-11 Score=123.27 Aligned_cols=63 Identities=25% Similarity=0.446 Sum_probs=48.3
Q ss_pred CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541 203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 265 (461)
Q Consensus 203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 265 (461)
++...+.. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|..+.....+...|
T Consensus 286 G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~l 349 (378)
T PRK14283 286 GDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKEL 349 (378)
T ss_pred CCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHH
Confidence 44444553 3478999999999999999999999865555689999999999886654444333
No 82
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.15 E-value=3.3e-11 Score=111.71 Aligned_cols=53 Identities=25% Similarity=0.168 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC--h----hhHHHHHHHHHHHhhcccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS--P----GAEEKFKEISSAYEVLSDDEKRSVYDR 55 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~----~aeekFkeI~eAYEVLsD~~KR~~YD~ 55 (461)
-.++.+|+++|++|+++||||++.+ + .|.++|++||+||+||+||.+|+.|+-
T Consensus 14 ~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 14 DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 3578999999999999999999753 2 267799999999999999999999984
No 83
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.14 E-value=8.7e-11 Score=123.20 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=45.7
Q ss_pred cCCceEEee--cceEEEEeCCC--CCCCCEEEEcccccCCCCC-CCCccEEEEEEEEec--cccc
Q 012541 202 CGGNGEVQS--KRSMKVVIPPG--VSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEK--QGIH 259 (461)
Q Consensus 202 C~G~g~v~~--~k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g-~~~GDL~V~i~v~~h--~~f~ 259 (461)
|++.-.+.. .+.++|+||+| +++|++++|+|+|.+...+ +..|||||+|+|.-+ ..+.
T Consensus 289 lG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls 353 (421)
T PTZ00037 289 TGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFT 353 (421)
T ss_pred cCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCC
Confidence 456655554 34699999999 9999999999999985443 357999999999987 5443
No 84
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.13 E-value=4.1e-11 Score=111.10 Aligned_cols=54 Identities=24% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCC-h-----hhHHHHHHHHHHHhhcccccccccccc
Q 012541 2 FVRMPRCRRSRPLTESLLYHPDINKS-P-----GAEEKFKEISSAYEVLSDDEKRSVYDR 55 (461)
Q Consensus 2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~-~-----~aeekFkeI~eAYEVLsD~~KR~~YD~ 55 (461)
|-..+.+|+++||+|+++||||++.. + .+.++|+.||+||+||+||.+|+.|+-
T Consensus 16 f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 16 FRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 34568999999999999999999863 2 266789999999999999999999995
No 85
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.13 E-value=4.9e-11 Score=109.08 Aligned_cols=53 Identities=25% Similarity=0.202 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
-.+++|+++|++|+++||||+.+.. .+.++|+.||+||+||+||.+|+.|+--
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 4578999999999999999985421 2778999999999999999999999863
No 86
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=4.6e-11 Score=110.19 Aligned_cols=53 Identities=25% Similarity=0.240 Sum_probs=45.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCCh----hhHHHHHHHHHHHhhcccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDR 55 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~----~aeekFkeI~eAYEVLsD~~KR~~YD~ 55 (461)
-.++.+|++||++|+++||||+++++ .+.+.|..||+||+||+||.+|+.|+-
T Consensus 15 ~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 15 NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 35789999999999999999998742 234568899999999999999999976
No 87
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=2.4e-10 Score=118.80 Aligned_cols=54 Identities=35% Similarity=0.536 Sum_probs=44.4
Q ss_pred CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecc
Q 012541 203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 256 (461)
Q Consensus 203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~ 256 (461)
++...+.. .+.++|.||+|+++|++|+|+|+|++...+..+|||||+|+|..+.
T Consensus 291 G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 291 GTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred CCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 44444544 3569999999999999999999999866555689999999999775
No 88
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.08 E-value=1e-10 Score=108.76 Aligned_cols=53 Identities=23% Similarity=0.119 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC-hhh-----HHHHHHHHHHHhhcccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS-PGA-----EEKFKEISSAYEVLSDDEKRSVYDR 55 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~a-----eekFkeI~eAYEVLsD~~KR~~YD~ 55 (461)
-..+.+|+++|++|+++||||+++. +++ .++++.||+||++|+||.+|+.|+-
T Consensus 19 ~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 19 ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3578999999999999999999863 333 3456899999999999999999994
No 89
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.7e-10 Score=115.27 Aligned_cols=53 Identities=36% Similarity=0.473 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
.|-.+||++||+||+--|||||..+.|+|-||.++.|||||+|++||+.||.-
T Consensus 247 ~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 247 CSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 36689999999999999999999999999999999999999999999999973
No 90
>PHA02624 large T antigen; Provisional
Probab=98.89 E-value=1.1e-09 Score=117.67 Aligned_cols=47 Identities=30% Similarity=0.351 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccc
Q 012541 5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD 54 (461)
Q Consensus 5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD 54 (461)
+..+||+|||+||++||||++. ++++|++|++||++|+|+.+|..|+
T Consensus 26 s~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 26 NLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred CHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 7899999999999999999974 5689999999999999999999993
No 91
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.84 E-value=3e-09 Score=91.77 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLS 45 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLs 45 (461)
-++.++|++|||+||++||||++ ++.+.|++|++|||||.
T Consensus 76 ~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 76 TASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 36789999999999999999986 34578999999999994
No 92
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=9.5e-09 Score=103.19 Aligned_cols=72 Identities=29% Similarity=0.452 Sum_probs=64.0
Q ss_pred ccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCC
Q 012541 258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDI 336 (461)
Q Consensus 258 f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~l 336 (461)
+.|+|.||++++.|||.||++|+++.| +++|. ++|+||+|+++|++++++|+|++. |||||+|+|+-+..+
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f 196 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF 196 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence 357899999999999999999999998 78884 689999999999999999999862 999999999876654
Q ss_pred C
Q 012541 337 S 337 (461)
Q Consensus 337 s 337 (461)
.
T Consensus 197 ~ 197 (291)
T PRK14299 197 R 197 (291)
T ss_pred E
Confidence 3
No 93
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.80 E-value=8.6e-09 Score=88.33 Aligned_cols=61 Identities=36% Similarity=0.760 Sum_probs=50.1
Q ss_pred eeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEee
Q 012541 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS 210 (461)
Q Consensus 138 r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~ 210 (461)
..+.|..|+|+|.. +|+.|+|+|.+...+ .+.+++..+|+.|+|+|+. .|..|.|+|++..
T Consensus 40 ~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 45689999999983 899999999987543 2345667899999999985 4999999998754
No 94
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.76 E-value=5.3e-09 Score=85.12 Aligned_cols=49 Identities=29% Similarity=0.590 Sum_probs=38.2
Q ss_pred ceEEEEeCCCCCCCCEEEEcccccCCCCCC-CCccEEEEEEEEecccccc
Q 012541 212 RSMKVVIPPGVSNGATMQIRGEGNFDRRRS-LAGDLFVALHVDEKQGIHR 260 (461)
Q Consensus 212 k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~-~~GDL~V~i~v~~h~~f~R 260 (461)
+.++|.||+|+++|++++|+|+|.+...+. ..|||||+++|.-+..+..
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 578999999999999999999999765554 7999999999997776553
No 95
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.61 E-value=1.2e-07 Score=96.03 Aligned_cols=74 Identities=22% Similarity=0.464 Sum_probs=61.3
Q ss_pred ccccceEEeeecCHHHHHcCCeeEE----eeeC--C--------eEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEE
Q 012541 260 RDGLNLFSKISVDYTEAILGTSMEV----ETVE--G--------MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHL 325 (461)
Q Consensus 260 R~G~DL~~~~~Isl~eAllG~~i~V----~tld--G--------~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~ 325 (461)
+.|.||++++.|+|.||+.|+...| ++++ | .++|+||+|+++|++++++|+|+|...+ ..+||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~ 193 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW 193 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence 4688999999999999999996544 4444 3 3578899999999999999999996543 4689999
Q ss_pred EEEEEEcCCC
Q 012541 326 FIVNVLIPKD 335 (461)
Q Consensus 326 V~f~V~~P~~ 335 (461)
|+|+|. |..
T Consensus 194 v~i~v~-ph~ 202 (306)
T PRK10266 194 LVIHIA-PHP 202 (306)
T ss_pred EEEEEc-CCC
Confidence 999999 754
No 96
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.47 E-value=6.8e-08 Score=99.07 Aligned_cols=58 Identities=31% Similarity=0.483 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC------hhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~------~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~ 61 (461)
.|-++||++||+|.+|||||+-+. .+.||++++|+.||+.|+|+..|+.|=.||....
T Consensus 110 ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 110 TSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred CcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 577899999999999999998763 4689999999999999999999999999997643
No 97
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-07 Score=105.10 Aligned_cols=39 Identities=36% Similarity=0.534 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcc
Q 012541 5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLS 45 (461)
Q Consensus 5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLs 45 (461)
-|.+||++|++||+|||||+|| +-.|+|..++.|||.|+
T Consensus 1298 ~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1298 KPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred cHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 4789999999999999999995 77899999999999999
No 98
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=7.2e-07 Score=90.18 Aligned_cols=56 Identities=30% Similarity=0.481 Sum_probs=46.2
Q ss_pred cccCCceEEee--cceEEEEeCCC--CCCCCEEEEcccccCCCCCCCCccEEEEEEEEecc
Q 012541 200 RRCGGNGEVQS--KRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 256 (461)
Q Consensus 200 ~~C~G~g~v~~--~k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~ 256 (461)
..|.+...+.+ .+.+++.++|| +.+|+++++.|+|++..... .|||||.+.|+.++
T Consensus 265 al~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 265 ALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred ccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 34555555543 57899999999 99999999999999976555 99999999999876
No 99
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.36 E-value=4e-07 Score=84.57 Aligned_cols=52 Identities=25% Similarity=0.167 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccc
Q 012541 2 FVRMPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVY 53 (461)
Q Consensus 2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~Y 53 (461)
|--.+..+++.|++|.+++|||+.... -|.+.=..||+||.+|+||-+|+.|
T Consensus 14 F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~Y 71 (173)
T PRK01773 14 FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEA 71 (173)
T ss_pred CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHH
Confidence 345688999999999999999987532 2445567999999999999999999
No 100
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.1e-06 Score=85.11 Aligned_cols=54 Identities=33% Similarity=0.411 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC---ChhhHHHHHHHHHHHhhccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~---~~~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
-+.|.+|.+|+++...+||||+.. +.+..+-|+-|+.|||||+|+.+|.+||.-
T Consensus 57 ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 57 KAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred CCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 356889999999999999999863 356678899999999999999999999974
No 101
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.15 E-value=1.8e-06 Score=80.77 Aligned_cols=50 Identities=26% Similarity=0.602 Sum_probs=45.2
Q ss_pred eeecCCCCCCccEEEe--eeccccCCceEEeecceEEEEeCCCCCCCCEEEEc
Q 012541 181 QVSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 231 (461)
Q Consensus 181 ~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~ 231 (461)
...+|+.|+|+|+++. .+|+.|+|+|++.....+.+++ .|+.+|++|++.
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 3578999999999997 5799999999999999999999 999999999875
No 102
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.53 E-value=6.3e-05 Score=80.00 Aligned_cols=70 Identities=33% Similarity=0.783 Sum_probs=42.9
Q ss_pred eeccCCCCCCcccccccccCCCcCCccEEEEee--------ecCCcceee-eecCCCCCCccEEEe-eeccccCCceEEe
Q 012541 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQ--------RTPFGLISQ-VSTCSKCGGDGKIII-DHCRRCGGNGEVQ 209 (461)
Q Consensus 140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~--------~~~~g~~~~-~~~C~~C~G~G~~i~-~~C~~C~G~g~v~ 209 (461)
..|+.|+|+|...- ....|+.|+|+|..-... +..+-.+.. ..+|+.|+|+|.+.- ..|+.|+|+|.+.
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 46888888876543 346788888888762111 001111222 347888888887654 4588888887664
Q ss_pred e
Q 012541 210 S 210 (461)
Q Consensus 210 ~ 210 (461)
.
T Consensus 82 ~ 82 (715)
T COG1107 82 T 82 (715)
T ss_pred e
Confidence 4
No 103
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.45 E-value=7.4e-05 Score=58.39 Aligned_cols=43 Identities=33% Similarity=0.848 Sum_probs=31.0
Q ss_pred eeeccCCCCCCcccc---------cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 012541 139 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 192 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 192 (461)
...|+.|+|+|.... ....+|+.|+|+|.++ . ..+|+.|+|.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----------~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----------KDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----------SSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----------CCCCCCCCCcC
Confidence 458999999998743 2568899999999986 1 26899999986
No 104
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00014 Score=67.89 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSV 52 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~ 52 (461)
-+-++|++.||+|.+--|||+|+| +.|..-|--+..||..|-|+.-|+.
T Consensus 65 v~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 65 VTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred CCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 356899999999999999999995 6789999999999999999985543
No 105
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00022 Score=67.96 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHh-hcccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYE-VLSDD 47 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYE-VLsD~ 47 (461)
++..++|.||++||++||||-..+....++|..|-+||. ||+..
T Consensus 59 ~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 59 ADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred CchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999998887778899999999998 99753
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0012 Score=70.67 Aligned_cols=48 Identities=38% Similarity=0.794 Sum_probs=36.2
Q ss_pred eeeeccCCCCCCccccc------------------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 012541 138 CFETCDSCGGTGAKSSN------------------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 196 (461)
Q Consensus 138 r~~~C~~C~GsG~~~~~------------------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~ 196 (461)
....|+.|+|+|....- .-..|+.|+|.|.+.. ..+|+.|+|+|++.+
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-----------~~~c~~c~G~gkv~~ 82 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-----------YDTCPECGGTGKVLT 82 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE-----------EeecccCCCceeEEe
Confidence 35679999999975321 2347999999998754 268999999998765
No 107
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.56 E-value=0.0018 Score=55.82 Aligned_cols=41 Identities=32% Similarity=0.748 Sum_probs=32.6
Q ss_pred eccCCCCCCcccc------cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 012541 141 TCDSCGGTGAKSS------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 196 (461)
Q Consensus 141 ~C~~C~GsG~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~ 196 (461)
.|+.|+|+|.... .....|+.|+|+|.+ .|..|+|.|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence 8999999997532 125689999999963 3999999998765
No 108
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0063 Score=60.74 Aligned_cols=30 Identities=33% Similarity=0.854 Sum_probs=16.3
Q ss_pred cCCCCCCccEEEeeeccccCCceEEeecceEEE
Q 012541 184 TCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV 216 (461)
Q Consensus 184 ~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V 216 (461)
.|++|.|.|. .+|.+|.|.|.+..-..+.|
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV 276 (406)
T KOG2813|consen 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVV 276 (406)
T ss_pred cCCcccCCCC---cccccccCccceeeeEEEEE
Confidence 3445555443 35777777776655444433
No 109
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.68 E-value=0.0085 Score=56.29 Aligned_cols=30 Identities=30% Similarity=0.643 Sum_probs=13.1
Q ss_pred eeeccCCCCCCcccccccccCCCcCCccEEE
Q 012541 139 FETCDSCGGTGAKSSNCIQSCKACWGRGGVL 169 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~ 169 (461)
...|+.|+|+|...... ..|+.|+|+|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~-~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ-RECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCC-CCCCCCCCccEEe
Confidence 44455555555432211 3444444444443
No 110
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0069 Score=56.40 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccccc
Q 012541 7 RCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 55 (461)
Q Consensus 7 ~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~ 55 (461)
+.+...|+.++++||||+.... .+-+++.+++.||.+|-||-+|++|=.
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred hHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3567889999999999988632 134579999999999999999999854
No 111
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.044 Score=46.50 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDD 47 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~ 47 (461)
.-++.||+|+|+.=.--|||+..+|=-.. +|||||++|...
T Consensus 68 ~~k~KikeaHrriM~~NHPD~GGSPYlAs---KINEAKdlLe~~ 108 (112)
T KOG0723|consen 68 LDKDKIKEAHRRIMLANHPDRGGSPYLAS---KINEAKDLLEGT 108 (112)
T ss_pred ccHHHHHHHHHHHHHcCCCcCCCCHHHHH---HHHHHHHHHhcc
Confidence 45789999999999999999988775443 499999999754
No 112
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.016 Score=57.91 Aligned_cols=59 Identities=31% Similarity=0.691 Sum_probs=42.6
Q ss_pred eeeccCCCCCCcccc--cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEe
Q 012541 139 FETCDSCGGTGAKSS--NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ 209 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~ 209 (461)
..+|+.|+|+|...- ..+..|+.|-| +.. -...+-..|..|+|+|+ ..|.+|.|+|..+
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G---~~~------~k~gt~~~C~~C~G~G~---~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTG---VPP------PKIGTHDLCYMCHGRGI---KECHTCKGRGKKP 258 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccC---CCC------CCCCccchhhhccCCCc---ccCCcccCCCCcc
Confidence 568999999996322 35678999988 111 01223467999999996 5799999999875
No 113
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.033 Score=50.39 Aligned_cols=49 Identities=29% Similarity=0.319 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhCCCCC--CC----hhhHHHHHHHHHHHhhccccccccccc
Q 012541 6 PRCRRSRPLTESLLYHPDIN--KS----PGAEEKFKEISSAYEVLSDDEKRSVYD 54 (461)
Q Consensus 6 ~~~Ir~Ayr~LA~kyHPD~N--~~----~~aeekFkeI~eAYEVLsD~~KR~~YD 54 (461)
|..+.--|.-..++.|||+- +. .-|.+.=.++|+||.+|.||-+|+.|=
T Consensus 24 p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 24 PDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred cchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44445577888899999973 21 347788999999999999999999994
No 114
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.052 Score=55.57 Aligned_cols=56 Identities=30% Similarity=0.300 Sum_probs=47.3
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCCC-----ChhhHHHHHHHHHHHhhccccccccccccc
Q 012541 1 MFVRMPRCRRSRPLTESLLYHPDINK-----SPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 1 ~~~~~~~~Ir~Ayr~LA~kyHPD~N~-----~~~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
|.+++...|+.+|++.+.++|||+-. .-..++-|++|.+||+||++.++|..+|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 1 RGLASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred CCcccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 67889999999999999999999763 225677899999999999998877776653
No 115
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=0.29 Score=49.35 Aligned_cols=58 Identities=34% Similarity=0.744 Sum_probs=38.5
Q ss_pred eecceeeeeEEeeeeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 012541 126 SIFGGQRGIEVSCFETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 196 (461)
Q Consensus 126 ~~~G~~k~i~~~r~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~ 196 (461)
..+|.. .........|..|.|+|.... -...+|..|.|.|.+.. ..|..|.|.|.+..
T Consensus 169 t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 169 TCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRR 231 (288)
T ss_pred cccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhh
Confidence 334433 444556778999999993222 12237999999998764 34999999995544
No 116
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.63 E-value=1.3 Score=43.99 Aligned_cols=45 Identities=29% Similarity=0.621 Sum_probs=23.4
Q ss_pred eeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEE
Q 012541 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 194 (461)
Q Consensus 140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 194 (461)
-.|..|.|.+. ..|..|+|+=.+... +.......+|..|+=.|-+
T Consensus 230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~----~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARF------LPCSNCHGSCKVHEE----EEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcce------EecCCCCCceeeeee----ccCCCcEEECcccCCCCce
Confidence 35666666554 346666666655432 1111223456666666654
No 117
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=80.98 E-value=8.4 Score=35.59 Aligned_cols=26 Identities=12% Similarity=0.387 Sum_probs=18.9
Q ss_pred CeeEEeeeCCeEEEEeCCCC-CCCCEEEEcc
Q 012541 280 TSMEVETVEGMKDLRIPSGV-QPGDTVKLQQ 309 (461)
Q Consensus 280 ~~i~V~tldG~~~l~Ip~g~-q~G~~~~l~g 309 (461)
+++.||-| .+.||||+ +.|..-.|.|
T Consensus 72 a~i~IPEl----~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 72 ATIRIPEL----GIKIEPGPASQGYISNIEG 98 (163)
T ss_pred cEEEccce----eEEecCCCcCCceEEehHh
Confidence 45667764 58899987 7888777744
No 118
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=79.96 E-value=1.2 Score=52.51 Aligned_cols=66 Identities=26% Similarity=0.469 Sum_probs=42.1
Q ss_pred ccceee--------cceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccE
Q 012541 122 SFEESI--------FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 193 (461)
Q Consensus 122 slee~~--------~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~ 193 (461)
++.+|+ .+...++++. ...|+.|+.... ...|+.|+..=.. ...|+.|+..=.
T Consensus 643 ~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGaev~ 703 (1337)
T PRK14714 643 DVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAEVP 703 (1337)
T ss_pred cHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCccC
Confidence 456666 5555566664 578999987643 2489999876321 247999987311
Q ss_pred ---EEeeeccccCCce
Q 012541 194 ---IIIDHCRRCGGNG 206 (461)
Q Consensus 194 ---~i~~~C~~C~G~g 206 (461)
.....|+.|+..-
T Consensus 704 ~des~a~~CP~CGtpl 719 (1337)
T PRK14714 704 PDESGRVECPRCDVEL 719 (1337)
T ss_pred CCccccccCCCCCCcc
Confidence 0023699997543
No 119
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.11 E-value=2.1 Score=42.55 Aligned_cols=38 Identities=34% Similarity=0.719 Sum_probs=32.2
Q ss_pred ccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe--------eeccccCCceEEe
Q 012541 157 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQ 209 (461)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~g~v~ 209 (461)
..|..|+|.+.+ +|..|+|+-++.. ..|..|+-+|.++
T Consensus 230 ~~C~~CGg~rFl---------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL---------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE---------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 579999999875 6999999999988 2599999888764
No 120
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=79.00 E-value=2.1 Score=38.87 Aligned_cols=25 Identities=32% Similarity=0.833 Sum_probs=16.6
Q ss_pred eeccCCCCCCcccccccccCCCcCCccEEEE
Q 012541 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLK 170 (461)
Q Consensus 140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~ 170 (461)
..|..|.|.+. ..|..|+|+=.++.
T Consensus 100 ~~C~~Cgg~rf------v~C~~C~Gs~k~~~ 124 (147)
T cd03031 100 GVCEGCGGARF------VPCSECNGSCKVFA 124 (147)
T ss_pred CCCCCCCCcCe------EECCCCCCcceEEe
Confidence 45777777765 35777777766654
No 121
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=73.72 E-value=12 Score=34.39 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=19.5
Q ss_pred CeeEEeeeCCeEEEEeCCCCCCCCEEEEcc
Q 012541 280 TSMEVETVEGMKDLRIPSGVQPGDTVKLQQ 309 (461)
Q Consensus 280 ~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g 309 (461)
+++.||-| .+.||||++-|.+-.|.|
T Consensus 75 a~i~IPEl----~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 75 ATISIPEL----DLEIPPGPLGGFITTVEG 100 (160)
T ss_pred cEEEeeee----eEEecCCCCCcEEEehHH
Confidence 45667654 688999988888888755
No 122
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=73.22 E-value=1.8 Score=23.33 Aligned_cols=13 Identities=54% Similarity=0.902 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhcc
Q 012541 33 KFKEISSAYEVLS 45 (461)
Q Consensus 33 kFkeI~eAYEVLs 45 (461)
+|.++..||+-|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 6899999999885
No 123
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.36 E-value=2.9 Score=48.79 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=9.5
Q ss_pred EEcCCC-CChhHHHHHHHHH
Q 012541 330 VLIPKD-ISDPERALVEEIA 348 (461)
Q Consensus 330 V~~P~~-ls~~q~~lle~l~ 348 (461)
++=|.. |....++.|.++.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L 874 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVL 874 (924)
T ss_pred EECCCCCCCHHHHHHHHHHH
Confidence 444543 6665555444433
No 124
>PRK04023 DNA polymerase II large subunit; Validated
Probab=70.08 E-value=2.1 Score=49.38 Aligned_cols=64 Identities=25% Similarity=0.605 Sum_probs=41.6
Q ss_pred ccceeec-ceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeecc
Q 012541 122 SFEESIF-GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCR 200 (461)
Q Consensus 122 slee~~~-G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~ 200 (461)
++.+|+. +...++++. ...|+.|.-.+ ....|+.|+..-. ....|+.|.-... ...|+
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te-------------~i~fCP~CG~~~~--~y~CP 667 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTE-------------PVYRCPRCGIEVE--EDECE 667 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCC-------------cceeCccccCcCC--CCcCC
Confidence 4567776 555566654 45899997664 4478999987611 1246999944332 24599
Q ss_pred ccCCce
Q 012541 201 RCGGNG 206 (461)
Q Consensus 201 ~C~G~g 206 (461)
+|+..-
T Consensus 668 KCG~El 673 (1121)
T PRK04023 668 KCGREP 673 (1121)
T ss_pred CCCCCC
Confidence 997653
No 125
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=66.95 E-value=3.7 Score=46.54 Aligned_cols=51 Identities=27% Similarity=0.610 Sum_probs=35.3
Q ss_pred eeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCc
Q 012541 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 205 (461)
Q Consensus 138 r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 205 (461)
....|..|. ....|+.|...=..-+ ....-.|+.|+-. ..+...|+.|++.
T Consensus 434 ~~l~C~~Cg--------~v~~Cp~Cd~~lt~H~--------~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCG--------YIAECPNCDSPLTLHK--------ATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCC--------CcccCCCCCcceEEec--------CCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 467899995 3578999987632211 1123579999877 5566779999875
No 126
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.82 E-value=3 Score=48.65 Aligned_cols=28 Identities=36% Similarity=0.754 Sum_probs=19.4
Q ss_pred cCCCCCCccEEEe---------eeccccCCceEEeec
Q 012541 184 TCSKCGGDGKIII---------DHCRRCGGNGEVQSK 211 (461)
Q Consensus 184 ~C~~C~G~G~~i~---------~~C~~C~G~g~v~~~ 211 (461)
.|+.|.|.|.+.. ..|..|+|+.+..+.
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 4778888777663 258888888766543
No 127
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=65.78 E-value=25 Score=33.32 Aligned_cols=36 Identities=31% Similarity=0.733 Sum_probs=22.6
Q ss_pred cCCCcCCccEE-EEeee-cC-Ccceee-eecCCCCCCccE
Q 012541 158 SCKACWGRGGV-LKTQR-TP-FGLISQ-VSTCSKCGGDGK 193 (461)
Q Consensus 158 ~C~~C~G~G~~-~~~~~-~~-~g~~~~-~~~C~~C~G~G~ 193 (461)
.|+.|++.|.. +.... .| |+-+.. ...|++|+=+-.
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ 41 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSN 41 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccc
Confidence 48888888775 33344 55 444433 468999976543
No 128
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.58 E-value=6 Score=46.32 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=12.2
Q ss_pred EEcCCC-CChhHHHHHHHHHh
Q 012541 330 VLIPKD-ISDPERALVEEIAF 349 (461)
Q Consensus 330 V~~P~~-ls~~q~~lle~l~~ 349 (461)
++=|.. |..+.++.|.+++.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~ 877 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLH 877 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHH
Confidence 566663 77777666555443
No 129
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=61.57 E-value=31 Score=31.74 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=21.2
Q ss_pred cCCCcCCccEEE-EeeecC-Ccceee-eecCCCCCCccE
Q 012541 158 SCKACWGRGGVL-KTQRTP-FGLISQ-VSTCSKCGGDGK 193 (461)
Q Consensus 158 ~C~~C~G~G~~~-~~~~~~-~g~~~~-~~~C~~C~G~G~ 193 (461)
.|+.|+..|... .....| |+-+.. ...|++|+=+-.
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 40 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNN 40 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccc
Confidence 588888777632 233444 343333 468999976533
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=58.07 E-value=9.8 Score=34.49 Aligned_cols=38 Identities=37% Similarity=0.809 Sum_probs=29.5
Q ss_pred cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee---------eccccCCceEE
Q 012541 156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------HCRRCGGNGEV 208 (461)
Q Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~---------~C~~C~G~g~v 208 (461)
...|..|+|.+.+ +|..|+|+-++... .|+.|+-+|.+
T Consensus 99 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARFV---------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCeE---------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 3569999999875 69999999887543 59999877754
No 131
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=57.88 E-value=15 Score=27.19 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=9.2
Q ss_pred ccCCCcCCccEEEE
Q 012541 157 QSCKACWGRGGVLK 170 (461)
Q Consensus 157 ~~C~~C~G~G~~~~ 170 (461)
..||-|+|....++
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 45777877777443
No 132
>PF11181 YflT: Heat induced stress protein YflT
Probab=56.78 E-value=7.5 Score=32.78 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=19.7
Q ss_pred CCCChHHHHHHhhcCCCc--ccceeeeec
Q 012541 386 SVGSWWNSVKCFLGQRQS--QERFASVGV 412 (461)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 412 (461)
...+||++++|||.++.. +++|.++..
T Consensus 54 ~~~~~~d~~~~~f~~~~d~~~~~l~~lGl 82 (103)
T PF11181_consen 54 SEESFWDKIKNFFTSGGDELRSKLESLGL 82 (103)
T ss_pred ccccHHHHHHHhccCCcHHHHHHHHHcCC
Confidence 358999999999993332 377777654
No 133
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=56.09 E-value=3.5 Score=34.62 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=19.5
Q ss_pred ccCCCcCCccEEEEeeecCCc-ceeeeecCCCCCCccEE
Q 012541 157 QSCKACWGRGGVLKTQRTPFG-LISQVSTCSKCGGDGKI 194 (461)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g-~~~~~~~C~~C~G~G~~ 194 (461)
..|..|+|.|.++-..++-.. .+....+|..|.|.|..
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 456677777765433322211 12223467777666653
No 134
>PRK05580 primosome assembly protein PriA; Validated
Probab=55.90 E-value=11 Score=42.50 Aligned_cols=60 Identities=27% Similarity=0.584 Sum_probs=37.3
Q ss_pred ceeeeeEEee-----eeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccC
Q 012541 129 GGQRGIEVSC-----FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCG 203 (461)
Q Consensus 129 G~~k~i~~~r-----~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~ 203 (461)
|...-+-+++ ...|..|.- ...|+.|.+.= +.+. ....-.|+.|+-+ ..+...|+.|+
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~--------~~~C~~C~~~l-~~h~-------~~~~l~Ch~Cg~~-~~~~~~Cp~Cg 428 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGW--------VAECPHCDASL-TLHR-------FQRRLRCHHCGYQ-EPIPKACPECG 428 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcC--------ccCCCCCCCce-eEEC-------CCCeEECCCCcCC-CCCCCCCCCCc
Confidence 4344454554 678999954 46899998732 2221 1123579999754 33455799997
Q ss_pred Cc
Q 012541 204 GN 205 (461)
Q Consensus 204 G~ 205 (461)
+.
T Consensus 429 ~~ 430 (679)
T PRK05580 429 ST 430 (679)
T ss_pred CC
Confidence 75
No 135
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=54.50 E-value=9.4 Score=44.72 Aligned_cols=28 Identities=36% Similarity=0.812 Sum_probs=17.9
Q ss_pred cCCCCCCccEEEee---------eccccCCceEEeec
Q 012541 184 TCSKCGGDGKIIID---------HCRRCGGNGEVQSK 211 (461)
Q Consensus 184 ~C~~C~G~G~~i~~---------~C~~C~G~g~v~~~ 211 (461)
.|+.|.|.|.+..+ .|..|+|..+..+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 47777777765532 47788777665443
No 136
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=53.59 E-value=7.5 Score=43.58 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=31.6
Q ss_pred eeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCc
Q 012541 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 205 (461)
Q Consensus 140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 205 (461)
..|+.|+-. .......|+.|+..-. ...|+.|+-.=..-...|..|+..
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCCc
Confidence 469999654 2334568999954431 146999976644444569999754
No 137
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=53.29 E-value=22 Score=31.31 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=15.4
Q ss_pred ceEEEEeCCCCCCCCEEEEccc
Q 012541 212 RSMKVVIPPGVSNGATMQIRGE 233 (461)
Q Consensus 212 k~l~V~IP~Gv~~G~~i~l~G~ 233 (461)
..+++.-+.+++.||.+.+.-.
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEec
Confidence 4566666778888888777543
No 138
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=52.97 E-value=14 Score=23.70 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHhCC
Q 012541 6 PRCRRSRPLTESLLYHP 22 (461)
Q Consensus 6 ~~~Ir~Ayr~LA~kyHP 22 (461)
+++.|.+-|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 57889999999999994
No 139
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=52.65 E-value=12 Score=42.84 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=15.0
Q ss_pred cEEEEEEEEcCCC-CChhH-HHHHHHHHhhcC
Q 012541 323 DHLFIVNVLIPKD-ISDPE-RALVEEIAFLKS 352 (461)
Q Consensus 323 DL~V~f~V~~P~~-ls~~q-~~lle~l~~~~~ 352 (461)
-||| ++=|+. |-.++ +.||+-|.++..
T Consensus 845 TlYi---LDEPTTGLH~~Di~kLl~VL~rLvd 873 (935)
T COG0178 845 TLYI---LDEPTTGLHFDDIKKLLEVLHRLVD 873 (935)
T ss_pred eEEE---eCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 4655 566765 55444 445555655543
No 140
>PRK14873 primosome assembly protein PriA; Provisional
Probab=52.64 E-value=9.9 Score=42.82 Aligned_cols=58 Identities=26% Similarity=0.562 Sum_probs=38.0
Q ss_pred ceeeeeEEe-----eeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccC
Q 012541 129 GGQRGIEVS-----CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCG 203 (461)
Q Consensus 129 G~~k~i~~~-----r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~ 203 (461)
| ..-+-++ ....|..|. ....|+.|.+.=..-+. ...-.|+.|+-.- +...|+.|+
T Consensus 369 g-qvll~lnRrGyap~l~C~~Cg--------~~~~C~~C~~~L~~h~~--------~~~l~Ch~CG~~~--~p~~Cp~Cg 429 (665)
T PRK14873 369 G-PVLVQVPRRGYVPSLACARCR--------TPARCRHCTGPLGLPSA--------GGTPRCRWCGRAA--PDWRCPRCG 429 (665)
T ss_pred C-cEEEEecCCCCCCeeEhhhCc--------CeeECCCCCCceeEecC--------CCeeECCCCcCCC--cCccCCCCc
Confidence 5 5555554 355899995 35789999876443211 1135799998652 466799997
Q ss_pred Cc
Q 012541 204 GN 205 (461)
Q Consensus 204 G~ 205 (461)
+.
T Consensus 430 s~ 431 (665)
T PRK14873 430 SD 431 (665)
T ss_pred CC
Confidence 65
No 141
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=52.01 E-value=14 Score=37.74 Aligned_cols=22 Identities=18% Similarity=0.623 Sum_probs=13.3
Q ss_pred ecCCCCCCccEEEeeeccccCC
Q 012541 183 STCSKCGGDGKIIIDHCRRCGG 204 (461)
Q Consensus 183 ~~C~~C~G~G~~i~~~C~~C~G 204 (461)
-.|+.|.-.=......|+.|+.
T Consensus 213 L~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 213 LHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred EEcCCCCCcccccCccCCCCCC
Confidence 3566666666666666666653
No 142
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.86 E-value=10 Score=41.25 Aligned_cols=52 Identities=29% Similarity=0.510 Sum_probs=32.6
Q ss_pred eeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCce
Q 012541 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 206 (461)
Q Consensus 138 r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g 206 (461)
....|..|.- ...|+.|.+.=..-+. ...-.|+.|+-+ ..+...|+.|++..
T Consensus 212 ~~~~C~~Cg~--------~~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~-~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 212 KNLLCRSCGY--------ILCCPNCDVSLTYHKK--------EGKLRCHYCGYQ-EPIPKTCPQCGSED 263 (505)
T ss_pred CeeEhhhCcC--------ccCCCCCCCceEEecC--------CCeEEcCCCcCc-CCCCCCCCCCCCCe
Confidence 3458999954 4789999765322111 123579999643 33445799998753
No 143
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=49.15 E-value=12 Score=46.69 Aligned_cols=24 Identities=0% Similarity=-0.050 Sum_probs=15.6
Q ss_pred ccEEEEEEEEcCCC-CChhHHHHHHHHH
Q 012541 322 GDHLFIVNVLIPKD-ISDPERALVEEIA 348 (461)
Q Consensus 322 GDL~V~f~V~~P~~-ls~~q~~lle~l~ 348 (461)
+.||| .+=|.. |...+.+.|-+++
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l 1745 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQL 1745 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHH
Confidence 45655 777875 8887766555543
No 144
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=48.94 E-value=5.7 Score=45.23 Aligned_cols=63 Identities=24% Similarity=0.609 Sum_probs=0.0
Q ss_pred cceeecce--eeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeecc
Q 012541 123 FEESIFGG--QRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCR 200 (461)
Q Consensus 123 lee~~~G~--~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~ 200 (461)
+.+|+.-. ..++++- ...|+.|.-.+ ....|+.|+..=.. .-.|+.|+-. +....|+
T Consensus 638 i~~A~~~~~g~i~vei~-~r~Cp~Cg~~t-----~~~~Cp~CG~~T~~-------------~~~Cp~C~~~--~~~~~C~ 696 (900)
T PF03833_consen 638 IQKAAKKGKGTIEVEIG-RRRCPKCGKET-----FYNRCPECGSHTEP-------------VYVCPDCGIE--VEEDECP 696 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCeeEEeee-cccCcccCCcc-----hhhcCcccCCcccc-------------ceeccccccc--cCccccc
Confidence 44555433 2444443 45799996553 45789999754322 2469999653 2345799
Q ss_pred ccCCce
Q 012541 201 RCGGNG 206 (461)
Q Consensus 201 ~C~G~g 206 (461)
.|+...
T Consensus 697 ~C~~~~ 702 (900)
T PF03833_consen 697 KCGRET 702 (900)
T ss_dssp ------
T ss_pred cccccC
Confidence 997654
No 145
>PRK05978 hypothetical protein; Provisional
Probab=48.24 E-value=8.7 Score=34.92 Aligned_cols=24 Identities=33% Similarity=1.056 Sum_probs=11.7
Q ss_pred cCCCcCCccEEEEeeecCCcceeeeecCCCC
Q 012541 158 SCKACWGRGGVLKTQRTPFGLISQVSTCSKC 188 (461)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 188 (461)
.||.| |.|...+ |++.....|+.|
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~C 58 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAAC 58 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCcccc
Confidence 45555 3444432 334444566666
No 146
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=46.09 E-value=1.2e+02 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=19.8
Q ss_pred CeeEEeeeCCeEEEEeCCC-CCCCCEEEEcc
Q 012541 280 TSMEVETVEGMKDLRIPSG-VQPGDTVKLQQ 309 (461)
Q Consensus 280 ~~i~V~tldG~~~l~Ip~g-~q~G~~~~l~g 309 (461)
+++.||-| .+.|||| ++-|.+-.|.|
T Consensus 74 ati~IPEl----~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 74 ATIRIPEL----GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred cEEEccce----EEEECCCccCCceEEeeHh
Confidence 45666654 6889999 78999998854
No 147
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=45.16 E-value=11 Score=32.30 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=13.4
Q ss_pred eeeccCCCCCCcccccccccCCCcC
Q 012541 139 FETCDSCGGTGAKSSNCIQSCKACW 163 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~~~~~~C~~C~ 163 (461)
+++|++|.-.-+--+..+.+||.|+
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCC
Confidence 4456666555544444555555553
No 148
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=44.38 E-value=55 Score=28.38 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=17.1
Q ss_pred cceeeeeE-EeeeeeccCCCCCCcccccccccCCCcCCcc
Q 012541 128 FGGQRGIE-VSCFETCDSCGGTGAKSSNCIQSCKACWGRG 166 (461)
Q Consensus 128 ~G~~k~i~-~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G 166 (461)
.|++.+|. +.....|..|+-...........||.|++..
T Consensus 59 ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 59 KDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 34443333 2344567777643332222222355555443
No 149
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=43.74 E-value=12 Score=36.51 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=9.4
Q ss_pred ccCCCcCCccEEEE
Q 012541 157 QSCKACWGRGGVLK 170 (461)
Q Consensus 157 ~~C~~C~G~G~~~~ 170 (461)
.+||+|+|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 46777777777644
No 150
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=39.18 E-value=12 Score=36.67 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=10.8
Q ss_pred eeeccCCCCCCcccc
Q 012541 139 FETCDSCGGTGAKSS 153 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~ 153 (461)
.++|++|+|+|..+.
T Consensus 38 ~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 38 SVTCPTCQGTGRIPR 52 (238)
T ss_pred CCcCCCCcCCccCCc
Confidence 457888888887665
No 151
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=39.06 E-value=88 Score=29.81 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=7.4
Q ss_pred HHHHHHhhccc
Q 012541 36 EISSAYEVLSD 46 (461)
Q Consensus 36 eI~eAYEVLsD 46 (461)
.+..||+.|.+
T Consensus 6 lL~r~~~~l~~ 16 (201)
T PRK12336 6 LLDRAMEVLPE 16 (201)
T ss_pred HHHHHHHHCCc
Confidence 46677777755
No 152
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=36.96 E-value=23 Score=23.75 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=7.1
Q ss_pred ccCCCcCCccEE
Q 012541 157 QSCKACWGRGGV 168 (461)
Q Consensus 157 ~~C~~C~G~G~~ 168 (461)
..|+.|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 456666666654
No 153
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=36.91 E-value=32 Score=35.03 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=13.2
Q ss_pred ecCCCCCCccEEEeeeccccCC
Q 012541 183 STCSKCGGDGKIIIDHCRRCGG 204 (461)
Q Consensus 183 ~~C~~C~G~G~~i~~~C~~C~G 204 (461)
-.|+.|.-.=......|+.|+.
T Consensus 211 L~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 211 LSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred EEcCCCCCcccccCccCCCCCC
Confidence 3466666655555566666654
No 154
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=36.57 E-value=16 Score=45.59 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=20.6
Q ss_pred cCCCCCCccEEEee---------eccccCCceEEeec
Q 012541 184 TCSKCGGDGKIIID---------HCRRCGGNGEVQSK 211 (461)
Q Consensus 184 ~C~~C~G~G~~i~~---------~C~~C~G~g~v~~~ 211 (461)
.|+.|.|.|.+..+ .|..|+|+.+-.+.
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 58888888876543 59999888776543
No 155
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.74 E-value=21 Score=31.51 Aligned_cols=26 Identities=8% Similarity=-0.087 Sum_probs=15.6
Q ss_pred eeeccCCCCCCcccccccccCCCcCC
Q 012541 139 FETCDSCGGTGAKSSNCIQSCKACWG 164 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~~~~~~C~~C~G 164 (461)
+++|++|.-.-+--+..+.+||.|+-
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCC
Confidence 45677776555555555666666643
No 156
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=35.04 E-value=30 Score=39.70 Aligned_cols=32 Identities=34% Similarity=0.812 Sum_probs=20.5
Q ss_pred ecCCCCCCccEEEee---------eccccCCceEEeecceEEE
Q 012541 183 STCSKCGGDGKIIID---------HCRRCGGNGEVQSKRSMKV 216 (461)
Q Consensus 183 ~~C~~C~G~G~~i~~---------~C~~C~G~g~v~~~k~l~V 216 (461)
-.|..|.|.|.+--+ +|..|+|+.+-. .+++|
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~--EtLev 771 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR--ETLEV 771 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccccc--ceEEE
Confidence 358888888865433 588888776543 34555
No 157
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=34.52 E-value=47 Score=26.32 Aligned_cols=50 Identities=24% Similarity=0.617 Sum_probs=23.7
Q ss_pred eccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------eccccCC
Q 012541 141 TCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------HCRRCGG 204 (461)
Q Consensus 141 ~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------~C~~C~G 204 (461)
.|+.|+.. .........|..|... |.....||.|+-.=.+.+. -|.+|+|
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~-------------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKD-------------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--E-------------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCc-cEEeCCEEECcccccc-------------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 57777655 2222345667777643 2334678888877766653 2776655
No 158
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=34.50 E-value=52 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhhcCCC
Q 012541 327 IVNVLIPKDISDPERALVEEIAFLKSPG 354 (461)
Q Consensus 327 ~f~V~~P~~ls~~q~~lle~l~~~~~~~ 354 (461)
.....||.+||+.||..+-.++....-.
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5678899999999999999999876543
No 159
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=34.22 E-value=14 Score=26.14 Aligned_cols=11 Identities=64% Similarity=0.939 Sum_probs=9.8
Q ss_pred HHHHhhccccc
Q 012541 38 SSAYEVLSDDE 48 (461)
Q Consensus 38 ~eAYEVLsD~~ 48 (461)
++||-+|||.+
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 69999999986
No 160
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=33.96 E-value=43 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=16.5
Q ss_pred ccCCCcCCccEEE-EeeecCC-cceee-eecCCCCC
Q 012541 157 QSCKACWGRGGVL-KTQRTPF-GLISQ-VSTCSKCG 189 (461)
Q Consensus 157 ~~C~~C~G~G~~~-~~~~~~~-g~~~~-~~~C~~C~ 189 (461)
..|+.|+..|... .....|+ +.+.. ...|++|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 3588888888643 2333443 33332 35788883
No 161
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.02 E-value=45 Score=28.72 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=11.0
Q ss_pred cceeeeeEE-eeeeeccCCCCCC
Q 012541 128 FGGQRGIEV-SCFETCDSCGGTG 149 (461)
Q Consensus 128 ~G~~k~i~~-~r~~~C~~C~GsG 149 (461)
.|++.++.. .....|..|+...
T Consensus 58 egA~L~I~~vp~~~~C~~Cg~~~ 80 (113)
T PRK12380 58 QGCDLHIVYKPAQAWCWDCSQVV 80 (113)
T ss_pred CCCEEEEEeeCcEEEcccCCCEE
Confidence 344444433 3445677776433
No 162
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=32.98 E-value=95 Score=28.69 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=19.0
Q ss_pred HHHHhCCCCCC-----------------ChhhHHHHHHHHHHHh
Q 012541 16 ESLLYHPDINK-----------------SPGAEEKFKEISSAYE 42 (461)
Q Consensus 16 LA~kyHPD~N~-----------------~~~aeekFkeI~eAYE 42 (461)
-++..|||... +++..+.|.++|+||+
T Consensus 66 ~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 66 EALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred HHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 46789999753 2345567888888885
No 163
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=32.10 E-value=36 Score=30.84 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=6.9
Q ss_pred ecCCCCCCccEE
Q 012541 183 STCSKCGGDGKI 194 (461)
Q Consensus 183 ~~C~~C~G~G~~ 194 (461)
.+|+.|+++-+.
T Consensus 131 ~~Cp~C~~~~F~ 142 (146)
T PF07295_consen 131 PPCPKCGHTEFT 142 (146)
T ss_pred CCCCCCCCCeee
Confidence 456666665543
No 164
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=31.88 E-value=48 Score=24.86 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=18.2
Q ss_pred CCccEEEEEEEEcCCC--CChhHHH
Q 012541 320 VRGDHLFIVNVLIPKD--ISDPERA 342 (461)
Q Consensus 320 ~rGDL~V~f~V~~P~~--ls~~q~~ 342 (461)
..||+.|-|+|.+|+- +|.++-+
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYe 50 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYE 50 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhH
Confidence 4699999999999996 5555543
No 165
>PRK14051 negative regulator GrlR; Provisional
Probab=30.59 E-value=1.5e+02 Score=25.55 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=41.1
Q ss_pred ccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEe-eeCCeEEEEeCCCCCCCCEEEEccCCCCC
Q 012541 244 GDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVE-TVEGMKDLRIPSGVQPGDTVKLQQMGVPD 314 (461)
Q Consensus 244 GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~-tldG~~~l~Ip~g~q~G~~~~l~g~G~P~ 314 (461)
-||+++++-..|+.-+-=+-+--+.+.|+-.-.-.|..+.+. +..|..+|.|..-.+-=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYAKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEeeeeeeeeEEccCCCcc
Confidence 567777776666554333333334444542222234444444 45666667776655555679999999995
No 166
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=30.58 E-value=75 Score=22.11 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=16.9
Q ss_pred cCCCcCCccEEEEeeecCCc--ceeeeecCCCCC
Q 012541 158 SCKACWGRGGVLKTQRTPFG--LISQVSTCSKCG 189 (461)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g--~~~~~~~C~~C~ 189 (461)
.|+.|+....+..+.|+... .+...-.|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 57788777776554443221 222234566663
No 167
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=30.11 E-value=22 Score=36.21 Aligned_cols=48 Identities=15% Similarity=-0.014 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccc
Q 012541 6 PRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 6 ~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
.++|++||..+.. +|||++++. .++|.++-.=|+.+.|...+..|+.+
T Consensus 39 ~k~i~ka~~i~~~-~~~~~t~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (335)
T KOG0724|consen 39 FKKIEKALAILDD-DEPRRTPDS--WDKFAEALPLEKRLEDKIEEYIGLVF 86 (335)
T ss_pred HHHHHHHHHHHhc-cccccchhh--hhHHHhcCccccccchhHHhhhhhHH
Confidence 4789999999999 999999643 33676666656777777777766654
No 168
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.59 E-value=38 Score=29.34 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=14.3
Q ss_pred CCchhhhHHHHHHHhhhhhhhcc
Q 012541 423 PDSFLMASVVTVFMITSIFNTVG 445 (461)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~ 445 (461)
-||| |+|. ++||+|||+-+..
T Consensus 105 kEGf-~asf-a~FlvtWIi~Yt~ 125 (129)
T KOG3415|consen 105 KEGF-MASF-ALFLVTWIIFYTL 125 (129)
T ss_pred HHHH-HHHH-HHHHHHHHHHHhh
Confidence 3444 5554 5999999987653
No 169
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=29.42 E-value=59 Score=28.06 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=10.2
Q ss_pred cceeeeeEE-eeeeeccCCCC
Q 012541 128 FGGQRGIEV-SCFETCDSCGG 147 (461)
Q Consensus 128 ~G~~k~i~~-~r~~~C~~C~G 147 (461)
.|++..+.. .....|..|+-
T Consensus 58 egA~L~i~~~p~~~~C~~Cg~ 78 (114)
T PRK03681 58 EGCKLHLEEQEAECWCETCQQ 78 (114)
T ss_pred CCCEEEEEeeCcEEEcccCCC
Confidence 344544443 33446777753
No 170
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=29.33 E-value=42 Score=29.12 Aligned_cols=20 Identities=35% Similarity=0.926 Sum_probs=13.2
Q ss_pred CCCCCCccEEEeeeccccCC
Q 012541 185 CSKCGGDGKIIIDHCRRCGG 204 (461)
Q Consensus 185 C~~C~G~G~~i~~~C~~C~G 204 (461)
||.|++.=.+..-.|..|+.
T Consensus 1 CPvCg~~l~vt~l~C~~C~t 20 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGT 20 (113)
T ss_pred CCCCCCceEEEEEEcCCCCC
Confidence 66666666666666777753
No 171
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=28.84 E-value=69 Score=22.12 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=16.2
Q ss_pred cCCCcCCccEEEEeeecCCc--ceeeeecCCCCC
Q 012541 158 SCKACWGRGGVLKTQRTPFG--LISQVSTCSKCG 189 (461)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g--~~~~~~~C~~C~ 189 (461)
.|+.|+....+..+.|+..+ .+...-.|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 58888888877665554322 233334566663
No 172
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=28.55 E-value=1e+02 Score=26.19 Aligned_cols=22 Identities=32% Similarity=0.822 Sum_probs=15.8
Q ss_pred ecCCCCCCccEEEee---eccccCC
Q 012541 183 STCSKCGGDGKIIID---HCRRCGG 204 (461)
Q Consensus 183 ~~C~~C~G~G~~i~~---~C~~C~G 204 (461)
..|.-|.++|..+.. .|..|+-
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~ 60 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGV 60 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCC
Confidence 678888888877664 3888853
No 173
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=28.33 E-value=25 Score=17.68 Aligned_cols=10 Identities=40% Similarity=1.105 Sum_probs=7.7
Q ss_pred HHHHHHhhcC
Q 012541 391 WNSVKCFLGQ 400 (461)
Q Consensus 391 ~~~~~~~~~~ 400 (461)
|+.||++|.+
T Consensus 1 Wn~Ik~~~s~ 10 (11)
T PF05017_consen 1 WNGIKSFFSG 10 (11)
T ss_pred CchHHHHhhc
Confidence 7888888764
No 174
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=27.70 E-value=75 Score=24.73 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=7.1
Q ss_pred CCCcCCccEEEEeee
Q 012541 159 CKACWGRGGVLKTQR 173 (461)
Q Consensus 159 C~~C~G~G~~~~~~~ 173 (461)
|+.|+.+-......+
T Consensus 3 C~KCg~~~~e~~~v~ 17 (64)
T PF09855_consen 3 CPKCGNEEYESGEVR 17 (64)
T ss_pred CCCCCCcceecceEE
Confidence 555555544444333
No 175
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=27.69 E-value=46 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=16.5
Q ss_pred hhhHHHHHHHhhhhhhhcccc
Q 012541 427 LMASVVTVFMITSIFNTVGKT 447 (461)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~ 447 (461)
||+.+|++||+-+++..+.+.
T Consensus 24 lmTLLl~fFVlL~s~s~~d~~ 44 (58)
T PF13677_consen 24 LMTLLLAFFVLLFSMSSVDKE 44 (58)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 788889999998887776543
No 176
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=27.66 E-value=9.6e+02 Score=27.38 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=10.8
Q ss_pred CCChhHHHHHHHHHh
Q 012541 335 DISDPERALVEEIAF 349 (461)
Q Consensus 335 ~ls~~q~~lle~l~~ 349 (461)
.+++++.+.+.++++
T Consensus 258 ~~t~ed~e~i~elak 272 (682)
T COG1241 258 EITEEDEEEIKELAK 272 (682)
T ss_pred cCCHHHHHHHHHHhc
Confidence 477777777777775
No 177
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=27.40 E-value=37 Score=36.08 Aligned_cols=14 Identities=29% Similarity=0.890 Sum_probs=10.0
Q ss_pred ecCCCCCCccEEEe
Q 012541 183 STCSKCGGDGKIII 196 (461)
Q Consensus 183 ~~C~~C~G~G~~i~ 196 (461)
.+|+.|+|+|++..
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 56888888777654
No 178
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=26.90 E-value=2.3e+02 Score=26.91 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=8.2
Q ss_pred eeeeeccCCCCCC
Q 012541 137 SCFETCDSCGGTG 149 (461)
Q Consensus 137 ~r~~~C~~C~GsG 149 (461)
..++.|+.|+-.-
T Consensus 96 ~~yV~C~~C~~pd 108 (201)
T PRK12336 96 DEYVICSECGLPD 108 (201)
T ss_pred HheEECCCCCCCC
Confidence 4567777776543
No 179
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=26.54 E-value=1.1e+02 Score=26.54 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhCCCCC---CC--hhhHHHHHHHHHHHhhcccc
Q 012541 6 PRCRRSRPLTESLLYHPDIN---KS--PGAEEKFKEISSAYEVLSDD 47 (461)
Q Consensus 6 ~~~Ir~Ayr~LA~kyHPD~N---~~--~~aeekFkeI~eAYEVLsD~ 47 (461)
-.+++.|-|..=++-|||.- |+ ...++-+|.++.=-|.|..+
T Consensus 8 ~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 8 SPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45789999999999999953 32 23466688888877777654
No 180
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=25.93 E-value=92 Score=29.57 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhh-ccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEV-LSD 46 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEV-LsD 46 (461)
+|=+||.+|+..|-.+|--| ++.=.+|-.|||. |.+
T Consensus 4 ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 4 ASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence 67899999999999999333 3445568999995 444
No 181
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.89 E-value=88 Score=23.82 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhhcCCC
Q 012541 327 IVNVLIPKDISDPERALVEEIAFLKSPG 354 (461)
Q Consensus 327 ~f~V~~P~~ls~~q~~lle~l~~~~~~~ 354 (461)
.-...||..||+.+|..+-+++....-.
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~ 43 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLK 43 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3467899999999999999999876543
No 182
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=24.85 E-value=38 Score=35.55 Aligned_cols=33 Identities=27% Similarity=0.650 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHh----hhhhhhcccccccchhhhhhh
Q 012541 426 FLMASVVTVFMI----TSIFNTVGKTDKWTSVRQRNQ 458 (461)
Q Consensus 426 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 458 (461)
|+.|+++++|.+ ++++++=.+.+.|.|.|.|-+
T Consensus 47 ~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrr 83 (400)
T COG3071 47 FLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRR 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 456666666666 666666678889999877644
No 183
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=24.60 E-value=86 Score=27.05 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=8.7
Q ss_pred ceeeeeEE-eeeeeccCCC
Q 012541 129 GGQRGIEV-SCFETCDSCG 146 (461)
Q Consensus 129 G~~k~i~~-~r~~~C~~C~ 146 (461)
|.+..+.. .....|..|+
T Consensus 59 ga~L~I~~~p~~~~C~~Cg 77 (115)
T TIGR00100 59 GAKLNIEDEPVECECEDCS 77 (115)
T ss_pred CCEEEEEeeCcEEEcccCC
Confidence 44444433 3344577775
No 184
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=24.57 E-value=78 Score=23.18 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=20.7
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCC
Q 012541 2 FVRMPRCRRSRPLTESLLYHPDIN 25 (461)
Q Consensus 2 ~~~~~~~Ir~Ayr~LA~kyHPD~N 25 (461)
-+|+|++++.+.++.|...|=-.|
T Consensus 8 ~lRlP~~l~~~lk~~A~~~gRS~N 31 (50)
T PF03869_consen 8 NLRLPEELKEKLKERAEENGRSMN 31 (50)
T ss_dssp EEECEHHHHHHHHHHHHHTTS-HH
T ss_pred eeECCHHHHHHHHHHHHHhCCChH
Confidence 379999999999999999887776
No 185
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=24.39 E-value=2.4e+02 Score=26.94 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=55.7
Q ss_pred ccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChh
Q 012541 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDP 339 (461)
Q Consensus 260 R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~ 339 (461)
|-..||.+++-.+=.|-.-||+..|.-..|...|++|+ |+.+-.|+.-+... .|--||-=+-.|--.=--.-.+.
T Consensus 113 ~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPA----GdLVlypStSlH~V-tPVTRg~R~asffW~qslir~d~ 187 (229)
T COG3128 113 RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPA----GDLVLYPSTSLHEV-TPVTRGERFASFFWIQSLIRDDK 187 (229)
T ss_pred eeEeeeeeeeecCCccccCCceEEEeccccceEEeccC----CCEEEcccccceec-cccccCceEEEeeehHHHhhhhH
Confidence 44556777777766678889999999999988999998 67777777766543 24456655443322111113456
Q ss_pred HHHHHHHHHh
Q 012541 340 ERALVEEIAF 349 (461)
Q Consensus 340 q~~lle~l~~ 349 (461)
+|.+|-++..
T Consensus 188 ~r~~l~e~d~ 197 (229)
T COG3128 188 KRALLFELDK 197 (229)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 186
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=24.19 E-value=99 Score=25.44 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCc--cEEEEEEEEcCC-CCChhHHHHHHHHHhh
Q 012541 310 MGVPDINNPSVRG--DHLFIVNVLIPK-DISDPERALVEEIAFL 350 (461)
Q Consensus 310 ~G~P~~~~~~~rG--DL~V~f~V~~P~-~ls~~q~~lle~l~~~ 350 (461)
.|+|+.---...| +.+.-+.|+.|. +|+++|++-++.|.+.
T Consensus 46 ~G~PDl~~~~~~~~~~~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 46 SGFPDLILWRPRGKRDIFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred CCCCcEEEEecCCCccEEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 5667543211223 257788889995 7999999999998876
No 187
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=24.07 E-value=1.7e+02 Score=26.75 Aligned_cols=10 Identities=50% Similarity=0.707 Sum_probs=7.8
Q ss_pred HHHHhCCCCC
Q 012541 16 ESLLYHPDIN 25 (461)
Q Consensus 16 LA~kyHPD~N 25 (461)
-++.-|||..
T Consensus 56 ~~l~~HP~lg 65 (158)
T TIGR03180 56 EALAGHPRIG 65 (158)
T ss_pred HHHHhCCccc
Confidence 4678999975
No 188
>PF01104 Bunya_NS-S: Bunyavirus non-structural protein NS-s; InterPro: IPR000797 The NSS proteins are encoded in the S RNA from ssRNA negative-strand viruses []. The S RNA also codes for the nucleoprotein N. The two main products are read from overlapping reading frames in the viral complementary sequence. ; GO: 0016032 viral reproduction
Probab=23.71 E-value=24 Score=29.37 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=15.4
Q ss_pred hcccccccchhhhhhhc
Q 012541 443 TVGKTDKWTSVRQRNQR 459 (461)
Q Consensus 443 ~~~~~~~~~~~~~~~~~ 459 (461)
+++.|-||+|+|+||++
T Consensus 37 S~~rRpkl~s~~~~~~~ 53 (91)
T PF01104_consen 37 SMRRRPKLSSVRRRNQR 53 (91)
T ss_pred cccccccEEEEEeecCE
Confidence 67899999999999986
No 189
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=23.48 E-value=48 Score=28.48 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=15.4
Q ss_pred ceeeeeEE-eeeeeccCCCCCCcccccccccCCCcCCcc
Q 012541 129 GGQRGIEV-SCFETCDSCGGTGAKSSNCIQSCKACWGRG 166 (461)
Q Consensus 129 G~~k~i~~-~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G 166 (461)
|....+.. +....|..|.-........ ..||.|++..
T Consensus 59 ~a~L~Ie~~p~~~~C~~Cg~~~~~~~~~-~~CP~Cgs~~ 96 (113)
T PF01155_consen 59 GAELEIEEVPARARCRDCGHEFEPDEFD-FSCPRCGSPD 96 (113)
T ss_dssp T-EEEEEEE--EEEETTTS-EEECHHCC-HH-SSSSSS-
T ss_pred CCEEEEEecCCcEECCCCCCEEecCCCC-CCCcCCcCCC
Confidence 44433332 3445688886655433222 3455555554
No 190
>PF14353 CpXC: CpXC protein
Probab=23.37 E-value=67 Score=27.91 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=10.5
Q ss_pred ccCCCcCCccEEE
Q 012541 157 QSCKACWGRGGVL 169 (461)
Q Consensus 157 ~~C~~C~G~G~~~ 169 (461)
.+||.|+..+...
T Consensus 2 itCP~C~~~~~~~ 14 (128)
T PF14353_consen 2 ITCPHCGHEFEFE 14 (128)
T ss_pred cCCCCCCCeeEEE
Confidence 4799999988864
No 191
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=23.32 E-value=70 Score=24.52 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=9.2
Q ss_pred eccCCCCCCcccc-cccccCCCc
Q 012541 141 TCDSCGGTGAKSS-NCIQSCKAC 162 (461)
Q Consensus 141 ~C~~C~GsG~~~~-~~~~~C~~C 162 (461)
.|.+|+..=+..+ ...-.||.|
T Consensus 9 ~CtSCg~~i~~~~~~~~F~CPnC 31 (59)
T PRK14890 9 KCTSCGIEIAPREKAVKFLCPNC 31 (59)
T ss_pred cccCCCCcccCCCccCEeeCCCC
Confidence 4666643322111 233445555
No 192
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=23.26 E-value=1.3e+02 Score=32.76 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=31.9
Q ss_pred hccccccccccccCcCCCCChHH-HHHHhhcCCCcccceeeeecccCCccccCCCCchhhhHHHHHHHhhhhhhhccccc
Q 012541 370 KSAKVRDWKMHCQGIKSVGSWWN-SVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTD 448 (461)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (461)
.+.++.+++.|+ -..|+ +++|.|+=| ++.+||+.+.+|+++- +|+ ..
T Consensus 153 Ls~iLin~k~hd------~e~wkwrfeD~fGVD---------------------~~t~l~v~l~lL~IV~-iVA----te 200 (549)
T PF05934_consen 153 LSDILINFKPHD------YEAWKWRFEDTFGVD---------------------PYTVLMVLLCLLCIVA-IVA----TE 200 (549)
T ss_pred HHHHhhcCCcch------hHHhhhhhccccCCc---------------------hhHHHHHHHHHHHHHH-HHH----HH
Confidence 344566666544 35675 788887753 4567777664344332 222 45
Q ss_pred ccchhhhhhh
Q 012541 449 KWTSVRQRNQ 458 (461)
Q Consensus 449 ~~~~~~~~~~ 458 (461)
-||.|+-.-|
T Consensus 201 Lwt~V~W~~Q 210 (549)
T PF05934_consen 201 LWTYVSWFTQ 210 (549)
T ss_pred HHHHHHHHHH
Confidence 5666665554
No 193
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=22.22 E-value=60 Score=21.97 Aligned_cols=28 Identities=32% Similarity=0.608 Sum_probs=10.1
Q ss_pred cCCCcCCccEEEEeeecCCcceeeeecCCCCC
Q 012541 158 SCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 189 (461)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 189 (461)
-|+.|++.=. .++|-|--.....|+.|+
T Consensus 2 fC~~CG~~l~----~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGPLE----RRIPEGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B-E----EE--TT-SS-EEEETTTT
T ss_pred ccccccChhh----hhcCCCCCccceECCCCC
Confidence 3666666522 123334334445676663
No 194
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=21.77 E-value=1e+02 Score=23.44 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred EEEcCCCCChhHHHHHHHHHhhcCCC
Q 012541 329 NVLIPKDISDPERALVEEIAFLKSPG 354 (461)
Q Consensus 329 ~V~~P~~ls~~q~~lle~l~~~~~~~ 354 (461)
.+.||..||+.||..+-+|++...-.
T Consensus 19 ~l~F~p~ls~~eR~~vH~lA~~~gL~ 44 (60)
T cd02641 19 ELEFPPTLSSHDRLLVHELAEELGLR 44 (60)
T ss_pred cEECCCCCCHHHHHHHHHHHHHcCCc
Confidence 57899999999999999999986543
No 195
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.62 E-value=28 Score=30.48 Aligned_cols=9 Identities=0% Similarity=0.231 Sum_probs=4.6
Q ss_pred EEEEEEEec
Q 012541 247 FVALHVDEK 255 (461)
Q Consensus 247 ~V~i~v~~h 255 (461)
|++|-+.-|
T Consensus 61 ~fvI~IvG~ 69 (126)
T COG5349 61 YFVILIVGH 69 (126)
T ss_pred EEEEEeecH
Confidence 555555444
No 196
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.18 E-value=1.1e+02 Score=23.31 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhhcCCC
Q 012541 328 VNVLIPKDISDPERALVEEIAFLKSPG 354 (461)
Q Consensus 328 f~V~~P~~ls~~q~~lle~l~~~~~~~ 354 (461)
-.+.||..||+.+|.++-+++....-.
T Consensus 18 ~~l~f~p~lt~~eR~~vH~~a~~~gL~ 44 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQIAQKYGLK 44 (60)
T ss_pred ceEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 457899999999999999999976543
No 197
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=21.11 E-value=59 Score=22.54 Aligned_cols=8 Identities=50% Similarity=1.547 Sum_probs=4.6
Q ss_pred ecCCCCCC
Q 012541 183 STCSKCGG 190 (461)
Q Consensus 183 ~~C~~C~G 190 (461)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 45666655
No 198
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=21.11 E-value=66 Score=24.58 Aligned_cols=7 Identities=43% Similarity=1.360 Sum_probs=3.1
Q ss_pred ecCCCCC
Q 012541 183 STCSKCG 189 (461)
Q Consensus 183 ~~C~~C~ 189 (461)
.+|+.|+
T Consensus 18 e~Cp~CG 24 (59)
T COG2260 18 EKCPVCG 24 (59)
T ss_pred ccCCCCC
Confidence 3444443
No 199
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=20.81 E-value=66 Score=22.63 Aligned_cols=10 Identities=40% Similarity=1.106 Sum_probs=3.3
Q ss_pred eeccCCCCCC
Q 012541 140 ETCDSCGGTG 149 (461)
Q Consensus 140 ~~C~~C~GsG 149 (461)
.+|+.|.|+.
T Consensus 4 ~pCP~CGG~D 13 (40)
T PF08273_consen 4 GPCPICGGKD 13 (40)
T ss_dssp E--TTTT-TT
T ss_pred CCCCCCcCcc
Confidence 3455554443
No 200
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.53 E-value=63 Score=36.52 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=10.2
Q ss_pred eccCCCCCCccc-ccccccCCCcC
Q 012541 141 TCDSCGGTGAKS-SNCIQSCKACW 163 (461)
Q Consensus 141 ~C~~C~GsG~~~-~~~~~~C~~C~ 163 (461)
.|++|++.=.-. ......|+.|+
T Consensus 394 ~C~~C~~~L~~h~~~~~l~Ch~CG 417 (665)
T PRK14873 394 RCRHCTGPLGLPSAGGTPRCRWCG 417 (665)
T ss_pred ECCCCCCceeEecCCCeeECCCCc
Confidence 455555443221 12344555554
No 201
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=12 Score=37.44 Aligned_cols=62 Identities=18% Similarity=0.365 Sum_probs=0.0
Q ss_pred eeeeEEeeeeeccCC---------CCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----
Q 012541 131 QRGIEVSCFETCDSC---------GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---- 197 (461)
Q Consensus 131 ~k~i~~~r~~~C~~C---------~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~---- 197 (461)
...++..+...|+.| ++.+...+...-.|+.|.-.=..++ .+|..|+-++..--.
T Consensus 177 ~~~~e~e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR------------~KC~nC~~t~~l~y~sl~s 244 (308)
T COG3058 177 KARVENESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVR------------VKCSNCEQSKKLHYWSLES 244 (308)
T ss_pred cccccccccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHH------------HHhccccccCCccceeccc
Q ss_pred ---------eccccCC
Q 012541 198 ---------HCRRCGG 204 (461)
Q Consensus 198 ---------~C~~C~G 204 (461)
.|..|++
T Consensus 245 ~E~A~vkAEtC~~C~s 260 (308)
T COG3058 245 SELAAVKAETCGDCNS 260 (308)
T ss_pred hhhhHhhhhcCCcHHH
No 202
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.36 E-value=55 Score=37.03 Aligned_cols=40 Identities=18% Similarity=0.477 Sum_probs=22.1
Q ss_pred eeccCCCCCCcc-cccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 012541 140 ETCDSCGGTGAK-SSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 192 (461)
Q Consensus 140 ~~C~~C~GsG~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 192 (461)
..|+.|++.=.- .......|+.|+-+-.. ...|+.|++.-
T Consensus 391 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~-------------~~~Cp~Cg~~~ 431 (679)
T PRK05580 391 AECPHCDASLTLHRFQRRLRCHHCGYQEPI-------------PKACPECGSTD 431 (679)
T ss_pred cCCCCCCCceeEECCCCeEECCCCcCCCCC-------------CCCCCCCcCCe
Confidence 458888764221 12344568888643221 24688887653
No 203
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.26 E-value=52 Score=22.43 Aligned_cols=7 Identities=57% Similarity=1.521 Sum_probs=3.9
Q ss_pred ecCCCCC
Q 012541 183 STCSKCG 189 (461)
Q Consensus 183 ~~C~~C~ 189 (461)
..|+.|+
T Consensus 26 vrC~~C~ 32 (37)
T PF13719_consen 26 VRCPKCG 32 (37)
T ss_pred EECCCCC
Confidence 4566663
No 204
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=20.09 E-value=1.4e+02 Score=25.79 Aligned_cols=42 Identities=26% Similarity=0.459 Sum_probs=30.2
Q ss_pred EEeCCCCCCCCEEEEccCCCCCCCC-----CCCCccEEEEEEEEcCC
Q 012541 293 LRIPSGVQPGDTVKLQQMGVPDINN-----PSVRGDHLFIVNVLIPK 334 (461)
Q Consensus 293 l~Ip~g~q~G~~~~l~g~G~P~~~~-----~~~rGDL~V~f~V~~P~ 334 (461)
..||.+.++|+.+.|.|.=.+.... ....+|+.++|++.+++
T Consensus 3 ~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~~ 49 (128)
T smart00276 3 LPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFNE 49 (128)
T ss_pred ccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCCC
Confidence 4678889999999999875443211 11237999999999975
Done!