Query 012541
Match_columns 461
No_of_seqs 300 out of 2486
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:27:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 1E-65 3.5E-70 519.3 20.9 273 4-350 40-316 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 3.3E-60 1.1E-64 462.3 22.0 233 109-345 8-248 (248)
3 3agx_A DNAJ homolog subfamily 100.0 3.6E-46 1.2E-50 347.0 19.8 178 112-349 2-180 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 4.3E-45 1.5E-49 339.5 19.9 177 111-348 2-179 (180)
5 1c3g_A Heat shock protein 40; 100.0 7.8E-43 2.7E-47 321.5 15.2 169 113-345 1-170 (170)
6 3i38_A Putative chaperone DNAJ 99.9 8.2E-27 2.8E-31 199.2 11.2 96 253-351 2-97 (109)
7 1xao_A YDJ1, mitochondrial pro 99.9 1.2E-24 4E-29 189.3 10.5 95 257-352 1-100 (121)
8 2ctt_A DNAJ homolog subfamily 99.9 4.5E-23 1.5E-27 174.6 4.9 103 112-218 1-103 (104)
9 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.1E-21 3.8E-26 165.7 4.0 85 3-87 14-99 (103)
10 1hdj_A Human HSP40, HDJ-1; mol 99.8 8.7E-20 3E-24 145.9 5.2 61 3-63 14-74 (77)
11 2ctr_A DNAJ homolog subfamily 99.8 9.7E-20 3.3E-24 149.4 5.0 62 3-64 18-79 (88)
12 2ctp_A DNAJ homolog subfamily 99.7 4.7E-19 1.6E-23 141.9 4.6 59 3-61 18-76 (78)
13 2dmx_A DNAJ homolog subfamily 99.7 7.2E-19 2.5E-23 145.4 5.4 62 3-64 20-83 (92)
14 2dn9_A DNAJ homolog subfamily 99.7 7.2E-19 2.5E-23 141.2 5.1 59 3-61 18-77 (79)
15 2ej7_A HCG3 gene; HCG3 protein 99.7 7.2E-19 2.5E-23 142.2 5.1 60 3-62 20-81 (82)
16 2cug_A Mkiaa0962 protein; DNAJ 99.7 7.4E-19 2.5E-23 144.2 4.7 58 3-60 28-85 (88)
17 2o37_A Protein SIS1; HSP40, J- 99.7 1.6E-18 5.4E-23 143.4 3.4 59 4-64 20-78 (92)
18 2ctq_A DNAJ homolog subfamily 99.7 2.3E-18 7.8E-23 147.6 3.4 59 4-62 32-91 (112)
19 2lgw_A DNAJ homolog subfamily 99.7 2.9E-18 1E-22 143.7 3.8 61 3-63 13-75 (99)
20 2yua_A Williams-beuren syndrom 99.7 5.2E-18 1.8E-22 142.2 4.5 54 3-56 28-82 (99)
21 2ctw_A DNAJ homolog subfamily 99.7 4.3E-18 1.5E-22 145.2 3.7 60 3-62 28-88 (109)
22 2och_A Hypothetical protein DN 99.7 6.1E-18 2.1E-22 133.8 4.2 54 4-59 20-73 (73)
23 3apq_A DNAJ homolog subfamily 99.7 5.7E-18 1.9E-22 159.2 3.1 61 4-64 14-75 (210)
24 1wjz_A 1700030A21RIK protein; 99.7 3.1E-17 1.1E-21 135.9 3.7 56 3-58 27-89 (94)
25 2qsa_A DNAJ homolog DNJ-2; J-d 99.6 5.7E-17 1.9E-21 138.1 2.8 55 5-59 29-87 (109)
26 2ys8_A RAB-related GTP-binding 99.6 6.2E-16 2.1E-20 127.3 5.1 50 3-52 38-87 (90)
27 1gh6_A Large T antigen; tumor 99.6 1.6E-16 5.3E-21 136.4 1.2 52 4-58 20-73 (114)
28 1faf_A Large T antigen; J doma 99.6 4.9E-16 1.7E-20 124.8 4.1 55 3-61 24-78 (79)
29 2pf4_E Small T antigen; PP2A, 99.6 2.3E-16 7.8E-21 144.6 0.5 50 6-58 27-76 (174)
30 1exk_A DNAJ protein; extended 99.5 5.4E-15 1.9E-19 118.4 5.9 78 129-210 1-78 (79)
31 2l6l_A DNAJ homolog subfamily 99.5 2.5E-15 8.6E-20 135.7 4.3 56 3-58 21-83 (155)
32 1iur_A KIAA0730 protein; DNAJ 99.5 4.3E-15 1.5E-19 121.7 4.9 52 3-54 27-80 (88)
33 2qwo_B Putative tyrosine-prote 99.5 7.9E-15 2.7E-19 120.8 2.4 44 3-46 44-91 (92)
34 3ag7_A Putative uncharacterize 99.5 5.5E-15 1.9E-19 125.2 1.2 45 4-48 52-104 (106)
35 3apo_A DNAJ homolog subfamily 99.5 2.5E-15 8.5E-20 167.1 -1.4 62 3-64 32-94 (780)
36 3uo3_A J-type CO-chaperone JAC 99.5 5.3E-15 1.8E-19 136.9 0.5 52 3-56 29-80 (181)
37 3bvo_A CO-chaperone protein HS 99.5 1.7E-14 5.9E-19 136.2 3.2 52 4-55 57-114 (207)
38 1fpo_A HSC20, chaperone protei 99.4 2.3E-14 7.8E-19 131.5 2.7 53 5-57 16-74 (171)
39 3hho_A CO-chaperone protein HS 99.4 3E-14 1E-18 131.2 3.3 51 6-56 20-76 (174)
40 2guz_A Mitochondrial import in 99.4 2.4E-13 8.3E-18 106.8 3.7 45 4-51 27-71 (71)
41 1nlt_A Protein YDJ1, mitochond 99.3 2E-12 6.9E-17 125.4 7.7 64 202-265 177-246 (248)
42 3i38_A Putative chaperone DNAJ 99.0 2E-10 6.7E-15 97.6 3.5 52 213-266 39-90 (109)
43 1xao_A YDJ1, mitochondrial pro 98.9 7.9E-10 2.7E-14 95.6 3.7 55 212-266 34-92 (121)
44 3agx_A DNAJ homolog subfamily 98.5 4E-08 1.4E-12 90.7 4.2 83 110-264 90-173 (181)
45 3lz8_A Putative chaperone DNAJ 98.5 1.5E-07 5.1E-12 94.7 7.0 74 261-335 139-226 (329)
46 1c3g_A Heat shock protein 40; 98.5 3.8E-07 1.3E-11 83.3 8.7 71 264-335 2-81 (170)
47 2q2g_A HSP40 protein, heat sho 98.4 5.8E-07 2E-11 82.8 8.6 74 262-336 3-88 (180)
48 3pmq_A Decaheme cytochrome C M 98.0 9.4E-08 3.2E-12 103.7 -6.1 78 116-193 168-257 (669)
49 3lcz_A YCZA, inhibitor of trap 97.7 1.2E-05 4.2E-10 59.0 1.8 30 182-211 9-38 (53)
50 2guz_B Mitochondrial import in 97.6 4.9E-05 1.7E-09 58.2 4.3 40 4-46 19-58 (65)
51 1exk_A DNAJ protein; extended 97.5 5E-05 1.7E-09 60.0 3.5 47 154-209 9-63 (79)
52 2ctt_A DNAJ homolog subfamily 97.5 4.6E-05 1.6E-09 63.6 2.9 47 139-197 45-96 (104)
53 2bx9_A Anti-trap, AT, tryptoph 97.4 1.6E-05 5.3E-10 58.4 -0.7 38 139-179 9-47 (53)
54 2bx9_A Anti-trap, AT, tryptoph 97.0 0.00033 1.1E-08 51.3 2.5 28 183-210 10-37 (53)
55 3lcz_A YCZA, inhibitor of trap 96.4 0.0018 6.1E-08 47.4 2.8 27 140-169 10-36 (53)
56 2y4t_A DNAJ homolog subfamily 80.6 0.63 2.2E-05 45.9 2.1 25 4-28 394-418 (450)
57 2qkd_A Zinc finger protein ZPR 68.1 14 0.00047 37.6 8.2 27 279-309 294-320 (404)
58 2qkd_A Zinc finger protein ZPR 66.3 9 0.00031 39.0 6.4 28 279-310 86-113 (404)
59 2cqn_A Formin-binding protein 55.0 4.9 0.00017 31.2 1.7 52 5-57 7-62 (77)
60 1ltl_A DNA replication initiat 40.7 53 0.0018 31.3 6.9 37 155-195 133-169 (279)
61 1ltl_A DNA replication initiat 39.2 1.1E+02 0.0039 28.9 9.0 27 140-166 135-166 (279)
62 1qo8_A Flavocytochrome C3 fuma 37.4 1.6 5.5E-05 46.1 -5.0 66 141-206 14-86 (566)
63 1y0p_A Fumarate reductase flav 35.9 4.1 0.00014 43.0 -2.1 65 141-205 13-88 (571)
64 3nyb_B Protein AIR2; polya RNA 32.9 32 0.0011 26.9 3.2 59 138-201 4-64 (83)
65 2vl6_A SSO MCM N-TER, minichro 32.6 1.6E+02 0.0054 27.6 8.7 88 155-252 140-236 (268)
66 1msz_A DNA-binding protein smu 31.4 32 0.0011 27.2 2.9 25 329-353 35-59 (86)
67 1d4d_A Flavocytochrome C fumar 29.3 5.4 0.00018 42.2 -2.6 64 141-204 15-90 (572)
68 2jrp_A Putative cytoplasmic pr 28.4 85 0.0029 24.5 4.9 51 140-204 3-59 (81)
69 2fiy_A Protein FDHE homolog; F 25.6 37 0.0013 33.2 2.9 50 156-205 182-231 (309)
70 2b7e_A PRE-mRNA processing pro 22.6 44 0.0015 24.5 2.1 49 6-56 2-55 (59)
71 3zxf_A Galectin-7; sugar bindi 21.3 1.2E+02 0.0041 25.5 5.1 43 292-334 9-59 (138)
72 1uzc_A Hypothetical protein FL 21.0 81 0.0028 23.8 3.4 52 3-56 11-65 (71)
73 2fiy_A Protein FDHE homolog; F 20.8 72 0.0024 31.1 3.9 10 138-147 181-190 (309)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=1e-65 Score=519.28 Aligned_cols=273 Identities=23% Similarity=0.377 Sum_probs=161.0
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--C--CCCCCCCCccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--L--SNTSQGVDPFE 79 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~--~~~~~~~d~~d 79 (461)
++.++||+|||+||++||||+|++++|+++|++|++|||||+||++|+.||+|+..+..+++++ + +.+..+.++.|
T Consensus 40 as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~~f~~~~f~d 119 (329)
T 3lz8_A 40 DDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDD 119 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccccccCCcCCCchhh
Confidence 6789999999999999999999988999999999999999999999999999965432211110 0 11111235678
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccC
Q 012541 80 LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSC 159 (461)
Q Consensus 80 ~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C 159 (461)
+|++|||+.+ .+ + .+..+.+|.|++++|.|||+|+|+|++++|.+.+.+.| |
T Consensus 120 iF~~~Fg~~g--~~-----~-----~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g------------ 171 (329)
T 3lz8_A 120 IFSSMFGQQA--HQ-----R-----RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V------------ 171 (329)
T ss_dssp -----------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S------------
T ss_pred hhHhhhcCcC--CC-----C-----CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C------------
Confidence 8888886421 10 0 01225679999999999999999999999999876422 1
Q ss_pred CCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCC
Q 012541 160 KACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR 239 (461)
Q Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~ 239 (461)
.|. ..+++.++++|+||||+++|++|+|+|+|+++.+
T Consensus 172 -----~G~--------------------------------------v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~ 208 (329)
T 3lz8_A 172 -----FGM--------------------------------------IESETPKTLNVKIPAGVVDGQRIRLKGQGTPGEN 208 (329)
T ss_dssp -----CC---------------------------------------CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC--
T ss_pred -----CeE--------------------------------------EEEecceEEEEeCCCCCCCCCEEEEcccccCCCC
Confidence 111 1123356899999999999999999999999877
Q ss_pred CCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCC
Q 012541 240 RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319 (461)
Q Consensus 240 g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~ 319 (461)
++.+|||||+|+|++|+.|+|+|+||+++++|+|+||+||+++.|+||||++.|+||+|+|||++++|+|+|||.. +
T Consensus 209 gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~GmP~~---~ 285 (329)
T 3lz8_A 209 GGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK---T 285 (329)
T ss_dssp -CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS---S
T ss_pred CCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcCCCCCCC---C
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999975 3
Q ss_pred CCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFL 350 (461)
Q Consensus 320 ~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~ 350 (461)
.+|||||+|+|+||++||++|+++|++|++.
T Consensus 286 ~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~ 316 (329)
T 3lz8_A 286 HTGDLFAVIKIVMPTKPDEKARELWQQLAAA 316 (329)
T ss_dssp CBCCEEEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6999999999999999999999999999993
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=3.3e-60 Score=462.25 Aligned_cols=233 Identities=24% Similarity=0.476 Sum_probs=209.0
Q ss_pred CCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcce-eeeecCCC
Q 012541 109 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI-SQVSTCSK 187 (461)
Q Consensus 109 ~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~ 187 (461)
+.+++|++++|+|||||||+|++++|.+.+.+.|++|+|+|++.+. ..+|+.|+|+|+++..+++.+ ++ ++.++|+.
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 4679999999999999999999999999999999999999999888 599999999999988888776 44 44679999
Q ss_pred CCCccEEE--eeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541 188 CGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 265 (461)
Q Consensus 188 C~G~G~~i--~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 265 (461)
|+|+|++| .++|..|+|.|++.+.++++|+||||+++|++|+|+|+|+++ +++.+|||||+|++++|+.|+|+|+||
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~-~~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQA-PDVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC-TTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCC-CCCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999 889999999999999999999999999999999999999996 456899999999999999999999999
Q ss_pred EEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCC--CChhH
Q 012541 266 FSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKD--ISDPE 340 (461)
Q Consensus 266 ~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~--ls~~q 340 (461)
|++++|||+|||||++++|+||||+ +.|+||+| +|||++++|+|+|||..+++ .+|||||+|+|+||++ ||++|
T Consensus 165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q 243 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN 243 (248)
T ss_dssp EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence 9999999999999999999999995 79999999 99999999999999987654 7899999999999999 99999
Q ss_pred HHHHH
Q 012541 341 RALVE 345 (461)
Q Consensus 341 ~~lle 345 (461)
+++|+
T Consensus 244 ~~~l~ 248 (248)
T 1nlt_A 244 LKKLE 248 (248)
T ss_dssp -----
T ss_pred HHhhC
Confidence 99885
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=3.6e-46 Score=347.03 Aligned_cols=178 Identities=21% Similarity=0.364 Sum_probs=158.9
Q ss_pred CcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCc
Q 012541 112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 191 (461)
Q Consensus 112 g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 191 (461)
++|++++|+|||||||+|+++++.+.+.
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~---------------------------------------------------- 29 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHK---------------------------------------------------- 29 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEE----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecc----------------------------------------------------
Confidence 4689999999999999999999987532
Q ss_pred cEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeec
Q 012541 192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV 271 (461)
Q Consensus 192 G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I 271 (461)
|..|+|.|++.+.++++|+||||+++|++|+|+|+|+++. ++.+|||||+|++++|+.|+|+|+|||++++|
T Consensus 30 -------c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 30 -------RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp -------EECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred -------cCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 3344445555667899999999999999999999999976 67899999999999999999999999999999
Q ss_pred CHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHh
Q 012541 272 DYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAF 349 (461)
Q Consensus 272 sl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~ 349 (461)
||+||+||+++.|+||||+ +.|+||+++|||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|++|+.
T Consensus 102 sl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~~ 180 (181)
T 3agx_A 102 SLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180 (181)
T ss_dssp EHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHSC
T ss_pred CHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhcc
Confidence 9999999999999999995 78999999999999999999999876556799999999999999999999999999873
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.3e-45 Score=339.53 Aligned_cols=177 Identities=21% Similarity=0.373 Sum_probs=163.7
Q ss_pred CCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCC
Q 012541 111 FGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGG 190 (461)
Q Consensus 111 ~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 190 (461)
+++|++++|.|||||||+|+++++.+.+.+.|+.
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 3679999999999999999999999999888741
Q ss_pred ccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeee
Q 012541 191 DGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 270 (461)
Q Consensus 191 ~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~ 270 (461)
|++.+.++++|+||||+++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+|||++++
T Consensus 36 ---------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~ 100 (180)
T 2q2g_A 36 ---------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVT 100 (180)
T ss_dssp ---------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred ---------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEE
Confidence 23445689999999999999999999999997778899999999999999999999999999999
Q ss_pred cCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHH
Q 012541 271 VDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348 (461)
Q Consensus 271 Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~ 348 (461)
|||+||+||+++.|+||||+ +.|+||+++|||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|++|+
T Consensus 101 Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~ 179 (180)
T 2q2g_A 101 IPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179 (180)
T ss_dssp EEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred cCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 99999999999999999995 7899999999999999999999987666679999999999999999999999999986
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=7.8e-43 Score=321.49 Aligned_cols=169 Identities=21% Similarity=0.429 Sum_probs=155.0
Q ss_pred cccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 012541 113 LDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 192 (461)
Q Consensus 113 ~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 192 (461)
+|++++|.|||+|||+|+++++++.+. | +
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~--~--~----------------------------------------------- 29 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRK--G--P----------------------------------------------- 29 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEE--E--T-----------------------------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEe--c--C-----------------------------------------------
Confidence 478999999999999999999999875 1 0
Q ss_pred EEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecC
Q 012541 193 KIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVD 272 (461)
Q Consensus 193 ~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Is 272 (461)
.|.+ +.++++|+||||+.+|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+|||++++|+
T Consensus 30 ------------~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 96 (170)
T 1c3g_A 30 ------------HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96 (170)
T ss_dssp ------------TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred ------------CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence 0112 457899999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHH
Q 012541 273 YTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE 345 (461)
Q Consensus 273 l~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle 345 (461)
|+||+||+++.|+||||+ +.|+||+++|||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|+
T Consensus 97 l~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp HHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred HHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 999999999999999996 7999999999999999999999987666679999999999999999999998874
No 6
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.94 E-value=8.2e-27 Score=199.19 Aligned_cols=96 Identities=22% Similarity=0.363 Sum_probs=90.6
Q ss_pred EecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEc
Q 012541 253 DEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLI 332 (461)
Q Consensus 253 ~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~ 332 (461)
++|+.|+|+|+||+++++|+|.||++|+++.|+|+||.+.|+||+|++||++++|+|+|||. . +.+|||||+|+|+|
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~--~~~GDL~v~~~V~~ 78 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-K--THTGDLFAVIKIVM 78 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-S--SCBCCEEEEEEECC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-C--CCCcCEEEEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999997 3 27999999999999
Q ss_pred CCCCChhHHHHHHHHHhhc
Q 012541 333 PKDISDPERALVEEIAFLK 351 (461)
Q Consensus 333 P~~ls~~q~~lle~l~~~~ 351 (461)
|++||++|+++|++|+++.
T Consensus 79 P~~Ls~~q~~~l~~l~~~~ 97 (109)
T 3i38_A 79 PTKPDEKARELWQQLAAAE 97 (109)
T ss_dssp CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999974
No 7
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-24 Score=189.30 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=85.2
Q ss_pred cccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcC
Q 012541 257 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP 333 (461)
Q Consensus 257 ~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P 333 (461)
.|+|+|+||+++++|+|.+|+||+++.|+||||+ +.|+||+| +|||++++|+|+|||..+++ .+|||||+|+|++|
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 4899999999999999999999999999999996 79999999 99999999999999987654 78999999999999
Q ss_pred CC--CChhHHHHHHHHHhhcC
Q 012541 334 KD--ISDPERALVEEIAFLKS 352 (461)
Q Consensus 334 ~~--ls~~q~~lle~l~~~~~ 352 (461)
+. |+++|+++|++|+....
T Consensus 80 ~~~~ls~~q~~~l~~l~~~~~ 100 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPPRI 100 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCCCC
T ss_pred CCCCCCHHHHHHHHHHccccc
Confidence 99 99999999999997553
No 8
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.5e-23 Score=174.63 Aligned_cols=103 Identities=30% Similarity=0.623 Sum_probs=95.2
Q ss_pred CcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCc
Q 012541 112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 191 (461)
Q Consensus 112 g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 191 (461)
|.|++++|.|||||||+|++++|.+.+.+.|+.|+|+|++++....+|+.|+|+|++...+ |+|++.++|+.|+|+
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence 4678999999999999999999999999999999999999988889999999999987653 668888999999999
Q ss_pred cEEEeeeccccCCceEEeecceEEEEe
Q 012541 192 GKIIIDHCRRCGGNGEVQSKRSMKVVI 218 (461)
Q Consensus 192 G~~i~~~C~~C~G~g~v~~~k~l~V~I 218 (461)
|+++.++|+.|+|.|++.+.+.|+|+|
T Consensus 77 G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 999999999999999999988888865
No 9
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.83 E-value=1.1e-21 Score=165.70 Aligned_cols=85 Identities=36% Similarity=0.545 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY 81 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F 81 (461)
-++.++||+|||+||++||||+|+ +++++++|++|++||+||+||.+|+.||++|++++..+..++++.+.+.++.++|
T Consensus 14 ~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~~~~~~~f 93 (103)
T 1bq0_A 14 TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIF 93 (103)
T ss_dssp SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----------------
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCCCCCCCCCHHHHH
Confidence 368899999999999999999998 4789999999999999999999999999999998875422111111123566778
Q ss_pred ccccCC
Q 012541 82 SAFFGG 87 (461)
Q Consensus 82 ~~~Fg~ 87 (461)
+.+|+.
T Consensus 94 ~~~f~~ 99 (103)
T 1bq0_A 94 GDVFGD 99 (103)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 888854
No 10
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.78 E-value=8.7e-20 Score=145.89 Aligned_cols=61 Identities=51% Similarity=0.827 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~ 63 (461)
-++.++|++||++||++||||+|++++++++|++|++||+||+||.+|+.||++|.+++.+
T Consensus 14 ~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 14 GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 3688999999999999999999998899999999999999999999999999999988764
No 11
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.7e-20 Score=149.44 Aligned_cols=62 Identities=42% Similarity=0.633 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 64 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~ 64 (461)
-++.++||+|||+||++||||+|++++++++|++|++||+||+||.+|+.||++|+.++.++
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 18 SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 36889999999999999999999998999999999999999999999999999999887654
No 12
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-19 Score=141.94 Aligned_cols=59 Identities=41% Similarity=0.593 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~ 61 (461)
-++.++||+||++||++||||+|+.++++++|++|++||+||+||.+|+.||++|+.+.
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 18 GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp TCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 36789999999999999999999988999999999999999999999999999998653
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-19 Score=145.35 Aligned_cols=62 Identities=42% Similarity=0.541 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 64 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~ 64 (461)
-++.++||+||++||++||||+|++ +.++++|++|++||+||+||.+|+.||++|.+++..+
T Consensus 20 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 83 (92)
T 2dmx_A 20 SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG 83 (92)
T ss_dssp TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 3678999999999999999999985 4789999999999999999999999999999887653
No 14
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-19 Score=141.16 Aligned_cols=59 Identities=39% Similarity=0.595 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~ 61 (461)
-++.++||+||++||++||||+|+ +++++++|++|++||+||+||.+|+.||++|..+.
T Consensus 18 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 18 NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 368899999999999999999998 47899999999999999999999999999997653
No 15
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-19 Score=142.15 Aligned_cols=60 Identities=37% Similarity=0.604 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 62 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~ 62 (461)
-++.++||+||++||++||||+|++ +.++++|++|++||+||+||.+|+.||++|+.++.
T Consensus 20 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 81 (82)
T 2ej7_A 20 QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSS 81 (82)
T ss_dssp TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSCC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccccC
Confidence 3688999999999999999999985 47899999999999999999999999999987654
No 16
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=7.4e-19 Score=144.18 Aligned_cols=58 Identities=40% Similarity=0.638 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g 60 (461)
-++.++||+|||+||++||||+|+++.++++|++|++||+||+||.+|+.||++|+.+
T Consensus 28 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 28 TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp TCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 3678999999999999999999998899999999999999999999999999999764
No 17
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-18 Score=143.39 Aligned_cols=59 Identities=36% Similarity=0.570 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 64 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~ 64 (461)
++.++|++||++||++||||+|++ ++++|++|++||+||+||.+|+.||++|++++..+
T Consensus 20 as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 20 ANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp CCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 688999999999999999999963 46799999999999999999999999999887643
No 18
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-18 Score=147.56 Aligned_cols=59 Identities=25% Similarity=0.420 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 62 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~ 62 (461)
+++++||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|++++.
T Consensus 32 as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 32 SSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 67899999999999999999998 588999999999999999999999999999987764
No 19
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-18 Score=143.73 Aligned_cols=61 Identities=44% Similarity=0.698 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~ 63 (461)
-++.++||+||++||++||||+|++ +.|+++|++|++||+||+||.+|+.||++|.+++.+
T Consensus 13 ~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 13 SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 3688999999999999999999985 468999999999999999999999999999888764
No 20
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.2e-18 Score=142.17 Aligned_cols=54 Identities=37% Similarity=0.505 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
-++.++||+|||+||++||||+|+ +++++++|++|++||+||+||.+|+.||++
T Consensus 28 ~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 28 TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 368899999999999999999997 578999999999999999999999999984
No 21
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=4.3e-18 Score=145.15 Aligned_cols=60 Identities=37% Similarity=0.611 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 62 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~ 62 (461)
-++.++||+||++||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|..++.
T Consensus 28 ~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 28 NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 368899999999999999999998 478999999999999999999999999999987764
No 22
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.70 E-value=6.1e-18 Score=133.76 Aligned_cols=54 Identities=43% Similarity=0.627 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 59 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~ 59 (461)
++.++|++||++||++||||+|++ ++++|++|++||+||+||.+|+.||++|++
T Consensus 20 a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 20 ASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp CCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 678999999999999999999964 468999999999999999999999999863
No 23
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.69 E-value=5.7e-18 Score=159.19 Aligned_cols=61 Identities=38% Similarity=0.606 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 64 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~ 64 (461)
++.++||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||+||++++...
T Consensus 14 a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~ 75 (210)
T 3apq_A 14 ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 75 (210)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence 68899999999999999999997 58899999999999999999999999999999887643
No 24
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.66 E-value=3.1e-17 Score=135.86 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC-------hhhHHHHHHHHHHHhhccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-------~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~ 58 (461)
-++.++||+||++||++||||+|+. +.++++|++|++||+||+||.+|+.||++..
T Consensus 27 ~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 27 SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 3688999999999999999999873 5789999999999999999999999999754
No 25
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.63 E-value=5.7e-17 Score=138.11 Aligned_cols=55 Identities=33% Similarity=0.380 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHHHhhcccccccccccccccc
Q 012541 5 MPRCRRSRPLTESLLYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 59 (461)
Q Consensus 5 ~~~~Ir~Ayr~LA~kyHPD~N~~----~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~ 59 (461)
+.++||+|||+||++||||++++ +.|+++|++|++||+||+||.+|+.||+++..
T Consensus 29 s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 29 DKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp CHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 78999999999999999999985 67899999999999999999999999998854
No 26
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.2e-16 Score=127.27 Aligned_cols=50 Identities=24% Similarity=0.265 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 52 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~ 52 (461)
-++.++||+|||+||++||||+|++++++++|++|++||+||+||.+|+.
T Consensus 38 ~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 38 GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 36889999999999999999999998999999999999999999999974
No 27
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.59 E-value=1.6e-16 Score=136.42 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=47.9
Q ss_pred CCh--HHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccc
Q 012541 4 RMP--RCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58 (461)
Q Consensus 4 ~~~--~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~ 58 (461)
+++ ++||+|||+||++||||+|++ +++|++|++||+||+||.+|+.||.||.
T Consensus 20 as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 20 AWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp SCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred CCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 455 899999999999999999975 4799999999999999999999999885
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.59 E-value=4.9e-16 Score=124.80 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=48.8
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~ 61 (461)
.++.++||+|||+||++||||+|.+ +++|++|++|||||+|+.+|.. |.||++++
T Consensus 24 ~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~ 78 (79)
T 1faf_A 24 WGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLR-MNLGGTGF 78 (79)
T ss_dssp TTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence 3789999999999999999999853 5899999999999999999988 56887654
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.57 E-value=2.3e-16 Score=144.57 Aligned_cols=50 Identities=28% Similarity=0.400 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccc
Q 012541 6 PRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58 (461)
Q Consensus 6 ~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~ 58 (461)
.++||+|||+||++||||+|++ +++|++|++|||||+||.+|+.||+||.
T Consensus 27 ~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 27 IPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 5999999999999999999975 3789999999999999999999999996
No 30
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.54 E-value=5.4e-15 Score=118.41 Aligned_cols=78 Identities=38% Similarity=0.856 Sum_probs=70.0
Q ss_pred ceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEE
Q 012541 129 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV 208 (461)
Q Consensus 129 G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v 208 (461)
|++++|.+.+.+.|+.|+|+|........+|+.|+|+|.++..+ |+|++..+|+.|+|.|+++..+|..|+|.|++
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 67788999999999999999998877788999999999987644 77887889999999999999999999999988
Q ss_pred ee
Q 012541 209 QS 210 (461)
Q Consensus 209 ~~ 210 (461)
.+
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 54
No 31
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-15 Score=135.71 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=50.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCCh-------hhHHHHHHHHHHHhhccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSP-------GAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~-------~aeekFkeI~eAYEVLsD~~KR~~YD~~G~ 58 (461)
-+++++||+|||+||++||||+++.+ .|+++|++|++||+||+||.+|+.||.++.
T Consensus 21 ~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 21 SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 36789999999999999999999743 367999999999999999999999998764
No 32
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.53 E-value=4.3e-15 Score=121.71 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYD 54 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD 54 (461)
-++.++||+|||+||++||||+|++ ++|+++|++|++|||||+|...|..+.
T Consensus 27 ~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~~ 80 (88)
T 1iur_A 27 KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNA 80 (88)
T ss_dssp SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3688999999999999999999986 468999999999999999998885443
No 33
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.48 E-value=7.9e-15 Score=120.79 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCCh----hhHHHHHHHHHHHhhccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSP----GAEEKFKEISSAYEVLSD 46 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~----~aeekFkeI~eAYEVLsD 46 (461)
.+++++||+|||+||++||||+|++. .|+++|++|++|||||.+
T Consensus 44 ~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 44 LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999853 389999999999999976
No 34
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.47 E-value=5.5e-15 Score=125.19 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCh--------hhHHHHHHHHHHHhhccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSP--------GAEEKFKEISSAYEVLSDDE 48 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~--------~aeekFkeI~eAYEVLsD~~ 48 (461)
+++.+||+|||+||++||||+|+++ .|+++|++|++|||||||+.
T Consensus 52 As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 52 IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 7899999999999999999998732 47899999999999999986
No 35
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.47 E-value=2.5e-15 Score=167.15 Aligned_cols=62 Identities=37% Similarity=0.596 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 64 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~ 64 (461)
-++.++||+|||+||++||||+|+ +++|+++|++|++||+||+||++|+.||+||++++..+
T Consensus 32 ~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 32 TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 368999999999999999999997 57899999999999999999999999999999887654
No 36
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.46 E-value=5.3e-15 Score=136.92 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
-+++++|++|||+||++||||+|++ |+++|++|++||+||+||.+|+.||..
T Consensus 29 ~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 29 TIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3688999999999999999999975 789999999999999999999999984
No 37
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.45 E-value=1.7e-14 Score=136.21 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 55 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~ 55 (461)
+++++||+|||+||++||||+|++. .|+++|++|++||+||+||.+|+.||.
T Consensus 57 a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 57 VDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 5789999999999999999999742 266799999999999999999999995
No 38
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.44 E-value=2.3e-14 Score=131.54 Aligned_cols=53 Identities=23% Similarity=0.130 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccccccc
Q 012541 5 MPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDRFG 57 (461)
Q Consensus 5 ~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~~G 57 (461)
++.+|++|||+||++||||+|++. .|.++|++|++||+||+||.+|+.||...
T Consensus 16 ~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 16 DTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999999999999842 25679999999999999999999999864
No 39
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.43 E-value=3e-14 Score=131.16 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCChh------hHHHHHHHHHHHhhccccccccccccc
Q 012541 6 PRCRRSRPLTESLLYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRF 56 (461)
Q Consensus 6 ~~~Ir~Ayr~LA~kyHPD~N~~~~------aeekFkeI~eAYEVLsD~~KR~~YD~~ 56 (461)
+++|++|||+||++||||+|++.. |.++|++|++||+||+||.+|+.||..
T Consensus 20 ~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp HHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 899999999999999999997432 778999999999999999999999974
No 40
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.4e-13 Score=106.79 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 51 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~ 51 (461)
++.++|++|||+||++||||+|. +.++|++|++|||||+|+..|+
T Consensus 27 a~~~eIk~ayr~l~~~~HPDk~g---~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 27 LTKKKLKEVHRKIMLANHPDKGG---SPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGTC---CHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHhhhhhcC
Confidence 68899999999999999999974 3479999999999999998774
No 41
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.31 E-value=2e-12 Score=125.39 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=45.2
Q ss_pred cCCceEEee-c-ceEEEEeCCC--CCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccc--ccccccce
Q 012541 202 CGGNGEVQS-K-RSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNL 265 (461)
Q Consensus 202 C~G~g~v~~-~-k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~--f~R~G~DL 265 (461)
|+++-.+.. . +.++|+||+| +++|++++|+|+|.+...+...|||||+|+|..+.. +..+..+|
T Consensus 177 lG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~ 246 (248)
T 1nlt_A 177 AGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK 246 (248)
T ss_dssp HCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred cCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence 466666665 3 3699999999 999999999999998654435799999999998876 66554443
No 42
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=2e-10 Score=97.63 Aligned_cols=52 Identities=25% Similarity=0.555 Sum_probs=43.8
Q ss_pred eEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceE
Q 012541 213 SMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 266 (461)
Q Consensus 213 ~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 266 (461)
.++|+||+|+++|++++|+|+|++. .+ ..|||||+|+|..+.....+..+++
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l 90 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELW 90 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHH
T ss_pred CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHH
Confidence 4789999999999999999999986 33 7999999999998887665554443
No 43
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=98.88 E-value=7.9e-10 Score=95.64 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=41.8
Q ss_pred ceEEEEeCCC--CCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccc--ccccccceE
Q 012541 212 RSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNLF 266 (461)
Q Consensus 212 k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~--f~R~G~DL~ 266 (461)
+.++|+||+| +++|++++|+|+|++...+...|||||+++|..+.. +..+..+++
T Consensus 34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l 92 (121)
T 1xao_A 34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKL 92 (121)
T ss_dssp CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHH
T ss_pred CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
Confidence 3589999999 999999999999998654446799999999998876 665554443
No 44
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.54 E-value=4e-08 Score=90.69 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=66.4
Q ss_pred CCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCC
Q 012541 110 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 189 (461)
Q Consensus 110 ~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 189 (461)
+.|.|+.+++.|||.||+.|+++++..-
T Consensus 90 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 117 (181)
T 3agx_A 90 RDGSDVIYPARISLREALCGCTVNVPTL---------------------------------------------------- 117 (181)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred eeCCcEEEEEEcCHHHHhCCCEEEeECC----------------------------------------------------
Confidence 4688999999999999999987665321
Q ss_pred CccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCC-CCCCccEEEEEEEEecccccccccc
Q 012541 190 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR-RSLAGDLFVALHVDEKQGIHRDGLN 264 (461)
Q Consensus 190 G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~-g~~~GDL~V~i~v~~h~~f~R~G~D 264 (461)
. .+.++|.||+|+++|++++|+|+|.+... .+..|||||+++|..+..+..+..+
T Consensus 118 ---------------d-----G~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~ 173 (181)
T 3agx_A 118 ---------------D-----GRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRT 173 (181)
T ss_dssp ---------------T-----SCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHH
T ss_pred ---------------C-----CCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence 0 13578999999999999999999998653 3567999999999988766544433
No 45
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.48 E-value=1.5e-07 Score=94.70 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=51.4
Q ss_pred cccceEEeeecCHHHHHcCCeeEEeee------C--------CeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEE
Q 012541 261 DGLNLFSKISVDYTEAILGTSMEVETV------E--------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLF 326 (461)
Q Consensus 261 ~G~DL~~~~~Isl~eAllG~~i~V~tl------d--------G~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V 326 (461)
.|.||++++.|+|.||+.|.+..|..- . ..++|+||+|+++|++|+|+|+|.|...+ +..|||||
T Consensus 139 ~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~v 217 (329)
T 3lz8_A 139 RGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLWL 217 (329)
T ss_dssp CCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEEE
T ss_pred CCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEEE
Confidence 455666666666666666655444321 1 13689999999999999999999986542 46899999
Q ss_pred EEEEEcCCC
Q 012541 327 IVNVLIPKD 335 (461)
Q Consensus 327 ~f~V~~P~~ 335 (461)
+|+|.-...
T Consensus 218 ~I~v~~h~~ 226 (329)
T 3lz8_A 218 VIHIAPHPL 226 (329)
T ss_dssp EECCCCCSS
T ss_pred EEEEecCCc
Confidence 988875543
No 46
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.47 E-value=3.8e-07 Score=83.28 Aligned_cols=71 Identities=13% Similarity=0.257 Sum_probs=58.8
Q ss_pred ceEEeeecCHHHHHcCCeeEEeee----CC-----eEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCC
Q 012541 264 NLFSKISVDYTEAILGTSMEVETV----EG-----MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPK 334 (461)
Q Consensus 264 DL~~~~~Isl~eAllG~~i~V~tl----dG-----~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~ 334 (461)
|+.+++.|||.||+.|++..|.-- .| .++|+||+|+..|++++++|+|-+... .+..|||||+++|.-..
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~-gg~~GDl~v~i~v~~h~ 80 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQ-TGRRKTLQFVIQEKSHP 80 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSS-SSCBCEEEEEEEECCCS
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCC-CCccccEEEEEEEccCC
Confidence 789999999999999999887643 12 358999999999999999999986433 24689999999997654
Q ss_pred C
Q 012541 335 D 335 (461)
Q Consensus 335 ~ 335 (461)
.
T Consensus 81 ~ 81 (170)
T 1c3g_A 81 N 81 (170)
T ss_dssp S
T ss_pred c
Confidence 4
No 47
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.41 E-value=5.8e-07 Score=82.80 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=59.5
Q ss_pred ccceEEeeecCHHHHHcCCeeEEeeeC------------CeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEE
Q 012541 262 GLNLFSKISVDYTEAILGTSMEVETVE------------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVN 329 (461)
Q Consensus 262 G~DL~~~~~Isl~eAllG~~i~V~tld------------G~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~ 329 (461)
+.|+.+++.|||.||+.|++..|.--. -.++|+||+|+..|++++++|+|-+... .+..|||||+++
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~ 81 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQ 81 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEE
Confidence 679999999999999999998776321 2358999999999999999999977222 246899999999
Q ss_pred EEcCCCC
Q 012541 330 VLIPKDI 336 (461)
Q Consensus 330 V~~P~~l 336 (461)
|.-...+
T Consensus 82 ~~~h~~F 88 (180)
T 2q2g_A 82 TKTHPRF 88 (180)
T ss_dssp ECCCSSC
T ss_pred EEecccE
Confidence 9755443
No 48
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=98.05 E-value=9.4e-08 Score=103.69 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=59.9
Q ss_pred ccccccccceeecceeeeeEEeeeeeccCCCCCCccccc---ccccCCCcCCccEEEEee--------ecCCcce-eeee
Q 012541 116 RYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN---CIQSCKACWGRGGVLKTQ--------RTPFGLI-SQVS 183 (461)
Q Consensus 116 ~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~---~~~~C~~C~G~G~~~~~~--------~~~~g~~-~~~~ 183 (461)
.+.+.|+|+|+++|.++++++.+.+.|..|+|+|++.+. .+.+|+.|+|+....... ..-.|.| +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 478899999999999999999999999999999999887 689999999994211100 0111333 3346
Q ss_pred cCCCCCCccE
Q 012541 184 TCSKCGGDGK 193 (461)
Q Consensus 184 ~C~~C~G~G~ 193 (461)
.|..||..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 7999998774
No 49
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.68 E-value=1.2e-05 Score=58.96 Aligned_cols=30 Identities=30% Similarity=0.798 Sum_probs=26.8
Q ss_pred eecCCCCCCccEEEeeeccccCCceEEeec
Q 012541 182 VSTCSKCGGDGKIIIDHCRRCGGNGEVQSK 211 (461)
Q Consensus 182 ~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~ 211 (461)
.++|+.|+|+|+++.++|+.|+|.|++.+.
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 578999999999999999999999988664
No 50
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.61 E-value=4.9e-05 Score=58.17 Aligned_cols=40 Identities=13% Similarity=-0.242 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccc
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSD 46 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD 46 (461)
+++++|++|||+|-.++|||+..++ -.+..|++|+|+|-.
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkGGS~---yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKGGSF---YLQSKVYRAAERLKW 58 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTCCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHHH
Confidence 5789999999999999999997443 567789999999854
No 51
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.52 E-value=5e-05 Score=59.96 Aligned_cols=47 Identities=30% Similarity=0.800 Sum_probs=37.4
Q ss_pred cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe--------eeccccCCceEEe
Q 012541 154 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQ 209 (461)
Q Consensus 154 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~g~v~ 209 (461)
.....|+.|+|+|... .....+|+.|+|+|.++. ..|+.|+|.|.+.
T Consensus 9 ~~~~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 9 PTLEECDVCHGSGAKP---------GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp CCEEECGGGTTTSBCS---------SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred ccceECCCCcccccCC---------CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 3568999999999742 122468999999999875 4799999999874
No 52
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=4.6e-05 Score=63.64 Aligned_cols=47 Identities=32% Similarity=0.820 Sum_probs=37.3
Q ss_pred eeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee
Q 012541 139 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~ 197 (461)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~ 96 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQK 96 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEE
Confidence 468999999996521 23578999999998753 579999999988653
No 53
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.42 E-value=1.6e-05 Score=58.44 Aligned_cols=38 Identities=32% Similarity=0.637 Sum_probs=26.1
Q ss_pred eeeccCCCCCCcccccccccCCCcCCccEEEEee-ecCCcce
Q 012541 139 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQ-RTPFGLI 179 (461)
Q Consensus 139 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~-~~~~g~~ 179 (461)
...|+.|+|+|.... .+|+.|+|.|.+...+ ++++|++
T Consensus 9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~qG~~~~g~~ 47 (53)
T 2bx9_A 9 EVACPKCERAGEIEG---TPCPACSGKGVILTAQGYTLLDFI 47 (53)
T ss_dssp EEECTTTTTSSEETT---EECTTTTTSSEEECHHHHHHHHHH
T ss_pred cccCCCCcceeccCC---CCCccCCCCccEEEEecccHHHHH
Confidence 357888888887753 5788888888876655 4454444
No 54
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.97 E-value=0.00033 Score=51.29 Aligned_cols=28 Identities=32% Similarity=0.769 Sum_probs=18.4
Q ss_pred ecCCCCCCccEEEeeeccccCCceEEee
Q 012541 183 STCSKCGGDGKIIIDHCRRCGGNGEVQS 210 (461)
Q Consensus 183 ~~C~~C~G~G~~i~~~C~~C~G~g~v~~ 210 (461)
.+|+.|+|+|.++..+|+.|+|.|.+..
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred ccCCCCcceeccCCCCCccCCCCccEEE
Confidence 4666666666666666777777766543
No 55
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.39 E-value=0.0018 Score=47.38 Aligned_cols=27 Identities=37% Similarity=1.048 Sum_probs=14.8
Q ss_pred eeccCCCCCCcccccccccCCCcCCccEEE
Q 012541 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVL 169 (461)
Q Consensus 140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~ 169 (461)
.+|+.|+|+|.... ..|+.|+|+|.+.
T Consensus 10 ~~C~~C~GsG~~i~---~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 10 TTCPNCNGSGREEP---EPCPKCLGKGVIL 36 (53)
T ss_dssp EECTTTTTSCEETT---EECTTTTTSSEEE
T ss_pred ccCcCCcccccCCC---CcCCCCCCcEEEE
Confidence 45666666665432 4455555555543
No 56
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=80.57 E-value=0.63 Score=45.88 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCh
Q 012541 4 RMPRCRRSRPLTESLLYHPDINKSP 28 (461)
Q Consensus 4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~ 28 (461)
+..++|+++|+++|+++|||+++++
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~~~~ 418 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNFQNE 418 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGCCSH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 3578999999999999999998754
No 57
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=68.09 E-value=14 Score=37.65 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred CCeeEEeeeCCeEEEEeCCCCCCCCEEEEcc
Q 012541 279 GTSMEVETVEGMKDLRIPSGVQPGDTVKLQQ 309 (461)
Q Consensus 279 G~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g 309 (461)
.+++.||-|+ |.|+||++.|..-.|.|
T Consensus 294 ta~i~IPEL~----lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 294 TCSVEIPELE----FELGMAVLGGKFTTLEG 320 (404)
T ss_dssp TCEEEEGGGT----EEECTTTTCSEEEEHHH
T ss_pred ceEEEeeeee----EEecCCCCCceEEeHHH
Confidence 4567777764 88899988887777766
No 58
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=66.26 E-value=9 Score=39.03 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCeeEEeeeCCeEEEEeCCCCCCCCEEEEccC
Q 012541 279 GTSMEVETVEGMKDLRIPSGVQPGDTVKLQQM 310 (461)
Q Consensus 279 G~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~ 310 (461)
.+++.||-|+ +.||||++-|.+-.|.|-
T Consensus 86 tati~IPEL~----~eI~pg~~~G~iTTVEGl 113 (404)
T 2qkd_A 86 SATTRIPELD----FEIPAFSQKGALTTVEGL 113 (404)
T ss_dssp TCEEEEGGGT----EEECTTSSCCEEEEHHHH
T ss_pred CcEEEeeeee----EEecCccCCceEEeHHHH
Confidence 4567777764 889999988888887663
No 59
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=54.96 E-value=4.9 Score=31.21 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCC---hhhHHHHHHHHHHHhhccc-ccccccccccc
Q 012541 5 MPRCRRSRPLTESLLYHPDINKS---PGAEEKFKEISSAYEVLSD-DEKRSVYDRFG 57 (461)
Q Consensus 5 ~~~~Ir~Ayr~LA~kyHPD~N~~---~~aeekFkeI~eAYEVLsD-~~KR~~YD~~G 57 (461)
=.+.++.+|+.|-+...|..... ..+..+|..-. +|..+.+ .+.+.+|+.|=
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFM 62 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHH
Confidence 35778999999999988988764 56777887665 7999866 46677888773
No 60
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=40.71 E-value=53 Score=31.29 Aligned_cols=37 Identities=27% Similarity=0.671 Sum_probs=22.3
Q ss_pred ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEE
Q 012541 155 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195 (461)
Q Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i 195 (461)
..-.|..|+....+ .+ ..+.+.....|+.|++.|..+
T Consensus 133 ~~f~C~~C~~~~~v---~~-~~~~~~~P~~Cp~C~~~~f~l 169 (279)
T 1ltl_A 133 AVFECRGCMRHHAV---TQ-STNMITEPSLCSECGGRSFRL 169 (279)
T ss_dssp EEEEETTTCCEEEE---EC-SSSSCCCCSCCTTTCCCCEEE
T ss_pred EEEEcCCCCCEEEE---Ee-cCCcccCCCcCCCCCCCCcEE
Confidence 34578899754322 11 234455557899998888443
No 61
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=39.22 E-value=1.1e+02 Score=28.87 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=15.2
Q ss_pred eeccCCCCCCccc-----ccccccCCCcCCcc
Q 012541 140 ETCDSCGGTGAKS-----SNCIQSCKACWGRG 166 (461)
Q Consensus 140 ~~C~~C~GsG~~~-----~~~~~~C~~C~G~G 166 (461)
-.|..|+...... -..+..|+.|++.|
T Consensus 135 f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 135 FECRGCMRHHAVTQSTNMITEPSLCSECGGRS 166 (279)
T ss_dssp EEETTTCCEEEEECSSSSCCCCSCCTTTCCCC
T ss_pred EEcCCCCCEEEEEecCCcccCCCcCCCCCCCC
Confidence 3677776443221 12446677777777
No 62
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=37.38 E-value=1.6 Score=46.10 Aligned_cols=66 Identities=23% Similarity=0.401 Sum_probs=38.7
Q ss_pred eccCCCCCCcccc----cccccCCCcCCccEEEEe---eecCCcceeeeecCCCCCCccEEEeeeccccCCce
Q 012541 141 TCDSCGGTGAKSS----NCIQSCKACWGRGGVLKT---QRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 206 (461)
Q Consensus 141 ~C~~C~GsG~~~~----~~~~~C~~C~G~G~~~~~---~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g 206 (461)
.|..||+.+.... .....|-.|++.-..+.. ...+-........|..||-.-......|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 6999999875421 134579999986322110 00010000113689999976654455699998754
No 63
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=35.95 E-value=4.1 Score=42.97 Aligned_cols=65 Identities=18% Similarity=0.392 Sum_probs=37.9
Q ss_pred eccCCCCCCcccc-----cccccCCCcCCccEEEEee-----ecCCcc-eeeeecCCCCCCccEEEeeeccccCCc
Q 012541 141 TCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQ-----RTPFGL-ISQVSTCSKCGGDGKIIIDHCRRCGGN 205 (461)
Q Consensus 141 ~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~-----~~~~g~-~~~~~~C~~C~G~G~~i~~~C~~C~G~ 205 (461)
.|..||+...... .....|..|+......... ..+-.. ......|..||..=......|..|+..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~H~~~~~~C~~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSCSCCSCCCGGGTCCSSSCBCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccccccCCCCCccccCccccCCCccccccChh
Confidence 6999999874322 2457899999764311000 000000 001358999998644444569999875
No 64
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=32.88 E-value=32 Score=26.93 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=29.7
Q ss_pred eeeeccCCCCCCcccccc--cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccc
Q 012541 138 CFETCDSCGGTGAKSSNC--IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRR 201 (461)
Q Consensus 138 r~~~C~~C~GsG~~~~~~--~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~ 201 (461)
+.+.|..|...|-....- +..|-.|...|.+.+....|. ....|-.|+..|.+-. .|+.
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~----~~~~CYnCG~~GH~~r-dC~~ 64 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPF----HTIYCYNCGGKGHFGD-DCKE 64 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCGG-GCSS
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCCC----CCCeecccCCCCcCcc-cCCc
Confidence 456799999999766543 346888888887643222221 1357888888887433 3543
No 65
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=32.61 E-value=1.6e+02 Score=27.62 Aligned_cols=88 Identities=14% Similarity=0.250 Sum_probs=41.1
Q ss_pred ccccC--CCcCCccEEEEee--ecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEE-----eCCCCCCC
Q 012541 155 CIQSC--KACWGRGGVLKTQ--RTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV-----IPPGVSNG 225 (461)
Q Consensus 155 ~~~~C--~~C~G~G~~~~~~--~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~-----IP~Gv~~G 225 (461)
..-.| ..|+.. +... ....+.+.....|+.|+..|...... ..| .......++|. +|+|--+-
T Consensus 140 ~~f~C~~~~C~~~---~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~-~~s----~f~D~Q~ikiQE~pe~vp~G~~Pr 211 (268)
T 2vl6_A 140 ATYKHIHPDCMQE---FEWPEDEEMPEVLEMPTICPKCGKPGQFRLIP-EKT----KLIDWQKAVIQERPEEVPSGQLPR 211 (268)
T ss_dssp CEEEEECTTCCCE---EESSTTSCCCTTCCCCSBCTTTCCBCEEEECG-GGC----EEEEEEEEEEECCGGGSCTTSCCC
T ss_pred EEEECCCCCCCCE---EeeeecccCCCcccCCccCCCCCCCCCEEEec-Ccc----EEEeeEEEEEEeCCCCCCCCCCCc
Confidence 34578 888632 2211 01234455557899998877322211 011 11122344542 45554443
Q ss_pred CEEEEcccccCCCCCCCCccEEEEEEE
Q 012541 226 ATMQIRGEGNFDRRRSLAGDLFVALHV 252 (461)
Q Consensus 226 ~~i~l~G~G~~~~~g~~~GDL~V~i~v 252 (461)
+ +.+-=.++- .....|||-+...=+
T Consensus 212 s-i~v~l~~dL-vd~~~PGDrV~vtGI 236 (268)
T 2vl6_A 212 Q-LEIILEDDL-VDSARPGDRVKVTGI 236 (268)
T ss_dssp E-EEEEEEGGG-TTSSCTTCEEEEEEE
T ss_pred E-EEEEEccCc-cCcccCCCEEEEEEE
Confidence 3 222223332 234578888875443
No 66
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=31.37 E-value=32 Score=27.24 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.6
Q ss_pred EEEcCCCCChhHHHHHHHHHhhcCC
Q 012541 329 NVLIPKDISDPERALVEEIAFLKSP 353 (461)
Q Consensus 329 ~V~~P~~ls~~q~~lle~l~~~~~~ 353 (461)
.+.||..|++.||.++-+++....-
T Consensus 35 ~l~FP~sLs~~eR~~IH~lA~~~GL 59 (86)
T 1msz_A 35 QLEFPPSLNSHDRLRVHQIAEEHGL 59 (86)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHTTE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999999999997754
No 67
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=29.27 E-value=5.4 Score=42.19 Aligned_cols=64 Identities=22% Similarity=0.441 Sum_probs=37.0
Q ss_pred eccCCCCCCccc--c----cccccCCCcCCccEEE-----EeeecCCccee-eeecCCCCCCccEEEeeeccccCC
Q 012541 141 TCDSCGGTGAKS--S----NCIQSCKACWGRGGVL-----KTQRTPFGLIS-QVSTCSKCGGDGKIIIDHCRRCGG 204 (461)
Q Consensus 141 ~C~~C~GsG~~~--~----~~~~~C~~C~G~G~~~-----~~~~~~~g~~~-~~~~C~~C~G~G~~i~~~C~~C~G 204 (461)
.|..||+..... . .....|..|++.-... .....|+..+. -...|..|+-.-..-...|..|+-
T Consensus 15 ~C~~CH~~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~np~~~~~~g~v~C~~Ch~~~~~~~~~c~~ch~ 90 (572)
T 1d4d_A 15 GCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHS 90 (572)
T ss_dssp CSTTTSSSSSCCCSSTTCHHHHHHHHHHHCCHHHHHHHCC---CBTTBSSCCSCCCGGGTSCSSSCCCCGGGGTCC
T ss_pred ChhhhCCCCcCCCcccccccccchhhhhCCCHHHhhhhccccccCCchhhcCCCCCcccccccccCCCCccccccc
Confidence 699999986321 1 1346799999862111 11123443331 234899998654333446999976
No 68
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.35 E-value=85 Score=24.48 Aligned_cols=51 Identities=20% Similarity=0.457 Sum_probs=26.4
Q ss_pred eeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe------eeccccCC
Q 012541 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII------DHCRRCGG 204 (461)
Q Consensus 140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~------~~C~~C~G 204 (461)
..|+.|+..=... .....|..|+.. |.....|+.|+-.=.+.+ --|..|++
T Consensus 3 ~~CP~C~~~l~~~-~~~~~C~~C~~~-------------~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~ 59 (81)
T 2jrp_A 3 ITCPVCHHALERN-GDTAHCETCAKD-------------FSLQALCPDCRQPLQVLKACGAVDYFCQNGHG 59 (81)
T ss_dssp CCCSSSCSCCEEC-SSEEECTTTCCE-------------EEEEEECSSSCSCCCEEEETTEEEECCTTTTC
T ss_pred CCCCCCCCccccC-CCceECcccccc-------------CCCcccCcchhhHHHHHHhcCCcCeeeccCCC
Confidence 4677776542222 224457777642 222346777766543321 23666655
No 69
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.63 E-value=37 Score=33.19 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=29.3
Q ss_pred cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCc
Q 012541 156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 205 (461)
Q Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 205 (461)
...||.|++.=........+-..-...-.|+.|+-.=......|+.|+..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45677777665543221101000112367999988777777789999876
No 70
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.61 E-value=44 Score=24.50 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCChhhHHHHHHH-H--HHHhhccc-c-ccccccccc
Q 012541 6 PRCRRSRPLTESLLYHPDINKSPGAEEKFKEI-S--SAYEVLSD-D-EKRSVYDRF 56 (461)
Q Consensus 6 ~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI-~--eAYEVLsD-~-~KR~~YD~~ 56 (461)
+++..+||.+|-+...=| ++=.=++-.++| . --|-+|.| | ++++.|+.|
T Consensus 2 ~eEae~aF~~lL~~~~V~--s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVD--STWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp TTHHHHHHHHHHHHTTCC--SSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCC--CCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 568889999999887433 333456667778 3 36999997 5 466788876
No 71
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=21.33 E-value=1.2e+02 Score=25.49 Aligned_cols=43 Identities=16% Similarity=0.405 Sum_probs=31.3
Q ss_pred EEEeCCCCCCCCEEEEccCCCCCCCC--------CCCCccEEEEEEEEcCC
Q 012541 292 DLRIPSGVQPGDTVKLQQMGVPDINN--------PSVRGDHLFIVNVLIPK 334 (461)
Q Consensus 292 ~l~Ip~g~q~G~~~~l~g~G~P~~~~--------~~~rGDL~V~f~V~~P~ 334 (461)
...||.|.++|+.+.|.|.=.+..+. .....|+-++|++.|.+
T Consensus 9 ~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 9 KSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp EEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred EeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 46788899999999999974433221 11356999999999964
No 72
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.96 E-value=81 Score=23.81 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHH--HHhhccc-cccccccccc
Q 012541 3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISS--AYEVLSD-DEKRSVYDRF 56 (461)
Q Consensus 3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~e--AYEVLsD-~~KR~~YD~~ 56 (461)
.++.++.++||++|=..++ .++.-.=++-.+.|.. -|.+|.+ .++++.|+.|
T Consensus 11 ~~t~eea~~~F~~LL~e~~--V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey 65 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKR--VPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTT--CCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC--cCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHH
Confidence 4678999999999999986 4443111111223332 4888876 4666677766
No 73
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.83 E-value=72 Score=31.12 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=5.2
Q ss_pred eeeeccCCCC
Q 012541 138 CFETCDSCGG 147 (461)
Q Consensus 138 r~~~C~~C~G 147 (461)
....|+.|.+
T Consensus 181 ~~~~CPvCGs 190 (309)
T 2fiy_A 181 SRTLCPACGS 190 (309)
T ss_dssp TCSSCTTTCC
T ss_pred cCCCCCCCCC
Confidence 3445666644
Done!