BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012542
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 193/324 (59%), Gaps = 6/324 (1%)
Query: 141 YESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQK 199
Y+++F+ S FG GA ++N E YLK ++L+ +PN G ++ CNSW+++ K
Sbjct: 95 YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 200 RVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPE 259
R+FF N YLPS+TP L +YR EEL +RG+G GERK +DRIYDYDVYNDLGDPDK +
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 260 LARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYS 319
ARPVLGG PYPRR RTGR + D SEK Y+PRDEAF +K F A + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 320 VLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIED 377
V ++P L AF L F F+ + L+ GV LP T +P + +
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVTLPTNFLSNI--TPIPIIKELFRT 332
Query: 378 TGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP 437
G+ L + P+ M DK W DEEF+R+T+AGLNP I++I E+PL S LD + YG
Sbjct: 333 DGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDH 392
Query: 438 ESAITTELIEKEIGGMISVEEVYE 461
IT E +E +GG+ +VE+ +
Sbjct: 393 TCIITKEHLEPNLGGL-TVEQAIQ 415
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 237 bits (605), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 198/357 (55%), Gaps = 13/357 (3%)
Query: 111 AELDPKTGLDKST-IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYL 169
A+ + K L K+T ++ + G G ++ FE G G GA ++N E +L
Sbjct: 68 ADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFL 127
Query: 170 KDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTIL 228
+ L+ +PN G ++ CNSW+++ K R+FF N+ YLPS+TP L +YR EEL L
Sbjct: 128 VSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNL 187
Query: 229 RGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQ 287
RG+G GERK ++RIYDYDVYNDLGDPDK ARPVLGG PYPRR RTGR D
Sbjct: 188 RGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDP 247
Query: 288 FSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFP-----YF 342
SE R + Y+PRDEAF +K F + SV ++P L++AF DL F F
Sbjct: 248 NSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSF 304
Query: 343 SAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDE 402
+ L++ G+ LP + LP L + G+ L F P+ + K W DE
Sbjct: 305 DEVHGLYSGGIKLPTDIISKI--SPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDE 362
Query: 403 EFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEV 459
EF+R+ LAG+NP IR + ++P +S LD ++YG S IT E +E + G+ E +
Sbjct: 363 EFAREMLAGVNPNLIRCLKDFPPRSKLDSQVYGDHTSQITKEHLEPNLEGLTVDEAI 419
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 237 bits (605), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 198/357 (55%), Gaps = 13/357 (3%)
Query: 111 AELDPKTGLDKST-IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYL 169
A+ + K L K+T ++ + G G ++ FE G G GA ++N E +L
Sbjct: 68 ADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFL 127
Query: 170 KDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTIL 228
+ L+ +PN G ++ CNSW+++ K R+FF N+ YLPS+TP L +YR EEL L
Sbjct: 128 VSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNL 187
Query: 229 RGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQ 287
RG+G GERK ++RIYDYDVYNDLGDPDK ARPVLGG PYPRR RTGR D
Sbjct: 188 RGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDP 247
Query: 288 FSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFP-----YF 342
SE R + Y+PRDEAF +K F + SV ++P L++AF DL F F
Sbjct: 248 NSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSF 304
Query: 343 SAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDE 402
+ L++ G+ LP + LP L + G+ L F P+ + K W DE
Sbjct: 305 DEVHGLYSGGIKLPTDIISKI--SPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDE 362
Query: 403 EFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEV 459
EF+R+ LAG+NP IR + ++P +S LD ++YG S IT E +E + G+ E +
Sbjct: 363 EFAREMLAGVNPNLIRCLKDFPPRSKLDSQVYGDHTSQITKEHLEPNLEGLTVDEAI 419
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 135 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSK 193
G G + FE G GA ++N E +LK + L+ + N G + CNSW+++
Sbjct: 75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNT 134
Query: 194 HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGD 253
K R+FF N Y+PS+TP L YR EEL LRGNG GERK YDRIYDYDVYNDLG+
Sbjct: 135 KLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGN 194
Query: 254 PDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTF 312
PDK +LARPVLGG PYPRR RTGR TD +EK+ FYVPRDE +K
Sbjct: 195 PDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDA 254
Query: 313 SAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR 370
S+ + P+ E+AF + F F + L+ G+ LP +T++P
Sbjct: 255 LEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPL 310
Query: 371 -LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKST 428
++K + T G +IL F P + + W DEEF+R+ +AG+NP IR + E+P KS
Sbjct: 311 PVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSN 370
Query: 429 LDPEIYGPPESAITTELIE 447
LDP IYG S IT + ++
Sbjct: 371 LDPAIYGDQSSKITADSLD 389
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 183/322 (56%), Gaps = 15/322 (4%)
Query: 145 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFF 203
FE + FG GA ++N E +L + L+ +PN G + CNSW+++ K+ R+FF
Sbjct: 111 FEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFF 170
Query: 204 TNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARP 263
N YLPS TP L +YR EE +LRG+G G+RK +DRIYDYDVYNDLG+PD RP
Sbjct: 171 VNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGD--PRP 228
Query: 264 VLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLH 322
+LGG PYP R RTGR R TD SEK G YVPRDE F +K F + S+ H
Sbjct: 229 ILGGCSIYPYPLRVRTGRERTRTDPNSEK-PGEVYVPRDENFGHLKSSDFLTYGIKSLSH 287
Query: 323 ALVPSLETAFVDPDLG---FPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIED 377
++P ++A + F F + +L+ G+ LP L Q + LP L +
Sbjct: 288 DVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQ----ISPLPALKEIFRT 343
Query: 378 TGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP 437
G+N+L F P K DEEF+R+ +AG+NP IR + E+P KSTLDP +YG
Sbjct: 344 DGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQ 403
Query: 438 ESAITTELIEKEIGGMISVEEV 459
S IT E +E +GG ++VEE
Sbjct: 404 TSTITKEQLEINMGG-VTVEEA 424
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 167 MYLKDIVLDGLPNGPVNVTCNSWLHSKHDN---KQKRVFFTNKLY---LPSQTPDGLKRY 220
+Y+K I L+ +P W H DN KQ TN+L+ L +T +
Sbjct: 15 LYIKKICLEKVP---------EWNHFTEDNLRVKQILSGLTNQLFEVGLKEETANNYNSI 65
Query: 221 RAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK 268
R + R G+ + Y+ I +++VY + P+L GG+
Sbjct: 66 RTR--VLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTFNGGR 111
>pdb|2G9H|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
Length = 218
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 179 NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPD-GLKRYRAEELTILRGNGQGERK 237
N + N W++ KH TNK + +Q D L+RY EE I N G+ K
Sbjct: 90 NSARKIPINLWVNGKHKTISTDKISTNKKLVTAQEIDVKLRRYLQEEYNIYGHNSTGKGK 149
Query: 238 TY 239
Y
Sbjct: 150 EY 151
>pdb|3EA6|A Chain A, Atomic Resolution Of Crystal Structure Of Sek
Length = 219
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 174 LDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPD-GLKRYRAEELTILRGNG 232
LD N P+N+ W++ H TNK ++ +Q D L++Y EE I NG
Sbjct: 89 LDKSRNIPINI----WINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNG 144
Query: 233 QGERKTY 239
+ + Y
Sbjct: 145 TKKGEEY 151
>pdb|2NTS|A Chain A, Crystal Structure Of Sek-Hvb5.1
pdb|2NTT|A Chain A, Crystal Structure Of Sek
pdb|2NTT|B Chain B, Crystal Structure Of Sek
Length = 217
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 174 LDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPD-GLKRYRAEELTILRGNG 232
LD N P+N+ W++ H TNK ++ +Q D L++Y EE I NG
Sbjct: 89 LDKSRNIPINI----WINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNG 144
Query: 233 QGERKTY 239
+ + Y
Sbjct: 145 TKKGEEY 151
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 159 VENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTP 214
+ +E +KE Y K I D N P+ +W H++ + KQ+ +T+ LY+PSQ P
Sbjct: 241 ITDEEYKEFY-KHIAHD--FNDPL-----TWSHNRVEGKQE---YTSLLYIPSQAP 285
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 159 VENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTP 214
+ +E +KE Y K I D N P+ +W H++ + KQ+ +T+ LY+PSQ P
Sbjct: 241 ITDEEYKEFY-KHIAHDF--NDPL-----TWSHNRVEGKQE---YTSLLYIPSQAP 285
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 159 VENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTP 214
+ +E +KE Y K I D N P+ +W H++ + KQ+ +T+ LY+PSQ P
Sbjct: 13 ITDEEYKEFY-KHIAHDF--NDPL-----TWSHNRVEGKQE---YTSLLYIPSQAP 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,540,953
Number of Sequences: 62578
Number of extensions: 659529
Number of successful extensions: 1434
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1369
Number of HSP's gapped (non-prelim): 26
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)