BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012543
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 228/474 (48%), Gaps = 37/474 (7%)
Query: 17 LILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN------SPNPSNYPHFT---FCS 67
+++ P P QGHINP+ +LA +L+ +GF IT ++T++N S P + FT F S
Sbjct: 11 VVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFES 70
Query: 68 IQDGLSETEAS---TTDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDAS 124
I DGL+ E + D L + P+ + L +L P+ CL++D
Sbjct: 71 IPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRL---NHSTNVPPVTCLVSDCC 127
Query: 125 WFFTHDVAESLKXXXXXXXXXXXXXXXXXXXXXXXXQKGYFPIQDSHDLEAP-------- 176
FT AE + ++G P +D L
Sbjct: 128 MSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDW 187
Query: 177 VPELPPLRMKDIP--VIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHR 234
+P L R+KDI + T + + +F E +++ + + N+ ELE D +
Sbjct: 188 IPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSS 247
Query: 235 EFPIPSFPIGPFHKYYPASA---------SSLLSQDRICISRLDKQAPKSVIYVSFGSIA 285
P +PIGP + S+L +D C+ L+ + P SV+YV+FGS
Sbjct: 248 TIP-SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTT 306
Query: 286 AIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQ 345
+ + LE AWGLAN K FLW++RP LV G I F + RG I W PQ
Sbjct: 307 VMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEIADRGLIASWCPQD 364
Query: 346 EVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405
+VL HP+ G F THCGWNST ES+C GVPM+C P +Q R++ + W++G+ ++ +
Sbjct: 365 KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNV 424
Query: 406 ERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459
+R E+ + I V+ +G++M+ +A LK+K + T+ G SY +L +I +L
Sbjct: 425 KREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 166/353 (47%), Gaps = 23/353 (6%)
Query: 115 PIACLITDASWFFTHDVAESLKXXXXXXXXXXXXXXXXXXXXXXXXQK-GYFPIQDSHD- 172
P++CL+ DA +F D+A + +K G IQ D
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDE 171
Query: 173 LEAPVPELPPLRMKDIP------VIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQ 226
L +P + +R +D+ + +L+ LH+ + ++ NS +EL+
Sbjct: 172 LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMG----QVLPKATAVFINSFEELD- 226
Query: 227 DSLAKFHREFPIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAA 286
DSL + IGPF+ P ++ C+ L ++ P SV+Y+SFG++
Sbjct: 227 DSLTNDLKSKLKTYLNIGPFNLITPPP---VVPNTTGCLQWLKERKPTSVVYISFGTVTT 283
Query: 287 IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQE 346
+ + ++ L S+VPF+W +R + LP GFLE G G +V WAPQ E
Sbjct: 284 PPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMVVPWAPQAE 337
Query: 347 VLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL- 405
VLAH A GAF THCGWNS ES+ GVP+IC+P G+Q + R V DV ++G+ +E +
Sbjct: 338 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397
Query: 406 ERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458
+ + +++ +G+++R L+E D SS ++ L+ +
Sbjct: 398 TKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 139/262 (53%), Gaps = 21/262 (8%)
Query: 208 NQMKASSGCIWNSVQELEQDSLAKFHR---EFPIPSFPIGPFHKYYPASASSLLSQDRIC 264
+ K + G + N+ ELE +++ + P P +P+GP A +++ C
Sbjct: 202 KRYKEAEGILVNTFFELEPNAIKALQEPGLDKP-PVYPVGPLVNIGKQEAKQ--TEESEC 258
Query: 265 ISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVR-PGLVRGAEWIE- 322
+ LD Q SV+YVSFGS + + E+A GLA+S+ FLWV+R P + + + +
Sbjct: 259 LKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDS 318
Query: 323 --------LLPRGFLEMLDGRGHIVK-WAPQQEVLAHPATGAFWTHCGWNSTLESMCEGV 373
LP GFLE RG ++ WAPQ +VLAHP+TG F THCGWNSTLES+ G+
Sbjct: 319 HSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGI 378
Query: 374 PMICQPCHGEQMVIARYVSDVWKVGLHL----ERKLERGEVERAIRRVMVDAEGREMRNR 429
P+I P + EQ + A +S+ + L + + R EV R ++ +M EG+ +RN+
Sbjct: 379 PLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNK 438
Query: 430 AAILKEKLDLCTKQGSSSYQSL 451
LKE K +S ++L
Sbjct: 439 MKELKEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 200/471 (42%), Gaps = 37/471 (7%)
Query: 6 ESHMQQKKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNY----- 60
++ M + + PF H P+L L + ++ +T + N + +
Sbjct: 5 KNEMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNE 64
Query: 61 --PHFTFCSIQDGLSETEASTTDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIAC 118
P+ + ++ DGL + S+ + I L +K Q+ ++ A + + I C
Sbjct: 65 FLPNIKYYNVHDGLPKGYVSSGNPREPI-FLFIKA---MQENFKHVIDEAVAETGKNITC 120
Query: 119 LITDASWFFTHDVAESLKXXXXXXXXXXXXXXXXXXXXXXXXQK-GYFPIQDSHDLEAPV 177
L+TDA ++F D+AE + +K G + D ++ +
Sbjct: 121 LVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDV-L 179
Query: 178 PELPPLRMKDIPV-----IETLYQETLHQFAAEA--INQMKASSGCIWNSVQELEQDSLA 230
P P L+ D+P I+ + LH+ E N + +S + + E E +S
Sbjct: 180 PGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF 239
Query: 231 KFHREFPIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDET 290
K +GPF+ P +S + C+ LD+ SV+Y+SFGS+
Sbjct: 240 KL-------LLNVGPFNLTTPQRK---VSDEHGCLEWLDQHENSSVVYISFGSVVTPPPH 289
Query: 291 KFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAH 350
+ +A L PF+W R + E LP+GFLE +G IV WAPQ E+L H
Sbjct: 290 ELTALAESLEECGFPFIWSFR------GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKH 343
Query: 351 PATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERK-LERGE 409
+ G F TH GWNS LE + GVPMI +P G+Q + V ++G+ ++ L +
Sbjct: 344 SSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKES 403
Query: 410 VERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460
+++A+ M +G MR + LKE +Q +S LI + S
Sbjct: 404 IKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 131/263 (49%), Gaps = 22/263 (8%)
Query: 209 QMKASSGCIWNSVQELEQDSLAKF--HREFPIPSFPIGPFHKYYPASASSL-LSQDRICI 265
+ + + G I N+ +LEQ S+ H E P + +GP L +Q + +
Sbjct: 208 RFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLIL 267
Query: 266 SRLDKQAPKSVIYVSFGSIA-AIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELL 324
LD+Q KSV+++ FGS+ + ++ E+A GL +S V FLW + ++
Sbjct: 268 KWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVF 320
Query: 325 PRGFLEM--LDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHG 382
P GFLE L+G+G I WAPQ EVLAH A G F +HCGWNS LESM GVP++ P +
Sbjct: 321 PEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380
Query: 383 EQMVIARYVSDVWKVGLHLERKLERG-------EVERAIRRVMVDAEGREMRNRAAILKE 435
EQ + A + W VGL L +G E+E+ ++ +M + + + +KE
Sbjct: 381 EQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKE 438
Query: 436 KLDLCTKQGSSSYQSLENLISYI 458
G SS S+ LI I
Sbjct: 439 MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 131/263 (49%), Gaps = 22/263 (8%)
Query: 209 QMKASSGCIWNSVQELEQDSLAKF--HREFPIPSFPIGPFHKYYPASASSL-LSQDRICI 265
+ + + G I N+ +LEQ S+ H E P + +GP L +Q + +
Sbjct: 208 RFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLIL 267
Query: 266 SRLDKQAPKSVIYVSFGSIA-AIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELL 324
LD+Q KSV+++ FGS+ + ++ E+A GL +S V FLW + ++
Sbjct: 268 KWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVF 320
Query: 325 PRGFLEM--LDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHG 382
P GFLE L+G+G I WAPQ EVLAH A G F +HCGWNS LESM GVP++ P +
Sbjct: 321 PEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380
Query: 383 EQMVIARYVSDVWKVGLHLERKLERG-------EVERAIRRVMVDAEGREMRNRAAILKE 435
EQ + A + W VGL L +G E+E+ ++ +M + + + +KE
Sbjct: 381 EQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKE 438
Query: 436 KLDLCTKQGSSSYQSLENLISYI 458
G SS S+ LI I
Sbjct: 439 MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 338 IVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQ 384
+ KW PQ ++L HP T AF TH G N E++ G+P + P +Q
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 340 KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGL 399
+W PQ ++L AF TH G ST+E++ VPM+ P EQ + A + V L
Sbjct: 311 QWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI-----VEL 363
Query: 400 HLERKLERGEV--ERAIRRVMVDAEGREMRNRAAILKEKL 437
L R + R +V E+ V+ A + R A +++++
Sbjct: 364 GLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEI 403
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 340 KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGL 399
+W P VLAH A TH + LE+ GVP++ P + A V ++GL
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEA--APSAERVIELGL 342
Query: 400 H---LERKLERGEVERAIRRVMVDA 421
+LE + A+ R+ D+
Sbjct: 343 GSVLRPDQLEPASIREAVERLAADS 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,915,332
Number of Sequences: 62578
Number of extensions: 499215
Number of successful extensions: 1186
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 15
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)