Query 012543
Match_columns 461
No_of_seqs 126 out of 1279
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.2E-65 6.8E-70 500.9 46.7 443 13-461 6-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 8.6E-62 1.9E-66 478.2 43.9 437 13-460 6-469 (480)
3 PLN02173 UDP-glucosyl transfer 100.0 2.6E-61 5.6E-66 471.0 42.2 422 12-459 3-447 (449)
4 PLN02562 UDP-glycosyltransfera 100.0 3.3E-61 7.2E-66 474.0 43.0 428 13-459 5-448 (448)
5 PLN02670 transferase, transfer 100.0 4.5E-61 9.8E-66 471.4 41.4 436 9-461 1-466 (472)
6 PLN02448 UDP-glycosyltransfera 100.0 1.3E-60 2.9E-65 473.4 42.7 430 12-460 8-457 (459)
7 PLN02207 UDP-glycosyltransfera 100.0 3.5E-60 7.5E-65 464.7 44.1 438 14-460 3-465 (468)
8 PLN02210 UDP-glucosyl transfer 100.0 2E-60 4.4E-65 468.8 42.4 425 13-459 7-454 (456)
9 PLN02992 coniferyl-alcohol glu 100.0 3E-60 6.5E-65 465.9 43.3 429 14-460 5-469 (481)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.3E-60 5E-65 469.8 42.5 439 13-461 8-472 (477)
11 PLN03007 UDP-glucosyltransfera 100.0 1.8E-59 3.9E-64 467.6 43.7 436 13-461 4-481 (482)
12 PLN02554 UDP-glycosyltransfera 100.0 4E-59 8.7E-64 464.4 43.8 434 14-460 2-478 (481)
13 PLN00164 glucosyltransferase; 100.0 8.1E-59 1.8E-63 460.3 43.9 434 14-460 3-473 (480)
14 PLN02208 glycosyltransferase f 100.0 5.6E-59 1.2E-63 455.6 41.7 419 13-461 3-440 (442)
15 PLN02152 indole-3-acetate beta 100.0 8E-59 1.7E-63 454.2 42.0 425 14-458 3-454 (455)
16 PLN02764 glycosyltransferase f 100.0 7.6E-59 1.6E-63 452.0 41.3 419 13-461 4-446 (453)
17 PLN02534 UDP-glycosyltransfera 100.0 7E-59 1.5E-63 458.1 41.5 439 13-460 7-486 (491)
18 PLN03004 UDP-glycosyltransfera 100.0 7.3E-59 1.6E-63 454.0 40.2 424 14-449 3-450 (451)
19 PLN03015 UDP-glucosyl transfer 100.0 3.6E-58 7.8E-63 448.6 42.9 432 14-459 3-467 (470)
20 PLN00414 glycosyltransferase f 100.0 2.7E-58 5.8E-63 451.3 41.3 417 13-461 3-441 (446)
21 PLN02167 UDP-glycosyltransfera 100.0 8.3E-58 1.8E-62 454.3 43.0 442 13-460 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3E-50 6.4E-55 401.9 25.4 407 16-457 22-464 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 6E-52 1.3E-56 421.4 -9.0 380 16-440 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 3.4E-43 7.3E-48 346.2 29.5 380 21-459 2-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.5E-43 5.4E-48 348.8 25.4 374 15-455 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 9.1E-42 2E-46 332.0 17.4 391 14-459 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.6E-38 3.5E-43 323.0 25.5 393 15-439 6-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 5.6E-26 1.2E-30 218.6 29.6 319 16-432 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 5.6E-26 1.2E-30 217.7 22.4 305 15-417 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 4.3E-23 9.3E-28 196.1 26.1 310 15-420 1-324 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.9E-23 8.5E-28 197.6 20.4 309 16-427 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 9.5E-20 2.1E-24 177.5 27.8 344 15-460 2-357 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 3.4E-18 7.3E-23 166.2 26.8 313 16-420 1-324 (350)
34 TIGR01133 murG undecaprenyldip 99.8 8.1E-17 1.8E-21 156.3 26.4 312 15-428 1-326 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 2.3E-17 5E-22 161.2 20.5 351 15-457 6-385 (385)
36 COG4671 Predicted glycosyl tra 99.7 1.9E-15 4.2E-20 137.0 24.3 328 13-419 8-364 (400)
37 PRK00025 lpxB lipid-A-disaccha 99.7 5E-15 1.1E-19 145.6 22.3 348 15-459 2-376 (380)
38 PRK13609 diacylglycerol glucos 99.7 2.5E-15 5.5E-20 147.6 19.4 164 272-458 200-369 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 7.7E-15 1.7E-19 136.8 15.5 104 274-390 170-278 (279)
40 TIGR03492 conserved hypothetic 99.6 1.8E-12 3.9E-17 126.9 27.0 359 22-457 4-395 (396)
41 PRK13608 diacylglycerol glucos 99.6 5.3E-13 1.2E-17 131.2 22.3 165 272-459 200-370 (391)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 4E-16 8.6E-21 134.6 -2.0 135 276-420 1-144 (167)
43 PLN02605 monogalactosyldiacylg 99.5 1.2E-11 2.6E-16 121.5 25.0 176 264-459 196-380 (382)
44 cd03814 GT1_like_2 This family 99.4 5.5E-10 1.2E-14 108.5 32.2 159 274-458 196-363 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 8.6E-10 1.9E-14 111.3 32.0 155 274-456 262-429 (465)
46 cd04962 GT1_like_5 This family 99.3 2.3E-09 4.9E-14 104.9 29.6 113 334-461 253-371 (371)
47 cd03823 GT1_ExpE7_like This fa 99.3 2.9E-09 6.3E-14 103.1 28.4 130 273-420 189-329 (359)
48 PF03033 Glyco_transf_28: Glyc 99.3 2.6E-13 5.6E-18 113.3 -2.0 126 17-146 1-131 (139)
49 COG3980 spsG Spore coat polysa 99.3 3.3E-10 7.1E-15 100.3 17.1 145 274-433 158-303 (318)
50 cd03818 GT1_ExpC_like This fam 99.3 1.7E-08 3.7E-13 99.8 31.1 79 334-420 281-366 (396)
51 cd03816 GT1_ALG1_like This fam 99.3 9.4E-09 2E-13 102.1 29.2 90 335-434 295-399 (415)
52 cd03794 GT1_wbuB_like This fam 99.3 4.8E-09 1E-13 102.5 26.7 134 273-420 218-365 (394)
53 cd03817 GT1_UGDG_like This fam 99.2 1.8E-08 3.9E-13 98.0 30.1 94 333-435 258-359 (374)
54 PRK10307 putative glycosyl tra 99.2 3.5E-08 7.6E-13 98.1 32.1 166 274-460 228-407 (412)
55 cd03801 GT1_YqgM_like This fam 99.2 2.9E-08 6.3E-13 96.0 29.8 111 333-458 255-373 (374)
56 cd03800 GT1_Sucrose_synthase T 99.2 2.5E-08 5.4E-13 98.5 29.1 79 334-420 283-368 (398)
57 cd03808 GT1_cap1E_like This fa 99.2 2.4E-08 5.3E-13 96.3 27.2 315 16-421 1-330 (359)
58 PRK05749 3-deoxy-D-manno-octul 99.2 1.1E-08 2.3E-13 102.2 25.0 104 345-460 314-423 (425)
59 cd03825 GT1_wcfI_like This fam 99.2 6.8E-08 1.5E-12 94.1 29.2 115 333-461 243-365 (365)
60 PF04007 DUF354: Protein of un 99.1 6.4E-09 1.4E-13 98.2 19.6 300 15-418 1-308 (335)
61 cd03798 GT1_wlbH_like This fam 99.1 2.9E-07 6.4E-12 89.2 31.2 110 333-461 258-377 (377)
62 TIGR03449 mycothiol_MshA UDP-N 99.1 2.4E-07 5.3E-12 91.9 30.1 110 334-459 283-400 (405)
63 cd03820 GT1_amsD_like This fam 99.1 2.3E-07 5E-12 89.0 28.2 94 334-435 235-335 (348)
64 cd03796 GT1_PIG-A_like This fa 99.1 1.4E-07 3E-12 93.3 26.8 112 333-460 249-367 (398)
65 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 2.6E-09 5.7E-14 104.3 13.4 159 273-458 197-362 (363)
66 cd03795 GT1_like_4 This family 99.0 2.5E-07 5.3E-12 89.8 27.1 146 274-432 190-345 (357)
67 TIGR02468 sucrsPsyn_pln sucros 99.0 5.2E-07 1.1E-11 96.0 30.8 398 13-459 168-669 (1050)
68 cd03805 GT1_ALG2_like This fam 99.0 8E-07 1.7E-11 87.7 28.8 91 333-432 279-377 (392)
69 TIGR00236 wecB UDP-N-acetylglu 99.0 8.5E-09 1.8E-13 100.8 13.9 157 274-456 197-363 (365)
70 cd03821 GT1_Bme6_like This fam 99.0 1.3E-06 2.7E-11 84.9 29.3 78 333-420 261-345 (375)
71 cd05844 GT1_like_7 Glycosyltra 99.0 7.3E-07 1.6E-11 87.0 26.9 80 333-420 244-336 (367)
72 TIGR02472 sucr_P_syn_N sucrose 98.9 1.3E-06 2.9E-11 87.5 28.9 112 333-458 316-438 (439)
73 cd03822 GT1_ecORF704_like This 98.9 8.7E-07 1.9E-11 86.1 26.8 108 334-458 247-365 (366)
74 cd03819 GT1_WavL_like This fam 98.9 2E-06 4.4E-11 83.4 26.6 149 273-435 183-347 (355)
75 cd03802 GT1_AviGT4_like This f 98.9 1.8E-06 3.9E-11 83.1 25.4 155 276-458 172-334 (335)
76 cd04951 GT1_WbdM_like This fam 98.9 1.8E-06 3.9E-11 83.8 25.6 110 334-459 245-359 (360)
77 cd03811 GT1_WabH_like This fam 98.8 1E-06 2.2E-11 84.7 23.3 79 334-420 246-332 (353)
78 PRK14089 ipid-A-disaccharide s 98.8 3.1E-07 6.7E-12 87.7 19.1 159 274-456 167-346 (347)
79 PLN02275 transferase, transfer 98.8 4.8E-06 1E-10 81.5 27.1 74 335-418 287-371 (371)
80 cd03799 GT1_amsK_like This is 98.8 3.3E-06 7.2E-11 81.8 25.6 81 333-421 235-328 (355)
81 cd03807 GT1_WbnK_like This fam 98.8 7.2E-06 1.6E-10 79.2 28.0 109 334-458 251-364 (365)
82 cd04955 GT1_like_6 This family 98.8 9.2E-06 2E-10 79.0 28.1 155 278-458 196-362 (363)
83 PRK09922 UDP-D-galactose:(gluc 98.8 1.2E-06 2.7E-11 85.3 21.7 134 274-421 179-325 (359)
84 TIGR02149 glgA_Coryne glycogen 98.8 1.2E-05 2.6E-10 79.2 28.0 165 274-460 200-386 (388)
85 TIGR03088 stp2 sugar transfera 98.7 7.6E-06 1.6E-10 80.2 26.2 113 334-460 255-372 (374)
86 TIGR03087 stp1 sugar transfera 98.7 2.2E-06 4.7E-11 84.9 21.1 110 334-459 280-395 (397)
87 cd03809 GT1_mtfB_like This fam 98.6 2E-05 4.4E-10 76.4 24.7 78 333-420 252-336 (365)
88 PRK15427 colanic acid biosynth 98.6 4.1E-05 8.8E-10 75.8 26.8 115 333-461 278-406 (406)
89 TIGR02470 sucr_synth sucrose s 98.6 0.00017 3.7E-09 75.5 31.8 79 334-418 619-707 (784)
90 COG1519 KdtA 3-deoxy-D-manno-o 98.6 5.4E-05 1.2E-09 72.1 25.7 320 17-438 51-405 (419)
91 PLN02846 digalactosyldiacylgly 98.6 2.9E-05 6.2E-10 76.9 24.7 72 338-420 288-363 (462)
92 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 9.9E-07 2.2E-11 85.7 13.7 130 273-419 200-338 (365)
93 cd03812 GT1_CapH_like This fam 98.6 6.4E-05 1.4E-09 73.0 26.1 133 273-420 190-331 (358)
94 KOG3349 Predicted glycosyltran 98.5 2.2E-07 4.7E-12 74.4 6.4 116 274-398 3-129 (170)
95 cd03806 GT1_ALG11_like This fa 98.5 5.1E-05 1.1E-09 75.5 23.7 79 333-420 304-392 (419)
96 PF02684 LpxB: Lipid-A-disacch 98.5 3.5E-05 7.6E-10 74.1 21.5 193 236-450 151-367 (373)
97 PLN00142 sucrose synthase 98.5 6.4E-05 1.4E-09 78.7 24.6 62 351-420 667-736 (815)
98 TIGR02095 glgA glycogen/starch 98.5 6.1E-05 1.3E-09 76.3 23.7 167 274-461 290-473 (473)
99 PRK15179 Vi polysaccharide bio 98.4 0.0006 1.3E-08 71.3 30.4 113 333-459 573-692 (694)
100 PRK01021 lpxB lipid-A-disaccha 98.4 0.00014 3E-09 73.4 24.1 333 14-438 226-590 (608)
101 COG0763 LpxB Lipid A disacchar 98.4 5.1E-05 1.1E-09 71.5 19.6 348 15-459 2-380 (381)
102 cd03792 GT1_Trehalose_phosphor 98.4 0.00018 4E-09 70.4 24.8 111 334-461 252-372 (372)
103 cd03804 GT1_wbaZ_like This fam 98.4 3.5E-05 7.5E-10 74.8 19.5 125 277-421 197-327 (351)
104 PRK00654 glgA glycogen synthas 98.4 0.00025 5.4E-09 71.7 25.8 170 274-460 281-462 (466)
105 PLN02949 transferase, transfer 98.3 0.0016 3.6E-08 65.3 28.0 112 333-460 334-456 (463)
106 cd03791 GT1_Glycogen_synthase_ 98.2 0.00051 1.1E-08 69.7 24.2 168 274-459 295-475 (476)
107 PLN02316 synthase/transferase 98.2 0.0019 4.1E-08 69.7 28.7 118 334-459 900-1032(1036)
108 cd04950 GT1_like_1 Glycosyltra 98.2 0.002 4.4E-08 63.1 26.6 108 334-460 254-371 (373)
109 PF13844 Glyco_transf_41: Glyc 98.1 7.7E-05 1.7E-09 73.3 14.0 176 272-461 282-467 (468)
110 COG0381 WecB UDP-N-acetylgluco 98.0 0.00023 5E-09 67.3 15.9 158 273-456 203-370 (383)
111 cd03813 GT1_like_3 This family 98.0 0.0018 3.9E-08 65.6 23.7 112 333-457 353-473 (475)
112 TIGR02918 accessory Sec system 98.0 0.0018 3.8E-08 65.7 22.1 165 274-460 318-499 (500)
113 PRK15484 lipopolysaccharide 1, 98.0 0.00023 4.9E-09 70.0 15.0 114 333-460 256-377 (380)
114 PRK10125 putative glycosyl tra 97.9 0.013 2.9E-07 57.9 27.1 154 277-461 243-405 (405)
115 cd04949 GT1_gtfA_like This fam 97.8 0.00088 1.9E-08 65.5 16.9 101 333-438 260-364 (372)
116 PLN02501 digalactosyldiacylgly 97.8 0.0061 1.3E-07 62.6 22.5 74 336-420 603-681 (794)
117 cd04946 GT1_AmsK_like This fam 97.8 0.00048 1E-08 68.3 14.3 110 334-455 289-406 (407)
118 PF00534 Glycos_transf_1: Glyc 97.8 0.00019 4.1E-09 61.8 9.7 80 333-420 72-158 (172)
119 cd01635 Glycosyltransferase_GT 97.5 0.01 2.2E-07 53.0 17.5 49 334-384 161-217 (229)
120 COG5017 Uncharacterized conser 97.4 0.00087 1.9E-08 53.1 7.8 108 277-403 2-123 (161)
121 PRK15490 Vi polysaccharide bio 97.4 0.2 4.2E-06 50.9 27.7 112 333-458 454-573 (578)
122 PRK09814 beta-1,6-galactofuran 97.4 0.0009 2E-08 64.4 9.4 110 334-457 207-332 (333)
123 COG1817 Uncharacterized protei 97.4 0.035 7.5E-07 51.0 18.5 103 24-145 9-113 (346)
124 PRK10017 colanic acid biosynth 97.3 0.2 4.4E-06 49.6 30.0 163 265-438 225-408 (426)
125 PF02350 Epimerase_2: UDP-N-ac 97.3 0.00055 1.2E-08 66.0 6.9 140 272-432 178-327 (346)
126 TIGR02193 heptsyl_trn_I lipopo 97.2 0.013 2.8E-07 56.1 15.4 137 267-418 172-319 (319)
127 PF13692 Glyco_trans_1_4: Glyc 97.2 0.00086 1.9E-08 55.0 5.8 80 333-420 52-135 (135)
128 COG4370 Uncharacterized protei 96.7 0.46 9.9E-06 43.7 20.7 86 339-431 300-387 (412)
129 PF06722 DUF1205: Protein of u 96.6 0.0021 4.6E-08 49.0 3.6 64 262-328 28-96 (97)
130 PF13477 Glyco_trans_4_2: Glyc 96.6 0.028 6E-07 46.2 10.6 103 16-144 1-107 (139)
131 PRK14098 glycogen synthase; Pr 96.3 0.041 8.9E-07 55.9 11.9 169 274-460 306-485 (489)
132 PHA01633 putative glycosyl tra 96.1 0.025 5.5E-07 53.9 8.5 101 334-438 201-325 (335)
133 COG3914 Spy Predicted O-linked 96.1 0.18 3.9E-06 50.4 14.0 120 272-401 427-560 (620)
134 PHA01630 putative group 1 glyc 96.1 0.18 4E-06 48.3 14.1 114 340-461 196-331 (331)
135 KOG4626 O-linked N-acetylgluco 96.0 0.12 2.6E-06 51.9 12.6 137 272-420 756-904 (966)
136 TIGR02201 heptsyl_trn_III lipo 96.0 1.1 2.4E-05 43.2 19.4 105 16-141 1-108 (344)
137 cd03789 GT1_LPS_heptosyltransf 95.8 0.67 1.5E-05 43.2 16.5 102 16-141 1-105 (279)
138 PF13524 Glyco_trans_1_2: Glyc 95.7 0.068 1.5E-06 40.4 7.9 83 359-456 9-92 (92)
139 PF06258 Mito_fiss_Elm1: Mitoc 95.7 0.16 3.4E-06 48.1 11.6 40 342-382 220-259 (311)
140 PRK10916 ADP-heptose:LPS hepto 95.6 0.4 8.7E-06 46.4 14.7 103 15-141 1-106 (348)
141 PRK10422 lipopolysaccharide co 95.6 1.2 2.5E-05 43.2 17.9 108 12-141 3-113 (352)
142 TIGR02195 heptsyl_trn_II lipop 95.4 0.83 1.8E-05 43.9 15.9 102 16-141 1-105 (334)
143 COG3660 Predicted nucleoside-d 95.3 2 4.4E-05 38.7 16.1 73 295-378 189-271 (329)
144 COG0859 RfaF ADP-heptose:LPS h 95.2 0.94 2E-05 43.5 15.7 105 15-142 2-108 (334)
145 PF12000 Glyco_trans_4_3: Gkyc 95.1 0.26 5.7E-06 41.9 10.1 91 40-143 1-95 (171)
146 PF13579 Glyco_trans_4_4: Glyc 94.8 0.053 1.2E-06 45.3 5.2 96 30-144 6-104 (160)
147 PLN02939 transferase, transfer 94.8 0.21 4.6E-06 53.6 10.5 113 334-459 837-965 (977)
148 PRK10964 ADP-heptose:LPS hepto 94.8 0.84 1.8E-05 43.6 13.9 50 15-64 1-52 (322)
149 TIGR02400 trehalose_OtsA alpha 93.9 1.1 2.3E-05 45.2 12.8 104 340-460 342-456 (456)
150 PF01975 SurE: Survival protei 93.8 0.58 1.3E-05 41.0 9.5 113 15-145 1-134 (196)
151 PF08660 Alg14: Oligosaccharid 93.3 0.19 4.1E-06 43.0 5.5 111 20-145 3-130 (170)
152 PRK13932 stationary phase surv 93.2 2.5 5.4E-05 38.6 12.8 114 12-145 3-134 (257)
153 PF13439 Glyco_transf_4: Glyco 93.2 0.89 1.9E-05 38.4 9.8 30 23-52 10-39 (177)
154 PRK14099 glycogen synthase; Pr 92.4 2 4.3E-05 43.7 12.4 100 349-460 368-478 (485)
155 cd03788 GT1_TPS Trehalose-6-Ph 91.7 1.5 3.3E-05 44.2 10.6 102 340-458 347-459 (460)
156 COG1618 Predicted nucleotide k 90.7 0.48 1E-05 39.5 4.7 58 13-71 4-61 (179)
157 PLN03063 alpha,alpha-trehalose 88.1 6.5 0.00014 42.6 12.3 98 346-459 371-476 (797)
158 PRK13933 stationary phase surv 87.4 15 0.00033 33.5 12.5 23 31-54 16-38 (253)
159 PRK13934 stationary phase surv 87.4 14 0.00031 33.9 12.2 108 15-144 1-127 (266)
160 COG0438 RfaG Glycosyltransfera 87.2 15 0.00032 34.3 13.4 79 334-420 257-342 (381)
161 TIGR00087 surE 5'/3'-nucleotid 86.9 8.4 0.00018 35.1 10.5 96 30-145 15-129 (244)
162 KOG2941 Beta-1,4-mannosyltrans 86.7 30 0.00064 33.0 24.0 125 13-149 11-142 (444)
163 PF02310 B12-binding: B12 bind 86.3 4.4 9.5E-05 32.1 7.7 35 16-50 2-36 (121)
164 PRK02261 methylaspartate mutas 85.8 1.7 3.6E-05 35.7 5.0 39 13-51 2-40 (137)
165 PRK13935 stationary phase surv 85.4 23 0.0005 32.3 12.5 38 15-54 1-38 (253)
166 PRK02797 4-alpha-L-fucosyltran 84.5 10 0.00022 35.5 9.8 81 334-419 206-293 (322)
167 PF04464 Glyphos_transf: CDP-G 84.2 1.4 3E-05 43.0 4.5 110 334-455 252-368 (369)
168 PRK00346 surE 5'(3')-nucleotid 83.8 30 0.00066 31.6 12.5 94 30-145 15-125 (250)
169 TIGR00715 precor6x_red precorr 83.4 10 0.00022 34.8 9.5 32 15-51 1-32 (256)
170 TIGR00708 cobA cob(I)alamin ad 83.0 9.5 0.00021 32.6 8.5 98 14-126 5-108 (173)
171 TIGR03713 acc_sec_asp1 accesso 82.4 2.5 5.4E-05 43.2 5.6 91 334-437 409-506 (519)
172 PF02951 GSH-S_N: Prokaryotic 82.4 2.4 5.1E-05 33.7 4.3 37 15-51 1-40 (119)
173 PF05159 Capsule_synth: Capsul 81.7 5.5 0.00012 36.9 7.3 41 337-380 186-226 (269)
174 PRK05986 cob(I)alamin adenolsy 81.6 22 0.00047 31.0 10.2 99 14-126 22-126 (191)
175 TIGR02919 accessory Sec system 81.4 31 0.00068 34.5 12.8 138 273-437 282-426 (438)
176 cd03793 GT1_Glycogen_synthase_ 80.9 3.6 7.8E-05 42.1 6.0 75 343-420 467-552 (590)
177 cd00561 CobA_CobO_BtuR ATP:cor 80.7 22 0.00048 29.9 9.8 56 16-71 4-65 (159)
178 COG1703 ArgK Putative periplas 79.9 20 0.00044 33.4 9.9 42 12-53 49-90 (323)
179 PF07429 Glyco_transf_56: 4-al 79.8 30 0.00066 33.0 11.2 81 334-419 245-332 (360)
180 PF02441 Flavoprotein: Flavopr 79.8 3.2 7E-05 33.6 4.4 38 15-53 1-38 (129)
181 PRK14501 putative bifunctional 79.7 16 0.00034 39.4 10.8 110 338-460 346-462 (726)
182 cd02067 B12-binding B12 bindin 78.6 3.3 7.2E-05 32.9 4.1 36 16-51 1-36 (119)
183 KOG0853 Glycosyltransferase [C 78.5 17 0.00036 36.6 9.6 59 364-430 381-440 (495)
184 COG2894 MinD Septum formation 78.2 11 0.00023 33.5 7.1 41 16-56 3-45 (272)
185 PF12146 Hydrolase_4: Putative 78.1 5.9 0.00013 28.9 5.0 37 14-50 15-51 (79)
186 PF10649 DUF2478: Protein of u 77.6 42 0.00091 28.2 10.6 111 19-145 3-132 (159)
187 COG0003 ArsA Predicted ATPase 77.3 17 0.00037 34.5 9.0 37 16-52 3-40 (322)
188 PF04127 DFP: DNA / pantothena 76.9 2.1 4.6E-05 37.1 2.7 52 14-68 3-66 (185)
189 PRK08305 spoVFB dipicolinate s 74.5 4.7 0.0001 35.2 4.1 39 13-51 4-42 (196)
190 COG0496 SurE Predicted acid ph 73.6 36 0.00078 31.0 9.6 96 29-145 14-126 (252)
191 PF06792 UPF0261: Uncharacteri 71.3 98 0.0021 30.4 12.5 95 273-383 184-281 (403)
192 cd01980 Chlide_reductase_Y Chl 70.2 47 0.001 33.0 10.7 28 114-144 349-376 (416)
193 TIGR02015 BchY chlorophyllide 70.1 61 0.0013 32.3 11.4 95 15-143 286-380 (422)
194 COG2185 Sbm Methylmalonyl-CoA 70.0 7.9 0.00017 31.7 4.2 39 12-50 10-48 (143)
195 PF06564 YhjQ: YhjQ protein; 69.5 52 0.0011 29.9 9.8 35 16-50 3-38 (243)
196 PF00731 AIRC: AIR carboxylase 69.3 66 0.0014 26.8 10.3 136 276-439 2-148 (150)
197 PRK13931 stationary phase surv 68.6 73 0.0016 29.3 10.7 94 31-144 16-129 (261)
198 PRK13982 bifunctional SbtC-lik 68.6 11 0.00023 38.0 5.6 53 13-68 255-319 (475)
199 PRK09620 hypothetical protein; 65.5 15 0.00033 33.1 5.6 38 14-51 3-52 (229)
200 cd02037 MRP-like MRP (Multiple 65.0 28 0.0006 29.5 7.0 32 20-51 6-37 (169)
201 KOG1111 N-acetylglucosaminyltr 64.4 1.4E+02 0.003 28.8 15.6 83 288-378 209-301 (426)
202 PF01075 Glyco_transf_9: Glyco 64.2 13 0.00029 33.6 5.2 98 273-378 104-208 (247)
203 TIGR02852 spore_dpaB dipicolin 64.1 9.4 0.0002 33.1 3.8 37 15-51 1-37 (187)
204 PF02606 LpxK: Tetraacyldisacc 63.7 23 0.00049 33.9 6.7 35 20-54 43-77 (326)
205 TIGR02370 pyl_corrinoid methyl 63.5 15 0.00032 32.3 5.0 39 13-51 83-121 (197)
206 cd02070 corrinoid_protein_B12- 62.8 15 0.00032 32.3 5.0 39 13-51 81-119 (201)
207 cd01974 Nitrogenase_MoFe_beta 62.4 60 0.0013 32.5 9.8 27 114-143 376-402 (435)
208 TIGR01285 nifN nitrogenase mol 60.8 53 0.0011 32.8 9.0 88 14-143 311-398 (432)
209 PRK05920 aromatic acid decarbo 60.7 13 0.00029 32.7 4.2 38 14-52 3-40 (204)
210 cd07039 TPP_PYR_POX Pyrimidine 60.4 91 0.002 26.3 9.2 27 354-380 65-97 (164)
211 PRK12475 thiamine/molybdopteri 60.1 79 0.0017 30.4 9.7 33 13-50 23-56 (338)
212 PRK06732 phosphopantothenate-- 59.9 9.4 0.0002 34.4 3.2 20 32-51 30-49 (229)
213 cd02071 MM_CoA_mut_B12_BD meth 59.7 16 0.00034 29.2 4.2 36 16-51 1-36 (122)
214 PRK01175 phosphoribosylformylg 59.6 1.1E+02 0.0023 28.2 10.1 57 14-73 3-59 (261)
215 COG4394 Uncharacterized protei 59.6 1.2E+02 0.0027 28.1 10.0 37 337-376 241-280 (370)
216 PRK05632 phosphate acetyltrans 58.2 1.4E+02 0.0031 31.9 12.1 102 16-146 4-116 (684)
217 COG2910 Putative NADH-flavin r 58.2 13 0.00028 32.0 3.5 33 15-51 1-33 (211)
218 COG1663 LpxK Tetraacyldisaccha 58.0 39 0.00085 32.1 7.0 35 20-54 55-89 (336)
219 cd01965 Nitrogenase_MoFe_beta_ 57.2 39 0.00084 33.8 7.4 27 114-143 370-396 (428)
220 COG1484 DnaC DNA replication p 57.1 17 0.00037 33.4 4.5 38 14-51 105-142 (254)
221 COG1435 Tdk Thymidine kinase [ 56.3 1.4E+02 0.003 26.1 10.8 38 16-53 5-43 (201)
222 PRK10867 signal recognition pa 56.2 66 0.0014 32.1 8.6 39 14-52 100-139 (433)
223 PLN02470 acetolactate synthase 55.6 30 0.00065 36.2 6.6 93 280-380 2-110 (585)
224 cd02069 methionine_synthase_B1 55.0 25 0.00054 31.3 5.0 39 13-51 87-125 (213)
225 TIGR00682 lpxK tetraacyldisacc 54.6 46 0.001 31.6 7.0 35 20-54 36-70 (311)
226 TIGR01425 SRP54_euk signal rec 54.4 60 0.0013 32.3 8.0 39 14-52 100-138 (429)
227 PRK07313 phosphopantothenoylcy 53.1 19 0.00041 31.2 3.8 38 15-53 2-39 (182)
228 PRK04885 ppnK inorganic polyph 52.6 17 0.00036 33.6 3.7 53 350-420 35-93 (265)
229 COG1797 CobB Cobyrinic acid a, 52.6 24 0.00052 34.7 4.7 32 16-47 2-34 (451)
230 COG0052 RpsB Ribosomal protein 52.5 14 0.0003 33.3 2.9 30 116-145 157-188 (252)
231 COG2109 BtuR ATP:corrinoid ade 52.1 98 0.0021 26.9 7.8 99 14-126 28-133 (198)
232 PRK02155 ppnK NAD(+)/NADH kina 51.9 21 0.00046 33.4 4.3 54 349-420 62-119 (291)
233 PRK14098 glycogen synthase; Pr 51.8 26 0.00056 35.7 5.2 41 12-52 3-49 (489)
234 TIGR01501 MthylAspMutase methy 51.8 28 0.0006 28.4 4.4 37 15-51 2-38 (134)
235 PF06506 PrpR_N: Propionate ca 51.6 11 0.00024 32.3 2.2 69 349-420 33-124 (176)
236 PRK05595 replicative DNA helic 51.2 29 0.00063 34.8 5.4 38 16-53 203-241 (444)
237 PRK06321 replicative DNA helic 51.1 56 0.0012 33.1 7.4 38 16-53 228-266 (472)
238 PRK14099 glycogen synthase; Pr 50.8 27 0.00059 35.5 5.2 40 13-52 2-47 (485)
239 COG2861 Uncharacterized protei 50.6 1.1E+02 0.0025 27.5 8.2 27 115-141 149-178 (250)
240 PRK04296 thymidine kinase; Pro 50.4 83 0.0018 27.3 7.6 35 16-50 3-38 (190)
241 PRK04940 hypothetical protein; 50.2 38 0.00082 29.2 5.2 31 115-145 60-91 (180)
242 PF02702 KdpD: Osmosensitive K 50.1 25 0.00054 30.8 4.0 39 13-51 4-42 (211)
243 PRK14077 pnk inorganic polypho 49.9 21 0.00046 33.3 3.9 56 347-420 61-120 (287)
244 PRK01911 ppnK inorganic polyph 49.4 23 0.00049 33.3 4.1 57 346-420 60-120 (292)
245 PF05693 Glycogen_syn: Glycoge 49.1 26 0.00055 36.2 4.5 92 342-437 461-566 (633)
246 PRK06849 hypothetical protein; 49.1 32 0.00069 33.8 5.3 35 13-51 3-37 (389)
247 PRK13768 GTPase; Provisional 49.0 49 0.0011 30.3 6.2 36 16-51 4-39 (253)
248 KOG1387 Glycosyltransferase [C 48.9 2.5E+02 0.0055 27.0 20.3 279 100-438 142-444 (465)
249 cd01141 TroA_d Periplasmic bin 48.9 27 0.00059 30.0 4.3 37 100-143 61-99 (186)
250 PRK08760 replicative DNA helic 48.6 44 0.00096 33.9 6.2 38 16-53 231-269 (476)
251 PF02374 ArsA_ATPase: Anion-tr 48.1 27 0.00059 33.0 4.4 38 16-53 3-40 (305)
252 PF01210 NAD_Gly3P_dh_N: NAD-d 47.9 15 0.00031 30.9 2.3 31 16-51 1-31 (157)
253 PF07991 IlvN: Acetohydroxy ac 47.7 18 0.00038 30.5 2.7 52 13-69 3-55 (165)
254 TIGR00959 ffh signal recogniti 47.4 90 0.0019 31.1 8.0 39 14-52 99-138 (428)
255 PRK06029 3-octaprenyl-4-hydrox 47.2 28 0.0006 30.2 3.9 36 16-52 3-39 (185)
256 PRK02649 ppnK inorganic polyph 47.1 25 0.00054 33.3 3.9 54 347-420 65-124 (305)
257 PF06925 MGDG_synth: Monogalac 46.9 56 0.0012 27.7 5.8 22 27-48 1-23 (169)
258 PRK11914 diacylglycerol kinase 46.6 52 0.0011 31.1 6.2 81 276-380 12-96 (306)
259 PRK03378 ppnK inorganic polyph 46.6 26 0.00056 32.9 3.9 56 347-420 60-119 (292)
260 KOG3339 Predicted glycosyltran 46.3 1.1E+02 0.0025 26.3 7.2 26 15-41 39-64 (211)
261 PRK01077 cobyrinic acid a,c-di 46.1 97 0.0021 31.2 8.3 35 16-50 5-40 (451)
262 cd01968 Nitrogenase_NifE_I Nit 46.1 2.6E+02 0.0055 27.7 11.2 26 114-142 355-380 (410)
263 PRK01231 ppnK inorganic polyph 46.0 70 0.0015 30.1 6.8 54 349-420 61-118 (295)
264 PRK06904 replicative DNA helic 45.7 72 0.0016 32.3 7.2 38 16-53 223-261 (472)
265 TIGR01283 nifE nitrogenase mol 45.6 2.1E+02 0.0046 28.8 10.6 26 114-142 394-419 (456)
266 COG2205 KdpD Osmosensitive K+ 44.8 24 0.00051 37.6 3.6 40 12-51 20-59 (890)
267 COG0541 Ffh Signal recognition 44.7 1E+02 0.0023 30.5 7.7 42 13-54 99-140 (451)
268 TIGR02398 gluc_glyc_Psyn gluco 44.4 3.6E+02 0.0078 27.5 13.6 106 337-459 365-481 (487)
269 COG0297 GlgA Glycogen synthase 44.3 3.6E+02 0.0079 27.4 12.5 170 274-460 293-477 (487)
270 PRK04539 ppnK inorganic polyph 44.3 26 0.00057 32.9 3.6 57 346-420 64-124 (296)
271 cd03114 ArgK-like The function 44.2 1.7E+02 0.0038 24.1 8.3 35 17-51 2-36 (148)
272 PRK12446 undecaprenyldiphospho 44.1 48 0.001 32.1 5.5 97 274-378 2-120 (352)
273 PRK13604 luxD acyl transferase 44.0 48 0.001 31.3 5.3 37 13-49 35-71 (307)
274 cd03466 Nitrogenase_NifN_2 Nit 44.0 3.4E+02 0.0074 27.1 12.2 27 114-143 371-397 (429)
275 TIGR02113 coaC_strep phosphopa 43.9 32 0.00069 29.6 3.8 36 16-52 2-37 (177)
276 PLN02939 transferase, transfer 43.9 46 0.001 36.6 5.7 42 12-53 479-526 (977)
277 cd07038 TPP_PYR_PDC_IPDC_like 43.5 65 0.0014 27.1 5.7 28 353-380 60-93 (162)
278 PF03701 UPF0181: Uncharacteri 43.5 63 0.0014 21.1 4.0 30 427-460 14-43 (51)
279 PRK09165 replicative DNA helic 43.4 60 0.0013 33.1 6.4 37 17-53 220-271 (497)
280 COG0059 IlvC Ketol-acid reduct 43.4 16 0.00036 34.0 2.0 54 13-71 17-71 (338)
281 KOG0780 Signal recognition par 43.2 1E+02 0.0023 30.0 7.2 39 13-51 100-138 (483)
282 TIGR00640 acid_CoA_mut_C methy 43.1 50 0.0011 26.8 4.6 38 13-50 1-38 (132)
283 PF01695 IstB_IS21: IstB-like 43.1 48 0.001 28.5 4.8 39 13-51 46-84 (178)
284 cd06559 Endonuclease_V Endonuc 43.0 28 0.0006 30.8 3.4 31 114-144 92-129 (208)
285 PF09314 DUF1972: Domain of un 42.8 49 0.0011 28.6 4.8 54 16-69 3-62 (185)
286 PF07905 PucR: Purine cataboli 42.5 1.5E+02 0.0033 23.5 7.4 55 264-328 36-91 (123)
287 TIGR00421 ubiX_pad polyprenyl 42.3 28 0.00061 30.0 3.3 36 16-52 1-36 (181)
288 PRK13057 putative lipid kinase 42.3 57 0.0012 30.5 5.6 31 348-380 48-82 (287)
289 TIGR01162 purE phosphoribosyla 42.3 2.1E+02 0.0045 24.0 8.5 17 424-440 131-147 (156)
290 PRK07313 phosphopantothenoylcy 41.9 2.3E+02 0.0049 24.4 9.7 48 371-419 112-179 (182)
291 PF02572 CobA_CobO_BtuR: ATP:c 41.8 1E+02 0.0022 26.4 6.5 98 15-126 4-107 (172)
292 PRK14478 nitrogenase molybdenu 41.7 2.1E+02 0.0045 29.1 9.9 25 114-141 392-416 (475)
293 PRK06718 precorrin-2 dehydroge 41.7 2.1E+02 0.0046 25.1 8.8 143 273-441 10-166 (202)
294 PRK11519 tyrosine kinase; Prov 41.5 4.7E+02 0.01 28.2 13.0 38 14-51 525-564 (719)
295 PF07015 VirC1: VirC1 protein; 41.3 75 0.0016 28.6 5.8 41 16-56 3-44 (231)
296 COG1327 Predicted transcriptio 41.0 41 0.00089 27.7 3.7 57 360-418 35-92 (156)
297 COG0041 PurE Phosphoribosylcar 40.5 2.2E+02 0.0047 23.8 9.6 139 276-442 4-153 (162)
298 PRK03372 ppnK inorganic polyph 40.4 32 0.00069 32.5 3.6 56 347-420 69-128 (306)
299 PRK04148 hypothetical protein; 40.2 59 0.0013 26.5 4.5 33 13-51 16-48 (134)
300 PF09001 DUF1890: Domain of un 40.0 31 0.00068 27.9 2.9 28 24-51 9-36 (139)
301 PLN02929 NADH kinase 39.8 26 0.00057 32.9 2.8 66 349-420 63-137 (301)
302 PRK02231 ppnK inorganic polyph 39.8 25 0.00054 32.6 2.7 57 345-419 37-97 (272)
303 TIGR00147 lipid kinase, YegS/R 39.6 88 0.0019 29.2 6.5 29 350-380 57-91 (293)
304 COG0503 Apt Adenine/guanine ph 39.6 63 0.0014 27.8 5.0 30 114-143 52-83 (179)
305 cd01421 IMPCH Inosine monophos 39.4 39 0.00085 29.2 3.6 85 29-124 11-100 (187)
306 TIGR00347 bioD dethiobiotin sy 39.3 1.1E+02 0.0024 25.5 6.6 28 21-48 5-32 (166)
307 PRK06249 2-dehydropantoate 2-r 39.1 42 0.00091 31.8 4.3 33 14-51 5-37 (313)
308 PRK05114 hypothetical protein; 38.9 79 0.0017 21.3 4.1 29 427-459 14-42 (59)
309 PRK13789 phosphoribosylamine-- 38.6 1.2E+02 0.0027 30.2 7.6 34 13-51 3-36 (426)
310 cd07035 TPP_PYR_POX_like Pyrim 38.4 1.6E+02 0.0034 24.3 7.2 26 355-380 62-93 (155)
311 TIGR00379 cobB cobyrinic acid 37.8 2E+02 0.0043 29.0 8.9 34 17-50 2-36 (449)
312 COG0299 PurN Folate-dependent 37.7 2.8E+02 0.0061 24.3 8.4 133 275-435 52-186 (200)
313 PF08766 DEK_C: DEK C terminal 37.6 1.2E+02 0.0025 20.1 5.0 49 406-457 1-51 (54)
314 COG0205 PfkA 6-phosphofructoki 37.5 1.1E+02 0.0025 29.4 6.8 38 14-51 2-41 (347)
315 PRK06719 precorrin-2 dehydroge 37.3 51 0.0011 27.7 4.0 34 13-51 12-45 (157)
316 PRK07688 thiamine/molybdopteri 37.2 2.4E+02 0.0052 27.1 9.1 34 13-51 23-57 (339)
317 PRK01185 ppnK inorganic polyph 37.1 43 0.00093 31.0 3.8 53 350-420 52-105 (271)
318 PF07355 GRDB: Glycine/sarcosi 36.7 62 0.0013 31.0 4.7 28 114-141 79-116 (349)
319 PRK07773 replicative DNA helic 36.3 95 0.0021 34.4 6.9 38 16-53 219-257 (886)
320 PRK02645 ppnK inorganic polyph 36.2 76 0.0016 30.0 5.4 29 350-380 57-89 (305)
321 PF05728 UPF0227: Uncharacteri 36.2 80 0.0017 27.4 5.1 29 117-145 61-90 (187)
322 PRK05636 replicative DNA helic 36.1 62 0.0013 33.1 5.1 37 17-53 268-305 (505)
323 cd02034 CooC The accessory pro 35.9 88 0.0019 24.7 4.9 37 16-52 1-37 (116)
324 PF04244 DPRP: Deoxyribodipyri 35.9 36 0.00078 30.5 3.0 25 27-51 47-71 (224)
325 PLN02948 phosphoribosylaminoim 35.8 2.9E+02 0.0062 28.9 9.9 35 13-52 21-55 (577)
326 PRK04946 hypothetical protein; 35.6 35 0.00076 29.4 2.8 56 292-365 112-168 (181)
327 PRK00784 cobyric acid synthase 35.5 3E+02 0.0065 28.0 10.0 35 16-50 4-39 (488)
328 PF08323 Glyco_transf_5: Starc 35.5 31 0.00067 31.4 2.6 27 26-52 17-43 (245)
329 PLN02935 Bifunctional NADH kin 35.5 45 0.00098 33.7 3.9 53 349-420 261-318 (508)
330 PRK03708 ppnK inorganic polyph 35.4 40 0.00087 31.4 3.3 53 350-420 57-112 (277)
331 PRK07206 hypothetical protein; 35.3 1.7E+02 0.0037 28.9 8.1 31 16-51 4-34 (416)
332 TIGR02700 flavo_MJ0208 archaeo 35.3 56 0.0012 29.5 4.2 36 17-52 2-39 (234)
333 PF01497 Peripla_BP_2: Peripla 35.2 54 0.0012 29.2 4.2 40 100-146 52-93 (238)
334 PF01372 Melittin: Melittin; 35.0 9.5 0.00021 20.5 -0.5 17 361-377 1-17 (26)
335 TIGR00521 coaBC_dfp phosphopan 34.9 47 0.001 32.6 3.9 38 14-52 3-40 (390)
336 PRK10037 cell division protein 34.7 65 0.0014 29.3 4.6 36 16-51 3-39 (250)
337 PRK06522 2-dehydropantoate 2-r 34.7 48 0.001 31.1 3.9 31 15-50 1-31 (304)
338 COG4088 Predicted nucleotide k 34.3 52 0.0011 29.1 3.5 36 16-51 3-38 (261)
339 PRK13055 putative lipid kinase 34.2 1E+02 0.0023 29.5 6.2 29 350-380 59-93 (334)
340 cd01147 HemV-2 Metal binding p 34.1 62 0.0013 29.5 4.5 39 100-145 66-107 (262)
341 PRK09219 xanthine phosphoribos 34.1 84 0.0018 27.3 4.9 31 114-144 49-81 (189)
342 PRK13054 lipid kinase; Reviewe 33.9 1.5E+02 0.0032 27.9 7.0 30 349-380 55-92 (300)
343 PRK08462 biotin carboxylase; V 33.8 3.3E+02 0.0072 27.2 9.9 31 16-51 6-36 (445)
344 PRK05579 bifunctional phosphop 33.6 4.1E+02 0.0089 26.3 10.2 136 273-419 6-182 (399)
345 CHL00072 chlL photochlorophyll 33.6 77 0.0017 29.7 5.0 37 15-51 1-37 (290)
346 PRK13337 putative lipid kinase 33.5 1.2E+02 0.0025 28.6 6.3 28 351-380 58-91 (304)
347 cd01143 YvrC Periplasmic bindi 33.3 72 0.0016 27.4 4.5 38 100-144 52-90 (195)
348 cd01425 RPS2 Ribosomal protein 33.3 57 0.0012 28.5 3.8 32 114-145 126-159 (193)
349 PRK13695 putative NTPase; Prov 32.8 2.3E+02 0.0051 23.8 7.6 32 15-46 1-32 (174)
350 COG2210 Peroxiredoxin family p 32.8 88 0.0019 25.5 4.4 33 18-50 7-39 (137)
351 PF02776 TPP_enzyme_N: Thiamin 32.7 1.4E+02 0.0031 25.2 6.2 27 355-381 67-99 (172)
352 PF06180 CbiK: Cobalt chelatas 32.7 73 0.0016 29.3 4.5 40 274-313 1-43 (262)
353 PRK05579 bifunctional phosphop 32.7 61 0.0013 32.0 4.3 39 14-53 6-44 (399)
354 PRK13059 putative lipid kinase 32.7 1.2E+02 0.0025 28.6 6.1 29 350-380 56-90 (295)
355 PRK06835 DNA replication prote 32.6 84 0.0018 30.1 5.1 37 15-51 184-220 (329)
356 COG0801 FolK 7,8-dihydro-6-hyd 32.6 92 0.002 26.2 4.7 29 276-304 3-31 (160)
357 cd02032 Bchl_like This family 32.5 74 0.0016 29.2 4.7 37 15-51 1-37 (267)
358 KOG3062 RNA polymerase II elon 32.5 95 0.0021 27.8 4.9 35 16-50 3-38 (281)
359 PRK14075 pnk inorganic polypho 32.3 58 0.0013 29.9 3.8 53 350-420 41-94 (256)
360 cd02065 B12-binding_like B12 b 32.1 78 0.0017 24.9 4.2 34 17-50 2-35 (125)
361 PF03853 YjeF_N: YjeF-related 32.0 91 0.002 26.5 4.8 37 13-50 24-60 (169)
362 PRK03501 ppnK inorganic polyph 31.9 52 0.0011 30.4 3.4 54 350-420 39-97 (264)
363 PF12695 Abhydrolase_5: Alpha/ 31.7 87 0.0019 25.0 4.6 33 18-50 2-34 (145)
364 PF15092 UPF0728: Uncharacteri 31.3 98 0.0021 22.9 4.0 38 14-51 6-47 (88)
365 COG0504 PyrG CTP synthase (UTP 30.9 93 0.002 31.2 5.0 36 16-51 2-40 (533)
366 TIGR02699 archaeo_AfpA archaeo 30.9 70 0.0015 27.4 3.8 28 26-53 10-39 (174)
367 COG4566 TtrR Response regulato 30.9 2.4E+02 0.0051 24.6 6.8 50 369-420 73-122 (202)
368 TIGR01281 DPOR_bchL light-inde 30.7 84 0.0018 28.9 4.7 37 15-51 1-37 (268)
369 COG2085 Predicted dinucleotide 30.6 78 0.0017 28.0 4.1 31 16-51 3-33 (211)
370 PRK02399 hypothetical protein; 30.5 2.6E+02 0.0055 27.6 7.9 91 273-380 185-279 (406)
371 KOG1250 Threonine/serine dehyd 30.4 5.4E+02 0.012 25.4 11.8 55 361-420 252-316 (457)
372 PF10093 DUF2331: Uncharacteri 30.3 5.3E+02 0.011 25.2 10.4 166 282-460 187-374 (374)
373 PRK14477 bifunctional nitrogen 30.3 4.7E+02 0.01 29.2 10.9 33 13-50 319-351 (917)
374 TIGR02114 coaB_strep phosphopa 29.8 48 0.001 29.8 2.8 30 19-50 18-47 (227)
375 COG0569 TrkA K+ transport syst 29.7 67 0.0014 28.8 3.7 32 15-51 1-32 (225)
376 PRK04328 hypothetical protein; 29.6 4.3E+02 0.0093 24.0 9.7 37 15-51 24-60 (249)
377 PRK12311 rpsB 30S ribosomal pr 29.5 83 0.0018 30.0 4.4 32 114-145 151-184 (326)
378 TIGR01007 eps_fam capsular exo 29.4 1.2E+02 0.0027 26.3 5.4 36 16-51 19-55 (204)
379 PF04413 Glycos_transf_N: 3-De 29.3 52 0.0011 28.5 2.9 97 16-143 22-125 (186)
380 TIGR00064 ftsY signal recognit 29.3 1.2E+02 0.0026 28.1 5.4 39 13-51 71-109 (272)
381 COG2874 FlaH Predicted ATPases 29.1 27 0.00058 30.9 1.0 37 17-53 31-67 (235)
382 TIGR02329 propionate_PrpR prop 28.9 2.1E+02 0.0045 29.5 7.5 110 25-145 36-172 (526)
383 PRK08181 transposase; Validate 28.7 1E+02 0.0022 28.6 4.8 37 14-50 106-142 (269)
384 PF03720 UDPG_MGDP_dh_C: UDP-g 28.7 69 0.0015 24.7 3.2 28 23-50 9-38 (106)
385 TIGR02655 circ_KaiC circadian 28.6 4.7E+02 0.01 26.6 10.0 37 16-52 265-301 (484)
386 PF02826 2-Hacid_dh_C: D-isome 28.6 1.2E+02 0.0025 26.0 5.0 103 272-415 35-142 (178)
387 cd00861 ProRS_anticodon_short 28.6 1.1E+02 0.0023 22.6 4.2 35 16-50 3-39 (94)
388 COG0771 MurD UDP-N-acetylmuram 28.4 95 0.0021 31.1 4.8 34 13-51 6-39 (448)
389 cd01983 Fer4_NifH The Fer4_Nif 28.3 1.3E+02 0.0029 21.7 4.8 33 17-49 2-34 (99)
390 TIGR00355 purH phosphoribosyla 28.2 80 0.0017 31.9 4.2 85 29-124 11-100 (511)
391 PRK08155 acetolactate synthase 28.2 76 0.0016 33.0 4.4 90 280-379 3-109 (564)
392 cd01121 Sms Sms (bacterial rad 28.1 5.8E+02 0.012 24.9 10.5 36 16-51 84-119 (372)
393 PF13450 NAD_binding_8: NAD(P) 28.0 75 0.0016 22.2 3.0 21 31-51 8-28 (68)
394 PRK12921 2-dehydropantoate 2-r 27.9 70 0.0015 30.0 3.8 31 15-50 1-31 (305)
395 PRK07533 enoyl-(acyl carrier p 27.9 1.2E+02 0.0026 27.6 5.2 34 15-50 10-44 (258)
396 PRK01372 ddl D-alanine--D-alan 27.9 91 0.002 29.2 4.5 38 14-51 4-45 (304)
397 PRK14619 NAD(P)H-dependent gly 27.7 79 0.0017 29.9 4.1 33 14-51 4-36 (308)
398 PRK12342 hypothetical protein; 27.7 1.1E+02 0.0023 28.1 4.7 32 114-145 108-145 (254)
399 cd02033 BchX Chlorophyllide re 27.5 1.3E+02 0.0029 28.7 5.5 40 12-51 29-68 (329)
400 PRK03359 putative electron tra 27.5 1.1E+02 0.0024 28.1 4.8 32 114-145 111-148 (256)
401 PF03446 NAD_binding_2: NAD bi 27.4 71 0.0015 26.8 3.3 31 15-50 2-32 (163)
402 PRK14569 D-alanyl-alanine synt 27.4 1.3E+02 0.0027 28.3 5.4 37 14-50 3-43 (296)
403 PF04493 Endonuclease_5: Endon 27.3 77 0.0017 28.0 3.5 32 114-145 88-126 (206)
404 PF06418 CTP_synth_N: CTP synt 27.3 74 0.0016 29.2 3.5 36 16-51 2-40 (276)
405 TIGR01380 glut_syn glutathione 27.2 98 0.0021 29.4 4.6 37 15-51 1-40 (312)
406 TIGR02898 spore_YhcN_YlaJ spor 27.0 1.9E+02 0.004 24.4 5.6 34 424-461 123-156 (158)
407 PRK08939 primosomal protein Dn 27.0 1.2E+02 0.0027 28.6 5.1 38 14-51 156-193 (306)
408 COG1154 Dxs Deoxyxylulose-5-ph 26.9 5.4E+02 0.012 26.9 9.7 111 271-418 499-622 (627)
409 PRK12367 short chain dehydroge 26.8 74 0.0016 28.9 3.6 43 5-50 3-46 (245)
410 PRK10490 sensor protein KdpD; 26.8 84 0.0018 34.9 4.6 40 12-51 22-61 (895)
411 cd01452 VWA_26S_proteasome_sub 26.7 1.6E+02 0.0034 25.6 5.3 57 15-71 109-175 (187)
412 PRK13982 bifunctional SbtC-lik 26.7 89 0.0019 31.6 4.3 39 14-53 70-108 (475)
413 COG3349 Uncharacterized conser 26.6 69 0.0015 32.3 3.5 32 15-51 1-32 (485)
414 TIGR01918 various_sel_PB selen 26.6 1.1E+02 0.0023 30.3 4.6 38 356-393 348-387 (431)
415 PRK04761 ppnK inorganic polyph 26.5 36 0.00078 31.0 1.4 28 351-380 26-57 (246)
416 PRK06718 precorrin-2 dehydroge 26.5 96 0.0021 27.3 4.1 34 13-51 9-42 (202)
417 TIGR01917 gly_red_sel_B glycin 26.5 1E+02 0.0023 30.3 4.5 47 88-141 56-112 (431)
418 COG3340 PepE Peptidase E [Amin 26.5 4.2E+02 0.0092 23.6 7.8 43 264-307 24-66 (224)
419 TIGR01744 XPRTase xanthine pho 26.3 1.4E+02 0.0029 26.1 4.9 30 114-143 49-80 (191)
420 cd02072 Glm_B12_BD B12 binding 26.1 1E+02 0.0023 24.8 3.8 36 16-51 1-36 (128)
421 PF09334 tRNA-synt_1g: tRNA sy 26.0 60 0.0013 32.0 2.9 26 26-51 17-45 (391)
422 PRK00652 lpxK tetraacyldisacch 25.7 1.3E+02 0.0029 28.7 5.1 38 16-53 51-90 (325)
423 PRK14076 pnk inorganic polypho 25.7 77 0.0017 33.0 3.8 53 350-420 348-404 (569)
424 PRK00421 murC UDP-N-acetylmura 25.6 91 0.002 31.4 4.3 34 12-49 5-38 (461)
425 COG2084 MmsB 3-hydroxyisobutyr 25.6 97 0.0021 29.0 4.0 31 16-51 2-32 (286)
426 TIGR00143 hypF [NiFe] hydrogen 25.5 1.3E+02 0.0028 32.3 5.5 53 97-153 401-454 (711)
427 PF02780 Transketolase_C: Tran 25.3 1.2E+02 0.0027 23.9 4.2 35 14-50 9-43 (124)
428 PRK05225 ketol-acid reductoiso 25.2 30 0.00065 34.5 0.7 34 13-51 35-68 (487)
429 COG0163 UbiX 3-polyprenyl-4-hy 25.2 1.5E+02 0.0032 25.6 4.7 37 14-51 2-38 (191)
430 PRK05282 (alpha)-aspartyl dipe 25.2 2.8E+02 0.006 25.1 6.8 42 264-307 24-65 (233)
431 PRK00881 purH bifunctional pho 25.2 97 0.0021 31.5 4.2 95 16-124 6-105 (513)
432 PLN02293 adenine phosphoribosy 25.1 2.1E+02 0.0046 24.8 5.9 29 114-142 61-91 (187)
433 PF10820 DUF2543: Protein of u 24.9 2.3E+02 0.0049 19.9 4.6 39 413-460 39-77 (81)
434 PF13460 NAD_binding_10: NADH( 24.7 83 0.0018 26.7 3.4 42 23-68 5-46 (183)
435 PLN02662 cinnamyl-alcohol dehy 24.7 1.2E+02 0.0025 28.6 4.7 35 13-51 3-37 (322)
436 COG4081 Uncharacterized protei 24.6 1.5E+02 0.0031 23.9 4.2 35 17-51 6-41 (148)
437 PRK06526 transposase; Provisio 24.6 81 0.0018 28.9 3.4 38 13-50 97-134 (254)
438 PRK07414 cob(I)yrinic acid a,c 24.5 4.6E+02 0.0099 22.6 9.9 101 13-126 20-126 (178)
439 TIGR03453 partition_RepA plasm 24.5 1.3E+02 0.0027 29.6 4.9 36 16-51 106-142 (387)
440 PF03721 UDPG_MGDP_dh_N: UDP-g 24.5 1.2E+02 0.0026 26.2 4.3 32 15-51 1-32 (185)
441 PRK12315 1-deoxy-D-xylulose-5- 24.4 5.7E+02 0.012 26.8 9.9 52 358-418 524-580 (581)
442 PRK08229 2-dehydropantoate 2-r 24.4 89 0.0019 29.9 3.8 32 15-51 3-34 (341)
443 KOG2825 Putative arsenite-tran 24.2 2.3E+02 0.0049 26.0 5.8 43 11-53 15-58 (323)
444 COG2230 Cfa Cyclopropane fatty 24.1 32 0.0007 31.9 0.7 39 359-398 80-121 (283)
445 COG1058 CinA Predicted nucleot 24.0 1.8E+02 0.0038 26.7 5.3 69 290-381 21-96 (255)
446 PRK09134 short chain dehydroge 24.0 1.5E+02 0.0031 26.9 5.0 33 15-50 9-41 (258)
447 PRK12827 short chain dehydroge 23.9 1.6E+02 0.0035 26.2 5.3 33 14-50 6-38 (249)
448 PF05014 Nuc_deoxyrib_tr: Nucl 23.9 60 0.0013 25.3 2.1 40 345-384 56-101 (113)
449 PLN00016 RNA-binding protein; 23.8 98 0.0021 30.2 4.0 35 15-51 53-89 (378)
450 cd01075 NAD_bind_Leu_Phe_Val_D 23.8 1.1E+02 0.0023 26.9 3.9 31 13-48 27-57 (200)
451 COG2733 Predicted membrane pro 23.5 2E+02 0.0043 28.0 5.6 54 360-415 38-106 (415)
452 COG1090 Predicted nucleoside-d 23.5 4.1E+02 0.0089 24.8 7.5 27 23-51 5-31 (297)
453 TIGR03029 EpsG chain length de 23.4 1.7E+02 0.0037 26.9 5.4 37 15-51 103-141 (274)
454 PF05225 HTH_psq: helix-turn-h 23.4 94 0.002 19.7 2.5 27 406-434 1-27 (45)
455 PRK07178 pyruvate carboxylase 23.4 5.8E+02 0.013 25.8 9.6 33 15-52 3-35 (472)
456 PRK09213 pur operon repressor; 23.3 1.6E+02 0.0034 27.3 4.9 30 114-143 129-160 (271)
457 KOG0081 GTPase Rab27, small G 23.2 2.1E+02 0.0045 24.0 5.0 32 114-145 123-164 (219)
458 cd01976 Nitrogenase_MoFe_alpha 23.2 1.1E+02 0.0023 30.6 4.2 27 114-143 368-394 (421)
459 cd00550 ArsA_ATPase Oxyanion-t 23.1 1.4E+02 0.0031 27.2 4.8 36 17-52 3-38 (254)
460 PF12169 DNA_pol3_gamma3: DNA 23.1 2.5E+02 0.0055 22.7 5.9 48 405-460 13-60 (143)
461 PRK03094 hypothetical protein; 23.1 76 0.0017 23.2 2.2 20 31-50 10-29 (80)
462 COG3140 Uncharacterized protei 23.1 1.9E+02 0.0041 19.2 3.7 28 428-459 15-42 (60)
463 cd02040 NifH NifH gene encodes 23.0 1.4E+02 0.003 27.3 4.8 36 16-51 3-38 (270)
464 PRK00771 signal recognition pa 22.9 1.7E+02 0.0037 29.3 5.5 39 13-51 94-132 (437)
465 PRK13230 nitrogenase reductase 22.8 1.5E+02 0.0032 27.5 4.9 36 16-51 3-38 (279)
466 CHL00194 ycf39 Ycf39; Provisio 22.8 1.4E+02 0.0029 28.3 4.7 33 15-51 1-33 (317)
467 PF00070 Pyr_redox: Pyridine n 22.7 1.2E+02 0.0025 21.7 3.3 22 30-51 10-31 (80)
468 PF08357 SEFIR: SEFIR domain; 22.7 1.1E+02 0.0024 25.1 3.7 30 18-47 5-35 (150)
469 PF03308 ArgK: ArgK protein; 22.7 1.5E+02 0.0032 27.3 4.5 40 12-51 27-66 (266)
470 PRK14494 putative molybdopteri 22.6 1.6E+02 0.0034 26.6 4.7 35 16-50 3-37 (229)
471 COG1763 MobB Molybdopterin-gua 22.6 1.8E+02 0.0039 24.5 4.8 36 16-51 4-39 (161)
472 PRK09288 purT phosphoribosylgl 22.6 2.1E+02 0.0046 27.9 6.2 40 6-51 5-44 (395)
473 TIGR01743 purR_Bsub pur operon 22.5 1.7E+02 0.0036 27.1 4.9 30 114-143 127-158 (268)
474 PRK12377 putative replication 22.5 1.4E+02 0.0031 27.2 4.5 35 16-50 103-137 (248)
475 PHA02518 ParA-like protein; Pr 22.5 1.7E+02 0.0037 25.4 5.0 36 16-51 2-38 (211)
476 COG3195 Uncharacterized protei 22.5 3.6E+02 0.0077 22.8 6.2 75 363-438 88-164 (176)
477 cd03412 CbiK_N Anaerobic cobal 22.4 1.6E+02 0.0034 23.6 4.3 38 274-311 1-40 (127)
478 PF02350 Epimerase_2: UDP-N-ac 22.4 1.4E+02 0.003 28.8 4.7 30 114-143 66-98 (346)
479 PRK13869 plasmid-partitioning 22.3 1.5E+02 0.0032 29.4 5.0 36 16-51 123-159 (405)
480 PRK07952 DNA replication prote 22.3 1.6E+02 0.0034 26.9 4.7 35 16-50 101-135 (244)
481 PHA02857 monoglyceride lipase; 22.1 1.4E+02 0.0031 27.2 4.6 36 15-50 25-60 (276)
482 TIGR03026 NDP-sugDHase nucleot 22.0 1.2E+02 0.0026 30.0 4.3 32 15-51 1-32 (411)
483 PF08542 Rep_fac_C: Replicatio 22.0 3.2E+02 0.0069 19.9 5.8 47 406-460 4-50 (89)
484 PRK13234 nifH nitrogenase redu 21.9 1.7E+02 0.0036 27.5 5.0 37 15-51 5-41 (295)
485 COG2120 Uncharacterized protei 21.9 1.6E+02 0.0035 26.6 4.7 39 13-51 9-47 (237)
486 PF03698 UPF0180: Uncharacteri 21.9 82 0.0018 23.0 2.2 21 31-51 10-30 (80)
487 TIGR01969 minD_arch cell divis 21.9 1.6E+02 0.0036 26.4 4.9 36 16-51 2-38 (251)
488 PHA02754 hypothetical protein; 21.9 1.7E+02 0.0036 19.7 3.4 23 413-438 6-28 (67)
489 PF06506 PrpR_N: Propionate ca 21.9 79 0.0017 27.0 2.6 109 26-145 17-152 (176)
490 COG0467 RAD55 RecA-superfamily 21.8 1.8E+02 0.004 26.5 5.2 38 15-52 24-61 (260)
491 COG3367 Uncharacterized conser 21.8 4.7E+02 0.01 24.9 7.6 47 5-51 138-186 (339)
492 PRK06111 acetyl-CoA carboxylas 21.8 7.5E+02 0.016 24.6 10.1 32 15-51 3-34 (450)
493 PRK06395 phosphoribosylamine-- 21.8 3.8E+02 0.0083 26.8 7.8 31 15-50 3-33 (435)
494 TIGR00730 conserved hypothetic 21.7 1.1E+02 0.0025 26.2 3.5 101 263-378 23-132 (178)
495 PHA02519 plasmid partition pro 21.7 1.6E+02 0.0034 29.0 4.9 34 16-49 108-142 (387)
496 PRK13185 chlL protochlorophyll 21.6 1.6E+02 0.0034 27.1 4.7 36 16-51 4-39 (270)
497 cd01840 SGNH_hydrolase_yrhL_li 21.6 1.9E+02 0.0041 23.7 4.8 39 273-312 50-88 (150)
498 COG1937 Uncharacterized protei 21.4 3.6E+02 0.0078 20.2 5.6 26 435-461 63-88 (89)
499 PF03205 MobB: Molybdopterin g 21.3 1.7E+02 0.0037 23.9 4.3 35 16-50 2-36 (140)
500 PRK06180 short chain dehydroge 21.2 1.5E+02 0.0032 27.2 4.6 32 16-50 5-36 (277)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-65 Score=500.92 Aligned_cols=443 Identities=43% Similarity=0.788 Sum_probs=343.9
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHH
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNP-SNYPHFTFCSIQDGLSETEASTTDFVALISVLHV 91 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (461)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....++++..+|+++|++.........++..+.+
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~ 85 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNK 85 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHH
Confidence 456999999999999999999999999999999999998664221 1124699999998887642111223345555555
Q ss_pred HcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCC-CCCCCC
Q 012543 92 KCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGY-FPIQDS 170 (461)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~ 170 (461)
.+...+.+.++.+..... .++++||+|.+..|+..+|+++|||++.++++++.....+.+++....... .|....
T Consensus 86 ~~~~~~~~~L~~l~~~~~----~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
T PLN02410 86 ECQVSFKDCLGQLVLQQG----NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEP 161 (451)
T ss_pred HhHHHHHHHHHHHHhccC----CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcccc
Confidence 666667777776643222 457999999999999999999999999999999988877665433322111 121110
Q ss_pred -CCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccC
Q 012543 171 -HDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKY 249 (461)
Q Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~ 249 (461)
.+....+++++.++..+++.........+...+... .....++.+++||+.+||...++++...+++|+.+|||++..
T Consensus 162 ~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~ 240 (451)
T PLN02410 162 KGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLV 240 (451)
T ss_pred ccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccc
Confidence 011124666766666666632211111222222222 234678899999999999999999887666789999999864
Q ss_pred CCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHH
Q 012543 250 YPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFL 329 (461)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~ 329 (461)
... +......++++.+||++++++++|||||||....+.+++.+++.+|+.++++|||++..+...+.++...+|+++.
T Consensus 241 ~~~-~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~ 319 (451)
T PLN02410 241 ASA-PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFS 319 (451)
T ss_pred cCC-CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHH
Confidence 321 0111122345789999988899999999999999999999999999999999999998532111121234899999
Q ss_pred HHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHH
Q 012543 330 EMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGE 409 (461)
Q Consensus 330 ~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~ 409 (461)
++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||+++++.||+|+.+...++.++
T Consensus 320 er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 320 KIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred HhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875799999966789999
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 410 VERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 410 l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
|.++|+++|.++++++||+++++|++++++++.+|||+++.+++|+++++.|
T Consensus 400 v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 400 VERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 9999999998855779999999999999999999999999999999999865
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=8.6e-62 Score=478.19 Aligned_cols=437 Identities=29% Similarity=0.526 Sum_probs=337.1
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCceEEEcCCCCCCCcCCc
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPS----------N---YPHFTFCSIQDGLSETEAST 79 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~ 79 (461)
.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..... . ...++|..+|++++++....
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~ 85 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRR 85 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccc
Confidence 4579999999999999999999999999999999999985433111 0 11256766777887654323
Q ss_pred ccHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhh
Q 012543 80 TDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVL 159 (461)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 159 (461)
.+...++..+...+...+.+.++.+... . ..++|||+|.+..|+..+|+++|||++.++++++.....+.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~----~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~-- 158 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQ-G----RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY-- 158 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhcc-C----CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh--
Confidence 3444445445445666666666655321 1 23499999999999999999999999999999998888776542
Q ss_pred hhcCCCCCCCC--CCCcccCCCCCCCCCCCCCccccc--hhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhh
Q 012543 160 SQKGYFPIQDS--HDLEAPVPELPPLRMKDIPVIETL--YQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHRE 235 (461)
Q Consensus 160 ~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 235 (461)
....+.... .+..-.+++++.++..+++..... ....+.+.+.+.......++.+++||+.+||...++.+...
T Consensus 159 --~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~ 236 (480)
T PLN02555 159 --HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL 236 (480)
T ss_pred --hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC
Confidence 221221110 111224678877777887743311 12233344444455667788999999999999988887653
Q ss_pred CCCCccccCcCccCCCC--C--cCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEEC
Q 012543 236 FPIPSFPIGPFHKYYPA--S--ASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVR 311 (461)
Q Consensus 236 ~~~~~~~vG~~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 311 (461)
. ++..|||+...... . +...+..++++.+||++++++++|||||||....+.+++.+++.+++..+++|||++.
T Consensus 237 ~--~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~ 314 (480)
T PLN02555 237 C--PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMR 314 (480)
T ss_pred C--CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 2 59999999753211 0 0111233456999999988889999999999999999999999999999999999987
Q ss_pred CCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHH
Q 012543 312 PGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYV 391 (461)
Q Consensus 312 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v 391 (461)
............+|+++.++.++|+++++|+||.+||.|.++++||||||+||++||+++|||||++|+++||+.||+++
T Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 394 (480)
T PLN02555 315 PPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394 (480)
T ss_pred cCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH
Confidence 43110000023488899888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceeecC-----C-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 392 SDVWKVGLHLE-----R-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 392 ~~~lG~G~~l~-----~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
++.||+|+.+. . .++.++|.++|+++|.+++|..+|+||++|+++.++++.+|||+++.+++|++.+.+
T Consensus 395 ~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 395 VDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 88679999993 3 589999999999999886678999999999999999999999999999999999864
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.6e-61 Score=470.98 Aligned_cols=422 Identities=27% Similarity=0.486 Sum_probs=329.7
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC--CCCCCceEEEcCCCCCCCc-CCcccHHHHHHH
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNP--SNYPHFTFCSIQDGLSETE-ASTTDFVALISV 88 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (461)
+++.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ...+++++..+|++++++. ....+...++..
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 5667999999999999999999999999999999999998654322 1124699999999888742 333345555555
Q ss_pred HHHHcchhHHHHHHHHhhcccccCCCCc-cEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCC
Q 012543 89 LHVKCAAPFQDCLAKLLSNAEEKEEEPI-ACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPI 167 (461)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~p-Dlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 167 (461)
+.+.+...+++.++.+... .+| ++||+|.+..|+..+|+++|||++.++++++.....+.. +... .
T Consensus 83 ~~~~~~~~~~~~l~~~~~~------~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~-~----- 149 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQST------DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYIN-N----- 149 (449)
T ss_pred HHHhhhHHHHHHHHHhhcc------CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhc-c-----
Confidence 5556666777766665321 345 999999999999999999999999999987776655432 1111 0
Q ss_pred CCCCCCcccCCCCCCCCCCCCCccccc--hhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCc
Q 012543 168 QDSHDLEAPVPELPPLRMKDIPVIETL--YQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGP 245 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~ 245 (461)
......+++++.++..+++..... ......+.+.........++.+++||+.++|...++++... .++..|||
T Consensus 150 ---~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGP 224 (449)
T PLN02173 150 ---GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGP 224 (449)
T ss_pred ---CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcc
Confidence 011123566776777777643311 11122333333345567788999999999999988888652 47999999
Q ss_pred CccCC-------CCCcC--CCc--cCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCc
Q 012543 246 FHKYY-------PASAS--SLL--SQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGL 314 (461)
Q Consensus 246 ~~~~~-------~~~~~--~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 314 (461)
++... ..... ..+ +.++++.+||+.++.+++|||||||....+.+++.+++.++ .+.+|||++..+.
T Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~ 302 (449)
T PLN02173 225 TVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE 302 (449)
T ss_pred cCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc
Confidence 97421 00000 011 23345899999988889999999999999999999999999 5678999997542
Q ss_pred cCCchhcccCchhHHHHh-cCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHH
Q 012543 315 VRGAEWIELLPRGFLEML-DGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSD 393 (461)
Q Consensus 315 ~~~~~~~~~lp~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 393 (461)
...+|+++.++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++
T Consensus 303 ------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~ 376 (449)
T PLN02173 303 ------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376 (449)
T ss_pred ------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHH
Confidence 234888888887 5788999999999999999999999999999999999999999999999999999999997
Q ss_pred hhhceeecCC-----ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 394 VWKVGLHLER-----KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 394 ~lG~G~~l~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
.||+|+.+.. .++.++|.++|+++|.|++|..+|+||++++++.++++.++|++++.+++|++.+.
T Consensus 377 ~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 377 VWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 6799998853 25999999999999988667899999999999999999999999999999999874
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-61 Score=473.99 Aligned_cols=428 Identities=30% Similarity=0.522 Sum_probs=326.4
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEEcCCCCCCCcCCcccHHHHHHH
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPS----NYPHFTFCSIQDGLSETEASTTDFVALISV 88 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (461)
.+.||+++|++++||++|++.||+.|+.+|++|||++++.+..... ...+++++.+|++++++. ..++..+...
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l~~a 82 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSIENS 82 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHHHHH
Confidence 3469999999999999999999999999999999999986542211 123699999998765422 1233333333
Q ss_pred HHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCC
Q 012543 89 LHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQ 168 (461)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (461)
+...+...+.+.++++... ..+++||+|.+..|+..+|+++|||++.++++++.....+.+.+........+..
T Consensus 83 ~~~~~~~~l~~ll~~l~~~------~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (448)
T PLN02562 83 MENTMPPQLERLLHKLDED------GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET 156 (448)
T ss_pred HHHhchHHHHHHHHHhcCC------CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc
Confidence 3335556666666554321 2358999999999999999999999999999988777765544432222221111
Q ss_pred C-CC--CCcccCCCCCCCCCCCCCccccch--hhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhh----CCCC
Q 012543 169 D-SH--DLEAPVPELPPLRMKDIPVIETLY--QETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHRE----FPIP 239 (461)
Q Consensus 169 ~-~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~ 239 (461)
. .. .....+++++.++.++++...... .....+.+.+..+....++.+++||+.+||...++..... ..++
T Consensus 157 ~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 236 (448)
T PLN02562 157 GCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQ 236 (448)
T ss_pred cccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCC
Confidence 0 00 111135667667777777533111 2223444444455667788999999999998877765432 2356
Q ss_pred ccccCcCccCCCCC--cCCCccCcchhhhhcCCCCCCeEEEEEccccc-cCCHHHHHHHHHHHHhCCCceEEEECCCccC
Q 012543 240 SFPIGPFHKYYPAS--ASSLLSQDRICISRLDKQAPKSVIYVSFGSIA-AIDETKFLEVAWGLANSKVPFLWVVRPGLVR 316 (461)
Q Consensus 240 ~~~vG~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 316 (461)
++.|||+....... ....++.+.++.+||++++++++|||||||.. ..+.+++..++.+++.++++|||++..+.
T Consensus 237 v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~-- 314 (448)
T PLN02562 237 ILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW-- 314 (448)
T ss_pred EEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--
Confidence 99999998653210 01123445557799999888899999999976 57889999999999999999999997532
Q ss_pred CchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhh
Q 012543 317 GAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWK 396 (461)
Q Consensus 317 ~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG 396 (461)
...+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|
T Consensus 315 ----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 315 ----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred ----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 1248889999999999999999999999999999999999999999999999999999999999999999986579
Q ss_pred ceeecCCccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 397 VGLHLERKLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 397 ~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
+|+.+.. ++.++|.++|+++|.| ++||+||+++++++.++ ..||||++.+++|++.++
T Consensus 391 ~g~~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9988864 8999999999999999 89999999999999876 567999999999999874
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.5e-61 Score=471.42 Aligned_cols=436 Identities=26% Similarity=0.400 Sum_probs=323.5
Q ss_pred cccCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CCCCceEEEcC----CCCCCCcCCc
Q 012543 9 MQQKKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPS-----NYPHFTFCSIQ----DGLSETEAST 79 (461)
Q Consensus 9 m~~~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~ 79 (461)
|....+.||+++|++++||++|++.||+.|+.||+.|||++++.+..... ...+++++.+| ++++++....
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~ 80 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESS 80 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccc
Confidence 44456789999999999999999999999999999999999986642211 11358899888 6777554332
Q ss_pred ccHH----HHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhh
Q 012543 80 TDFV----ALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAA 155 (461)
Q Consensus 80 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~ 155 (461)
.+.. ..+....+.+ ...++++++. .++++||+|.+..|+..+|+++|||++.++++++.....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~ 150 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLL----EPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGP 150 (472)
T ss_pred cccchhhHHHHHHHHHHh----HHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhh
Confidence 2221 1222233333 3444444432 458999999999999999999999999999998877776543
Q ss_pred hhhhhhcCCCCCCCCCCCcccCCCC-C-----CCCCCCCCccccc--hhhhHHHHHHHHHHhccCccEEEEcChhHhhHH
Q 012543 156 LPVLSQKGYFPIQDSHDLEAPVPEL-P-----PLRMKDIPVIETL--YQETLHQFAAEAINQMKASSGCIWNSVQELEQD 227 (461)
Q Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 227 (461)
..........+... ..+ ..++++ + .++..+++..... ........+.........++.+++||+.+||..
T Consensus 151 ~~~~~~~~~~~~~~-~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~ 228 (472)
T PLN02670 151 PSSLMEGGDLRSTA-EDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPE 228 (472)
T ss_pred hHhhhhcccCCCcc-ccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHH
Confidence 22111111111111 011 012222 1 1333454432211 011112222233344567889999999999999
Q ss_pred HHHHHHhhCCCCccccCcCccCCCCCcC-CCc--cCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCC
Q 012543 228 SLAKFHREFPIPSFPIGPFHKYYPASAS-SLL--SQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKV 304 (461)
Q Consensus 228 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~-~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (461)
.+++++..+..+++.|||++........ ... ..++++.+||++++++++|||||||....+.+++.+++.+|+.+++
T Consensus 229 ~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 229 WFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 9999877556789999999753111000 001 1125689999998889999999999999999999999999999999
Q ss_pred ceEEEECCCccCCchhcccCchhHHHHhcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccch
Q 012543 305 PFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGE 383 (461)
Q Consensus 305 ~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~D 383 (461)
+|||++.............+|+++.++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 309 ~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 388 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNE 388 (472)
T ss_pred CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhc
Confidence 99999985321100112359999999999998875 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhceeecCC-----ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 384 QMVIARYVSDVWKVGLHLER-----KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 384 Q~~na~~v~~~lG~G~~l~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
|+.||+++++ +|+|+.+.. .++.++|.++|+++|.|++|.+||+||+++++.++ +.++..+++++|+++|
T Consensus 389 Q~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l 463 (472)
T PLN02670 389 QGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYL 463 (472)
T ss_pred cHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHH
Confidence 9999999998 699999964 38999999999999988556799999999999999 8999999999999999
Q ss_pred HcC
Q 012543 459 LSY 461 (461)
Q Consensus 459 ~~~ 461 (461)
.++
T Consensus 464 ~~~ 466 (472)
T PLN02670 464 REN 466 (472)
T ss_pred HHh
Confidence 874
No 6
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-60 Score=473.36 Aligned_cols=430 Identities=30% Similarity=0.515 Sum_probs=324.5
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCceEEEcCCCCCCCcCCcccHHHHH
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSN---YPHFTFCSIQDGLSETEASTTDFVALI 86 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
.++.||+++|+|++||++|+++||++|+++ ||+|||++++.+...... ..+++|+.+|+++++......+....+
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~~~ 87 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPGFL 87 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHHHH
Confidence 457899999999999999999999999999 999999999855332221 247999999987665433223444444
Q ss_pred HHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCC
Q 012543 87 SVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFP 166 (461)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 166 (461)
..+.+.+...+++.++.+. .++|+||+|.++.|+..+|+++|||+|.++++++.....+.+.+........+
T Consensus 88 ~~~~~~~~~~~~~~l~~~~--------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 88 EAVMTKMEAPFEQLLDRLE--------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred HHHHHHhHHHHHHHHHhcC--------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 4443344444444444431 35899999999999999999999999999999887766655544322211112
Q ss_pred CCCC---CCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCcccc
Q 012543 167 IQDS---HDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPI 243 (461)
Q Consensus 167 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~v 243 (461)
.... ......+++++.++..+++...........+.+.........++.+++||+.+||...++++.+.++.++..|
T Consensus 160 ~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~i 239 (459)
T PLN02448 160 VELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPI 239 (459)
T ss_pred CccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEe
Confidence 1110 0111124555556666665332122222233334444455667899999999999998998887666689999
Q ss_pred CcCccCCCC--CcCC-Cc-cCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCch
Q 012543 244 GPFHKYYPA--SASS-LL-SQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAE 319 (461)
Q Consensus 244 G~~~~~~~~--~~~~-~~-~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 319 (461)
||+...... .... .. +.+.++.+||+.++++++|||||||....+.+++.+++++|+..+++|||++....
T Consensus 240 GP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~----- 314 (459)
T PLN02448 240 GPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA----- 314 (459)
T ss_pred cCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch-----
Confidence 999753211 0000 01 12236889999988889999999999888889999999999999999999876431
Q ss_pred hcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhcee
Q 012543 320 WIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGL 399 (461)
Q Consensus 320 ~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 399 (461)
..+.+..++|+++.+|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||+++++.||+|+
T Consensus 315 ------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~ 388 (459)
T PLN02448 315 ------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGW 388 (459)
T ss_pred ------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceE
Confidence 12333345677889999999999999999999999999999999999999999999999999999987679998
Q ss_pred ecCC------ccCHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 400 HLER------KLERGEVERAIRRVMVDA--EGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 400 ~l~~------~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
.+.. .+++++|+++|+++|.++ ++..||+||++|++++++++.+|||+++.+++|++.+.+
T Consensus 389 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 389 RVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 8842 479999999999999863 367999999999999999999999999999999999874
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.5e-60 Score=464.70 Aligned_cols=438 Identities=26% Similarity=0.406 Sum_probs=328.2
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-C----C----CCCCCceEEEcCCCCCCCc-CCccc
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKG--FSITIIHTKFNSP-N----P----SNYPHFTFCSIQDGLSETE-ASTTD 81 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rG--h~V~~~~~~~~~~-~----~----~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (461)
+.||+++|++++||++|++.||+.|+.+| ..|||++++.+.. . . ....+++|..+|+...... ....+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 45999999999999999999999999998 9999999985431 0 1 1123699999996432111 11233
Q ss_pred HHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCc-cEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhh
Q 012543 82 FVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPI-ACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLS 160 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-Dlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 160 (461)
....+..+...+...+++.++++++.... ..+| +|||+|.+..|+..+|+++|||++.++++++.....+...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLAL--DGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhcc--CCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 44344344445555555555555442110 0234 89999999999999999999999999999988877765543221
Q ss_pred hcC-CCCCCCCCCCcccCCCC-CCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHh-hCC
Q 012543 161 QKG-YFPIQDSHDLEAPVPEL-PPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHR-EFP 237 (461)
Q Consensus 161 ~~~-~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~ 237 (461)
... ..+... .+..-.++++ +.++..+++....... . ...+.+......+++.+++||++++|.+.++.... ...
T Consensus 161 ~~~~~~~~~~-~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~ 237 (468)
T PLN02207 161 SKDTSVFVRN-SEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNY 237 (468)
T ss_pred ccccccCcCC-CCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCC
Confidence 111 011001 0111236776 4677777774331111 1 22333344456788999999999999998888754 233
Q ss_pred CCccccCcCccCCCCCcC-CCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccC
Q 012543 238 IPSFPIGPFHKYYPASAS-SLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVR 316 (461)
Q Consensus 238 ~~~~~vG~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 316 (461)
++++.|||++........ .....++++.+||++++++++|||||||....+.+++.+++.+|+.++++|||++......
T Consensus 238 p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~ 317 (468)
T PLN02207 238 PSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVT 317 (468)
T ss_pred CcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCcc
Confidence 569999999864322000 0011235699999998888999999999999999999999999999999999999853211
Q ss_pred CchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhh
Q 012543 317 GAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWK 396 (461)
Q Consensus 317 ~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG 396 (461)
. .+.+|+++.++.++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|
T Consensus 318 ~---~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~g 394 (468)
T PLN02207 318 N---DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELK 394 (468)
T ss_pred c---cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhC
Confidence 1 1348999999999999999999999999999999999999999999999999999999999999999998766579
Q ss_pred ceeecC------C--ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 397 VGLHLE------R--KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 397 ~G~~l~------~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
+|+.+. . .++.++|.++|+++|.+ ++++||+||++|++.+++++.+|||+++.+++|++.++-
T Consensus 395 vGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 395 LAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred ceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 999662 1 35999999999999973 238999999999999999999999999999999998863
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2e-60 Score=468.85 Aligned_cols=425 Identities=31% Similarity=0.502 Sum_probs=320.8
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCCC----CCCceEEEcCCCCCCCcCCcccHHHHH
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANI--LYSKGFSITIIHTKFNSPNPSN----YPHFTFCSIQDGLSETEASTTDFVALI 86 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~--L~~rGh~V~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
++.||+++|+|++||++|++.||++ |++||++|||++++.+...... ...+++..++++++++.. .+...++
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~~~~~ 84 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAPETLL 84 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCHHHHH
Confidence 4579999999999999999999999 5699999999999865432211 235788877877776542 2333344
Q ss_pred HHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCC
Q 012543 87 SVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFP 166 (461)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 166 (461)
..+.+.+.. .++++++. .+||+||+|.++.|+..+|+++|||.+.++++++..+..+.+.+... ...+
T Consensus 85 ~~~~~~~~~----~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~~ 152 (456)
T PLN02210 85 KSLNKVGAK----NLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSFP 152 (456)
T ss_pred HHHHHhhhH----HHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCCC
Confidence 434333333 33333332 56999999999999999999999999999999888877665432111 1111
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCccccchhhh-HHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCc
Q 012543 167 IQDSHDLEAPVPELPPLRMKDIPVIETLYQET-LHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGP 245 (461)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~ 245 (461)
......-...+++++.++..+++......... +.....+..+....++.+++||+.++|...+++... + +++++|||
T Consensus 153 ~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~~VGP 230 (456)
T PLN02210 153 DLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVIPIGP 230 (456)
T ss_pred cccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEEEEcc
Confidence 11100011235666666667766432222211 222333343455667899999999999999888766 2 57999999
Q ss_pred CccCC---CC-----Cc--CCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCcc
Q 012543 246 FHKYY---PA-----SA--SSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLV 315 (461)
Q Consensus 246 ~~~~~---~~-----~~--~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 315 (461)
+.... .. .+ ...+..++++.+||++++++++|||||||....+.+++.+++.+++..+++|||+++...
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~- 309 (456)
T PLN02210 231 LVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE- 309 (456)
T ss_pred cCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc-
Confidence 97421 10 00 001234556899999988899999999999988999999999999999999999997532
Q ss_pred CCchhcccCchhHHHHh-cCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHh
Q 012543 316 RGAEWIELLPRGFLEML-DGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDV 394 (461)
Q Consensus 316 ~~~~~~~~lp~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 394 (461)
....+..+.++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.
T Consensus 310 -----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~ 384 (456)
T PLN02210 310 -----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDV 384 (456)
T ss_pred -----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHH
Confidence 111334555555 47888899999999999999999999999999999999999999999999999999999874
Q ss_pred hhceeecCC-----ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 395 WKVGLHLER-----KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 395 lG~G~~l~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
||+|+.+.. .++.++|.++|+++|.+++|..+|+||++|++..++++.+|||+++.+++|++.+.
T Consensus 385 ~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 385 FGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred hCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 699999853 48999999999999988667789999999999999999999999999999999875
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3e-60 Score=465.94 Aligned_cols=429 Identities=27% Similarity=0.446 Sum_probs=323.7
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC----CCCCCceEEEcCC----CCCCCcCCcccHHH
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILY-SKGFSITIIHTKFNSPNP----SNYPHFTFCSIQD----GLSETEASTTDFVA 84 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~-~rGh~V~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 84 (461)
+.||+++|++++||++|++.||+.|+ .+|+.|||++++.+.... ....++.+..+|. ++++.. .+...
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~~~ 81 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHVVT 81 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccHHH
Confidence 46999999999999999999999998 789999999998664211 1223688888884 433111 11212
Q ss_pred HHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCC
Q 012543 85 LISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGY 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 164 (461)
.+..+.......+++.++++ . .+|++||+|.+..|+..+|+++|||++.++++++.....+.+.+......-
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~----~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEM----H----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhc----C----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 22222233334444444332 2 468999999999999999999999999999998887766554432111100
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhh--C----CC
Q 012543 165 FPIQDSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHRE--F----PI 238 (461)
Q Consensus 165 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~----~~ 238 (461)
.+... ......+++++.++..+++.............+.+.......++.+++||+.+||...++++... + .+
T Consensus 154 ~~~~~-~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 154 EEHTV-QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred ccccc-CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 00000 01112356676677777663221222223344444455667888999999999999999887642 1 25
Q ss_pred CccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccC--
Q 012543 239 PSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVR-- 316 (461)
Q Consensus 239 ~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~-- 316 (461)
+++.|||+...... . ..++++.+||++++++++|||||||...++.+++.+++.+|+.++++|||++......
T Consensus 233 ~v~~VGPl~~~~~~----~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~ 307 (481)
T PLN02992 233 PVYPIGPLCRPIQS----S-KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSA 307 (481)
T ss_pred ceEEecCccCCcCC----C-cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 69999999753221 1 2345689999998889999999999999999999999999999999999999642100
Q ss_pred ------------CchhcccCchhHHHHhcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccch
Q 012543 317 ------------GAEWIELLPRGFLEMLDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGE 383 (461)
Q Consensus 317 ------------~~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~D 383 (461)
.++....+|+++.++.++++.++ +|+||.+||+|+++++||||||+||++||+++|||||++|+++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~D 387 (481)
T PLN02992 308 CSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAE 387 (481)
T ss_pred ccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccch
Confidence 00001348999999998887665 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHH-HhhhceeecCC---ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHHHH
Q 012543 384 QMVIARYVS-DVWKVGLHLER---KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTK--QGSSSYQSLENLISY 457 (461)
Q Consensus 384 Q~~na~~v~-~~lG~G~~l~~---~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~l~~~ 457 (461)
|+.||++++ + +|+|+.++. .++.++|.++|+++|.+++|..+|+++++++++.++++. +||||++.+++|++.
T Consensus 388 Q~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~ 466 (481)
T PLN02992 388 QNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKE 466 (481)
T ss_pred hHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 999999995 6 799999965 489999999999999886678999999999999999995 599999999999998
Q ss_pred HHc
Q 012543 458 ILS 460 (461)
Q Consensus 458 l~~ 460 (461)
+++
T Consensus 467 ~~~ 469 (481)
T PLN02992 467 CQR 469 (481)
T ss_pred HHH
Confidence 875
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-60 Score=469.76 Aligned_cols=439 Identities=25% Similarity=0.387 Sum_probs=323.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC----CCCCCceEEEcC----CCCCCCcCCcccHH-
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNP----SNYPHFTFCSIQ----DGLSETEASTTDFV- 83 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~- 83 (461)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....++++..+| ++++++.....+..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~ 87 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPP 87 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcch
Confidence 467999999999999999999999999999999999998664321 112357776654 25555543332211
Q ss_pred HHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcC
Q 012543 84 ALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKG 163 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (461)
.....+..... .+.+.++++++... .+|++||+|.+..|+..+|+++|||++.++++++.....+.+.....+..
T Consensus 88 ~~~~~~~~a~~-~~~~~~~~~l~~~~----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~ 162 (477)
T PLN02863 88 SGFPLMIHALG-ELYAPLLSWFRSHP----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTK 162 (477)
T ss_pred hhHHHHHHHHH-HhHHHHHHHHHhCC----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccc
Confidence 11112222222 12222222333222 46899999999999999999999999999999999988876643211100
Q ss_pred CCCCCCCC-CC-cccCCCCCCCCCCCCCccccc--hhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCC-C
Q 012543 164 YFPIQDSH-DL-EAPVPELPPLRMKDIPVIETL--YQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFP-I 238 (461)
Q Consensus 164 ~~p~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~ 238 (461)
. +..... .. ...+++++.++..+++..... ....+.+.+.+.......++.+++||+.+||...++++...+. +
T Consensus 163 ~-~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 241 (477)
T PLN02863 163 I-NPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHD 241 (477)
T ss_pred c-cccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCC
Confidence 0 000100 00 112566666777777643311 1112333333333344566789999999999999999987665 5
Q ss_pred CccccCcCccCCCC------CcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECC
Q 012543 239 PSFPIGPFHKYYPA------SASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRP 312 (461)
Q Consensus 239 ~~~~vG~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 312 (461)
++..|||+...... .+......++++.+||++++++++|||||||....+.+++.+++.+++.++++|||+++.
T Consensus 242 ~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~ 321 (477)
T PLN02863 242 RVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKE 321 (477)
T ss_pred CeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999753211 000001123569999999888899999999999989999999999999999999999975
Q ss_pred CccCCchhcccCchhHHHHhcCCCce-eeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHH
Q 012543 313 GLVRGAEWIELLPRGFLEMLDGRGHI-VKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYV 391 (461)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~~~~~~-~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v 391 (461)
......+ ...+|+++.++..++..+ .+|+||.+||+|.++++||||||+||++||+++|||||++|+++||+.||+++
T Consensus 322 ~~~~~~~-~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v 400 (477)
T PLN02863 322 PVNEESD-YSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400 (477)
T ss_pred Ccccccc-hhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHH
Confidence 3211101 245899998887766655 59999999999999999999999999999999999999999999999999997
Q ss_pred HHhhhceeecCC----ccCHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 392 SDVWKVGLHLER----KLERGEVERAIRRVM-VDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 392 ~~~lG~G~~l~~----~~~~~~l~~~i~~ll-~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
.+.||+|+.+.. ..+.+++.++|+++| ++ +.||+||++++++.++++.+||++++.+++|++.++++
T Consensus 401 ~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~---~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 401 VDELKVAVRVCEGADTVPDSDELARVFMESVSEN---QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 644899999843 358999999999999 44 89999999999999999999999999999999999864
No 11
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.8e-59 Score=467.61 Aligned_cols=436 Identities=30% Similarity=0.484 Sum_probs=318.6
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CceEEEcC---CCCCCCcC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSN--------YP----HFTFCSIQ---DGLSETEA 77 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~--------~~----~~~~~~~~---~~~~~~~~ 77 (461)
++.||+++|+|++||++|++.||+.|+.|||+|||++++.+...... .+ .+...++| ++++++..
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 45799999999999999999999999999999999999855421110 11 34556666 45665432
Q ss_pred Ccc--------cHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHH
Q 012543 78 STT--------DFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSS 149 (461)
Q Consensus 78 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~ 149 (461)
... ....+...+. .....+.+.++++.+. .+||+||+|.++.|+..+|+++|||+|.+++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFS 156 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHH
Confidence 221 1112232332 2233455555665543 579999999999999999999999999999998877
Q ss_pred HHHHhhhhhhhhcCCCCCCCCCCCcccCCCCC---CCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhH
Q 012543 150 SLVYAALPVLSQKGYFPIQDSHDLEAPVPELP---PLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQ 226 (461)
Q Consensus 150 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 226 (461)
...+.......+....+.. .. ...+++++ .++..+++.. .....+...+....+...+.+.+++||+.++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~--~~-~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~ 231 (482)
T PLN03007 157 LCASYCIRVHKPQKKVASS--SE-PFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELES 231 (482)
T ss_pred HHHHHHHHhcccccccCCC--Cc-eeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHH
Confidence 6655433211111111100 00 01134443 1222333211 111223444555556677888999999999999
Q ss_pred HHHHHHHhhCCCCccccCcCccCCCCC------cCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHH
Q 012543 227 DSLAKFHREFPIPSFPIGPFHKYYPAS------ASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLA 300 (461)
Q Consensus 227 ~~~~~~~~~~~~~~~~vG~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 300 (461)
+..+.++.....++.+|||+....... +......++++.+||++++++++|||||||+...+.+.+.+++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~ 311 (482)
T PLN03007 232 AYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLE 311 (482)
T ss_pred HHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHH
Confidence 888888775556799999986432110 00011123558999999888999999999998888889999999999
Q ss_pred hCCCceEEEECCCccCCchhcccCchhHHHHhcCCC-ceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCc
Q 012543 301 NSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRG-HIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQP 379 (461)
Q Consensus 301 ~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P 379 (461)
.++++|||+++......+. ...+|+++.++..++. ++.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 312 ~~~~~flw~~~~~~~~~~~-~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 312 GSGQNFIWVVRKNENQGEK-EEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred HCCCCEEEEEecCCcccch-hhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc
Confidence 9999999999864211111 2358999988875444 5569999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHhhhceeec--------CC-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 012543 380 CHGEQMVIARYVSDVWKVGLHL--------ER-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQS 450 (461)
Q Consensus 380 ~~~DQ~~na~~v~~~lG~G~~l--------~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 450 (461)
+++||+.||+++++.+++|+.+ +. .++.++|.++|+++|.|+++..||+||+++++.+++++.+||+++++
T Consensus 391 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 391 VGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred chhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999887545666554 23 57999999999999998556799999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 012543 451 LENLISYILSY 461 (461)
Q Consensus 451 ~~~l~~~l~~~ 461 (461)
+++|++.+.++
T Consensus 471 l~~~v~~~~~~ 481 (482)
T PLN03007 471 LNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4e-59 Score=464.40 Aligned_cols=434 Identities=28% Similarity=0.446 Sum_probs=324.3
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C---CC--CCCceEEEcCCCCCCCcCCc
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKG--FSITIIHTKFNSPN-------P---SN--YPHFTFCSIQDGLSETEAST 79 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rG--h~V~~~~~~~~~~~-------~---~~--~~~~~~~~~~~~~~~~~~~~ 79 (461)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+... . .. .++++++.+|++.+.....
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~- 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTED- 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccc-
Confidence 46999999999999999999999999998 88999999855321 0 00 2369999998765421111
Q ss_pred ccHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCc-cEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhh
Q 012543 80 TDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPI-ACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPV 158 (461)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-Dlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 158 (461)
. .+..+...+...+.+.++++...... ...+| +|||+|.++.|+..+|+++|||++.++++++.....+.+.+.
T Consensus 81 ---~-~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 81 ---P-TFQSYIDNQKPKVRDAVAKLVDDSST-PSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred ---h-HHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1 22223334455566666666432100 00234 899999999999999999999999999999998888776554
Q ss_pred hhhcCCCCCCC--CCCCcccCCCCC-CCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhh
Q 012543 159 LSQKGYFPIQD--SHDLEAPVPELP-PLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHRE 235 (461)
Q Consensus 159 ~~~~~~~p~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 235 (461)
.....-.+... .....-.+++++ .++..+++..... ......+.........++.+++||+.++|......+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~ 233 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGS 233 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhc
Confidence 32211011110 011111256653 5666666633211 122333344455667788999999999999887777642
Q ss_pred --CCCCccccCcCcc-CCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECC
Q 012543 236 --FPIPSFPIGPFHK-YYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRP 312 (461)
Q Consensus 236 --~~~~~~~vG~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 312 (461)
..++++.|||+.. .... .....+.++++.+||++++++++|||||||....+.+++.+++.+++.++++|||++..
T Consensus 234 ~~~~~~v~~vGpl~~~~~~~-~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~ 312 (481)
T PLN02554 234 SGDLPPVYPVGPVLHLENSG-DDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRR 312 (481)
T ss_pred ccCCCCEEEeCCCccccccc-cccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 2356999999943 3221 00001223469999999888899999999998889999999999999999999999975
Q ss_pred Ccc------CC--chhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchh
Q 012543 313 GLV------RG--AEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQ 384 (461)
Q Consensus 313 ~~~------~~--~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ 384 (461)
... .+ ......+|+++.++.++|+++++|+||.+||.|+++++||||||+||+.||+++|||||++|+++||
T Consensus 313 ~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ 392 (481)
T PLN02554 313 ASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQ 392 (481)
T ss_pred CcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccc
Confidence 310 00 0001236999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhH-HHHHHhhhceeecC-----------C-ccCHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 012543 385 MVIA-RYVSDVWKVGLHLE-----------R-KLERGEVERAIRRVMV-DAEGREMRNRAAILKEKLDLCTKQGSSSYQS 450 (461)
Q Consensus 385 ~~na-~~v~~~lG~G~~l~-----------~-~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 450 (461)
+.|| +++++ +|+|+.+. . .++.++|.++|+++|+ | +.||+||+++++.+++++.+||+++++
T Consensus 393 ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss~~~ 468 (481)
T PLN02554 393 KFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSSHTA 468 (481)
T ss_pred hhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 9999 55777 79999984 1 5799999999999997 6 799999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 012543 451 LENLISYILS 460 (461)
Q Consensus 451 ~~~l~~~l~~ 460 (461)
+++|++.|.+
T Consensus 469 l~~lv~~~~~ 478 (481)
T PLN02554 469 LKKFIQDVTK 478 (481)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8.1e-59 Score=460.34 Aligned_cols=434 Identities=31% Similarity=0.445 Sum_probs=327.1
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCCCCC----C--------CCCCCCceEEEcCCCCCCCcC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKG----FSITIIHTKFNSP----N--------PSNYPHFTFCSIQDGLSETEA 77 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rG----h~V~~~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~~ 77 (461)
|.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. . .....++++..+|++.....
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~- 81 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD- 81 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc-
Confidence 56999999999999999999999999997 7999999874321 0 00012589999986532211
Q ss_pred CcccHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhh
Q 012543 78 STTDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALP 157 (461)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 157 (461)
..+...++..+.+.+.+.+++.++.+ . .++++||+|.+..|+..+|+++|||++.++++++.....+.+.+
T Consensus 82 -~e~~~~~~~~~~~~~~~~l~~~L~~l----~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 152 (480)
T PLN00164 82 -AAGVEEFISRYIQLHAPHVRAAIAGL----S----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLP 152 (480)
T ss_pred -cccHHHHHHHHHHhhhHHHHHHHHhc----C----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhh
Confidence 11233334434444555555544443 1 34699999999999999999999999999999998888776654
Q ss_pred hhhhcCCCCCCCCCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhC-
Q 012543 158 VLSQKGYFPIQDSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREF- 236 (461)
Q Consensus 158 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~- 236 (461)
......-.+.... ...-.+++++.++..+++.............+....+....++.+++||+.+||...++++....
T Consensus 153 ~~~~~~~~~~~~~-~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 153 ALDEEVAVEFEEM-EGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred hhcccccCccccc-CcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 3211100011110 00112677777777777743322221222333333455677889999999999999998887642
Q ss_pred -----CCCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEEC
Q 012543 237 -----PIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVR 311 (461)
Q Consensus 237 -----~~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 311 (461)
.+++..|||+...... ....+.++++.+||++++.+++|||||||....+.+++.+++.+|+.++++|||++.
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~ 309 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLR 309 (480)
T ss_pred cccCCCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1469999999743211 011234567999999988899999999999888899999999999999999999998
Q ss_pred CCccCC------chhcccCchhHHHHhcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchh
Q 012543 312 PGLVRG------AEWIELLPRGFLEMLDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQ 384 (461)
Q Consensus 312 ~~~~~~------~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ 384 (461)
.....+ .+....+|+++.++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 310 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ 389 (480)
T PLN00164 310 GPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQ 389 (480)
T ss_pred CCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccc
Confidence 542100 0111248899999988888877 999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhceeecCC------ccCHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012543 385 MVIARYVSDVWKVGLHLER------KLERGEVERAIRRVMVDA--EGREMRNRAAILKEKLDLCTKQGSSSYQSLENLIS 456 (461)
Q Consensus 385 ~~na~~v~~~lG~G~~l~~------~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 456 (461)
+.||+++.+.||+|+.+.. .++.++|.++|+++|.|+ ++..+|++|++|++++++++.+|||+++.+++|++
T Consensus 390 ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~ 469 (480)
T PLN00164 390 HLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAR 469 (480)
T ss_pred hhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999877543799999852 369999999999999863 36889999999999999999999999999999999
Q ss_pred HHHc
Q 012543 457 YILS 460 (461)
Q Consensus 457 ~l~~ 460 (461)
.+.+
T Consensus 470 ~~~~ 473 (480)
T PLN00164 470 EIRH 473 (480)
T ss_pred HHHh
Confidence 9864
No 14
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=5.6e-59 Score=455.64 Aligned_cols=419 Identities=22% Similarity=0.353 Sum_probs=308.9
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEEc--C--CCCCCCcCCcccHHH
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSN----YPHFTFCSI--Q--DGLSETEASTTDFVA 84 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~----~~~~~~~~~--~--~~~~~~~~~~~~~~~ 84 (461)
.+.||+++|++++||++|++.||+.|+++||+|||++++.+...... ..++++..+ + ++++++.....++..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 35799999999999999999999999999999999998754332211 124455544 3 466655433323322
Q ss_pred HHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCC
Q 012543 85 LISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGY 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 164 (461)
....+.......+.+.++++++. .++|+||+| ++.|+..+|+++|||++.++++++.... +.+.+. ..
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~ 150 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GK 150 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cc
Confidence 22222112222344445555443 568999999 5789999999999999999999887654 332211 00
Q ss_pred CCCCCCCCCcccCCCCCC----CCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCc
Q 012543 165 FPIQDSHDLEAPVPELPP----LRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPS 240 (461)
Q Consensus 165 ~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 240 (461)
.. ..+++++. ++..+++... .....+.............++.+++||+.+||...++++...+.+++
T Consensus 151 ~~--------~~~pglp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v 221 (442)
T PLN02208 151 LG--------VPPPGYPSSKVLFRENDAHALA-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKV 221 (442)
T ss_pred cC--------CCCCCCCCcccccCHHHcCccc-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCE
Confidence 00 11244432 2333443211 11111222222233455678899999999999999999887666789
Q ss_pred cccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchh
Q 012543 241 FPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEW 320 (461)
Q Consensus 241 ~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 320 (461)
..|||+...... ...+ ++++.+||+.++++++|||||||....+.+.+.+++.+++..+.+++|++..+......
T Consensus 222 ~~vGpl~~~~~~--~~~~--~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~- 296 (442)
T PLN02208 222 LLTGPMFPEPDT--SKPL--EEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTV- 296 (442)
T ss_pred EEEeecccCcCC--CCCC--HHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccch-
Confidence 999999865331 0122 34599999998888999999999998888989998888888888999998754211111
Q ss_pred cccCchhHHHHhcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhcee
Q 012543 321 IELLPRGFLEMLDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGL 399 (461)
Q Consensus 321 ~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 399 (461)
...+|+++.++.+++..++ +|+||.+||.|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|+
T Consensus 297 ~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv 376 (442)
T PLN02208 297 QEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSV 376 (442)
T ss_pred hhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeE
Confidence 2458999999987666655 999999999999999999999999999999999999999999999999998766479999
Q ss_pred ecCC-c---cCHHHHHHHHHHHhcch-h-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 400 HLER-K---LERGEVERAIRRVMVDA-E-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 400 ~l~~-~---~~~~~l~~~i~~ll~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
.++. + ++.++|.++|+++|+++ + |+.+|++++++++.+. ++||+++.+++|++.+.++
T Consensus 377 ~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 377 EVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred EeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 9976 3 89999999999999874 2 7789999999999986 6899999999999999764
No 15
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=8e-59 Score=454.20 Aligned_cols=425 Identities=28% Similarity=0.448 Sum_probs=327.4
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCCC-CC-C---CCCCCceEEEcCCCCCCCcC-CcccHHHHH
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYS-KGFSITIIHTKFNS-PN-P---SNYPHFTFCSIQDGLSETEA-STTDFVALI 86 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~-rGh~V~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 86 (461)
+.||+++|++++||++|++.||+.|+. +|+.|||++++.+. +. . ....+++++.++++++++.. ...+....+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~~ 82 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRL 82 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHHH
Confidence 459999999999999999999999996 69999999997432 11 1 11236999999988877642 233455556
Q ss_pred HHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCC
Q 012543 87 SVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFP 166 (461)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 166 (461)
..+.+.+...+.+.++.+... + .++++||+|.+..|+..+|+++|||++.++++++...+.+...+...
T Consensus 83 ~~~~~~~~~~l~~~l~~l~~~-~----~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------ 151 (455)
T PLN02152 83 VNFERNGDKALSDFIEANLNG-D----SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------ 151 (455)
T ss_pred HHHHHhccHHHHHHHHHhhcc-C----CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------
Confidence 666667777788877776432 1 33599999999999999999999999999999998888775533110
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCccccc--hhhhHHHHHHHHHHhcc--CccEEEEcChhHhhHHHHHHHHhhCCCCccc
Q 012543 167 IQDSHDLEAPVPELPPLRMKDIPVIETL--YQETLHQFAAEAINQMK--ASSGCIWNSVQELEQDSLAKFHREFPIPSFP 242 (461)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (461)
.....+++++.++..+++..... ....+.+.+....+... .++.+++||+.+||...++++.. .++..
T Consensus 152 -----~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~ 223 (455)
T PLN02152 152 -----NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVA 223 (455)
T ss_pred -----CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEE
Confidence 00123566666777777643311 11222333333333332 24689999999999998887754 37999
Q ss_pred cCcCccCCC---CC-cC-CC-ccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccC
Q 012543 243 IGPFHKYYP---AS-AS-SL-LSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVR 316 (461)
Q Consensus 243 vG~~~~~~~---~~-~~-~~-~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 316 (461)
|||+..... .. +. .. .+.+.++.+||++++.+++|||||||....+.+++.+++.+|+.++++|||++......
T Consensus 224 VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~ 303 (455)
T PLN02152 224 VGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNR 303 (455)
T ss_pred EcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 999975321 10 00 01 12344699999998888999999999999999999999999999999999999753110
Q ss_pred -----Cch-hcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHH
Q 012543 317 -----GAE-WIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARY 390 (461)
Q Consensus 317 -----~~~-~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 390 (461)
... ....+|+++.++.++|+++.+|+||.+||+|+++++||||||+||+.||+++|||+|++|+++||+.||++
T Consensus 304 ~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 383 (455)
T PLN02152 304 EAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKL 383 (455)
T ss_pred ccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHH
Confidence 000 00125789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceeecC--C--ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 391 VSDVWKVGLHLE--R--KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 391 v~~~lG~G~~l~--~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
+++.||+|+.+. . .++.++|.++|+++|+| ++..||+||++|+++.+++..+||++++++++|++.|
T Consensus 384 ~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 384 LEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 998567777764 2 46999999999999976 2356999999999999999999999999999999986
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=7.6e-59 Score=452.03 Aligned_cols=419 Identities=22% Similarity=0.333 Sum_probs=314.9
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----C--CCceEEEcC--CCCCCCcCCcccHH-
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSN----Y--PHFTFCSIQ--DGLSETEASTTDFV- 83 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~----~--~~~~~~~~~--~~~~~~~~~~~~~~- 83 (461)
-++||+++|++++||++|++.||+.|+.+|+.|||++++.+...... . ..+.+.++| ++++++.....+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~ 83 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPV 83 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCCh
Confidence 35799999999999999999999999999999999999865432111 1 127777787 67776533222221
Q ss_pred HHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcC
Q 012543 84 ALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKG 163 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (461)
.....+..... .+...++++++. .+||+||+|. ..|+..+|+++|||++.++++++.....+.. + ..
T Consensus 84 ~~~~~~~~a~~-~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~ 150 (453)
T PLN02764 84 TSADLLMSAMD-LTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GG 150 (453)
T ss_pred hHHHHHHHHHH-HhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cc
Confidence 11222222221 233344444432 4589999995 8899999999999999999998877776642 1 11
Q ss_pred CCCCCCCCCCcccCCCCC----CCCCCCCCcccc----chhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhh
Q 012543 164 YFPIQDSHDLEAPVPELP----PLRMKDIPVIET----LYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHRE 235 (461)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 235 (461)
.++ ..+++++ .++.++++.... ...................++.+++||+.+||...++++...
T Consensus 151 ~~~--------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 151 ELG--------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred cCC--------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 100 0113333 133333332110 011122333444435566788999999999999999998774
Q ss_pred CCCCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCcc
Q 012543 236 FPIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLV 315 (461)
Q Consensus 236 ~~~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 315 (461)
.+++++.|||+...... .-..++++.+|||+++++++|||||||....+.+++.+++.+|+..+.+|+|++..+..
T Consensus 223 ~~~~v~~VGPL~~~~~~----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~ 298 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDK----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRG 298 (453)
T ss_pred cCCcEEEeccCccCccc----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 44679999999754311 01123469999999999999999999999899999999999999999999999985321
Q ss_pred CCchhcccCchhHHHHhcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHh
Q 012543 316 RGAEWIELLPRGFLEMLDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDV 394 (461)
Q Consensus 316 ~~~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 394 (461)
.... ...+|+++.++.++++.++ +|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.
T Consensus 299 ~~~~-~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~ 377 (453)
T PLN02764 299 SSTI-QEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE 377 (453)
T ss_pred Ccch-hhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 1111 2459999999998888777 9999999999999999999999999999999999999999999999999999644
Q ss_pred hhceeecCC----ccCHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 395 WKVGLHLER----KLERGEVERAIRRVMVDA--EGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 395 lG~G~~l~~----~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
+|+|+.+.. .++.++|.++|+++|+++ ++..+|++++++++.++ ++||+++.+++|++.+.++
T Consensus 378 ~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 378 LKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQDL 446 (453)
T ss_pred hceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHh
Confidence 799998743 489999999999999873 37789999999999997 8999999999999999864
No 17
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7e-59 Score=458.13 Aligned_cols=439 Identities=28% Similarity=0.481 Sum_probs=318.8
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC------C--CCCceEEEcC-----CCCCCCcCCc
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPS------N--YPHFTFCSIQ-----DGLSETEAST 79 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~------~--~~~~~~~~~~-----~~~~~~~~~~ 79 (461)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... . ...++++.+| ++++++....
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 4569999999999999999999999999999999999986542111 1 1138888887 5777654332
Q ss_pred ccHH--HHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhh
Q 012543 80 TDFV--ALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALP 157 (461)
Q Consensus 80 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 157 (461)
.+.. .+...+..... .+.+.++++++... .+|++||+|.++.|+..+|+++|||++.+++++++....+..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~-~l~~~l~~lL~~~~----~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVD-KLQQPLERFLEQAK----PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred ccCCcHHHHHHHHHHHH-HhHHHHHHHHHhcC----CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 2211 22222222221 23344444444322 46899999999999999999999999999999887776543321
Q ss_pred hhhhcCCCCCCCCCCCcccCCCCCC---CCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHh
Q 012543 158 VLSQKGYFPIQDSHDLEAPVPELPP---LRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHR 234 (461)
Q Consensus 158 ~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 234 (461)
...+ ..+... ......+++++. ++..+++...... .....+...+.+....++.+++||+.+||...++++..
T Consensus 162 ~~~~--~~~~~~-~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 162 LHNA--HLSVSS-DSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred Hhcc--cccCCC-CCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 1111 111111 111122455542 4555555322111 11122222222223456689999999999999999987
Q ss_pred hCCCCccccCcCccCCCCC------cCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEE
Q 012543 235 EFPIPSFPIGPFHKYYPAS------ASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLW 308 (461)
Q Consensus 235 ~~~~~~~~vG~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 308 (461)
.+++++..|||+....... +......++++.+||++++++++|||||||......+++.+++.+|+.++++|||
T Consensus 238 ~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW 317 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIW 317 (491)
T ss_pred hcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 6667899999997432110 0000012345899999998899999999999999999999999999999999999
Q ss_pred EECCCccCCchhcccCchhHHHHhcCCC-ceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhh
Q 012543 309 VVRPGLVRGAEWIELLPRGFLEMLDGRG-HIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVI 387 (461)
Q Consensus 309 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 387 (461)
++..+..........+|+++.++..++. ++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.|
T Consensus 318 ~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~n 397 (491)
T PLN02534 318 VIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLN 397 (491)
T ss_pred EEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHH
Confidence 9984311100000136889987765444 456999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhceeecCC--------------ccCHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 012543 388 ARYVSDVWKVGLHLER--------------KLERGEVERAIRRVMV--DAEGREMRNRAAILKEKLDLCTKQGSSSYQSL 451 (461)
Q Consensus 388 a~~v~~~lG~G~~l~~--------------~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 451 (461)
|+++++.||+|+.+.. .++.++|.++|+++|. +++|..+|+||++|+++.++++.+|||+.+.+
T Consensus 398 a~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl 477 (491)
T PLN02534 398 EKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINL 477 (491)
T ss_pred HHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999877999998730 2689999999999997 33478999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 012543 452 ENLISYILS 460 (461)
Q Consensus 452 ~~l~~~l~~ 460 (461)
++|++.|.+
T Consensus 478 ~~fv~~i~~ 486 (491)
T PLN02534 478 SILIQDVLK 486 (491)
T ss_pred HHHHHHHHH
Confidence 999999864
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=7.3e-59 Score=453.99 Aligned_cols=424 Identities=27% Similarity=0.446 Sum_probs=316.1
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCCCCCC--------CCCCCCceEEEcCCCCCCCc--CCc
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKG--FSITI--IHTKFNSPN--------PSNYPHFTFCSIQDGLSETE--AST 79 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rG--h~V~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~ 79 (461)
+.||+++|++++||++|++.||+.|+.+| +.||+ ..++.+... ....++++++.+|++.+... ...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 45555 444332111 01124699999987653211 111
Q ss_pred ccHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhh
Q 012543 80 TDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVL 159 (461)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 159 (461)
.+....+..+...+...+.+.+.++... ..+++||+|.+..|+..+|+++|||++.++++++.....+.+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSRN------FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCCC------CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 2223333334445566666666655221 2359999999999999999999999999999999888887664432
Q ss_pred hhcCCCCCCCCCC-CcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCC-
Q 012543 160 SQKGYFPIQDSHD-LEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFP- 237 (461)
Q Consensus 160 ~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~- 237 (461)
... .+.....+ ....+++++.++..+++...........+.+.........++.+++||+.+||...++++.+.+.
T Consensus 157 ~~~--~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~ 234 (451)
T PLN03004 157 DET--TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCF 234 (451)
T ss_pred ccc--ccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCC
Confidence 111 01000001 11235777777778877543222222334444444556678899999999999999999877543
Q ss_pred CCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCC
Q 012543 238 IPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRG 317 (461)
Q Consensus 238 ~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 317 (461)
+++..|||+...... .......+.++.+||++++++++|||||||....+.+++.+++.+|+.++++|||++.......
T Consensus 235 ~~v~~vGPl~~~~~~-~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~ 313 (451)
T PLN03004 235 RNIYPIGPLIVNGRI-EDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELE 313 (451)
T ss_pred CCEEEEeeeccCccc-cccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccc
Confidence 579999999743221 0001122345899999988899999999999989999999999999999999999998531000
Q ss_pred c--hhcc-cCchhHHHHhcCCCc-eeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHH
Q 012543 318 A--EWIE-LLPRGFLEMLDGRGH-IVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSD 393 (461)
Q Consensus 318 ~--~~~~-~lp~~~~~~~~~~~~-~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 393 (461)
. .... .+|++++++.+++.. +.+|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||+++++
T Consensus 314 ~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~ 393 (451)
T PLN03004 314 KTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVD 393 (451)
T ss_pred ccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHH
Confidence 0 0022 289999999887665 55999999999999999999999999999999999999999999999999999976
Q ss_pred hhhceeecCC----ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 012543 394 VWKVGLHLER----KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQ 449 (461)
Q Consensus 394 ~lG~G~~l~~----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 449 (461)
.||+|+.++. .++.++|.++|+++|+| ++||+++++++++.++++.+|||+++
T Consensus 394 ~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 394 EIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4799999964 46999999999999998 89999999999999999999999875
No 19
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.6e-58 Score=448.58 Aligned_cols=432 Identities=25% Similarity=0.392 Sum_probs=322.9
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC-----CC----CCCceEEEcCCCCCCCcCCc-ccH
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSK-GFSITIIHTKFNSPNP-----SN----YPHFTFCSIQDGLSETEAST-TDF 82 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~-~~~ 82 (461)
+.||+++|+|++||++|++.||+.|+.+ |..|||+++..+.... .. ..++++..+|....++.... .+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 4599999999999999999999999987 9999999876433211 11 12588999985332221011 123
Q ss_pred HHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCC-eEEEecccHHHHHHHhhhhhhhh
Q 012543 83 VALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLP-RIVLRSLSVSSSLVYAALPVLSQ 161 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~ 161 (461)
...+..+.+.+...+++.++.+. .+|+|||+|.+..|+..+|+++||| .+.+.++++.....+.+.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~--------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~ 154 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMK--------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT 154 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcC--------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc
Confidence 22233333445555555554432 3589999999999999999999999 57787887776656555443221
Q ss_pred cCCCCCCCCCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhC-----
Q 012543 162 KGYFPIQDSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREF----- 236 (461)
Q Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----- 236 (461)
..-........ .-.+++++.++..+++.............+.........++.+++||+.+||...++.+...+
T Consensus 155 ~~~~~~~~~~~-~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~ 233 (470)
T PLN03015 155 VVEGEYVDIKE-PLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRV 233 (470)
T ss_pred ccccccCCCCC-eeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccc
Confidence 10000000011 123677777888887743311111112222234445778999999999999999998887642
Q ss_pred -CCCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCcc
Q 012543 237 -PIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLV 315 (461)
Q Consensus 237 -~~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 315 (461)
.+|++.|||+..... ....++++.+||++++++++|||||||....+.+++.+++.+|+.++++|||++.....
T Consensus 234 ~~~~v~~VGPl~~~~~-----~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~ 308 (470)
T PLN03015 234 MKVPVYPIGPIVRTNV-----HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPAS 308 (470)
T ss_pred cCCceEEecCCCCCcc-----cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcc
Confidence 256999999984321 11123469999999888999999999999999999999999999999999999974211
Q ss_pred -------CCchhcccCchhHHHHhcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhh
Q 012543 316 -------RGAEWIELLPRGFLEMLDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVI 387 (461)
Q Consensus 316 -------~~~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 387 (461)
..++..+.+|+++.++.++++.++ +|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.|
T Consensus 309 ~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~n 388 (470)
T PLN03015 309 YLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMN 388 (470)
T ss_pred ccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHH
Confidence 000112358999999999998765 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhceeecC----C-ccCHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 388 ARYVSDVWKVGLHLE----R-KLERGEVERAIRRVMVD--AEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 388 a~~v~~~lG~G~~l~----~-~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
|+++++.||+|+.+. . .++.++|.++|+++|.+ ++|..+|+||++|+++.++++.+|||+++.++++++++.
T Consensus 389 a~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 389 ATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 999955589999995 2 58999999999999963 347899999999999999999999999999999998863
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.7e-58 Score=451.33 Aligned_cols=417 Identities=22% Similarity=0.324 Sum_probs=308.4
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEEc--C--CCCCCCcCCcccHHH
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPS----NYPHFTFCSI--Q--DGLSETEASTTDFVA 84 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 84 (461)
++.||+++|++++||++|++.||+.|+++|++|||++++.+..... ...++.+..+ | ++++++.....++..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 4679999999999999999999999999999999999975533221 1124777544 3 567665433222221
Q ss_pred H-HHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcC
Q 012543 85 L-ISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKG 163 (461)
Q Consensus 85 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (461)
. ...+.+. ...+.+.++.+++. .+||+||+|. +.|+..+|+++|||++.++++++.....+.+ +. ....
T Consensus 83 ~~~~~~~~a-~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~-~~~~ 152 (446)
T PLN00414 83 STKKPIFDA-MDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR-AELG 152 (446)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH-hhcC
Confidence 1 1122222 22344455555443 5689999995 8899999999999999999998887776654 11 0000
Q ss_pred CCCCCCCCCCcccCCCCCC----CCCCCCC--ccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCC
Q 012543 164 YFPIQDSHDLEAPVPELPP----LRMKDIP--VIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFP 237 (461)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 237 (461)
. .+++++. ++..+.. ... . .....+....+....++.+++||+.+||...+++....++
T Consensus 153 ~-----------~~pg~p~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 217 (446)
T PLN00414 153 F-----------PPPDYPLSKVALRGHDANVCSLF-A---NSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQ 217 (446)
T ss_pred C-----------CCCCCCCCcCcCchhhcccchhh-c---ccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcC
Confidence 0 1122221 1111111 101 0 0112333334556678899999999999999998877555
Q ss_pred CCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCC
Q 012543 238 IPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRG 317 (461)
Q Consensus 238 ~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 317 (461)
++++.|||+...... ......++++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|++......+
T Consensus 218 ~~v~~VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~ 295 (446)
T PLN00414 218 RKVLLTGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS 295 (446)
T ss_pred CCeEEEcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc
Confidence 679999999753321 001112345889999999999999999999999999999999999999999999997632111
Q ss_pred chhcccCchhHHHHhcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhh
Q 012543 318 AEWIELLPRGFLEMLDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWK 396 (461)
Q Consensus 318 ~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG 396 (461)
.. .+.+|+++.++.++++.++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|
T Consensus 296 ~~-~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g 374 (446)
T PLN00414 296 TV-QEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELE 374 (446)
T ss_pred cc-hhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhC
Confidence 11 2359999999999999877 999999999999999999999999999999999999999999999999999964479
Q ss_pred ceeecCC----ccCHHHHHHHHHHHhcch-h-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 397 VGLHLER----KLERGEVERAIRRVMVDA-E-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 397 ~G~~l~~----~~~~~~l~~~i~~ll~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
+|+.+.. .++.++|.++++++|.|+ + +..+|++++++++.+. +.||+...+++|++.++++
T Consensus 375 ~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~----~~gg~ss~l~~~v~~~~~~ 441 (446)
T PLN00414 375 VSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV----SPGLLSGYADKFVEALENE 441 (446)
T ss_pred eEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHh
Confidence 9999964 389999999999999863 2 6789999999999975 5555445599999998753
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.3e-58 Score=454.26 Aligned_cols=442 Identities=26% Similarity=0.382 Sum_probs=321.8
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCCCCC---------CCCCCCCceEEEcCCCCCC-CcCC-
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGF---SITIIHTKFNSP---------NPSNYPHFTFCSIQDGLSE-TEAS- 78 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh---~V~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~- 78 (461)
++.||+++|++++||++|++.||+.|+.+|. .||++.+..+.. .....++++|+.+|++... ....
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 4669999999999999999999999999983 567766542211 0111246999999865321 1110
Q ss_pred cccHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhh
Q 012543 79 TTDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPV 158 (461)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 158 (461)
.......+..+...+...+++.++++..........+++|||+|.+..|+..+|+++|||++.++++++.....+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 11121233334445556666766665432100000135999999999999999999999999999999988777665443
Q ss_pred hhhcCCCCCCC-CCCCcccCCCCC-CCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhC
Q 012543 159 LSQKGYFPIQD-SHDLEAPVPELP-PLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREF 236 (461)
Q Consensus 159 ~~~~~~~p~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 236 (461)
........... .....-.+++++ .++..+++...... ...+.+....+....++.+++||+.+||...++++....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 239 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLP 239 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhc
Confidence 21110000000 001112356663 46666665322111 112233344455677889999999999999998886532
Q ss_pred C--CCccccCcCccCCCCCcCCCcc--CcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECC
Q 012543 237 P--IPSFPIGPFHKYYPASASSLLS--QDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRP 312 (461)
Q Consensus 237 ~--~~~~~vG~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 312 (461)
. +++++|||+....... ....+ .+.++.+||+.++.+++|||||||....+.+++.+++.+|+.++++|||+++.
T Consensus 240 ~~~p~v~~vGpl~~~~~~~-~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~ 318 (475)
T PLN02167 240 ENYPPVYPVGPILSLKDRT-SPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRT 318 (475)
T ss_pred ccCCeeEEecccccccccc-CCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 1 4699999998643210 01111 23569999999888899999999998888999999999999999999999875
Q ss_pred CccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHH-H
Q 012543 313 GLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARY-V 391 (461)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~-v 391 (461)
......+....+|+++.++.++++++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++ +
T Consensus 319 ~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~ 398 (475)
T PLN02167 319 NPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV 398 (475)
T ss_pred CcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 321100112358999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHhhhceeecCC--------ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 392 SDVWKVGLHLER--------KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 392 ~~~lG~G~~l~~--------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
+. +|+|+.+.. .++.++|.++|+++|.++ ..||+||+++++++++++.+|||+++.+++|++.|.+
T Consensus 399 ~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 399 KE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 66 799998842 369999999999999862 4899999999999999999999999999999999864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3e-50 Score=401.85 Aligned_cols=407 Identities=18% Similarity=0.171 Sum_probs=282.5
Q ss_pred eEEE-EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEcCCCCCCCc---CCc------c---c
Q 012543 16 RLIL-FPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS-PNPSNYPHFTFCSIQDGLSETE---AST------T---D 81 (461)
Q Consensus 16 ~il~-~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~------~---~ 81 (461)
||+. .|.++.+|+..+.+|+++|++|||+||++++.... ....+..+++.+.++...+... ... . +
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVVAD 101 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhhhh
Confidence 4664 48789999999999999999999999999884211 1111245677776641111000 000 0 0
Q ss_pred H----HHHHHHHHHHcchhHHH-HHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHc-CCCeEEEecccHHHHHHHhh
Q 012543 82 F----VALISVLHVKCAAPFQD-CLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESL-KLPRIVLRSLSVSSSLVYAA 155 (461)
Q Consensus 82 ~----~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~l-giP~v~~~~~~~~~~~~~~~ 155 (461)
. ......+...|...+.+ .+.++++.-+ .++|+||+|.+..|+..+|+.+ ++|.|.+++........ ..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~----~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~-~~ 176 (507)
T PHA03392 102 SSTVTADNYMGLVRMISDQFDLPNVKNLIANKN----NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF-ET 176 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC----CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH-Hh
Confidence 0 01112223455555544 4444443111 7799999999889999999999 99988887764433322 22
Q ss_pred hh-hhhhcCCCCCCCC-----CCCcccCCCCCCCCCCCCC-ccccchhhhH-HHHH----HHHHHhccCccEEEEcChhH
Q 012543 156 LP-VLSQKGYFPIQDS-----HDLEAPVPELPPLRMKDIP-VIETLYQETL-HQFA----AEAINQMKASSGCIWNSVQE 223 (461)
Q Consensus 156 ~~-~~~~~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~----~~~~~~~~~~~~~l~~~~~~ 223 (461)
.+ .+.+++|+|.... +.+.+++.++....+..+. .........+ .+.+ ..+.+...+.+.+++|+.+.
T Consensus 177 ~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~ 256 (507)
T PHA03392 177 MGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPV 256 (507)
T ss_pred hccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCcc
Confidence 33 5677777775432 3444444443210000000 0000111111 2221 12445556778999999999
Q ss_pred hhHHHHHHHHhhCCCCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEcccccc---CCHHHHHHHHHHHH
Q 012543 224 LEQDSLAKFHREFPIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAA---IDETKFLEVAWGLA 300 (461)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~a~~ 300 (461)
+|++ ..+++++++|||+..+... ..+.++++.+|+++. ++++|||||||... .+.++++.++++++
T Consensus 257 ~d~~------rp~~p~v~~vGgi~~~~~~----~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~ 325 (507)
T PHA03392 257 FDNN------RPVPPSVQYLGGLHLHKKP----PQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFK 325 (507)
T ss_pred ccCC------CCCCCCeeeecccccCCCC----CCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHH
Confidence 9975 3456779999999875321 123344599999875 45899999999864 56788999999999
Q ss_pred hCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcc
Q 012543 301 NSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC 380 (461)
Q Consensus 301 ~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 380 (461)
+.++++||+....... ..+|+|+ ++.+|+||.+||+|+.+++||||||+||++||+++|||+|++|+
T Consensus 326 ~l~~~viw~~~~~~~~-----~~~p~Nv--------~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~ 392 (507)
T PHA03392 326 KLPYNVLWKYDGEVEA-----INLPANV--------LTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPM 392 (507)
T ss_pred hCCCeEEEEECCCcCc-----ccCCCce--------EEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCC
Confidence 9999999998764310 1345554 99999999999999888889999999999999999999999999
Q ss_pred cchhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012543 381 HGEQMVIARYVSDVWKVGLHLER-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISY 457 (461)
Q Consensus 381 ~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 457 (461)
++||+.||+|+++ +|+|+.++. .++.++|.++|+++++| ++|++||+++++.+++ ++..+.++++.-+...
T Consensus 393 ~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~--~p~~~~~~av~~iE~v 464 (507)
T PHA03392 393 MGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRH--QPMTPLHKAIWYTEHV 464 (507)
T ss_pred CccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 9999999999999 599999998 89999999999999999 9999999999999994 1123566666555443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=6e-52 Score=421.38 Aligned_cols=380 Identities=27% Similarity=0.329 Sum_probs=228.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEEcCCCCCCCcC--Ccc------------
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNP-SNYPHFTFCSIQDGLSETEA--STT------------ 80 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~------------ 80 (461)
||+++|. ++||+.++..|+++|++|||+||++++....... ....++++..++...+.... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 7888874 8899999999999999999999999885321111 12345666666644332220 000
Q ss_pred --cHHHHH-------HHHHHHcchhHHH--HHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHH
Q 012543 81 --DFVALI-------SVLHVKCAAPFQD--CLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSS 149 (461)
Q Consensus 81 --~~~~~~-------~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~ 149 (461)
.....+ ......|...+.+ .++.+.+ .++|++|+|.+..|+..+|+.+++|.+.+.++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-------~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-------EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-------HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------hccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 011111 1111223222211 2222322 569999999988999999999999998865442221
Q ss_pred HHHHhhhhhhhhcCCCCCCCC-----CCCcccCCCCCC-C-----------CCCCCCccccchhhhHHHHHHHHHHhccC
Q 012543 150 SLVYAALPVLSQKGYFPIQDS-----HDLEAPVPELPP-L-----------RMKDIPVIETLYQETLHQFAAEAINQMKA 212 (461)
Q Consensus 150 ~~~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (461)
.......+.+.+++|+|.... +.+.+++.+... + ....+........ ....+...+
T Consensus 154 ~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 226 (500)
T PF00201_consen 154 DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP-------FSFRELLSN 226 (500)
T ss_dssp CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G-------GGCHHHHHH
T ss_pred hhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc-------cccHHHHHH
Confidence 111111133455566655331 233333333210 0 0000000000000 011222234
Q ss_pred ccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEcccccc-CCHHH
Q 012543 213 SSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAA-IDETK 291 (461)
Q Consensus 213 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~ 291 (461)
.+.+++|+.+.+++|.+ +.+++.++|++...++. ++|.+ +..|++...++++|||||||... .+.+.
T Consensus 227 ~~l~l~ns~~~ld~prp------~~p~v~~vGgl~~~~~~----~l~~~--~~~~~~~~~~~~vv~vsfGs~~~~~~~~~ 294 (500)
T PF00201_consen 227 ASLVLINSHPSLDFPRP------LLPNVVEVGGLHIKPAK----PLPEE--LWNFLDSSGKKGVVYVSFGSIVSSMPEEK 294 (500)
T ss_dssp HHHCCSSTEEE----HH------HHCTSTTGCGC-S--------TCHHH--HHHHTSTTTTTEEEEEE-TSSSTT-HHHH
T ss_pred HHHHhhhccccCcCCcc------hhhcccccCcccccccc----ccccc--cchhhhccCCCCEEEEecCcccchhHHHH
Confidence 45667788888887643 23569999999887665 55544 89999875678999999999876 44455
Q ss_pred HHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhc
Q 012543 292 FLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCE 371 (461)
Q Consensus 292 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~ 371 (461)
.+.++++++++++++||++.+.. ...+| .|+++.+|+||.+||.|+++++||||||+||+.||+++
T Consensus 295 ~~~~~~~~~~~~~~~iW~~~~~~------~~~l~--------~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~ 360 (500)
T PF00201_consen 295 LKEIAEAFENLPQRFIWKYEGEP------PENLP--------KNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYH 360 (500)
T ss_dssp HHHHHHHHHCSTTEEEEEETCSH------GCHHH--------TTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHC
T ss_pred HHHHHHHHhhCCCcccccccccc------ccccc--------ceEEEeccccchhhhhcccceeeeeccccchhhhhhhc
Confidence 88899999999999999998742 23344 44589999999999999999999999999999999999
Q ss_pred CCccccCcccchhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 012543 372 GVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLC 440 (461)
Q Consensus 372 GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~ 440 (461)
|||+|++|+++||+.||++++++ |+|+.++. .+|.++|.++|+++|+| ++|++||++++..+++.
T Consensus 361 gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 361 GVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp T--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT--
T ss_pred cCCccCCCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcC
Confidence 99999999999999999999995 99999998 99999999999999999 89999999999999853
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.4e-43 Score=346.24 Aligned_cols=380 Identities=16% Similarity=0.213 Sum_probs=256.2
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcC--C--cccHHHHHHHHHHHcchh
Q 012543 21 PLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEA--S--TTDFVALISVLHVKCAAP 96 (461)
Q Consensus 21 ~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~ 96 (461)
.+|++||++|+++||++|+++||+|+|++++..... ....|+.+.+++........ . ..+.......+...+...
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~-v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAER-VEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDV 80 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHH-HHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999744333 33468999999865433110 0 022233333333333333
Q ss_pred HHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCCCCccc
Q 012543 97 FQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSHDLEAP 176 (461)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 176 (461)
+.+..+.+.+ ++||+||+|.+++++..+|+.+|||+|.+++.+.... .++.+. .|... .+...
T Consensus 81 ~~~l~~~~~~-------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~----~~~~~--~~~~~ 143 (392)
T TIGR01426 81 LPQLEEAYKG-------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV----SPAGE--GSAEE 143 (392)
T ss_pred HHHHHHHhcC-------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc----cccch--hhhhh
Confidence 3333322222 7899999999888999999999999999865422110 001000 01110 00000
Q ss_pred CCCCCCCCCCCCCccccchhhhHHHHHH----HHHHh-ccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCCC
Q 012543 177 VPELPPLRMKDIPVIETLYQETLHQFAA----EAINQ-MKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYYP 251 (461)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~~ 251 (461)
. ....+.+.... .....+++-.. ..... ....+..+..+.+.++++ +.+++.+++++||+.....
T Consensus 144 ~----~~~~~~~~~~~-~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~~~~~~ 213 (392)
T TIGR01426 144 G----AIAERGLAEYV-ARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPCIGDRK 213 (392)
T ss_pred h----ccccchhHHHH-HHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeEEECCCCCCcc
Confidence 0 00000000000 00000111000 00111 112223455566666542 3456677999999875432
Q ss_pred CCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHH
Q 012543 252 ASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEM 331 (461)
Q Consensus 252 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 331 (461)
. ...|.....++++||||+||+......++..+++++.+.+.++||..+.+... +.+..++
T Consensus 214 ~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~--~~~~~~~------ 274 (392)
T TIGR01426 214 E-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP--ADLGELP------ 274 (392)
T ss_pred c-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh--hHhccCC------
Confidence 1 22366555678999999999866666688889999999999988887654210 0022233
Q ss_pred hcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-ccCHHHH
Q 012543 332 LDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLERGEV 410 (461)
Q Consensus 332 ~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l 410 (461)
+|+.+.+|+|+.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++++ +|+|+.+.. .+++++|
T Consensus 275 --~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~~~~~~~l 349 (392)
T TIGR01426 275 --PNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPEEVTAEKL 349 (392)
T ss_pred --CCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEeccccCCHHHH
Confidence 45588999999999999998 99999999999999999999999999999999999999 699999987 8899999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 411 ERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 411 ~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
.++|+++++| ++|+++++++++.+. ..++..++++.+.+.++
T Consensus 350 ~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 350 REAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhc
Confidence 9999999999 899999999999998 67788888888887764
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.5e-43 Score=348.78 Aligned_cols=374 Identities=18% Similarity=0.191 Sum_probs=244.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCC-----------cccHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEAS-----------TTDFV 83 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 83 (461)
|||+|++.|+.||++|+++||++|++|||+|+|++++.... .....|++|.++++........ .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~-~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFAD-LVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHH-HHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 69999999999999999999999999999999999963322 2334689999998543221100 01111
Q ss_pred HHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcC
Q 012543 84 ALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKG 163 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (461)
.....+...+...+.+.++.+.+ ++||+||+|.+.+++..+|+++|||+|.+++++......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~----------- 141 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARD-------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA----------- 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc-----------
Confidence 22233334444444444443332 889999999988889999999999999998774321110
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCccc--cchhhhHHHHHHHHHHhccC---------ccEEEEcChhHhhHHHHHHH
Q 012543 164 YFPIQDSHDLEAPVPELPPLRMKDIPVIE--TLYQETLHQFAAEAINQMKA---------SSGCIWNSVQELEQDSLAKF 232 (461)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~~~~~~~ 232 (461)
..+... .. ........ ......+..........+.. .+..+....+.+.+ .
T Consensus 142 ~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~-----~ 203 (401)
T cd03784 142 FPPPLG------------RA-NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLP-----P 203 (401)
T ss_pred CCCccc------------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCC-----C
Confidence 000000 00 00000000 00000111111111111110 11222222222221 1
Q ss_pred HhhCCCCccccC-cCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEcccccc-CCHHHHHHHHHHHHhCCCceEEEE
Q 012543 233 HREFPIPSFPIG-PFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAA-IDETKFLEVAWGLANSKVPFLWVV 310 (461)
Q Consensus 233 ~~~~~~~~~~vG-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~ 310 (461)
+.+++....++| ++...+. ....+.++..|++. ++++||||+||... ....++..++++++..+.++||..
T Consensus 204 ~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 276 (401)
T cd03784 204 PPDWPRFDLVTGYGFRDVPY-----NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSL 276 (401)
T ss_pred CCCccccCcEeCCCCCCCCC-----CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 233344466665 3332221 12234457788865 58899999999876 345677888999999899999888
Q ss_pred CCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHH
Q 012543 311 RPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARY 390 (461)
Q Consensus 311 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 390 (461)
+..... ...++ +|+++.+|+||.++|++|++ ||||||+||++||+++|||+|++|+..||+.||++
T Consensus 277 g~~~~~----~~~~~--------~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~ 342 (401)
T cd03784 277 GWGGLG----AEDLP--------DNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAAR 342 (401)
T ss_pred cCcccc----ccCCC--------CceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHH
Confidence 765311 01233 45589999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhhhceeecCC-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012543 391 VSDVWKVGLHLER-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLI 455 (461)
Q Consensus 391 v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 455 (461)
+++ +|+|+.+.. .++.++|.++|++++++ + ++++++++++.++ ..++..++++.+.
T Consensus 343 ~~~-~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~----~~~g~~~~~~~ie 399 (401)
T cd03784 343 VAE-LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIR----EEDGVPSAADVIE 399 (401)
T ss_pred HHH-CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHH----hccCHHHHHHHHh
Confidence 999 699999987 78999999999999998 4 5666777777776 5566666665543
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-42 Score=332.03 Aligned_cols=391 Identities=18% Similarity=0.199 Sum_probs=245.9
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCc--CCcccHHHHHHHHHH
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETE--ASTTDFVALISVLHV 91 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 91 (461)
+|||+++..|+.||++|+++|+++|.++||+|+|++++........ .|+.|..++....+.. ....+..+.+.....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeeccccCChhhhhhhhhhccchhHHHhh
Confidence 4799999999999999999999999999999999999744433332 4566777764311111 111111111111222
Q ss_pred HcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCC
Q 012543 92 KCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSH 171 (461)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (461)
.......+.++-+.+ ..||+++.|.....+ .+++..++|++.............. .+...+...+
T Consensus 80 ~~~~~~~~~~~~~~e-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-- 144 (406)
T COG1819 80 QFKKLIRELLELLRE-------LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG-----LPLPPVGIAG-- 144 (406)
T ss_pred hhhhhhHHHHHHHHh-------cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc-----cCcccccccc--
Confidence 222333444444544 779999999655444 8999999999986554222111110 0000011000
Q ss_pred CCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhcc---CccEEEEcChhHhhHHHHHHHH---hhCCCCccccCc
Q 012543 172 DLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMK---ASSGCIWNSVQELEQDSLAKFH---REFPIPSFPIGP 245 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~l~~~~~~~~~---~~~~~~~~~vG~ 245 (461)
........++....+-... ... .......+...... ....-+..+.+.++..+.+... ..++....++||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 220 (406)
T COG1819 145 KLPIPLYPLPPRLVRPLIF---ARS-WLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGP 220 (406)
T ss_pred cccccccccChhhcccccc---chh-hhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCcccc
Confidence 0000001011000000000 000 00000000000000 0000011111112111111000 111223677777
Q ss_pred CccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCc
Q 012543 246 FHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLP 325 (461)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp 325 (461)
+...... +...|. ..++++||+|+||.... .+++..+++++..++.++|+.... ... ....+|
T Consensus 221 ~~~~~~~----------~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~---~~~~~p 283 (406)
T COG1819 221 LLGEAAN----------ELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARD---TLVNVP 283 (406)
T ss_pred ccccccc----------cCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-ccc---ccccCC
Confidence 7655442 123343 33699999999999876 888999999999999999888765 211 135567
Q ss_pred hhHHHHhcCCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-c
Q 012543 326 RGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-K 404 (461)
Q Consensus 326 ~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~ 404 (461)
.|+ ++.+|+||.++|+++++ ||||||+||+.|||++|||+|++|...||+.||.|+++ +|+|+.+.. .
T Consensus 284 ~n~--------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~~ 352 (406)
T COG1819 284 DNV--------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFEE 352 (406)
T ss_pred Cce--------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCccc
Confidence 666 89999999999999999 99999999999999999999999999999999999999 699999998 8
Q ss_pred cCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 405 LERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 405 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
++.+.|+++|+++|+| +.|+++++++++.++ +.++...+.+.|.+.++
T Consensus 353 l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~----~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 353 LTEERLRAAVNEVLAD---DSYRRAAERLAEEFK----EEDGPAKAADLLEEFAR 400 (406)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHh
Confidence 9999999999999999 999999999999999 66676667776666554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.6e-38 Score=323.04 Aligned_cols=393 Identities=32% Similarity=0.445 Sum_probs=251.6
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCC----------ceEEEcCCCCCCCcCCc-ccH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSN-YPH----------FTFCSIQDGLSETEAST-TDF 82 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~-~~~ 82 (461)
.+++++++|++||++|+..+|+.|+++||+||++++......... ... +.+...+++++...... ...
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLDI 85 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHHH
Confidence 477888888999999999999999999999999998644332221 111 11111111222221111 011
Q ss_pred HHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcC-CCeEEEecccHHHHHHHhhhhhhhh
Q 012543 83 VALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLK-LPRIVLRSLSVSSSLVYAALPVLSQ 161 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~ 161 (461)
......+...|...+++....+..... .++|++|+|.+..+...++.... ++...+............ +.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~----~~~ 157 (496)
T KOG1192|consen 86 SESLLELNKTCEDLLRDPLEKLLLLKS----EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGL----PSP 157 (496)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhhc----CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCC----cCc
Confidence 122455556676667765555444322 44999999987666766776664 887777766554433322 223
Q ss_pred cCCCCCCCC------CCCcccCCCCCCCCCCCCCccccc-----hhhhHH-HHH-------HHHHHhccCccEEEEcChh
Q 012543 162 KGYFPIQDS------HDLEAPVPELPPLRMKDIPVIETL-----YQETLH-QFA-------AEAINQMKASSGCIWNSVQ 222 (461)
Q Consensus 162 ~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~-------~~~~~~~~~~~~~l~~~~~ 222 (461)
..++|.... ..+..+..++. ...++..... ...... ... ........+.+..++|+.+
T Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~ 234 (496)
T KOG1192|consen 158 LSYVPSPFSLSSGDDMSFPERVPNLI---KKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNP 234 (496)
T ss_pred ccccCcccCccccccCcHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCc
Confidence 334443321 01111111000 0000000000 000000 000 1122334455566677766
Q ss_pred HhhHHHHHHHHhhCCCCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCC--eEEEEEccccc---cCCHHHHHHHHH
Q 012543 223 ELEQDSLAKFHREFPIPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPK--SVIYVSFGSIA---AIDETKFLEVAW 297 (461)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~ 297 (461)
.++.. +....+++.+|||+...... .... ...+|++..+.. ++|||||||.. ..+.+....++.
T Consensus 235 ~~~~~-----~~~~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~ 303 (496)
T KOG1192|consen 235 LLDFE-----PRPLLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAK 303 (496)
T ss_pred ccCCC-----CCCCCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHH
Confidence 65541 11124569999999987433 1111 135566655444 99999999998 689999999999
Q ss_pred HHHhC-CCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhh-hcCCCCCccccccCchHHHHHhhcCCcc
Q 012543 298 GLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEV-LAHPATGAFWTHCGWNSTLESMCEGVPM 375 (461)
Q Consensus 298 a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~l-L~~~~~~~~I~HGG~gs~~eal~~GvP~ 375 (461)
++++. ++.|||++...... .+++++.++.++|+...+|+||.++ |.|.++++||||||+|||+|++++|||+
T Consensus 304 ~l~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~ 377 (496)
T KOG1192|consen 304 ALESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPM 377 (496)
T ss_pred HHHhCCCceEEEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCce
Confidence 99999 88889999875311 1222221112345677799999998 5999999999999999999999999999
Q ss_pred ccCcccchhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 012543 376 ICQPCHGEQMVIARYVSDVWKVGLHLER-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDL 439 (461)
Q Consensus 376 l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 439 (461)
|++|+++||+.||++++++ |.|..+.. +.+.+.+..++.+++++ ++|+++++++++.+++
T Consensus 378 v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 378 VCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred ecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 9999999999999999997 66666666 67666699999999999 8999999999999874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=5.6e-26 Score=218.56 Aligned_cols=319 Identities=14% Similarity=0.129 Sum_probs=200.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEEcCC-CCCCCcCCcccHHHHHHHHHHHc
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPN-PSNYPHFTFCSIQD-GLSETEASTTDFVALISVLHVKC 93 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
+|++.+.|+.||++|.++||++|.++||+|.|++.....+. .....|+.+..++. ++.. .... +.+.......
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~----~~~~-~~~~~~~~~~ 77 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRR----YFDL-KNIKDPFLVM 77 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCC----CchH-HHHHHHHHHH
Confidence 89999999999999999999999999999999998754432 23345788888763 2221 1111 1222222222
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEeCCCch--hhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCC
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLITDASWF--FTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSH 171 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~--~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (461)
.. +...+.-+.+ .+||+|++...+. .+..+|..+++|++..-..
T Consensus 78 ~~-~~~~~~i~~~-------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n-------------------------- 123 (352)
T PRK12446 78 KG-VMDAYVRIRK-------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD-------------------------- 123 (352)
T ss_pred HH-HHHHHHHHHh-------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC--------------------------
Confidence 11 1122222333 8899999987553 4688999999999885322
Q ss_pred CCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCC-CCccccCcCccCC
Q 012543 172 DLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFP-IPSFPIGPFHKYY 250 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~vG~~~~~~ 250 (461)
..+++ . .+.+ .+.++.+++ ++++.. ..++ .++.++|+...+.
T Consensus 124 ----~~~g~--------------~----nr~~------~~~a~~v~~-~f~~~~--------~~~~~~k~~~tG~Pvr~~ 166 (352)
T PRK12446 124 ----MTPGL--------------A----NKIA------LRFASKIFV-TFEEAA--------KHLPKEKVIYTGSPVREE 166 (352)
T ss_pred ----CCccH--------------H----HHHH------HHhhCEEEE-Eccchh--------hhCCCCCeEEECCcCCcc
Confidence 00110 0 0111 112333333 232211 1123 3478888766443
Q ss_pred CCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCH-HHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHH
Q 012543 251 PASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDE-TKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFL 329 (461)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~ 329 (461)
.. ... .+...+.+.-.+++++|+|..||...... +.+..++..+.. +.+++|+++.+. +.+...
T Consensus 167 ~~----~~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------~~~~~~ 231 (352)
T PRK12446 167 VL----KGN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------LDDSLQ 231 (352)
T ss_pred cc----ccc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---------HHHHHh
Confidence 21 001 11122233333468899999999886333 223334444432 477888777542 111110
Q ss_pred HHhcCCCceeeec-Ch-hhhhcCCCCCccccccCchHHHHHhhcCCccccCccc-----chhhhhHHHHHHhhhceeecC
Q 012543 330 EMLDGRGHIVKWA-PQ-QEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCH-----GEQMVIARYVSDVWKVGLHLE 402 (461)
Q Consensus 330 ~~~~~~~~~~~~v-p~-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~-----~DQ~~na~~v~~~lG~G~~l~ 402 (461)
.. .+..+.+|+ +. .++|..+|+ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++ .|+|..+.
T Consensus 232 -~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~ 306 (352)
T PRK12446 232 -NK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLY 306 (352)
T ss_pred -hc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcc
Confidence 01 233556777 43 469999999 99999999999999999999999974 489999999999 59999998
Q ss_pred C-ccCHHHHHHHHHHHhcchhHHHHHHHHHH
Q 012543 403 R-KLERGEVERAIRRVMVDAEGREMRNRAAI 432 (461)
Q Consensus 403 ~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 432 (461)
. +++++.|.+++.++++|. +.|++++++
T Consensus 307 ~~~~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 307 EEDVTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred hhcCCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 7 899999999999999882 245544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=5.6e-26 Score=217.70 Aligned_cols=305 Identities=17% Similarity=0.171 Sum_probs=189.5
Q ss_pred CeEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHH---
Q 012543 15 RRLILFPLP-FQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLH--- 90 (461)
Q Consensus 15 ~~il~~~~~-~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (461)
|||+|...+ +.||+..+++||++| |||+|+|++......... ..+....+++-.........+.........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLK--PRFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhc--cccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 578886665 999999999999999 699999999863322222 124555554321111111222222222221
Q ss_pred HHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCC
Q 012543 91 VKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDS 170 (461)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (461)
......+++..+.+.+ .+||+||+| +.+.+..+|+..|||++.+........ +....
T Consensus 77 ~~~~~~~~~~~~~l~~-------~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~----------~~~~~----- 133 (318)
T PF13528_consen 77 ARLARRIRREIRWLRE-------FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH----------PNFWL----- 133 (318)
T ss_pred HHHHHHHHHHHHHHHh-------cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc----------ccCCc-----
Confidence 1223334444444443 889999999 555578899999999999876622110 00000
Q ss_pred CCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHh--ccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCcc
Q 012543 171 HDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQ--MKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHK 248 (461)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~ 248 (461)
................ ...++..+..++. ...+ ......++||+..
T Consensus 134 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~--------~~~~~~~~~p~~~ 181 (318)
T PF13528_consen 134 -----------------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PPLP--------PFFRVPFVGPIIR 181 (318)
T ss_pred -----------------------chhhhHHHHHHHhhhhccCCcccceecCCcc-cccc--------ccccccccCchhc
Confidence 0001111221222211 2333334433333 1100 0223667887765
Q ss_pred CCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCC-CceEEEECCCccCCchhcccCchh
Q 012543 249 YYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSK-VPFLWVVRPGLVRGAEWIELLPRG 327 (461)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~lp~~ 327 (461)
+... .. . ..+++.|+|++|..... .++++++..+ +++++. +... .+..
T Consensus 182 ~~~~----~~--~---------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~------~~~~--- 230 (318)
T PF13528_consen 182 PEIR----EL--P---------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA------ADPR--- 230 (318)
T ss_pred cccc----cc--C---------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc------cccc---
Confidence 4322 00 0 12467799999987642 5567777766 555544 3331 0112
Q ss_pred HHHHhcCCCceeeec--ChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcc--cchhhhhHHHHHHhhhceeecCC
Q 012543 328 FLEMLDGRGHIVKWA--PQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC--HGEQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 328 ~~~~~~~~~~~~~~v--p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~--~~DQ~~na~~v~~~lG~G~~l~~ 403 (461)
.+|+.+.+|. +..++|..|++ +|+|||+||++|++++|+|+|++|. +.||..||+++++ +|+|+.++.
T Consensus 231 -----~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~ 302 (318)
T PF13528_consen 231 -----PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQ 302 (318)
T ss_pred -----CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEccc
Confidence 3455788875 45679999999 9999999999999999999999999 7899999999999 699999987
Q ss_pred -ccCHHHHHHHHHHH
Q 012543 404 -KLERGEVERAIRRV 417 (461)
Q Consensus 404 -~~~~~~l~~~i~~l 417 (461)
+++++.|.+.|+++
T Consensus 303 ~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 303 EDLTPERLAEFLERL 317 (318)
T ss_pred ccCCHHHHHHHHhcC
Confidence 89999999999865
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.3e-23 Score=196.09 Aligned_cols=310 Identities=18% Similarity=0.170 Sum_probs=191.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCCCC-CCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGF-SITIIHTKFNSP-NPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVK 92 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh-~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
++|++...|+.||+.|.++|+++|.++|+ +|.++.+....+ ...+..++++..++.+..............+ ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~----~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPF----KL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHH----HH
Confidence 47889999999999999999999999999 588886754433 3344457888888743322221111121111 22
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCCc--hhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCC
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDASW--FFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDS 170 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~--~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (461)
+.. +.+..+-+.+ ++||+|+.-..+ ..+..+|..+|||.+..-.
T Consensus 77 ~~~-~~~a~~il~~-------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq-------------------------- 122 (357)
T COG0707 77 LKG-VLQARKILKK-------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ-------------------------- 122 (357)
T ss_pred HHH-HHHHHHHHHH-------cCCCEEEecCCccccHHHHHHHhCCCCEEEEec--------------------------
Confidence 111 1122222332 889999997665 4467789999999998421
Q ss_pred CCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhC-CCCccccCcCccC
Q 012543 171 HDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREF-PIPSFPIGPFHKY 249 (461)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~vG~~~~~ 249 (461)
+..++.. .++.. +.++.+. .+++..+. .+ +.+...+|-...+
T Consensus 123 ----n~~~G~a------------------nk~~~------~~a~~V~-~~f~~~~~--------~~~~~~~~~tG~Pvr~ 165 (357)
T COG0707 123 ----NAVPGLA------------------NKILS------KFAKKVA-SAFPKLEA--------GVKPENVVVTGIPVRP 165 (357)
T ss_pred ----CCCcchh------------------HHHhH------Hhhceee-eccccccc--------cCCCCceEEecCcccH
Confidence 1112210 11111 1222222 22222110 00 1236677744333
Q ss_pred CCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhC--CCceEEEECCCccCCchhcccCchh
Q 012543 250 YPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIELLPRG 327 (461)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~lp~~ 327 (461)
.-. ..+.. ...+.. ..++++|+|+-||.+... +-+.+.+++..+ +.++++.++.+. ++.+...
T Consensus 166 ~~~----~~~~~--~~~~~~-~~~~~~ilV~GGS~Ga~~--ln~~v~~~~~~l~~~~~v~~~~G~~~------~~~~~~~ 230 (357)
T COG0707 166 EFE----ELPAA--EVRKDG-RLDKKTILVTGGSQGAKA--LNDLVPEALAKLANRIQVIHQTGKND------LEELKSA 230 (357)
T ss_pred Hhh----ccchh--hhhhhc-cCCCcEEEEECCcchhHH--HHHHHHHHHHHhhhCeEEEEEcCcch------HHHHHHH
Confidence 221 01111 111111 126899999999988622 222233343333 356666665542 1111121
Q ss_pred HHHHhcCC-CceeeecChhh-hhcCCCCCccccccCchHHHHHhhcCCccccCcc-c---chhhhhHHHHHHhhhceeec
Q 012543 328 FLEMLDGR-GHIVKWAPQQE-VLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC-H---GEQMVIARYVSDVWKVGLHL 401 (461)
Q Consensus 328 ~~~~~~~~-~~~~~~vp~~~-lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~-~---~DQ~~na~~v~~~lG~G~~l 401 (461)
. ...+ ..+.+|++.+. +|..+|+ +||++|.+|+.|+++.|+|.|.+|. . .||..||..++++ |.|..+
T Consensus 231 ~---~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i 304 (357)
T COG0707 231 Y---NELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVI 304 (357)
T ss_pred H---hhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEe
Confidence 1 1122 46678888755 9999999 9999999999999999999999997 2 4899999999996 999999
Q ss_pred CC-ccCHHHHHHHHHHHhcc
Q 012543 402 ER-KLERGEVERAIRRVMVD 420 (461)
Q Consensus 402 ~~-~~~~~~l~~~i~~ll~~ 420 (461)
.. ++|++.+.+.|.+++++
T Consensus 305 ~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 305 RQSELTPEKLAELILRLLSN 324 (357)
T ss_pred ccccCCHHHHHHHHHHHhcC
Confidence 98 89999999999999998
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=3.9e-23 Score=197.59 Aligned_cols=309 Identities=16% Similarity=0.093 Sum_probs=170.9
Q ss_pred eEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCce-EEEcCCCCCCCc-CCcccHHHHHHHHHHH
Q 012543 16 RLILFPLP-FQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFT-FCSIQDGLSETE-ASTTDFVALISVLHVK 92 (461)
Q Consensus 16 ~il~~~~~-~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (461)
||++...| +.||+.|.++||++|++ ||+|+|+++.. .....+..++. +...+. +.-.. ....+...........
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~-~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR-SKNYISKYGFKVFETFPG-IKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC-HHHhhhhhcCcceeccCC-ceEeecCCcCcHHHHHHhhccc
Confidence 56776665 55999999999999999 99999998754 22222223444 333321 11000 1111122221110011
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSHD 172 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (461)
....+.+..+.+.+ ++||+||+| +.+.+..+|+.+|||++.+..+... ..+ ...
T Consensus 78 ~~~~~~~~~~~l~~-------~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~~~---------~~~--- 131 (321)
T TIGR00661 78 PKKAIRREINIIRE-------YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------RYP---------LKT--- 131 (321)
T ss_pred cHHHHHHHHHHHHh-------cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------cCC---------ccc---
Confidence 11233344444443 889999999 6666788999999999987653100 000 000
Q ss_pred CcccCCCCCCCCCCCCCccccchhhhH-HHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCCC
Q 012543 173 LEAPVPELPPLRMKDIPVIETLYQETL-HQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYYP 251 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~~ 251 (461)
+..... .+.. ......++......++... + ..++. ++.+. . +
T Consensus 132 ---------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~--------~~p~~--~~~~~-~-~ 174 (321)
T TIGR00661 132 ---------------------DLIVYPTMAAL---RIFNERCERFIVPDYPFPY-T--------ICPKI--IKNME-G-P 174 (321)
T ss_pred ---------------------chhHHHHHHHH---HHhccccceEeeecCCCCC-C--------CCccc--cccCC-C-c
Confidence 000000 0111 1111122222222211110 0 00010 00000 0 0
Q ss_pred CCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHH
Q 012543 252 ASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEM 331 (461)
Q Consensus 252 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 331 (461)
... .+..++... +++.|++.+|+.. ...+++++++.+. +.+++...... ...+
T Consensus 175 ------~~~-~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~~----~~~~------- 227 (321)
T TIGR00661 175 ------LIR-YDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEVA----KNSY------- 227 (321)
T ss_pred ------ccc-hhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCCC----cccc-------
Confidence 000 112223222 4567888888743 2345667776653 22332221100 1112
Q ss_pred hcCCCceeeecC--hhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccc--hhhhhHHHHHHhhhceeecCC-ccC
Q 012543 332 LDGRGHIVKWAP--QQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHG--EQMVIARYVSDVWKVGLHLER-KLE 406 (461)
Q Consensus 332 ~~~~~~~~~~vp--~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~l~~-~~~ 406 (461)
++|+.+.+|.| ..+.|+.|++ +|||||++|++|++++|+|++++|..+ ||..||+.+++ .|+|+.++. ++
T Consensus 228 -~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~- 302 (321)
T TIGR00661 228 -NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL- 302 (321)
T ss_pred -CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH-
Confidence 34558889997 4568899999 999999999999999999999999854 89999999999 599999987 44
Q ss_pred HHHHHHHHHHHhcchhHHHHH
Q 012543 407 RGEVERAIRRVMVDAEGREMR 427 (461)
Q Consensus 407 ~~~l~~~i~~ll~~~~~~~~~ 427 (461)
++.+++.++++| +.|+
T Consensus 303 --~~~~~~~~~~~~---~~~~ 318 (321)
T TIGR00661 303 --RLLEAILDIRNM---KRYK 318 (321)
T ss_pred --HHHHHHHhcccc---cccc
Confidence 677788888887 5554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=9.5e-20 Score=177.49 Aligned_cols=344 Identities=15% Similarity=0.094 Sum_probs=203.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEcCC-CCCCCcCCcccHHHHHHHHHHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS-PNPSNYPHFTFCSIQD-GLSETEASTTDFVALISVLHVK 92 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
|||+|++.+..||...++.|+++|.++||+|++++.+... .......|+++..++. +... .............
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRR-----KGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCC-----CChHHHHHHHHHH
Confidence 5999999998999999999999999999999999885421 1112224677776652 1111 1111111111111
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCC--chhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCC
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDAS--WFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDS 170 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~--~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (461)
...+....+.+.+ .+||+|++... .+.+..++...++|+|...... . +
T Consensus 77 -~~~~~~~~~~ik~-------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-----------------~-~---- 126 (357)
T PRK00726 77 -LKGVLQARKILKR-------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA-----------------V-P---- 126 (357)
T ss_pred -HHHHHHHHHHHHh-------cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-----------------C-c----
Confidence 1111222222222 78999999963 2445567888899998642110 0 0
Q ss_pred CCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCC
Q 012543 171 HDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYY 250 (461)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~ 250 (461)
. ...++.. ..++.++..+...+. ..-..++.++|+.....
T Consensus 127 -----------------------~---~~~r~~~------~~~d~ii~~~~~~~~--------~~~~~~i~vi~n~v~~~ 166 (357)
T PRK00726 127 -----------------------G---LANKLLA------RFAKKVATAFPGAFP--------EFFKPKAVVTGNPVREE 166 (357)
T ss_pred -----------------------c---HHHHHHH------HHhchheECchhhhh--------ccCCCCEEEECCCCChH
Confidence 0 0011111 123333333322211 00123477777554332
Q ss_pred CCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCC--ceEEEECCCccCCchhcccCchhH
Q 012543 251 PASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKV--PFLWVVRPGLVRGAEWIELLPRGF 328 (461)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~~~~lp~~~ 328 (461)
.. . +.. ....+...+++++|++..|+... ......+.+++++... .+++.++.+.. ..+.+..
T Consensus 167 ~~----~-~~~--~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~------~~~~~~~ 231 (357)
T PRK00726 167 IL----A-LAA--PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL------EEVRAAY 231 (357)
T ss_pred hh----c-ccc--hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH------HHHHHHh
Confidence 11 0 000 01111222345667776665432 1222333366655433 33444454421 1111111
Q ss_pred HHHhcCCCceeeecC-hhhhhcCCCCCccccccCchHHHHHhhcCCccccCcc----cchhhhhHHHHHHhhhceeecCC
Q 012543 329 LEMLDGRGHIVKWAP-QQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC----HGEQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 329 ~~~~~~~~~~~~~vp-~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG~G~~l~~ 403 (461)
+ .+-++.+.+|+. ..++++.+|+ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|..+..
T Consensus 232 -~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~ 306 (357)
T PRK00726 232 -A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQ 306 (357)
T ss_pred -h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEc
Confidence 1 222356778884 4679999999 9999999999999999999999997 46899999999995 99999976
Q ss_pred -ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 404 -KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 404 -~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
+++++.|.++|.++++| ++++++..+-+.++. +..+..+.++.+.+.+++
T Consensus 307 ~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 357 (357)
T PRK00726 307 SDLTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELARK 357 (357)
T ss_pred ccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhhC
Confidence 67899999999999999 666655555444443 677788888888877764
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=3.4e-18 Score=166.17 Aligned_cols=313 Identities=15% Similarity=0.121 Sum_probs=182.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEEcCCC-CCCCcCCcccHHHHHHHHHHHc
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPN-PSNYPHFTFCSIQDG-LSETEASTTDFVALISVLHVKC 93 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
+|++.+.++.||....+.|++.|.++||+|++++....... .....|+++..++-. ... ......+.......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRR-----KGSLKKLKAPFKLL 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCC-----CChHHHHHHHHHHH
Confidence 58899999999999999999999999999999987532211 112235666665421 111 11111111111111
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEeCCC--chhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCC
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLITDAS--WFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSH 171 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~--~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (461)
..+... .++++. ++||+|+++.. ...+..+|...++|++...... +
T Consensus 76 -~~~~~~-~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-----------------~------- 123 (350)
T cd03785 76 -KGVLQA-RKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-----------------V------- 123 (350)
T ss_pred -HHHHHH-HHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------C-------
Confidence 111122 222222 78999998753 3445678899999998632110 0
Q ss_pred CCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCCC
Q 012543 172 DLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYYP 251 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~~ 251 (461)
. .. ..++ ....++.++..+....+. . -+.++.++|.......
T Consensus 124 ------~---------------~~---~~~~------~~~~~~~vi~~s~~~~~~-----~---~~~~~~~i~n~v~~~~ 165 (350)
T cd03785 124 ------P---------------GL---ANRL------LARFADRVALSFPETAKY-----F---PKDKAVVTGNPVREEI 165 (350)
T ss_pred ------c---------------cH---HHHH------HHHhhCEEEEcchhhhhc-----C---CCCcEEEECCCCchHH
Confidence 0 00 0000 112345566555443332 0 0234666775443221
Q ss_pred CCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCC-HHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHH
Q 012543 252 ASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAID-ETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLE 330 (461)
Q Consensus 252 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~ 330 (461)
. .+.. . ...+...+++++|++..|+..... .+.+..++..+.+.+..+++.++.+. .+.+.+.+.+
T Consensus 166 ~-----~~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~~ 232 (350)
T cd03785 166 L-----ALDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYEE 232 (350)
T ss_pred h-----hhhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHhc
Confidence 1 0011 0 222222334666777667654311 11222333344333344455554432 1222222222
Q ss_pred HhcCCCceeeec-ChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcc----cchhhhhHHHHHHhhhceeecCC-c
Q 012543 331 MLDGRGHIVKWA-PQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC----HGEQMVIARYVSDVWKVGLHLER-K 404 (461)
Q Consensus 331 ~~~~~~~~~~~v-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG~G~~l~~-~ 404 (461)
. ..|+.+.+|+ +..++|..+|+ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+. |.|..++. +
T Consensus 233 ~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~ 308 (350)
T cd03785 233 L-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEE 308 (350)
T ss_pred c-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCC
Confidence 2 3577888988 44669999999 9999999999999999999999985 46799999999994 99999876 4
Q ss_pred cCHHHHHHHHHHHhcc
Q 012543 405 LERGEVERAIRRVMVD 420 (461)
Q Consensus 405 ~~~~~l~~~i~~ll~~ 420 (461)
.+.+++.++|.++++|
T Consensus 309 ~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 309 LTPERLAAALLELLSD 324 (350)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 6899999999999998
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=8.1e-17 Score=156.34 Aligned_cols=312 Identities=17% Similarity=0.139 Sum_probs=172.6
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHc
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSP-NPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKC 93 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
|||+|++.+..||+.....|+++|.++||+|++++.+.... ......|++++.++-.... .......+.......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~----~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLR----RKGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcC----CCChHHHHHHHHHHH
Confidence 48999999999999988899999999999999998743221 1112246777666522110 111222221111111
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEeCCCc--hhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCC
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLITDASW--FFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSH 171 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~--~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (461)
..+... .++++. ++||+|++.... ..+..++..+++|.+...... .
T Consensus 77 -~~~~~l-~~~i~~------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~-----------------~------- 124 (348)
T TIGR01133 77 -KAVFQA-RRILKK------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA-----------------V------- 124 (348)
T ss_pred -HHHHHH-HHHHHh------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC-----------------C-------
Confidence 111122 222332 789999998543 335557888899987421100 0
Q ss_pred CCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCCC
Q 012543 172 DLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYYP 251 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~~ 251 (461)
. .. ..++. .+.++.++..+...-++ ....++|.-.....
T Consensus 125 ------~---------------~~---~~~~~------~~~~d~ii~~~~~~~~~-----------~~~~~i~n~v~~~~ 163 (348)
T TIGR01133 125 ------P---------------GL---TNKLL------SRFAKKVLISFPGAKDH-----------FEAVLVGNPVRQEI 163 (348)
T ss_pred ------c---------------cH---HHHHH------HHHhCeeEECchhHhhc-----------CCceEEcCCcCHHH
Confidence 0 00 01111 12345555544332221 11244443322111
Q ss_pred CCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHh---CCCceEEEECCCccCCchhcccCchhH
Q 012543 252 ASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLAN---SKVPFLWVVRPGLVRGAEWIELLPRGF 328 (461)
Q Consensus 252 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~ 328 (461)
. ..+.. .+++...+++++|.+..|+... ......+.++++. .+..+++..+.+. . +.+
T Consensus 164 ~----~~~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~------~----~~l 224 (348)
T TIGR01133 164 R----SLPVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND------L----EKV 224 (348)
T ss_pred h----cccch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch------H----HHH
Confidence 0 00000 1122222234555554455442 2222223344433 3445554444332 1 112
Q ss_pred HHHhcC-CC-ceeeec--ChhhhhcCCCCCccccccCchHHHHHhhcCCccccCccc---chhhhhHHHHHHhhhceeec
Q 012543 329 LEMLDG-RG-HIVKWA--PQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCH---GEQMVIARYVSDVWKVGLHL 401 (461)
Q Consensus 329 ~~~~~~-~~-~~~~~v--p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~lG~G~~l 401 (461)
.+.... ++ .++.|. +...+|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+++ .|.|..+
T Consensus 225 ~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~ 301 (348)
T TIGR01133 225 KNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVI 301 (348)
T ss_pred HHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEE
Confidence 111111 11 122333 45679999999 99999988999999999999999863 467889999998 4999988
Q ss_pred CC-ccCHHHHHHHHHHHhcchhHHHHHH
Q 012543 402 ER-KLERGEVERAIRRVMVDAEGREMRN 428 (461)
Q Consensus 402 ~~-~~~~~~l~~~i~~ll~~~~~~~~~~ 428 (461)
.. +.++++|.+++.++++| ++.++
T Consensus 302 ~~~~~~~~~l~~~i~~ll~~---~~~~~ 326 (348)
T TIGR01133 302 RQKELLPEKLLEALLKLLLD---PANLE 326 (348)
T ss_pred ecccCCHHHHHHHHHHHHcC---HHHHH
Confidence 76 56899999999999999 55443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.77 E-value=2.3e-17 Score=161.20 Aligned_cols=351 Identities=9% Similarity=-0.023 Sum_probs=194.6
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHc
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN-SPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKC 93 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
.||++++.++.||++|. +|+++|+++|++|.|++.... .+...-..++++..++- ..+.+.+..+...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v---------~G~~~~l~~~~~~- 74 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSV---------MGLREVLGRLGRL- 74 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhh---------ccHHHHHHHHHHH-
Confidence 38999999999999999 999999999999999887521 11111011233333331 1111222222111
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEeCCC-chhhHH--HHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCC
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLITDAS-WFFTHD--VAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDS 170 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~-~~~a~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (461)
...+.+..+.+.+ ++||+||.-.. ++.... +|+.+|||++...+- ..+.+
T Consensus 75 ~~~~~~~~~~l~~-------~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P--------------~~waw------ 127 (385)
T TIGR00215 75 LKIRKEVVQLAKQ-------AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP--------------QVWAW------ 127 (385)
T ss_pred HHHHHHHHHHHHh-------cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC--------------cHhhc------
Confidence 1222233333433 88999997543 222223 789999999975311 00000
Q ss_pred CCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCC
Q 012543 171 HDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYY 250 (461)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~ 250 (461)
+. .+...+. +.++.++..+..+.+. + . ..+.+..+||....+.
T Consensus 128 ---------------~~------~~~r~l~----------~~~d~v~~~~~~e~~~--~---~-~~g~~~~~vGnPv~~~ 170 (385)
T TIGR00215 128 ---------------RK------WRAKKIE----------KATDFLLAILPFEKAF--Y---Q-KKNVPCRFVGHPLLDA 170 (385)
T ss_pred ---------------Cc------chHHHHH----------HHHhHhhccCCCcHHH--H---H-hcCCCEEEECCchhhh
Confidence 00 1111111 1233333333322221 1 1 1134566788444222
Q ss_pred CCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhC-----CCceEEEECCCccCCchhcccCc
Q 012543 251 PASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIELLP 325 (461)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~lp 325 (461)
.. ...+...+..+.+.-..++++|.+..||....-......++++++.+ +.++++...... +.+ .+
T Consensus 171 ~~---~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~--~~~---~~- 241 (385)
T TIGR00215 171 IP---LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK--RRL---QF- 241 (385)
T ss_pred cc---ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--hHH---HH-
Confidence 11 00011112222333334577888888887652133445555554432 234444433321 000 01
Q ss_pred hhHHHHhcCCCceeeec-ChhhhhcCCCCCccccccCchHHHHHhhcCCccccC----cccc---------hhhhhHHHH
Q 012543 326 RGFLEMLDGRGHIVKWA-PQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQ----PCHG---------EQMVIARYV 391 (461)
Q Consensus 326 ~~~~~~~~~~~~~~~~v-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~----P~~~---------DQ~~na~~v 391 (461)
+.+.+....+..+..+. +...++..+|+ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+
T Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil 318 (385)
T TIGR00215 242 EQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL 318 (385)
T ss_pred HHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh
Confidence 11111111122332222 33459999999 9999999988 999999999999 7631 378899999
Q ss_pred HHhhhceeecCC-ccCHHHHHHHHHHHhcch----h-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012543 392 SDVWKVGLHLER-KLERGEVERAIRRVMVDA----E-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISY 457 (461)
Q Consensus 392 ~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~----~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 457 (461)
.+. ++...+.. +.|++.|.+.+.++++|. + ...+++..+++.+.+ .++|.+.++.+.++++
T Consensus 319 ~~~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~a~~i~~~ 385 (385)
T TIGR00215 319 ANR-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI----YCNADSERAAQAVLEF 385 (385)
T ss_pred cCC-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHhhC
Confidence 995 99988876 899999999999999993 2 234444444554444 3778888888877653
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=137.02 Aligned_cols=328 Identities=15% Similarity=0.103 Sum_probs=194.0
Q ss_pred CCCeEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEEcCCCCC--CCcCCcccHHHHH
Q 012543 13 KGRRLILFPLP--FQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFTFCSIQDGLS--ETEASTTDFVALI 86 (461)
Q Consensus 13 ~~~~il~~~~~--~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 86 (461)
+.+||+|++.- +.||+..+..||++|++. |.+|++++............|+.++.+|.... .+.....+..-..
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l 87 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDL 87 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCH
Confidence 45699999884 779999999999999998 99999999864444433336899999994322 1221111111111
Q ss_pred HHHHHHcchhHHH-HHHHHhhcccccCCCCccEEEeCCCchhhHH-----HHHH--cCCCeEEEecccHHHHHHHhhhhh
Q 012543 87 SVLHVKCAAPFQD-CLAKLLSNAEEKEEEPIACLITDASWFFTHD-----VAES--LKLPRIVLRSLSVSSSLVYAALPV 158 (461)
Q Consensus 87 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~-----~A~~--lgiP~v~~~~~~~~~~~~~~~~~~ 158 (461)
..+.+. -++ .+..+.. ++||++|+|.+-++... +++. -+-++|..
T Consensus 88 ~e~~~~----Rs~lil~t~~~-------fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~---------------- 140 (400)
T COG4671 88 EETKKL----RSQLILSTAET-------FKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLG---------------- 140 (400)
T ss_pred HHHHHH----HHHHHHHHHHh-------cCCCEEEEeccccchhhhhhHHHHHHhhcCCcceee----------------
Confidence 222222 122 2334333 89999999966553110 1110 01111111
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHH-HHhhCC
Q 012543 159 LSQKGYFPIQDSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAK-FHREFP 237 (461)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~ 237 (461)
.+++.......... ++-.......-+..|.+++-.+|.+-.+.-.+ .++...
T Consensus 141 --------------------------lr~i~D~p~~~~~~-w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~ 193 (400)
T COG4671 141 --------------------------LRSIRDIPQELEAD-WRRAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIR 193 (400)
T ss_pred --------------------------hHhhhhchhhhccc-hhhhHHHHHHHHhheEEEEecCccccChhhcCCccHhhh
Confidence 01111111000000 01011111222345666665655553321000 111112
Q ss_pred CCccccCcCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHh-CCCc--eEEEECCCc
Q 012543 238 IPSFPIGPFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLAN-SKVP--FLWVVRPGL 314 (461)
Q Consensus 238 ~~~~~vG~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~--~i~~~~~~~ 314 (461)
.++.|+|.+.-+-+ ....|.. . .+.+.-|+||-|.-. ...+++...+.|-.. .+.+ .+++.+..
T Consensus 194 ~k~~ytG~vq~~~~---~~~~p~~-------~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~- 260 (400)
T COG4671 194 AKMRYTGFVQRSLP---HLPLPPH-------E-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF- 260 (400)
T ss_pred hheeEeEEeeccCc---CCCCCCc-------C-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC-
Confidence 34899998822111 1112222 1 134567899888744 356777777766555 3444 33333332
Q ss_pred cCCchhcccCchhHHH----Hhc--CCCceeeecCh-hhhhcCCCCCccccccCchHHHHHhhcCCccccCccc---chh
Q 012543 315 VRGAEWIELLPRGFLE----MLD--GRGHIVKWAPQ-QEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCH---GEQ 384 (461)
Q Consensus 315 ~~~~~~~~~lp~~~~~----~~~--~~~~~~~~vp~-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---~DQ 384 (461)
.|....+ ..+ +++.+..|-.+ ..++..+++ +|+-||+||+||-|.+|+|.+++|.. -||
T Consensus 261 ---------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQ 329 (400)
T COG4671 261 ---------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQ 329 (400)
T ss_pred ---------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHH
Confidence 4433333 233 56678888766 559999998 99999999999999999999999983 599
Q ss_pred hhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHhc
Q 012543 385 MVIARYVSDVWKVGLHLER-KLERGEVERAIRRVMV 419 (461)
Q Consensus 385 ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~ 419 (461)
-..|+|+++ ||+--++.. ++++..+.++|...++
T Consensus 330 liRA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 330 LIRAQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 999999999 899999988 9999999999999998
No 37
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.68 E-value=5e-15 Score=145.59 Aligned_cols=348 Identities=13% Similarity=0.056 Sum_probs=171.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHc
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN-SPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKC 93 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
|||++++.++.||++|.. ++++|+++++++.+++.... .+...-..++.+..++ ...+.+.+.......
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~g~~~~~~~~~~~~ 71 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELA---------VMGLVEVLPRLPRLL 71 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhh---------hccHHHHHHHHHHHH
Confidence 589999999999999999 99999998888888764321 1111100122222222 111112211111111
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEeCCC-chhh--HHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCC
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLITDAS-WFFT--HDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDS 170 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~-~~~a--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (461)
..+... .++++. ++||+|++-.. +.+. ...|...|||++.+..... +
T Consensus 72 -~~~~~~-~~~l~~------~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~----------------~------ 121 (380)
T PRK00025 72 -KIRRRL-KRRLLA------EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV----------------W------ 121 (380)
T ss_pred -HHHHHH-HHHHHH------cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch----------------h------
Confidence 111222 223332 88999987432 2233 3346788999887522100 0
Q ss_pred CCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCC
Q 012543 171 HDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYY 250 (461)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~ 250 (461)
+ +. . ... .+ ....++.++..+....+. + .. ...++.++|......
T Consensus 122 ----~---~~-----------~-~~~---~~-------~~~~~d~i~~~~~~~~~~--~---~~-~g~~~~~~G~p~~~~ 166 (380)
T PRK00025 122 ----A---WR-----------Q-GRA---FK-------IAKATDHVLALFPFEAAF--Y---DK-LGVPVTFVGHPLADA 166 (380)
T ss_pred ----h---cC-----------c-hHH---HH-------HHHHHhhheeCCccCHHH--H---Hh-cCCCeEEECcCHHHh
Confidence 0 00 0 000 00 112334445444332221 1 11 123466777333221
Q ss_pred CCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhC-----CCceEEEECCCccCCchhcccCc
Q 012543 251 PASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIELLP 325 (461)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~lp 325 (461)
.. ..+....+.+.+.-.+++++|++..||...........++++++.+ +.+++++.+.+. ..
T Consensus 167 ~~----~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~---------~~ 233 (380)
T PRK00025 167 IP----LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK---------RR 233 (380)
T ss_pred cc----cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---------hH
Confidence 11 0011112333333323456677777765532122234444544332 334555543221 11
Q ss_pred hhHHHHhc----CCCceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccc--------hhhhh-----H
Q 012543 326 RGFLEMLD----GRGHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHG--------EQMVI-----A 388 (461)
Q Consensus 326 ~~~~~~~~----~~~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--------DQ~~n-----a 388 (461)
+.+.+... -++.+.. -.-..++..+|+ +|+.+|.+++ |++++|+|+|++|... .|..| +
T Consensus 234 ~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (380)
T PRK00025 234 EQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLP 309 (380)
T ss_pred HHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehH
Confidence 11222111 1222221 122558999999 9999999887 9999999999985321 22222 2
Q ss_pred HHHHHhhhceeecCC-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 389 RYVSDVWKVGLHLER-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 389 ~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
..+.+. +++..+.. ..+++.|.+.+.++++| ++.+++..+-.+.+.+.. ..++..+.++.+.+.+.
T Consensus 310 ~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 310 NLLAGR-ELVPELLQEEATPEKLARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHhcCC-CcchhhcCCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 333332 33333433 67899999999999999 444433333222223222 34566777777766553
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=2.5e-15 Score=147.61 Aligned_cols=164 Identities=14% Similarity=0.166 Sum_probs=109.4
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHhC-CCceEEEECCCccCCchhcccCchhHHH---HhcCCCceeeecChh-h
Q 012543 272 APKSVIYVSFGSIAAIDETKFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLE---MLDGRGHIVKWAPQQ-E 346 (461)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~~~~~vp~~-~ 346 (461)
+++++|++..|+.... ..+..+++++.+. +.+++++.+.+.. +.+.+.+ ..+.|+.+.+|+++. +
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~ 269 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDE 269 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHH
Confidence 3567788877876532 2345566666553 4566665553310 1112211 122467888999874 6
Q ss_pred hhcCCCCCccccccCchHHHHHhhcCCccccC-cccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHH
Q 012543 347 VLAHPATGAFWTHCGWNSTLESMCEGVPMICQ-PCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGRE 425 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~ 425 (461)
++..+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |.|+.. -+.+++.++|.++++| +.
T Consensus 270 l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---~~~~~l~~~i~~ll~~---~~ 340 (380)
T PRK13609 270 LFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---RDDEEVFAKTEALLQD---DM 340 (380)
T ss_pred HHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---CCHHHHHHHHHHHHCC---HH
Confidence 9999998 99999988999999999999985 6667778899988884 998754 3679999999999999 44
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 426 MRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 426 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
.+++ +++..++ .....+.++.++.+++.+
T Consensus 341 ~~~~---m~~~~~~-~~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 341 KLLQ---MKEAMKS-LYLPEPADHIVDDILAEN 369 (380)
T ss_pred HHHH---HHHHHHH-hCCCchHHHHHHHHHHhh
Confidence 4333 3333322 113446666666666554
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.63 E-value=7.7e-15 Score=136.84 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=76.7
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhC--CCceEEEECCCccCCchhcccCchhHHHH--hcCCCceeeecChh-hhh
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIELLPRGFLEM--LDGRGHIVKWAPQQ-EVL 348 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vp~~-~lL 348 (461)
.+.|++++|..... .....+++++... +.++.++++.... ..+.+.+. ...|+.+..+++++ ++|
T Consensus 170 ~~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNP--------NLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCc--------CHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 46799999976643 3445566777654 3566666665421 11222221 13467888999986 699
Q ss_pred cCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHH
Q 012543 349 AHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARY 390 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 390 (461)
..+|+ +|++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 40
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.57 E-value=1.8e-12 Score=126.91 Aligned_cols=359 Identities=13% Similarity=0.038 Sum_probs=196.3
Q ss_pred CCCccCHHHHHHHHHHHHh--CCCeEE---EEeCCCCCCC-CCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHH-Hcc
Q 012543 22 LPFQGHINPMLQLANILYS--KGFSIT---IIHTKFNSPN-PSNYPHFTFCSIQDGLSETEASTTDFVALISVLHV-KCA 94 (461)
Q Consensus 22 ~~~~GHi~p~l~La~~L~~--rGh~V~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (461)
+.++|-=.-.++||++|++ .|++|. |+++....+. .....| .+..+|. +..........+.+... ...
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~s----gg~~~~~~~~~~~~~~~gl~~ 78 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELPS----GGFSYQSLRGLLRDLRAGLVG 78 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCCC----CCccCCCHHHHHHHHHhhHHH
Confidence 3567777888999999998 599999 9988743322 222234 4555542 21112333344444444 222
Q ss_pred hhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCCCCc
Q 012543 95 APFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSHDLE 174 (461)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 174 (461)
. +.+.+..+.+.. .+||+|+.-.-+. +..+|...|+|++.+.+.-....... .+.. ...++.
T Consensus 79 ~-~~~~~~~~~~~~-----~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~~-------~~~~----~~~~~~ 140 (396)
T TIGR03492 79 L-TLGQWRALRKWA-----KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWES-------GPRR----SPSDEY 140 (396)
T ss_pred H-HHHHHHHHHHHh-----hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeecC-------CCCC----ccchhh
Confidence 2 223333333311 2899999987666 88899999999999776611110000 0000 001112
Q ss_pred ccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhc-cCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCccCCCCC
Q 012543 175 APVPELPPLRMKDIPVIETLYQETLHQFAAEAINQM-KASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKYYPAS 253 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 253 (461)
..+++..... | +..... +.++.++..+..+-+ .+ +. .+.++.+||....+.-.
T Consensus 141 ~~~~G~~~~p-----------------~--e~n~l~~~~a~~v~~~~~~t~~--~l---~~-~g~k~~~vGnPv~d~l~- 194 (396)
T TIGR03492 141 HRLEGSLYLP-----------------W--ERWLMRSRRCLAVFVRDRLTAR--DL---RR-QGVRASYLGNPMMDGLE- 194 (396)
T ss_pred hccCCCccCH-----------------H--HHHHhhchhhCEEeCCCHHHHH--HH---HH-CCCeEEEeCcCHHhcCc-
Confidence 2222211100 0 111112 344555544432222 11 11 23568999955544321
Q ss_pred cCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhC----CCceEEEECCCccCCchhcccCchhHH
Q 012543 254 ASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANS----KVPFLWVVRPGLVRGAEWIELLPRGFL 329 (461)
Q Consensus 254 ~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~ 329 (461)
+... .-+ .+++++|.+-.||......+.+..++++++.+ +..+++.+.++... ..+-..+.
T Consensus 195 -----~~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~-----~~~~~~l~ 259 (396)
T TIGR03492 195 -----PPER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL-----EKLQAILE 259 (396)
T ss_pred -----cccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH-----HHHHHHHH
Confidence 0010 011 22467899999998653334445556655553 45677766443210 11111111
Q ss_pred H-Hh--------------cCCCceeeecCh-hhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHH
Q 012543 330 E-ML--------------DGRGHIVKWAPQ-QEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSD 393 (461)
Q Consensus 330 ~-~~--------------~~~~~~~~~vp~-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 393 (461)
+ .. ..++.+..+..+ .+++..+|+ +|+-+|..| .|+++.|+|+|++|....|. |+...++
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~ 335 (396)
T TIGR03492 260 DLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA 335 (396)
T ss_pred hcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh
Confidence 0 00 012344444433 569999999 999999766 99999999999999877786 9877665
Q ss_pred hh----hceeecCCccCHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHhhcCCChHHHHHHHHHH
Q 012543 394 VW----KVGLHLERKLERGEVERAIRRVMVDAEGREMRNRAA-ILKEKLDLCTKQGSSSYQSLENLISY 457 (461)
Q Consensus 394 ~l----G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~-~l~~~~~~~~~~~g~~~~~~~~l~~~ 457 (461)
. |.++.+.. .+.+.|.+++.++++| +...++.. ..+.++. +++.+.+.++.+.+.
T Consensus 336 -~~~l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~lg----~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 336 -QSRLLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCRRNGQERMG----PPGASARIAESILKQ 395 (396)
T ss_pred -hHhhcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHh
Confidence 3 55655543 5669999999999999 55444333 3333333 556666666655543
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.56 E-value=5.3e-13 Score=131.21 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=110.7
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHH-HhC-CCceEEEECCCccCCchhcccCchhHHHH--hcCCCceeeecChh-h
Q 012543 272 APKSVIYVSFGSIAAIDETKFLEVAWGL-ANS-KVPFLWVVRPGLVRGAEWIELLPRGFLEM--LDGRGHIVKWAPQQ-E 346 (461)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~-~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vp~~-~ 346 (461)
+++++|+++.|+... ...+..+++++ +.. +.+++++.+.+. .+-+.+.+. ...++.+.+|+++. +
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHH
Confidence 357788898898763 23344445443 322 345555554331 011112211 12466778998764 5
Q ss_pred hhcCCCCCccccccCchHHHHHhhcCCccccC-cccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHH
Q 012543 347 VLAHPATGAFWTHCGWNSTLESMCEGVPMICQ-PCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGRE 425 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~ 425 (461)
++..+|+ +|+.+|..|+.||+++|+|+|++ |..++|..|+..+++. |+|+... +.+++.++|.++++| +.
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~---~~ 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNG---NE 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcC---HH
Confidence 9999999 99998888999999999999998 6666678999999995 9998753 788899999999998 32
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 426 MRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 426 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
..++|++..++.. +..+..+.++.+.+.+.
T Consensus 341 ---~~~~m~~~~~~~~-~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 341 ---QLTNMISTMEQDK-IKYATQTICRDLLDLIG 370 (391)
T ss_pred ---HHHHHHHHHHHhc-CCCCHHHHHHHHHHHhh
Confidence 2234444444322 34566777777766654
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=4e-16 Score=134.58 Aligned_cols=135 Identities=22% Similarity=0.265 Sum_probs=94.7
Q ss_pred EEEEEccccccCC-HHHHHHHHHHHHh--CCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecC-hhhhhcCC
Q 012543 276 VIYVSFGSIAAID-ETKFLEVAWGLAN--SKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAP-QQEVLAHP 351 (461)
Q Consensus 276 ~v~vs~Gs~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-~~~lL~~~ 351 (461)
+|+|+.||..... .+.+..++..+.. .+.+++++++.... ......+ +..+.++.+.+|++ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~------~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY------EELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC------HHHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH------HHHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 5899999877521 1112223333332 24677777776531 1111111 11125668889999 57799999
Q ss_pred CCCccccccCchHHHHHhhcCCccccCcccc----hhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHhcc
Q 012543 352 ATGAFWTHCGWNSTLESMCEGVPMICQPCHG----EQMVIARYVSDVWKVGLHLER-KLERGEVERAIRRVMVD 420 (461)
Q Consensus 352 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~ 420 (461)
|+ +|||||.||+.|++++|+|+|++|... +|..||..+++. |+|..+.. ..+.+.|.+.|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999988 999999999994 99999987 77899999999999999
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.49 E-value=1.2e-11 Score=121.45 Aligned_cols=176 Identities=12% Similarity=0.061 Sum_probs=109.9
Q ss_pred hhhhcCCCCCCeEEEEEccccccCCHHH-HHHHHHHHH-----hCCCceEEEECCCccCCchhcccCchhHHHH-hcCCC
Q 012543 264 CISRLDKQAPKSVIYVSFGSIAAIDETK-FLEVAWGLA-----NSKVPFLWVVRPGLVRGAEWIELLPRGFLEM-LDGRG 336 (461)
Q Consensus 264 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~-~~~~~~a~~-----~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~-~~~~~ 336 (461)
+.+-+.-.+++++|++..|+........ +..+...+. ..+.+++++++.+.. +-+.+.+. ...++
T Consensus 196 ~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v 267 (382)
T PLN02605 196 LRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPV 267 (382)
T ss_pred HHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCe
Confidence 4444443345677777777655422222 222322221 123455666654420 11111111 12356
Q ss_pred ceeeecChh-hhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhh-hhHHHHHHhhhceeecCCccCHHHHHHHH
Q 012543 337 HIVKWAPQQ-EVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQM-VIARYVSDVWKVGLHLERKLERGEVERAI 414 (461)
Q Consensus 337 ~~~~~vp~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~lG~G~~l~~~~~~~~l~~~i 414 (461)
.+.+|+++. +++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.. -++++|.++|
T Consensus 268 ~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la~~i 341 (382)
T PLN02605 268 KVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIARIV 341 (382)
T ss_pred EEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHHHHH
Confidence 778999874 49999999 999999999999999999999998777775 799999985 999765 4789999999
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 415 RRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 415 ~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
.++++|+ .+..++|++..++.. ...+..+.++.+.+.+.
T Consensus 342 ~~ll~~~-----~~~~~~m~~~~~~~~-~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 342 AEWFGDK-----SDELEAMSENALKLA-RPEAVFDIVHDLHELVR 380 (382)
T ss_pred HHHHcCC-----HHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhh
Confidence 9999871 122333444433221 44556666666665543
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.44 E-value=5.5e-10 Score=108.52 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=97.2
Q ss_pred CeEEEEEcccccc-CCHHHHHHHHHHHHhC-CCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhh---hh
Q 012543 274 KSVIYVSFGSIAA-IDETKFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQE---VL 348 (461)
Q Consensus 274 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~---lL 348 (461)
++.+++..|+... ...+.+..++..+... +..++++..+.. ...+. ....|+.+.+|+++.+ ++
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~----------~~~~~-~~~~~v~~~g~~~~~~~~~~~ 264 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA----------RARLE-ARYPNVHFLGFLDGEELAAAY 264 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch----------HHHHh-ccCCcEEEEeccCHHHHHHHH
Confidence 4567777887654 2233333333333332 344443332221 01111 2335668889998765 78
Q ss_pred cCCCCCccccccC----chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHH
Q 012543 349 AHPATGAFWTHCG----WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGR 424 (461)
Q Consensus 349 ~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~ 424 (461)
..+|+ +|+.+. .+++.||+++|+|+|+.+.. .+...++.. +.|...+. -+.+++.++|.++++| +
T Consensus 265 ~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~-~~~~~l~~~i~~l~~~---~ 333 (364)
T cd03814 265 ASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP-GDAEAFAAALAALLAD---P 333 (364)
T ss_pred HhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC-CCHHHHHHHHHHHHcC---H
Confidence 89998 886654 47899999999999988754 355667763 88887765 5778899999999999 4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 425 EMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 425 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
..+++.. +..+... +.-+.++..+.+++.+
T Consensus 334 ~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 334 ELRRRMA---ARARAEA-ERRSWEAFLDNLLEAY 363 (364)
T ss_pred HHHHHHH---HHHHHHH-hhcCHHHHHHHHHHhh
Confidence 4333222 2222211 3455677777776654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.40 E-value=8.6e-10 Score=111.26 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=94.2
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhC-CCceEEEECCCccCCchhcccCchhHHHHh-cCCCceeeecChhh---hh
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLEML-DGRGHIVKWAPQQE---VL 348 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~vp~~~---lL 348 (461)
+..+++..|+... ...+..++++++.. +.+++++. .+. ..+.+.+.. ..++.+.+++++.+ ++
T Consensus 262 ~~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG-~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~ 329 (465)
T PLN02871 262 EKPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVG-DGP---------YREELEKMFAGTPTVFTGMLQGDELSQAY 329 (465)
T ss_pred CCeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEe-CCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHH
Confidence 3445666787663 34466677777765 45554443 321 112222221 24567789998654 78
Q ss_pred cCCCCCccccccC----chHHHHHhhcCCccccCcccchhhhhHHHHHH---hhhceeecCCccCHHHHHHHHHHHhcch
Q 012543 349 AHPATGAFWTHCG----WNSTLESMCEGVPMICQPCHGEQMVIARYVSD---VWKVGLHLERKLERGEVERAIRRVMVDA 421 (461)
Q Consensus 349 ~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~lG~G~~l~~~~~~~~l~~~i~~ll~~~ 421 (461)
..+|+ +|.-.. -.++.|||++|+|+|+.... .....+++ . +.|...+. -+.+++.++|.++++|+
T Consensus 330 ~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 330 ASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLADP 401 (465)
T ss_pred HHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhCH
Confidence 88998 774432 34789999999999987643 23344444 4 67877764 57899999999999983
Q ss_pred h-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012543 422 E-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLIS 456 (461)
Q Consensus 422 ~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 456 (461)
+ ...+.+++++..++ -+-+...+.+.+
T Consensus 402 ~~~~~~~~~a~~~~~~--------fsw~~~a~~l~~ 429 (465)
T PLN02871 402 ELRERMGAAAREEVEK--------WDWRAATRKLRN 429 (465)
T ss_pred HHHHHHHHHHHHHHHh--------CCHHHHHHHHHH
Confidence 3 23344444443322 334555555554
No 46
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=2.3e-09 Score=104.93 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=77.4
Q ss_pred CCCceeeecCh-hhhhcCCCCCcccc----ccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 334 GRGHIVKWAPQ-QEVLAHPATGAFWT----HCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 334 ~~~~~~~~vp~-~~lL~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
+++.+.++.++ ..++..+++ +|. -|.-.++.||+++|+|+|+.. ....+..+++. ..|...+. -+.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~-~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDV-GDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCC-CCHH
Confidence 45677777765 448889998 662 233459999999999999864 34566677663 57766654 5789
Q ss_pred HHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 409 EVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 409 ~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
++.+++.++++|++ ...+++++++. +.+.-+.+..++.+.+.++++
T Consensus 325 ~l~~~i~~l~~~~~~~~~~~~~~~~~-------~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 325 AMAEYALSLLEDDELWQEFSRAARNR-------AAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999832 22334444433 224456778888888877653
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.31 E-value=2.9e-09 Score=103.09 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=80.6
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHhC---CCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhh---
Q 012543 273 PKSVIYVSFGSIAAIDETKFLEVAWGLANS---KVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQE--- 346 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~--- 346 (461)
.++.+++..|+... ......++++++.. +.+++++ +.+... ...........++.+.+++++.+
T Consensus 189 ~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~-------~~~~~~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 189 GGRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGLEL-------EEESYELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CCceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCchhh-------hHHHHhhcCCCeEEEeCCCCHHHHHH
Confidence 45567777888664 22233344444332 4554444 332210 00000001235667889997655
Q ss_pred hhcCCCCCcccc----ccC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 347 VLAHPATGAFWT----HCG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 lL~~~~~~~~I~----HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
++..+++ +|+ ..| ..++.||+++|+|+|+.+. ..+...+++. +.|...+. -+.+++.+++.++++|
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDD 329 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhC
Confidence 6888998 663 233 4479999999999998754 3456666663 57877765 4689999999999998
No 48
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.28 E-value=2.6e-13 Score=113.26 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=76.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCC--CCCCcCCcccHHHHHHH--HHHH
Q 012543 17 LILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDG--LSETEASTTDFVALISV--LHVK 92 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~ 92 (461)
|+|++.|+.||++|+++||++|++|||+|++++++...... ...|++|.+++.. ++........+...... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v-~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV-EAAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEE 79 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH-HHTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc-cccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhH
Confidence 68999999999999999999999999999999986433332 4479999999855 11000000111111111 1111
Q ss_pred cchhHHHHHHHH-hhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEeccc
Q 012543 93 CAAPFQDCLAKL-LSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLS 146 (461)
Q Consensus 93 ~~~~~~~~~~~l-~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~ 146 (461)
+...+.+...+. ....+ ...+|+++.+.....+..+||+++||.+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 80 AMRILARFRPDLVVAAGG---YVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHCCCCHCTT---TTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred HHHHhhccCcchhhhccC---cccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 111222211111 11111 1457888888777889999999999999987663
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=3.3e-10 Score=100.31 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=105.0
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecCh-hhhhcCCC
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQ-QEVLAHPA 352 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~-~~lL~~~~ 352 (461)
+.-|+|++|... +....-.++..+.+.++.+-++++..... +..+++... ...|+.+.-.... ..++..|+
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p~----l~~l~k~~~--~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNPT----LKNLRKRAE--KYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCcc----hhHHHHHHh--hCCCeeeEecchhHHHHHHhcc
Confidence 556999999765 44566678888888776655555532110 233333332 1255555544444 44999999
Q ss_pred CCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHHHHHHHHH
Q 012543 353 TGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGREMRNRAAI 432 (461)
Q Consensus 353 ~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 432 (461)
+ .|+-||. |+.|++.-|+|.+++|....|.-.|+..+. +|+-..++-.++......-+.++.+| ...|++.-.
T Consensus 230 ~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l~~ 302 (318)
T COG3980 230 L--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNLSF 302 (318)
T ss_pred h--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhhhh
Confidence 9 9999997 899999999999999999999999999998 69887776557788888888999999 555555443
Q ss_pred H
Q 012543 433 L 433 (461)
Q Consensus 433 l 433 (461)
-
T Consensus 303 ~ 303 (318)
T COG3980 303 G 303 (318)
T ss_pred c
Confidence 3
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.26 E-value=1.7e-08 Score=99.81 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCCceeeecChhh---hhcCCCCCcccc---ccCc-hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccC
Q 012543 334 GRGHIVKWAPQQE---VLAHPATGAFWT---HCGW-NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLE 406 (461)
Q Consensus 334 ~~~~~~~~vp~~~---lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 406 (461)
+++.+.+++|+.+ ++..+|+ +|. +.|. .++.|||++|+|+|+.. .......+++. ..|..++. -+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC-CC
Confidence 5678889999865 6778888 553 2232 48999999999999864 34556666653 56776654 57
Q ss_pred HHHHHHHHHHHhcc
Q 012543 407 RGEVERAIRRVMVD 420 (461)
Q Consensus 407 ~~~l~~~i~~ll~~ 420 (461)
++++.++|.++++|
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999999
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.26 E-value=9.4e-09 Score=102.07 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCcee-eecChhh---hhcCCCCCcccc-c------cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC
Q 012543 335 RGHIV-KWAPQQE---VLAHPATGAFWT-H------CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 335 ~~~~~-~~vp~~~---lL~~~~~~~~I~-H------GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~ 403 (461)
++.+. +|+|..+ +|..+|+ ++. + |--.++.|||++|+|+|+... ......+++. +.|....
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~- 366 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG- 366 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC-
Confidence 33433 6888655 6888998 662 1 124479999999999998643 3555677774 7787763
Q ss_pred ccCHHHHHHHHHHHhcc---hh-HHHHHHHHHHHH
Q 012543 404 KLERGEVERAIRRVMVD---AE-GREMRNRAAILK 434 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll~~---~~-~~~~~~~a~~l~ 434 (461)
+.+++.++|.++++| ++ ...+++++++..
T Consensus 367 --d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 --DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred --CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 789999999999998 44 455666666554
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.25 E-value=4.8e-09 Score=102.54 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCeEEEEEcccccc-CCHHHHHHHHHHHHhC-CCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhh---h
Q 012543 273 PKSVIYVSFGSIAA-IDETKFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQE---V 347 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~---l 347 (461)
.++.+++..|+... ...+.+...+..+... +.++++ ++.+.. ...+.+.+......|+.+.+++++.+ +
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~-----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 291 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGPE-----KEELKELAKALGLDNVTFLGRVPKEELPEL 291 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCccc-----HHHHHHHHHHcCCCcEEEeCCCChHHHHHH
Confidence 45677777888664 2333333333444333 344433 333210 11111111112235678889998755 6
Q ss_pred hcCCCCCccccccC---------chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHh
Q 012543 348 LAHPATGAFWTHCG---------WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVM 418 (461)
Q Consensus 348 L~~~~~~~~I~HGG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll 418 (461)
+..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+... +.|...+. -+.+++.++|.+++
T Consensus 292 ~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~~-~~~~~l~~~i~~~~ 363 (394)
T cd03794 292 LAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEA-GAGLVVPP-GDPEALAAAILELL 363 (394)
T ss_pred HHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccC-CcceEeCC-CCHHHHHHHHHHHH
Confidence 788888 664322 334799999999999987765443 33332 56666654 47899999999999
Q ss_pred cc
Q 012543 419 VD 420 (461)
Q Consensus 419 ~~ 420 (461)
+|
T Consensus 364 ~~ 365 (394)
T cd03794 364 DD 365 (394)
T ss_pred hC
Confidence 88
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.25 E-value=1.8e-08 Score=97.96 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=65.7
Q ss_pred cCCCceeeecChhh---hhcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
.+++.+.+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+... ...+..+++. +.|...+. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-C
Confidence 35678889998765 6888998 6633 335789999999999998653 4456667763 77877765 1
Q ss_pred CHHHHHHHHHHHhcchh-HHHHHHHHHHHHH
Q 012543 406 ERGEVERAIRRVMVDAE-GREMRNRAAILKE 435 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~ 435 (461)
+. ++.+++.++++|++ ...+.+++++..+
T Consensus 330 ~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 330 DE-ALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred CH-HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 22 89999999999832 2234444444444
No 54
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.24 E-value=3.5e-08 Score=98.12 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=94.4
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhC----CCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhh---
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANS----KVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQE--- 346 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~--- 346 (461)
++.+++..|+... ...+..++++++.. +.+++ +++.+.. ...+-+-..+..-.|+.+.+|+|+.+
T Consensus 228 ~~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~~-----~~~l~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 228 GKKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGGG-----KARLEKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred CCEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCChh-----HHHHHHHHHHcCCCceEEeCCCCHHHHHH
Confidence 4456667788763 33445555555543 23443 3333321 01111111111113677889998754
Q ss_pred hhcCCCCCccccccCc------hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 347 VLAHPATGAFWTHCGW------NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
++..+|+.++.+..+. +.+.|+|++|+|+|+....+.. ....++ +.|...+. -+.+++.++|.++++|
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAALARQ 373 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHHHHhC
Confidence 7888898444444332 2468999999999998654311 112222 45666654 5789999999999998
Q ss_pred hh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 421 AE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 421 ~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
++ ...+++++++..+ +.-+.+..++.+++.+++
T Consensus 374 ~~~~~~~~~~a~~~~~-------~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 374 ALLRPKLGTVAREYAE-------RTLDKENVLRQFIADIRG 407 (412)
T ss_pred HHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHH
Confidence 32 2344444444332 344567777777777665
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.22 E-value=2.9e-08 Score=95.98 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=76.9
Q ss_pred cCCCceeeecChhh---hhcCCCCCcccc----ccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWT----HCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
..++.+.+++++.+ ++..+++ +|+ -|..+++.||+++|+|+|+.+. ......+++. +.|...+. .
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~ 326 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-G 326 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-C
Confidence 45678889997544 7888998 663 3557799999999999998765 4566667753 77877765 5
Q ss_pred CHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 406 ERGEVERAIRRVMVDAEGREMRN-RAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~~~~~~~-~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
+.+++.++|.++++| +..++ ..+.-.+.+. +.-+.++..+++.+.+
T Consensus 327 ~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 327 DPEALAEAILRLLDD---PELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred CHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 689999999999998 33322 2222222232 4556777777776654
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.20 E-value=2.5e-08 Score=98.48 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCCceeeecChhh---hhcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccC
Q 012543 334 GRGHIVKWAPQQE---VLAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLE 406 (461)
Q Consensus 334 ~~~~~~~~vp~~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 406 (461)
.++.+.+|+|+.+ ++..+|+ +++. |-..++.||+++|+|+|+.... .....+++. +.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-~~ 354 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-RD 354 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC-CC
Confidence 5677889999866 5888998 7744 2235899999999999987644 355567763 78887765 57
Q ss_pred HHHHHHHHHHHhcc
Q 012543 407 RGEVERAIRRVMVD 420 (461)
Q Consensus 407 ~~~l~~~i~~ll~~ 420 (461)
.+++.++|.++++|
T Consensus 355 ~~~l~~~i~~l~~~ 368 (398)
T cd03800 355 PEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999998
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.18 E-value=2.4e-08 Score=96.27 Aligned_cols=315 Identities=13% Similarity=0.072 Sum_probs=161.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcch
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCAA 95 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (461)
||++++....|+......++++|.++||+|++++............++++..++.... ...........
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------ 69 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-----GINPFKDLKAL------ 69 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-----ccChHhHHHHH------
Confidence 4677766678899999999999999999999999864333222335677776653211 00111111111
Q ss_pred hHHHHHHHHhhcccccCCCCccEEEeCCCch--hhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCCCC
Q 012543 96 PFQDCLAKLLSNAEEKEEEPIACLITDASWF--FTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSHDL 173 (461)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~--~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 173 (461)
....+.+.+ .+||+|++..... .+..++...+.|.++.......... ..
T Consensus 70 --~~~~~~~~~-------~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------~~----- 120 (359)
T cd03808 70 --LRLYRLLRK-------ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF---------------TS----- 120 (359)
T ss_pred --HHHHHHHHh-------cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh---------------cc-----
Confidence 111222222 7799999885432 2344555466666664322110000 00
Q ss_pred cccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCC---CCccccCcCccCC
Q 012543 174 EAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFP---IPSFPIGPFHKYY 250 (461)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~~~~vG~~~~~~ 250 (461)
. ........... ......++.++..+....+.- ..... .....+.+.....
T Consensus 121 -~------------------~~~~~~~~~~~--~~~~~~~d~ii~~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 174 (359)
T cd03808 121 -G------------------GLKRRLYLLLE--RLALRFTDKVIFQNEDDRDLA-----LKLGIIKKKKTVLIPGSGVDL 174 (359)
T ss_pred -c------------------hhHHHHHHHHH--HHHHhhccEEEEcCHHHHHHH-----HHhcCCCcCceEEecCCCCCh
Confidence 0 00001111111 112235577777775554421 11111 1222222222111
Q ss_pred CCCcCCCccCcchhhhhcCCCCCCeEEEEEcccccc-CCHHHHHHHHHHHHh--CCCceEEEECCCccCCchhcccCchh
Q 012543 251 PASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAA-IDETKFLEVAWGLAN--SKVPFLWVVRPGLVRGAEWIELLPRG 327 (461)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~lp~~ 327 (461)
.. ..+... . ...++.+++..|+... ...+.+...+..+.+ .+.+++++..+..... ....
T Consensus 175 ~~----~~~~~~---~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~------~~~~ 237 (359)
T cd03808 175 DR----FSPSPE---P----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENP------AAIL 237 (359)
T ss_pred hh----cCcccc---c----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchh------hHHH
Confidence 11 000010 0 1245678888888664 333334444444443 2334433333221100 0000
Q ss_pred -HHH-HhcCCCceeeecCh-hhhhcCCCCCccccccC----chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceee
Q 012543 328 -FLE-MLDGRGHIVKWAPQ-QEVLAHPATGAFWTHCG----WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLH 400 (461)
Q Consensus 328 -~~~-~~~~~~~~~~~vp~-~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~ 400 (461)
+.+ ....++.+.++..+ ..++..+++ +|.-+. .+++.||+++|+|+|+.+.. .....+++. +.|..
T Consensus 238 ~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~ 310 (359)
T cd03808 238 EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFL 310 (359)
T ss_pred HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEE
Confidence 111 12345566676444 458899998 775433 57899999999999986543 345566653 67876
Q ss_pred cCCccCHHHHHHHHHHHhcch
Q 012543 401 LERKLERGEVERAIRRVMVDA 421 (461)
Q Consensus 401 l~~~~~~~~l~~~i~~ll~~~ 421 (461)
.+. -+.+++.++|.++++|+
T Consensus 311 ~~~-~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 311 VPP-GDAEALADAIERLIEDP 330 (359)
T ss_pred ECC-CCHHHHHHHHHHHHhCH
Confidence 654 57899999999999983
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.18 E-value=1.1e-08 Score=102.22 Aligned_cols=104 Identities=14% Similarity=0.211 Sum_probs=70.2
Q ss_pred hhhhcCCCCCccccc-----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhc
Q 012543 345 QEVLAHPATGAFWTH-----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMV 419 (461)
Q Consensus 345 ~~lL~~~~~~~~I~H-----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~ 419 (461)
..++..+|+ ++.. ||..++.||+++|+|+|+-|..+++......+.+. |.++.. -+.+++.++|.++++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHHHHHHHHHHhc
Confidence 347788887 4331 33346999999999999999888888887777663 766553 368999999999999
Q ss_pred chh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 420 DAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 420 ~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
|++ ...+.+++++..+. ..+...+.++.+.+.|++
T Consensus 388 ~~~~~~~m~~~a~~~~~~------~~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 388 DPDARQAYGEAGVAFLKQ------NQGALQRTLQLLEPYLPP 423 (425)
T ss_pred CHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHhccc
Confidence 832 23344444433322 235556666666666554
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.16 E-value=6.8e-08 Score=94.07 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=77.1
Q ss_pred cCCCceeeecC-hh---hhhcCCCCCcccccc----CchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCc
Q 012543 333 DGRGHIVKWAP-QQ---EVLAHPATGAFWTHC----GWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERK 404 (461)
Q Consensus 333 ~~~~~~~~~vp-~~---~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 404 (461)
..++.+.+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-
Confidence 34556778988 43 36888998 77643 357999999999999976542 333445542 56766654
Q ss_pred cCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 405 LERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 405 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
.+.+++.+++.++++| +..+ .++++..++...+.-+.++..+++.+.++++
T Consensus 315 ~~~~~~~~~l~~l~~~---~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 315 GDPEDLAEGIEWLLAD---PDER---EELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred CCHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 5789999999999998 3322 2222333322335567788888888887764
No 60
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.13 E-value=6.4e-09 Score=98.23 Aligned_cols=300 Identities=14% Similarity=0.125 Sum_probs=158.9
Q ss_pred CeEEE-EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHH
Q 012543 15 RRLIL-FPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS-PNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVK 92 (461)
Q Consensus 15 ~~il~-~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
|||.+ +..|. |+.-+-.++++|.++||+|.+.+-++.. ....+..|+.++.+...-. ....+......
T Consensus 1 MkIwiDi~~p~--hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~------~~~~Kl~~~~~-- 70 (335)
T PF04007_consen 1 MKIWIDITHPA--HVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGD------SLYGKLLESIE-- 70 (335)
T ss_pred CeEEEECCCch--HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCC------CHHHHHHHHHH--
Confidence 45655 44444 9999999999999999999998886443 2233457899998864211 11112222221
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSHD 172 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (461)
...++++.+.+ ++||++|+- .+..+..+|..+|+|+|.+.-....... +....|...
T Consensus 71 ---R~~~l~~~~~~-------~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~---------~~Lt~Pla~--- 127 (335)
T PF04007_consen 71 ---RQYKLLKLIKK-------FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ---------NRLTLPLAD--- 127 (335)
T ss_pred ---HHHHHHHHHHh-------hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc---------ceeehhcCC---
Confidence 12234444443 789999975 6677888999999999998765221110 011111111
Q ss_pred CcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEE-EcChhHhhHHHHHHHHhhCCCCccccCcCccCCC
Q 012543 173 LEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCI-WNSVQELEQDSLAKFHREFPIPSFPIGPFHKYYP 251 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~~~~~ 251 (461)
....+....... +...-.. ..+. ++...++ .|+-|+
T Consensus 128 ---------------~i~~P~~~~~~~------~~~~G~~-~~i~~y~G~~E~----------------ayl~~F----- 164 (335)
T PF04007_consen 128 ---------------VIITPEAIPKEF------LKRFGAK-NQIRTYNGYKEL----------------AYLHPF----- 164 (335)
T ss_pred ---------------eeECCcccCHHH------HHhcCCc-CCEEEECCeeeE----------------EeecCC-----
Confidence 000000000000 0000000 1111 2222222 222221
Q ss_pred CCcCCCccCcchhhhhcCCCCCCeEEEEEcccccc----CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchh
Q 012543 252 ASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAA----IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRG 327 (461)
Q Consensus 252 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~ 327 (461)
..+++..+-++. .+++.|++=+-+..+ .....+..+++.+++.+..+++..+...+ ..+-+.
T Consensus 165 -------~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~------~~~~~~ 230 (335)
T PF04007_consen 165 -------KPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ------RELFEK 230 (335)
T ss_pred -------CCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch------hhHHhc
Confidence 112223344442 245677776655333 23345667888898887664444333221 111111
Q ss_pred HHHHhcCCCce-eeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccC
Q 012543 328 FLEMLDGRGHI-VKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLE 406 (461)
Q Consensus 328 ~~~~~~~~~~~-~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 406 (461)
+ ++.+ ..-+...++|.++++ +|+-|| ....||..-|+|.|.+ +.++-...-+.+.+. |. +....+
T Consensus 231 ~------~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl---l~~~~~ 296 (335)
T PF04007_consen 231 Y------GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL---LYHSTD 296 (335)
T ss_pred c------CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC---eEecCC
Confidence 1 1222 244555689999999 999888 8999999999999975 223322333455553 65 222346
Q ss_pred HHHHHHHHHHHh
Q 012543 407 RGEVERAIRRVM 418 (461)
Q Consensus 407 ~~~l~~~i~~ll 418 (461)
.+++.+.+.+.+
T Consensus 297 ~~ei~~~v~~~~ 308 (335)
T PF04007_consen 297 PDEIVEYVRKNL 308 (335)
T ss_pred HHHHHHHHHHhh
Confidence 777777555443
No 61
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.11 E-value=2.9e-07 Score=89.19 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=76.8
Q ss_pred cCCCceeeecChhh---hhcCCCCCccc----cccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFW----THCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I----~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
..++.+.+++++.+ ++..+++ +| +-|..+++.||+++|+|+|+.+.. .....++.. +.|...+. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-G 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-C
Confidence 35678889998754 6788888 55 235567899999999999986543 345566663 66766664 6
Q ss_pred CHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 406 ERGEVERAIRRVMVDAEGRE---MRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~~~~---~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
+.+++.++|.+++++ +. .+++.+... +.-+.+...+++.+.++++
T Consensus 330 ~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 330 DPEALAEAILRLLAD---PWLRLGRAARRRVA--------ERFSWENVAERLLELYREV 377 (377)
T ss_pred CHHHHHHHHHHHhcC---cHHHHhHHHHHHHH--------HHhhHHHHHHHHHHHHhhC
Confidence 899999999999999 44 222233333 3334667778888777654
No 62
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.09 E-value=2.4e-07 Score=91.88 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCCceeeecChhh---hhcCCCCCcccc---ccC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccC
Q 012543 334 GRGHIVKWAPQQE---VLAHPATGAFWT---HCG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLE 406 (461)
Q Consensus 334 ~~~~~~~~vp~~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 406 (461)
.++.+.+++|..+ +|..+|+ +|. +.| -.++.||+++|+|+|+.... .....+++. +.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-HD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC-CC
Confidence 5678889988754 7889998 663 233 35899999999999987543 344566663 67877664 57
Q ss_pred HHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 407 RGEVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 407 ~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
.+++.++|.++++|++ ...+++++++..+ .-+-++.++++++.+.
T Consensus 355 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--------~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 355 PADWADALARLLDDPRTRIRMGAAAVEHAA--------GFSWAATADGLLSSYR 400 (405)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHH
Confidence 8999999999999832 2334444443332 2345666666666554
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.07 E-value=2.3e-07 Score=89.01 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCCceeeecCh-hhhhcCCCCCcccccc----CchHHHHHhhcCCccccCcccchhhhhHHHHHHhhh-ceeecCCccCH
Q 012543 334 GRGHIVKWAPQ-QEVLAHPATGAFWTHC----GWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWK-VGLHLERKLER 407 (461)
Q Consensus 334 ~~~~~~~~vp~-~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~l~~~~~~ 407 (461)
.++.+.++... ..++..+++ +|.-. .-+++.||+++|+|+|+.+..+.+. .+... | .|...+. .+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~-~~~ 306 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN-GDV 306 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC-CCH
Confidence 34455565333 458888998 66554 2568999999999999876544332 22232 4 7777764 578
Q ss_pred HHHHHHHHHHhcchh-HHHHHHHHHHHHH
Q 012543 408 GEVERAIRRVMVDAE-GREMRNRAAILKE 435 (461)
Q Consensus 408 ~~l~~~i~~ll~~~~-~~~~~~~a~~l~~ 435 (461)
+++.++|.++++|++ ...++++++++.+
T Consensus 307 ~~~~~~i~~ll~~~~~~~~~~~~~~~~~~ 335 (348)
T cd03820 307 EALAEALLRLMEDEELRKRMGANARESAE 335 (348)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 999999999999933 2334444444333
No 64
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.06 E-value=1.4e-07 Score=93.34 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=69.4
Q ss_pred cCCCceeeecChhh---hhcCCCCCcccc---ccCch-HHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWT---HCGWN-STLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
.+++.+.+|+|+.+ +++.+|+ +|. +-|.| ++.|||++|+|+|+.+..+ ....+.+ |.+.... .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--P 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--C
Confidence 35677889998654 7788998 653 33444 9999999999999977643 2334444 4343332 3
Q ss_pred CHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 406 ERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
+.+++.+++.+++++.. -++ .+.+..++.+.+.-+-++.++++++.+++
T Consensus 319 ~~~~l~~~l~~~l~~~~---~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 319 DVESIVRKLEEAISILR---TGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred CHHHHHHHHHHHHhChh---hhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 78999999999998721 110 11122222222455566666666665543
No 65
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.04 E-value=2.6e-09 Score=104.29 Aligned_cols=159 Identities=15% Similarity=0.123 Sum_probs=95.3
Q ss_pred CCeEEEEEccccccC-CHHHHHHHHHHHHhCCC-ceEEEECCCccCCchhcccCchhHHHHh--cCCCceeeecChh---
Q 012543 273 PKSVIYVSFGSIAAI-DETKFLEVAWGLANSKV-PFLWVVRPGLVRGAEWIELLPRGFLEML--DGRGHIVKWAPQQ--- 345 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vp~~--- 345 (461)
+++.|++++|..... ....+..++++++.... ++.++..++. .. ...+.+...+.. ..++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-~~---~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-RT---RPRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-Ch---HHHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 466788888876542 35567778888776533 2444443321 10 011222111111 3456666655543
Q ss_pred hhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHH
Q 012543 346 EVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGRE 425 (461)
Q Consensus 346 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~ 425 (461)
.++..+|+ +|+.+| |.+.||++.|+|+|+++.. |. +..+.+. |++..+.. +.++|.++|.+++++ +.
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~--~~~~i~~~i~~ll~~---~~ 339 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT--DPEAILAAIEKLLSD---EF 339 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC--CHHHHHHHHHHHhcC---ch
Confidence 46778998 999999 8888999999999998743 22 2233443 77755542 689999999999998 43
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 426 MRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 426 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
.+++ ++ . +..+.-++.+.+++.|
T Consensus 340 ~~~~---~~---~----~~~~~~~a~~~I~~~l 362 (363)
T cd03786 340 AYSL---MS---I----NPYGDGNASERIVEIL 362 (363)
T ss_pred hhhc---CC---C----CCCCCCHHHHHHHHHh
Confidence 3332 22 2 3444445666666554
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.04 E-value=2.5e-07 Score=89.84 Aligned_cols=146 Identities=18% Similarity=0.119 Sum_probs=87.9
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhCC-CceEEEECCCccCCchhcccCchhH-HHHhcCCCceeeecChhh---hh
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANSK-VPFLWVVRPGLVRGAEWIELLPRGF-LEMLDGRGHIVKWAPQQE---VL 348 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~~vp~~~---lL 348 (461)
++.+++..|+... ...+..+++++++.. .+++++..+.. ...+..-. ......|+.+.+|+|+.+ ++
T Consensus 190 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~------~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~ 261 (357)
T cd03795 190 GRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPL------EAELEALAAALGLLDRVRFLGRLDDEEKAALL 261 (357)
T ss_pred CCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChh------HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHH
Confidence 4557777887653 344556777777765 44444433221 01111111 112246778889999754 77
Q ss_pred cCCCCCcccc---ccCch-HHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchh-H
Q 012543 349 AHPATGAFWT---HCGWN-STLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAE-G 423 (461)
Q Consensus 349 ~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~-~ 423 (461)
..+++-++-+ +.|.| ++.||+++|+|+|+....+....... .. +.|...+. -+.+++.++|.++++|++ .
T Consensus 262 ~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-~d~~~~~~~i~~l~~~~~~~ 336 (357)
T cd03795 262 AACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-GDPAALAEAIRRLLEDPELR 336 (357)
T ss_pred HhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-CCHHHHHHHHHHHHHCHHHH
Confidence 7888833223 23433 79999999999999765544433222 23 67766654 579999999999999932 2
Q ss_pred HHHHHHHHH
Q 012543 424 REMRNRAAI 432 (461)
Q Consensus 424 ~~~~~~a~~ 432 (461)
..+++++++
T Consensus 337 ~~~~~~~~~ 345 (357)
T cd03795 337 ERLGEAARE 345 (357)
T ss_pred HHHHHHHHH
Confidence 334444443
No 67
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.03 E-value=5.2e-07 Score=95.95 Aligned_cols=398 Identities=13% Similarity=0.083 Sum_probs=195.2
Q ss_pred CCCeEEEEcCCC---------------ccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C-----------
Q 012543 13 KGRRLILFPLPF---------------QGHINPMLQLANILYSKG--FSITIIHTKFNSPN-------P----------- 57 (461)
Q Consensus 13 ~~~~il~~~~~~---------------~GHi~p~l~La~~L~~rG--h~V~~~~~~~~~~~-------~----------- 57 (461)
+++.|+++...+ .|+.-=.+.||++|+++| |+|.++|-....+. .
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 577887765432 235555689999999998 89999987532111 0
Q ss_pred -----CCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCc--hhhHH
Q 012543 58 -----SNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASW--FFTHD 130 (461)
Q Consensus 58 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~--~~a~~ 130 (461)
...+|+..+.+|-+..+.......+...+..|.+.+...+.++.+.+.+.....+...||+|-+.... ..|..
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~ 327 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAAL 327 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHH
Confidence 01247777777755443333334444555555554444333322222221000000359999998533 55677
Q ss_pred HHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhc
Q 012543 131 VAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQM 210 (461)
Q Consensus 131 ~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (461)
+++.+|||+|.+..+........ ....+..+. ..+ .....+...+..-...+
T Consensus 328 L~~~lgVP~V~T~HSLgr~K~~~-----ll~~g~~~~------------------~~~-----~~~y~~~~Ri~~Ee~~l 379 (1050)
T TIGR02468 328 LSGALNVPMVLTGHSLGRDKLEQ-----LLKQGRMSK------------------EEI-----NSTYKIMRRIEAEELSL 379 (1050)
T ss_pred HHHhhCCCEEEECccchhhhhhh-----hcccccccc------------------ccc-----ccccchHHHHHHHHHHH
Confidence 89999999998776621000000 000000000 000 00000001111112234
Q ss_pred cCccEEEEcChhHhhHHHHHHH--Hhh------------------CCCC--ccccCc----CccCCCCCc----------
Q 012543 211 KASSGCIWNSVQELEQDSLAKF--HRE------------------FPIP--SFPIGP----FHKYYPASA---------- 254 (461)
Q Consensus 211 ~~~~~~l~~~~~~l~~~~~~~~--~~~------------------~~~~--~~~vG~----~~~~~~~~~---------- 254 (461)
..++.++.+|..+.+..+--|- .+. +.++ +++-|- +.+......
T Consensus 380 ~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~ 459 (1050)
T TIGR02468 380 DASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHP 459 (1050)
T ss_pred HhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhccccccc
Confidence 5778888888777764321110 000 0112 232231 111000000
Q ss_pred -CCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCC-----CceEEEECCCccCCc------hhcc
Q 012543 255 -SSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSK-----VPFLWVVRPGLVRGA------EWIE 322 (461)
Q Consensus 255 -~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~------~~~~ 322 (461)
....+.+.++..|+.. ++..++++.|.... ...+..+++|+..+. ..+.++++.+..... ....
T Consensus 460 ~~~~~~~~~~l~r~~~~--pdkpvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~ 535 (1050)
T TIGR02468 460 AKPDPPIWSEIMRFFTN--PRKPMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLT 535 (1050)
T ss_pred ccccchhhHHHHhhccc--CCCcEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHH
Confidence 0000112235566654 33345566677663 333455566655432 234344443211000 0000
Q ss_pred cCchhHHHH--hcCCCceeeecChhh---hhcCC----CCCccccc---cC-chHHHHHhhcCCccccCcccchhhhhHH
Q 012543 323 LLPRGFLEM--LDGRGHIVKWAPQQE---VLAHP----ATGAFWTH---CG-WNSTLESMCEGVPMICQPCHGEQMVIAR 389 (461)
Q Consensus 323 ~lp~~~~~~--~~~~~~~~~~vp~~~---lL~~~----~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~ 389 (461)
.+-. ..++ +.+++.+.+++++.+ ++..+ ++ ||+- =| -.++.||+++|+|+|+....+ ...
T Consensus 536 ~L~~-li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~E 608 (1050)
T TIGR02468 536 SVLK-LIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVD 608 (1050)
T ss_pred HHHH-HHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHH
Confidence 1111 1111 236667778888765 55555 35 7764 23 348999999999999986533 334
Q ss_pred HHHHhhhceeecCCccCHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 390 YVSDVWKVGLHLERKLERGEVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 390 ~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
.++.. .-|..++. -++++|.++|.++++|++ ...+.+++.+..+. -+-...++.+++.+.
T Consensus 609 II~~g-~nGlLVdP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~--------FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 609 IHRVL-DNGLLVDP-HDQQAIADALLKLVADKQLWAECRQNGLKNIHL--------FSWPEHCKTYLSRIA 669 (1050)
T ss_pred HhccC-CcEEEECC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHH
Confidence 45542 56777765 688999999999999933 23344444433322 344555555555443
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.98 E-value=8e-07 Score=87.69 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=63.0
Q ss_pred cCCCceeeecChhh---hhcCCCCCccccc---cC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTH---CG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
.+++.+.+++|..+ ++..+|+ ++.. -| -.++.||+++|+|+|+.-.. .....+.+. +.|.... .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~--~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE--P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC--C
Confidence 46778889999864 6888887 6632 22 35789999999999987543 334456653 5676654 3
Q ss_pred CHHHHHHHHHHHhcchh-HHHHHHHHHH
Q 012543 406 ERGEVERAIRRVMVDAE-GREMRNRAAI 432 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 432 (461)
+.+++.++|.++++|++ ...+.+++++
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999833 2334444443
No 69
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.97 E-value=8.5e-09 Score=100.77 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=90.6
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhC-----CCceEEEECCCccCCchhcccCchhHHHHh--cCCCceeeecChh-
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIELLPRGFLEML--DGRGHIVKWAPQQ- 345 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vp~~- 345 (461)
++.++++.+-... ....+..+++++..+ +.++++...++.. ....+.+.. ..++.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--------HHHHHHHHhCCCCCEEEECCCChHH
Confidence 4566666543221 113456667766553 3455554333210 111111211 2466777666654
Q ss_pred --hhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhH
Q 012543 346 --EVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEG 423 (461)
Q Consensus 346 --~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~ 423 (461)
.++..+++ +|+-.|.. +.||+++|+|+|.++..++++. .+ .. |.+..+. .++++|.+++.++++|
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~-~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV-EA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH-hc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 46788888 89877644 7999999999999976555542 22 33 7665553 4889999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012543 424 REMRNRAAILKEKLDLCTKQGSSSYQSLENLIS 456 (461)
Q Consensus 424 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 456 (461)
+..+++...-...+. +++++.+.++.|.+
T Consensus 335 ~~~~~~~~~~~~~~g----~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 335 PDEYKKMSNASNPYG----DGEASERIVEELLN 363 (365)
T ss_pred hHHHHHhhhcCCCCc----CchHHHHHHHHHHh
Confidence 555554433222222 44445555554444
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.97 E-value=1.3e-06 Score=84.90 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=56.2
Q ss_pred cCCCceeeecChhh---hhcCCCCCcccccc----CchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTHC----GWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
.+++.+.+|+++.+ ++..+++ +|.-. -..++.|||++|+|+|+.+.. .....+.. +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--
Confidence 35667889999654 5788888 55432 256899999999999997543 33444443 56665543
Q ss_pred CHHHHHHHHHHHhcc
Q 012543 406 ERGEVERAIRRVMVD 420 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~ 420 (461)
+.+++.++|.++++|
T Consensus 331 ~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 DVDALAAALRRALEL 345 (375)
T ss_pred ChHHHHHHHHHHHhC
Confidence 459999999999998
No 71
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.95 E-value=7.3e-07 Score=87.03 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=61.5
Q ss_pred cCCCceeeecChhh---hhcCCCCCccccc----------cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhcee
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTH----------CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGL 399 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H----------GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 399 (461)
..++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 45667779998755 5888888 6532 2356899999999999987654 366666664 7887
Q ss_pred ecCCccCHHHHHHHHHHHhcc
Q 012543 400 HLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 400 ~l~~~~~~~~l~~~i~~ll~~ 420 (461)
..+. -+.+++.++|.++++|
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcC
Confidence 7764 5789999999999998
No 72
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.95 E-value=1.3e-06 Score=87.45 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=73.2
Q ss_pred cCCCceeeecChhh---hhcCC----CCCcccccc---C-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeec
Q 012543 333 DGRGHIVKWAPQQE---VLAHP----ATGAFWTHC---G-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHL 401 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~----~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l 401 (461)
.+++.+.+++++.+ ++..+ |+ ||... | -.++.|||++|+|+|+.... .....+++. ..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEe
Confidence 45666677777665 46544 56 77643 3 35999999999999988543 355556653 567766
Q ss_pred CCccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 402 ERKLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 402 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
+. -+++++.++|.++++| +.. .+++++..++.+.+.-+-+..++.+.+.|
T Consensus 389 ~~-~d~~~la~~i~~ll~~---~~~---~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DV-LDLEAIASALEDALSD---SSQ---WQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-CCHHHHHHHHHHHHhC---HHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 64 5789999999999999 332 23344444433334555666666666554
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.94 E-value=8.7e-07 Score=86.08 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=71.0
Q ss_pred CCCcee-eecChh---hhhcCCCCCcccc----c--cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC
Q 012543 334 GRGHIV-KWAPQQ---EVLAHPATGAFWT----H--CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 334 ~~~~~~-~~vp~~---~lL~~~~~~~~I~----H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~ 403 (461)
.++.+. .|+|+. .++..+++ +|. - |..+++.||+++|+|+|+.+..+ ...+... +.|.....
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC
Confidence 455666 458864 47788888 662 2 44568999999999999987654 2334443 67766654
Q ss_pred ccCHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 404 KLERGEVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
-+.+++.+++.++++|.+ ...+.+++++..+ + -+.++.++++.+.+
T Consensus 319 -~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~-~s~~~~~~~~~~~~ 365 (366)
T cd03822 319 -GDPAALAEAIRRLLADPELAQALRARAREYAR-------A-MSWERVAERYLRLL 365 (366)
T ss_pred -CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh-------h-CCHHHHHHHHHHHh
Confidence 468999999999999832 2334444444333 3 45666666666554
No 74
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.87 E-value=2e-06 Score=83.39 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=84.3
Q ss_pred CCeEEEEEcccccc-CCHHHHHHHHHHHHhC--CCceEEEECCCccCCchhcccCchhHH----H-HhcCCCceeeecCh
Q 012543 273 PKSVIYVSFGSIAA-IDETKFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIELLPRGFL----E-MLDGRGHIVKWAPQ 344 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~----~-~~~~~~~~~~~vp~ 344 (461)
++..+++..|.... ...+.+..++..+... +.+++++-.+.. . ..+...+. + ...+++.+.+|.+.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~-~-----~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQG-R-----RFYYAELLELIKRLGLQDRVTFVGHCSD 256 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcc-c-----chHHHHHHHHHHHcCCcceEEEcCCccc
Confidence 35567777787654 3344444445555442 344433333221 0 11111111 1 12355677787544
Q ss_pred -hhhhcCCCCCccccc----cC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHh
Q 012543 345 -QEVLAHPATGAFWTH----CG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVM 418 (461)
Q Consensus 345 -~~lL~~~~~~~~I~H----GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll 418 (461)
..++..+|+ +|+- -| ..++.||+++|+|+|+... ......+.+. +.|...+. -+.+++.++|..++
T Consensus 257 ~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-~~~~~l~~~i~~~~ 328 (355)
T cd03819 257 MPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-GDAEALAQALDQIL 328 (355)
T ss_pred HHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-CCHHHHHHHHHHHH
Confidence 448888998 5532 23 3599999999999998753 3345566653 57777764 68899999997665
Q ss_pred c-chh-HHHHHHHHHHHHH
Q 012543 419 V-DAE-GREMRNRAAILKE 435 (461)
Q Consensus 419 ~-~~~-~~~~~~~a~~l~~ 435 (461)
. |++ ...+++++++..+
T Consensus 329 ~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 329 SLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred hhCHHHHHHHHHHHHHHHH
Confidence 4 422 3345555544443
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.86 E-value=1.8e-06 Score=83.06 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=92.3
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHH--hcCCCceeeecChhh---hhcC
Q 012543 276 VIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEM--LDGRGHIVKWAPQQE---VLAH 350 (461)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vp~~~---lL~~ 350 (461)
.+++..|.... ......+++++++.+.+++++..+... ..+-....+. ..+++.+.+++++.+ ++..
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDP------DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCH------HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 34555677643 334456777888877776655444221 1111111112 246778889999854 6888
Q ss_pred CCCCcccc--ccCc-hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHHHH
Q 012543 351 PATGAFWT--HCGW-NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGREMR 427 (461)
Q Consensus 351 ~~~~~~I~--HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~ 427 (461)
+++-++-+ +-|. .++.|||++|+|+|+.... .+...+++. ..|...+. .+++.+++.++++. . +
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~---~--~ 310 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVDS---VEELAAAVARADRL---D--R 310 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc---H--H
Confidence 88822222 2343 4899999999999987543 344555542 36766543 89999999998766 2 2
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 428 NRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 428 ~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
+++++. .. +.-+.+..++++++.+
T Consensus 311 ~~~~~~---~~----~~~s~~~~~~~~~~~y 334 (335)
T cd03802 311 AACRRR---AE----RRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHH---HH----HhCCHHHHHHHHHHHh
Confidence 233222 11 4455777777766654
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.85 E-value=1.8e-06 Score=83.82 Aligned_cols=110 Identities=11% Similarity=0.082 Sum_probs=69.7
Q ss_pred CCCceeeecCh-hhhhcCCCCCcccccc----CchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 334 GRGHIVKWAPQ-QEVLAHPATGAFWTHC----GWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 334 ~~~~~~~~vp~-~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
.|+.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+++ .|... .. -+.+
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~--~~-~~~~ 314 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIV--PI-SDPE 314 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEe--CC-CCHH
Confidence 45677777655 458899998 55532 256899999999999874 44555566665 35543 32 5788
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 409 EVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 409 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
++.++|.++++++ +.+++...+-++.+. +.-+.+...+.+.+.++
T Consensus 315 ~~~~~i~~ll~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 315 ALANKIDEILKMS--GEERDIIGARRERIV----KKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHhh
Confidence 9999999998431 344433332233333 44556666666665543
No 77
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.85 E-value=1e-06 Score=84.68 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=56.4
Q ss_pred CCCceeeecCh-hhhhcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 334 GRGHIVKWAPQ-QEVLAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 334 ~~~~~~~~vp~-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
.++.+.++.+. ..++..+++ +|.- |.-+++.||+++|+|+|+.... .....+++. +.|...+. -+.+
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~~ 317 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-GDEA 317 (353)
T ss_pred ccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-CCHH
Confidence 45677777765 458889998 6632 3356899999999999986443 556777774 78887765 4666
Q ss_pred HH---HHHHHHHhcc
Q 012543 409 EV---ERAIRRVMVD 420 (461)
Q Consensus 409 ~l---~~~i~~ll~~ 420 (461)
.+ .+.+.+++++
T Consensus 318 ~~~~~~~~i~~~~~~ 332 (353)
T cd03811 318 ALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHhccCC
Confidence 66 6667777777
No 78
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.85 E-value=3.1e-07 Score=87.66 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=99.6
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhCCCc-eEEEECCCccCCchhcccCchhHHHHhcCCCceeeec-ChhhhhcCC
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANSKVP-FLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWA-PQQEVLAHP 351 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~v-p~~~lL~~~ 351 (461)
+++|.+-.||..+.-...+..++++.+.+..+ ..+++.... . . +.+.+..... ....++ .-.+++..+
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-------~-~-~~i~~~~~~~-~~~~~~~~~~~~m~~a 236 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-------K-G-KDLKEIYGDI-SEFEISYDTHKALLEA 236 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-------c-H-HHHHHHHhcC-CCcEEeccHHHHHHhh
Confidence 47899999998763335555555655544322 223332221 0 0 1222211110 111222 235689999
Q ss_pred CCCccccccCchHHHHHhhcCCccccCcc--cchhhhhHHHHH---Hhhhceeec-------------CC-ccCHHHHHH
Q 012543 352 ATGAFWTHCGWNSTLESMCEGVPMICQPC--HGEQMVIARYVS---DVWKVGLHL-------------ER-KLERGEVER 412 (461)
Q Consensus 352 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~--~~DQ~~na~~v~---~~lG~G~~l-------------~~-~~~~~~l~~ 412 (461)
|+ +|+-+|..|+ |++..|+|+|+ +. ..-|..||+++. . .|+...+ .. +.|++.|.+
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 99 9999999999 99999999988 43 457899999998 5 3655444 11 588999999
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012543 413 AIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLIS 456 (461)
Q Consensus 413 ~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 456 (461)
.+.+ ... ..+++...++.+.+. . ++++++.+.+.+
T Consensus 312 ~i~~-~~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i~~ 346 (347)
T PRK14089 312 AYKE-MDR---EKFFKKSKELREYLK----H-GSAKNVAKILKE 346 (347)
T ss_pred HHHH-HHH---HHHHHHHHHHHHHhc----C-CHHHHHHHHHhc
Confidence 9987 222 466777777766664 3 667776665543
No 79
>PLN02275 transferase, transferring glycosyl groups
Probab=98.82 E-value=4.8e-06 Score=81.50 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=53.0
Q ss_pred CCcee-eecChhh---hhcCCCCCcccc-c-----cC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC
Q 012543 335 RGHIV-KWAPQQE---VLAHPATGAFWT-H-----CG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 335 ~~~~~-~~vp~~~---lL~~~~~~~~I~-H-----GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~ 403 (461)
|+.+. .|+|..+ +|..+|+ +|. + -| -+++.||+++|+|+|+... ..+...+++. +.|...+
T Consensus 287 ~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~- 358 (371)
T PLN02275 287 HVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS- 358 (371)
T ss_pred ceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC-
Confidence 34544 4788766 5889998 663 1 12 3479999999999999753 2366777764 6788775
Q ss_pred ccCHHHHHHHHHHHh
Q 012543 404 KLERGEVERAIRRVM 418 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll 418 (461)
+++++.++|.+++
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 4788999988875
No 80
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.81 E-value=3.3e-06 Score=81.80 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=59.9
Q ss_pred cCCCceeeecChhh---hhcCCCCCcccc----------ccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhcee
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWT----------HCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGL 399 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~----------HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 399 (461)
++++.+.+++|+.+ ++..+++ +|. -|.-+++.||+++|+|+|+.+.. .....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 45678889998654 7778888 555 23357899999999999987643 233455552 4777
Q ss_pred ecCCccCHHHHHHHHHHHhcch
Q 012543 400 HLERKLERGEVERAIRRVMVDA 421 (461)
Q Consensus 400 ~l~~~~~~~~l~~~i~~ll~~~ 421 (461)
..+. -+.+++.++|.++++|+
T Consensus 308 ~~~~-~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 308 LVPP-GDPEALADAIERLLDDP 328 (355)
T ss_pred EeCC-CCHHHHHHHHHHHHhCH
Confidence 7654 48899999999999983
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.81 E-value=7.2e-06 Score=79.22 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=69.2
Q ss_pred CCCceeeecCh-hhhhcCCCCCccccccC----chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 334 GRGHIVKWAPQ-QEVLAHPATGAFWTHCG----WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 334 ~~~~~~~~vp~-~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
.++.+.+.... ..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|...+. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-CCHH
Confidence 34444454443 458889998 776544 4799999999999998543 344555544 3434443 4689
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 409 EVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 409 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
++.++|.++++| +. ..+++++..++...+.-+..+.++.+.+.+
T Consensus 321 ~l~~~i~~l~~~---~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLAD---PA---LRQALGEAARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhC---hH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999998 32 223333333333335566777777776654
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.79 E-value=9.2e-06 Score=79.00 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=85.7
Q ss_pred EEEccccccCCHHHHHHHHHHHHhCC--CceEEEECCCccCCchhcccCchhHH--HHhcCCCceeeecChhh---hhcC
Q 012543 278 YVSFGSIAAIDETKFLEVAWGLANSK--VPFLWVVRPGLVRGAEWIELLPRGFL--EMLDGRGHIVKWAPQQE---VLAH 350 (461)
Q Consensus 278 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~~~~~vp~~~---lL~~ 350 (461)
++..|+... ...+..++++++... .+++++..+.. . ..+-+.+. ....+++.+.+++|+.+ ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~-~-----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADH-N-----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCC-c-----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 455787663 334555666666654 44443333211 1 11112222 12346678889999865 5666
Q ss_pred CCCCccccccCc-----hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHH
Q 012543 351 PATGAFWTHCGW-----NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGRE 425 (461)
Q Consensus 351 ~~~~~~I~HGG~-----gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~ 425 (461)
+++ ++-++-. +++.|||++|+|+|+....+. ...++.. |.. ... .+.+.++|.++++| +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~~-g~~--~~~---~~~l~~~i~~l~~~---~~ 332 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGDK-AIY--FKV---GDDLASLLEELEAD---PE 332 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecCC-eeE--ecC---chHHHHHHHHHHhC---HH
Confidence 776 5554332 479999999999998765422 2222221 322 222 12299999999998 32
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 426 MRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 426 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
.+ .++++..++...+.-+.+...+.+++.+
T Consensus 333 ~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 333 EV---SAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 22 2333333333334556777777777654
No 83
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.78 E-value=1.2e-06 Score=85.34 Aligned_cols=134 Identities=15% Similarity=0.111 Sum_probs=80.2
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhCC--CceEEEECCCccCCchhcccCchhHHH-HhcCCCceeeecCh--hh--
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANSK--VPFLWVVRPGLVRGAEWIELLPRGFLE-MLDGRGHIVKWAPQ--QE-- 346 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~vp~--~~-- 346 (461)
++.+++..|.........+..+++++.... .+++++-.+.. ...+-+...+ ..++++.+.+|+++ ..
T Consensus 179 ~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~------~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~ 252 (359)
T PRK09922 179 KPAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD------FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQ 252 (359)
T ss_pred CCcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc------HHHHHHHHHHcCCCCeEEEecccCCcHHHHH
Confidence 345667777764322334556666666543 34443333321 1112121111 12456788888754 22
Q ss_pred -hhcCCCCCccccc----cCchHHHHHhhcCCccccCc-ccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 347 -VLAHPATGAFWTH----CGWNSTLESMCEGVPMICQP-CHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 -lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+..+++ +|.. |--.++.|||++|+|+|+.- ..+ ....+++. ..|..++. -+.+++.++|.++++|
T Consensus 253 ~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 253 QKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-GNIDEFVGKLNKVISG 324 (359)
T ss_pred HHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-CCHHHHHHHHHHHHhC
Confidence 4556777 6643 33579999999999999875 322 22456653 56776654 6899999999999999
Q ss_pred h
Q 012543 421 A 421 (461)
Q Consensus 421 ~ 421 (461)
.
T Consensus 325 ~ 325 (359)
T PRK09922 325 E 325 (359)
T ss_pred c
Confidence 3
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.76 E-value=1.2e-05 Score=79.19 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhC--CCceEEEECCCccCCchhcccCchhHHHH---hc---CCCce-eeecCh
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIELLPRGFLEM---LD---GRGHI-VKWAPQ 344 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~---~~---~~~~~-~~~vp~ 344 (461)
+..+++..|.... ...+..++++++.. +.+++++.++... ..+-+.+.+. .. .++.+ .+++++
T Consensus 200 ~~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (388)
T TIGR02149 200 SRPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDT------PEVAEEVRQAVALLDRNRTGIIWINKMLPK 271 (388)
T ss_pred CceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCc------HHHHHHHHHHHHHhccccCceEEecCCCCH
Confidence 4456666777653 23455556666554 4455554443321 0011112111 11 22333 366776
Q ss_pred hh---hhcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-ccC----HHHHHH
Q 012543 345 QE---VLAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLE----RGEVER 412 (461)
Q Consensus 345 ~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~----~~~l~~ 412 (461)
.+ ++..+|+ +|.= |...++.||+++|+|+|+... ......+++. +.|..++. ..+ .+++.+
T Consensus 272 ~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 272 EELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHH
Confidence 44 7888998 6642 224577999999999998654 3456667663 67887765 221 289999
Q ss_pred HHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 413 AIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 413 ~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
+|.++++|++ ...+.+++++ ...+.-+.+...+.+.+.+++
T Consensus 345 ~i~~l~~~~~~~~~~~~~a~~-------~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 345 AINILLADPELAKKMGIAGRK-------RAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHhCHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHHHHh
Confidence 9999999832 1223333333 222445577777777777765
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.75 E-value=7.6e-06 Score=80.23 Aligned_cols=113 Identities=14% Similarity=0.038 Sum_probs=73.8
Q ss_pred CCCceeeecCh-hhhhcCCCCCcccc--c--cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 334 GRGHIVKWAPQ-QEVLAHPATGAFWT--H--CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 334 ~~~~~~~~vp~-~~lL~~~~~~~~I~--H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
.++++.++..+ ..++..+|+ +|. + |--.++.|||++|+|+|+.... .+...+++. ..|..++. -+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~-~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP-GDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-CCHH
Confidence 33455555443 458899998 663 2 4466999999999999997653 355566653 56766654 5789
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 409 EVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 409 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
++.++|.++++| +..++ ++++..++.+.+.-+.+..++++.+.+++
T Consensus 327 ~la~~i~~l~~~---~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 327 ALARALQPYVSD---PAARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999998 33222 22233332333455677777777777654
No 86
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.71 E-value=2.2e-06 Score=84.86 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=72.5
Q ss_pred CCCceeeecChh-hhhcCCCCCccc--cc--cCch-HHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCH
Q 012543 334 GRGHIVKWAPQQ-EVLAHPATGAFW--TH--CGWN-STLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLER 407 (461)
Q Consensus 334 ~~~~~~~~vp~~-~lL~~~~~~~~I--~H--GG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~ 407 (461)
.++.+.+++++. .++..+++ +| ++ .|.+ .+.|||++|+|+|+.+...+.. .+.. |.|..+. -++
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CCH
Confidence 556788999863 48889998 65 32 4544 6999999999999988643321 1222 5666554 489
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 408 GEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 408 ~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
+++.++|.++++| +..+ ++|++..++.+.+.-+-++.++.+.+.++
T Consensus 350 ~~la~ai~~ll~~---~~~~---~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 350 ADFAAAILALLAN---PAER---EELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHcC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999999 3322 22333333333345567777777766654
No 87
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.62 E-value=2e-05 Score=76.38 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=54.2
Q ss_pred cCCCceeeecChhh---hhcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
..++.+.+++|+.+ ++..+|+ +|.- |..+++.||+++|+|+|+....+ ....+.+ .|..+.. -
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~-~ 321 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP-L 321 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC-C
Confidence 46667889998764 6788887 5533 33558999999999999865422 2222333 2333333 4
Q ss_pred CHHHHHHHHHHHhcc
Q 012543 406 ERGEVERAIRRVMVD 420 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~ 420 (461)
+.+++.++|.++++|
T Consensus 322 ~~~~~~~~i~~l~~~ 336 (365)
T cd03809 322 DPEALAAAIERLLED 336 (365)
T ss_pred CHHHHHHHHHHHhcC
Confidence 789999999999999
No 88
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.61 E-value=4.1e-05 Score=75.84 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=80.2
Q ss_pred cCCCceeeecChhh---hhcCCCCCccccc---------cCc-hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhcee
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTH---------CGW-NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGL 399 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H---------GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 399 (461)
.+++.+.+|+|+.+ ++..+|+ +|.- -|. .++.|||++|+|+|+.... .....+++. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 45678889999865 7788998 6642 244 5789999999999987543 344566653 5676
Q ss_pred ecCCccCHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 400 HLERKLERGEVERAIRRVMV-DAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 400 ~l~~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
..+. -+.+++.++|.++++ | ++. .+++++..++.+.+.-+.+..++.+.+.++++
T Consensus 351 lv~~-~d~~~la~ai~~l~~~d---~~~---~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 351 LVPE-NDAQALAQRLAAFSQLD---TDE---LAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred EeCC-CCHHHHHHHHHHHHhCC---HHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 6654 589999999999999 8 322 22333333333335566888888888888764
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.60 E-value=0.00017 Score=75.49 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=51.2
Q ss_pred CCCceeeec-Ch---hhhhcC-CC-CCccccc---cC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC
Q 012543 334 GRGHIVKWA-PQ---QEVLAH-PA-TGAFWTH---CG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 334 ~~~~~~~~v-p~---~~lL~~-~~-~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~ 403 (461)
+++.+.++. +. .+++.. ++ .++||.= =| --++.||+++|+|+|+.-.. .....|++. .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC
Confidence 556666653 32 235542 22 1226642 23 34899999999999986543 455667763 56888876
Q ss_pred ccCHHHHHHHHHHHh
Q 012543 404 KLERGEVERAIRRVM 418 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll 418 (461)
-+++++.++|.+++
T Consensus 694 -~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 -YHGEEAAEKIVDFF 707 (784)
T ss_pred -CCHHHHHHHHHHHH
Confidence 57889999998876
No 90
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=5.4e-05 Score=72.12 Aligned_cols=320 Identities=14% Similarity=0.146 Sum_probs=179.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCCCCCCCCCC--CCceEEEcCCCCCCCcCCcccHHHHHHHHHH
Q 012543 17 LILFPLPFQGHINPMLQLANILYSK--GFSITIIH-TKFNSPNPSNY--PHFTFCSIQDGLSETEASTTDFVALISVLHV 91 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (461)
.+-+-.-+.|-++..++|.++|+++ +..+++-+ ++...+..... ..+...-+|-+++ ...
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~----------~~v----- 115 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP----------IAV----- 115 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch----------HHH-----
Confidence 4444446889999999999999999 88888765 43332222111 2244444442211 111
Q ss_pred HcchhHHHHHHHHhhcccccCCCCccEEEeCCCc--hhhHHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCC
Q 012543 92 KCAAPFQDCLAKLLSNAEEKEEEPIACLITDASW--FFTHDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQD 169 (461)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~--~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 169 (461)
..+++. ++||++|.-..- +....-+...|+|.+.+.-= .+..++
T Consensus 116 ----------~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------LS~rS~----- 161 (419)
T COG1519 116 ----------RRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------LSDRSF----- 161 (419)
T ss_pred ----------HHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------echhhh-----
Confidence 122221 789999876654 44455688999999996311 111111
Q ss_pred CCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCC-CCccccCcCcc
Q 012543 170 SHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFP-IPSFPIGPFHK 248 (461)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~vG~~~~ 248 (461)
......... ....+.+.+.++.++...-+. + .+ ++ .++..+|.+..
T Consensus 162 ------------------------~~y~k~~~~---~~~~~~~i~li~aQse~D~~R--f---~~-LGa~~v~v~GNlKf 208 (419)
T COG1519 162 ------------------------ARYAKLKFL---ARLLFKNIDLILAQSEEDAQR--F---RS-LGAKPVVVTGNLKF 208 (419)
T ss_pred ------------------------HHHHHHHHH---HHHHHHhcceeeecCHHHHHH--H---Hh-cCCcceEEecceee
Confidence 010111111 122234667778777654442 1 11 23 34788888876
Q ss_pred CCCCCcCCCccCc-chhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCC--CceEEEECCCccCCchhcccCc
Q 012543 249 YYPASASSLLSQD-RICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSK--VPFLWVVRPGLVRGAEWIELLP 325 (461)
Q Consensus 249 ~~~~~~~~~~~~~-~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~lp 325 (461)
.... ....+.. +.+...++. ...+.|..+|... ..+.+.....++.+.. ...||+-.... + .+
T Consensus 209 d~~~--~~~~~~~~~~~r~~l~~---~r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHpE-R-------f~ 274 (419)
T COG1519 209 DIEP--PPQLAAELAALRRQLGG---HRPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHPE-R-------FK 274 (419)
T ss_pred cCCC--ChhhHHHHHHHHHhcCC---CCceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCChh-h-------HH
Confidence 6443 0011111 123334433 1456676677443 3444555555555532 44555544322 1 11
Q ss_pred hhHHHHhc------------------CCCceeeecChhh-hhcCCCC----CccccccCchHHHHHhhcCCccccCcccc
Q 012543 326 RGFLEMLD------------------GRGHIVKWAPQQE-VLAHPAT----GAFWTHCGWNSTLESMCEGVPMICQPCHG 382 (461)
Q Consensus 326 ~~~~~~~~------------------~~~~~~~~vp~~~-lL~~~~~----~~~I~HGG~gs~~eal~~GvP~l~~P~~~ 382 (461)
.+.+... ..+.+.+-+--+- ++.-+++ +-++-+||.| ..|+++.|+|+|.=|...
T Consensus 275 -~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~ 352 (419)
T COG1519 275 -AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTF 352 (419)
T ss_pred -HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccc
Confidence 1111111 1233344433322 3344444 3356799997 689999999999999999
Q ss_pred hhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHH
Q 012543 383 EQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAE-GREMRNRAAILKEKLD 438 (461)
Q Consensus 383 DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~ 438 (461)
-|.+-++++.+. |.|+.++. .+.+.+++..+++|++ ...|.+++.++-...+
T Consensus 353 Nf~ei~~~l~~~-ga~~~v~~---~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 353 NFSDIAERLLQA-GAGLQVED---ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred cHHHHHHHHHhc-CCeEEECC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999996 99998864 7888889998888843 3445555555544443
No 91
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.59 E-value=2.9e-05 Score=76.94 Aligned_cols=72 Identities=10% Similarity=0.109 Sum_probs=52.2
Q ss_pred eeeecChhhhhcCCCCCcccccc----CchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHH
Q 012543 338 IVKWAPQQEVLAHPATGAFWTHC----GWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERA 413 (461)
Q Consensus 338 ~~~~vp~~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~ 413 (461)
+.++.+..+++..+|+ ||.-+ =..++.|||++|+|+|+.-..+ + ..+.+. +-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec---CCHHHHHHH
Confidence 3466666779999998 88763 3568999999999999986443 2 444442 445333 268899999
Q ss_pred HHHHhcc
Q 012543 414 IRRVMVD 420 (461)
Q Consensus 414 i~~ll~~ 420 (461)
+.++|++
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999986
No 92
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.57 E-value=9.9e-07 Score=85.73 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCeEEEEEccccc--c-CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHh--cCCCceeeecCh---
Q 012543 273 PKSVIYVSFGSIA--A-IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEML--DGRGHIVKWAPQ--- 344 (461)
Q Consensus 273 ~~~~v~vs~Gs~~--~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vp~--- 344 (461)
+++.+++++=... . ...+.+..+++++...+.+++++..... .+. ..+.+.+.+.. .+|+.+.+-+++
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~---~~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGS---RIINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCc---hHHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3578878875433 2 4457788899999887766666553321 110 01112222211 245677755444
Q ss_pred hhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceee-cCCccCHHHHHHHHHHHhc
Q 012543 345 QEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLH-LERKLERGEVERAIRRVMV 419 (461)
Q Consensus 345 ~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~-l~~~~~~~~l~~~i~~ll~ 419 (461)
..++.++++ +|+.++.|. .||.+.|+|+|.+- +.+ .-++. |-.+. + ..++++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~~--g~nvl~v--g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRLR--ADSVIDV--DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhhh--cCeEEEe--CCCHHHHHHHHHHHhC
Confidence 558889998 998886666 99999999999774 211 11121 32222 3 3588999999999554
No 93
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.55 E-value=6.4e-05 Score=72.96 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=76.8
Q ss_pred CCeEEEEEcccccc-CCHHHHHHHHHHHHhC--CCceEEEECCCccCCchhcccCchhHHH-HhcCCCceeeecCh-hhh
Q 012543 273 PKSVIYVSFGSIAA-IDETKFLEVAWGLANS--KVPFLWVVRPGLVRGAEWIELLPRGFLE-MLDGRGHIVKWAPQ-QEV 347 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~vp~-~~l 347 (461)
.++.+++..|+... ...+.+...+..+.+. +.+++++-.+.. ...+-..+.+ ...+++.+.++..+ ..+
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 263 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL------EEEIKKKVKELGLEDKVIFLGVRNDVPEL 263 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch------HHHHHHHHHhcCCCCcEEEecccCCHHHH
Confidence 45567777887664 2333333334444332 334444332221 0111111111 12355677777444 458
Q ss_pred hcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 348 LAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 348 L~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
+..+++ +|+- |-..++.|||++|+|+|+....+ ....+.+ +.|..... -+++++.++|.++++|
T Consensus 264 ~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 264 LQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-ESPEIWAEEILKLKSE 331 (358)
T ss_pred HHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-CCHHHHHHHHHHHHhC
Confidence 888998 6643 44679999999999999875543 3344444 44444433 4679999999999999
No 94
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.53 E-value=2.2e-07 Score=74.37 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=75.6
Q ss_pred CeEEEEEccccccC---CHHHHHHHHHHHHhCCCc-eEEEECCCccCCchhcccCchhHHHHhcCCCce--eeecCh-hh
Q 012543 274 KSVIYVSFGSIAAI---DETKFLEVAWGLANSKVP-FLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHI--VKWAPQ-QE 346 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~---~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~--~~~vp~-~~ 346 (461)
...+|||-||..+. +.-.-+..++.+.+.|.. .|+..+.+.... .-|.... +..+.+.+ .+|-|- .+
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~-----~d~~~~~-~k~~gl~id~y~f~psl~e 76 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFF-----GDPIDLI-RKNGGLTIDGYDFSPSLTE 76 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCC-----CCHHHhh-cccCCeEEEEEecCccHHH
Confidence 46799999997751 111123456677777765 455555552111 1111100 11111222 366776 66
Q ss_pred hhcCCCCCccccccCchHHHHHhhcCCccccCcc----cchhhhhHHHHHHhhhce
Q 012543 347 VLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC----HGEQMVIARYVSDVWKVG 398 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG~G 398 (461)
..+.+++ +|+|+|.||+.|.|..|+|.|+++. -..|-.-|..+++ .|.=
T Consensus 77 ~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL 129 (170)
T KOG3349|consen 77 DIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYL 129 (170)
T ss_pred HHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcE
Confidence 7788888 9999999999999999999999994 4689999988887 3653
No 95
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.49 E-value=5.1e-05 Score=75.50 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=54.6
Q ss_pred cCCCceeeecChhh---hhcCCCCCccccc---cCc-hHHHHHhhcCCccccCcccchhhhhHHHHH---HhhhceeecC
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTH---CGW-NSTLESMCEGVPMICQPCHGEQMVIARYVS---DVWKVGLHLE 402 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~lG~G~~l~ 402 (461)
.+++.+.+++|+.+ +|..+++ +|+- -|. -++.|||++|+|+|+.-..+.- ...++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe-
Confidence 46778889998765 7788887 5542 122 3889999999999986543311 12232 32 466553
Q ss_pred CccCHHHHHHHHHHHhcc
Q 012543 403 RKLERGEVERAIRRVMVD 420 (461)
Q Consensus 403 ~~~~~~~l~~~i~~ll~~ 420 (461)
-+++++.++|.+++++
T Consensus 377 --~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 --STAEEYAEAIEKILSL 392 (419)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2899999999999986
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.48 E-value=3.5e-05 Score=74.14 Aligned_cols=193 Identities=17% Similarity=0.145 Sum_probs=104.7
Q ss_pred CCCCccccC-cCccCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHh---C--CCceEEE
Q 012543 236 FPIPSFPIG-PFHKYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLAN---S--KVPFLWV 309 (461)
Q Consensus 236 ~~~~~~~vG-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~ 309 (461)
.+.++.||| |+...... .+......+.+ -.+++++|.+-.||-.+.=...+..++++.+. . +.++++.
T Consensus 151 ~g~~~~~VGHPl~d~~~~-----~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp 224 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKP-----EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVP 224 (373)
T ss_pred cCCCeEEECCcchhhhcc-----CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 356799999 55543322 11222233333 23478999999999776223334444555433 2 3444444
Q ss_pred ECCCccCCchhcccCchhHHHH---hcCCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCc-ccchh
Q 012543 310 VRPGLVRGAEWIELLPRGFLEM---LDGRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQP-CHGEQ 384 (461)
Q Consensus 310 ~~~~~~~~~~~~~~lp~~~~~~---~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P-~~~DQ 384 (461)
..... ....+.+. ...++.+. ..-.-.++|..+++ .+.-.|- .|.|+...|+|||++= ...=.
T Consensus 225 ~a~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt 292 (373)
T PF02684_consen 225 VAPEV---------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLT 292 (373)
T ss_pred cCCHH---------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHH
Confidence 33321 11111111 11222222 11234568889998 6666664 6899999999998874 22333
Q ss_pred hhhHHHHHHhhhc--------eeecCC-----ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 012543 385 MVIARYVSDVWKV--------GLHLER-----KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQS 450 (461)
Q Consensus 385 ~~na~~v~~~lG~--------G~~l~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 450 (461)
...|+++.+ ... |..+-+ +.|++.|.+++.++++| +..++..+...+.+++....+.++..+
T Consensus 293 ~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 293 YFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred HHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 445555543 121 111111 57999999999999999 444555555555555444455554443
No 97
>PLN00142 sucrose synthase
Probab=98.48 E-value=6.4e-05 Score=78.69 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=43.2
Q ss_pred CCCCccccc---cCch-HHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHH----hcc
Q 012543 351 PATGAFWTH---CGWN-STLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRV----MVD 420 (461)
Q Consensus 351 ~~~~~~I~H---GG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~l----l~~ 420 (461)
+++ ||.- -|.| ++.||+++|+|+|+... ......|++. .-|..++. -+++++.++|.++ ++|
T Consensus 667 aDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-~D~eaLA~aI~~lLekLl~D 736 (815)
T PLN00142 667 KGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-YHGDEAANKIADFFEKCKED 736 (815)
T ss_pred CCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-CCHHHHHHHHHHHHHHhcCC
Confidence 455 6643 4555 89999999999988654 3455667763 56877775 5677888887654 467
No 98
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.45 E-value=6.1e-05 Score=76.32 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=91.7
Q ss_pred CeEEEEEcccccc-CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChh---hhhc
Q 012543 274 KSVIYVSFGSIAA-IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQ---EVLA 349 (461)
Q Consensus 274 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~---~lL~ 349 (461)
+..+++..|.... ...+.+...+..+.+.+.+++++-.+.. .. ...+ ..+.++.+.++.+....+.. .++.
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~-~~---~~~l-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDP-EL---EEAL-RELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCH-HH---HHHH-HHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 4456667787664 2233333333333333455554433321 00 0001 11112233455555444543 3788
Q ss_pred CCCCCccccc---cCch-HHHHHhhcCCccccCcccchhhhhHHHHHH-----hhhceeecCCccCHHHHHHHHHHHhc-
Q 012543 350 HPATGAFWTH---CGWN-STLESMCEGVPMICQPCHGEQMVIARYVSD-----VWKVGLHLERKLERGEVERAIRRVMV- 419 (461)
Q Consensus 350 ~~~~~~~I~H---GG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-----~lG~G~~l~~~~~~~~l~~~i~~ll~- 419 (461)
.+|+ ++.- -|.| +.+||+++|+|.|+....+ ....+.+ .-+.|...+. -+++++.++|.++++
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~-~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEE-YDPGALLAALSRALRL 437 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCC-CCHHHHHHHHHHHHHH
Confidence 8998 6643 3444 7889999999999876532 1122222 0156777664 688999999999987
Q ss_pred ---chhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 420 ---DAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 420 ---~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
| +..+ +++++.. ..+.-+-++.+++.++.++++
T Consensus 438 ~~~~---~~~~---~~~~~~~---~~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 438 YRQD---PSLW---EALQKNA---MSQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HhcC---HHHH---HHHHHHH---hccCCCcHHHHHHHHHHHHhC
Confidence 5 3322 2232222 225667788888888877664
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=0.0006 Score=71.28 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=73.8
Q ss_pred cCCCceeeecCh-hhhhcCCCCCcccc---ccC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-ccC
Q 012543 333 DGRGHIVKWAPQ-QEVLAHPATGAFWT---HCG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLE 406 (461)
Q Consensus 333 ~~~~~~~~~vp~-~~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~ 406 (461)
.+++.+.+|.+. ..++..+|+ +|. +.| -+++.|||++|+|+|+.... .....|++. ..|..++. +.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCCCC
Confidence 366778888776 348889998 664 455 56899999999999997653 355567663 56887765 556
Q ss_pred HHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 407 RGEVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 407 ~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
++++.+++.+++.+.. .+.+++++++... +.-+..+.++.+.+.++
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHhC
Confidence 6677777766654310 1566666554432 33456666776666543
No 100
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.40 E-value=0.00014 Score=73.37 Aligned_cols=333 Identities=14% Similarity=0.105 Sum_probs=165.7
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHc
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKC 93 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
+.||++++.-..||+.- ..|.++|+++.-++.|.+-. ...... .|++... +...-....+.+.+.... ..
T Consensus 226 ~~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvG-G~~M~a--aG~e~l~-----d~~eLsVmG~~EVL~~l~-~l 295 (608)
T PRK01021 226 NTSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVG-GPQMRA--EGFHPLF-----NMEEFQVSGFWEVLLALF-KL 295 (608)
T ss_pred CCeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEc-cHHHHh--CcCcccC-----ChHHhhhhhHHHHHHHHH-HH
Confidence 45788888777788775 46778888886677776543 111111 2332110 000000111222222221 12
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEe-CCCc--hhhHHHHHHcCC--CeEEEecccHHHHHHHhhhhhhhhcCCCCCC
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLIT-DASW--FFTHDVAESLKL--PRIVLRSLSVSSSLVYAALPVLSQKGYFPIQ 168 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~-D~~~--~~a~~~A~~lgi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (461)
...+++..+.+.+ ++||++|. |.-. .-..-.+++.|+ |++.+.+- .
T Consensus 296 ~~~~~~l~~~i~~-------~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsP----------------------q 346 (608)
T PRK01021 296 WYRYRKLYKTILK-------TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCP----------------------S 346 (608)
T ss_pred HHHHHHHHHHHHh-------cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc----------------------c
Confidence 2234445555555 78999986 7432 334446777896 98774321 0
Q ss_pred CCCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccC-cCc
Q 012543 169 DSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIG-PFH 247 (461)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG-~~~ 247 (461)
. |.|+. .+...+. +..|.++.-.+ +|.+.. +..+.++.||| |+.
T Consensus 347 V-------------WAWR~------~Rikki~----------k~vD~ll~IfP--FE~~~y----~~~gv~v~yVGHPL~ 391 (608)
T PRK01021 347 I-------------WAWRP------KRKTILE----------KYLDLLLLILP--FEQNLF----KDSPLRTVYLGHPLV 391 (608)
T ss_pred c-------------eeeCc------chHHHHH----------HHhhhheecCc--cCHHHH----HhcCCCeEEECCcHH
Confidence 0 11111 1111111 22333333222 333322 22367799999 554
Q ss_pred cCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHH--hC--CCceEEEECCCccCCchhccc
Q 012543 248 KYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLA--NS--KVPFLWVVRPGLVRGAEWIEL 323 (461)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~ 323 (461)
...+. .+..++..+.++-.+++++|-+-.||-.+.=...+..++++.+ .. +.++++......
T Consensus 392 d~i~~-----~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~--------- 457 (608)
T PRK01021 392 ETISS-----FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK--------- 457 (608)
T ss_pred hhccc-----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---------
Confidence 33221 1222223444443446789999999977633444555666666 33 344544322221
Q ss_pred CchhHHHHhc-CC---CceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCc-ccchhhhhHHHHHH----h
Q 012543 324 LPRGFLEMLD-GR---GHIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQP-CHGEQMVIARYVSD----V 394 (461)
Q Consensus 324 lp~~~~~~~~-~~---~~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~~----~ 394 (461)
..+.+.+... .. +.+..--...+++..||+ .+.-+|- .+.|+...|+|||++= ...=-...|+++.+ +
T Consensus 458 ~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~y 534 (608)
T PRK01021 458 YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPA 534 (608)
T ss_pred hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCe
Confidence 1112222111 11 112110012579999998 7777775 6789999999998863 22222334454443 0
Q ss_pred h-----hceeec----C--C-ccCHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHH
Q 012543 395 W-----KVGLHL----E--R-KLERGEVERAIRRVMVDAE-GREMRNRAAILKEKLD 438 (461)
Q Consensus 395 l-----G~G~~l----~--~-~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~ 438 (461)
. =+|..+ - . +.|++.|.+++ ++|.|++ ...+++..+++.+.+.
T Consensus 535 IsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 535 YSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred eehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 0 112222 2 1 46899999997 7888732 3345555555555553
No 101
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=5.1e-05 Score=71.53 Aligned_cols=348 Identities=14% Similarity=0.110 Sum_probs=182.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcc
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCA 94 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (461)
+||++++.-..|++.- -.|.++|+++=-+|.|++-. ...... .|+ .++- +...-....+.+.+...-+. .
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvg-G~~m~a--eG~--~sl~---~~~elsvmGf~EVL~~lp~l-l 71 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVG-GEKMEA--EGL--ESLF---DMEELSVMGFVEVLGRLPRL-L 71 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEec-cHHHHh--ccC--cccc---CHHHHHHhhHHHHHHHHHHH-H
Confidence 5899999888898874 46788888873388887763 212111 232 1111 00000111222222222221 2
Q ss_pred hhHHHHHHHHhhcccccCCCCccEEE-eCCCchhhHHH---HHHcC--CCeEEEe-cccHHHHHHHhhhhhhhhcCCCCC
Q 012543 95 APFQDCLAKLLSNAEEKEEEPIACLI-TDASWFFTHDV---AESLK--LPRIVLR-SLSVSSSLVYAALPVLSQKGYFPI 167 (461)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~pDlvi-~D~~~~~a~~~---A~~lg--iP~v~~~-~~~~~~~~~~~~~~~~~~~~~~p~ 167 (461)
...+++++.+.. .+||++| .|.-. +...+ .++.| +|.|-+. |+-
T Consensus 72 k~~~~~~~~i~~-------~kpD~~i~IDsPd-Fnl~vak~lrk~~p~i~iihYV~PsV--------------------- 122 (381)
T COG0763 72 KIRRELVRYILA-------NKPDVLILIDSPD-FNLRVAKKLRKAGPKIKIIHYVSPSV--------------------- 122 (381)
T ss_pred HHHHHHHHHHHh-------cCCCEEEEeCCCC-CchHHHHHHHHhCCCCCeEEEECcce---------------------
Confidence 234456666666 8899988 45432 24444 45556 9988743 330
Q ss_pred CCCCCCcccCCCCCCCCCCCCCccccchhhhHHHHHHHHHHhccCccEEEEcChhHhhHHHHHHHHhhCCCCccccCcCc
Q 012543 168 QDSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFH 247 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG~~~ 247 (461)
|.|+. .+ .......+|.++.-- .+|...+ ..++.+.+|||.-.
T Consensus 123 ---------------WAWr~------~R----------a~~i~~~~D~lLail--PFE~~~y----~k~g~~~~yVGHpl 165 (381)
T COG0763 123 ---------------WAWRP------KR----------AVKIAKYVDHLLAIL--PFEPAFY----DKFGLPCTYVGHPL 165 (381)
T ss_pred ---------------eeech------hh----------HHHHHHHhhHeeeec--CCCHHHH----HhcCCCeEEeCChh
Confidence 00000 11 111112334333211 1333322 22456689999444
Q ss_pred cCCCCCcCCCccCcchhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhC-----CCceEEEECCCccCCchhcc
Q 012543 248 KYYPASASSLLSQDRICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANS-----KVPFLWVVRPGLVRGAEWIE 322 (461)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~ 322 (461)
...-. ..+..+.+.+-+....+++++.+-.||-.+.-......+.++..++ +.++++-+.... .+
T Consensus 166 ~d~i~----~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~------~~ 235 (381)
T COG0763 166 ADEIP----LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK------YR 235 (381)
T ss_pred hhhcc----ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH------HH
Confidence 33221 2233334556665566889999999997762223333344443332 356555544321 11
Q ss_pred cCchhHHHHhcCCC-ceeeec-Ch--hhhhcCCCCCccccccCchHHHHHhhcCCccccCcc-cchhhhhHHHHHHhhhc
Q 012543 323 LLPRGFLEMLDGRG-HIVKWA-PQ--QEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC-HGEQMVIARYVSDVWKV 397 (461)
Q Consensus 323 ~lp~~~~~~~~~~~-~~~~~v-p~--~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~lG~ 397 (461)
.+-... ...+. ...-++ ++ ...+..||+ .+.-+|- -+.|+..+|+|||+.=- ..=-...|++... +..
T Consensus 236 ~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~y 308 (381)
T COG0763 236 RIIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPY 308 (381)
T ss_pred HHHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCc
Confidence 111111 11111 122222 22 337888888 6666664 57899999999987621 1111223333222 111
Q ss_pred --------eeecCC-----ccCHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 398 --------GLHLER-----KLERGEVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 398 --------G~~l~~-----~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
|..+-+ ..+++.|.+++..++.|.+ ...+++....|...++ .++.++++.+.+++.++
T Consensus 309 isLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 309 VSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred ccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 111111 4789999999999999942 3456667777777776 66789999999988764
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.39 E-value=0.00018 Score=70.42 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=71.0
Q ss_pred CCCceeeec--Chh---hhhcCCCCCcccccc---C-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCc
Q 012543 334 GRGHIVKWA--PQQ---EVLAHPATGAFWTHC---G-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERK 404 (461)
Q Consensus 334 ~~~~~~~~v--p~~---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 404 (461)
.++.+.++. +.. .++..+|+ |+.-. | -.++.||+++|+|+|+.... .....+.+. ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 455666775 433 47788888 77533 2 34999999999999987543 233456553 5666543
Q ss_pred cCHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 405 LERGEVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 405 ~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
+.+.+..+|.++++|++ ...+.+++++. ..+.-+.+..++.+++.++++
T Consensus 323 -~~~~~a~~i~~ll~~~~~~~~~~~~a~~~-------~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 323 -TVEEAAVRILYLLRDPELRRKMGANAREH-------VRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred -CcHHHHHHHHHHHcCHHHHHHHHHHHHHH-------HHHHcCHHHHHHHHHHHHHhC
Confidence 45678889999999832 22333333332 224456788888888877754
No 103
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.39 E-value=3.5e-05 Score=74.83 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=85.3
Q ss_pred EEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhh---hhcCCCC
Q 012543 277 IYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQE---VLAHPAT 353 (461)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~---lL~~~~~ 353 (461)
.++..|+... ....+.++++++..+.+++++..+.. .+.+.+...+|+.+.+++|+.+ ++..+++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~----------~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPE----------LDRLRAKAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChh----------HHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 3556677663 34466777888887777655544321 1223334567788999999854 7888998
Q ss_pred Cccc--cccCc-hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcch
Q 012543 354 GAFW--THCGW-NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDA 421 (461)
Q Consensus 354 ~~~I--~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~ 421 (461)
+| +.-|. .++.|||++|+|+|+....+ ....+++. +.|..++. -+.+.+.++|.++++|+
T Consensus 265 --~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 --FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKNE 327 (351)
T ss_pred --EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhCc
Confidence 55 33343 35789999999999986533 34445553 67877765 57889999999999983
No 104
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.37 E-value=0.00025 Score=71.69 Aligned_cols=170 Identities=12% Similarity=0.114 Sum_probs=87.3
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHh---CCCceEEEECCCccCCchhcccCchhHHHHhcCCCce-eeecCh--hhh
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLAN---SKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHI-VKWAPQ--QEV 347 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-~~~vp~--~~l 347 (461)
+..+++..|.... ...+..++++++. .+.+++++-.+.. .. ...+- ...+..+.++.+ .+|-.. ..+
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~-~~---~~~l~-~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDP-EL---EEAFR-ALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcH-HH---HHHHH-HHHHHCCCcEEEEEeCCHHHHHHH
Confidence 4556777787664 2223334444333 3566655533221 00 00011 111223344443 355322 247
Q ss_pred hcCCCCCcccc---ccCch-HHHHHhhcCCccccCcccc--hhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcch
Q 012543 348 LAHPATGAFWT---HCGWN-STLESMCEGVPMICQPCHG--EQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDA 421 (461)
Q Consensus 348 L~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~ 421 (461)
+..+|+ +|. +-|.| +.+||+++|+|.|+....+ |.-.+...-... +-|...+. -+++++.++|.+++++.
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l~~~ 429 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRALELY 429 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHHHh
Confidence 888998 664 34555 7889999999999875432 211111000121 66777765 67899999999988631
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 422 EGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 422 ~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
..+.. .++++... ..+.-+-++.+++.++.+++
T Consensus 430 ~~~~~---~~~~~~~~---~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 430 RQPPL---WRALQRQA---MAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred cCHHH---HHHHHHHH---hccCCChHHHHHHHHHHHHH
Confidence 00221 22222222 22455666667776665543
No 105
>PLN02949 transferase, transferring glycosyl groups
Probab=98.25 E-value=0.0016 Score=65.28 Aligned_cols=112 Identities=21% Similarity=0.146 Sum_probs=68.6
Q ss_pred cCCCceeeecChhh---hhcCCCCCcccc---ccCch-HHHHHhhcCCccccCcccchhhhhHHHHHH-hhh-ceeecCC
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWT---HCGWN-STLESMCEGVPMICQPCHGEQMVIARYVSD-VWK-VGLHLER 403 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~lG-~G~~l~~ 403 (461)
.+++.+.+++|+.+ +|..+++ +|+ +-|.| ++.|||++|+|+|+....+--. ..+.. .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 46678889998755 6788887 663 23444 7999999999999986543100 01111 001 23222
Q ss_pred ccCHHHHHHHHHHHhcch-h-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 404 KLERGEVERAIRRVMVDA-E-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
-+.+++.++|.++++++ + ...+.+++++-.++ -+.++..+++.+.+++
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHH
Confidence 27899999999999842 1 22444454443333 4566677777666554
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.22 E-value=0.00051 Score=69.74 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=87.3
Q ss_pred CeEEEEEcccccc-CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHH---HhcCCCceeeecChh---h
Q 012543 274 KSVIYVSFGSIAA-IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLE---MLDGRGHIVKWAPQQ---E 346 (461)
Q Consensus 274 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~~~~~vp~~---~ 346 (461)
+..+++..|.... ...+.+...+..+.+.+.+++++..+.. .+.+.+.+ +..+|+.+..-.++. .
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP--------EYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH--------HHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 4556777787664 2233333333333333455554443321 01111211 223555554333332 3
Q ss_pred hhcCCCCCccccc---cCc-hHHHHHhhcCCccccCcccc--hhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 347 VLAHPATGAFWTH---CGW-NSTLESMCEGVPMICQPCHG--EQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
++..+|+ ++.- -|. .+.+||+++|+|+|+....+ |.-.+.....+. |.|...+. -+++++.++|.+++++
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-YNADALLAALRRALAL 442 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-CCHHHHHHHHHHHHHH
Confidence 7788888 6643 233 37789999999999876532 211111101122 57877765 5789999999999864
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 421 AEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 421 ~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
. .-++...++++... ...-+-++.+++.++.++
T Consensus 443 ~---~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 443 Y---RDPEAWRKLQRNAM---AQDFSWDRSAKEYLELYR 475 (476)
T ss_pred H---cCHHHHHHHHHHHh---ccCCChHHHHHHHHHHHh
Confidence 1 11222223333222 244556666777766654
No 107
>PLN02316 synthase/transferase
Probab=98.21 E-value=0.0019 Score=69.66 Aligned_cols=118 Identities=10% Similarity=0.051 Sum_probs=70.3
Q ss_pred CCCceeeecChh---hhhcCCCCCcccccc---C-chHHHHHhhcCCccccCcccc--hhhhhH----HHHHHh--hhce
Q 012543 334 GRGHIVKWAPQQ---EVLAHPATGAFWTHC---G-WNSTLESMCEGVPMICQPCHG--EQMVIA----RYVSDV--WKVG 398 (461)
Q Consensus 334 ~~~~~~~~vp~~---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~--DQ~~na----~~v~~~--lG~G 398 (461)
+++.+....+.. .+++.+|+ |+.-. | --+.+|||++|+|.|+....+ |.-... .+.+.. -+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 345555444443 48888998 77432 3 338999999999988865532 221111 000100 0346
Q ss_pred eecCCccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 399 LHLERKLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 399 ~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
...+. .+++.|..+|.+++++ |....+.+++..+.++...-|-.+.++..++.++
T Consensus 978 flf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 978 FSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred EEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 55554 6889999999999976 3344444555555555455666666666665554
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.18 E-value=0.002 Score=63.10 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=66.4
Q ss_pred CCCceeeecChhh---hhcCCCCCccc------cccCc-hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC
Q 012543 334 GRGHIVKWAPQQE---VLAHPATGAFW------THCGW-NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 334 ~~~~~~~~vp~~~---lL~~~~~~~~I------~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~ 403 (461)
.|+.+.+++|+.+ .+.++|+.++- +.++. +.+.|+|++|+|+|+.++ ...++.. +.+....
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~~~~~~~- 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-DEVVLIA- 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-CcEEEeC-
Confidence 6778899999766 67788883332 22333 458999999999998763 2233332 3232332
Q ss_pred ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 404 KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
-+.+++.++|.+++.+++....++ +++ +. +..+-++.++++.+.|++
T Consensus 325 -~d~~~~~~ai~~~l~~~~~~~~~~-~~~----~~----~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 -DDPEEFVAAIEKALLEDGPARERR-RLR----LA----AQNSWDARAAEMLEALQE 371 (373)
T ss_pred -CCHHHHHHHHHHHHhcCCchHHHH-HHH----HH----HHCCHHHHHHHHHHHHHh
Confidence 379999999999776521111221 111 22 445667777777766654
No 109
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.08 E-value=7.7e-05 Score=73.31 Aligned_cols=176 Identities=19% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHH--hcCCCceeeecChhhh--
Q 012543 272 APKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEM--LDGRGHIVKWAPQQEV-- 347 (461)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vp~~~l-- 347 (461)
+.+.++|.+|......+++.+....+.++..+.-.+|....... + ...+...+.+. ..+|+.+.++.|..+-
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~---~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-G---EARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-H---HHHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-H---HHHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 46789999999999999999999999999988888888765421 1 11121211111 1356677777776553
Q ss_pred -hcCCCCCcc---ccccCchHHHHHhhcCCccccCcccchh-hhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchh
Q 012543 348 -LAHPATGAF---WTHCGWNSTLESMCEGVPMICQPCHGEQ-MVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAE 422 (461)
Q Consensus 348 -L~~~~~~~~---I~HGG~gs~~eal~~GvP~l~~P~~~DQ-~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~ 422 (461)
+..+|+ + ...+|.+|++|||+.|||+|.+|-..=. ..-|..+.. +|+...+. .+.++-.+.--++-+|
T Consensus 358 ~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA--~s~~eYv~~Av~La~D-- 430 (468)
T PF13844_consen 358 RYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA--DSEEEYVEIAVRLATD-- 430 (468)
T ss_dssp HGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB---SSHHHHHHHHHHHHH---
T ss_pred HhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC--CCHHHHHHHHHHHhCC--
Confidence 344665 4 3568899999999999999999954333 334455665 68876554 4677777777777778
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 423 GREMRNR-AAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 423 ~~~~~~~-a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
..++++ -++|++++.+ .......+.+.++.+.+++|
T Consensus 431 -~~~l~~lR~~Lr~~~~~--SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 431 -PERLRALRAKLRDRRSK--SPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp -HHHHHHHHHHHHHHHHH--SGGG-HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHHh
Confidence 333322 2233333321 13356777777777777653
No 110
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.04 E-value=0.00023 Score=67.34 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=96.3
Q ss_pred CCeEEEEEccccccCCHHHHHHHHH----HHHhC-CCceEEEECCCccCCchhcccCchhHHHHhc--CCCcee---eec
Q 012543 273 PKSVIYVSFGSIAAIDETKFLEVAW----GLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLEMLD--GRGHIV---KWA 342 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~----a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~---~~v 342 (461)
.++.+++|+=-..... +.+..++. ..++. +..+|.-+.... .+.+-...+++ .|+.+. +|.
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~--------~v~e~~~~~L~~~~~v~li~pl~~~ 273 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP--------RVRELVLKRLKNVERVKLIDPLGYL 273 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh--------hhhHHHHHHhCCCCcEEEeCCcchH
Confidence 5678888874433322 33444444 44444 333333333221 01111122333 345554 677
Q ss_pred ChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchh
Q 012543 343 PQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAE 422 (461)
Q Consensus 343 p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~ 422 (461)
+...++.++-+ ++|-.|. -.-||-..|+|++++=...|+|. +++. |.-+.+. .+.+.|.+++.+++++
T Consensus 274 ~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg--~~~~~i~~~~~~ll~~-- 341 (383)
T COG0381 274 DFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG--TDEENILDAATELLED-- 341 (383)
T ss_pred HHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC--ccHHHHHHHHHHHhhC--
Confidence 78889999988 8988774 46799999999999998888887 4442 5544443 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012543 423 GREMRNRAAILKEKLDLCTKQGSSSYQSLENLIS 456 (461)
Q Consensus 423 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 456 (461)
+...++.+....-+- +|.++.+.++.+.+
T Consensus 342 -~~~~~~m~~~~npYg----dg~as~rIv~~l~~ 370 (383)
T COG0381 342 -EEFYERMSNAKNPYG----DGNASERIVEILLN 370 (383)
T ss_pred -hHHHHHHhcccCCCc----CcchHHHHHHHHHH
Confidence 666665555544443 33344444444443
No 111
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.04 E-value=0.0018 Score=65.65 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=70.1
Q ss_pred cCCCceeeecChhhhhcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHh----hh-ceeecCC
Q 012543 333 DGRGHIVKWAPQQEVLAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDV----WK-VGLHLER 403 (461)
Q Consensus 333 ~~~~~~~~~vp~~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----lG-~G~~l~~ 403 (461)
.+|+.+.+.....+++..+|+ +|.- |--.++.||+++|+|+|+.. .......+++. +| .|...+.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC
Confidence 356677775555678888998 5533 34568999999999999854 33444455541 12 5766654
Q ss_pred ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012543 404 KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISY 457 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 457 (461)
-+.+++.++|.++++| +..++ ++++..++.+.+.-+.++.++...+.
T Consensus 427 -~d~~~la~ai~~ll~~---~~~~~---~~~~~a~~~v~~~~s~~~~~~~y~~l 473 (475)
T cd03813 427 -ADPEALARAILRLLKD---PELRR---AMGEAGRKRVERYYTLERMIDSYRRL 473 (475)
T ss_pred -CCHHHHHHHHHHHhcC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6899999999999999 33222 22222222222334455555555543
No 112
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.97 E-value=0.0018 Score=65.72 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=96.7
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHh----C-CCceEEEECCCccCCchhcccCchhHHHH-hcCCCceeeecChhhh
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLAN----S-KVPFLWVVRPGLVRGAEWIELLPRGFLEM-LDGRGHIVKWAPQQEV 347 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~----~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~-~~~~~~~~~~vp~~~l 347 (461)
++.++++.|.... ...+..+++|+.. . +.++ ..++.+.. ...+.+-+.+. ..+++.+.++.+...+
T Consensus 318 ~~~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l-~i~G~G~~-----~~~l~~~i~~~~l~~~V~f~G~~~~~~~ 389 (500)
T TIGR02918 318 KPFSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTF-DIYGEGGE-----KQKLQKIINENQAQDYIHLKGHRNLSEV 389 (500)
T ss_pred CCeEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEE-EEEECchh-----HHHHHHHHHHcCCCCeEEEcCCCCHHHH
Confidence 4456777788764 2334445555443 2 2333 33443321 11122222111 2345677788888889
Q ss_pred hcCCCCCcccc---ccC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC---ccC----HHHHHHHHHH
Q 012543 348 LAHPATGAFWT---HCG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER---KLE----RGEVERAIRR 416 (461)
Q Consensus 348 L~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~---~~~----~~~l~~~i~~ 416 (461)
+..+++ +|. .-| ..++.||+++|+|+|+....+ .+...+++. .-|..+.. .-+ .+++.++|.+
T Consensus 390 ~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ 463 (500)
T TIGR02918 390 YKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVE 463 (500)
T ss_pred HHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHH
Confidence 999998 665 234 458999999999999975421 234555552 45666542 122 7889999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 417 VMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 417 ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
+++++....+.+++.+.++.+ +.+..++...+.+++
T Consensus 464 ll~~~~~~~~~~~a~~~a~~f--------s~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 464 YFNSNDIDAFHEYSYQIAEGF--------LTANIIEKWKKLVRE 499 (500)
T ss_pred HhChHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhh
Confidence 996532345666666655544 466777776666655
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.96 E-value=0.00023 Score=69.96 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=78.9
Q ss_pred cCCCceeeecChhh---hhcCCCCCccccc----cCc-hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCc
Q 012543 333 DGRGHIVKWAPQQE---VLAHPATGAFWTH----CGW-NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERK 404 (461)
Q Consensus 333 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H----GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 404 (461)
+.++.+.+++|+.+ ++..+|+ +|.. .|. .++.|||++|+|+|+.... .+...+++. ..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeCC
Confidence 45667789998654 6888998 6643 343 5778999999999997653 345566663 567644333
Q ss_pred cCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 405 LERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 405 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
.+.+++.++|.++++| +..+ ++++..++...+.-+-++.++++.+.|++
T Consensus 329 ~d~~~la~~I~~ll~d---~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 MTSDSIISDINRTLAD---PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCHHHHHHHHHHHHcC---HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5899999999999999 4432 33444433333566778888888887765
No 114
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.93 E-value=0.013 Score=57.88 Aligned_cols=154 Identities=10% Similarity=0.002 Sum_probs=80.9
Q ss_pred EEEEccccccCCHHHHHHHHHHHHhCCCce-EEEECCCccCCchhcccCchhHHHHhcCCCceeeecC-h---hhhhcCC
Q 012543 277 IYVSFGSIAAIDETKFLEVAWGLANSKVPF-LWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAP-Q---QEVLAHP 351 (461)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-~---~~lL~~~ 351 (461)
+++..|.........+..+++|+...+.++ ++.++.+.. ..++ ++...++.. + ..++..+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~-------~~~~--------~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP-------FTAG--------NVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc-------cccc--------ceEEecCcCCHHHHHHHHHhC
Confidence 444445422222334566788887765443 344443310 0111 223344442 2 3356678
Q ss_pred CCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHHHH
Q 012543 352 ATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGREMR 427 (461)
Q Consensus 352 ~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~ 427 (461)
|+ ||.- |--.++.|||++|+|+|+....+ ....+. . +-|..++. -+.++|.+.++..+.+ ..+.
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~-~-~~G~lv~~-~d~~~La~~~~~~~~~---~~~~ 375 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQ-K-SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFG 375 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEe-C-CcEEEECC-CCHHHHHhccCHHHHH---Hhhh
Confidence 87 7653 33568999999999999997764 222333 3 56777765 4677777643322222 1111
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 428 NRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 428 ~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
+...+ .++...+.-+...-+++.++.++++
T Consensus 376 ~~~~~----~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 376 TTLAE----FSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred hHHHH----HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 10111 2222224556777788877776654
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.84 E-value=0.00088 Score=65.53 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=67.9
Q ss_pred cCCCceeeecCh-hhhhcCCCCCccccc--cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHH
Q 012543 333 DGRGHIVKWAPQ-QEVLAHPATGAFWTH--CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGE 409 (461)
Q Consensus 333 ~~~~~~~~~vp~-~~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~ 409 (461)
+.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+++. ..|..++. -+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHHH
Confidence 345566676665 348899998344444 33558999999999999865331 234555653 67777664 68999
Q ss_pred HHHHHHHHhcchh-HHHHHHHHHHHHHHHH
Q 012543 410 VERAIRRVMVDAE-GREMRNRAAILKEKLD 438 (461)
Q Consensus 410 l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~ 438 (461)
+.++|.++++|++ ...+.+++.+.++++.
T Consensus 335 la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 335 LAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999943 3455566665555443
No 116
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.83 E-value=0.0061 Score=62.57 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=51.3
Q ss_pred CceeeecChh-hhhcCCCCCccccc---cC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHH
Q 012543 336 GHIVKWAPQQ-EVLAHPATGAFWTH---CG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEV 410 (461)
Q Consensus 336 ~~~~~~vp~~-~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l 410 (461)
+.+.++.++. .+++.+|+ ||.- =| ..++.|||++|+|+|+....+... +.+ |.+-.+. -+.+++
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~--~D~Eaf 671 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY--KTSEDF 671 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec--CCHHHH
Confidence 3455666654 48999998 7753 23 558999999999999987654321 222 2222232 378999
Q ss_pred HHHHHHHhcc
Q 012543 411 ERAIRRVMVD 420 (461)
Q Consensus 411 ~~~i~~ll~~ 420 (461)
.++|.++++|
T Consensus 672 AeAI~~LLsd 681 (794)
T PLN02501 672 VAKVKEALAN 681 (794)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 117
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.80 E-value=0.00048 Score=68.32 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=71.5
Q ss_pred CCCceeeecChhh---hhcCCCCCccccccC----chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccC
Q 012543 334 GRGHIVKWAPQQE---VLAHPATGAFWTHCG----WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLE 406 (461)
Q Consensus 334 ~~~~~~~~vp~~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 406 (461)
.++.+.+|+++.+ ++..+++.++|...- -.+++|||++|+|+|+... ......+.+. +.|..+...-+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCCCCC
Confidence 4567789999865 444444333765443 4589999999999998653 3456677763 58877765458
Q ss_pred HHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012543 407 RGEVERAIRRVMVDAE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLI 455 (461)
Q Consensus 407 ~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 455 (461)
.+++.++|.++++|++ ...+++++++ .+.+.-+.+...++++
T Consensus 364 ~~~la~~I~~ll~~~~~~~~m~~~ar~-------~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 PNELVSSLSKFIDNEEEYQTMREKARE-------KWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHH-------HHHHHcCHHHhHHHhc
Confidence 8999999999999832 2333333333 3334445555555543
No 118
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.77 E-value=0.00019 Score=61.77 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=62.1
Q ss_pred cCCCceeeecCh---hhhhcCCCCCccccc----cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 333 DGRGHIVKWAPQ---QEVLAHPATGAFWTH----CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 333 ~~~~~~~~~vp~---~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
..++.+.+++++ ..++..+++ +|+. |...++.||+++|+|+|+. |...+...+... +.|...+. .
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-~ 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-N 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-T
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-C
Confidence 456788899883 448888998 7776 6677999999999999975 456666777773 66888876 4
Q ss_pred CHHHHHHHHHHHhcc
Q 012543 406 ERGEVERAIRRVMVD 420 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~ 420 (461)
+.+++.++|.+++++
T Consensus 144 ~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 144 DIEELADAIEKLLND 158 (172)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC
Confidence 999999999999999
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.50 E-value=0.01 Score=52.98 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=35.4
Q ss_pred CCCceeeecChh---h-hhcCCCCCccccccC----chHHHHHhhcCCccccCcccchh
Q 012543 334 GRGHIVKWAPQQ---E-VLAHPATGAFWTHCG----WNSTLESMCEGVPMICQPCHGEQ 384 (461)
Q Consensus 334 ~~~~~~~~vp~~---~-lL~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ 384 (461)
.|+.+.++++.. . ++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 455777776332 2 4444887 887776 78999999999999998875543
No 120
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00087 Score=53.10 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=65.5
Q ss_pred EEEEccccccCCHHHHHHH-HHHHHhC-CCceEEEECCCccCCchhcccCc-hhHHHHhcCCCceeee--cCh-hhhhcC
Q 012543 277 IYVSFGSIAAIDETKFLEV-AWGLANS-KVPFLWVVRPGLVRGAEWIELLP-RGFLEMLDGRGHIVKW--APQ-QEVLAH 350 (461)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~-~~a~~~~-~~~~i~~~~~~~~~~~~~~~~lp-~~~~~~~~~~~~~~~~--vp~-~~lL~~ 350 (461)
+|||-||....-.+....+ ..-+.+. .-++|+.++.+. ..| .+. ++.+| -+- +.+.+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--------~kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--------IKPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--------ccccccc--------EEEeechHHHHHHHhhc
Confidence 7899999732001111110 1122222 346777777652 122 112 44444 333 446666
Q ss_pred CCCCccccccCchHHHHHhhcCCccccCcccc--------hhhhhHHHHHHhhhceeecCC
Q 012543 351 PATGAFWTHCGWNSTLESMCEGVPMICQPCHG--------EQMVIARYVSDVWKVGLHLER 403 (461)
Q Consensus 351 ~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~lG~G~~l~~ 403 (461)
+++ +|+|+|.||+..++..++|.|++|-.. .|-..|..+.+ ++.=....+
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 666 999999999999999999999999643 57777777776 566555543
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.39 E-value=0.2 Score=50.88 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=66.2
Q ss_pred cCCCceeeecCh-hhhhcCCCCCcccc---ccC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCH
Q 012543 333 DGRGHIVKWAPQ-QEVLAHPATGAFWT---HCG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLER 407 (461)
Q Consensus 333 ~~~~~~~~~vp~-~~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~ 407 (461)
.+++.+.+|... ..+|..+|+ ||. .-| -+++.||+++|+|+|+... ..+...+.+. ..|..++. -+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CCh
Confidence 366777787654 348899998 875 344 5599999999999997754 3456666663 67777765 334
Q ss_pred HHHHHHH---HHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 408 GEVERAI---RRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 408 ~~l~~~i---~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
+.+.+++ .++.++ .....++++..++.+.+.-+.+.-++...+.+
T Consensus 526 ~aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 526 VNLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 4444444 223322 11111233333333334555666666666554
No 122
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.38 E-value=0.0009 Score=64.43 Aligned_cols=110 Identities=17% Similarity=0.309 Sum_probs=81.7
Q ss_pred CCCceeeecChhhhh---cCCCCCccccc-------cCc------hHHHHHhhcCCccccCcccchhhhhHHHHHHhhhc
Q 012543 334 GRGHIVKWAPQQEVL---AHPATGAFWTH-------CGW------NSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKV 397 (461)
Q Consensus 334 ~~~~~~~~vp~~~lL---~~~~~~~~I~H-------GG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~ 397 (461)
.|+.+.+|+|++++. .. +.+++... |.+ +-+.+.|++|+|+|+. ++...+..|++. ++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 456888999998754 33 44333322 111 2267789999999985 556788999995 99
Q ss_pred eeecCCccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012543 398 GLHLERKLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISY 457 (461)
Q Consensus 398 G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 457 (461)
|..++ +.+++.+++.++. +++...|++|+++++++++ .|.-..+++++++..
T Consensus 281 G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 281 GFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred eEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 99986 5678999998864 3335679999999999999 888888888887764
No 123
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.37 E-value=0.035 Score=50.99 Aligned_cols=103 Identities=18% Similarity=0.120 Sum_probs=70.2
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEcCCCCCCCcCCcccHH-HHHHHHHHHcchhHHHHH
Q 012543 24 FQGHINPMLQLANILYSKGFSITIIHTKFNS-PNPSNYPHFTFCSIQDGLSETEASTTDFV-ALISVLHVKCAAPFQDCL 101 (461)
Q Consensus 24 ~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 101 (461)
-.-|+.-+-.+.++|..+||+|.+-+-++.. ....+..||.+..+...-. ..+. .....+.+. ..+
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~------~tl~~Kl~~~~eR~------~~L 76 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGG------VTLKEKLLESAERV------YKL 76 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCC------ccHHHHHHHHHHHH------HHH
Confidence 3456777889999999999999998876443 2333457899998874311 1222 222222222 123
Q ss_pred HHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecc
Q 012543 102 AKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 102 ~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~ 145 (461)
-++... ++||+.+. -.++.+..+|--+|+|.+++...
T Consensus 77 ~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 77 SKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 344443 88999999 57888999999999999998655
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.33 E-value=0.2 Score=49.62 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=91.4
Q ss_pred hhhcCCCCCCeEEEEEccccccC------C-H---HHHHHHHHHHHhCCCceEEEECCCccC---CchhcccCchhHHHH
Q 012543 265 ISRLDKQAPKSVIYVSFGSIAAI------D-E---TKFLEVAWGLANSKVPFLWVVRPGLVR---GAEWIELLPRGFLEM 331 (461)
Q Consensus 265 ~~~l~~~~~~~~v~vs~Gs~~~~------~-~---~~~~~~~~a~~~~~~~~i~~~~~~~~~---~~~~~~~lp~~~~~~ 331 (461)
..|+...+.+++|.++.-..... . . ..+..+++.+...+++++++....... .++ ...-..+.+.
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD--~~~~~~l~~~ 302 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDD--RMVALNLRQH 302 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCch--HHHHHHHHHh
Confidence 34554434567888886543311 1 1 223344555555688877665432110 000 0011223333
Q ss_pred hcC--CCcee--eecChh--hhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceee-cCC-
Q 012543 332 LDG--RGHIV--KWAPQQ--EVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLH-LER- 403 (461)
Q Consensus 332 ~~~--~~~~~--~~vp~~--~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~-l~~- 403 (461)
++. +..+. .+-|.+ .++.+|++ +|..= .=++.-|+..|||.+.++. | +.....+++ +|.... .+.
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~ 375 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIR 375 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechh
Confidence 322 22332 233433 58889987 77533 2245667889999999987 2 444455567 788766 444
Q ss_pred ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 012543 404 KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLD 438 (461)
Q Consensus 404 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 438 (461)
.++.++|.+.++++++|. +.++++.++--++++
T Consensus 376 ~l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r 408 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQL--PALNARLAEAVSRER 408 (426)
T ss_pred hCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHH
Confidence 789999999999999995 344544444444443
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.31 E-value=0.00055 Score=66.00 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=79.8
Q ss_pred CCCeEEEEEccccccCC----HHHHHHHHHHHHhC-CCceEEEECCCccCCchhcccCchhHHHHhc--CCCceeeecCh
Q 012543 272 APKSVIYVSFGSIAAID----ETKFLEVAWGLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLEMLD--GRGHIVKWAPQ 344 (461)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~----~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~~~vp~ 344 (461)
.+++.+++++=...... ...+..+++++.+. +.++||....... ....+.+... .|+.+.+-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~--------~~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR--------GSDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH--------HHHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch--------HHHHHHHHhcccCCEEEECCCCH
Confidence 46899999984444433 24455566777665 6778888774320 1112222211 36777766555
Q ss_pred ---hhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcch
Q 012543 345 ---QEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDA 421 (461)
Q Consensus 345 ---~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~ 421 (461)
..+|.++++ +|+..| |-.-||.+.|+|+|.+=..++.+ .-+.. |-.+.+ ..+.++|.+++.+++++
T Consensus 250 ~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRq---e~r~~--~~nvlv--~~~~~~I~~ai~~~l~~- 318 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQ---EGRER--GSNVLV--GTDPEAIIQAIEKALSD- 318 (346)
T ss_dssp HHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-H---HHHHT--TSEEEE--TSSHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCH---HHHhh--cceEEe--CCCHHHHHHHHHHHHhC-
Confidence 558889999 999999 54449999999999992222211 22221 444443 36899999999999987
Q ss_pred hHHHHHHHHHH
Q 012543 422 EGREMRNRAAI 432 (461)
Q Consensus 422 ~~~~~~~~a~~ 432 (461)
.....+.+.
T Consensus 319 --~~~~~~~~~ 327 (346)
T PF02350_consen 319 --KDFYRKLKN 327 (346)
T ss_dssp --HHHHHHHHC
T ss_pred --hHHHHhhcc
Confidence 455554443
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.22 E-value=0.013 Score=56.06 Aligned_cols=137 Identities=13% Similarity=0.041 Sum_probs=76.9
Q ss_pred hcCCCCCCeEEEEEcccccc---CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceee--e
Q 012543 267 RLDKQAPKSVIYVSFGSIAA---IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVK--W 341 (461)
Q Consensus 267 ~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~--~ 341 (461)
++....+++.|.+..|+... .+.+.+..+++.+.+.++++++..++.. ....-+.+.+..+. ..+.+ -
T Consensus 172 ~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~------e~~~~~~i~~~~~~-~~l~g~~s 244 (319)
T TIGR02193 172 FLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA------EKQRAERIAEALPG-AVVLPKMS 244 (319)
T ss_pred hhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHHHHHHHHhhCCC-CeecCCCC
Confidence 44333345667666665433 6778888888888766777665544321 01111222222221 12222 2
Q ss_pred cCh-hhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhce---eecC-C-ccCHHHHHHHHH
Q 012543 342 APQ-QEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVG---LHLE-R-KLERGEVERAIR 415 (461)
Q Consensus 342 vp~-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G---~~l~-~-~~~~~~l~~~i~ 415 (461)
+++ ..++.+|++ +|+. -.|.++=|.+.|+|+|++= ... +..+..= +|-. +.-. . ..+++++.++++
T Consensus 245 L~el~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lf-g~t---~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~ 316 (319)
T TIGR02193 245 LAEVAALLAGADA--VVGV-DTGLTHLAAALDKPTVTLY-GAT---DPGRTGG-YGKPNVALLGESGANPTPDEVLAALE 316 (319)
T ss_pred HHHHHHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEE-CCC---CHhhccc-CCCCceEEccCccCCCCHHHHHHHHH
Confidence 334 448899997 7775 5678899999999998762 111 1111110 1111 1111 2 789999999998
Q ss_pred HHh
Q 012543 416 RVM 418 (461)
Q Consensus 416 ~ll 418 (461)
++|
T Consensus 317 ~~~ 319 (319)
T TIGR02193 317 ELL 319 (319)
T ss_pred hhC
Confidence 875
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.16 E-value=0.00086 Score=55.05 Aligned_cols=80 Identities=23% Similarity=0.266 Sum_probs=49.5
Q ss_pred cCCCceeeecCh-hhhhcCCCCCccccc---cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 333 DGRGHIVKWAPQ-QEVLAHPATGAFWTH---CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 333 ~~~~~~~~~vp~-~~lL~~~~~~~~I~H---GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
..|+.+.+|++. .+++..+++.+..+. |-.+++.|++++|+|+|+.+.. ....++.. +.|..+. -+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~~--~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLVA--NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T--T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEEC--CCHH
Confidence 357788899865 348889998555442 2358999999999999997651 22334443 7777773 4999
Q ss_pred HHHHHHHHHhcc
Q 012543 409 EVERAIRRVMVD 420 (461)
Q Consensus 409 ~l~~~i~~ll~~ 420 (461)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 128
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.46 Score=43.65 Aligned_cols=86 Identities=19% Similarity=0.192 Sum_probs=54.6
Q ss_pred eeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchh--hhhHHHHHHhhhceeecCCccCHHHHHHHHHH
Q 012543 339 VKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQ--MVIARYVSDVWKVGLHLERKLERGEVERAIRR 416 (461)
Q Consensus 339 ~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ--~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ 416 (461)
..|-.+.++|+++++ .|--.|- .+-+++--|||+|.+|..+-| |..|.+=.+-||+.+.+.. -.+..-....++
T Consensus 300 lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~ 375 (412)
T COG4370 300 LSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQE 375 (412)
T ss_pred EeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHH
Confidence 356666667777776 5544432 233457789999999999999 5566666665677766654 233333334445
Q ss_pred HhcchhHHHHHHHHH
Q 012543 417 VMVDAEGREMRNRAA 431 (461)
Q Consensus 417 ll~~~~~~~~~~~a~ 431 (461)
++.| +.+-++++
T Consensus 376 ll~d---p~r~~air 387 (412)
T COG4370 376 LLGD---PQRLTAIR 387 (412)
T ss_pred HhcC---hHHHHHHH
Confidence 9999 55544443
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.64 E-value=0.0021 Score=49.02 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=49.4
Q ss_pred chhhhhcCCCCCCeEEEEEccccccC---C--HHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhH
Q 012543 262 RICISRLDKQAPKSVIYVSFGSIAAI---D--ETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGF 328 (461)
Q Consensus 262 ~~l~~~l~~~~~~~~v~vs~Gs~~~~---~--~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 328 (461)
..+..|+...+.++.|++|+||.... . ...+..++++++.++.++|..+....... +..+|+|+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 33678998888999999999998862 2 24788899999999999998888764322 56788764
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.62 E-value=0.028 Score=46.25 Aligned_cols=103 Identities=14% Similarity=0.108 Sum_probs=63.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcch
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCAA 95 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (461)
||++++.....| ...+++.|.++||+|++++............++++..++... ......+. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~-------k~~~~~~~----~--- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR-------KSPLNYIK----Y--- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC-------CccHHHHH----H---
Confidence 467777655556 457799999999999999995443333334788888885221 11111111 1
Q ss_pred hHHHHHHHHhhcccccCCCCccEEEeCCCch---hhHHHHHHcC-CCeEEEec
Q 012543 96 PFQDCLAKLLSNAEEKEEEPIACLITDASWF---FTHDVAESLK-LPRIVLRS 144 (461)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~---~a~~~A~~lg-iP~v~~~~ 144 (461)
.+. .++++. .+||+|.+..... .+..++...+ +|.|....
T Consensus 64 --~~l-~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 64 --FRL-RKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --HHH-HHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 122 233332 7899998876543 2445667888 88886543
No 131
>PRK14098 glycogen synthase; Provisional
Probab=96.35 E-value=0.041 Score=55.88 Aligned_cols=169 Identities=10% Similarity=-0.019 Sum_probs=90.1
Q ss_pred CeEEEEEcccccc-CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChh---hhhc
Q 012543 274 KSVIYVSFGSIAA-IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQ---EVLA 349 (461)
Q Consensus 274 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~---~lL~ 349 (461)
+..+++..|.... ...+.+...+..+...+.+++++-.+.. .. ...+ ....++.++|+.+...++.. .+++
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~-~~---~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~a 380 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDK-EY---EKRF-QDFAEEHPEQVSVQTEFTDAFFHLAIA 380 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCH-HH---HHHH-HHHHHHCCCCEEEEEecCHHHHHHHHH
Confidence 3456666777654 2233333333333333556554443321 00 0111 11122234667777888774 4888
Q ss_pred CCCCCcccccc---Cch-HHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHh---cchh
Q 012543 350 HPATGAFWTHC---GWN-STLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVM---VDAE 422 (461)
Q Consensus 350 ~~~~~~~I~HG---G~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll---~~~~ 422 (461)
.+|+ ++.-. |.| +.+||+++|+|.|+....+-........++. +-|...+. -+++++.++|.+++ +|
T Consensus 381 ~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~-~d~~~la~ai~~~l~~~~~-- 454 (489)
T PRK14098 381 GLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHD-YTPEALVAKLGEALALYHD-- 454 (489)
T ss_pred hCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCC-CCHHHHHHHHHHHHHHHcC--
Confidence 9998 76433 333 6789999999888876543211100111122 56766654 67899999999876 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 423 GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 423 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
+.. .++++. .+..+.-+-++.+++.++.+++
T Consensus 455 -~~~---~~~~~~---~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 455 -EER---WEELVL---EAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred -HHH---HHHHHH---HHhcCCCChHHHHHHHHHHHHH
Confidence 221 122222 2223556667777777766654
No 132
>PHA01633 putative glycosyl transferase group 1
Probab=96.14 E-value=0.025 Score=53.93 Aligned_cols=101 Identities=19% Similarity=0.117 Sum_probs=61.2
Q ss_pred CCCcee---eecChh---hhhcCCCCCccccc---cC-chHHHHHhhcCCccccCcc------cchh------hhhHHHH
Q 012543 334 GRGHIV---KWAPQQ---EVLAHPATGAFWTH---CG-WNSTLESMCEGVPMICQPC------HGEQ------MVIARYV 391 (461)
Q Consensus 334 ~~~~~~---~~vp~~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~------~~DQ------~~na~~v 391 (461)
+++.+. +++++. .++..+|+ ||.- =| -.++.||+++|+|+|+--. .+|+ .++..-.
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 455666 455554 47888888 7753 24 4478899999999998633 2332 2333222
Q ss_pred H--HhhhceeecCCccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 012543 392 S--DVWKVGLHLERKLERGEVERAIRRVMVDAEGREMRNRAAILKEKLD 438 (461)
Q Consensus 392 ~--~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 438 (461)
. .+ |.|...+ ..+++++.++|.++++..+......++++.++++.
T Consensus 279 ~~~~~-g~g~~~~-~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~ 325 (335)
T PHA01633 279 YDKEH-GQKWKIH-KFQIEDMANAIILAFELQDREERSMKLKELAKKYD 325 (335)
T ss_pred cCccc-Cceeeec-CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcC
Confidence 2 22 5565555 37999999999999543211223445555555553
No 133
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.18 Score=50.38 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHh------cCCCceeeecChh
Q 012543 272 APKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEML------DGRGHIVKWAPQQ 345 (461)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~------~~~~~~~~~vp~~ 345 (461)
++..+||++|+......++.+..-++-++..+--++|..+++.. ..+..++++.. .+|+++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~------~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD------AEINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc------HHHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 46789999999999899999999999999998889999888531 22333343332 2556666655544
Q ss_pred h---hhcCCCCCcccc---ccCchHHHHHhhcCCccccCcccchhhh--hHHHHHHhhhceeec
Q 012543 346 E---VLAHPATGAFWT---HCGWNSTLESMCEGVPMICQPCHGEQMV--IARYVSDVWKVGLHL 401 (461)
Q Consensus 346 ~---lL~~~~~~~~I~---HGG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~lG~G~~l 401 (461)
. =+..+|+ |+- =||..|+.|+|..|||+|..+ ++|+- |+..+...+|+-..+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 3 3445665 654 699999999999999999874 66643 444443323544333
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=96.06 E-value=0.18 Score=48.34 Aligned_cols=114 Identities=9% Similarity=0.074 Sum_probs=67.0
Q ss_pred eecChhh---hhcCCCCCcccc---ccC-chHHHHHhhcCCccccCcccc--hhh---hhHHHHHHh----------hhc
Q 012543 340 KWAPQQE---VLAHPATGAFWT---HCG-WNSTLESMCEGVPMICQPCHG--EQM---VIARYVSDV----------WKV 397 (461)
Q Consensus 340 ~~vp~~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~--DQ~---~na~~v~~~----------lG~ 397 (461)
.++|+.+ ++..+|+ ++. ..| -.++.|||++|+|+|+.-..+ |.- .|+..++.. -++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466544 6888998 652 233 458999999999999986543 321 122222110 034
Q ss_pred eeecCCccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 398 GLHLERKLERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 398 G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
|..+. .+.+++.+++.+++.|.+.+.++++.+.=+.... +.-+.+..++++.+.++++
T Consensus 274 G~~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~~ 331 (331)
T PHA01630 274 GYFLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEKY 331 (331)
T ss_pred ccccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhcC
Confidence 54443 3678888888888876210123333322222222 5566888888888888764
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.05 E-value=0.12 Score=51.89 Aligned_cols=137 Identities=19% Similarity=0.267 Sum_probs=89.7
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHH------hcCCCceeeecChh
Q 012543 272 APKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEM------LDGRGHIVKWAPQQ 345 (461)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~------~~~~~~~~~~vp~~ 345 (461)
+++.+||++|-..-..++..++..++.++..+-.++|.......-. .++... .+.++++.+-+...
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 4678999999888888999999999999999989999987753111 222221 12444555555544
Q ss_pred hhhcC-----CCCCccccccCchHHHHHhhcCCccccCcccchhhhhH-HHHHHhhhceeecCCccCHHHHHHHHHHHhc
Q 012543 346 EVLAH-----PATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIA-RYVSDVWKVGLHLERKLERGEVERAIRRVMV 419 (461)
Q Consensus 346 ~lL~~-----~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na-~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~ 419 (461)
+=.++ ..+.-+.+. |..|.++.|++|||||.+|.-.--...| ..+.. +|+|..+.+ +.++-.+.--++-.
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak--~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK--NREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh--hHHHHHHHHHHhhc
Confidence 42222 222225554 6789999999999999999765554444 44455 799876544 55555544445556
Q ss_pred c
Q 012543 420 D 420 (461)
Q Consensus 420 ~ 420 (461)
|
T Consensus 904 d 904 (966)
T KOG4626|consen 904 D 904 (966)
T ss_pred C
Confidence 6
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.98 E-value=1.1 Score=43.22 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=67.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEEcCCCCCCCcCCcccHHHHHHHHHHH
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFT-FCSIQDGLSETEASTTDFVALISVLHVK 92 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
||+++-....|++.-+.++.++|+++ +.+|++++.+.........+.+. ++.++.... .... ..+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~------~~~~---~~~~-- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA------KAGE---RKLA-- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh------cchH---HHHH--
Confidence 58888889999999999999999997 89999999875544333334553 333331100 0000 0010
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEE
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIV 141 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~ 141 (461)
.....+..+.+ .++|++|.-........++...|+|.-+
T Consensus 70 ---~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 ---NQFHLIKVLRA-------NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HHHHHHHHHHh-------CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 01123344544 7899999654445567788888999655
No 137
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.78 E-value=0.67 Score=43.23 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=62.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EEcCCCCCCCcCCcccHHHHHHHHHHH
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFTF-CSIQDGLSETEASTTDFVALISVLHVK 92 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
||+++-..+.|++.-+.++.++|+++ +-+|++++.+.........+.++- +.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 58888889999999999999999997 489999999744333332333422 2222110 00011
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEE
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIV 141 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~ 141 (461)
..+...+..+.+ .++|+++.=........++...+++...
T Consensus 66 --~~~~~~~~~l~~-------~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --GARRRLARALRR-------RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --HHHHHHHHHHhh-------cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 111233344444 6799998765554445566667776654
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.73 E-value=0.068 Score=40.40 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=53.5
Q ss_pred ccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhh-ceeecCCccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 012543 359 HCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWK-VGLHLERKLERGEVERAIRRVMVDAEGREMRNRAAILKEKL 437 (461)
Q Consensus 359 HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~ 437 (461)
+|-..-+.|++++|+|+|+-.. +.....+.. | -++.. . +.+++.++|..+++| +. ..+++++..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~--~-~~~el~~~i~~ll~~---~~---~~~~ia~~a 73 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY--N-DPEELAEKIEYLLEN---PE---ERRRIAKNA 73 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE--C-CHHHHHHHHHHHHCC---HH---HHHHHHHHH
Confidence 5556789999999999998764 233333322 3 22222 3 899999999999999 33 222333333
Q ss_pred HHHhhcCCChHHHHHHHHH
Q 012543 438 DLCTKQGSSSYQSLENLIS 456 (461)
Q Consensus 438 ~~~~~~~g~~~~~~~~l~~ 456 (461)
++-+.+..+..+.++.+++
T Consensus 74 ~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 74 RERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHHhCCHHHHHHHHHC
Confidence 3333367778888777753
No 139
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.67 E-value=0.16 Score=48.07 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=34.4
Q ss_pred cChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccc
Q 012543 342 APQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHG 382 (461)
Q Consensus 342 vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~ 382 (461)
=|+...|..+|. ++||=--.+.+.||+..|+|+.+++.-.
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 367789999997 6777777899999999999999999876
No 140
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.62 E-value=0.4 Score=46.41 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=67.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEE-cCCCCCCCcCCcccHHHHHHHHHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFTFCS-IQDGLSETEASTTDFVALISVLHV 91 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (461)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.........+.++-+- ++.. . .... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--~------~~~~----~-- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--H------GALE----I-- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--c------chhh----h--
Confidence 589999999999999999999999996 89999999865544434344444322 2211 0 0000 0
Q ss_pred HcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEE
Q 012543 92 KCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIV 141 (461)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~ 141 (461)
......+..+.+ .++|++|.=....-...++...|+|.-+
T Consensus 67 ---~~~~~l~~~lr~-------~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLRE-------KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHh-------cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 011223344544 7899998665455566777888888655
No 141
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.61 E-value=1.2 Score=43.23 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=68.3
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EEcCCCCCCCcCCcccHHHHHHH
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFTF-CSIQDGLSETEASTTDFVALISV 88 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (461)
+..+||+++-....|++.-..++.+.|+++ +.+|++++.+.........+.++- +.++.. .........
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~-------~~~~~~~~~- 74 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK-------KAGASEKIK- 74 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc-------cccHHHHHH-
Confidence 345689999999999999999999999998 899999998755444333344432 323211 000000000
Q ss_pred HHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEE
Q 012543 89 LHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIV 141 (461)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~ 141 (461)
.+...+..+.+ .++|++|.-........++...|.|..+
T Consensus 75 -------~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 75 -------NFFSLIKVLRA-------NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -------HHHHHHHHHhh-------CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 11123345554 7899999654444456677777888765
No 142
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.37 E-value=0.83 Score=43.89 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=64.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EEcCCCCCCCcCCcccHHHHHHHHHHH
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFTF-CSIQDGLSETEASTTDFVALISVLHVK 92 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
||+++-..+.|++.-..++.++|++. +.+|++++.+.........+.+.- +.++.. .. ... ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--~~---~~~---~~------ 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--HG---ALE---LT------ 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--cc---chh---hh------
Confidence 58899999999999999999999997 899999998644333333344422 222211 00 000 00
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEE
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIV 141 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~ 141 (461)
.....+..+.+ .++|++|.-....-...++...++|.-+
T Consensus 67 ---~~~~~~~~lr~-------~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 ---ERRRLGRSLRE-------ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---HHHHHHHHHhh-------cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 01123344444 6899999876555566677778888644
No 143
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.28 E-value=2 Score=38.74 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCc----e------eeecChhhhhcCCCCCccccccCchH
Q 012543 295 VAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGH----I------VKWAPQQEVLAHPATGAFWTHCGWNS 364 (461)
Q Consensus 295 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~----~------~~~vp~~~lL~~~~~~~~I~HGG~gs 364 (461)
+.+.+++.+..+++.++.. .|+.+......|+. + .++=|+-+.|..+|. +++|--..+.
T Consensus 189 l~k~l~~~g~~~lisfSRR----------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady-ii~TaDSinM 257 (329)
T COG3660 189 LVKILENQGGSFLISFSRR----------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY-IISTADSINM 257 (329)
T ss_pred HHHHHHhCCceEEEEeecC----------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce-EEEecchhhh
Confidence 4466777788888877654 23333333332221 1 144588999999998 4556667889
Q ss_pred HHHHhhcCCccccC
Q 012543 365 TLESMCEGVPMICQ 378 (461)
Q Consensus 365 ~~eal~~GvP~l~~ 378 (461)
..||...|+|+-++
T Consensus 258 ~sEAasTgkPv~~~ 271 (329)
T COG3660 258 CSEAASTGKPVFIL 271 (329)
T ss_pred hHHHhccCCCeEEE
Confidence 99999999999554
No 144
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.24 E-value=0.94 Score=43.54 Aligned_cols=105 Identities=17% Similarity=0.086 Sum_probs=67.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVK 92 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (461)
|+|+++-....|++.-.+++-..|+++ +.++++++.+.........+.+.-+..-+... .. .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~~------~~----------~ 65 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKK------KG----------L 65 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccccc------cc----------c
Confidence 599999999999999999999999998 59999999865444333223332222111100 00 0
Q ss_pred cchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEE
Q 012543 93 CAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVL 142 (461)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~ 142 (461)
-...+..+...+.+ .++|+||.=...+=...++...++|.-+-
T Consensus 66 ~~~~~~~l~~~lr~-------~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 66 GLKERLALLRTLRK-------ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred chHHHHHHHHHhhc-------cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 01111223344443 67999997766665677777888887763
No 145
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.14 E-value=0.26 Score=41.91 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=55.2
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCC---cCCcccHHHHHHHHHHHcchhHHHHHHHHhhcccccCCCCc
Q 012543 40 SKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSET---EASTTDFVALISVLHVKCAAPFQDCLAKLLSNAEEKEEEPI 116 (461)
Q Consensus 40 ~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 116 (461)
++||+|+|++....... . +|++...+...-... .....++....... ..+.+.+.+|.+. + +.|
T Consensus 1 q~gh~v~fl~~~~~~~~-~--~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg-----~av~~a~~~L~~~-G----f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P--PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRG-----QAVARAARQLRAQ-G----FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCC-C--CCcEEEEeCCCCCCCCCCCcccccHHHHHHHH-----HHHHHHHHHHHHc-C----CCC
Confidence 47999999996432222 2 588888886411111 11112222111111 1223344555555 3 899
Q ss_pred cEEEeCCCchhhHHHHHHc-CCCeEEEe
Q 012543 117 ACLITDASWFFTHDVAESL-KLPRIVLR 143 (461)
Q Consensus 117 Dlvi~D~~~~~a~~~A~~l-giP~v~~~ 143 (461)
|+|+....+-.+..+-+.+ ++|.+.+.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999998888888899999 99999864
No 146
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.83 E-value=0.053 Score=45.26 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcchhHHHHHHHHhhcc
Q 012543 30 PMLQLANILYSKGFSITIIHTKFNSPNP-SNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCAAPFQDCLAKLLSNA 108 (461)
Q Consensus 30 p~l~La~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (461)
-+..|+++|.++||+|+++++....... ....++.+..++-..... ..........+ ...+ ...+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~l-~~~~-- 71 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPW---PLRLLRFLRRL--------RRLL-AARR-- 71 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSS---GGGHCCHHHHH--------HHHC-HHCT--
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccch---hhhhHHHHHHH--------HHHH-hhhc--
Confidence 4678999999999999999986332221 223567777765211110 00011111111 1111 1111
Q ss_pred cccCCCCccEEEeCCCc-hhhHHHHH-HcCCCeEEEec
Q 012543 109 EEKEEEPIACLITDASW-FFTHDVAE-SLKLPRIVLRS 144 (461)
Q Consensus 109 ~~~~~~~pDlvi~D~~~-~~a~~~A~-~lgiP~v~~~~ 144 (461)
.+||+|.+.... .....++. ..++|+|....
T Consensus 72 -----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 72 -----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp --------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -----cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 789999988633 22233444 88999998653
No 147
>PLN02939 transferase, transferring glycosyl groups
Probab=94.82 E-value=0.21 Score=53.65 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=66.6
Q ss_pred CCCceeeecChh---hhhcCCCCCcccccc---C-chHHHHHhhcCCccccCcccc--hhhh--hHHHH-HHhhhceeec
Q 012543 334 GRGHIVKWAPQQ---EVLAHPATGAFWTHC---G-WNSTLESMCEGVPMICQPCHG--EQMV--IARYV-SDVWKVGLHL 401 (461)
Q Consensus 334 ~~~~~~~~vp~~---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~--DQ~~--na~~v-~~~lG~G~~l 401 (461)
+++.+..+.+.. .+++.+|+ ||.-. | -.+.+|||++|+|.|+....+ |.-. +...+ +.. +-|...
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 456777777764 48999998 77532 2 338899999999999876543 2211 11111 121 456555
Q ss_pred CCccCHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 402 ERKLERGEVERAIRRVMV----DAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 402 ~~~~~~~~l~~~i~~ll~----~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
.. .+++.+.++|.++++ | +..+++.. .. +....-+-+..++..++.++
T Consensus 914 ~~-~D~eaLa~AL~rAL~~~~~d---pe~~~~L~---~~---am~~dFSWe~~A~qYeeLY~ 965 (977)
T PLN02939 914 LT-PDEQGLNSALERAFNYYKRK---PEVWKQLV---QK---DMNIDFSWDSSASQYEELYQ 965 (977)
T ss_pred cC-CCHHHHHHHHHHHHHHhccC---HHHHHHHH---HH---HHHhcCCHHHHHHHHHHHHH
Confidence 54 588889999888775 4 33332222 11 12244556666666665544
No 148
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.78 E-value=0.84 Score=43.62 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=39.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKFNSPNPSNYPHFT 64 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~ 64 (461)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.........+.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 589999999999999999999999997 99999999864433333234443
No 149
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.85 E-value=1.1 Score=45.17 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=68.9
Q ss_pred eecChhh---hhcCCCCCcccc---ccCch-HHHHHhhcCCc----cccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 340 KWAPQQE---VLAHPATGAFWT---HCGWN-STLESMCEGVP----MICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 340 ~~vp~~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
+.+++.+ ++..+|+ ++. +=|.| ++.||+++|+| +|+--+.+- +. . ++-|..++. .+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~---~-l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQ---E-LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hH---H-hCCcEEECC-CCHH
Confidence 4456655 5778888 665 34644 78899999999 555544332 22 1 233555554 6899
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 409 EVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 409 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
++.++|.++++++. ..-+++.+++.+.+. ..+..+-++.+++.|.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 99999999998622 344555556666554 36788888888887753
No 150
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.83 E-value=0.58 Score=40.99 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=59.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEEcCCCC-CCC--c-CCcccHHHHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPS----NYPHFTFCSIQDGL-SET--E-ASTTDFVALI 86 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~ 86 (461)
||||+.-=-+. +---+.+|+++|++.||+|+++.+..+.+... ....++......+. +.. . .-...+..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 56666654333 34456789999988899999999985543322 11224443322111 111 1 1122333222
Q ss_pred HHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCC----------C---chhhHHHHHHcCCCeEEEecc
Q 012543 87 SVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDA----------S---WFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~----------~---~~~a~~~A~~lgiP~v~~~~~ 145 (461)
..... .+... .+||+||+-. + +..|+.-|...|||.|.++..
T Consensus 80 ~~al~-----------~~~~~------~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 KLALD-----------GLLPD------KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HHHHH-----------CTSTT------SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHH-----------hhhcc------CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 22222 22211 4599999632 1 234556677889999998866
No 151
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.29 E-value=0.19 Score=42.98 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=58.4
Q ss_pred EcCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCCCCCCC-----CC--CCCceEEEcCCCCCCCcCCcccHHHHHHHHH
Q 012543 20 FPLPFQGHINPMLQLANIL-YSK-GFSITIIHTKFNSPNP-----SN--YPHFTFCSIQDGLSETEASTTDFVALISVLH 90 (461)
Q Consensus 20 ~~~~~~GHi~p~l~La~~L-~~r-Gh~V~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
+-.++.||+.-|+.|.+.+ .++ .++..+++........ .+ ...-.+..++....-......+....+..
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~-- 80 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRA-- 80 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHH--
Confidence 3448899999999999999 444 4555555554322211 00 00012333332111111111111111111
Q ss_pred HHcchhHHHHHHHHhhcccccCCCCccEEEeCCCc--hhhHHHHHHc------CCCeEEEecc
Q 012543 91 VKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASW--FFTHDVAESL------KLPRIVLRSL 145 (461)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~--~~a~~~A~~l------giP~v~~~~~ 145 (461)
+-..+.-+.+ .+||+||++.-. .....+|..+ |.+.|.+-+.
T Consensus 81 ------~~~~~~il~r-------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 81 ------FLQSLRILRR-------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred ------HHHHHHHHHH-------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1222333344 789999999744 5567788888 9999987544
No 152
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=93.20 E-value=2.5 Score=38.62 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC----CCCCCceEEEcC-CCCCCCcCCcccHHHHH
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNP----SNYPHFTFCSIQ-DGLSETEASTTDFVALI 86 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (461)
.++||||+.-=-+. |---+.+|+++|++.| +|+++.|..+.+.. .-...+++..+. +.-.....-..++..-.
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 46788887653222 2234668899998888 79998887444322 112234444443 10000011122222221
Q ss_pred HHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCC----------C---chhhHHHHHHcCCCeEEEecc
Q 012543 87 SVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDA----------S---WFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~----------~---~~~a~~~A~~lgiP~v~~~~~ 145 (461)
.. .+..+.. .+||+||+-. + +.+|+.-|..+|||.|.+|..
T Consensus 81 ~l-----------al~~~~~-------~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 81 KV-----------ALSHILP-------EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred HH-----------HHHhhcC-------CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 11 1222332 5699999642 1 244555677889999998753
No 153
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.17 E-value=0.89 Score=38.42 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 23 PFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 23 ~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
...|=-.-+..|+++|+++||+|+++++..
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 355677788999999999999999998853
No 154
>PRK14099 glycogen synthase; Provisional
Probab=92.37 E-value=2 Score=43.65 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=54.9
Q ss_pred cCCCCCcccc---ccCch-HHHHHhhcCCccccCcccc--hhhhhHH-HHHHh-hhceeecCCccCHHHHHHHHHH---H
Q 012543 349 AHPATGAFWT---HCGWN-STLESMCEGVPMICQPCHG--EQMVIAR-YVSDV-WKVGLHLERKLERGEVERAIRR---V 417 (461)
Q Consensus 349 ~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~-~v~~~-lG~G~~l~~~~~~~~l~~~i~~---l 417 (461)
..+|+ |+. +=|.| +.+||+++|+|.|+....+ |.-.... ..+.. -+.|...+. -+++++.++|.+ +
T Consensus 368 a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~-~d~~~La~ai~~a~~l 444 (485)
T PRK14099 368 AGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP-VTADALAAALRKTAAL 444 (485)
T ss_pred hcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC-CCHHHHHHHHHHHHHH
Confidence 45777 764 34444 6689999998777654422 3211110 00000 035766665 688999999997 6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 418 MVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 418 l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
++| +..+++ ++.... ...-+-++.+++.++.+++
T Consensus 445 ~~d---~~~~~~---l~~~~~---~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 445 FAD---PVAWRR---LQRNGM---TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred hcC---HHHHHH---HHHHhh---hhcCChHHHHHHHHHHHHH
Confidence 667 333322 222211 1345566666666665543
No 155
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=91.71 E-value=1.5 Score=44.16 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=61.0
Q ss_pred eecChhh---hhcCCCCCcccc---ccCch-HHHHHhhcCCc----cccCcccchhhhhHHHHHHhhhceeecCCccCHH
Q 012543 340 KWAPQQE---VLAHPATGAFWT---HCGWN-STLESMCEGVP----MICQPCHGEQMVIARYVSDVWKVGLHLERKLERG 408 (461)
Q Consensus 340 ~~vp~~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 408 (461)
+++++.+ ++..+|+ +|. +-|.| ++.||+++|+| +|+--+.+- + +. ..-|..++. .+.+
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~---~~-~~~g~lv~p-~d~~ 415 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A---EE-LSGALLVNP-YDID 415 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h---hh-cCCCEEECC-CCHH
Confidence 6677765 5788888 663 34544 67899999999 444322211 1 11 123555554 6889
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012543 409 EVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYI 458 (461)
Q Consensus 409 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l 458 (461)
++.++|.+++++++ ...+++.++..+.+ ..-+...-++.+++.|
T Consensus 416 ~la~ai~~~l~~~~-~e~~~~~~~~~~~v-----~~~~~~~w~~~~l~~l 459 (460)
T cd03788 416 EVADAIHRALTMPL-EERRERHRKLREYV-----RTHDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHH-----HhCCHHHHHHHHHHhh
Confidence 99999999998721 12222222333332 3456777777777654
No 156
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.68 E-value=0.48 Score=39.51 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDG 71 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (461)
..|+|++...|+.|-.--++.+++.|.+.|++|-=+.++ ..+.-.+.-||+.+.+..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~-EVR~gGkR~GF~Ivdl~tg 61 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP-EVREGGKRIGFKIVDLATG 61 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee-eeecCCeEeeeEEEEccCC
Confidence 358999999999999999999999999999999855443 2222233468999988743
No 157
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.09 E-value=6.5 Score=42.60 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=61.5
Q ss_pred hhhcCCCCCccccc---cCch-HHHHHhhcCCc---cccCcccchhhhhHHHHHHhhh-ceeecCCccCHHHHHHHHHHH
Q 012543 346 EVLAHPATGAFWTH---CGWN-STLESMCEGVP---MICQPCHGEQMVIARYVSDVWK-VGLHLERKLERGEVERAIRRV 417 (461)
Q Consensus 346 ~lL~~~~~~~~I~H---GG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~lG-~G~~l~~~~~~~~l~~~i~~l 417 (461)
+++..+|+ |+.- -|.| +..|++++|+| ++++. |--..+.. +| -|+.+++ .+.+++.++|.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~----l~~~allVnP-~D~~~lA~AI~~a 440 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQS----LGAGALLVNP-WNITEVSSAIKEA 440 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhh----hcCCeEEECC-CCHHHHHHHHHHH
Confidence 47778888 7644 4766 67799999999 34443 22222222 34 4666665 7899999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 418 MVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 418 l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
|+.++ ..-+++.+++.+.++ ......-.+.+++.|+
T Consensus 441 L~m~~-~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 441 LNMSD-EERETRHRHNFQYVK-----THSAQKWADDFMSELN 476 (797)
T ss_pred HhCCH-HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHH
Confidence 99311 233444555555554 3455666666666654
No 158
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=87.43 E-value=15 Score=33.54 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCC
Q 012543 31 MLQLANILYSKGFSITIIHTKFNS 54 (461)
Q Consensus 31 ~l~La~~L~~rGh~V~~~~~~~~~ 54 (461)
+.+|+++|++ +|+|+++.+..+.
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCC
Confidence 6788888865 6899999887544
No 159
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=87.40 E-value=14 Score=33.90 Aligned_cols=108 Identities=9% Similarity=0.065 Sum_probs=55.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEEcCC-CCCCCcCCcccHHHHHHHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPS----NYPHFTFCSIQD-GLSETEASTTDFVALISVL 89 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (461)
||||+.-=-+. |---+.+|++.|...| +|+++.|..+.+... -...++...+.. +. +...-...+..-....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~-~~y~v~GTPaDCV~la 77 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGF-KVYATSGTPSDTIYLA 77 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEeccCCc-ceEEeCCCHHHHHHHH
Confidence 35555432222 3345678899998888 799988875443221 122344444431 11 0111122222222111
Q ss_pred HHHcchhHHHHHHHHhhcccccCCCCccEEEe----------C-CCc---hhhHHHHHHcCCCeEEEec
Q 012543 90 HVKCAAPFQDCLAKLLSNAEEKEEEPIACLIT----------D-ASW---FFTHDVAESLKLPRIVLRS 144 (461)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~----------D-~~~---~~a~~~A~~lgiP~v~~~~ 144 (461)
+..+ . .+||+||+ | .++ .+|+.-|..+|||.+.+|.
T Consensus 78 -----------l~~l-~-------~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 78 -----------TYGL-G-------RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred -----------HHhc-c-------CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 1122 1 67999985 3 222 3445567788999999975
No 160
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.19 E-value=15 Score=34.28 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=52.3
Q ss_pred CCCceeeecCh---hhhhcCCCCCccccc---cCchH-HHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccC
Q 012543 334 GRGHIVKWAPQ---QEVLAHPATGAFWTH---CGWNS-TLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLE 406 (461)
Q Consensus 334 ~~~~~~~~vp~---~~lL~~~~~~~~I~H---GG~gs-~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 406 (461)
.++.+.++++. ..++..+++ ++.- .|.|. +.||+++|+|+|... .......+.+. +.|. +.....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~-~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDG-ETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCC-CceE-ecCCCC
Confidence 55566788882 336777777 6655 35544 599999999996654 33334444441 3465 333226
Q ss_pred HHHHHHHHHHHhcc
Q 012543 407 RGEVERAIRRVMVD 420 (461)
Q Consensus 407 ~~~l~~~i~~ll~~ 420 (461)
.+.+.+++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999998
No 161
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.93 E-value=8.4 Score=35.05 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCC----CCCCCceEEEcCC--CCCCCcCCcccHHHHHHHHHHHcchhHHHHHHH
Q 012543 30 PMLQLANILYSKGFSITIIHTKFNSPNP----SNYPHFTFCSIQD--GLSETEASTTDFVALISVLHVKCAAPFQDCLAK 103 (461)
Q Consensus 30 p~l~La~~L~~rGh~V~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (461)
-+.+|+++|++.| +|+++.+..+.+.. .-...+++..++. +. +...-...+..-.... +..
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv~~g-----------l~~ 81 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCVILG-----------INE 81 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHHHHH-----------HHH
Confidence 3568899999888 89999887544332 1123344444431 11 0111112222222211 122
Q ss_pred HhhcccccCCCCccEEEeCC----------C---chhhHHHHHHcCCCeEEEecc
Q 012543 104 LLSNAEEKEEEPIACLITDA----------S---WFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 104 l~~~~~~~~~~~pDlvi~D~----------~---~~~a~~~A~~lgiP~v~~~~~ 145 (461)
+.. .+||+||+-. + +.+|+.-|..+|||.+.++..
T Consensus 82 l~~-------~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 82 LMP-------EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred hcc-------CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 222 5689998642 1 244566678889999998753
No 162
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=30 Score=32.97 Aligned_cols=125 Identities=18% Similarity=0.047 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC--CCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHH
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSP--NPSNYPHFTFCSIQDGLSETEASTTDFVALISVLH 90 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
+++|++++..|.-||-=.|.-=|..|+..|.+|.+++.-...+ .+.+.++++++.++.-. .......-..-..+.+.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~-~~~~~p~~~~l~lKvf~ 89 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP-FLQGGPRVLFLPLKVFW 89 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCc-ccCCCchhhhhHHHHHH
Confidence 5789999999999999999999999999999999988753322 33457899999987421 11111111111111221
Q ss_pred HHcchhHHHHHHHHhhcccccCCCCccEEEeCC-CchhhHHHH----HHcCCCeEEEecccHHH
Q 012543 91 VKCAAPFQDCLAKLLSNAEEKEEEPIACLITDA-SWFFTHDVA----ESLKLPRIVLRSLSVSS 149 (461)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~-~~~~a~~~A----~~lgiP~v~~~~~~~~~ 149 (461)
.+ -.++-.+... ..+|.++... -+.....+| ...|..+++=+....++
T Consensus 90 Qf-----l~Ll~aL~~~------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 90 QF-----LSLLWALFVL------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred HH-----HHHHHHHHhc------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 11 1222223222 6789888763 333344443 44588888866654443
No 163
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=86.29 E-value=4.4 Score=32.12 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=32.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
|+++.+.+..-|-.-+..++..|.++||+|.++..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 78999999999999999999999999999998855
No 164
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.84 E-value=1.7 Score=35.68 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+.+|++.+.++-+|-.-..-++..|.++|++|+++...
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 578999999999999999999999999999999999875
No 165
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=85.39 E-value=23 Score=32.33 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=23.5
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS 54 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~ 54 (461)
||||+.-=-+. |---+.+|+++|++ +|+|+++.+..+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 45555443222 22336678888864 6899999887444
No 166
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=84.54 E-value=10 Score=35.53 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCCce-eeecCh---hhhhcCCCCCccccc--cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-ccC
Q 012543 334 GRGHI-VKWAPQ---QEVLAHPATGAFWTH--CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLE 406 (461)
Q Consensus 334 ~~~~~-~~~vp~---~~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~ 406 (461)
+++.+ .+++|. ..+|..||++.|+|+ =|.||++-.++.|||+++-- +=+.|....+. |+-+-.+. .++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~e~--gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLTEQ--GLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHHhC--CCeEEecCCccc
Confidence 45554 377775 459999999888887 48999999999999998642 44556555443 77775555 788
Q ss_pred HHHHHHHHHHHhc
Q 012543 407 RGEVERAIRRVMV 419 (461)
Q Consensus 407 ~~~l~~~i~~ll~ 419 (461)
...+.++=+++..
T Consensus 281 ~~~v~e~~rql~~ 293 (322)
T PRK02797 281 EDIVREAQRQLAS 293 (322)
T ss_pred HHHHHHHHHHHHh
Confidence 8877777555443
No 167
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=84.17 E-value=1.4 Score=43.01 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=64.8
Q ss_pred CCCcee-eecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC------ccC
Q 012543 334 GRGHIV-KWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER------KLE 406 (461)
Q Consensus 334 ~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~------~~~ 406 (461)
++++.. +..+..++|..+|+ +||=-.. .+.|.++.++|+|....-.|+.... . |.-..... -.+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDySS-i~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDYSS-IIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS-T-HHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEechh-HHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCC
Confidence 344443 44567889999999 9998844 8899999999999877655554222 1 33222211 347
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012543 407 RGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLI 455 (461)
Q Consensus 407 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 455 (461)
.++|.++|..++++. ..++++.+++.+++-. ...|.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 899999999999873 3456667777777752 334555555555443
No 168
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=83.77 E-value=30 Score=31.56 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcchhHHHHHHHHh
Q 012543 30 PMLQLANILYSKGFSITIIHTKFNSPNPS----NYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCAAPFQDCLAKLL 105 (461)
Q Consensus 30 p~l~La~~L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (461)
-+.+|+++|++. |+|+++.+....+... -...+++..+.++ ...-...+..-... .+..+.
T Consensus 15 Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~---~~~v~GTPaDcV~~-----------gl~~l~ 79 (250)
T PRK00346 15 GIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG---FYAVDGTPTDCVHL-----------ALNGLL 79 (250)
T ss_pred hHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC---eEEECCcHHHHHHH-----------HHHhhc
Confidence 367889999988 7999999874443321 1122444443211 01111222222111 122232
Q ss_pred hcccccCCCCccEEEeCC----------C---chhhHHHHHHcCCCeEEEecc
Q 012543 106 SNAEEKEEEPIACLITDA----------S---WFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 106 ~~~~~~~~~~pDlvi~D~----------~---~~~a~~~A~~lgiP~v~~~~~ 145 (461)
. .+||+||+-. + +.+|+.-|...|||.+.++..
T Consensus 80 ~-------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 80 D-------PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred c-------CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 2 5699998642 1 234556677889999998753
No 169
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.43 E-value=10 Score=34.78 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+|+++. +.|. -..|++.|.++||+|+..+..
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEcc
Confidence 3555554 3332 678999999999999987664
No 170
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.05 E-value=9.5 Score=32.59 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe---CCCCC-C--CCCCCCCceEEEcCCCCCCCcCCcccHHHHHH
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIH---TKFNS-P--NPSNYPHFTFCSIQDGLSETEASTTDFVALIS 87 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~---~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (461)
+--|.+++..+.|-....+.+|-+.+.+|++|.++- ..... + ...+ .++++.....++.... .+..+..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~---~~~~~~~- 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWET---QNREADT- 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECCCCCeecC---CCcHHHH-
Confidence 346777888999999999999999999999997652 21011 1 1122 2788888776543221 1111111
Q ss_pred HHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCch
Q 012543 88 VLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWF 126 (461)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~ 126 (461)
......+....+.+.. .++|+||.|....
T Consensus 80 ---~~~~~~~~~a~~~l~~-------~~~DlvVLDEi~~ 108 (173)
T TIGR00708 80 ---AIAKAAWQHAKEMLAD-------PELDLVLLDELTY 108 (173)
T ss_pred ---HHHHHHHHHHHHHHhc-------CCCCEEEehhhHH
Confidence 1122222222233332 6799999997663
No 171
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=82.40 E-value=2.5 Score=43.22 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=60.9
Q ss_pred CCCceeeecC--h-hhhhcCCCCCcccccc---CchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCH
Q 012543 334 GRGHIVKWAP--Q-QEVLAHPATGAFWTHC---GWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLER 407 (461)
Q Consensus 334 ~~~~~~~~vp--~-~~lL~~~~~~~~I~HG---G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~ 407 (461)
.++.+.++.+ + ..++.++.+ +|.=+ |.++..||+.+|+|+| .......|++. .=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe---CCH
Confidence 4556667777 3 347777777 87665 7779999999999999 33344556652 455555 378
Q ss_pred HHHHHHHHHHhcchh-HHHHHHHHHHHHHHH
Q 012543 408 GEVERAIRRVMVDAE-GREMRNRAAILKEKL 437 (461)
Q Consensus 408 ~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~ 437 (461)
.+|.++|..+|++.. -..+...+-+.++++
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999932 123444444444444
No 172
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.38 E-value=2.4 Score=33.74 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=26.4
Q ss_pred CeEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQG---HINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~G---Hi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|||+|+.-|-.+ .-.-.++++.+-++|||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 578888776544 4467889999999999999998885
No 173
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=81.70 E-value=5.5 Score=36.88 Aligned_cols=41 Identities=22% Similarity=0.119 Sum_probs=33.5
Q ss_pred ceeeecChhhhhcCCCCCccccccCchHHHHHhhcCCccccCcc
Q 012543 337 HIVKWAPQQEVLAHPATGAFWTHCGWNSTLESMCEGVPMICQPC 380 (461)
Q Consensus 337 ~~~~~vp~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 380 (461)
.+.+-++-.+++.+++. +||-.+- +-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34466788899999998 7777654 88999999999999863
No 174
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.62 E-value=22 Score=30.98 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC---C---CCCCCCCceEEEcCCCCCCCcCCcccHHHHHH
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS---P---NPSNYPHFTFCSIQDGLSETEASTTDFVALIS 87 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (461)
+-.|.+++..+.|-....+.+|-+...+|++|.++---... . .....+++++.....++.... .+..+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~e~~- 97 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET---QDRERDI- 97 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC---CCcHHHH-
Confidence 56888999999999999999999999999999986532111 1 112235788888776533211 1111111
Q ss_pred HHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCch
Q 012543 88 VLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWF 126 (461)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~ 126 (461)
..+...+....+.+.. .++|+||.|....
T Consensus 98 ---~~~~~~~~~a~~~l~~-------~~ydlvVLDEi~~ 126 (191)
T PRK05986 98 ---AAAREGWEEAKRMLAD-------ESYDLVVLDELTY 126 (191)
T ss_pred ---HHHHHHHHHHHHHHhC-------CCCCEEEEehhhH
Confidence 2222223333333333 6799999997764
No 175
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=81.40 E-value=31 Score=34.48 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=82.5
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHhCC-CceEEEECCCccCCchhcccCchhHHHHhcCCCcee-eecC-h-hhhh
Q 012543 273 PKSVIYVSFGSIAAIDETKFLEVAWGLANSK-VPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIV-KWAP-Q-QEVL 348 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~-~~vp-~-~~lL 348 (461)
...++++| +...+..+....+.++ ..+=+..... . + +.+..+ ++. +|+.+. ++.+ . .+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te-~-s-~kL~~L-----~~y-~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE-M-S-SKLMSL-----DKY-DNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc-c-c-HHHHHH-----Hhc-CCcEEECCcChHHHHHHH
Confidence 45677776 2566666666666654 3332222211 0 0 001111 122 555655 6677 3 5599
Q ss_pred cCCCCCccccccC--chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHH-H
Q 012543 349 AHPATGAFWTHCG--WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGR-E 425 (461)
Q Consensus 349 ~~~~~~~~I~HGG--~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~-~ 425 (461)
..|++=+-|+||+ ..++.||+.+|+|++..=.... +...+.. |-... .-+.+++.++|.++|+| + .
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~----g~l~~-~~~~~~m~~~i~~lL~d---~~~ 414 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS----ENIFE-HNEVDQLISKLKDLLND---PNQ 414 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC----Cceec-CCCHHHHHHHHHHHhcC---HHH
Confidence 9999988888877 6799999999999998753311 1111111 22222 35789999999999999 5 4
Q ss_pred HHHHHHHHHHHH
Q 012543 426 MRNRAAILKEKL 437 (461)
Q Consensus 426 ~~~~a~~l~~~~ 437 (461)
++++..+-++..
T Consensus 415 ~~~~~~~q~~~a 426 (438)
T TIGR02919 415 FRELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHHHh
Confidence 566555555544
No 176
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.88 E-value=3.6 Score=42.10 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=46.7
Q ss_pred ChhhhhcCCCCCcccc---ccCch-HHHHHhhcCCccccCcccc-hhhhhHHHHHHhhhceeecCC------ccCHHHHH
Q 012543 343 PQQEVLAHPATGAFWT---HCGWN-STLESMCEGVPMICQPCHG-EQMVIARYVSDVWKVGLHLER------KLERGEVE 411 (461)
Q Consensus 343 p~~~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~lG~G~~l~~------~~~~~~l~ 411 (461)
+..+++..|++ +|. +=|+| ++.||+++|+|+|.....+ ..... ..+.+.-..|+.+.. .-+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35667888888 655 34544 8999999999999987532 11111 122210014665542 34668888
Q ss_pred HHHHHHhcc
Q 012543 412 RAIRRVMVD 420 (461)
Q Consensus 412 ~~i~~ll~~ 420 (461)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888865
No 177
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.73 E-value=22 Score=29.94 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=40.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC--C-CC---CCCCCCCCceEEEcCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK--F-NS---PNPSNYPHFTFCSIQDG 71 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~--~-~~---~~~~~~~~~~~~~~~~~ 71 (461)
-|.+++.++.|-....+.+|-+.+.+|++|.|+--- . .. ......+++++.....+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~ 65 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRG 65 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCC
Confidence 577788889999999999999999999999994321 1 11 11122357888887754
No 178
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=79.94 E-value=20 Score=33.39 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
++..+|.+...|+-|--.-.=.|++.|.++||+|-++.-+..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 356788999999999999999999999999999999876533
No 179
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=79.84 E-value=30 Score=32.99 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=59.8
Q ss_pred CCCce-eeecChhh---hhcCCCCCccccc--cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-ccC
Q 012543 334 GRGHI-VKWAPQQE---VLAHPATGAFWTH--CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLE 406 (461)
Q Consensus 334 ~~~~~-~~~vp~~~---lL~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~ 406 (461)
+++.+ .+++|.++ +|..||++.|+|. =|.|+++-.|+.|+|++.-- +=+.+-...+ .|+=+.-.. .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~~l~~--~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQDLKE--QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHHHHHh--CCCeEEeccccCC
Confidence 45554 47888654 8999999777775 58999999999999997642 3344444444 377765554 899
Q ss_pred HHHHHHHHHHHhc
Q 012543 407 RGEVERAIRRVMV 419 (461)
Q Consensus 407 ~~~l~~~i~~ll~ 419 (461)
.+.|.++=+++.+
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888865
No 180
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=79.81 E-value=3.2 Score=33.58 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=30.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
|||++...|+.+=+. ...+.++|+++|++|.++.++..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcH
Confidence 478887777766666 99999999999999999888633
No 181
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.66 E-value=16 Score=39.35 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=64.6
Q ss_pred eeeecChhh---hhcCCCCCccccc---cC-chHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHH
Q 012543 338 IVKWAPQQE---VLAHPATGAFWTH---CG-WNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEV 410 (461)
Q Consensus 338 ~~~~vp~~~---lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l 410 (461)
+.+++++.+ +++.+|+ ++.- -| ..++.|++++|+|-...|...+--.-+. + +.-|+.+++ .+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHH
Confidence 336677765 6778887 6654 25 4478999999776333332222111111 2 333666665 689999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 411 ERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 411 ~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
.++|.+++++++ ...+++.+++.+.++ ..+..+-++.+++.+++
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 999999998521 233444444444432 35666777777666553
No 182
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.65 E-value=3.3 Score=32.86 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=32.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
||++.+.++-.|.....-++..|.++|++|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 578899999999999999999999999999887753
No 183
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=78.50 E-value=17 Score=36.58 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=42.2
Q ss_pred HHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHhcchhHHHHHHHH
Q 012543 364 STLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLERGEVERAIRRVMVDAEGREMRNRA 430 (461)
Q Consensus 364 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a 430 (461)
++.|||++|+|++.. ++-.-+..|+. .--|...++ .-....+.+++.++..| ++++.++
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~ 440 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARM 440 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHH
Confidence 789999999999987 44444555555 355766666 33344799999999999 6665543
No 184
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=78.15 E-value=11 Score=33.49 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=34.8
Q ss_pred eEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012543 16 RLILFPLP--FQGHINPMLQLANILYSKGFSITIIHTKFNSPN 56 (461)
Q Consensus 16 ~il~~~~~--~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~ 56 (461)
+|+++|+| +-|-.--...|+..|+.+|++|.++-.+...+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRN 45 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRN 45 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchh
Confidence 88888875 779999999999999999999999887754443
No 185
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=78.13 E-value=5.9 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.+-++++..|...|......+|+.|.++|+.|...-.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4678888999999999999999999999999987544
No 186
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=77.55 E-value=42 Score=28.23 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=61.2
Q ss_pred EEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCC----CCc-----CCcccHHHHHHH
Q 012543 19 LFPLPFQGHINPML-QLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLS----ETE-----ASTTDFVALISV 88 (461)
Q Consensus 19 ~~~~~~~GHi~p~l-~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~ 88 (461)
.+.+...+.+..++ .+|.+|.++|++|.=+...................++++.. +.. .-..+...+.
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La-- 80 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALA-- 80 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHH--
Confidence 34455567777766 68999999999999766632222222234566666654321 111 0111221111
Q ss_pred HHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCch---------hhHHHHHHcCCCeEEEecc
Q 012543 89 LHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWF---------FTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~---------~a~~~A~~lgiP~v~~~~~ 145 (461)
..+ ..++.-+. ..+|++|.+-|.- .....|-..|||+++..+.
T Consensus 81 --~A~-----~~l~~al~-------~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 81 --EAS-----AALRRALA-------EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred --HHH-----HHHHHHHh-------cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 111 11222222 6799999997641 1233577779999997666
No 187
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.27 E-value=17 Score=34.54 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=31.2
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
||+|++. |+-|-..-..++|-.|++.|.+|.+++++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 6666665 788998889999999999999988888863
No 188
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=76.92 E-value=2.1 Score=37.10 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEc
Q 012543 14 GRRLILFPLPFQGHINP------------MLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSI 68 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p------------~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~ 68 (461)
.+||++...|+.=.+.| -.+||+++..+|++|+++..+..... ..++..+.+
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~---p~~~~~i~v 66 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP---PPGVKVIRV 66 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------TTEEEEE-
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc---cccceEEEe
Confidence 35666666666555544 35899999999999999998632111 235666654
No 189
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=74.53 E-value=4.7 Score=35.21 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.+||++.-.|+.|=+.-...++++|.++||+|.++.++
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 355787777676665554799999999999999999886
No 190
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=73.58 E-value=36 Score=30.97 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcchhHHHHHHHH
Q 012543 29 NPMLQLANILYSKGFSITIIHTKFNSPNPSN----YPHFTFCSIQDGLSETEASTTDFVALISVLHVKCAAPFQDCLAKL 104 (461)
Q Consensus 29 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (461)
--+.+|++.|+ .+++|+++.++.+.+.... ..-++...+.. ....-...+.... .-.+..+
T Consensus 14 ~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV-----------~lal~~l 78 (252)
T COG0496 14 PGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCV-----------ILGLNEL 78 (252)
T ss_pred HHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHH-----------HHHHHHh
Confidence 33557788888 9999999999855443221 12233222221 0001112222111 1122333
Q ss_pred hhcccccCCCCccEEEeCC----------C---chhhHHHHHHcCCCeEEEecc
Q 012543 105 LSNAEEKEEEPIACLITDA----------S---WFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 105 ~~~~~~~~~~~pDlvi~D~----------~---~~~a~~~A~~lgiP~v~~~~~ 145 (461)
.+. .+||+||+-. . +.+|+.=|..+|||.|.+|..
T Consensus 79 ~~~------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 79 LKE------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ccC------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 331 4599998642 1 234455578899999998755
No 191
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=71.34 E-value=98 Score=30.40 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=56.5
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCcee---eecChhhhhc
Q 012543 273 PKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIV---KWAPQQEVLA 349 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~---~~vp~~~lL~ 349 (461)
++|.|-+|+ ......-.+.+.+.|++.++++++.-..+. + ..-+|++-..+.+. +.-.....=.
T Consensus 184 ~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~--G--------G~aME~Li~~G~~~~VlDlTttEl~d~ 250 (403)
T PF06792_consen 184 DKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGT--G--------GRAMERLIREGQFDGVLDLTTTELADE 250 (403)
T ss_pred CCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCC--c--------hHHHHHHHHcCCcEEEEECcHHHHHHH
Confidence 577787764 223446677888899999999876654442 1 11222222222332 3222221111
Q ss_pred CCCCCccccccCchHHHHHhhcCCccccCcccch
Q 012543 350 HPATGAFWTHCGWNSTLESMCEGVPMICQPCHGE 383 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~D 383 (461)
.+. =|..+|-.=.-.|...|+|+|+.|-.-|
T Consensus 251 l~G---Gv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 251 LFG---GVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HhC---CCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 122 3667888888999999999999996543
No 192
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=70.18 E-value=47 Score=33.01 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=23.2
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEEEec
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIVLRS 144 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~ 144 (461)
.+||++|.. ..+..+|+++|||++.+..
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 789999988 3367799999999999653
No 193
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=70.05 E-value=61 Score=32.30 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=54.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcc
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCA 94 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (461)
.|+.++..+.. .+++++-|.+-|-+|..+++........+ ..... + +.+...... .
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~-~~~~~~v~~---------------~ 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--L-EMLGVEVKY---------------R 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--H-HhcCCCcee---------------c
Confidence 47777776655 88899999999999999877522111000 00000 0 000000000 0
Q ss_pred hhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEe
Q 012543 95 APFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~ 143 (461)
..+.+.++.+.+ .+||++|.... +..+|+++|||++.+.
T Consensus 342 ~dl~~~~~~l~~-------~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLEDDMEAVLE-------FEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHHHHHHHHhh-------CCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 112222233332 78999998832 5668999999999965
No 194
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.99 E-value=7.9 Score=31.72 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+++.||++.+.|..||-.-.--+++.|++.|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 468899999999999999999999999999999998554
No 195
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=69.47 E-value=52 Score=29.88 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=29.9
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+|++... |+-|-..=...||..|++.|++|..+=-
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 6666544 8999999999999999999999998754
No 196
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=69.31 E-value=66 Score=26.79 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=68.0
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCc
Q 012543 276 VIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGA 355 (461)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~ 355 (461)
.|-|-+||.. +....+.+...|+..+..+-+.+.+-+ ..|+.+.+ ++...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH--------R~p~~l~~----------~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH--------RTPERLLE----------FVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT--------TSHHHHHH----------HHHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--------CCHHHHHH----------HHHHhcc-CCCEE--
Confidence 3556667655 567788888999998866544444432 24444321 1100000 22344
Q ss_pred cccccCch----HHHHHhhcCCccccCcccchhhhhH----HHHHHhhhceeecCC---ccCHHHHHHHHHHHhcchhHH
Q 012543 356 FWTHCGWN----STLESMCEGVPMICQPCHGEQMVIA----RYVSDVWKVGLHLER---KLERGEVERAIRRVMVDAEGR 424 (461)
Q Consensus 356 ~I~HGG~g----s~~eal~~GvP~l~~P~~~DQ~~na----~~v~~~lG~G~~l~~---~~~~~~l~~~i~~ll~~~~~~ 424 (461)
||.=.|.. ++..++. -.|+|.+|...++.... ..++---|+++..-. ..++..+...|-.+ .| +
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T----H
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CC---H
Confidence 88877743 3333333 89999999987754322 222210144433222 22333333333322 35 6
Q ss_pred HHHHHHHHHHHHHHH
Q 012543 425 EMRNRAAILKEKLDL 439 (461)
Q Consensus 425 ~~~~~a~~l~~~~~~ 439 (461)
.++++.+..++++++
T Consensus 134 ~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 134 ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 889999888888874
No 197
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=68.60 E-value=73 Score=29.32 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHHhC---CCeEEEEeCCCCCCCC----CCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHcchhHHHHHHH
Q 012543 31 MLQLANILYSK---GFSITIIHTKFNSPNP----SNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKCAAPFQDCLAK 103 (461)
Q Consensus 31 ~l~La~~L~~r---Gh~V~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (461)
+.+|++.|... |++|+++.|....+.. .-...++...+.++ ...-..++..-.... +..
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~---~yav~GTPaDCV~la-----------l~~ 81 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR---RFAAEGSPADCVLAA-----------LYD 81 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC---eEEEcCchHHHHHHH-----------HHH
Confidence 45667777663 4799999987544322 21233555554321 111122232222111 122
Q ss_pred HhhcccccCCCCccEEEeC----------CCc---hhhHHHHHHcCCCeEEEec
Q 012543 104 LLSNAEEKEEEPIACLITD----------ASW---FFTHDVAESLKLPRIVLRS 144 (461)
Q Consensus 104 l~~~~~~~~~~~pDlvi~D----------~~~---~~a~~~A~~lgiP~v~~~~ 144 (461)
+... .+||+||+- .++ .+|+.-|..+|||.+.+|.
T Consensus 82 ~~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 82 VMKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred hcCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 2210 469999963 222 3455567788999999874
No 198
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=68.59 E-value=11 Score=38.01 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=40.3
Q ss_pred CCCeEEEEcCCCccCHHHHH------------HHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEc
Q 012543 13 KGRRLILFPLPFQGHINPML------------QLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSI 68 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l------------~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~ 68 (461)
+.+||++...|+.=.+.|.. +||+++..+|++||+++.+.... ...+++++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---~p~~v~~i~V 319 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---DPQGVKVIHV 319 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---CCCCceEEEe
Confidence 57899999999988888764 89999999999999999763322 1245666654
No 199
>PRK09620 hypothetical protein; Provisional
Probab=65.51 E-value=15 Score=33.08 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLPFQGHINP------------MLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p------------~l~La~~L~~rGh~V~~~~~~ 51 (461)
.++|++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45677665554444332 257899999999999998764
No 200
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=65.00 E-value=28 Score=29.47 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=28.0
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 20 FPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 20 ~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.+-|+.|-..-.+.||..|+++|++|.++-.+
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34478899999999999999999999998775
No 201
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=64.41 E-value=1.4e+02 Score=28.81 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=49.1
Q ss_pred CHHHHHHHH-HHHHhC-CCceEEEECCCccCCchhcccCchhHHH-HhcCCCceeeecChhh---hhcCCCCCccccccC
Q 012543 288 DETKFLEVA-WGLANS-KVPFLWVVRPGLVRGAEWIELLPRGFLE-MLDGRGHIVKWAPQQE---VLAHPATGAFWTHCG 361 (461)
Q Consensus 288 ~~~~~~~~~-~a~~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~vp~~~---lL~~~~~~~~I~HGG 361 (461)
..+++..++ +.+.+. +.+|++.-.+.. . ..+.+-.++ .+.+++.+.+-+|++. +|.+.++ |++-.=
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk--~----i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSl 280 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPK--R----IDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSL 280 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcc--c----chHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHH
Confidence 345555544 455544 456655543331 1 111121111 2457888889999865 7888887 776543
Q ss_pred ----chHHHHHhhcCCccccC
Q 012543 362 ----WNSTLESMCEGVPMICQ 378 (461)
Q Consensus 362 ----~gs~~eal~~GvP~l~~ 378 (461)
.-++.||+.+|.|+|..
T Consensus 281 TEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 23678999999998854
No 202
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=64.22 E-value=13 Score=33.63 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=52.3
Q ss_pred CCeEEEEEcccccc---CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCc-eeee--cCh-h
Q 012543 273 PKSVIYVSFGSIAA---IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGH-IVKW--APQ-Q 345 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~~~~--vp~-~ 345 (461)
+++.|.+..|+... .+.+.+..+++.+.+.++++++..+.... . ...-..+.+....++. +.+- +.+ .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-E----KEIADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-H----HHHHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-H----HHHHHHHHHhcccceEeecCCCCHHHHH
Confidence 56778888888664 67788999999998877665444433210 0 0011111111111111 2121 223 4
Q ss_pred hhhcCCCCCccccccCchHHHHHhhcCCccccC
Q 012543 346 EVLAHPATGAFWTHCGWNSTLESMCEGVPMICQ 378 (461)
Q Consensus 346 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 378 (461)
.++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 58889997 7765 467899999999999988
No 203
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=64.11 E-value=9.4 Score=33.09 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=32.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+||++.-.|+.|=+.-.+.+.++|++.|++|+++.++
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 3678877788888888889999999999999998885
No 204
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=63.72 E-value=23 Score=33.88 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=31.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012543 20 FPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS 54 (461)
Q Consensus 20 ~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~ 54 (461)
++.|+.|-.=-.+.|++.|.++|++|.+++-.+..
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 67799999999999999999999999999987553
No 205
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.52 E-value=15 Score=32.30 Aligned_cols=39 Identities=10% Similarity=-0.017 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++.+|++.+.++-.|-....-++.-|..+|++|++++..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 457999999999999999999999999999999998875
No 206
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=62.78 E-value=15 Score=32.35 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++.+|++.+.++-.|-....-++.-|..+|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 357999999999999999999999999999999988764
No 207
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.38 E-value=60 Score=32.49 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~ 143 (461)
.+||++|.... ...+|+++|||++.++
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 67999999853 5788999999999865
No 208
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=60.81 E-value=53 Score=32.85 Aligned_cols=88 Identities=22% Similarity=0.247 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHHHc
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHVKC 93 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (461)
.+|+++...+ .....+++.|.+.|-+|..+......+.. ..+. .......+..
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~--------~~~~----~~~~~~~D~~---------- 363 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLL--------QKLP----VETVVIGDLE---------- 363 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHH--------HhCC----cCcEEeCCHH----------
Confidence 4677777533 46788899999999999887775332211 0011 1100011111
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEe
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~ 143 (461)
.++++++. .++|++|.+.. ...+|+++|||++.+.
T Consensus 364 ------~l~~~i~~------~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 ------DLEDLACA------AGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred ------HHHHHHhh------cCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 11223322 67999998853 4778999999999864
No 209
>PRK05920 aromatic acid decarboxylase; Validated
Probab=60.69 E-value=13 Score=32.70 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
.+||++.-.|+.+= +=...+.++|.+.||+|+++.++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChh
Confidence 45787766565554 688999999999999999999863
No 210
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=60.39 E-value=91 Score=26.30 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=21.9
Q ss_pred CccccccCch------HHHHHhhcCCccccCcc
Q 012543 354 GAFWTHCGWN------STLESMCEGVPMICQPC 380 (461)
Q Consensus 354 ~~~I~HGG~g------s~~eal~~GvP~l~~P~ 380 (461)
+++++|+|-| .+++|...++|+|++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3488888855 77899999999999963
No 211
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=60.08 E-value=79 Score=30.42 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGF-SITIIHT 50 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh-~V~~~~~ 50 (461)
++.+|+++..|+.| -.+|+.|+..|+ +++++-.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 56799999998877 678999999998 6777655
No 212
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=59.93 E-value=9.4 Score=34.42 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 012543 32 LQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 32 l~La~~L~~rGh~V~~~~~~ 51 (461)
.+||++|.++||+|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 47889999999999998753
No 213
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.67 E-value=16 Score=29.19 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=33.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+++.+.++-.|..-..-++.-|...|++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 578899999999999999999999999999998874
No 214
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=59.60 E-value=1.1e+02 Score=28.24 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLS 73 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (461)
++||+++.+++...-. ..+..|.++|++|.++..............+..+-+|.++.
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCC
Confidence 4689998887776443 55788888999999887632111112234677888887653
No 215
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.57 E-value=1.2e+02 Score=28.09 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=29.0
Q ss_pred ceeeecChhh---hhcCCCCCccccccCchHHHHHhhcCCccc
Q 012543 337 HIVKWAPQQE---VLAHPATGAFWTHCGWNSTLESMCEGVPMI 376 (461)
Q Consensus 337 ~~~~~vp~~~---lL~~~~~~~~I~HGG~gs~~eal~~GvP~l 376 (461)
...+|+||++ +|..||+ -+- -|--|+.-|..+|+|.+
T Consensus 241 vklPFvpqddyd~LL~lcD~--n~V-RGEDSFVRAq~agkPfl 280 (370)
T COG4394 241 VKLPFVPQDDYDELLWLCDF--NLV-RGEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEecCCcHhHHHHHHHhccc--cee-ecchHHHHHHHcCCCcE
Confidence 4559999855 9999997 333 35679999999999986
No 216
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=58.25 E-value=1.4e+02 Score=31.93 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=60.2
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCcCCcccHHHHHHHHHH-Hc
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDGLSETEASTTDFVALISVLHV-KC 93 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (461)
.|++.+. +..|-..-.+.|++.|.++|.+|.++=|-.. . ++. .......... ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~-~-----------p~~------------~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ-P-----------PLT------------MSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc-C-----------CCC------------HHHHHHHHhccCC
Confidence 5666544 4689999999999999999999999765211 1 000 0000000000 11
Q ss_pred chhHHHHHHHHhhcccccCCCCccEEEeCCCch---------hhHHHHHHcCCCeEEEeccc
Q 012543 94 AAPFQDCLAKLLSNAEEKEEEPIACLITDASWF---------FTHDVAESLKLPRIVLRSLS 146 (461)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~---------~a~~~A~~lgiP~v~~~~~~ 146 (461)
...+...++.+.+. . .+.|+||.|.... ....+|+.++.|++.+....
T Consensus 60 ~~~~~~I~~~~~~l-~----~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHAL-A----KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHHh-c----cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 11222223333221 1 5689999886432 23668999999999988663
No 217
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=58.25 E-value=13 Score=31.97 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=23.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|||.++. +.|++- -.|+++...|||+||-++..
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 4666653 334433 25789999999999998875
No 218
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=57.96 E-value=39 Score=32.11 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=31.7
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012543 20 FPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS 54 (461)
Q Consensus 20 ~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~ 54 (461)
++.|+.|-.--.+.||++|++||..+.+++-.+..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 67799999999999999999999999999987553
No 219
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=57.20 E-value=39 Score=33.76 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.3
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~ 143 (461)
.+||+||.+.. ...+|+++|+|++.++
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 67999999964 3678889999998764
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=57.14 E-value=17 Score=33.36 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
...++|+..++.|-..=..+||.+|..+|+.|+|++.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45788898899999999999999999889999998874
No 221
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=56.29 E-value=1.4e+02 Score=26.13 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=31.6
Q ss_pred eEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 16 RLILFPLP-FQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~~~~~-~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
.+-|++.| ..|-.--++.-++....+|-.|.++.+..+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 56555554 789999999999999999999999998733
No 222
>PRK10867 signal recognition particle protein; Provisional
Probab=56.16 E-value=66 Score=32.12 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSK-GFSITIIHTKF 52 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~r-Gh~V~~~~~~~ 52 (461)
+..|+++..++.|-.--...||..|+.+ |++|.+++.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 4567778888999999999999999999 99999998863
No 223
>PLN02470 acetolactate synthase
Probab=55.62 E-value=30 Score=36.16 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=51.6
Q ss_pred EccccccCC--HHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecCh-hhh-------hc
Q 012543 280 SFGSIAAID--ETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQ-QEV-------LA 349 (461)
Q Consensus 280 s~Gs~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~-~~l-------L~ 349 (461)
+|||....+ ....+.+++.|++.|.+.|+-+.++.. ..+-+.+.+ ..+++++.--.. .+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~------~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS------MEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc------HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 466655422 233567888888888888888877641 111122210 112222211110 000 11
Q ss_pred CCCCCccccccCch------HHHHHhhcCCccccCcc
Q 012543 350 HPATGAFWTHCGWN------STLESMCEGVPMICQPC 380 (461)
Q Consensus 350 ~~~~~~~I~HGG~g------s~~eal~~GvP~l~~P~ 380 (461)
.-..+++++|.|-| .+++|.+.++|+|++.-
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 12345588898855 78899999999999953
No 224
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=55.05 E-value=25 Score=31.30 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++.+|++.+.++-.|-....-++..|..+|++|+++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 457999999999999999999999999999999998875
No 225
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=54.58 E-value=46 Score=31.55 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=31.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012543 20 FPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS 54 (461)
Q Consensus 20 ~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~ 54 (461)
++.|+.|-.=-.+.|++.|.++|++|.+++-.+..
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 66799999999999999999999999999986554
No 226
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.35 E-value=60 Score=32.28 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
+..|+++..++.|-.--+..||..|+.+|++|.+++.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 456778888899999999999999999999999998863
No 227
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=53.09 E-value=19 Score=31.16 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=31.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
+||++...|+.|=+. ...+.+.|+++|++|.++.++..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhH
Confidence 378887777777665 79999999999999999888643
No 228
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.63 E-value=17 Score=33.59 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCCCCccccccCchHHHHHhh------cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 350 HPATGAFWTHCGWNSTLESMC------EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+|+ +|+-||=||+..++. .++|++.+-.. .+|- +. +.+++++.+.+.+++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGF-L~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGF-YT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Ccee-cc-cCCHHHHHHHHHHHHcC
Confidence 4566 999999999999976 47888777421 1121 11 45667777777777765
No 229
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=52.61 E-value=24 Score=34.73 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=26.7
Q ss_pred eEEE-EcCCCccCHHHHHHHHHHHHhCCCeEEE
Q 012543 16 RLIL-FPLPFQGHINPMLQLANILYSKGFSITI 47 (461)
Q Consensus 16 ~il~-~~~~~~GHi~p~l~La~~L~~rGh~V~~ 47 (461)
+|++ -+.++.|-..-.+.|.++|++||++|.=
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 4455 4556889999999999999999999974
No 230
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.46 E-value=14 Score=33.31 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=23.1
Q ss_pred ccEEE-eCCCc-hhhHHHHHHcCCCeEEEecc
Q 012543 116 IACLI-TDASW-FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 116 pDlvi-~D~~~-~~a~~~A~~lgiP~v~~~~~ 145 (461)
||+++ .|+.. -.|..=|.++|||+|.+..+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 88876 55544 55666799999999998766
No 231
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=52.12 E-value=98 Score=26.87 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC-----CCCCCC--CCCceEEEcCCCCCCCcCCcccHHHHH
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN-----SPNPSN--YPHFTFCSIQDGLSETEASTTDFVALI 86 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+.-|.+++..+.|-.-..+.+|-+-.-+|.+|.++---.. ...... ..++.|+-.++++..... +..+..
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~---~~~~d~ 104 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQ---DREADI 104 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCc---CcHHHH
Confidence 4457777878889888777777666667777776542110 011111 145777777765543221 111111
Q ss_pred HHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCch
Q 012543 87 SVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWF 126 (461)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~ 126 (461)
..+...+....+.+.+ .++|+||.|.+..
T Consensus 105 ----~aa~~~w~~a~~~l~~-------~~ydlviLDEl~~ 133 (198)
T COG2109 105 ----AAAKAGWEHAKEALAD-------GKYDLVILDELNY 133 (198)
T ss_pred ----HHHHHHHHHHHHHHhC-------CCCCEEEEehhhH
Confidence 3333333444444444 7899999998775
No 232
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=51.87 E-value=21 Score=33.44 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=37.3
Q ss_pred cCCCCCccccccCchHHHHHhhc----CCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 349 AHPATGAFWTHCGWNSTLESMCE----GVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
..+++ +|+-||-||+++++.. ++|++.+-+. .+|- +. ..+.+++.+.|.+++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGF-L~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGF-IT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccc-cc-cCCHHHHHHHHHHHHcC
Confidence 45677 9999999999999773 6787766310 1121 11 46778888888888766
No 233
>PRK14098 glycogen synthase; Provisional
Probab=51.82 E-value=26 Score=35.71 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 12 KKGRRLILFPLP------FQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 12 ~~~~~il~~~~~------~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
++.|||++++.- +.|=-.-.-+|.++|+++||+|.++.|.+
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 345799987641 33444456688999999999999999964
No 234
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.80 E-value=28 Score=28.36 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=34.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.+|++.+.++-+|-.----++..|.+.|++|..+...
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~ 38 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVL 38 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCC
Confidence 4899999999999999999999999999999998774
No 235
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=51.58 E-value=11 Score=32.31 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=39.7
Q ss_pred cCCCCCccccccCchHHHHHhhcCCccccCcccc-----------------------hhhhhHHHHHHhhhceeecCCcc
Q 012543 349 AHPATGAFWTHCGWNSTLESMCEGVPMICQPCHG-----------------------EQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~-----------------------DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
..+++ +|++||......... ++|+|-++..+ ........+++.+|+-+..-.--
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~ 109 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYD 109 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEES
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEEC
Confidence 34555 999999998888877 99999999742 22333455555344433332234
Q ss_pred CHHHHHHHHHHHhcc
Q 012543 406 ERGEVERAIRRVMVD 420 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~ 420 (461)
+.+++...|.++..+
T Consensus 110 ~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 110 SEEEIEAAIKQAKAE 124 (176)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 677777777777654
No 236
>PRK05595 replicative DNA helicase; Provisional
Probab=51.16 E-value=29 Score=34.82 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=31.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILY-SKGFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~-~rGh~V~~~~~~~~ 53 (461)
=+++...|+.|-..-++.+|..++ +.|+.|.|++.+..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 345677789999999999998876 56999999998743
No 237
>PRK06321 replicative DNA helicase; Provisional
Probab=51.12 E-value=56 Score=33.05 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=31.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYS-KGFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~-rGh~V~~~~~~~~ 53 (461)
=+++...|+.|-..-.+.+|...+. .|..|.|++-+..
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3456777899999999999999874 5999999988743
No 238
>PRK14099 glycogen synthase; Provisional
Probab=50.79 E-value=27 Score=35.52 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCCeEEEEcC---C---CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 13 KGRRLILFPL---P---FQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 13 ~~~~il~~~~---~---~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
++|||++++. | +.|=-.-.-+|.++|+++||+|.++.|.+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4688988764 1 33444456688899999999999999964
No 239
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.60 E-value=1.1e+02 Score=27.52 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=22.0
Q ss_pred CccEEEeCCCchh---hHHHHHHcCCCeEE
Q 012543 115 PIACLITDASWFF---THDVAESLKLPRIV 141 (461)
Q Consensus 115 ~pDlvi~D~~~~~---a~~~A~~lgiP~v~ 141 (461)
+-++.+.|..+.+ +..+|...|||++.
T Consensus 149 ~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 149 ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 3699999987743 46689999999988
No 240
>PRK04296 thymidine kinase; Provisional
Probab=50.37 E-value=83 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=29.5
Q ss_pred eEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLP-FQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~-~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.|.+++.+ +.|-..-++.++.++..+|.+|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 56565654 999999999999999999999998854
No 241
>PRK04940 hypothetical protein; Provisional
Probab=50.20 E-value=38 Score=29.16 Aligned_cols=31 Identities=0% Similarity=0.021 Sum_probs=26.6
Q ss_pred CccEEEeCCCc-hhhHHHHHHcCCCeEEEecc
Q 012543 115 PIACLITDASW-FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 115 ~pDlvi~D~~~-~~a~~~A~~lgiP~v~~~~~ 145 (461)
+++++|..++. ++|..+|+++|+|.|.+.|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46788888765 89999999999999998776
No 242
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=50.13 E-value=25 Score=30.77 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
-++||.+-..|+-|-.+.|+.=|++|+++|.+|.+..-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 367999999999999999999999999999999987664
No 243
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.89 E-value=21 Score=33.34 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=37.5
Q ss_pred hhcCCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 347 VLAHPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
+...+|+ +|+-||-||+..+.. .++|++.+-.. .+|- +. ..+.+++.+++.+++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-Lt-~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-LT-DITVDEAEKFFQAFFQG 120 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-CC-cCCHHHHHHHHHHHHcC
Confidence 3445777 999999999998866 37788766321 0111 11 46677777888887765
No 244
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.41 E-value=23 Score=33.25 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=40.0
Q ss_pred hhhcCCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 346 EVLAHPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 346 ~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+...+|+ +|+=||=||+..+.. .++|++.+-+. .+| -+. ..+++++.+++.+++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lG-FLt-~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLG-FLA-TVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCC-ccc-ccCHHHHHHHHHHHHcC
Confidence 34445777 999999999999877 37888776321 112 111 56778888888888876
No 245
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=49.14 E-value=26 Score=36.18 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=51.0
Q ss_pred cChhhhhcCCCCCccccc---cCchHHHHHhhcCCccccCcccc-----hhhhhHHHHHHhhhceeecCCccCHHHHHHH
Q 012543 342 APQQEVLAHPATGAFWTH---CGWNSTLESMCEGVPMICQPCHG-----EQMVIARYVSDVWKVGLHLERKLERGEVERA 413 (461)
Q Consensus 342 vp~~~lL~~~~~~~~I~H---GG~gs~~eal~~GvP~l~~P~~~-----DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~ 413 (461)
+++.+++..|++++|-+= =|+ |-+||++.|||.|..=+.+ .+... .. .. .|+-+.-.+..+.++..+.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~-~~-~GV~VvdR~~~n~~e~v~~ 536 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIE-DP-EE-YGVYVVDRRDKNYDESVNQ 536 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS--HH-GG-GTEEEE-SSSS-HHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhc-cC-cC-CcEEEEeCCCCCHHHHHHH
Confidence 356777777887555541 233 8999999999999876532 22222 11 23 2666544335666666666
Q ss_pred HHHHhcc-----h-hHHHHHHHHHHHHHHH
Q 012543 414 IRRVMVD-----A-EGREMRNRAAILKEKL 437 (461)
Q Consensus 414 i~~ll~~-----~-~~~~~~~~a~~l~~~~ 437 (461)
|.+.|-+ . +....|++++++++.+
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 6665532 1 2456788888887765
No 246
>PRK06849 hypothetical protein; Provisional
Probab=49.07 E-value=32 Score=33.78 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++++|+++.... .-.+++++.|.++||+|+++...
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888875332 25899999999999999998774
No 247
>PRK13768 GTPase; Provisional
Probab=49.04 E-value=49 Score=30.31 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=31.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.+++...++.|-..-+..++..|..+|++|.++..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 566677789999999999999999999999998765
No 248
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.92 E-value=2.5e+02 Score=26.99 Aligned_cols=279 Identities=13% Similarity=0.069 Sum_probs=132.0
Q ss_pred HHHHHhhcccccCCCCccEEEeCCCchhh-HHHHHHcCCCeEEEecccHHHHHHHhhhhhhhhcCCCCCCCCCCCcccCC
Q 012543 100 CLAKLLSNAEEKEEEPIACLITDASWFFT-HDVAESLKLPRIVLRSLSVSSSLVYAALPVLSQKGYFPIQDSHDLEAPVP 178 (461)
Q Consensus 100 ~~~~l~~~~~~~~~~~pDlvi~D~~~~~a-~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 178 (461)
.++.+.+ ..||+-|-...+... ....+..++|++.+...|..+..+........-.
T Consensus 142 ~~Eai~r-------~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s---------------- 198 (465)
T KOG1387|consen 142 AFEAIIR-------FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKS---------------- 198 (465)
T ss_pred HHHHHHh-------CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhhc----------------
Confidence 3466666 789998877655444 5566688999999888766655443221110000
Q ss_pred CCCCCCCCCCCccccchhhhHHHHHHHHHHhccCc-cEEEEcChhHhhHHHHHHHHhhCCCC-ccccCcCccCCCCCcCC
Q 012543 179 ELPPLRMKDIPVIETLYQETLHQFAAEAINQMKAS-SGCIWNSVQELEQDSLAKFHREFPIP-SFPIGPFHKYYPASASS 256 (461)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~-~~~vG~~~~~~~~~~~~ 256 (461)
++. ..-.-..++++..+.....+. +.+.+|+...- ..+.-+.+ .+ ..-|=|.|...
T Consensus 199 ~~l-----------~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~--nHI~qiW~---~~~~~iVyPPC~~e------ 256 (465)
T KOG1387|consen 199 GIL-----------VWGKLAYWRLFALLYQSAGSKADIVMTNSSWTN--NHIKQIWQ---SNTCSIVYPPCSTE------ 256 (465)
T ss_pred chh-----------hhHHHHHHHHHHHHHHhccccceEEEecchhhH--HHHHHHhh---ccceeEEcCCCCHH------
Confidence 000 011223466666666666444 45567776433 22222233 22 23333332111
Q ss_pred CccCcchhhhhcCCCCCCeEEEEEccccccCC-HHHHHH--HHHHHHh---C--CCceEEEECCCccC-CchhcccCchh
Q 012543 257 LLSQDRICISRLDKQAPKSVIYVSFGSIAAID-ETKFLE--VAWGLAN---S--KVPFLWVVRPGLVR-GAEWIELLPRG 327 (461)
Q Consensus 257 ~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~--~~~a~~~---~--~~~~i~~~~~~~~~-~~~~~~~lp~~ 327 (461)
++.+--.....+-...+++|..-... ...++. +....+. . +.+.+++ ++..-. ..+..+.|-+-
T Consensus 257 ------~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~iv-GScRneeD~ervk~Lkd~ 329 (465)
T KOG1387|consen 257 ------DLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIV-GSCRNEEDEERVKSLKDL 329 (465)
T ss_pred ------HHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEE-eccCChhhHHHHHHHHHH
Confidence 13332222334556777777655411 111222 2221111 1 2233333 332111 11111222211
Q ss_pred HHH-HhcCCCceeeecChhh---hhcCCCCCcccc-----ccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhce
Q 012543 328 FLE-MLDGRGHIVKWAPQQE---VLAHPATGAFWT-----HCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVG 398 (461)
Q Consensus 328 ~~~-~~~~~~~~~~~vp~~~---lL~~~~~~~~I~-----HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G 398 (461)
-++ +.++++.+..-+|+.+ +|..+.. -|| |=|. ++.|.|++|.=.|+---.+-..+. |... .|
T Consensus 330 a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gvh~MwNEHFGI-sVVEyMAAGlIpi~h~SgGP~lDI---V~~~--~G 401 (465)
T KOG1387|consen 330 AEELKIPKHVQFEKNVPYEKLVELLGKATI--GVHTMWNEHFGI-SVVEYMAAGLIPIVHNSGGPLLDI---VTPW--DG 401 (465)
T ss_pred HHhcCCccceEEEecCCHHHHHHHhcccee--ehhhhhhhhcch-hHHHHHhcCceEEEeCCCCCceee---eecc--CC
Confidence 111 2346667888899877 4445544 222 3344 788999998644432211111111 1110 12
Q ss_pred eecCC-ccCHHHHHHHHHHHhcc-hh-HHHHHHHHHHHHHHHH
Q 012543 399 LHLER-KLERGEVERAIRRVMVD-AE-GREMRNRAAILKEKLD 438 (461)
Q Consensus 399 ~~l~~-~~~~~~l~~~i~~ll~~-~~-~~~~~~~a~~l~~~~~ 438 (461)
.-... ..|.++-.++|.+++.. .+ ...+|++|++=-+++.
T Consensus 402 ~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFs 444 (465)
T KOG1387|consen 402 ETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFG 444 (465)
T ss_pred ccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 11111 35777888888888764 22 3457777776666665
No 249
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=48.88 E-value=27 Score=29.97 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=26.3
Q ss_pred HHHHHhhcccccCCCCccEEEeCCCchh--hHHHHHHcCCCeEEEe
Q 012543 100 CLAKLLSNAEEKEEEPIACLITDASWFF--THDVAESLKLPRIVLR 143 (461)
Q Consensus 100 ~~~~l~~~~~~~~~~~pDlvi~D~~~~~--a~~~A~~lgiP~v~~~ 143 (461)
.+|+++. .+||+||....... ....-+..|||++.+.
T Consensus 61 n~E~ll~-------l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 61 NVELIVA-------LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CHHHHhc-------cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 5677777 78999998754422 3344578999998874
No 250
>PRK08760 replicative DNA helicase; Provisional
Probab=48.55 E-value=44 Score=33.87 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=31.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYS-KGFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~-rGh~V~~~~~~~~ 53 (461)
=+++...|+.|-..-++.+|...+. .|+.|.|++.+..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 4566777899999999999998875 5999999988743
No 251
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=48.08 E-value=27 Score=33.01 Aligned_cols=38 Identities=18% Similarity=0.031 Sum_probs=31.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
.|+|..-|+-|-..-..++|..++++|++|.+++++..
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 34445558999999999999999999999999999744
No 252
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=47.92 E-value=15 Score=30.89 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=24.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
||.++..|..| .++|..|.++||+|++.+..
T Consensus 1 KI~ViGaG~~G-----~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWG-----TALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHH-----HHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHH-----HHHHHHHHHcCCEEEEEecc
Confidence 45666655555 48999999999999999885
No 253
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=47.68 E-value=18 Score=30.51 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=34.1
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEEcC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN-SPNPSNYPHFTFCSIQ 69 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~ 69 (461)
+.++|.++-+|++||. -|..|++.|++|++...+.. .....+..||+..++.
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 3579999999999985 57899999999999877533 1122233677766554
No 254
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=47.44 E-value=90 Score=31.14 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILY-SKGFSITIIHTKF 52 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~-~rGh~V~~~~~~~ 52 (461)
+..++++..++.|-.--...||..|. ++|++|.++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 44667788889999999999999997 5799999998863
No 255
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=47.19 E-value=28 Score=30.18 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=30.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYS-KGFSITIIHTKF 52 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~-rGh~V~~~~~~~ 52 (461)
||++.-.|+.| .+-...+.++|.+ .||+|.++.++.
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 78887777777 6679999999999 599999999963
No 256
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.13 E-value=25 Score=33.25 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=39.1
Q ss_pred hhcCCCCCccccccCchHHHHHhhc----CCccccCcccchhhhhHHHHHHhhhceeecCC--ccCHHHHHHHHHHHhcc
Q 012543 347 VLAHPATGAFWTHCGWNSTLESMCE----GVPMICQPCHGEQMVIARYVSDVWKVGLHLER--KLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~--~~~~~~l~~~i~~ll~~ 420 (461)
+...+|+ +|+=||=||+..+... ++|++.+-+ | .+.. ..+.+++.+++.+++++
T Consensus 65 ~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~-----------------G-~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 65 FDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT-----------------G-HLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC-----------------C-CCcccccCCHHHHHHHHHHHHcC
Confidence 3345677 9999999999999774 788877732 2 1212 46778888888888876
No 257
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=46.89 E-value=56 Score=27.67 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEE
Q 012543 27 HINPMLQLANILYS-KGFSITII 48 (461)
Q Consensus 27 Hi~p~l~La~~L~~-rGh~V~~~ 48 (461)
|.....+|+++|.+ +|.++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 78889999999988 45544443
No 258
>PRK11914 diacylglycerol kinase; Reviewed
Probab=46.64 E-value=52 Score=31.05 Aligned_cols=81 Identities=9% Similarity=-0.016 Sum_probs=47.8
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCc
Q 012543 276 VIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGA 355 (461)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~ 355 (461)
.++++.-|-.....+.+..+.+.++..+..+.+...... ....+ .. .+......++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-----------~~~~~------~a-----~~~~~~~~d~-- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-----------HDARH------LV-----AAALAKGTDA-- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-----------HHHHH------HH-----HHHHhcCCCE--
Confidence 444554443333345677788888888777544443321 11110 00 0112233466
Q ss_pred cccccCchHHHHHhh----cCCccccCcc
Q 012543 356 FWTHCGWNSTLESMC----EGVPMICQPC 380 (461)
Q Consensus 356 ~I~HGG~gs~~eal~----~GvP~l~~P~ 380 (461)
+|--||=||+.|++. .++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 999999999999973 4799999996
No 259
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.57 E-value=26 Score=32.92 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=38.9
Q ss_pred hhcCCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 347 VLAHPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
+...+++ +|+=||=||+..++. .++|++.+-.. .+|- +. .++++++.+++.+++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGF-l~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGF-LT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCc-cc-ccCHHHHHHHHHHHHcC
Confidence 3345677 999999999999975 36787666321 0121 11 46688888889888876
No 260
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=46.28 E-value=1.1e+02 Score=26.27 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.2
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSK 41 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~r 41 (461)
.+++++ .|+.||..=|+.|-+.|.++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 355554 48999999999999999776
No 261
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=46.13 E-value=97 Score=31.19 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=29.0
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+|++... .+.|-..-...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 5666544 5678999999999999999999998755
No 262
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=46.11 E-value=2.6e+02 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.0
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEEE
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIVL 142 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~~ 142 (461)
.+||++|.+.. ...+|+++|||++..
T Consensus 355 ~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 67999999943 457889999999864
No 263
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.99 E-value=70 Score=30.08 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=39.1
Q ss_pred cCCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 349 AHPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
..+++ +|+=||-||+.+++. .++|++.+... .+| -+. ..+.+++.++|.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lG-Fl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLG-FLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccc-ccc-cCCHHHHHHHHHHHHcC
Confidence 34677 999999999999975 37788777541 122 121 46788899999998876
No 264
>PRK06904 replicative DNA helicase; Validated
Probab=45.66 E-value=72 Score=32.30 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=31.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYS-KGFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~-rGh~V~~~~~~~~ 53 (461)
=+++...|+.|-..-++.+|...+. .|+.|.|++.+..
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3455777899999999999998875 5999999998744
No 265
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=45.65 E-value=2.1e+02 Score=28.79 Aligned_cols=26 Identities=19% Similarity=0.010 Sum_probs=20.9
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEEE
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIVL 142 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~~ 142 (461)
.+||++|.. .....+|.++|||++.+
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 679999986 23467888999999885
No 266
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=44.77 E-value=24 Score=37.60 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=36.4
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+-++||.|-..|+-|-.+.|+.=|++|.+.|.+|.+-.-+
T Consensus 20 RGklkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vE 59 (890)
T COG2205 20 RGKLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVE 59 (890)
T ss_pred CCceEEEeecCCCccHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 4578999999999999999999999999999999986654
No 267
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.74 E-value=1e+02 Score=30.45 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNS 54 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~ 54 (461)
++-.|+++..=+.|-.--+-.||+.|+.+|+.|.+++.+-..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 445678888889999999999999999999999999986433
No 268
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=44.43 E-value=3.6e+02 Score=27.47 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=66.1
Q ss_pred ceeeecChhh---hhcCCCCCcccc---ccCchHH-HHHhhcCC----ccccCcccchhhhhHHHHHHhhhceeecCCcc
Q 012543 337 HIVKWAPQQE---VLAHPATGAFWT---HCGWNST-LESMCEGV----PMICQPCHGEQMVIARYVSDVWKVGLHLERKL 405 (461)
Q Consensus 337 ~~~~~vp~~~---lL~~~~~~~~I~---HGG~gs~-~eal~~Gv----P~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 405 (461)
.+.+.+|+.+ ++..+|+ ++. .-|+|-+ .|.++++. |+|.--+.+ ..+. |.-++.+++ .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-------aa~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-------AAVE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-------chhh-cCCCEEECC-C
Confidence 3447778766 5667777 443 4588854 59999877 444332221 1133 555666766 7
Q ss_pred CHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 406 ERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
+.+++.++|.+.|+.+. .+=+++.+++.+.++ ......=.+.+++.|+
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVS 481 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 99999999999999732 223455555555554 3456666677776664
No 269
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=44.28 E-value=3.6e+02 Score=27.45 Aligned_cols=170 Identities=15% Similarity=0.129 Sum_probs=93.3
Q ss_pred CeEEEEEcccccc-CCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecCh---hhhhc
Q 012543 274 KSVIYVSFGSIAA-IDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQ---QEVLA 349 (461)
Q Consensus 274 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~---~~lL~ 349 (461)
+..++..-|..+. ...+.....+.-+-+.+.++++.-.++. . ++.--.+..++.++++.+.-|.+. ..++.
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~-~----le~~~~~la~~~~~~~~~~i~~~~~la~~i~a 367 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDP-E----LEEALRALASRHPGRVLVVIGYDEPLAHLIYA 367 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcH-H----HHHHHHHHHHhcCceEEEEeeecHHHHHHHHh
Confidence 4455555555554 3345555555444444566655544421 0 111111222233455555544443 33666
Q ss_pred CCCCCcccc-----ccCchHHHHHhhcCCccccCcccc--hh----hhhHHHHHHhhhceeecCCccCHHHHHHHHHHHh
Q 012543 350 HPATGAFWT-----HCGWNSTLESMCEGVPMICQPCHG--EQ----MVIARYVSDVWKVGLHLERKLERGEVERAIRRVM 418 (461)
Q Consensus 350 ~~~~~~~I~-----HGG~gs~~eal~~GvP~l~~P~~~--DQ----~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll 418 (461)
-+|+ ++- -||. |=++||++|.+-|+.++.+ |- -.++ .... |.|..... .+++++..++++.+
T Consensus 368 gaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~-~~~~~l~~al~rA~ 440 (487)
T COG0297 368 GADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ-TNPDHLANALRRAL 440 (487)
T ss_pred cCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec-CCHHHHHHHHHHHH
Confidence 7776 443 2455 5678999999888888753 32 2222 4453 77877776 59999999999887
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 419 VDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 419 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
. -|+..-..++...+.+....-+-++...+-++..++
T Consensus 441 ~-----~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~ 477 (487)
T COG0297 441 V-----LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKP 477 (487)
T ss_pred H-----HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHH
Confidence 4 344433334444444444455566666666655443
No 270
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.25 E-value=26 Score=32.90 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=39.5
Q ss_pred hhhcCCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 346 EVLAHPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 346 ~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
++...+|+ +|+=||=||+..+.. .++|++.+-.. .+|-.. ..+.+++.+++.+++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT--QIPREYMTDKLLPVLEG 124 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee--ccCHHHHHHHHHHHHcC
Confidence 33345777 999999999999975 37888777321 112111 46778888888888876
No 271
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=44.23 E-value=1.7e+02 Score=24.07 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 17 LILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.+...++.|-...+..++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 56777889999999999999999999999988765
No 272
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=44.12 E-value=48 Score=32.10 Aligned_cols=97 Identities=10% Similarity=0.162 Sum_probs=52.9
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCch-hHHH-Hh-----cCCCce--------
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPR-GFLE-ML-----DGRGHI-------- 338 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~-~~~~-~~-----~~~~~~-------- 338 (461)
+++++.+-||-++..+. .++++.+++.+++++|+........ +.+|. ++.- .. .....+
T Consensus 2 ~~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~----~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK----TIIEKENIPYYSISSGKLRRYFDLKNIKDPFL 75 (352)
T ss_pred CeEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc----ccCcccCCcEEEEeccCcCCCchHHHHHHHHH
Confidence 35777777776643222 2355777777889988876553221 11221 1100 00 000000
Q ss_pred --eeecChhhhhc--CCCCCccccccCchH---HHHHhhcCCccccC
Q 012543 339 --VKWAPQQEVLA--HPATGAFWTHCGWNS---TLESMCEGVPMICQ 378 (461)
Q Consensus 339 --~~~vp~~~lL~--~~~~~~~I~HGG~gs---~~eal~~GvP~l~~ 378 (461)
..+.--..++. ++|+ +|++||+-| ...|...|+|+++.
T Consensus 76 ~~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 76 VMKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 00011112344 3566 999999986 88899999999774
No 273
>PRK13604 luxD acyl transferase; Provisional
Probab=44.03 E-value=48 Score=31.30 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIH 49 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~ 49 (461)
++...+++.+|..++-.-+..+|+.|.++|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 4556777788877777779999999999999998754
No 274
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=44.00 E-value=3.4e+02 Score=27.06 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~ 143 (461)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 67999999964 4688999999999864
No 275
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=43.89 E-value=32 Score=29.57 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=27.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
||++.-.|+.| .+-...+.+.|+++|++|.++.++.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChH
Confidence 56666656554 4456699999999999999998863
No 276
>PLN02939 transferase, transferring glycosyl groups
Probab=43.85 E-value=46 Score=36.57 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=31.2
Q ss_pred CCCCeEEEEcC---C---CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 12 KKGRRLILFPL---P---FQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 12 ~~~~~il~~~~---~---~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
+++|||++++. | +.|=-.-.-+|.++|+++||+|.+++|.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 46789999764 2 234444456889999999999999999643
No 277
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=43.53 E-value=65 Score=27.13 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCccccccCch------HHHHHhhcCCccccCcc
Q 012543 353 TGAFWTHCGWN------STLESMCEGVPMICQPC 380 (461)
Q Consensus 353 ~~~~I~HGG~g------s~~eal~~GvP~l~~P~ 380 (461)
.+++++|+|-| .+++|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33477777744 67788999999999964
No 278
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=43.47 E-value=63 Score=21.07 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 427 RNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 427 ~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
-+.++++.++|. +|=|+..+|....+.|++
T Consensus 14 Q~AvE~Iq~LMa----qGmSsgEAI~~VA~~iRe 43 (51)
T PF03701_consen 14 QQAVERIQELMA----QGMSSGEAIAIVAQEIRE 43 (51)
T ss_pred HHHHHHHHHHHH----hcccHHHHHHHHHHHHHH
Confidence 455666666666 666777777776666653
No 279
>PRK09165 replicative DNA helicase; Provisional
Probab=43.44 E-value=60 Score=33.12 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=29.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCCC
Q 012543 17 LILFPLPFQGHINPMLQLANILYSK---------------GFSITIIHTKFN 53 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~r---------------Gh~V~~~~~~~~ 53 (461)
+++...|+.|-..-++.+|...+.+ |..|.|++.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs 271 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS 271 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence 5667778999999999999888653 789999988743
No 280
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=43.38 E-value=16 Score=33.96 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEEcCCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPN-PSNYPHFTFCSIQDG 71 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (461)
+.++|+++.+|+|||.. |..|++.|.+|.+...+...+. .....||+...+.+-
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea 71 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEA 71 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHH
Confidence 45799999999999976 5678899999999887633322 233468887777543
No 281
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.17 E-value=1e+02 Score=30.00 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=34.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++.-|+|+..-+.|-.--+-.+|..++++|+.+.+++.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaD 138 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCAD 138 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeec
Confidence 345667788789999999999999999999999999986
No 282
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.11 E-value=50 Score=26.81 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
++.||++.+.++.+|-.-.--++..|...|++|.....
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~ 38 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPL 38 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCC
Confidence 35799999999999999999999999999999998766
No 283
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=43.05 E-value=48 Score=28.48 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+...++++..++.|-..-..++++++..+|+.|.|+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 345788888889999999999999999999999998763
No 284
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=42.99 E-value=28 Score=30.83 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=22.9
Q ss_pred CCccEEEeCCCchh-------hHHHHHHcCCCeEEEec
Q 012543 114 EPIACLITDASWFF-------THDVAESLKLPRIVLRS 144 (461)
Q Consensus 114 ~~pDlvi~D~~~~~-------a~~~A~~lgiP~v~~~~ 144 (461)
..||+|+.|..... |..+...+++|+|.++=
T Consensus 92 ~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK 129 (208)
T cd06559 92 TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAK 129 (208)
T ss_pred CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEc
Confidence 56999999976532 45566777899999863
No 285
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=42.83 E-value=49 Score=28.64 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=36.7
Q ss_pred eEEEEcC---C-CccCHHHHH-HHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCceEEEcC
Q 012543 16 RLILFPL---P-FQGHINPML-QLANILYSKGFSITIIHTKFNSP-NPSNYPHFTFCSIQ 69 (461)
Q Consensus 16 ~il~~~~---~-~~GHi~p~l-~La~~L~~rGh~V~~~~~~~~~~-~~~~~~~~~~~~~~ 69 (461)
||.++.. | -+|=+--++ .|+..|+++||+|++.+...... ......|++...++
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 6766543 3 356666555 67888889999999998864332 23345678888776
No 286
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=42.47 E-value=1.5e+02 Score=23.48 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=37.6
Q ss_pred hhhhcCCCCCCeEEEEEccccccC-CHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhH
Q 012543 264 CISRLDKQAPKSVIYVSFGSIAAI-DETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGF 328 (461)
Q Consensus 264 l~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 328 (461)
..+|+.. +-+++|.|-.... +...+..+++.+.+.+.-.+.+..+.. ...+|+.+
T Consensus 36 ~~~~l~~----gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~------~~~iP~~~ 91 (123)
T PF07905_consen 36 PSDWLRG----GELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY------LDEIPEEI 91 (123)
T ss_pred HHHhCCC----CeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc------cccCCHHH
Confidence 5678754 3488888877765 566688888889888877665544432 45577765
No 287
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.34 E-value=28 Score=30.02 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=27.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
||++.-.|+.|-+.- ..+.+.|+++|++|.++.++.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECcc
Confidence 355555566665554 889999999999999999863
No 288
>PRK13057 putative lipid kinase; Reviewed
Probab=42.28 E-value=57 Score=30.45 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=25.1
Q ss_pred hcCCCCCccccccCchHHHHHhh----cCCccccCcc
Q 012543 348 LAHPATGAFWTHCGWNSTLESMC----EGVPMICQPC 380 (461)
Q Consensus 348 L~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~ 380 (461)
....++ +|--||=||+.|++. .++|+-++|.
T Consensus 48 ~~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 48 ADGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred HcCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 345566 999999999999863 5789999995
No 289
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.27 E-value=2.1e+02 Score=24.04 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012543 424 REMRNRAAILKEKLDLC 440 (461)
Q Consensus 424 ~~~~~~a~~l~~~~~~~ 440 (461)
+.++++.+..++++.+.
T Consensus 131 ~~l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 131 PELAEKLKEYRENQKEE 147 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777776666643
No 290
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=41.94 E-value=2.3e+02 Score=24.45 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=30.5
Q ss_pred cCCccccCccc----chh---hhhHHHHHHhhhceeecCC-------------ccCHHHHHHHHHHHhc
Q 012543 371 EGVPMICQPCH----GEQ---MVIARYVSDVWKVGLHLER-------------KLERGEVERAIRRVMV 419 (461)
Q Consensus 371 ~GvP~l~~P~~----~DQ---~~na~~v~~~lG~G~~l~~-------------~~~~~~l~~~i~~ll~ 419 (461)
.++|++++|-. .+. ..|..++++ +|+=+.-.. -.+.++|.+.+.+.++
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 39999999952 222 456777777 576544322 2466777777776654
No 291
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=41.77 E-value=1e+02 Score=26.36 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=45.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC-CC-----CCCCCCCceEEEcCCCCCCCcCCcccHHHHHHH
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN-SP-----NPSNYPHFTFCSIQDGLSETEASTTDFVALISV 88 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (461)
-.|.+++..+.|-....+.+|-+-.-+|.+|.++---.. .. .....+++++.....++.... .+....
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~---~~~~~~--- 77 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRM---NEEEED--- 77 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----G---GGHHHH---
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccC---CCcHHH---
Confidence 467788888999888777776666666777777654211 10 112235678877765443221 111111
Q ss_pred HHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCch
Q 012543 89 LHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWF 126 (461)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~ 126 (461)
...+...+....+.+.. .++|+||.|....
T Consensus 78 -~~~~~~~~~~a~~~i~~-------~~~dlvILDEi~~ 107 (172)
T PF02572_consen 78 -RAAAREGLEEAKEAISS-------GEYDLVILDEINY 107 (172)
T ss_dssp -HHHHHHHHHHHHHHTT--------TT-SEEEEETHHH
T ss_pred -HHHHHHHHHHHHHHHhC-------CCCCEEEEcchHH
Confidence 23333333333333332 6799999997653
No 292
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=41.66 E-value=2.1e+02 Score=29.07 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.0
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEE
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIV 141 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~ 141 (461)
.+||++|.+ .....+|+++|||++-
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 679999997 3466889999999984
No 293
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=41.65 E-value=2.1e+02 Score=25.06 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=72.8
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhc-CCCceeeecChhhhhcCC
Q 012543 273 PKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLD-GRGHIVKWAPQQEVLAHP 351 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~vp~~~lL~~~ 351 (461)
+++++.|..|.++ ...++.|...+..+.++ ... +.+.+.+..+ +++..........-+..+
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC----------CCHHHHHHHhCCCEEEEecCCChhhcCCc
Confidence 5778888877544 33445555566665444 332 1122221111 222333333345567778
Q ss_pred CCCccccccCchHHHHHhh----cCCccccCcccchhhhh-----HHHHHHhhhceeecCC----ccCHHHHHHHHHHHh
Q 012543 352 ATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVI-----ARYVSDVWKVGLHLER----KLERGEVERAIRRVM 418 (461)
Q Consensus 352 ~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~n-----a~~v~~~lG~G~~l~~----~~~~~~l~~~i~~ll 418 (461)
++ +|.--+...+.+.++ .++++-+ .|.+.. -..+.+. ++-+.+++ ..-+..|++.|..++
T Consensus 72 dl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~ 144 (202)
T PRK06718 72 FL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALY 144 (202)
T ss_pred eE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHc
Confidence 87 888777666666655 4554433 233222 2223332 33333333 233456777777766
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh
Q 012543 419 VDAEGREMRNRAAILKEKLDLCT 441 (461)
Q Consensus 419 ~~~~~~~~~~~a~~l~~~~~~~~ 441 (461)
.. +...+-+.+.++++.+++.+
T Consensus 145 ~~-~~~~~~~~~~~~R~~~k~~~ 166 (202)
T PRK06718 145 DE-SYESYIDFLYECRQKIKELQ 166 (202)
T ss_pred ch-hHHHHHHHHHHHHHHHHHhC
Confidence 32 22456667777777776533
No 294
>PRK11519 tyrosine kinase; Provisional
Probab=41.49 E-value=4.7e+02 Score=28.23 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=30.6
Q ss_pred CCeEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPL--PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~--~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.++++++. |+-|-..-...||..|+..|++|.++-.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 345555544 68888889999999999999999998665
No 295
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=41.32 E-value=75 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=34.6
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTKFNSPN 56 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~ 56 (461)
-|.|+.. ||.|-.--.+.||.+|+++|-.|+++=.+.+.+.
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 4555555 8999999999999999999999999988766554
No 296
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=41.00 E-value=41 Score=27.70 Aligned_cols=57 Identities=9% Similarity=0.005 Sum_probs=45.5
Q ss_pred cCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHh
Q 012543 360 CGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLER-KLERGEVERAIRRVM 418 (461)
Q Consensus 360 GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll 418 (461)
|+=-||.|-+----|+|+=.-..-+++|...+.+ |+-....+ .++.++|..++..+-
T Consensus 35 ~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie 92 (156)
T COG1327 35 GERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIE 92 (156)
T ss_pred ccccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3344777877777777777778889999999886 78777777 899999999988775
No 297
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=40.51 E-value=2.2e+02 Score=23.78 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=73.5
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCc
Q 012543 276 VIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGA 355 (461)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~ 355 (461)
.|-|-+||.+ +-+..+..++.|+.++..+-..+-+-+ ..|+.+.+.. .-....++++
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH--------RTPe~m~~ya-------------~~a~~~g~~v 60 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH--------RTPEKMFEYA-------------EEAEERGVKV 60 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc--------CCHHHHHHHH-------------HHHHHCCCeE
Confidence 4667788866 445667777888888766533332221 1444432211 1112234444
Q ss_pred cccccCchHH---HHHhhcCCccccCcccch---hhhhHHHHHHhhhceeecCC-----ccCHHHHHHHHHHHhcchhHH
Q 012543 356 FWTHCGWNST---LESMCEGVPMICQPCHGE---QMVIARYVSDVWKVGLHLER-----KLERGEVERAIRRVMVDAEGR 424 (461)
Q Consensus 356 ~I~HGG~gs~---~eal~~GvP~l~~P~~~D---Q~~na~~v~~~lG~G~~l~~-----~~~~~~l~~~i~~ll~~~~~~ 424 (461)
+|.-.|.-.= +-|-..=+|+|.+|.... -.+--..+.+ +--|+-+.+ ..++.-+...|-. +.| +
T Consensus 61 iIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa-~~d---~ 135 (162)
T COG0041 61 IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILA-IKD---P 135 (162)
T ss_pred EEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHc-CCC---H
Confidence 6655442110 112334789999998642 2233344555 555654433 2233333333322 235 7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012543 425 EMRNRAAILKEKLDLCTK 442 (461)
Q Consensus 425 ~~~~~a~~l~~~~~~~~~ 442 (461)
.++++.+++++.+++.+.
T Consensus 136 ~l~~kl~~~r~~~~~~V~ 153 (162)
T COG0041 136 ELAEKLAEFREAQTEEVL 153 (162)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999886553
No 298
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.40 E-value=32 Score=32.51 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=39.6
Q ss_pred hhcCCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 347 VLAHPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
+...+|+ +|+=||-||++.+.. .++|++.+.+. .+|-.. ...++++.+++.+++++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 3345777 999999999999876 48888877531 122111 46678888888888876
No 299
>PRK04148 hypothetical protein; Provisional
Probab=40.17 E-value=59 Score=26.49 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.++++.+..| .| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 45789888888 44 24678888999999987653
No 300
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=39.95 E-value=31 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=22.6
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 24 FQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 24 ~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
..-.+.-.+=++..|+++||+|++++++
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCH
Confidence 4455666788899999999999999986
No 301
>PLN02929 NADH kinase
Probab=39.80 E-value=26 Score=32.91 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=43.5
Q ss_pred cCCCCCccccccCchHHHHHhh---cCCccccCcccc------hhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhc
Q 012543 349 AHPATGAFWTHCGWNSTLESMC---EGVPMICQPCHG------EQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMV 419 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~ 419 (461)
..+|+ +|+-||=||+..|.. .++|++.+-... ++..|.....+ -+|-.- ..+.+++.+.+.++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r--~lGfL~--~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR--STGHLC--AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc--Cccccc--cCCHHHHHHHHHHHHc
Confidence 45577 999999999999855 478988875542 12223321111 233222 4678999999999998
Q ss_pred c
Q 012543 420 D 420 (461)
Q Consensus 420 ~ 420 (461)
+
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 7
No 302
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.76 E-value=25 Score=32.59 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=38.2
Q ss_pred hhhhcCCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhc
Q 012543 345 QEVLAHPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMV 419 (461)
Q Consensus 345 ~~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~ 419 (461)
..+...+|+ +|+=||-||+..+.+ .++|++.+-.. .+|-.. ..+++++.+.+.++++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT--DIDPKNAYEQLEACLE 97 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc--cCCHHHHHHHHHHHHh
Confidence 444456777 999999999998865 36888776321 122111 4567777777777777
No 303
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.63 E-value=88 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=21.2
Q ss_pred CCCCCccccccCchHHHHHhhc-----CCcccc-Ccc
Q 012543 350 HPATGAFWTHCGWNSTLESMCE-----GVPMIC-QPC 380 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~~-----GvP~l~-~P~ 380 (461)
.+++ +|.-||=||+.|++.. ..|.++ +|.
T Consensus 57 ~~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 57 GVDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3566 9999999999997643 345554 885
No 304
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=39.58 E-value=63 Score=27.83 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCccEEEeCC--CchhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDA--SWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~--~~~~a~~~A~~lgiP~v~~~ 143 (461)
.++|.|++=. ....|..+|..+|+|+|.+.
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 5699999764 44678999999999999973
No 305
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=39.43 E-value=39 Score=29.17 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCC--CCCCCc---CCcccHHHHHHHHHHHcchhHHHHHHH
Q 012543 29 NPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQD--GLSETE---ASTTDFVALISVLHVKCAAPFQDCLAK 103 (461)
Q Consensus 29 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (461)
.-++.+|+.|.+.|+++. ++.. ....+ +..|+.+..+.+ ++|+.. ..+..+.-....+.+. ...+.. +
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~G-TAk~L-~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~---~~~~~~-~ 83 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STGG-TAKFL-KEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARR---DNEEHK-D 83 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-EccH-HHHHH-HHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCC---CChhHH-H
Confidence 457899999999999995 3432 22221 224677776653 555443 2222332222222211 111222 3
Q ss_pred HhhcccccCCCCccEEEeCCC
Q 012543 104 LLSNAEEKEEEPIACLITDAS 124 (461)
Q Consensus 104 l~~~~~~~~~~~pDlvi~D~~ 124 (461)
+.+..- ...|+||++..
T Consensus 84 ~~~~~i----~~idlVvvNlY 100 (187)
T cd01421 84 LEEHGI----EPIDLVVVNLY 100 (187)
T ss_pred HHHcCC----CCeeEEEEccc
Confidence 333222 67999999943
No 306
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=39.34 E-value=1.1e+02 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=24.6
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012543 21 PLPFQGHINPMLQLANILYSKGFSITII 48 (461)
Q Consensus 21 ~~~~~GHi~p~l~La~~L~~rGh~V~~~ 48 (461)
+.++.|-..-.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3467788899999999999999999986
No 307
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=39.09 E-value=42 Score=31.81 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|+|+++..|+.|= .+|..|.+.||+|+++...
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeC
Confidence 57999998887773 4678899999999999874
No 308
>PRK05114 hypothetical protein; Provisional
Probab=38.94 E-value=79 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 427 RNRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 427 ~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
.+.++++.++|. +|=|+-.+|....+.|+
T Consensus 14 Q~AVErIq~LMa----qGmSsgEAI~~VA~eiR 42 (59)
T PRK05114 14 QKAVERIQELMA----QGMSSGEAIALVAEELR 42 (59)
T ss_pred HHHHHHHHHHHH----ccccHHHHHHHHHHHHH
Confidence 455566666665 56666666666655554
No 309
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=38.58 E-value=1.2e+02 Score=30.16 Aligned_cols=34 Identities=9% Similarity=-0.045 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.||||++..|+.-| +|+++|++.++-..+++.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 458999999888776 7899999988654544443
No 310
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=38.40 E-value=1.6e+02 Score=24.30 Aligned_cols=26 Identities=8% Similarity=0.196 Sum_probs=20.6
Q ss_pred ccccccCch------HHHHHhhcCCccccCcc
Q 012543 355 AFWTHCGWN------STLESMCEGVPMICQPC 380 (461)
Q Consensus 355 ~~I~HGG~g------s~~eal~~GvP~l~~P~ 380 (461)
+++.|+|-| .+.+|...++|+|++..
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 388886644 67888889999999964
No 311
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=37.76 E-value=2e+02 Score=28.98 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=27.5
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 17 LILF-PLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 17 il~~-~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
|++. |..+.|-..-...|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 4444 445678899999999999999999998754
No 312
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=37.73 E-value=2.8e+02 Score=24.25 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=79.6
Q ss_pred eEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCC
Q 012543 275 SVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATG 354 (461)
Q Consensus 275 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~ 354 (461)
|+.++....... ...+=..+.+.+...+..+|+..+. ..-|.+.+.++.++++. + -|+++
T Consensus 52 pt~~~~~k~~~~-r~~~d~~l~~~l~~~~~dlvvLAGy--------MrIL~~~fl~~~~grIl--N--------IHPSL- 111 (200)
T COG0299 52 PTVVLDRKEFPS-REAFDRALVEALDEYGPDLVVLAGY--------MRILGPEFLSRFEGRIL--N--------IHPSL- 111 (200)
T ss_pred CEEEeccccCCC-HHHHHHHHHHHHHhcCCCEEEEcch--------HHHcCHHHHHHhhcceE--e--------cCccc-
Confidence 334444433331 3344556889999988886655544 34466666555554332 1 37888
Q ss_pred ccccccCchHHHHHhhcCCccccCcccc--hhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcchhHHHHHHHHHH
Q 012543 355 AFWTHCGWNSTLESMCEGVPMICQPCHG--EQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVDAEGREMRNRAAI 432 (461)
Q Consensus 355 ~~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 432 (461)
.=.++|..+..+|+.+|+..-++-.+. +..+-+-.+.+. -+ -+...-|.|.|.+.|.+.-. .-|-+..+.
T Consensus 112 -LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~-~V--pv~~~Dt~etl~~RV~~~Eh----~lyp~~v~~ 183 (200)
T COG0299 112 -LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQA-AV--PVLPGDTAETLEARVLEQEH----RLYPLAVKL 183 (200)
T ss_pred -ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEE-ee--eecCCCCHHHHHHHHHHHHH----HHHHHHHHH
Confidence 888999999999999999987666542 334444433331 12 22223488888888876332 345555555
Q ss_pred HHH
Q 012543 433 LKE 435 (461)
Q Consensus 433 l~~ 435 (461)
+.+
T Consensus 184 ~~~ 186 (200)
T COG0299 184 LAE 186 (200)
T ss_pred HHh
Confidence 544
No 313
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=37.59 E-value=1.2e+02 Score=20.13 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012543 406 ERGEVERAIRRVMVDAE--GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISY 457 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 457 (461)
|.++|..+|+++|.+.+ .-+.|+=-+++.+++.- +-......+++++..
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~---dL~~~K~~I~~~I~~ 51 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERFGV---DLSSRKKFIKELIDE 51 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS-----SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHH
Confidence 46788999999988644 23456666666666643 334566666666654
No 314
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=37.51 E-value=1.1e+02 Score=29.36 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=31.2
Q ss_pred CCeEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLP--FQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~--~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++||.+++.| +.|==+-..++.+.+...|.+|.-+-..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~G 41 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNG 41 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 4699999987 4577777889999999999999987664
No 315
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=37.34 E-value=51 Score=27.66 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.++|+++..|.-| ...++.|.+.|++|+++.++
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45688888766444 67899999999999999654
No 316
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=37.23 E-value=2.4e+02 Score=27.15 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGF-SITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh-~V~~~~~~ 51 (461)
++.+|+++..|+.| -.+|+.|+..|. +++++-.+
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 56799999998777 567899999998 78876663
No 317
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.13 E-value=43 Score=31.05 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCCCCccccccCchHHHHHhh-cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 350 HPATGAFWTHCGWNSTLESMC-EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+|+ +|+=||-||+..+.. ..+|++.+-.. .+|- +. ..+.+++.+++.+++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGF-L~-~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGF-LT-EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCcc-Cc-ccCHHHHHHHHHHHHcC
Confidence 5677 999999999999987 35576555210 1121 11 56788888899988886
No 318
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.75 E-value=62 Score=30.95 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=21.3
Q ss_pred CCccEEEeCCCchh-------h---HHHHHHcCCCeEE
Q 012543 114 EPIACLITDASWFF-------T---HDVAESLKLPRIV 141 (461)
Q Consensus 114 ~~pDlvi~D~~~~~-------a---~~~A~~lgiP~v~ 141 (461)
.+||++|+-+.+-. + ..+.++++||.|.
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 78999999986632 2 2256789999987
No 319
>PRK07773 replicative DNA helicase; Validated
Probab=36.27 E-value=95 Score=34.38 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=31.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSK-GFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~r-Gh~V~~~~~~~~ 53 (461)
=+++...|+.|-..-++.+|...+.+ |..|.|++-+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms 257 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35667778999999999999998754 889999998743
No 320
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.23 E-value=76 Score=30.03 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=24.1
Q ss_pred CCCCCccccccCchHHHHHhhc----CCccccCcc
Q 012543 350 HPATGAFWTHCGWNSTLESMCE----GVPMICQPC 380 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~ 380 (461)
.+++ +|.-||-||+.+++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4666 9999999999999864 789888765
No 321
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.16 E-value=80 Score=27.39 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.5
Q ss_pred cEEEeCCCc-hhhHHHHHHcCCCeEEEecc
Q 012543 117 ACLITDASW-FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 117 Dlvi~D~~~-~~a~~~A~~lgiP~v~~~~~ 145 (461)
.++|..++. +.|..+|+.+++|.|.+.|+
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 466666654 78889999999999998777
No 322
>PRK05636 replicative DNA helicase; Provisional
Probab=36.10 E-value=62 Score=33.08 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=29.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCC
Q 012543 17 LILFPLPFQGHINPMLQLANILY-SKGFSITIIHTKFN 53 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~-~rGh~V~~~~~~~~ 53 (461)
+++...|+.|-..-.+.+|...+ +.|..|.|++.+..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 45677789999999999998876 45899999988743
No 323
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=35.89 E-value=88 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=32.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
||++..-|+.|-......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888753
No 324
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=35.86 E-value=36 Score=30.52 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 27 HINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 27 Hi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+..|...|++|+++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6788999999999999999998774
No 325
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=35.80 E-value=2.9e+02 Score=28.94 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
..++|+++..+ .-...++++.++.|++|.++....
T Consensus 21 ~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~ 55 (577)
T PLN02948 21 SETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLE 55 (577)
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45688888766 333556667778899999987753
No 326
>PRK04946 hypothetical protein; Provisional
Probab=35.58 E-value=35 Score=29.40 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChh-hhhcCCCCCccccccCchHH
Q 012543 292 FLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQ-EVLAHPATGAFWTHCGWNST 365 (461)
Q Consensus 292 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~-~lL~~~~~~~~I~HGG~gs~ 365 (461)
+..++..+...+.+.+.++.+.. ..-|-. .+..|+.|. .|+.-+++ =-+|||.|.+
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG------~gvLk~----------~V~~wL~q~~~V~af~~A--~~~~GG~GA~ 168 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHG------KHILKQ----------QTPLWLAQHPDVMAFHQA--PKEWGGDAAL 168 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC------HhHHHH----------HHHHHHcCCchhheeecc--CcccCCceEE
Confidence 44455555556777777777653 111111 345788764 48888887 8899999865
No 327
>PRK00784 cobyric acid synthase; Provisional
Probab=35.54 E-value=3e+02 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=28.4
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.|++... ...|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4666544 4679999999999999999999987644
No 328
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=35.53 E-value=31 Score=31.40 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 26 GHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 26 GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
|=-.-+-.|+++|+++||+|+++++.+
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 344456689999999999999999864
No 329
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=35.52 E-value=45 Score=33.66 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=38.2
Q ss_pred cCCCCCccccccCchHHHHHhhc----CCccccCcccchhhhhHHHHHHhhh-ceeecCCccCHHHHHHHHHHHhcc
Q 012543 349 AHPATGAFWTHCGWNSTLESMCE----GVPMICQPCHGEQMVIARYVSDVWK-VGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
..+|+ +|+=||-||++.|... ++|++.+- +| +|= +. .++.+++.++|.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGF-Lt-~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGF-MT-PFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCcce-ec-ccCHHHHHHHHHHHHcC
Confidence 45777 9999999999999773 56776552 12 221 11 46788888899988876
No 330
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.38 E-value=40 Score=31.37 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=35.2
Q ss_pred CCCCCccccccCchHHHHHhh---cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 350 HPATGAFWTHCGWNSTLESMC---EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+++ +|.-||-||+.+++. .++|++.++... + | -+. .+.++++.+++.+++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--G-Fl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--G-FLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--C-ccc-cCCHHHHHHHHHHHHcC
Confidence 4566 999999999999974 456887776421 0 1 111 34567777777777765
No 331
>PRK07206 hypothetical protein; Provisional
Probab=35.29 E-value=1.7e+02 Score=28.87 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=23.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|+++-.... ...++++++++|++++.++..
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 6777765433 346899999999999988874
No 332
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=35.27 E-value=56 Score=29.53 Aligned_cols=36 Identities=6% Similarity=-0.074 Sum_probs=27.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC
Q 012543 17 LILFPLPFQGHINPMLQLANILYSK--GFSITIIHTKF 52 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~~ 52 (461)
|++.-.|+.+=+.-.+.|.+.|+++ ||+|.++.++.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 4444444445557899999999999 99999999863
No 333
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=35.23 E-value=54 Score=29.25 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=28.0
Q ss_pred HHHHHhhcccccCCCCccEEEeCCCc--hhhHHHHHHcCCCeEEEeccc
Q 012543 100 CLAKLLSNAEEKEEEPIACLITDASW--FFTHDVAESLKLPRIVLRSLS 146 (461)
Q Consensus 100 ~~~~l~~~~~~~~~~~pDlvi~D~~~--~~a~~~A~~lgiP~v~~~~~~ 146 (461)
.+|.+.. .+||+||..... .....-....++|++.+....
T Consensus 52 ~~E~i~~-------l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 52 NLEAILA-------LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp -HHHHHH-------T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred cHHHHHh-------CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 3456666 789999988766 445666778899999987764
No 334
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=34.97 E-value=9.5 Score=20.51 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=13.9
Q ss_pred CchHHHHHhhcCCcccc
Q 012543 361 GWNSTLESMCEGVPMIC 377 (461)
Q Consensus 361 G~gs~~eal~~GvP~l~ 377 (461)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67899999999998875
No 335
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=34.95 E-value=47 Score=32.62 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
.+||++.-.|+.|= +-...+.+.|.+.|++|.++.++.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHh
Confidence 45777776665554 558999999999999999988863
No 336
>PRK10037 cell division protein; Provisional
Probab=34.68 E-value=65 Score=29.30 Aligned_cols=36 Identities=22% Similarity=0.029 Sum_probs=31.1
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.|.+... |+-|-..-...||..|+++|++|.++=.+
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 6677666 78899999999999999999999998554
No 337
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=34.66 E-value=48 Score=31.08 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
|+|+++..|..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 478888776666 5678889999999999887
No 338
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=34.31 E-value=52 Score=29.06 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
=|++..+|+.|-.-..-.||++|.+++|+|.-++.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 466777899999999999999999999999887764
No 339
>PRK13055 putative lipid kinase; Reviewed
Probab=34.22 E-value=1e+02 Score=29.47 Aligned_cols=29 Identities=14% Similarity=-0.035 Sum_probs=23.1
Q ss_pred CCCCCccccccCchHHHHHhhc------CCccccCcc
Q 012543 350 HPATGAFWTHCGWNSTLESMCE------GVPMICQPC 380 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~~------GvP~l~~P~ 380 (461)
..++ +|--||=||+.|++.. .+|+-++|.
T Consensus 59 ~~d~--vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 59 GFDL--IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCCE--EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 3466 9999999999999753 477888996
No 340
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.14 E-value=62 Score=29.46 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=25.7
Q ss_pred HHHHHhhcccccCCCCccEEEeCCCchh--hHH-HHHHcCCCeEEEecc
Q 012543 100 CLAKLLSNAEEKEEEPIACLITDASWFF--THD-VAESLKLPRIVLRSL 145 (461)
Q Consensus 100 ~~~~l~~~~~~~~~~~pDlvi~D~~~~~--a~~-~A~~lgiP~v~~~~~ 145 (461)
.+|+++. .+||+||....... ... +.+.+|+|++.+...
T Consensus 66 n~E~i~~-------l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIAA-------LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHHh-------cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 4566666 78999998755432 122 334589999887644
No 341
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=34.10 E-value=84 Score=27.34 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=24.9
Q ss_pred CCccEEEeCC--CchhhHHHHHHcCCCeEEEec
Q 012543 114 EPIACLITDA--SWFFTHDVAESLKLPRIVLRS 144 (461)
Q Consensus 114 ~~pDlvi~D~--~~~~a~~~A~~lgiP~v~~~~ 144 (461)
.++|+|++=. ..+.|..+|..+|+|++.+..
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 5799999754 337788899999999999753
No 342
>PRK13054 lipid kinase; Reviewed
Probab=33.87 E-value=1.5e+02 Score=27.92 Aligned_cols=30 Identities=17% Similarity=-0.026 Sum_probs=23.7
Q ss_pred cCCCCCccccccCchHHHHHhhc------C--CccccCcc
Q 012543 349 AHPATGAFWTHCGWNSTLESMCE------G--VPMICQPC 380 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~~------G--vP~l~~P~ 380 (461)
...++ +|.-||=||+.|++.. + +|+-++|.
T Consensus 55 ~~~d~--vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 55 LGVAT--VIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred cCCCE--EEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 34466 9999999999999754 3 58889996
No 343
>PRK08462 biotin carboxylase; Validated
Probab=33.78 E-value=3.3e+02 Score=27.22 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=24.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
||+++..|.. .+++++++++.|++|+.+.+.
T Consensus 6 ~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~ 36 (445)
T PRK08462 6 RILIANRGEI-----ALRAIRTIQEMGKEAIAIYST 36 (445)
T ss_pred EEEEECCcHH-----HHHHHHHHHHcCCCEEEEech
Confidence 8888875543 678999999999998887664
No 344
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.58 E-value=4.1e+02 Score=26.26 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCC-Cceeee-------cCh
Q 012543 273 PKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGR-GHIVKW-------APQ 344 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~-~~~~~~-------vp~ 344 (461)
.+++++.-.||+.. -....+++.|.+.++++-++.+.... ++.. |..+ +...++ ++...| +.+
T Consensus 6 ~k~IllgvTGsiaa---~k~~~lv~~L~~~g~~V~vv~T~~A~---~fi~--~~~l-~~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 6 GKRIVLGVSGGIAA---YKALELVRRLRKAGADVRVVMTEAAK---KFVT--PLTF-QALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CCeEEEEEeCHHHH---HHHHHHHHHHHhCCCEEEEEECHhHH---HHHh--HHHH-HHhhCCceEccccccccCCCcch
Confidence 46677777787654 23455667777778776555554321 1111 1112 122222 222112 223
Q ss_pred hhhhcCCCCCccccccCchHHHH-------------HhhcCCccccCcccc----h---hhhhHHHHHHhhhceeecCC-
Q 012543 345 QEVLAHPATGAFWTHCGWNSTLE-------------SMCEGVPMICQPCHG----E---QMVIARYVSDVWKVGLHLER- 403 (461)
Q Consensus 345 ~~lL~~~~~~~~I~HGG~gs~~e-------------al~~GvP~l~~P~~~----D---Q~~na~~v~~~lG~G~~l~~- 403 (461)
-.+...+|+ .+|--+-+||+.- ++.+++|++++|-.. + -..|..++.+ +|+-+.-..
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ii~P~~ 154 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRS-RGVEIIGPAS 154 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHH-CCCEEECCCC
Confidence 334444554 3455555554433 356799999999432 2 2456677777 577655431
Q ss_pred ------------ccCHHHHHHHHHHHhc
Q 012543 404 ------------KLERGEVERAIRRVMV 419 (461)
Q Consensus 404 ------------~~~~~~l~~~i~~ll~ 419 (461)
-.++++|...+.+.+.
T Consensus 155 g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 155 GRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 2477888888887764
No 345
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.56 E-value=77 Score=29.71 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=33.5
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+|+++.=|+-|-..-.+.||..|+++|++|.++-.+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5788888899999999999999999999999988765
No 346
>PRK13337 putative lipid kinase; Reviewed
Probab=33.46 E-value=1.2e+02 Score=28.63 Aligned_cols=28 Identities=11% Similarity=-0.106 Sum_probs=22.4
Q ss_pred CCCCccccccCchHHHHHhhc------CCccccCcc
Q 012543 351 PATGAFWTHCGWNSTLESMCE------GVPMICQPC 380 (461)
Q Consensus 351 ~~~~~~I~HGG~gs~~eal~~------GvP~l~~P~ 380 (461)
.++ +|.-||=||+.|++.. ..|+-++|.
T Consensus 58 ~d~--vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 58 FDL--VIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCE--EEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 455 9999999999999762 357888895
No 347
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=33.28 E-value=72 Score=27.39 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHhhcccccCCCCccEEEeCCCchh-hHHHHHHcCCCeEEEec
Q 012543 100 CLAKLLSNAEEKEEEPIACLITDASWFF-THDVAESLKLPRIVLRS 144 (461)
Q Consensus 100 ~~~~l~~~~~~~~~~~pDlvi~D~~~~~-a~~~A~~lgiP~v~~~~ 144 (461)
.++.+++ .+||+||....... .....++.|+|++.+..
T Consensus 52 n~E~l~~-------l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 52 NVEKIVA-------LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CHHHHhc-------cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 4566666 78999998754322 33455778999888754
No 348
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=33.27 E-value=57 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=24.3
Q ss_pred CCccEEEeCCCc--hhhHHHHHHcCCCeEEEecc
Q 012543 114 EPIACLITDASW--FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 114 ~~pDlvi~D~~~--~~a~~~A~~lgiP~v~~~~~ 145 (461)
..||+||.-.-. ..+..=|.++|||+|.+..+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 679998865432 45666789999999998766
No 349
>PRK13695 putative NTPase; Provisional
Probab=32.84 E-value=2.3e+02 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=27.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEE
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSIT 46 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~ 46 (461)
|+|++...++.|=..-+..++..|..+|+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 68899988899988888899999988898875
No 350
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=32.81 E-value=88 Score=25.47 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=29.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 18 ILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 18 l~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+++..|..--++|..-++...++.|++|+++.+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 345668889999999999999999999999888
No 351
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=32.74 E-value=1.4e+02 Score=25.21 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=20.6
Q ss_pred ccccccCc------hHHHHHhhcCCccccCccc
Q 012543 355 AFWTHCGW------NSTLESMCEGVPMICQPCH 381 (461)
Q Consensus 355 ~~I~HGG~------gs~~eal~~GvP~l~~P~~ 381 (461)
++++|.|. +++.+|...++|+|++.-.
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 38888874 4778889999999999753
No 352
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.72 E-value=73 Score=29.34 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=21.9
Q ss_pred CeEEEEEccccccCCHH-HHHHHHHHHHh--CCCceEEEECCC
Q 012543 274 KSVIYVSFGSIAAIDET-KFLEVAWGLAN--SKVPFLWVVRPG 313 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~-~~~~~~~a~~~--~~~~~i~~~~~~ 313 (461)
|.++++||||....... .+..+.+.++. .++.+-|.+++.
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 35788888887764333 66666666665 356677776664
No 353
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.69 E-value=61 Score=31.99 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
++||++.-.|+. ..+-...+.+.|++.|++|.++.++..
T Consensus 6 ~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A 44 (399)
T PRK05579 6 GKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAA 44 (399)
T ss_pred CCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 567877766655 555788999999999999999988643
No 354
>PRK13059 putative lipid kinase; Reviewed
Probab=32.66 E-value=1.2e+02 Score=28.56 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=23.2
Q ss_pred CCCCCccccccCchHHHHHh---h---cCCccccCcc
Q 012543 350 HPATGAFWTHCGWNSTLESM---C---EGVPMICQPC 380 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal---~---~GvP~l~~P~ 380 (461)
..++ +|.-||=||+.|++ . .++|+-++|.
T Consensus 56 ~~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 4466 99999999999885 2 3589999996
No 355
>PRK06835 DNA replication protein DnaC; Validated
Probab=32.62 E-value=84 Score=30.10 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=32.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
..++|+..++.|-..=+.++|++|.++|+.|.|++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 5688888888999999999999999999999998763
No 356
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=32.56 E-value=92 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=24.1
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHhCCC
Q 012543 276 VIYVSFGSIAAIDETKFLEVAWGLANSKV 304 (461)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (461)
.+|+++||-.......++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999888777778888888888764
No 357
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=32.53 E-value=74 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=32.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+|.+..=|+-|-..-...||..|+++|++|.++-.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4677776789999999999999999999999987554
No 358
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=32.52 E-value=95 Score=27.83 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=29.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEEeC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFS-ITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~-V~~~~~ 50 (461)
=|+|+..|..|--.....|.+.|+++||+ ++.+..
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 67888889999999999999999999986 444443
No 359
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.31 E-value=58 Score=29.90 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCCCCccccccCchHHHHHhh-cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 350 HPATGAFWTHCGWNSTLESMC-EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+|+ +|+=||-||+..|+. .++|++.+-.. .+|-.. ..+.+++.+.+.++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~--~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS--SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc--ccCHHHHHHHHHHHHcC
Confidence 4566 999999999999977 47777665311 011111 46777888888887775
No 360
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.09 E-value=78 Score=24.85 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=29.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 17 LILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
++..+.++..|.....-++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5667778899999999999999999999998754
No 361
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.98 E-value=91 Score=26.46 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+..+|++++.++ ..=.=-+.+|+.|.++|++|+++..
T Consensus 24 ~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 456777777553 3334567899999999999999443
No 362
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.95 E-value=52 Score=30.36 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=36.3
Q ss_pred CCCCCccccccCchHHHHHhhc-----CCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 350 HPATGAFWTHCGWNSTLESMCE-----GVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+|+ +|+=||=||+..++.. .+|++.+-..+ .+|- +. ..+.+++.+++.+++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGF-L~-~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGF-YC-DFHIDDLDKMIQAITKE 97 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeE-cc-cCCHHHHHHHHHHHHcC
Confidence 3576 9999999999999874 56665553200 1121 11 46778888888888876
No 363
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=31.68 E-value=87 Score=24.99 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=27.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 18 ILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 18 l~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+++.+|..++-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 566667777788899999999999999998844
No 364
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=31.25 E-value=98 Score=22.86 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCcc----CHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLPFQG----HINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~~~G----Hi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
..+|-+-|+.+.| +.+.+-.|-..|++.||+|.+.-++
T Consensus 6 ~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~ 47 (88)
T PF15092_consen 6 YVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIE 47 (88)
T ss_pred EEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEec
Confidence 3445555555555 5678889999999999999998775
No 365
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=30.91 E-value=93 Score=31.23 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=30.3
Q ss_pred eEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLP---FQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~---~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|.+|+|.| +.|-=.-..+||+-|++||++||..=-+
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlD 40 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLD 40 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecc
Confidence 66777775 6688889999999999999999997654
No 366
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=30.87 E-value=70 Score=27.41 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=22.8
Q ss_pred cCHHH-HHHHHHHHHh-CCCeEEEEeCCCC
Q 012543 26 GHINP-MLQLANILYS-KGFSITIIHTKFN 53 (461)
Q Consensus 26 GHi~p-~l~La~~L~~-rGh~V~~~~~~~~ 53 (461)
||... .+.+.++|++ +||+|.++.++..
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 77766 8899999985 5999999988633
No 367
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=30.87 E-value=2.4e+02 Score=24.60 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=37.8
Q ss_pred hhcCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 369 MCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 369 l~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.....|+|++--++|=+.--+...+ |+---+.+.++...|.++|.+.++.
T Consensus 73 ~~~~~PVIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 73 RGIRLPVIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 4457899999999998877665553 5544455578899999999999876
No 368
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=30.71 E-value=84 Score=28.85 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=31.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+|.+..=|+-|-..-.+.||..|+++|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4677776688999999999999999999999988554
No 369
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.64 E-value=78 Score=27.98 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=22.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++.++..| ++- -.||+.|...||+|++.+..
T Consensus 3 ~~~i~GtG---niG--~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 3 IIAIIGTG---NIG--SALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEEeccC---hHH--HHHHHHHHhCCCeEEEecCC
Confidence 55555444 433 47889999999999998764
No 370
>PRK02399 hypothetical protein; Provisional
Probab=30.47 E-value=2.6e+02 Score=27.59 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=53.2
Q ss_pred CCeEEEEEc-cccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCcee---eecChhhhh
Q 012543 273 PKSVIYVSF-GSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIV---KWAPQQEVL 348 (461)
Q Consensus 273 ~~~~v~vs~-Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~---~~vp~~~lL 348 (461)
.||.|-+|+ |. ...-.+.+.+.|++.++++++.-..+. + ..-+|++-..+.+. +.-.+...=
T Consensus 185 ~kp~Ig~TmfGv----Ttp~v~~~~~~Le~~GyEvlVFHATG~--G--------GraME~Li~~G~~~gVlDlTttEv~d 250 (406)
T PRK02399 185 DKPLIGLTMFGV----TTPCVQAAREELEARGYEVLVFHATGT--G--------GRAMEKLIDSGLIAGVLDLTTTEVCD 250 (406)
T ss_pred CCceEEEecCCC----cHHHHHHHHHHHHhCCCeEEEEcCCCC--c--------hHHHHHHHHcCCceEEEEcchHHHHH
Confidence 577877765 54 346677788899999998876654432 1 11222222222332 332222211
Q ss_pred cCCCCCccccccCchHHHHHhhcCCccccCcc
Q 012543 349 AHPATGAFWTHCGWNSTLESMCEGVPMICQPC 380 (461)
Q Consensus 349 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 380 (461)
..+. =|..+|-.=.-.|...|+|+|+.|-
T Consensus 251 ~l~G---Gv~sagp~Rl~Aa~~~gIP~Vvs~G 279 (406)
T PRK02399 251 ELFG---GVLAAGPDRLEAAARTGIPQVVSPG 279 (406)
T ss_pred HHhC---cCccCCccHHHHHHHcCCCEEecCC
Confidence 1111 3455677788889999999998884
No 371
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=30.40 E-value=5.4e+02 Score=25.36 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=33.2
Q ss_pred CchHHHHHhhcCCcccc--Ccccchh------hhhHHHHHHhhhceeecCC--ccCHHHHHHHHHHHhcc
Q 012543 361 GWNSTLESMCEGVPMIC--QPCHGEQ------MVIARYVSDVWKVGLHLER--KLERGEVERAIRRVMVD 420 (461)
Q Consensus 361 G~gs~~eal~~GvP~l~--~P~~~DQ------~~na~~v~~~lG~G~~l~~--~~~~~~l~~~i~~ll~~ 420 (461)
|+.++..|+.+|.|+-. ++..+|- -.|+.++.+. ..+. .++.+++..+|.+++.|
T Consensus 252 ~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~-----~~d~vvvV~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 252 GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQK-----LVDRVVVVEDDEIAAAILRLFED 316 (457)
T ss_pred CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHh-----cCceEEEeccHHHHHHHHHHHHh
Confidence 46688888888887621 1122221 2233333332 1222 57889999999999988
No 372
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=30.33 E-value=5.3e+02 Score=25.22 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhH------------HHHhcCCCcee--eecChhh-
Q 012543 282 GSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGF------------LEMLDGRGHIV--KWAPQQE- 346 (461)
Q Consensus 282 Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~------------~~~~~~~~~~~--~~vp~~~- 346 (461)
.|....+..-+..+++++...+.++...+..+. ....+ .....+++.+. +|+||.+
T Consensus 187 vslF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~---------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~y 257 (374)
T PF10093_consen 187 VSLFCYENAALASLLDAWAASPKPVHLLVPEGR---------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDY 257 (374)
T ss_pred EEEEeCCchHHHHHHHHHhcCCCCeEEEecCCc---------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHHH
Q ss_pred --hhcCCCCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhh--hceeecCC--ccCHHHHHHHHHHHhcc
Q 012543 347 --VLAHPATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVW--KVGLHLER--KLERGEVERAIRRVMVD 420 (461)
Q Consensus 347 --lL~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~l--G~G~~l~~--~~~~~~l~~~i~~ll~~ 420 (461)
+|-.|| +--==|==|+.-|..+|+|.|=-..--|....-..++. + .....+.. ..+-..+-.+-+..-..
T Consensus 258 D~LLw~cD---~NfVRGEDSfVRAqwAgkPFvWhIYpQ~d~aHl~KL~A-FL~~y~~~~~~~~~~a~~~~~~~wN~~~~~ 333 (374)
T PF10093_consen 258 DRLLWACD---FNFVRGEDSFVRAQWAGKPFVWHIYPQEDDAHLDKLDA-FLDRYCAGLPPEAAAALRAFWRAWNGGQDA 333 (374)
T ss_pred HHHHHhCc---cceEecchHHHHHHHhCCCceEecCcCchhhHHHHHHH-HHHHHhhcCCHHHHHHHHHHHHHHhCCCCc
Q ss_pred hh-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 421 AE-GREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 421 ~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
.+ -..+.++...+++..+.-....-.....++.|++++++
T Consensus 334 ~~~w~~~~~~~~~~~~~a~~w~~~l~~~~dLa~~L~~F~~n 374 (374)
T PF10093_consen 334 PDAWQDLLEHLPEWQQHARAWRQQLLAQGDLASNLVQFVEN 374 (374)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
No 373
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=30.27 E-value=4.7e+02 Score=29.24 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+.+|+++++.+. -..++++.|.+.|-+|..++.
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~ 351 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGT 351 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcC
Confidence 457888876442 356688888889999987655
No 374
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=29.77 E-value=48 Score=29.80 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=21.3
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 19 LFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 19 ~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+++..+.|-+ -.++|++|.++|++|+++..
T Consensus 18 ~itN~SSGgI--G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHSTGHL--GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred eecCCcccHH--HHHHHHHHHHCCCEEEEEcC
Confidence 4444444433 35789999999999998753
No 375
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.75 E-value=67 Score=28.83 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=25.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+++++..|-.| ..+|+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 466676666544 67999999999999998775
No 376
>PRK04328 hypothetical protein; Provisional
Probab=29.57 E-value=4.3e+02 Score=23.96 Aligned_cols=37 Identities=14% Similarity=-0.106 Sum_probs=30.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
--+++...|+.|-..-.++++.+-.++|+.+.|++.+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 3566677789999888888887767889999999985
No 377
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=29.54 E-value=83 Score=30.01 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=24.0
Q ss_pred CCccEEEeC-CCc-hhhHHHHHHcCCCeEEEecc
Q 012543 114 EPIACLITD-ASW-FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 114 ~~pDlvi~D-~~~-~~a~~~A~~lgiP~v~~~~~ 145 (461)
..||+||.- ... ..+..=|.++|||+|.+..+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 368988754 433 55666799999999998766
No 378
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=29.36 E-value=1.2e+02 Score=26.32 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.4
Q ss_pred eEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILF-PLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~-~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.|+++ +-|+-|-..-...||..|+++|++|.++-..
T Consensus 19 vI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 19 VLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 44444 3367788889999999999999999987664
No 379
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=29.27 E-value=52 Score=28.52 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=43.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCC-CCCCCCC-C-CCCceEEEcCCCCCCCcCCcccHHHHHHHHH
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSK--GFSITIIHTK-FNSPNPS-N-YPHFTFCSIQDGLSETEASTTDFVALISVLH 90 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~r--Gh~V~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
.++-+-..+-|-+....+|+++|.++ |+.|.+-++. ....... . ...+....+|-+ .......+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D----------~~~~~~rf- 90 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLD----------FPWAVRRF- 90 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---S----------SHHHHHHH-
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCcc----------CHHHHHHH-
Confidence 33334446789999999999999987 8888886652 1111111 0 012223333311 11111111
Q ss_pred HHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhh--HHHHHHcCCCeEEEe
Q 012543 91 VKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFT--HDVAESLKLPRIVLR 143 (461)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a--~~~A~~lgiP~v~~~ 143 (461)
++. ++||++|.-....|- ...|++.|||.+.+.
T Consensus 91 ----------l~~----------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 91 ----------LDH----------WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ----------HHH----------H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ----------HHH----------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 122 679999977665444 446788899999975
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=29.26 E-value=1.2e+02 Score=28.12 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+...|+|+..++.|-.--...||..|+.+|++|.++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345667777789999999999999999999999999886
No 381
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.08 E-value=27 Score=30.93 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=30.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 17 LILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
+++-.--+.|--.-.++++--+...||.|++++++..
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 3444445889999999999999999999999999743
No 382
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.93 E-value=2.1e+02 Score=29.51 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=61.5
Q ss_pred ccCHHHHHHHH-HHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCC-CC------------CCCc--CCcccHHHHHHH
Q 012543 25 QGHINPMLQLA-NILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQD-GL------------SETE--ASTTDFVALISV 88 (461)
Q Consensus 25 ~GHi~p~l~La-~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~--~~~~~~~~~~~~ 88 (461)
.|++.-.+.+| +.+.+.|++|.+.-. .+...+.+.-.+..+.++- ++ .... ....+.......
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~ 114 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRR 114 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHH
Confidence 47788888888 446677999988654 3332222222355555541 11 1100 011111111222
Q ss_pred HHHHc-----------chhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecc
Q 012543 89 LHVKC-----------AAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 89 ~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~ 145 (461)
+...+ .....+.++++.+ .+.++||.|. -+..+|+++|++.|.+.+.
T Consensus 115 ~~~ll~~~i~~~~~~~~~e~~~~~~~l~~-------~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 115 FQAAFNLDIVQRSYVTEEDARSCVNDLRA-------RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHhCCceEEEEecCHHHHHHHHHHHHH-------CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 22221 2233446666666 7899999995 2578999999999998765
No 383
>PRK08181 transposase; Validated
Probab=28.67 E-value=1e+02 Score=28.56 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
...++|+..++.|-..-..+++.++.++|+.|.|++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 3457777777788777788888888888888877654
No 384
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.66 E-value=69 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=19.6
Q ss_pred CCccCH--HHHHHHHHHHHhCCCeEEEEeC
Q 012543 23 PFQGHI--NPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 23 ~~~GHi--~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+...++ +|.+.|+++|.++|.+|.+.=+
T Consensus 9 ~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 9 PNTDDIRESPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp TTSS--TT-HHHHHHHHHHHTT-EEEEE-T
T ss_pred CCCcccccCHHHHHHHHHHHCCCEEEEECC
Confidence 445555 8999999999999999988665
No 385
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=28.62 E-value=4.7e+02 Score=26.58 Aligned_cols=37 Identities=3% Similarity=-0.131 Sum_probs=32.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
-+++...|+.|-..-.++++.+.+++|+.+.+++.+.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 5677777899999999999999999999999999863
No 386
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.61 E-value=1.2e+02 Score=25.97 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCC
Q 012543 272 APKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHP 351 (461)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~ 351 (461)
.++.+..+.+|.++ ..+++.++..+.+++..-.... .. ....+ ....+.+.+++|+.+
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--------~~-~~~~~------~~~~~~~l~ell~~a 92 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--------PE-EGADE------FGVEYVSLDELLAQA 92 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--------HH-HHHHH------TTEEESSHHHHHHH-
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--------hh-hhccc------ccceeeehhhhcchh
Confidence 36788899999766 4556666677888765554431 00 11100 234777889999999
Q ss_pred CCCccccccCchHHHHHhhcCCccccCcccchhhhhHHHHHHhhhceeecC---C--ccCHHHHHHHHH
Q 012543 352 ATGAFWTHCGWNSTLESMCEGVPMICQPCHGEQMVIARYVSDVWKVGLHLE---R--KLERGEVERAIR 415 (461)
Q Consensus 352 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~---~--~~~~~~l~~~i~ 415 (461)
|+ ++.|.-.+. ......|+..++. ++-|..+- + -++.++|.++++
T Consensus 93 Di--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 93 DI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 98 777664321 1345677777777 67664442 2 456666666654
No 387
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.61 E-value=1.1e+02 Score=22.61 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=27.4
Q ss_pred eEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLPFQ--GHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~--GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.|+++|.+.. .+..-...++..|++.|..|.+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 6778886643 5667788999999999999988543
No 388
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.43 E-value=95 Score=31.11 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
..+||+++..|..| ++.++.|.++|++|++.-..
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCC
Confidence 46799999999998 89999999999999997753
No 389
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.34 E-value=1.3e+02 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=28.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012543 17 LILFPLPFQGHINPMLQLANILYSKGFSITIIH 49 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~ 49 (461)
+++...++.|-.--...++..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788888999999999999999998876
No 390
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=28.23 E-value=80 Score=31.95 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCC--CCCCCc---CCcccHHHHHHHHHHHcchhHHHHHHH
Q 012543 29 NPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQD--GLSETE---ASTTDFVALISVLHVKCAAPFQDCLAK 103 (461)
Q Consensus 29 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (461)
.-++.+|+.|.+.|+++. .+.. ....+ +..|+.+..+.+ ++|+.. ..+..+.-.-..+.+.-.. + +++
T Consensus 11 ~~iv~lAk~L~~lGfeIi-ATgG-Tak~L-~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~---~-~~~ 83 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL-STGG-TAKLL-AEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDD---D-DAD 83 (511)
T ss_pred ccHHHHHHHHHHCCCEEE-Eech-HHHHH-HHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCch---H-HHH
Confidence 446789999999999995 3432 22221 225777777753 555544 2233332222222222222 2 334
Q ss_pred HhhcccccCCCCccEEEeCCC
Q 012543 104 LLSNAEEKEEEPIACLITDAS 124 (461)
Q Consensus 104 l~~~~~~~~~~~pDlvi~D~~ 124 (461)
+.+..- ...|+||++..
T Consensus 84 l~~~~I----~~IDlVvvNLY 100 (511)
T TIGR00355 84 LEEHGI----EPIDLVVVNLY 100 (511)
T ss_pred HHHcCC----CceeEEEEecc
Confidence 443322 67899999944
No 391
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=28.19 E-value=76 Score=33.01 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=49.7
Q ss_pred EccccccCCH-HHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecC-----h-----hhhh
Q 012543 280 SFGSIAAIDE-TKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAP-----Q-----QEVL 348 (461)
Q Consensus 280 s~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-----~-----~~lL 348 (461)
|.||...... ...+.+++.|++.|.+.++-+.++. ...+-+.+.+ ..+++++.--. + ..+-
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~------~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA------ILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc------cHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHc
Confidence 3455444222 4466788888888888888877753 1112222211 11222221111 0 1111
Q ss_pred cCCCCCccccccCch------HHHHHhhcCCccccCc
Q 012543 349 AHPATGAFWTHCGWN------STLESMCEGVPMICQP 379 (461)
Q Consensus 349 ~~~~~~~~I~HGG~g------s~~eal~~GvP~l~~P 379 (461)
.++. ++++|.|-| .+++|-+.++|+|++.
T Consensus 75 g~~g--v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPA--VCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCe--EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 2333 478887754 7899999999999995
No 392
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=28.09 E-value=5.8e+02 Score=24.95 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
-+++...|+.|-..-+++++..+...|.+|.|++.+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456667789999999999999999999999998875
No 393
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=27.97 E-value=75 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012543 31 MLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 31 ~l~La~~L~~rGh~V~~~~~~ 51 (461)
-+..|..|+++|++|+++-..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 367789999999999998764
No 394
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=27.95 E-value=70 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=25.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
|||+++..|..| ..+|..|.+.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 578888777666 4578889999999999877
No 395
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.94 E-value=1.2e+02 Score=27.57 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=24.9
Q ss_pred CeEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 15 RRLILFPLPFQG-HINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 15 ~~il~~~~~~~G-Hi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.|+++++.++.| -+- .++|+.|+++|++|.+...
T Consensus 10 ~k~~lItGas~g~GIG--~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 10 GKRGLVVGIANEQSIA--WGCARAFRALGAELAVTYL 44 (258)
T ss_pred CCEEEEECCCCCCcHH--HHHHHHHHHcCCEEEEEeC
Confidence 377788866542 332 7889999999999988654
No 396
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=27.87 E-value=91 Score=29.24 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=28.0
Q ss_pred CCeEEEEcCC-CccCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLP-FQGHIN---PMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~-~~GHi~---p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+++|++++.+ +.=|-. -...+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 5688887754 333433 5678999999999999998653
No 397
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.72 E-value=79 Score=29.86 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|+|.|+..|..| .++|+.|.+.||+|++....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 5789998777655 57899999999999987763
No 398
>PRK12342 hypothetical protein; Provisional
Probab=27.71 E-value=1.1e+02 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=24.6
Q ss_pred CCccEEEeCCCc------hhhHHHHHHcCCCeEEEecc
Q 012543 114 EPIACLITDASW------FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 114 ~~pDlvi~D~~~------~~a~~~A~~lgiP~v~~~~~ 145 (461)
..||+|++-..+ .-+..+|+.||+|++.....
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 349999986443 23688999999999997654
No 399
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=27.54 E-value=1.3e+02 Score=28.74 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++..+|+++.-|+.|-..-...||..|+++|++|.++..+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 3455667777789999999999999999999999998664
No 400
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=27.46 E-value=1.1e+02 Score=28.05 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=24.6
Q ss_pred CCccEEEeCCCc------hhhHHHHHHcCCCeEEEecc
Q 012543 114 EPIACLITDASW------FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 114 ~~pDlvi~D~~~------~~a~~~A~~lgiP~v~~~~~ 145 (461)
..||+|++-..+ .-+..+|+.||+|++.....
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 349999986433 34678999999999997655
No 401
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=27.37 E-value=71 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=23.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
++|.|+..|..| .++|+.|.++||+|+.+-.
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 388888887655 5789999999999998654
No 402
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=27.36 E-value=1.3e+02 Score=28.30 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeC
Q 012543 14 GRRLILFPLPFQG-H---INPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 14 ~~~il~~~~~~~G-H---i~p~l~La~~L~~rGh~V~~~~~ 50 (461)
++||+++..|..+ | +...-+++++|.+.||+|.++..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 6688888865333 2 34556889999999999988643
No 403
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=27.31 E-value=77 Score=28.01 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=21.6
Q ss_pred CCccEEEeCCCch-------hhHHHHHHcCCCeEEEecc
Q 012543 114 EPIACLITDASWF-------FTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 114 ~~pDlvi~D~~~~-------~a~~~A~~lgiP~v~~~~~ 145 (461)
.+||+|++|.... .|..++-.+++|+|.++=.
T Consensus 88 ~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~ 126 (206)
T PF04493_consen 88 NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKS 126 (206)
T ss_dssp S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS
T ss_pred ccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCc
Confidence 6799999997542 3566788889999998633
No 404
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=27.29 E-value=74 Score=29.18 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=26.7
Q ss_pred eEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLP---FQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~---~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|.+|++.| +.|-=.-..+|++-|+++|++|+..=-+
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~D 40 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKID 40 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeec
Confidence 66777765 5677778899999999999999997554
No 405
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=27.22 E-value=98 Score=29.35 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=28.6
Q ss_pred CeEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLP---FQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~---~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+|+|+.-| -.-+.+-..+|.++.++|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 467776654 2345567889999999999999999985
No 406
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=27.00 E-value=1.9e+02 Score=24.39 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 424 REMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 424 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
+++-++.+.++..++ +|.-..+..++|-+.++++
T Consensus 123 pd~~~Ri~~~~~~i~----~G~pv~~~~~e~~~iv~Rv 156 (158)
T TIGR02898 123 PDTVERIRRYGKGIK----EGRPVEGFLDELAEIVRRV 156 (158)
T ss_pred HHHHHHHHHHHHHhH----cCCChHHHHHHHHHHHHhc
Confidence 789999999999999 8888888888888877663
No 407
>PRK08939 primosomal protein DnaI; Reviewed
Probab=26.95 E-value=1.2e+02 Score=28.64 Aligned_cols=38 Identities=29% Similarity=0.244 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
..-++++..+|.|-.+-+.++|.+|.++|+.|+|+..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 34678888889999999999999999999999998764
No 408
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=26.88 E-value=5.4e+02 Score=26.85 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcC
Q 012543 271 QAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAH 350 (461)
Q Consensus 271 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~ 350 (461)
+.++.++++++|++. ......++.|...+..+ -++.... .+.|.+.+ ...+..+
T Consensus 499 ~~G~~vail~~G~~~----~~al~vae~L~~~Gi~~-TVvd~rf------vkPlD~~l---------------l~~La~~ 552 (627)
T COG1154 499 KEGEKVAILAFGTML----PEALKVAEKLNAYGISV-TVVDPRF------VKPLDEAL---------------LLELAKS 552 (627)
T ss_pred ecCCcEEEEecchhh----HHHHHHHHHHHhcCCCc-EEEcCee------cCCCCHHH---------------HHHHHhh
Q ss_pred CCCCcccc------ccCchHHHHHhh--cC--CccccCcc---cchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHH
Q 012543 351 PATGAFWT------HCGWNSTLESMC--EG--VPMICQPC---HGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRV 417 (461)
Q Consensus 351 ~~~~~~I~------HGG~gs~~eal~--~G--vP~l~~P~---~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~l 417 (461)
-++ +|| +||.||-..-.. +| +|++.+.+ +.||-.-.....+. .++++.|.+.|...
T Consensus 553 h~~--~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~---------gLd~~~i~~~i~~~ 621 (627)
T COG1154 553 HDL--VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAEL---------GLDAEGIARRILEW 621 (627)
T ss_pred cCe--EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHc---------CCCHHHHHHHHHHH
Q ss_pred h
Q 012543 418 M 418 (461)
Q Consensus 418 l 418 (461)
+
T Consensus 622 l 622 (627)
T COG1154 622 L 622 (627)
T ss_pred H
No 409
>PRK12367 short chain dehydrogenase; Provisional
Probab=26.83 E-value=74 Score=28.86 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=28.6
Q ss_pred cccccccCC-CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 5 GESHMQQKK-GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 5 ~~~~m~~~~-~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+-++|++.| +.+.++++.++.| --.+++++|.++|++|+++..
T Consensus 3 ~~~~~~~~~l~~k~~lITGas~g---IG~ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 3 QADPMAQSTWQGKRIGITGASGA---LGKALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred CcchhhHHhhCCCEEEEEcCCcH---HHHHHHHHHHHCCCEEEEEEC
Confidence 346777664 3355666644432 236788999999999988765
No 410
>PRK10490 sensor protein KdpD; Provisional
Probab=26.80 E-value=84 Score=34.85 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=35.4
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+-++||.+-..|+-|-.+.|+.-|++|+++|++|.+-.-+
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 3478999999999999999999999999999999875543
No 411
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.71 E-value=1.6e+02 Score=25.59 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=39.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC----------CCCCCCceEEEcCCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPN----------PSNYPHFTFCSIQDG 71 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 71 (461)
..|+|+..++.-|-.-+..++++|++.|-.|.+++-...... ..+..+-+++.+|.+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 447788888788877788999999999999988876532211 122245777777754
No 412
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=26.67 E-value=89 Score=31.58 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
.++|++...|+.+ .+=...|++.|+++|++|.++.++..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA 108 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAA 108 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCH
Confidence 5678777666554 45788999999999999999998643
No 413
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=69 Score=32.27 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=24.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|||+++.-|-- -++-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEecc
Confidence 46777665543 478899999999999998764
No 414
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.59 E-value=1.1e+02 Score=30.28 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=25.2
Q ss_pred cccccCchHHHHHhhcCCccccCcccc--hhhhhHHHHHH
Q 012543 356 FWTHCGWNSTLESMCEGVPMICQPCHG--EQMVIARYVSD 393 (461)
Q Consensus 356 ~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~ 393 (461)
.-|.||.-.+.|-=.+|+|+|.+-... -+-.-|.|+..
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp 387 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP 387 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec
Confidence 567777777777788999999876422 22333556664
No 415
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=26.53 E-value=36 Score=31.01 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=22.5
Q ss_pred CCCCccccccCchHHHHHhhc----CCccccCcc
Q 012543 351 PATGAFWTHCGWNSTLESMCE----GVPMICQPC 380 (461)
Q Consensus 351 ~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~ 380 (461)
+|+ +|+-||=||+..++.. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999988664 688877753
No 416
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=26.53 E-value=96 Score=27.28 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.++|+++..|.-| ...++.|.+.|++|+++.+.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 45688888766544 56789999999999999864
No 417
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=26.52 E-value=1e+02 Score=30.29 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHH----------HHHHcCCCeEE
Q 012543 88 VLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHD----------VAESLKLPRIV 141 (461)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~----------~A~~lgiP~v~ 141 (461)
++.+...+..+..++-+.+ .+||++|+-+.|-.+.. +.++++||.+.
T Consensus 56 Yf~en~eea~~~i~~mv~k-------~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKG-------ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFT 112 (431)
T ss_pred hhhhCHHHHHHHHHHHHHh-------cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEE
No 418
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=26.48 E-value=4.2e+02 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=32.2
Q ss_pred hhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceE
Q 012543 264 CISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFL 307 (461)
Q Consensus 264 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 307 (461)
+.+|+... .+.+.||=+-|.........+...++|++.|..+.
T Consensus 24 i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 24 IANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred HHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 34455442 56899999888887666778889999999998754
No 419
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=26.25 E-value=1.4e+02 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=23.9
Q ss_pred CCccEEEeCC--CchhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDA--SWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~--~~~~a~~~A~~lgiP~v~~~ 143 (461)
.++|+|++=. ..+.|..+|..+|+|++.+.
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 6799998653 33668889999999999974
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.12 E-value=1e+02 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=31.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|++.+..+.+|-.----++..|.+.|++|+.+...
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~ 36 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVL 36 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 478888899999999999999999999999997764
No 421
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=25.97 E-value=60 Score=31.98 Aligned_cols=26 Identities=31% Similarity=0.568 Sum_probs=21.5
Q ss_pred cCHHHHH---HHHHHHHhCCCeEEEEeCC
Q 012543 26 GHINPML---QLANILYSKGFSITIIHTK 51 (461)
Q Consensus 26 GHi~p~l---~La~~L~~rGh~V~~~~~~ 51 (461)
||+.|.+ .+++-++.+||+|.|++.-
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGt 45 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGT 45 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEec
Confidence 9999877 5788888999999998874
No 422
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=25.72 E-value=1.3e+02 Score=28.71 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=33.7
Q ss_pred eEEE--EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 16 RLIL--FPLPFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 16 ~il~--~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
-|.+ ++.|+.|-.--.+.|++.|.++|++|.+++-.+.
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 5566 7889999999999999999999999999998754
No 423
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.66 E-value=77 Score=33.01 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=37.7
Q ss_pred CCCCCccccccCchHHHHHhh----cCCccccCcccchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHhcc
Q 012543 350 HPATGAFWTHCGWNSTLESMC----EGVPMICQPCHGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVMVD 420 (461)
Q Consensus 350 ~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll~~ 420 (461)
.+++ +|+-||=||++.+.. .++|++.+-+.. +|. +. ..+.+++.+++.+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G~------------lGF---L~-~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMGT------------VGF---LT-EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCCC------------CCc---Cc-ccCHHHHHHHHHHHHcC
Confidence 4566 999999999999976 377887774210 121 11 46778888888888876
No 424
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=25.62 E-value=91 Score=31.42 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIH 49 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~ 49 (461)
.+.++|+|+..|..| +-++|+.|+++|++|+..-
T Consensus 5 ~~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 5 RRIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSD 38 (461)
T ss_pred CCCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEEC
Confidence 345689999998877 3348999999999998754
No 425
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=25.59 E-value=97 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=25.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|.|+-.|..| .++|+.|.++||+|+++...
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 67788777665 58899999999999997653
No 426
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=25.52 E-value=1.3e+02 Score=32.30 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcccccCCCCccEEEeCCCc-hhhHHHHHHcCCCeEEEecccHHHHHHH
Q 012543 97 FQDCLAKLLSNAEEKEEEPIACLITDASW-FFTHDVAESLKLPRIVLRSLSVSSSLVY 153 (461)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~pDlvi~D~~~-~~a~~~A~~lgiP~v~~~~~~~~~~~~~ 153 (461)
+++.++.+.+..+ .+||+|++|..- +.....|+.+++|.+.+...-++..+..
T Consensus 401 ~~~~~~~~~~l~~----~~p~~i~~D~HP~y~st~~a~~~~~~~~~vQHH~AH~~a~m 454 (711)
T TIGR00143 401 FKEALNFFLRIYD----FEPQDIVCDLHPQYNTTQYAEELSLPVLRVQHHHAHALAVM 454 (711)
T ss_pred HHHHHHHHHHHHC----CCCCEEEEeCCCCchhHHHHHHcCCCeeeeeHHHHHHHHHH
Confidence 3444455555444 889999999765 4566678999999999998877665543
No 427
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.25 E-value=1.2e+02 Score=23.92 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
...++++++|+. +...+..++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 457888888877 56789999999999999999766
No 428
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=25.25 E-value=30 Score=34.46 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.++|+++.+|++|| +.|.-|+..|++|++...+
T Consensus 35 kgKtIaIIGyGSqG~-----AqAlNLrdSGvnVvvglr~ 68 (487)
T PRK05225 35 KGKKIVIVGCGAQGL-----NQGLNMRDSGLDISYALRK 68 (487)
T ss_pred CCCEEEEEccCHHHH-----HHhCCCccccceeEEeccc
Confidence 568999999999999 5666677789999987764
No 429
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=25.23 E-value=1.5e+02 Score=25.57 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++||++--.|+.|-++. +.|.+.|++.|+++.++.+.
T Consensus 2 ~~riivgisGASG~iyg-vrlLe~L~~~~~e~hlviS~ 38 (191)
T COG0163 2 MKRIIVGISGASGAIYG-VRLLEVLRELGVETHLVISK 38 (191)
T ss_pred CcEEEEEEeccccHHHH-HHHHHHHHhcCceEEEEEcH
Confidence 45788877788887764 67889999999999998886
No 430
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=25.19 E-value=2.8e+02 Score=25.10 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=29.5
Q ss_pred hhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceE
Q 012543 264 CISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFL 307 (461)
Q Consensus 264 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 307 (461)
+.+|+.. .++++||-.-|...........+.+++++++..+.
T Consensus 24 ~~~~~~~--~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~ 65 (233)
T PRK05282 24 IAELLAG--RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVT 65 (233)
T ss_pred HHHHHcC--CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4556652 57799998877554445667778889999888754
No 431
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=25.18 E-value=97 Score=31.47 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=49.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcCC--CCCCCcC---CcccHHHHHHHHH
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSIQD--GLSETEA---STTDFVALISVLH 90 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~ 90 (461)
++++...- -.-++.+|+.|.+.|+++. .+.. ....+ +..|+.+..+.+ ++|+... .+..+.-.-..+.
T Consensus 6 ~aLISVsD----K~~iv~lAk~L~~lGfeI~-AT~G-Tak~L-~e~GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa 78 (513)
T PRK00881 6 RALISVSD----KTGIVEFAKALVELGVEIL-STGG-TAKLL-AEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILA 78 (513)
T ss_pred EEEEEEeC----cccHHHHHHHHHHCCCEEE-Ecch-HHHHH-HHCCCeeEEeecccCCchhcCCccccCCchhhhhhcc
Confidence 55554432 4457899999999999995 3432 22221 225677776653 5555442 2222221111111
Q ss_pred HHcchhHHHHHHHHhhcccccCCCCccEEEeCCC
Q 012543 91 VKCAAPFQDCLAKLLSNAEEKEEEPIACLITDAS 124 (461)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~ 124 (461)
+ ....+..+++.+..- ...|+||++..
T Consensus 79 ~---r~~~~h~~~l~~~~i----~~IDlVvvNLY 105 (513)
T PRK00881 79 R---RDNPEHVAALEEHGI----EPIDLVVVNLY 105 (513)
T ss_pred C---CCCHHHHHHHHHcCC----CceeEEEEeCc
Confidence 1 111233344443322 66899999854
No 432
>PLN02293 adenine phosphoribosyltransferase
Probab=25.10 E-value=2.1e+02 Score=24.80 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=22.6
Q ss_pred CCccEEEeCC--CchhhHHHHHHcCCCeEEE
Q 012543 114 EPIACLITDA--SWFFTHDVAESLKLPRIVL 142 (461)
Q Consensus 114 ~~pDlvi~D~--~~~~a~~~A~~lgiP~v~~ 142 (461)
.++|+|++=. ....|..+|..+|+|++.+
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 5689988654 3367888999999998875
No 433
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=24.90 E-value=2.3e+02 Score=19.92 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 413 AIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 413 ~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
.|.++++| +.+.+.|.+ +..+ +.|-..+-++++.++|-.
T Consensus 39 LitRLmnn---eeIsEeaQ~--EMA~----eAgi~~~rID~IA~fLNq 77 (81)
T PF10820_consen 39 LITRLMNN---EEISEEAQQ--EMAS----EAGIDEQRIDDIANFLNQ 77 (81)
T ss_pred HHHHHhcc---HhhhHHHHH--HHHH----HcCCcHHHHHHHHHHHHH
Confidence 36678888 555555443 2222 668889999999998753
No 434
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.72 E-value=83 Score=26.65 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEc
Q 012543 23 PFQGHINPMLQLANILYSKGFSITIIHTKFNSPNPSNYPHFTFCSI 68 (461)
Q Consensus 23 ~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~ 68 (461)
|+.|++-- .++++|.++||+|+.++........ ..+++.+..
T Consensus 5 GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~ 46 (183)
T PF13460_consen 5 GATGFVGR--ALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQG 46 (183)
T ss_dssp TTTSHHHH--HHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEES
T ss_pred CCCChHHH--HHHHHHHHCCCEEEEEecCchhccc--cccccccee
Confidence 56666653 5899999999999999975221111 357777764
No 435
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=24.70 E-value=1.2e+02 Score=28.57 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+.++|++ + |+.|++-. .|++.|.++||+|+.++..
T Consensus 3 ~~~~ilV-t-GatGfIG~--~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 3 EGKVVCV-T-GASGYIAS--WLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CCCEEEE-E-CChHHHHH--HHHHHHHHCCCEEEEEEcC
Confidence 3455544 3 55676664 4689999999999887653
No 436
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.60 E-value=1.5e+02 Score=23.89 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=27.8
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 17 LILFPLP-FQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 17 il~~~~~-~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++++.+| ..-.+.-.+=+...|..+|++|++++++
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCH
Confidence 3445555 5567777888899999999999999986
No 437
>PRK06526 transposase; Provisional
Probab=24.58 E-value=81 Score=28.90 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.+..++++..++.|-..=+.+|+.++..+|+.|.|.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 34578888888999988899999999999999887433
No 438
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=24.53 E-value=4.6e+02 Score=22.58 Aligned_cols=101 Identities=7% Similarity=-0.036 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC---CC---CCCCCCCceEEEcCCCCCCCcCCcccHHHHH
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKFN---SP---NPSNYPHFTFCSIQDGLSETEASTTDFVALI 86 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
++--|-+++..+.|-....+.+|-+-+-+|.+|.++--=.. .. .....+++++.....++.-.. .+..+
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~---~~~~~-- 94 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDT---PHLDE-- 94 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeC---CCcCH--
Confidence 35577888888999988877777666667778887643211 10 012235788887764322111 11110
Q ss_pred HHHHHHcchhHHHHHHHHhhcccccCCCCccEEEeCCCch
Q 012543 87 SVLHVKCAAPFQDCLAKLLSNAEEKEEEPIACLITDASWF 126 (461)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~ 126 (461)
.....+...+....+.+.+ .++|+||.|....
T Consensus 95 -~~~~~~~~~~~~a~~~l~~-------~~~dlvVLDEi~~ 126 (178)
T PRK07414 95 -SEKKALQELWQYTQAVVDE-------GRYSLVVLDELSL 126 (178)
T ss_pred -HHHHHHHHHHHHHHHHHhC-------CCCCEEEEehhHH
Confidence 0112222222233233333 6799999997654
No 439
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=24.50 E-value=1.3e+02 Score=29.62 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=29.4
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.|.+... |+-|-..-.+.||..|+.+|++|.++=.+
T Consensus 106 vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 106 VIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred EEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3444433 79999999999999999999999998664
No 440
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=24.48 E-value=1.2e+02 Score=26.21 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=21.4
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|||.++ +.||+- +.+|-.|+++||+|+.+-..
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCC
Confidence 567776 445553 67788899999999998764
No 441
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=24.45 E-value=5.7e+02 Score=26.76 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=28.3
Q ss_pred cccCchHHHHHhhcCC--cc--ccCcc-cchhhhhHHHHHHhhhceeecCCccCHHHHHHHHHHHh
Q 012543 358 THCGWNSTLESMCEGV--PM--ICQPC-HGEQMVIARYVSDVWKVGLHLERKLERGEVERAIRRVM 418 (461)
Q Consensus 358 ~HGG~gs~~eal~~Gv--P~--l~~P~-~~DQ~~na~~v~~~lG~G~~l~~~~~~~~l~~~i~~ll 418 (461)
.+||+|+........- |+ +.+|- +.+. .....+.++ . .++++.|.+.|++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~-g~~~~l~~~--~------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDR-VPVEELYKR--N------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCC-CCHHHHHHH--H------CcCHHHHHHHHHHHh
Confidence 5799998766655433 33 34433 2222 222222221 2 368888888887765
No 442
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=24.41 E-value=89 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=26.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|||+|+..|.-| ..+|..|.++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 589999877766 45788899999999998763
No 443
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=24.17 E-value=2.3e+02 Score=26.01 Aligned_cols=43 Identities=21% Similarity=0.040 Sum_probs=35.6
Q ss_pred cCCCCeEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012543 11 QKKGRRLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTKFN 53 (461)
Q Consensus 11 ~~~~~~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~~~ 53 (461)
+++.+|-.|+.. |+-|-..-.-.||-.|+.-+|.|.+++++..
T Consensus 15 ~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA 58 (323)
T KOG2825|consen 15 EQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA 58 (323)
T ss_pred hcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc
Confidence 455667777665 7889999999999999999999999999743
No 444
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.10 E-value=32 Score=31.92 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=30.6
Q ss_pred ccCchHH--HHHhhcCCccccCcccchhhhhHHH-HHHhhhce
Q 012543 359 HCGWNST--LESMCEGVPMICQPCHGEQMVIARY-VSDVWKVG 398 (461)
Q Consensus 359 HGG~gs~--~eal~~GvP~l~~P~~~DQ~~na~~-v~~~lG~G 398 (461)
-||||++ ..|-.+||-++.+-+...|..+++. +.. .|+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~-~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA-RGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH-cCCC
Confidence 3566654 5566679999999999999999955 666 4887
No 445
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.01 E-value=1.8e+02 Score=26.71 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeecChhhhhcCCCCCccccccCch-----H
Q 012543 290 TKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWAPQQEVLAHPATGAFWTHCGWN-----S 364 (461)
Q Consensus 290 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~g-----s 364 (461)
.....+.+-|...|..+-++..-+.. .+.+-+.+ ...+.++|+ +|+-||.| -
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~-----~~~I~~~l----------------~~a~~r~D~--vI~tGGLGPT~DDi 77 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDN-----PDRIVEAL----------------REASERADV--VITTGGLGPTHDDL 77 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCC-----HHHHHHHH----------------HHHHhCCCE--EEECCCcCCCccHh
Confidence 33556777888888876555433210 12232333 334556788 99999999 4
Q ss_pred HHHHh--hcCCccccCccc
Q 012543 365 TLESM--CEGVPMICQPCH 381 (461)
Q Consensus 365 ~~eal--~~GvP~l~~P~~ 381 (461)
|.|++ +.|+|++.-|-+
T Consensus 78 T~e~vAka~g~~lv~~~~a 96 (255)
T COG1058 78 TAEAVAKALGRPLVLDEEA 96 (255)
T ss_pred HHHHHHHHhCCCcccCHHH
Confidence 55655 479998887653
No 446
>PRK09134 short chain dehydrogenase; Provisional
Probab=23.97 E-value=1.5e+02 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=23.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.+.++++ |+.|.+- ..+++.|.++|++|..+..
T Consensus 9 ~k~vlIt-Gas~giG--~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 9 PRAALVT-GAARRIG--RAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CCEEEEe-CCCcHHH--HHHHHHHHHCCCEEEEEeC
Confidence 3455555 4555554 4788999999999987654
No 447
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.93 E-value=1.6e+02 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 14 GRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 14 ~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.++++++ |+.|.+- ..+|+.|.++||+|+.+..
T Consensus 6 ~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEcC
Confidence 3455443 4445554 5889999999999988653
No 448
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=23.88 E-value=60 Score=25.28 Aligned_cols=40 Identities=13% Similarity=-0.046 Sum_probs=28.1
Q ss_pred hhhhcCCCCCcccccc---CchHHHHHh---hcCCccccCcccchh
Q 012543 345 QEVLAHPATGAFWTHC---GWNSTLESM---CEGVPMICQPCHGEQ 384 (461)
Q Consensus 345 ~~lL~~~~~~~~I~HG---G~gs~~eal---~~GvP~l~~P~~~DQ 384 (461)
...+..|++-+++-.| +.||..|.- +.|+|++++-....+
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 4467788885555666 899999974 469999988654433
No 449
>PLN00016 RNA-binding protein; Provisional
Probab=23.77 E-value=98 Score=30.16 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=24.7
Q ss_pred CeEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFP--LPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~--~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++|+++. .|+.|.+- ..|++.|.++||+|+.++..
T Consensus 53 ~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 5777761 24445554 45778999999999998864
No 450
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=23.76 E-value=1.1e+02 Score=26.88 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITII 48 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~ 48 (461)
+.+++++..+|.-| ..+|+.|.+.||+|++.
T Consensus 27 ~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 27 EGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 35788888876444 57899999999999954
No 451
>COG2733 Predicted membrane protein [Function unknown]
Probab=23.52 E-value=2e+02 Score=28.03 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=27.5
Q ss_pred cCchHHHHHhh-------------cCCcc-ccCcccchhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHH
Q 012543 360 CGWNSTLESMC-------------EGVPM-ICQPCHGEQMVIARYVSDVWKVGLHLER-KLERGEVERAIR 415 (461)
Q Consensus 360 GG~gs~~eal~-------------~GvP~-l~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~ 415 (461)
|+.++++||.. +.+|+ |.+|+..==|.|=.++-+ ++|..+.. -++++.|.++++
T Consensus 38 g~v~a~aEAAmVGgLADWFAVtALFr~PlgipipHTAIIprNKdri~e--~l~~FV~~~fLs~e~i~~Kl~ 106 (415)
T COG2733 38 GFVGAIAEAAMVGGLADWFAVTALFRHPLGIPIPHTAIIPRNKDRIGE--NLGQFVQNNFLSPESINEKLR 106 (415)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhccccHHHHHH--HHHHHHHHcccChHHHHHHHH
Confidence 45666666632 33666 555655444555555554 44444433 345554444443
No 452
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=23.52 E-value=4.1e+02 Score=24.77 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=20.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 23 PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 23 ~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+.|-+- .+|..+|...||+|++++-.
T Consensus 5 GgTGlIG--~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 5 GGTGLIG--RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred ccccchh--HHHHHHHHhCCCeEEEEEcC
Confidence 4455443 36788898999999999875
No 453
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.43 E-value=1.7e+02 Score=26.94 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.0
Q ss_pred CeEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPL--PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~--~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.+++.++. |+-|-..-.+.||..|++.|++|.++-..
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 34444333 57788888889999999999999988654
No 454
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.42 E-value=94 Score=19.72 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 012543 406 ERGEVERAIRRVMVDAEGREMRNRAAILK 434 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 434 (461)
+.++|..||..+.++. -++++.|++..
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5788999999998762 46777776653
No 455
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=23.39 E-value=5.8e+02 Score=25.82 Aligned_cols=33 Identities=6% Similarity=0.084 Sum_probs=25.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
+||+++..|.. .+.+++++++.|++++.+.+..
T Consensus 3 ~kvLi~~~gei-----a~~ii~a~~~~Gi~~v~v~~~~ 35 (472)
T PRK07178 3 KKILIANRGEI-----AVRIVRACAEMGIRSVAIYSEA 35 (472)
T ss_pred cEEEEECCcHH-----HHHHHHHHHHcCCeEEEEeCCC
Confidence 38888855433 5789999999999999888763
No 456
>PRK09213 pur operon repressor; Provisional
Probab=23.28 E-value=1.6e+02 Score=27.34 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCccEEEeCCC--chhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDAS--WFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~~--~~~a~~~A~~lgiP~v~~~ 143 (461)
.++|+|++=.. .+.|..+|..+|+|++.+.
T Consensus 129 ~~iD~Vvtvet~GIplA~~vA~~L~vp~vivR 160 (271)
T PRK09213 129 KKIDAVMTVETKGIPLAYAVANYLNVPFVIVR 160 (271)
T ss_pred cCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 57999997643 3778889999999999975
No 457
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.23 E-value=2.1e+02 Score=24.03 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=24.9
Q ss_pred CCccEEEeCCCc----------hhhHHHHHHcCCCeEEEecc
Q 012543 114 EPIACLITDASW----------FFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 114 ~~pDlvi~D~~~----------~~a~~~A~~lgiP~v~~~~~ 145 (461)
+.||+|++..-+ --+..+|+++|+|+.-.+..
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 789999987543 23677999999999987654
No 458
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.17 E-value=1.1e+02 Score=30.56 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=22.5
Q ss_pred CCccEEEeCCCchhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDASWFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~ 143 (461)
.+||++|.... ...+|+++|||++.+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 68999998864 5668999999998764
No 459
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.15 E-value=1.4e+02 Score=27.18 Aligned_cols=36 Identities=14% Similarity=0.006 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 17 LILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 17 il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
+++..-|+.|...-...+|..++++|++|.++..+.
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 455566899999999999999999999999998864
No 460
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=23.12 E-value=2.5e+02 Score=22.65 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 405 LERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 405 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
.+.+.+.+-++.++++ +..+....+.+.+. .|-...+.+++++++++.
T Consensus 13 v~~~~i~~l~~ai~~~----d~~~~l~~~~~l~~----~G~d~~~~l~~L~~~~R~ 60 (143)
T PF12169_consen 13 VDEEQIFELLDAILEG----DAAEALELLNELLE----QGKDPKQFLDDLIEYLRD 60 (143)
T ss_dssp TSTHHHHHHHHHHHTT-----HHHHHHHHHHHHH----CT--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC----CHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHH
Confidence 4667777777777776 45666666666666 888889999999988875
No 461
>PRK03094 hypothetical protein; Provisional
Probab=23.06 E-value=76 Score=23.16 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 012543 31 MLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 31 ~l~La~~L~~rGh~V~~~~~ 50 (461)
+-.|.+.|+++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999986654
No 462
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.06 E-value=1.9e+02 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012543 428 NRAAILKEKLDLCTKQGSSSYQSLENLISYIL 459 (461)
Q Consensus 428 ~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~ 459 (461)
+.++++.+.|. +|=|+-.+|......|+
T Consensus 15 ~AVE~Iq~lMa----eGmSsGEAIa~VA~elR 42 (60)
T COG3140 15 KAVERIQELMA----EGMSSGEAIALVAQELR 42 (60)
T ss_pred HHHHHHHHHHH----ccccchhHHHHHHHHHH
Confidence 34444444444 44455555544444443
No 463
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=23.04 E-value=1.4e+02 Score=27.29 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=31.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|.|+.=|+-|-.--...||..|+++|++|.++=.+
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 677776689999999999999999999999998664
No 464
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.92 E-value=1.7e+02 Score=29.30 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++..|+|+..++.|-..-+..||..|.++|++|.+++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 355778888889999999999999999999999999885
No 465
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=22.84 E-value=1.5e+02 Score=27.47 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=32.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|+|+.=|+-|-..-.+.||..|+++|++|.++--+
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 788886689999999999999999999999998664
No 466
>CHL00194 ycf39 Ycf39; Provisional
Probab=22.78 E-value=1.4e+02 Score=28.28 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=23.5
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+|+++ |+.|.+- ..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 355554 5666554 35788899999999998753
No 467
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.75 E-value=1.2e+02 Score=21.72 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 012543 30 PMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 30 p~l~La~~L~~rGh~V~~~~~~ 51 (461)
--+.+|..|+++|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4578999999999999998885
No 468
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=22.73 E-value=1.1e+02 Score=25.05 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC-CCeEEE
Q 012543 18 ILFPLPFQGHINPMLQLANILYSK-GFSITI 47 (461)
Q Consensus 18 l~~~~~~~GHi~p~l~La~~L~~r-Gh~V~~ 47 (461)
+.++.-+..|....++||..|.+. |.+|.+
T Consensus 5 I~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 5 ISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 446667889999999999999999 999996
No 469
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=22.71 E-value=1.5e+02 Score=27.31 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 12 KKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 12 ~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++..+|.+...|+-|--.-.-+|++.|.++||+|-++.-+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 3567889999999999999999999999999999998765
No 470
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=22.64 E-value=1.6e+02 Score=26.60 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=30.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.|.++...+.|-..-+..|++.|.++|++|.++-+
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 45666667899999999999999999999999854
No 471
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=22.58 E-value=1.8e+02 Score=24.53 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=32.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.+.|+.+...|-.-=+-+|++.|+++|+.|..+=+.
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred EEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 677888889999999999999999999999998664
No 472
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=22.57 E-value=2.1e+02 Score=27.95 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=27.6
Q ss_pred ccccccCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 6 ESHMQQKKGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 6 ~~~m~~~~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+|++.. ++++|+++..+. ....+++++++.|++|.++...
T Consensus 5 ~~~~~~-~~~~ilIiG~g~-----~~~~~~~a~~~~G~~v~~~~~~ 44 (395)
T PRK09288 5 GTPLSP-SATRVMLLGSGE-----LGKEVAIEAQRLGVEVIAVDRY 44 (395)
T ss_pred cCCCCC-CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEeCC
Confidence 355554 567888885442 3445677788899999988764
No 473
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.52 E-value=1.7e+02 Score=27.12 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCccEEEeCCC--chhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDAS--WFFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~~--~~~a~~~A~~lgiP~v~~~ 143 (461)
.++|+|++=.. .+.|..+|..+|+|++.+.
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 57999997643 3778889999999999975
No 474
>PRK12377 putative replication protein; Provisional
Probab=22.51 E-value=1.4e+02 Score=27.18 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=27.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.++|...++.|-..=+.+++++|.+.|+.|.|++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 56777777888888888888888888888877655
No 475
>PHA02518 ParA-like protein; Provisional
Probab=22.50 E-value=1.7e+02 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=30.1
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.|.|... |+-|-..-...||..|+++|++|.++-.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4555444 78999999999999999999999998775
No 476
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.47 E-value=3.6e+02 Score=22.82 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=50.2
Q ss_pred hHHHHHhhcCCccccCccc-chhhhhHHHHHHhhhceeecCC-ccCHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 012543 363 NSTLESMCEGVPMICQPCH-GEQMVIARYVSDVWKVGLHLER-KLERGEVERAIRRVMVDAEGREMRNRAAILKEKLD 438 (461)
Q Consensus 363 gs~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~lG~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 438 (461)
-|+.|.-.+|.=.+.=--+ -=+..|+++.++ .|.=-.+-- ..+.++|.++..+=|.|++...+++.+.++....+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4666777777655321111 114679999998 787655443 57899999998888877555678888877766544
No 477
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.41 E-value=1.6e+02 Score=23.62 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=26.1
Q ss_pred CeEEEEEccccccCCHHHHHHHHHHHHhC--CCceEEEEC
Q 012543 274 KSVIYVSFGSIAAIDETKFLEVAWGLANS--KVPFLWVVR 311 (461)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~ 311 (461)
+.++++++||........+..+.+.+++. ++.+-|.+.
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 46899999998874555677777777542 345555554
No 478
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=22.40 E-value=1.4e+02 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=21.3
Q ss_pred CCccEEEeCC--Cc-hhhHHHHHHcCCCeEEEe
Q 012543 114 EPIACLITDA--SW-FFTHDVAESLKLPRIVLR 143 (461)
Q Consensus 114 ~~pDlvi~D~--~~-~~a~~~A~~lgiP~v~~~ 143 (461)
.+||+||+-. .. .+++.+|..++||++-+.
T Consensus 66 ~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hie 98 (346)
T PF02350_consen 66 EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIE 98 (346)
T ss_dssp HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES
T ss_pred cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEec
Confidence 6799988653 33 667889999999988764
No 479
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=22.30 E-value=1.5e+02 Score=29.36 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=29.7
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.|.|... |+-|-..-.+.||..|+.+|++|.++=.+
T Consensus 123 vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 123 VIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 3444444 89999999999999999999999988654
No 480
>PRK07952 DNA replication protein DnaC; Validated
Probab=22.28 E-value=1.6e+02 Score=26.88 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=29.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
-+++...++.|-..-+.++|.+|..+|+.|.|++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 56777778999999999999999999999988743
No 481
>PHA02857 monoglyceride lipase; Provisional
Probab=22.07 E-value=1.4e+02 Score=27.20 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=30.2
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.-++++.+|..+|..-...+++.|.++|+.|..+-.
T Consensus 25 ~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~ 60 (276)
T PHA02857 25 KALVFISHGAGEHSGRYEELAENISSLGILVFSHDH 60 (276)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccC
Confidence 467777778888899999999999999999987644
No 482
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=22.04 E-value=1.2e+02 Score=30.01 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=24.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
|+|.|+..|-.| .++|..|+++||+|+.+...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 467787666555 67889999999999987653
No 483
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=21.96 E-value=3.2e+02 Score=19.86 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 012543 406 ERGEVERAIRRVMVDAEGREMRNRAAILKEKLDLCTKQGSSSYQSLENLISYILS 460 (461)
Q Consensus 406 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~l~~ 460 (461)
.++.+.+-++.++++ ++.+..+.+.+.+. +|-+...-+..+.+.+.+
T Consensus 4 ~~~~i~~i~~~~~~~----~~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~ 50 (89)
T PF08542_consen 4 PPEVIEEILESCLNG----DFKEARKKLYELLV----EGYSASDILKQLHEVLVE 50 (89)
T ss_dssp -HHHHHHHHHHHHHT----CHHHHHHHHHHHHH----TT--HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhC----CHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHH
Confidence 456666666666555 56666666666666 666777777777776643
No 484
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=21.95 E-value=1.7e+02 Score=27.52 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=31.4
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
++|.|..-|+-|-..-...||-.|+++|++|.++-.+
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 3666666678899999999999999999999998664
No 485
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=21.95 E-value=1.6e+02 Score=26.61 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 13 KGRRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 13 ~~~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
..++|+++...---=..-+-.....|.++||+|++++--
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 456776655443334455666777889999999998753
No 486
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=21.94 E-value=82 Score=23.04 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012543 31 MLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 31 ~l~La~~L~~rGh~V~~~~~~ 51 (461)
+-.+.+.|+++||+|+=+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 346889999999999987764
No 487
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=21.89 E-value=1.6e+02 Score=26.37 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=29.1
Q ss_pred eEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILF-PLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~-~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.|.++ .-|+-|=..-.+.||..|+++|++|.++-.+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34444 4478899999999999999999999998654
No 488
>PHA02754 hypothetical protein; Provisional
Probab=21.88 E-value=1.7e+02 Score=19.71 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=18.3
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHH
Q 012543 413 AIRRVMVDAEGREMRNRAAILKEKLD 438 (461)
Q Consensus 413 ~i~~ll~~~~~~~~~~~a~~l~~~~~ 438 (461)
.|.+++.+ ..|++..+++++.+.
T Consensus 6 Ei~k~i~e---K~Fke~MRelkD~LS 28 (67)
T PHA02754 6 EIPKAIME---KDFKEAMRELKDILS 28 (67)
T ss_pred HHHHHHHH---hHHHHHHHHHHHHHh
Confidence 45556667 789999999999987
No 489
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=21.86 E-value=79 Score=27.00 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=54.7
Q ss_pred cCHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCceEEEcCCC-------------CCCCc------CCcccHHHH
Q 012543 26 GHINPMLQLANIL-YSKGFSITIIHTKFNSPNPSNYPHFTFCSIQDG-------------LSETE------ASTTDFVAL 85 (461)
Q Consensus 26 GHi~p~l~La~~L-~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~------~~~~~~~~~ 85 (461)
+.+.-.+..|++| .+.|.+|.+.-.. ....+.+..++..+.++-. ..... ....+...+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~ 95 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESI 95 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHH
Confidence 5677888999999 7889999986653 2222222224555555410 00000 011122222
Q ss_pred HHHHHHH-------cchhHHHHHHHHhhcccccCCCCccEEEeCCCchhhHHHHHHcCCCeEEEecc
Q 012543 86 ISVLHVK-------CAAPFQDCLAKLLSNAEEKEEEPIACLITDASWFFTHDVAESLKLPRIVLRSL 145 (461)
Q Consensus 86 ~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~pDlvi~D~~~~~a~~~A~~lgiP~v~~~~~ 145 (461)
...+... ....+...++++.+ .+.|+||.+.. +..+|+++|+|++.+.++
T Consensus 96 ~~ll~~~i~~~~~~~~~e~~~~i~~~~~-------~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 96 EELLGVDIKIYPYDSEEEIEAAIKQAKA-------EGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHT-EEEEEEESSHHHHHHHHHHHHH-------TT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred HHHhCCceEEEEECCHHHHHHHHHHHHH-------cCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 2222111 12233445555555 77999999953 468899999999997765
No 490
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=21.85 E-value=1.8e+02 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=34.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTKF 52 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~~ 52 (461)
.-+++...|+.|...-.++++.+.+++|..|.|++...
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 45677778999999999999999999999999999863
No 491
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=21.84 E-value=4.7e+02 Score=24.90 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=36.2
Q ss_pred cccccccCCC-CeEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 5 GESHMQQKKG-RRLILFPL-PFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 5 ~~~~m~~~~~-~~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
..|.|+.+.+ .+|+++.. -.-|-..-.+.|.++|.++|.++.|+.+.
T Consensus 138 ~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTg 186 (339)
T COG3367 138 LCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATG 186 (339)
T ss_pred hccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecC
Confidence 3466777744 34444433 36799999999999999999999999985
No 492
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=21.80 E-value=7.5e+02 Score=24.60 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=24.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
+||+++-.+.. .+.+++++++.|++|.++.+.
T Consensus 3 ~~ililg~g~~-----~~~~~~~a~~lG~~~v~~~~~ 34 (450)
T PRK06111 3 QKVLIANRGEI-----AVRIIRTCQKLGIRTVAIYSE 34 (450)
T ss_pred ceEEEECCcHH-----HHHHHHHHHHcCCeEEEEech
Confidence 37888875544 377888888999999998764
No 493
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=21.76 E-value=3.8e+02 Score=26.79 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=24.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 15 RRLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 15 ~~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
|||+++..|+..| +|+++|++.|++|.++..
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 6999988887766 688899888988887744
No 494
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=21.70 E-value=1.1e+02 Score=26.22 Aligned_cols=101 Identities=15% Similarity=0.001 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECCCccCCchhcccCchhHHHHhcCCCceeeec
Q 012543 263 ICISRLDKQAPKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRPGLVRGAEWIELLPRGFLEMLDGRGHIVKWA 342 (461)
Q Consensus 263 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~v 342 (461)
++-++|.+ +...+|+-|. ..-....+.++....+-.++=+........+.....+...+ .+...-
T Consensus 23 ~lG~~la~---~g~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i--------~~~~~~ 87 (178)
T TIGR00730 23 ELGAYLAG---QGWGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELI--------EVNGMH 87 (178)
T ss_pred HHHHHHHH---CCCEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceE--------EECCHH
Q ss_pred ChhhhhcCCCCCccccccCchHHHHHhhc---------CCccccC
Q 012543 343 PQQEVLAHPATGAFWTHCGWNSTLESMCE---------GVPMICQ 378 (461)
Q Consensus 343 p~~~lL~~~~~~~~I~HGG~gs~~eal~~---------GvP~l~~ 378 (461)
....+|-..+-..++--||.||+-|.+.. .+|++++
T Consensus 88 ~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~ 132 (178)
T TIGR00730 88 ERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILF 132 (178)
T ss_pred HHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEE
No 495
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=21.68 E-value=1.6e+02 Score=29.02 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=28.9
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012543 16 RLILFPL-PFQGHINPMLQLANILYSKGFSITIIH 49 (461)
Q Consensus 16 ~il~~~~-~~~GHi~p~l~La~~L~~rGh~V~~~~ 49 (461)
.|.|... |+-|-..-.+.||..|+.+|++|.++=
T Consensus 108 vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 108 VLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4445544 799999999999999999999999986
No 496
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=21.63 E-value=1.6e+02 Score=27.10 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=30.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHTK 51 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~~ 51 (461)
.|.+..=|+-|-..-.+.||..|+++|++|.++=.+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 555554589999999999999999999999988544
No 497
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=21.59 E-value=1.9e+02 Score=23.68 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCeEEEEEccccccCCHHHHHHHHHHHHhCCCceEEEECC
Q 012543 273 PKSVIYVSFGSIAAIDETKFLEVAWGLANSKVPFLWVVRP 312 (461)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 312 (461)
...+|++++||-.....+.++.+++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4578999999988877788888888874 35677666544
No 498
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.35 E-value=3.6e+02 Score=20.20 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcC
Q 012543 435 EKLDLCTKQGSSSYQSLENLISYILSY 461 (461)
Q Consensus 435 ~~~~~~~~~~g~~~~~~~~l~~~l~~~ 461 (461)
+-+..+..++++ +..++++++.+++|
T Consensus 63 ~cv~~a~~~~~~-~~~i~el~~~~~~~ 88 (89)
T COG1937 63 ECVKRAVEDGDE-EESIDELIKALRRY 88 (89)
T ss_pred HHHHHHhhccch-HhHHHHHHHHHHhh
Confidence 334334434444 89999999988765
No 499
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=21.32 E-value=1.7e+02 Score=23.92 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=28.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
.|.++.+...|-..-+..|+++|.++|++|.++-.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 67788888999999999999999999999996655
No 500
>PRK06180 short chain dehydrogenase; Provisional
Probab=21.25 E-value=1.5e+02 Score=27.22 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=22.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012543 16 RLILFPLPFQGHINPMLQLANILYSKGFSITIIHT 50 (461)
Q Consensus 16 ~il~~~~~~~GHi~p~l~La~~L~~rGh~V~~~~~ 50 (461)
+.++++ |+.|.+ -..+++.|.++||+|+.+..
T Consensus 5 ~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeC
Confidence 445555 455554 46778899999999998775
Done!