Query 012545
Match_columns 461
No_of_seqs 294 out of 2976
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 1.3E-53 2.9E-58 425.1 50.0 392 4-455 2-395 (396)
2 KOG1336 Monodehydroascorbate/f 100.0 4.4E-53 9.6E-58 402.6 34.9 402 5-461 74-476 (478)
3 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1E-51 2.2E-56 408.0 32.9 397 2-459 1-448 (454)
4 PRK13512 coenzyme A disulfide 100.0 3.3E-49 7.2E-54 397.8 42.9 398 7-458 3-424 (438)
5 PRK09564 coenzyme A disulfide 100.0 1.4E-48 2.9E-53 395.8 44.8 405 7-459 2-431 (444)
6 PRK14989 nitrite reductase sub 100.0 2.3E-47 5.1E-52 406.2 48.3 389 5-453 3-403 (847)
7 PRK06370 mercuric reductase; V 100.0 5E-49 1.1E-53 400.1 33.5 399 1-459 1-447 (463)
8 PRK05249 soluble pyridine nucl 100.0 1.4E-48 3E-53 397.3 32.6 399 1-459 1-447 (461)
9 PLN02507 glutathione reductase 100.0 5.4E-48 1.2E-52 393.3 36.8 394 5-459 25-477 (499)
10 PRK06116 glutathione reductase 100.0 2.9E-48 6.3E-53 393.3 34.2 396 2-459 1-444 (450)
11 TIGR01424 gluta_reduc_2 glutat 100.0 4.4E-48 9.4E-53 390.9 35.3 393 5-459 2-440 (446)
12 TIGR01421 gluta_reduc_1 glutat 100.0 5.9E-48 1.3E-52 389.5 35.5 395 4-460 1-445 (450)
13 TIGR02374 nitri_red_nirB nitri 100.0 2.5E-46 5.4E-51 399.2 47.8 382 8-450 1-388 (785)
14 PRK06467 dihydrolipoamide dehy 100.0 9.2E-48 2E-52 390.2 31.9 395 2-459 1-449 (471)
15 PRK04965 NADH:flavorubredoxin 100.0 7.1E-46 1.5E-50 367.5 43.4 363 6-430 3-367 (377)
16 PLN02546 glutathione reductase 100.0 4.8E-47 1E-51 387.8 33.2 392 5-459 79-526 (558)
17 PRK14694 putative mercuric red 100.0 1.2E-46 2.7E-51 382.6 35.7 397 1-459 1-447 (468)
18 PRK08010 pyridine nucleotide-d 100.0 6.1E-47 1.3E-51 382.7 32.9 396 4-459 2-431 (441)
19 PRK07845 flavoprotein disulfid 100.0 1.3E-46 2.8E-51 381.7 34.6 395 6-459 2-450 (466)
20 PTZ00058 glutathione reductase 100.0 4E-46 8.6E-51 380.8 37.1 403 4-459 47-551 (561)
21 PRK06416 dihydrolipoamide dehy 100.0 2.1E-46 4.5E-51 381.3 34.9 396 4-459 3-446 (462)
22 PRK07846 mycothione reductase; 100.0 2.6E-46 5.7E-51 377.3 34.5 392 5-459 1-440 (451)
23 TIGR01423 trypano_reduc trypan 100.0 1.3E-46 2.9E-51 380.7 32.2 395 3-459 1-465 (486)
24 PRK05976 dihydrolipoamide dehy 100.0 2.9E-46 6.3E-51 380.5 33.3 401 2-459 1-456 (472)
25 PRK06115 dihydrolipoamide dehy 100.0 5.7E-46 1.2E-50 376.9 34.8 396 5-459 3-450 (466)
26 TIGR02053 MerA mercuric reduct 100.0 2.4E-46 5.2E-51 380.7 31.3 392 6-458 1-441 (463)
27 PRK07818 dihydrolipoamide dehy 100.0 4.7E-46 1E-50 378.4 33.2 396 1-459 1-450 (466)
28 PRK06912 acoL dihydrolipoamide 100.0 1.4E-45 3E-50 373.9 33.0 392 7-459 2-442 (458)
29 PRK07251 pyridine nucleotide-d 100.0 2.7E-45 5.8E-50 370.4 32.4 394 4-459 2-430 (438)
30 PRK13748 putative mercuric red 100.0 8.2E-45 1.8E-49 378.3 36.1 394 4-459 97-540 (561)
31 TIGR01438 TGR thioredoxin and 100.0 5.6E-45 1.2E-49 369.8 34.0 393 5-459 2-462 (484)
32 PRK14727 putative mercuric red 100.0 8.7E-45 1.9E-49 369.6 34.1 393 5-459 16-458 (479)
33 PRK06327 dihydrolipoamide dehy 100.0 8.7E-45 1.9E-49 369.4 33.7 398 2-459 1-459 (475)
34 TIGR03452 mycothione_red mycot 100.0 1.6E-44 3.4E-49 364.8 34.6 393 4-459 1-443 (452)
35 PTZ00153 lipoamide dehydrogena 100.0 1.5E-44 3.3E-49 373.5 34.8 398 5-459 116-644 (659)
36 PRK06292 dihydrolipoamide dehy 100.0 1.1E-44 2.4E-49 368.6 33.0 395 4-459 2-444 (460)
37 COG1251 NirB NAD(P)H-nitrite r 100.0 5.6E-44 1.2E-48 355.0 32.6 384 4-448 2-391 (793)
38 TIGR01350 lipoamide_DH dihydro 100.0 1.1E-43 2.3E-48 361.6 34.2 397 5-459 1-445 (461)
39 PTZ00052 thioredoxin reductase 100.0 1.7E-43 3.8E-48 360.5 33.4 396 2-460 2-473 (499)
40 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.9E-42 6.4E-47 347.5 41.0 390 19-458 1-417 (427)
41 KOG0405 Pyridine nucleotide-di 100.0 2E-42 4.2E-47 314.4 28.3 391 4-453 19-460 (478)
42 KOG1335 Dihydrolipoamide dehyd 100.0 1.2E-42 2.6E-47 319.7 24.9 397 5-458 39-488 (506)
43 COG1252 Ndh NADH dehydrogenase 100.0 6.3E-42 1.4E-46 329.9 29.1 310 5-370 3-341 (405)
44 PTZ00318 NADH dehydrogenase-li 100.0 1.8E-39 4E-44 325.7 30.0 301 4-363 9-350 (424)
45 TIGR03169 Nterm_to_SelD pyridi 100.0 4.8E-38 1E-42 310.6 31.4 305 7-368 1-318 (364)
46 TIGR01292 TRX_reduct thioredox 100.0 1.3E-35 2.9E-40 285.5 28.4 288 6-358 1-298 (300)
47 PRK10262 thioredoxin reductase 100.0 5.4E-36 1.2E-40 290.6 25.6 298 3-360 4-314 (321)
48 KOG4716 Thioredoxin reductase 100.0 5.8E-36 1.3E-40 271.2 21.9 396 4-458 18-481 (503)
49 KOG1346 Programmed cell death 100.0 7.5E-36 1.6E-40 277.1 20.4 405 6-450 179-651 (659)
50 TIGR03140 AhpF alkyl hydropero 100.0 1.5E-35 3.2E-40 304.0 24.6 293 4-360 211-512 (515)
51 TIGR03143 AhpF_homolog putativ 100.0 1.5E-34 3.2E-39 298.8 27.6 293 2-359 1-307 (555)
52 COG0492 TrxB Thioredoxin reduc 100.0 2E-34 4.3E-39 272.2 24.4 290 4-360 2-300 (305)
53 PRK15317 alkyl hydroperoxide r 100.0 2.1E-34 4.5E-39 295.9 25.8 292 5-360 211-511 (517)
54 TIGR01316 gltA glutamate synth 100.0 3.6E-34 7.7E-39 288.9 25.2 286 4-358 132-447 (449)
55 PRK12831 putative oxidoreducta 100.0 1.1E-33 2.5E-38 285.7 26.9 290 4-361 139-461 (464)
56 COG0446 HcaD Uncharacterized N 100.0 1E-30 2.2E-35 262.9 38.6 387 8-447 1-406 (415)
57 PRK12778 putative bifunctional 100.0 3.8E-32 8.3E-37 290.6 25.7 288 4-360 430-749 (752)
58 PRK09853 putative selenate red 100.0 1.4E-31 3.1E-36 283.5 28.6 283 5-360 539-841 (1019)
59 PRK11749 dihydropyrimidine deh 100.0 3.7E-31 7.9E-36 268.4 25.9 287 5-362 140-453 (457)
60 PRK12779 putative bifunctional 100.0 5.9E-31 1.3E-35 283.2 27.0 287 5-360 306-626 (944)
61 PRK12770 putative glutamate sy 100.0 1.3E-30 2.9E-35 255.7 27.1 290 4-360 17-349 (352)
62 KOG2495 NADH-dehydrogenase (ub 100.0 1.7E-30 3.7E-35 243.6 20.0 295 4-357 54-393 (491)
63 PRK12810 gltD glutamate syntha 100.0 5.8E-30 1.3E-34 260.1 24.6 294 5-362 143-466 (471)
64 PRK12775 putative trifunctiona 100.0 4.5E-30 9.9E-35 278.8 24.9 290 5-362 430-756 (1006)
65 TIGR03315 Se_ygfK putative sel 100.0 2.8E-29 6E-34 267.5 25.8 283 5-360 537-839 (1012)
66 TIGR01318 gltD_gamma_fam gluta 100.0 9.1E-29 2E-33 250.5 26.6 286 5-359 141-464 (467)
67 PRK12814 putative NADPH-depend 100.0 4.9E-29 1.1E-33 261.6 25.1 289 5-364 193-504 (652)
68 PRK12769 putative oxidoreducta 100.0 2.1E-28 4.5E-33 258.0 29.0 287 5-360 327-651 (654)
69 PRK13984 putative oxidoreducta 100.0 3E-28 6.5E-33 255.4 27.3 284 4-360 282-601 (604)
70 TIGR01317 GOGAT_sm_gam glutama 100.0 3.8E-28 8.2E-33 246.9 24.5 294 5-362 143-480 (485)
71 PRK12809 putative oxidoreducta 100.0 1.9E-27 4.1E-32 249.7 24.5 288 4-360 309-634 (639)
72 TIGR01372 soxA sarcosine oxida 100.0 1.6E-26 3.5E-31 252.7 30.4 281 5-360 163-471 (985)
73 PLN02852 ferredoxin-NADP+ redu 100.0 8.6E-27 1.9E-31 233.4 24.0 293 5-360 26-421 (491)
74 COG3634 AhpF Alkyl hydroperoxi 100.0 3E-28 6.5E-33 222.1 11.5 284 5-358 211-512 (520)
75 KOG0404 Thioredoxin reductase 99.9 5.7E-27 1.2E-31 201.3 16.2 301 2-356 5-314 (322)
76 PRK12771 putative glutamate sy 99.9 1.3E-25 2.9E-30 233.2 25.8 286 5-362 137-445 (564)
77 PLN02172 flavin-containing mon 99.9 7.8E-25 1.7E-29 220.2 23.0 287 4-360 9-352 (461)
78 KOG3851 Sulfide:quinone oxidor 99.9 1.2E-21 2.5E-26 177.3 17.2 307 4-362 38-362 (446)
79 PF00743 FMO-like: Flavin-bind 99.9 1.4E-21 3E-26 199.1 17.1 300 5-360 1-396 (531)
80 COG0493 GltD NADPH-dependent g 99.9 3.9E-21 8.3E-26 190.9 15.1 290 5-357 123-447 (457)
81 KOG2755 Oxidoreductase [Genera 99.9 3.1E-21 6.7E-26 170.1 10.5 267 7-329 1-323 (334)
82 PRK06567 putative bifunctional 99.8 3.4E-19 7.3E-24 187.3 21.4 284 4-358 382-767 (1028)
83 PF07992 Pyr_redox_2: Pyridine 99.8 9.1E-21 2E-25 171.3 2.1 119 7-134 1-130 (201)
84 COG3486 IucD Lysine/ornithine 99.8 4E-17 8.8E-22 153.8 22.7 317 1-360 1-414 (436)
85 KOG0399 Glutamate synthase [Am 99.8 3E-18 6.5E-23 176.0 12.0 287 5-358 1785-2117(2142)
86 PRK05329 anaerobic glycerol-3- 99.7 7E-17 1.5E-21 159.8 19.6 174 178-359 203-419 (422)
87 COG2072 TrkA Predicted flavopr 99.7 2E-17 4.2E-22 166.0 15.1 188 1-225 4-210 (443)
88 PF13738 Pyr_redox_3: Pyridine 99.7 1.1E-17 2.5E-22 151.2 10.1 178 9-225 1-202 (203)
89 PF13434 K_oxygenase: L-lysine 99.7 4E-17 8.6E-22 158.1 13.5 248 5-289 2-340 (341)
90 KOG1399 Flavin-containing mono 99.7 4.2E-16 9E-21 154.3 15.0 241 2-297 3-276 (448)
91 KOG1800 Ferredoxin/adrenodoxin 99.6 2.7E-15 5.8E-20 139.6 14.7 291 4-359 19-405 (468)
92 PTZ00188 adrenodoxin reductase 99.6 1.3E-14 2.8E-19 143.6 18.4 278 5-332 39-420 (506)
93 COG1148 HdrA Heterodisulfide r 99.6 2.3E-14 5E-19 137.3 19.3 128 213-357 400-541 (622)
94 PF00070 Pyr_redox: Pyridine n 99.5 2.8E-13 6.2E-18 102.7 11.0 80 192-274 1-80 (80)
95 TIGR03378 glycerol3P_GlpB glyc 99.4 5.6E-11 1.2E-15 116.6 19.9 154 195-357 229-419 (419)
96 COG2081 Predicted flavoprotein 99.4 1.4E-11 3E-16 117.1 15.1 81 205-288 84-165 (408)
97 COG4529 Uncharacterized protei 99.3 1.9E-09 4.1E-14 105.3 24.4 313 6-357 2-459 (474)
98 COG0029 NadB Aspartate oxidase 99.2 1.5E-10 3.2E-15 112.7 13.2 75 284-360 320-397 (518)
99 COG0579 Predicted dehydrogenas 99.1 1.9E-09 4.1E-14 105.9 17.0 60 231-291 152-212 (429)
100 PF03486 HI0933_like: HI0933-l 99.1 1.9E-10 4.2E-15 113.8 10.0 85 204-290 81-166 (409)
101 PLN02463 lycopene beta cyclase 99.1 1.6E-08 3.4E-13 101.8 21.8 119 5-127 28-170 (447)
102 PRK07804 L-aspartate oxidase; 99.1 1.9E-09 4E-14 111.8 13.8 36 4-42 15-50 (541)
103 COG3075 GlpB Anaerobic glycero 99.1 4.1E-09 8.8E-14 97.1 14.2 151 201-359 229-416 (421)
104 TIGR00551 nadB L-aspartate oxi 99.0 1.4E-09 3.1E-14 111.4 11.7 55 302-359 332-388 (488)
105 PRK08401 L-aspartate oxidase; 99.0 1E-09 2.2E-14 111.8 10.0 54 302-358 309-364 (466)
106 PRK09897 hypothetical protein; 99.0 9E-09 2E-13 105.2 14.8 36 6-42 2-37 (534)
107 PRK08071 L-aspartate oxidase; 99.0 6.7E-09 1.5E-13 106.8 13.8 55 302-359 331-387 (510)
108 PRK12842 putative succinate de 99.0 3.4E-09 7.4E-14 110.8 11.5 103 189-292 156-277 (574)
109 PRK06452 sdhA succinate dehydr 99.0 5.4E-08 1.2E-12 101.4 20.2 39 1-42 1-39 (566)
110 PRK08275 putative oxidoreducta 99.0 1.4E-08 3E-13 105.8 15.7 47 303-358 356-402 (554)
111 PRK06854 adenylylsulfate reduc 99.0 7E-09 1.5E-13 108.8 13.3 35 5-42 11-47 (608)
112 PRK11728 hydroxyglutarate oxid 99.0 2.6E-08 5.6E-13 99.6 16.8 58 231-291 148-205 (393)
113 PRK06069 sdhA succinate dehydr 99.0 7.3E-09 1.6E-13 108.3 13.4 39 1-42 1-42 (577)
114 PF05834 Lycopene_cycl: Lycope 98.9 2E-07 4.3E-12 92.4 22.6 115 7-126 1-142 (374)
115 PRK13800 putative oxidoreducta 98.9 1.1E-08 2.3E-13 112.2 14.6 64 286-358 337-407 (897)
116 PRK09231 fumarate reductase fl 98.9 2.6E-08 5.6E-13 104.1 16.2 72 286-359 339-413 (582)
117 PRK07843 3-ketosteroid-delta-1 98.9 9E-09 2E-13 107.1 12.6 106 189-296 159-276 (557)
118 PRK09077 L-aspartate oxidase; 98.9 2.9E-08 6.2E-13 102.9 16.3 55 302-359 352-408 (536)
119 PF01266 DAO: FAD dependent ox 98.9 4.4E-09 9.6E-14 103.3 9.8 60 231-292 146-205 (358)
120 TIGR01176 fum_red_Fp fumarate 98.9 1.2E-08 2.6E-13 106.3 13.1 56 302-359 356-412 (580)
121 PRK07512 L-aspartate oxidase; 98.9 1E-08 2.3E-13 105.5 11.8 55 302-359 340-396 (513)
122 TIGR01812 sdhA_frdA_Gneg succi 98.9 3.1E-08 6.7E-13 103.7 15.3 56 302-359 341-401 (566)
123 PRK10157 putative oxidoreducta 98.9 8.6E-09 1.9E-13 103.9 10.5 124 1-127 1-165 (428)
124 PRK06847 hypothetical protein; 98.9 1E-08 2.2E-13 101.8 10.7 123 2-127 1-164 (375)
125 PRK10015 oxidoreductase; Provi 98.9 1.3E-08 2.7E-13 102.6 10.8 122 1-126 1-164 (429)
126 PRK08773 2-octaprenyl-3-methyl 98.9 5.1E-08 1.1E-12 97.4 15.0 59 232-292 113-171 (392)
127 COG0644 FixC Dehydrogenases (f 98.8 1.6E-08 3.5E-13 101.0 10.2 119 5-126 3-152 (396)
128 PRK08626 fumarate reductase fl 98.8 5.1E-09 1.1E-13 110.5 6.7 39 1-42 1-39 (657)
129 PLN02815 L-aspartate oxidase 98.8 2.8E-08 6E-13 103.5 11.8 54 302-358 376-431 (594)
130 TIGR01292 TRX_reduct thioredox 98.8 6E-08 1.3E-12 93.1 13.4 101 192-295 2-117 (300)
131 PTZ00363 rab-GDP dissociation 98.8 2.6E-07 5.6E-12 92.7 17.9 63 230-292 230-292 (443)
132 PRK07395 L-aspartate oxidase; 98.8 2.1E-08 4.5E-13 103.9 10.2 53 302-357 346-400 (553)
133 TIGR02061 aprA adenosine phosp 98.8 4.3E-08 9.4E-13 102.2 12.3 33 7-42 1-37 (614)
134 PRK07190 hypothetical protein; 98.8 2.8E-08 6.1E-13 101.6 10.3 124 1-127 1-166 (487)
135 TIGR02032 GG-red-SF geranylger 98.8 4.1E-08 8.8E-13 93.9 10.1 119 6-127 1-149 (295)
136 PRK04176 ribulose-1,5-biphosph 98.7 5.5E-07 1.2E-11 84.0 17.1 174 182-360 17-254 (257)
137 PRK06134 putative FAD-binding 98.7 5.7E-08 1.2E-12 101.6 11.0 101 190-291 161-279 (581)
138 TIGR01373 soxB sarcosine oxida 98.7 9.9E-07 2.1E-11 88.6 19.2 57 232-289 183-239 (407)
139 PRK00711 D-amino acid dehydrog 98.7 5.6E-07 1.2E-11 90.7 17.3 58 231-290 200-257 (416)
140 PRK04176 ribulose-1,5-biphosph 98.7 6E-08 1.3E-12 90.5 9.0 117 5-126 25-173 (257)
141 COG2509 Uncharacterized FAD-de 98.7 2.5E-07 5.5E-12 89.5 13.3 86 208-295 149-235 (486)
142 PRK08274 tricarballylate dehyd 98.7 4.2E-07 9E-12 93.0 15.8 65 231-296 130-199 (466)
143 PRK06184 hypothetical protein; 98.7 9.3E-08 2E-12 98.7 11.0 121 4-127 2-169 (502)
144 PRK07494 2-octaprenyl-6-methox 98.7 8.3E-08 1.8E-12 95.8 10.1 39 1-42 3-41 (388)
145 PRK06834 hypothetical protein; 98.7 1E-07 2.2E-12 97.7 10.9 123 4-129 2-159 (488)
146 PRK07045 putative monooxygenas 98.7 6.1E-08 1.3E-12 96.7 9.1 124 1-127 1-166 (388)
147 TIGR00292 thiazole biosynthesi 98.7 2.9E-06 6.2E-11 79.0 19.3 167 189-359 20-252 (254)
148 COG1053 SdhA Succinate dehydro 98.7 1.1E-07 2.5E-12 97.7 10.8 39 1-42 2-40 (562)
149 TIGR00292 thiazole biosynthesi 98.7 1.6E-07 3.5E-12 87.3 10.5 117 5-126 21-170 (254)
150 TIGR01377 soxA_mon sarcosine o 98.6 8.2E-07 1.8E-11 88.3 16.2 57 231-290 144-200 (380)
151 PRK09126 hypothetical protein; 98.6 9.4E-08 2E-12 95.5 9.4 123 1-128 1-169 (392)
152 PTZ00383 malate:quinone oxidor 98.6 8.5E-07 1.8E-11 90.3 16.3 57 232-290 211-273 (497)
153 PRK08020 ubiF 2-octaprenyl-3-m 98.6 1.7E-07 3.7E-12 93.7 11.0 125 1-128 1-171 (391)
154 PRK12409 D-amino acid dehydrog 98.6 1.5E-06 3.3E-11 87.4 17.8 57 232-290 197-258 (410)
155 TIGR02734 crtI_fam phytoene de 98.6 1.7E-07 3.7E-12 96.9 11.1 58 232-290 219-276 (502)
156 PRK06185 hypothetical protein; 98.6 1.3E-07 2.8E-12 95.1 9.9 39 1-42 1-40 (407)
157 PRK13977 myosin-cross-reactive 98.6 1.9E-06 4.1E-11 87.7 18.0 87 200-290 192-293 (576)
158 PRK07251 pyridine nucleotide-d 98.6 1.2E-07 2.7E-12 96.1 9.6 97 5-127 157-254 (438)
159 TIGR03329 Phn_aa_oxid putative 98.6 8.5E-07 1.8E-11 90.5 15.5 55 231-289 182-236 (460)
160 PRK07333 2-octaprenyl-6-methox 98.6 1.9E-07 4.2E-12 93.7 10.6 122 5-129 1-170 (403)
161 PRK08244 hypothetical protein; 98.6 1.9E-07 4.1E-12 96.2 10.3 120 5-127 2-160 (493)
162 COG1233 Phytoene dehydrogenase 98.6 1.6E-07 3.5E-12 96.1 9.3 57 231-288 223-279 (487)
163 PRK11259 solA N-methyltryptoph 98.6 2.1E-06 4.6E-11 85.3 16.9 57 231-290 148-204 (376)
164 TIGR00275 flavoprotein, HI0933 98.6 8.5E-07 1.8E-11 88.6 14.0 83 204-290 77-160 (400)
165 PRK06481 fumarate reductase fl 98.6 1.6E-06 3.4E-11 89.5 16.2 64 231-295 189-257 (506)
166 PRK07236 hypothetical protein; 98.6 4.6E-07 1E-11 90.3 12.0 120 4-126 5-154 (386)
167 PRK08163 salicylate hydroxylas 98.6 1.6E-07 3.4E-12 94.0 8.7 122 1-126 1-166 (396)
168 PRK08850 2-octaprenyl-6-methox 98.6 2.1E-07 4.6E-12 93.4 9.4 123 1-127 1-169 (405)
169 PRK08013 oxidoreductase; Provi 98.6 2.2E-07 4.7E-12 93.1 9.3 121 5-128 3-170 (400)
170 TIGR03364 HpnW_proposed FAD de 98.6 2.5E-06 5.5E-11 84.4 16.7 53 231-290 144-197 (365)
171 PF13738 Pyr_redox_3: Pyridine 98.6 9.7E-07 2.1E-11 79.5 12.3 100 194-295 1-145 (203)
172 TIGR01350 lipoamide_DH dihydro 98.6 7.5E-07 1.6E-11 91.0 13.0 98 5-128 170-271 (461)
173 PRK05714 2-octaprenyl-3-methyl 98.5 2.7E-07 5.8E-12 92.7 9.4 121 5-128 2-170 (405)
174 PRK15317 alkyl hydroperoxide r 98.5 2.4E-06 5.1E-11 88.5 16.3 101 190-292 211-324 (517)
175 PLN02612 phytoene desaturase 98.5 1.6E-06 3.5E-11 90.4 15.2 57 231-287 307-363 (567)
176 PRK05192 tRNA uridine 5-carbox 98.5 4.8E-07 1E-11 92.9 10.8 119 3-126 2-157 (618)
177 PRK08849 2-octaprenyl-3-methyl 98.5 5.8E-07 1.2E-11 89.6 11.1 121 5-128 3-169 (384)
178 TIGR01790 carotene-cycl lycope 98.5 3.7E-07 8.1E-12 91.1 9.8 116 7-126 1-141 (388)
179 PRK07364 2-octaprenyl-6-methox 98.5 3.6E-07 7.8E-12 92.1 9.6 36 4-42 17-52 (415)
180 TIGR02731 phytoene_desat phyto 98.5 1.4E-06 3.1E-11 88.8 14.1 58 231-288 212-274 (453)
181 TIGR03140 AhpF alkyl hydropero 98.5 2.6E-06 5.6E-11 88.1 16.0 102 189-292 211-325 (515)
182 COG0654 UbiH 2-polyprenyl-6-me 98.5 3.5E-07 7.7E-12 91.1 9.3 120 5-127 2-163 (387)
183 COG0665 DadA Glycine/D-amino a 98.5 3.9E-06 8.4E-11 83.7 16.5 57 231-290 155-212 (387)
184 PRK06126 hypothetical protein; 98.5 6.4E-07 1.4E-11 93.5 11.2 37 3-42 5-41 (545)
185 PRK06175 L-aspartate oxidase; 98.5 2.5E-06 5.3E-11 86.2 14.7 58 231-289 127-188 (433)
186 PRK01747 mnmC bifunctional tRN 98.5 1.5E-06 3.3E-11 92.6 13.8 57 231-290 407-463 (662)
187 KOG2820 FAD-dependent oxidored 98.5 1.5E-06 3.3E-11 80.8 11.8 60 231-290 152-212 (399)
188 PRK07608 ubiquinone biosynthes 98.5 7.6E-07 1.6E-11 88.9 10.7 121 4-128 4-169 (388)
189 PRK07121 hypothetical protein; 98.5 3E-06 6.5E-11 87.2 15.3 65 231-295 176-245 (492)
190 PLN02697 lycopene epsilon cycl 98.5 6.4E-07 1.4E-11 91.8 10.1 116 5-126 108-248 (529)
191 PLN02172 flavin-containing mon 98.5 4.1E-06 8.8E-11 85.0 15.7 135 189-327 9-215 (461)
192 PF13454 NAD_binding_9: FAD-NA 98.5 1.5E-06 3.3E-11 74.8 10.8 34 9-42 1-36 (156)
193 PLN00093 geranylgeranyl diphos 98.5 8E-07 1.7E-11 89.9 10.4 35 4-41 38-72 (450)
194 PRK06183 mhpA 3-(3-hydroxyphen 98.5 8.3E-07 1.8E-11 92.4 10.8 122 4-128 9-176 (538)
195 COG1635 THI4 Ribulose 1,5-bisp 98.5 5.7E-07 1.2E-11 78.7 7.7 35 5-42 30-64 (262)
196 PRK08132 FAD-dependent oxidore 98.5 7.4E-07 1.6E-11 93.0 10.2 36 4-42 22-57 (547)
197 PRK11445 putative oxidoreducta 98.5 9.5E-07 2.1E-11 86.8 10.4 117 6-126 2-157 (351)
198 PRK08205 sdhA succinate dehydr 98.5 2.9E-06 6.3E-11 88.9 14.5 60 231-290 139-206 (583)
199 PRK05732 2-octaprenyl-6-methox 98.4 5.6E-07 1.2E-11 90.0 8.8 42 85-126 126-169 (395)
200 PRK07588 hypothetical protein; 98.4 7.3E-07 1.6E-11 89.1 9.5 119 6-127 1-159 (391)
201 PRK06753 hypothetical protein; 98.4 1.6E-06 3.5E-11 86.0 11.8 118 6-126 1-152 (373)
202 PRK09754 phenylpropionate diox 98.4 1.6E-06 3.5E-11 86.7 11.7 99 190-292 3-114 (396)
203 PRK07233 hypothetical protein; 98.4 1.1E-06 2.4E-11 89.0 10.7 56 231-288 197-252 (434)
204 PRK05257 malate:quinone oxidor 98.4 9.6E-06 2.1E-10 82.9 17.4 59 231-290 182-246 (494)
205 PRK05868 hypothetical protein; 98.4 1.3E-06 2.7E-11 86.6 10.5 119 6-127 2-161 (372)
206 TIGR01813 flavo_cyto_c flavocy 98.4 5.1E-06 1.1E-10 84.3 15.2 65 231-295 129-198 (439)
207 COG1232 HemY Protoporphyrinoge 98.4 1.8E-06 3.9E-11 85.7 11.0 37 6-43 1-37 (444)
208 PTZ00139 Succinate dehydrogena 98.4 5.9E-06 1.3E-10 87.0 15.1 58 231-288 165-227 (617)
209 PF00070 Pyr_redox: Pyridine n 98.4 7.4E-07 1.6E-11 67.3 6.2 78 7-110 1-80 (80)
210 PRK09078 sdhA succinate dehydr 98.4 5.6E-06 1.2E-10 86.9 14.9 59 231-289 148-211 (598)
211 TIGR02023 BchP-ChlP geranylger 98.4 1E-06 2.2E-11 87.9 9.1 32 6-40 1-32 (388)
212 TIGR02733 desat_CrtD C-3',4' d 98.4 4.6E-06 9.9E-11 86.0 14.1 57 231-288 231-292 (492)
213 PRK06847 hypothetical protein; 98.4 5.7E-06 1.2E-10 82.1 14.2 102 190-293 4-166 (375)
214 TIGR01988 Ubi-OHases Ubiquinon 98.4 1.2E-06 2.5E-11 87.3 9.3 117 7-126 1-163 (385)
215 TIGR01984 UbiH 2-polyprenyl-6- 98.4 1E-06 2.2E-11 87.8 8.8 117 7-126 1-162 (382)
216 TIGR01789 lycopene_cycl lycope 98.4 2.5E-06 5.4E-11 84.3 11.2 112 7-126 1-138 (370)
217 PF12831 FAD_oxidored: FAD dep 98.4 3.5E-07 7.6E-12 92.2 5.3 115 7-124 1-148 (428)
218 PRK06996 hypothetical protein; 98.4 1.1E-06 2.4E-11 88.0 8.6 124 1-124 7-172 (398)
219 PF01494 FAD_binding_3: FAD bi 98.4 5.2E-07 1.1E-11 88.5 6.2 34 6-42 2-35 (356)
220 PRK05945 sdhA succinate dehydr 98.4 1.6E-06 3.4E-11 90.8 9.9 38 4-42 2-39 (575)
221 PF01134 GIDA: Glucose inhibit 98.4 1.1E-06 2.4E-11 85.5 8.0 114 7-124 1-150 (392)
222 PRK09564 coenzyme A disulfide 98.3 3.3E-06 7.2E-11 85.9 11.7 101 191-293 1-118 (444)
223 PF00890 FAD_binding_2: FAD bi 98.3 6.6E-06 1.4E-10 83.0 13.7 60 231-291 140-204 (417)
224 KOG2415 Electron transfer flav 98.3 1.6E-05 3.5E-10 75.9 15.1 57 232-288 183-254 (621)
225 TIGR03385 CoA_CoA_reduc CoA-di 98.3 2E-06 4.3E-11 87.0 9.9 98 5-127 137-234 (427)
226 TIGR00562 proto_IX_ox protopor 98.3 1.2E-05 2.6E-10 82.2 15.6 40 247-288 238-277 (462)
227 PRK13369 glycerol-3-phosphate 98.3 4.1E-06 9E-11 86.3 12.1 39 1-42 2-40 (502)
228 PRK11883 protoporphyrinogen ox 98.3 2.2E-05 4.7E-10 80.0 17.3 54 233-288 219-273 (451)
229 TIGR02028 ChlP geranylgeranyl 98.3 2.4E-06 5.2E-11 85.4 10.1 34 6-42 1-34 (398)
230 TIGR01989 COQ6 Ubiquinone bios 98.3 3.6E-06 7.7E-11 85.4 11.4 43 86-128 134-185 (437)
231 PRK08958 sdhA succinate dehydr 98.3 7.4E-06 1.6E-10 85.8 13.8 59 231-289 142-205 (588)
232 TIGR02730 carot_isom carotene 98.3 7.4E-07 1.6E-11 91.8 6.3 58 231-289 228-285 (493)
233 TIGR01320 mal_quin_oxido malat 98.3 1.1E-05 2.3E-10 82.5 14.2 59 231-290 177-240 (483)
234 PRK13339 malate:quinone oxidor 98.3 8.7E-06 1.9E-10 82.8 13.4 59 232-291 184-248 (497)
235 PRK08641 sdhA succinate dehydr 98.3 1E-05 2.3E-10 84.8 14.2 59 231-289 132-199 (589)
236 PLN00128 Succinate dehydrogena 98.3 1.2E-05 2.7E-10 84.7 14.7 59 231-289 186-249 (635)
237 PF04820 Trp_halogenase: Trypt 98.3 3.3E-06 7.1E-11 85.6 9.5 59 232-291 154-212 (454)
238 COG2907 Predicted NAD/FAD-bind 98.3 3.3E-05 7.2E-10 72.3 15.1 59 230-290 215-273 (447)
239 PRK11101 glpA sn-glycerol-3-ph 98.3 3.1E-06 6.7E-11 88.0 9.4 36 4-42 5-40 (546)
240 PRK04965 NADH:flavorubredoxin 98.3 3.8E-06 8.2E-11 83.5 9.7 98 5-127 141-240 (377)
241 PF01134 GIDA: Glucose inhibit 98.3 9.8E-06 2.1E-10 79.1 11.9 95 192-288 1-150 (392)
242 TIGR02732 zeta_caro_desat caro 98.3 3.1E-05 6.6E-10 79.2 16.1 59 231-289 218-283 (474)
243 PRK07803 sdhA succinate dehydr 98.2 5.2E-06 1.1E-10 87.6 10.7 35 5-42 8-42 (626)
244 PRK06617 2-octaprenyl-6-methox 98.2 2.7E-06 5.9E-11 84.4 8.1 33 6-41 2-34 (374)
245 COG1635 THI4 Ribulose 1,5-bisp 98.2 2.9E-05 6.4E-10 68.2 13.3 168 189-360 29-259 (262)
246 PRK07573 sdhA succinate dehydr 98.2 1.1E-05 2.5E-10 85.1 12.8 34 5-41 35-68 (640)
247 PLN02661 Putative thiazole syn 98.2 8.9E-05 1.9E-09 71.4 17.4 173 183-360 85-327 (357)
248 COG1249 Lpd Pyruvate/2-oxoglut 98.2 6.7E-06 1.4E-10 82.5 10.1 99 5-129 173-275 (454)
249 PRK06912 acoL dihydrolipoamide 98.2 5.1E-06 1.1E-10 84.8 9.6 98 5-128 170-270 (458)
250 PRK10262 thioredoxin reductase 98.2 4E-05 8.6E-10 74.4 15.4 101 189-293 5-120 (321)
251 TIGR03169 Nterm_to_SelD pyridi 98.2 6.5E-06 1.4E-10 81.4 10.0 98 192-294 1-111 (364)
252 PLN02661 Putative thiazole syn 98.2 6.3E-06 1.4E-10 79.2 9.3 35 5-42 92-127 (357)
253 PF07992 Pyr_redox_2: Pyridine 98.2 2.3E-06 4.9E-11 76.9 6.1 137 192-329 1-200 (201)
254 TIGR02374 nitri_red_nirB nitri 98.2 4.7E-06 1E-10 90.3 9.5 98 193-294 1-112 (785)
255 PRK12835 3-ketosteroid-delta-1 98.2 2.6E-05 5.6E-10 81.7 14.6 66 231-296 212-282 (584)
256 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 5.2E-06 1.1E-10 82.8 9.1 35 5-42 2-36 (390)
257 PRK08243 4-hydroxybenzoate 3-m 98.2 7.8E-06 1.7E-10 81.7 10.3 35 5-42 2-36 (392)
258 PRK07057 sdhA succinate dehydr 98.2 5.9E-06 1.3E-10 86.6 9.8 35 4-41 11-45 (591)
259 COG3380 Predicted NAD/FAD-depe 98.2 5.3E-06 1.2E-10 75.0 8.0 34 6-42 2-35 (331)
260 PRK07236 hypothetical protein; 98.2 1.3E-05 2.8E-10 80.0 11.7 102 189-292 5-156 (386)
261 PRK07538 hypothetical protein; 98.2 6.2E-06 1.3E-10 83.0 9.5 34 6-42 1-34 (413)
262 PRK06475 salicylate hydroxylas 98.2 7.3E-06 1.6E-10 82.1 9.6 35 5-42 2-36 (400)
263 PF02852 Pyr_redox_dim: Pyridi 98.2 1.3E-06 2.7E-11 70.5 3.3 56 404-459 46-104 (110)
264 COG0644 FixC Dehydrogenases (f 98.2 0.00011 2.4E-09 73.5 17.8 97 191-288 4-150 (396)
265 PTZ00318 NADH dehydrogenase-li 98.2 1.5E-05 3.2E-10 80.5 11.6 102 189-293 9-128 (424)
266 PRK05976 dihydrolipoamide dehy 98.2 9.5E-06 2.1E-10 83.1 10.2 98 5-128 180-283 (472)
267 COG1231 Monoamine oxidase [Ami 98.2 5.5E-05 1.2E-09 73.9 14.7 38 4-44 6-43 (450)
268 PRK06416 dihydrolipoamide dehy 98.2 9E-06 1.9E-10 83.1 9.9 98 5-128 172-274 (462)
269 TIGR02032 GG-red-SF geranylger 98.2 2.8E-05 6.1E-10 74.2 12.7 98 192-291 2-149 (295)
270 TIGR03219 salicylate_mono sali 98.1 2.5E-05 5.4E-10 78.7 12.8 34 6-42 1-35 (414)
271 PRK14989 nitrite reductase sub 98.1 1.2E-05 2.5E-10 87.4 11.0 100 190-293 3-116 (847)
272 PRK14694 putative mercuric red 98.1 1.2E-05 2.7E-10 82.2 10.6 96 5-128 178-275 (468)
273 PRK08294 phenol 2-monooxygenas 98.1 1.4E-05 3.1E-10 84.4 11.2 37 3-42 30-67 (634)
274 COG0445 GidA Flavin-dependent 98.1 3.2E-06 6.9E-11 83.7 5.7 119 3-126 2-158 (621)
275 PRK13512 coenzyme A disulfide 98.1 9E-06 1.9E-10 82.4 9.2 96 5-128 148-243 (438)
276 PRK12770 putative glutamate sy 98.1 8.1E-06 1.8E-10 80.3 8.5 103 189-291 17-132 (352)
277 TIGR01424 gluta_reduc_2 glutat 98.1 1.3E-05 2.8E-10 81.5 10.1 97 5-127 166-264 (446)
278 COG1252 Ndh NADH dehydrogenase 98.1 1.4E-05 3.1E-10 78.3 9.7 100 190-294 3-115 (405)
279 PRK12779 putative bifunctional 98.1 1E-05 2.2E-10 88.7 9.6 93 189-291 305-406 (944)
280 PRK06116 glutathione reductase 98.1 1.5E-05 3.3E-10 81.2 10.2 98 5-128 167-267 (450)
281 PF01946 Thi4: Thi4 family; PD 98.1 2.9E-06 6.3E-11 74.8 4.2 35 5-42 17-51 (230)
282 PLN02487 zeta-carotene desatur 98.1 6E-05 1.3E-09 78.1 14.5 60 230-289 293-359 (569)
283 PRK07846 mycothione reductase; 98.1 1.8E-05 3.9E-10 80.4 10.6 97 5-128 166-264 (451)
284 PRK09853 putative selenate red 98.1 2E-05 4.4E-10 85.6 11.4 91 189-291 538-636 (1019)
285 PRK05249 soluble pyridine nucl 98.1 1.7E-05 3.6E-10 81.1 10.3 98 5-128 175-274 (461)
286 TIGR03143 AhpF_homolog putativ 98.1 4.7E-05 1E-09 79.5 13.7 99 191-293 5-117 (555)
287 PF13450 NAD_binding_8: NAD(P) 98.1 4.2E-06 9E-11 60.8 4.1 31 10-43 1-31 (68)
288 COG0578 GlpA Glycerol-3-phosph 98.1 7.3E-06 1.6E-10 82.6 7.2 58 231-290 163-225 (532)
289 PLN02463 lycopene beta cyclase 98.1 4.8E-05 1E-09 76.8 13.0 98 191-291 29-170 (447)
290 PF14759 Reductase_C: Reductas 98.1 3.7E-05 8E-10 58.6 9.4 80 373-458 1-82 (85)
291 PRK11749 dihydropyrimidine deh 98.1 1.2E-05 2.6E-10 82.0 8.6 90 189-289 139-236 (457)
292 PRK06370 mercuric reductase; V 98.1 2.3E-05 4.9E-10 80.2 10.5 98 5-128 171-273 (463)
293 TIGR02485 CobZ_N-term precorri 98.1 4.5E-05 9.9E-10 77.2 12.6 66 231-296 122-190 (432)
294 PRK07818 dihydrolipoamide dehy 98.1 2.2E-05 4.7E-10 80.4 10.2 97 5-127 172-274 (466)
295 PRK06834 hypothetical protein; 98.1 6.6E-05 1.4E-09 77.0 13.8 101 191-293 4-159 (488)
296 PTZ00306 NADH-dependent fumara 98.0 6.9E-05 1.5E-09 84.6 15.0 36 4-42 408-443 (1167)
297 TIGR02053 MerA mercuric reduct 98.0 2.6E-05 5.5E-10 79.8 10.6 98 5-128 166-268 (463)
298 PRK12839 hypothetical protein; 98.0 0.00014 3.1E-09 75.9 16.3 65 231-295 213-282 (572)
299 PRK06263 sdhA succinate dehydr 98.0 1.4E-05 3E-10 83.2 8.6 55 302-359 347-402 (543)
300 TIGR01421 gluta_reduc_1 glutat 98.0 2.5E-05 5.5E-10 79.4 10.3 97 5-127 166-266 (450)
301 TIGR01811 sdhA_Bsu succinate d 98.0 8E-05 1.7E-09 78.3 14.0 58 231-288 128-194 (603)
302 COG0492 TrxB Thioredoxin reduc 98.0 0.00016 3.5E-09 69.0 14.7 99 191-293 4-118 (305)
303 PRK12845 3-ketosteroid-delta-1 98.0 0.00017 3.7E-09 75.1 16.2 64 231-295 216-284 (564)
304 PRK06327 dihydrolipoamide dehy 98.0 2.7E-05 5.8E-10 79.8 10.0 98 5-128 183-286 (475)
305 PRK08244 hypothetical protein; 98.0 8.4E-05 1.8E-09 76.6 13.3 102 191-292 3-161 (493)
306 COG0446 HcaD Uncharacterized N 98.0 2.7E-05 5.8E-10 78.2 9.5 96 6-126 137-237 (415)
307 PRK08163 salicylate hydroxylas 98.0 8.8E-05 1.9E-09 74.2 13.1 101 190-292 4-168 (396)
308 PRK07845 flavoprotein disulfid 98.0 4.2E-05 9.1E-10 78.2 10.8 98 5-128 177-276 (466)
309 PRK07045 putative monooxygenas 98.0 0.00012 2.5E-09 73.2 13.7 104 190-293 5-168 (388)
310 TIGR01316 gltA glutamate synth 98.0 1.7E-05 3.6E-10 80.7 7.7 93 189-292 132-233 (449)
311 PRK12843 putative FAD-binding 98.0 0.0002 4.3E-09 75.2 15.9 64 231-295 220-288 (578)
312 TIGR00136 gidA glucose-inhibit 98.0 3.9E-05 8.5E-10 79.0 10.3 33 6-41 1-33 (617)
313 PLN02507 glutathione reductase 98.0 3.8E-05 8.2E-10 79.0 10.3 98 5-128 203-302 (499)
314 PRK06115 dihydrolipoamide dehy 98.0 3.9E-05 8.4E-10 78.4 10.1 97 5-127 174-277 (466)
315 PF00743 FMO-like: Flavin-bind 98.0 0.00012 2.7E-09 75.4 13.7 137 191-327 2-194 (531)
316 PRK05714 2-octaprenyl-3-methyl 98.0 0.00011 2.4E-09 73.8 13.1 100 191-292 3-170 (405)
317 PRK07333 2-octaprenyl-6-methox 98.0 0.00013 2.9E-09 73.1 13.6 99 192-292 3-169 (403)
318 TIGR03452 mycothione_red mycot 97.9 5.1E-05 1.1E-09 77.2 10.6 96 5-127 169-266 (452)
319 PTZ00052 thioredoxin reductase 97.9 4.6E-05 9.9E-10 78.5 10.0 97 5-128 182-280 (499)
320 PRK13748 putative mercuric red 97.9 5.1E-05 1.1E-09 79.6 10.3 96 5-128 270-367 (561)
321 TIGR01984 UbiH 2-polyprenyl-6- 97.9 0.00014 3.1E-09 72.3 13.0 98 192-291 1-163 (382)
322 PRK07208 hypothetical protein; 97.9 1.4E-05 3E-10 82.2 5.8 58 231-288 217-278 (479)
323 TIGR01423 trypano_reduc trypan 97.9 5.2E-05 1.1E-09 77.6 9.9 97 5-127 187-289 (486)
324 PRK09126 hypothetical protein; 97.9 0.00018 4E-09 71.8 13.7 101 191-293 4-170 (392)
325 PRK08010 pyridine nucleotide-d 97.9 5.9E-05 1.3E-09 76.6 10.1 96 5-127 158-255 (441)
326 PRK12831 putative oxidoreducta 97.9 3.1E-05 6.6E-10 79.0 7.9 94 189-292 139-243 (464)
327 TIGR01438 TGR thioredoxin and 97.9 5.4E-05 1.2E-09 77.6 9.8 96 5-127 180-280 (484)
328 TIGR01318 gltD_gamma_fam gluta 97.9 3.5E-05 7.5E-10 78.7 8.4 92 189-291 140-239 (467)
329 COG2072 TrkA Predicted flavopr 97.9 0.00032 6.9E-09 71.0 15.1 138 190-328 8-187 (443)
330 PRK06184 hypothetical protein; 97.9 0.00017 3.6E-09 74.6 13.4 99 191-291 4-169 (502)
331 PRK14727 putative mercuric red 97.9 6.3E-05 1.4E-09 77.2 10.1 96 5-128 188-285 (479)
332 PLN02568 polyamine oxidase 97.9 1.8E-05 3.8E-10 81.8 5.7 43 1-43 1-45 (539)
333 COG0654 UbiH 2-polyprenyl-6-me 97.9 0.00022 4.7E-09 71.2 13.3 101 190-292 2-164 (387)
334 PRK07588 hypothetical protein; 97.9 0.00025 5.3E-09 70.9 13.5 99 192-293 2-161 (391)
335 KOG1336 Monodehydroascorbate/f 97.9 4E-05 8.6E-10 75.0 7.4 104 4-132 212-319 (478)
336 PRK05868 hypothetical protein; 97.9 0.00016 3.4E-09 71.7 11.9 101 191-293 2-163 (372)
337 PRK10157 putative oxidoreducta 97.8 0.00025 5.3E-09 71.7 13.3 98 191-290 6-164 (428)
338 PRK07608 ubiquinone biosynthes 97.8 0.00025 5.4E-09 70.7 13.3 99 191-292 6-169 (388)
339 PTZ00058 glutathione reductase 97.8 0.00011 2.3E-09 76.4 10.6 98 5-128 237-338 (561)
340 PRK06292 dihydrolipoamide dehy 97.8 8.9E-05 1.9E-09 75.8 10.1 98 5-129 169-271 (460)
341 TIGR01988 Ubi-OHases Ubiquinon 97.8 0.00027 5.8E-09 70.3 13.3 99 192-292 1-165 (385)
342 PLN02697 lycopene epsilon cycl 97.8 0.00027 5.9E-09 72.6 13.3 98 191-290 109-248 (529)
343 KOG2665 Predicted FAD-dependen 97.8 0.00016 3.5E-09 66.9 10.3 61 235-295 199-262 (453)
344 PRK07190 hypothetical protein; 97.8 0.0003 6.5E-09 72.2 13.3 99 191-291 6-166 (487)
345 PRK06753 hypothetical protein; 97.8 0.00017 3.8E-09 71.4 11.4 100 192-293 2-155 (373)
346 TIGR01317 GOGAT_sm_gam glutama 97.8 6.9E-05 1.5E-09 76.8 8.6 90 189-289 142-239 (485)
347 PF01946 Thi4: Thi4 family; PD 97.8 0.00045 9.7E-09 61.2 12.3 111 183-293 10-168 (230)
348 KOG0029 Amine oxidase [Seconda 97.8 2.6E-05 5.6E-10 79.3 5.4 38 4-44 14-51 (501)
349 PLN02852 ferredoxin-NADP+ redu 97.8 7E-05 1.5E-09 76.0 8.4 91 189-290 25-126 (491)
350 PRK01438 murD UDP-N-acetylmura 97.8 0.0001 2.2E-09 75.7 9.8 81 189-295 15-95 (480)
351 PRK12778 putative bifunctional 97.8 5.9E-05 1.3E-09 81.7 8.2 94 189-292 430-532 (752)
352 TIGR01790 carotene-cycl lycope 97.8 0.00038 8.3E-09 69.4 13.3 97 192-290 1-141 (388)
353 KOG4254 Phytoene desaturase [C 97.8 0.00017 3.6E-09 70.0 10.0 56 232-288 264-319 (561)
354 PRK05192 tRNA uridine 5-carbox 97.8 0.00025 5.5E-09 73.2 12.0 96 191-288 5-155 (618)
355 PF01494 FAD_binding_3: FAD bi 97.8 0.00028 6.1E-09 69.1 12.0 102 192-293 3-175 (356)
356 PRK12266 glpD glycerol-3-phosp 97.8 3.1E-05 6.7E-10 79.9 5.3 58 231-290 154-216 (508)
357 TIGR03315 Se_ygfK putative sel 97.8 0.00012 2.5E-09 80.1 9.9 90 190-291 537-634 (1012)
358 PRK07364 2-octaprenyl-6-methox 97.8 0.00036 7.8E-09 70.3 13.0 101 190-292 18-183 (415)
359 PRK06467 dihydrolipoamide dehy 97.7 0.00017 3.7E-09 73.8 10.2 97 5-128 174-276 (471)
360 PRK08849 2-octaprenyl-3-methyl 97.7 0.00052 1.1E-08 68.4 13.5 101 191-293 4-170 (384)
361 PRK08013 oxidoreductase; Provi 97.7 0.0005 1.1E-08 68.9 13.2 100 191-292 4-170 (400)
362 COG3573 Predicted oxidoreducta 97.7 0.00018 4E-09 67.1 8.9 38 2-42 2-39 (552)
363 PRK08020 ubiF 2-octaprenyl-3-m 97.7 0.00048 1E-08 68.8 12.7 101 190-292 5-171 (391)
364 COG2509 Uncharacterized FAD-de 97.7 0.002 4.3E-08 63.0 16.0 48 78-125 179-229 (486)
365 KOG1399 Flavin-containing mono 97.7 0.0008 1.7E-08 67.4 13.8 137 190-327 6-197 (448)
366 PRK12810 gltD glutamate syntha 97.7 0.00011 2.4E-09 75.2 7.9 90 189-289 142-239 (471)
367 PRK12775 putative trifunctiona 97.7 0.00011 2.5E-09 81.3 8.5 93 190-292 430-532 (1006)
368 PRK06617 2-octaprenyl-6-methox 97.7 0.00061 1.3E-08 67.6 13.0 99 192-293 3-163 (374)
369 PRK12809 putative oxidoreducta 97.7 0.00013 2.7E-09 77.5 8.6 92 189-291 309-408 (639)
370 PRK10015 oxidoreductase; Provi 97.7 0.00066 1.4E-08 68.6 13.2 98 191-290 6-164 (429)
371 PRK08850 2-octaprenyl-6-methox 97.7 0.0007 1.5E-08 68.0 13.2 101 190-292 4-170 (405)
372 PRK06183 mhpA 3-(3-hydroxyphen 97.6 0.00071 1.5E-08 70.6 13.6 101 190-292 10-176 (538)
373 PRK08132 FAD-dependent oxidore 97.6 0.00069 1.5E-08 70.8 13.5 103 190-292 23-187 (547)
374 COG0493 GltD NADPH-dependent g 97.6 0.00012 2.7E-09 73.5 7.5 89 189-288 122-218 (457)
375 KOG2844 Dimethylglycine dehydr 97.6 0.00026 5.5E-09 71.9 9.4 73 214-291 172-244 (856)
376 KOG2404 Fumarate reductase, fl 97.6 0.00029 6.2E-09 65.5 8.9 73 213-288 122-204 (477)
377 COG3349 Uncharacterized conser 97.6 6.8E-05 1.5E-09 74.6 5.3 36 6-44 1-36 (485)
378 PRK06475 salicylate hydroxylas 97.6 0.00089 1.9E-08 67.1 13.5 100 191-292 3-169 (400)
379 TIGR00136 gidA glucose-inhibit 97.6 0.00085 1.8E-08 69.3 13.0 98 192-290 2-154 (617)
380 PRK12814 putative NADPH-depend 97.6 0.00017 3.7E-09 76.7 8.2 92 189-291 192-291 (652)
381 PTZ00153 lipoamide dehydrogena 97.6 0.00029 6.4E-09 74.3 9.4 98 5-128 312-429 (659)
382 PRK07494 2-octaprenyl-6-methox 97.6 0.0012 2.6E-08 65.9 13.3 100 190-292 7-169 (388)
383 PRK12769 putative oxidoreducta 97.5 0.00023 5.1E-09 75.8 8.5 91 189-290 326-424 (654)
384 PRK06185 hypothetical protein; 97.5 0.0012 2.5E-08 66.4 13.2 101 190-291 6-170 (407)
385 TIGR03219 salicylate_mono sali 97.5 0.00059 1.3E-08 68.8 10.9 99 192-292 2-161 (414)
386 TIGR01372 soxA sarcosine oxida 97.5 0.00094 2E-08 74.4 13.3 102 190-293 163-289 (985)
387 PLN02546 glutathione reductase 97.5 0.00045 9.9E-09 71.8 10.1 98 5-128 252-352 (558)
388 PLN02985 squalene monooxygenas 97.5 0.00011 2.5E-09 75.6 5.4 36 4-42 42-77 (514)
389 PRK09897 hypothetical protein; 97.5 0.0016 3.5E-08 67.1 13.6 99 191-291 2-167 (534)
390 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00012 2.6E-09 72.3 5.2 34 6-42 3-36 (436)
391 PTZ00188 adrenodoxin reductase 97.5 0.00037 8E-09 70.0 8.6 92 189-291 38-139 (506)
392 PRK02106 choline dehydrogenase 97.5 0.00012 2.7E-09 76.5 5.2 39 1-42 1-40 (560)
393 PLN02268 probable polyamine ox 97.5 0.00013 2.9E-09 74.0 5.2 41 246-288 210-250 (435)
394 PRK12834 putative FAD-binding 97.5 0.00013 2.7E-09 76.2 5.1 37 2-41 1-37 (549)
395 PF06039 Mqo: Malate:quinone o 97.5 6.2E-05 1.4E-09 73.9 2.6 91 233-325 182-290 (488)
396 TIGR01789 lycopene_cycl lycope 97.5 0.00098 2.1E-08 65.9 11.1 94 192-291 1-139 (370)
397 PF12831 FAD_oxidored: FAD dep 97.5 0.00013 2.8E-09 73.7 4.8 95 193-288 2-148 (428)
398 TIGR00031 UDP-GALP_mutase UDP- 97.5 0.00016 3.4E-09 71.1 5.2 34 6-42 2-35 (377)
399 PRK05732 2-octaprenyl-6-methox 97.5 0.002 4.4E-08 64.3 13.4 100 191-292 4-171 (395)
400 PLN02576 protoporphyrinogen ox 97.4 0.00016 3.6E-09 74.6 5.5 38 4-44 11-49 (496)
401 PTZ00367 squalene epoxidase; P 97.4 0.00014 3.1E-09 75.5 4.9 35 4-41 32-66 (567)
402 PLN02927 antheraxanthin epoxid 97.4 0.00016 3.4E-09 75.9 5.1 35 4-41 80-114 (668)
403 PF05834 Lycopene_cycl: Lycope 97.4 0.002 4.4E-08 63.8 12.7 96 193-291 2-143 (374)
404 TIGR01989 COQ6 Ubiquinone bios 97.4 0.002 4.4E-08 65.3 12.9 102 192-293 2-186 (437)
405 PRK01438 murD UDP-N-acetylmura 97.4 0.00093 2E-08 68.7 10.3 82 5-133 16-97 (480)
406 KOG2311 NAD/FAD-utilizing prot 97.4 0.00034 7.3E-09 68.3 6.3 35 4-41 27-61 (679)
407 PRK06996 hypothetical protein; 97.4 0.0023 5E-08 64.1 12.5 98 190-289 11-173 (398)
408 PF13454 NAD_binding_9: FAD-NA 97.4 0.0028 6E-08 54.4 11.3 41 246-288 114-155 (156)
409 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00015 3.3E-09 69.4 3.8 67 233-299 194-268 (296)
410 KOG2495 NADH-dehydrogenase (ub 97.4 0.00099 2.2E-08 64.4 9.1 102 189-293 54-173 (491)
411 PRK13984 putative oxidoreducta 97.3 0.00053 1.1E-08 72.6 8.1 91 189-290 282-380 (604)
412 KOG0404 Thioredoxin reductase 97.3 0.0016 3.6E-08 57.4 9.5 99 190-292 8-126 (322)
413 PRK08243 4-hydroxybenzoate 3-m 97.3 0.0036 7.8E-08 62.5 13.3 100 191-292 3-165 (392)
414 KOG0685 Flavin-containing amin 97.3 0.0003 6.5E-09 69.0 5.2 38 4-43 20-57 (498)
415 PRK12416 protoporphyrinogen ox 97.3 0.00027 5.8E-09 72.3 5.2 51 233-287 227-277 (463)
416 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00074 1.6E-08 67.2 7.9 103 192-296 2-143 (433)
417 KOG0399 Glutamate synthase [Am 97.3 0.00057 1.2E-08 73.0 7.2 90 189-289 1784-1881(2142)
418 TIGR02023 BchP-ChlP geranylger 97.3 0.0036 7.7E-08 62.5 12.9 98 192-292 2-157 (388)
419 PRK07538 hypothetical protein; 97.3 0.0035 7.6E-08 63.1 12.8 99 192-292 2-167 (413)
420 PRK12771 putative glutamate sy 97.3 0.00076 1.6E-08 70.7 8.1 91 189-291 136-235 (564)
421 PRK11445 putative oxidoreducta 97.2 0.0049 1.1E-07 60.6 13.1 97 192-292 3-159 (351)
422 KOG1335 Dihydrolipoamide dehyd 97.2 0.00061 1.3E-08 64.9 6.0 97 5-127 211-315 (506)
423 PLN02464 glycerol-3-phosphate 97.2 0.00035 7.6E-09 73.8 4.9 60 231-290 231-296 (627)
424 PRK12837 3-ketosteroid-delta-1 97.2 0.00037 8E-09 72.1 4.9 34 5-42 7-40 (513)
425 PRK06126 hypothetical protein; 97.2 0.0056 1.2E-07 64.0 13.6 100 190-291 7-189 (545)
426 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00055 1.2E-08 68.1 4.9 34 6-42 1-34 (433)
427 TIGR02360 pbenz_hydroxyl 4-hyd 97.1 0.0057 1.2E-07 61.1 12.2 101 191-292 3-165 (390)
428 TIGR02028 ChlP geranylgeranyl 97.1 0.0098 2.1E-07 59.5 13.5 100 192-292 2-162 (398)
429 KOG2614 Kynurenine 3-monooxyge 97.1 0.00065 1.4E-08 65.6 4.7 35 5-42 2-36 (420)
430 PLN02676 polyamine oxidase 97.1 0.00076 1.6E-08 69.2 5.6 39 247-287 245-283 (487)
431 COG3380 Predicted NAD/FAD-depe 97.1 0.0026 5.6E-08 58.1 8.1 101 192-295 3-165 (331)
432 COG2081 Predicted flavoprotein 97.0 0.012 2.5E-07 57.1 12.8 120 4-126 2-167 (408)
433 PRK06567 putative bifunctional 97.0 0.0015 3.2E-08 70.8 7.3 35 189-223 382-416 (1028)
434 PRK11101 glpA sn-glycerol-3-ph 97.0 0.0087 1.9E-07 62.5 12.9 33 191-223 7-39 (546)
435 PRK08255 salicylyl-CoA 5-hydro 97.0 0.00068 1.5E-08 73.5 4.9 34 6-42 1-36 (765)
436 PRK12844 3-ketosteroid-delta-1 97.0 0.00086 1.9E-08 70.0 5.1 35 5-42 6-40 (557)
437 COG0445 GidA Flavin-dependent 97.0 0.0016 3.5E-08 65.1 6.7 97 191-288 5-156 (621)
438 KOG1276 Protoporphyrinogen oxi 97.0 0.0014 3.1E-08 63.4 6.0 78 5-88 11-90 (491)
439 COG1251 NirB NAD(P)H-nitrite r 97.0 0.0047 1E-07 64.0 9.9 102 190-295 3-118 (793)
440 PLN02529 lysine-specific histo 96.9 0.001 2.2E-08 70.8 5.3 37 4-43 159-195 (738)
441 PLN02328 lysine-specific histo 96.9 0.0012 2.7E-08 70.6 5.4 36 5-43 238-273 (808)
442 COG1148 HdrA Heterodisulfide r 96.9 0.0024 5.2E-08 62.8 6.8 72 189-260 123-206 (622)
443 COG3634 AhpF Alkyl hydroperoxi 96.9 0.0087 1.9E-07 56.5 9.9 102 188-289 209-324 (520)
444 PRK08401 L-aspartate oxidase; 96.8 0.014 2.9E-07 59.8 12.2 97 191-290 2-175 (466)
445 PRK08275 putative oxidoreducta 96.8 0.019 4.1E-07 60.1 13.4 56 235-290 140-200 (554)
446 TIGR02462 pyranose_ox pyranose 96.8 0.0015 3.2E-08 67.3 4.6 59 237-295 219-284 (544)
447 KOG1298 Squalene monooxygenase 96.8 0.0017 3.6E-08 62.0 4.4 35 4-41 44-78 (509)
448 PLN00093 geranylgeranyl diphos 96.7 0.027 6E-07 57.2 13.4 102 190-292 39-201 (450)
449 PLN02985 squalene monooxygenas 96.7 0.021 4.6E-07 59.0 12.6 102 190-293 43-211 (514)
450 TIGR01812 sdhA_frdA_Gneg succi 96.7 0.025 5.4E-07 59.5 13.4 50 239-289 136-190 (566)
451 PRK12266 glpD glycerol-3-phosp 96.7 0.026 5.7E-07 58.4 13.2 34 191-224 7-40 (508)
452 COG0562 Glf UDP-galactopyranos 96.7 0.0022 4.8E-08 59.8 4.7 36 5-43 1-36 (374)
453 PLN02927 antheraxanthin epoxid 96.7 0.03 6.4E-07 59.1 13.6 35 189-223 80-114 (668)
454 PRK07804 L-aspartate oxidase; 96.7 0.025 5.5E-07 59.0 13.1 98 191-288 17-208 (541)
455 COG2303 BetA Choline dehydroge 96.7 0.0016 3.6E-08 67.6 4.2 59 236-295 207-271 (542)
456 COG4529 Uncharacterized protei 96.7 0.018 4E-07 57.1 11.0 102 191-293 2-167 (474)
457 PLN02464 glycerol-3-phosphate 96.6 0.031 6.7E-07 59.3 13.6 34 190-223 71-104 (627)
458 PRK06854 adenylylsulfate reduc 96.6 0.034 7.3E-07 58.8 13.3 97 191-288 12-193 (608)
459 PRK13369 glycerol-3-phosphate 96.5 0.04 8.6E-07 57.0 13.1 33 191-223 7-39 (502)
460 PRK08294 phenol 2-monooxygenas 96.5 0.035 7.6E-07 59.0 12.8 101 190-290 32-210 (634)
461 PRK07573 sdhA succinate dehydr 96.4 0.046 1E-06 58.1 12.8 48 240-288 178-230 (640)
462 PRK14106 murD UDP-N-acetylmura 96.4 0.017 3.7E-07 58.9 9.3 38 1-41 1-38 (450)
463 TIGR00551 nadB L-aspartate oxi 96.3 0.044 9.5E-07 56.4 12.2 56 235-291 131-190 (488)
464 PRK06452 sdhA succinate dehydr 96.3 0.05 1.1E-06 57.1 12.7 51 237-288 141-196 (566)
465 PRK14106 murD UDP-N-acetylmura 96.3 0.019 4E-07 58.6 9.2 82 189-295 4-85 (450)
466 TIGR01810 betA choline dehydro 96.3 0.0035 7.5E-08 65.3 3.8 59 236-295 198-260 (532)
467 PLN03000 amine oxidase 96.3 0.0054 1.2E-07 66.0 5.2 36 5-43 184-219 (881)
468 PRK06263 sdhA succinate dehydr 96.2 0.056 1.2E-06 56.5 12.6 53 237-289 139-196 (543)
469 PLN02785 Protein HOTHEAD 96.2 0.0058 1.3E-07 64.0 4.8 35 4-42 54-88 (587)
470 PF13450 NAD_binding_8: NAD(P) 96.1 0.0096 2.1E-07 43.1 4.4 33 195-227 1-33 (68)
471 PF14721 AIF_C: Apoptosis-indu 96.1 0.043 9.3E-07 43.8 8.2 33 352-389 1-34 (133)
472 KOG2311 NAD/FAD-utilizing prot 96.1 0.022 4.9E-07 56.0 8.0 33 190-222 28-60 (679)
473 KOG2614 Kynurenine 3-monooxyge 96.1 0.025 5.4E-07 55.0 8.2 35 190-224 2-36 (420)
474 PRK05945 sdhA succinate dehydr 96.0 0.092 2E-06 55.3 13.1 52 237-289 140-196 (575)
475 PLN02976 amine oxidase 96.0 0.0088 1.9E-07 67.0 5.3 36 5-43 693-728 (1713)
476 PRK07057 sdhA succinate dehydr 95.9 0.13 2.8E-06 54.3 13.4 32 191-222 13-44 (591)
477 PRK07803 sdhA succinate dehydr 95.8 0.13 2.8E-06 54.7 13.1 33 191-223 9-41 (626)
478 PTZ00367 squalene epoxidase; P 95.8 0.086 1.9E-06 55.1 11.3 33 191-223 34-66 (567)
479 PRK06069 sdhA succinate dehydr 95.8 0.14 3E-06 53.9 13.0 32 192-223 7-41 (577)
480 PRK08255 salicylyl-CoA 5-hydro 95.7 0.039 8.5E-07 60.0 8.9 33 192-224 2-36 (765)
481 TIGR03862 flavo_PP4765 unchara 95.7 0.11 2.4E-06 51.1 11.0 83 203-290 57-141 (376)
482 PRK07395 L-aspartate oxidase; 95.6 0.099 2.2E-06 54.6 10.9 50 239-288 141-195 (553)
483 PRK12834 putative FAD-binding 95.6 0.24 5.2E-06 51.9 13.7 33 191-223 5-37 (549)
484 KOG2853 Possible oxidoreductas 95.5 0.014 3.1E-07 54.9 3.8 39 5-43 86-125 (509)
485 KOG2960 Protein involved in th 95.4 0.0041 8.8E-08 54.5 -0.0 36 5-41 76-111 (328)
486 PRK08071 L-aspartate oxidase; 95.4 0.13 2.8E-06 53.3 11.0 45 245-290 142-190 (510)
487 PF02558 ApbA: Ketopantoate re 95.3 0.093 2E-06 44.5 8.2 83 193-296 1-85 (151)
488 PRK08626 fumarate reductase fl 95.3 0.23 5E-06 53.0 12.8 48 240-288 166-218 (657)
489 PF13434 K_oxygenase: L-lysine 95.3 0.044 9.6E-07 53.4 6.6 102 192-293 4-162 (341)
490 KOG1238 Glucose dehydrogenase/ 95.2 0.022 4.8E-07 58.5 4.4 38 4-43 56-93 (623)
491 PLN02815 L-aspartate oxidase 95.2 0.2 4.3E-06 52.7 11.7 32 191-223 30-61 (594)
492 TIGR02352 thiamin_ThiO glycine 95.1 0.08 1.7E-06 51.4 8.1 58 231-290 136-193 (337)
493 PRK05335 tRNA (uracil-5-)-meth 95.1 0.032 7E-07 55.4 5.1 35 191-225 3-37 (436)
494 TIGR01470 cysG_Nterm siroheme 95.1 0.067 1.4E-06 48.1 6.7 79 189-295 8-87 (205)
495 KOG3923 D-aspartate oxidase [A 95.0 0.039 8.5E-07 51.2 5.1 38 4-41 2-43 (342)
496 PRK06719 precorrin-2 dehydroge 95.0 0.045 9.7E-07 46.9 5.2 34 4-40 12-45 (157)
497 PF01488 Shikimate_DH: Shikima 95.0 0.039 8.5E-07 46.0 4.7 35 188-222 10-45 (135)
498 PRK09231 fumarate reductase fl 94.9 0.37 8.1E-06 50.7 12.8 45 245-290 147-196 (582)
499 TIGR01176 fum_red_Fp fumarate 94.9 0.4 8.6E-06 50.5 13.0 44 245-289 146-194 (580)
500 PRK07512 L-aspartate oxidase; 94.8 0.24 5.3E-06 51.3 11.0 52 237-289 141-196 (513)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.3e-53 Score=425.07 Aligned_cols=392 Identities=27% Similarity=0.404 Sum_probs=327.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|||||||+||++||..|++.+. +.+|+|+++++..+|.+|++++.++........ .....+++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 69 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ 69 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence 46789999999999999999999875 567999999999999999888766543221110 123467788
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+++++.++.|..++.+.+.+.+.+++++.||+||||||++| +.+| +++
T Consensus 70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~---------------------------~~~p---~~~ 119 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAA---------------------------RPLP---LLD 119 (396)
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCC---------------------------CCCC---CCC
Confidence 8999999998999999999999998888999999999999999 3333 344
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
...++++++++++++.++++.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..+++.+.+.+.+.++
T Consensus 120 ~~~~~v~~~~~~~da~~l~~~~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 197 (396)
T PRK09754 120 ALGERCFTLRHAGDAARLREVLQ--PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQ 197 (396)
T ss_pred cCCCCEEecCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHH
Confidence 44577999999999999988775 4789999999999999999999999999999999999887678899999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEe
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAV 322 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~ 322 (461)
+.||+++++++++++.. ++. ..+.+.+|+++++|.||+++|.+||..+++. ++.. +++|.||+++||+.|+|||+
T Consensus 198 ~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~ 273 (396)
T PRK09754 198 QAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAG 273 (396)
T ss_pred HCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEc
Confidence 99999999999999975 332 4578899999999999999999999987743 4444 46799999999999999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCcEE-EecCCcc
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV-LFGDNDL 401 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ 401 (461)
|||+..+.. .+...+.++|..|..||++||+||++.. ..|...|++|+..|++.++.+|...++.+ ..++..
T Consensus 274 GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~- 346 (396)
T PRK09754 274 GDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE- 346 (396)
T ss_pred cceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC-
Confidence 999987766 6666778899999999999999999754 55788999999999999999997655433 333322
Q ss_pred ccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCC
Q 012545 402 ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGL 455 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (461)
...|..+++++|+|+|+.++| .+.+...+..+|+.+.++ +.+.|.++.+
T Consensus 347 ---~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (396)
T PRK09754 347 ---TQKAIWFNLQNGVLIGAVTLN-QGREIRPIRKWIQSGKTF-DAKLLIDENI 395 (396)
T ss_pred ---CceEEEEEeeCCEEEEEEEEC-CHHHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence 344666777899999999998 567888889999999888 7788888764
No 2
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=4.4e-53 Score=402.57 Aligned_cols=402 Identities=53% Similarity=0.887 Sum_probs=362.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
...++|||+|++|..|+.++++.+. ...++++.++..+||.++.+++.+.. .+.+...+..+|+++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~-------------~~~~~a~r~~e~Yke 139 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLT-------------VGEGLAKRTPEFYKE 139 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceee-------------ccccccccChhhHhh
Confidence 5789999999999999999999986 46689998888899998777665543 333445678889999
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.+|++++++.|+.+|...+++.+.+|+.++|++|+||||+.+ ++++ +||.
T Consensus 140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~---------------------------~~l~---~pG~ 189 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSA---------------------------KTLD---IPGV 189 (478)
T ss_pred cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcc---------------------------ccCC---CCCc
Confidence 999999999999999999999999999999999999999988 4444 5777
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHh
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 244 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (461)
+.++++++++++++..+...+. ..++|+++|+|++|+|+|..|...+.+||++++.+.++++.|.+.+.+.+++.+++
T Consensus 190 ~~~nv~~ireieda~~l~~~~~--~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 190 ELKNVFYLREIEDANRLVAAIQ--LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN 267 (478)
T ss_pred cccceeeeccHHHHHHHHHHhc--cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHh
Confidence 7899999999999999988886 37789999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhcc-cccCCCcEEeCCCCCCCCCCEEEeC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDFFKTSADDVYAVG 323 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~-~~~~~g~i~vd~~~~t~~~~vya~G 323 (461)
+||++++++.+.+++.+++|++..|.+.||++++||.||+.+|.+||+.+++.+ ....+|+|.||+++||++|||||+|
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiG 347 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIG 347 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCccccc
Confidence 999999999999999988899999999999999999999999999999999854 4448999999999999999999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCcEEEecCCcccc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLAS 403 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 403 (461)
|++..+...++..+++.|+..|+.+|+.|...+...... .|+++|+|++..|+..|...|...++.+.+++.++
T Consensus 348 Dva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~----~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e~-- 421 (478)
T KOG1336|consen 348 DVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQD----AYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLEP-- 421 (478)
T ss_pred ceeecccccccccccchHHHHHHHHHHhhhhhhhccCcc----cccccchHHHHHhhhhccccCcCccceeeeccccc--
Confidence 999999998988888999999999999888877765432 27899999999999999999998889999998773
Q ss_pred CCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCcccCC
Q 012545 404 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 461 (461)
Q Consensus 404 ~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 461 (461)
..|..+|++ +..+++.+-+...++...++.+++.|+.+..++.+...+.+|+.++
T Consensus 422 --~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~~ 476 (478)
T KOG1336|consen 422 --GSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSFWLTI 476 (478)
T ss_pred --ccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhhHHhh
Confidence 459999999 9999999998888889999999999999998999999999887653
No 3
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1e-51 Score=408.03 Aligned_cols=397 Identities=23% Similarity=0.281 Sum_probs=300.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC-CC---CCCCCcccccccCCCCCC----CCC-CceeecCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VA---PYERPALSKAYLFPEGTA----RLP-GFHVCVGS 72 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~-~~---~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~ 72 (461)
|++.||+||||+||||..||..+++.|.+ |+++|+.+ .. ....|.++|.++...... ... .+......
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~ 77 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEV 77 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCC
Confidence 34689999999999999999999999987 99999995 31 122355566666544221 010 01110000
Q ss_pred -----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC--CcEEecCEEEEccCCCcccccccc
Q 012545 73 -----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVSITSLTS 133 (461)
Q Consensus 73 -----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~liiAtG~~~~~~~~~g 133 (461)
........+++.++|+++.++ ..-+ +.++|.+.+ .++++++++|||||++|.+|++||
T Consensus 78 ~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~f~--~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~ 154 (454)
T COG1249 78 PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-ARFV--DPHTVEVTGEDKETITADNIIIATGSRPRIPPGPG 154 (454)
T ss_pred CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EEEC--CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCC
Confidence 011123344556799999984 3333 367777765 478999999999999995544333
Q ss_pred ccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCC
Q 012545 134 IRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN 213 (461)
Q Consensus 134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g 213 (461)
.+...+++.++.....+ .|++++|||+|++|+|+|..++++|
T Consensus 155 ------------------------------~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG 196 (454)
T COG1249 155 ------------------------------IDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALG 196 (454)
T ss_pred ------------------------------CCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcC
Confidence 33344555544332223 4899999999999999999999999
Q ss_pred CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc--EEecCEEEEccCCCCC
Q 012545 214 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 214 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~--~i~aD~vi~a~G~~p~ 291 (461)
.+||++++.+++++. +|+++++.+.+.|++.|+++++++++++++..+++ ..+.+++|+ ++++|.+++|+|++||
T Consensus 197 ~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 197 SKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred CcEEEEecCCCCCCc-CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccC
Confidence 999999999999997 89999999999999999999999999999874444 578888776 7999999999999999
Q ss_pred hhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccC
Q 012545 292 ISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 367 (461)
Q Consensus 292 ~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 367 (461)
++-+ +.+++. ++|+|.||+++|||+|+|||+|||++.+. +...|..||++||.||++. .....+
T Consensus 274 ~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~--~~~~~d 341 (454)
T COG1249 274 TDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGG--KRTPID 341 (454)
T ss_pred CCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCC--CCCcCc
Confidence 9843 566777 56899999888889999999999998874 4667889999999999982 233467
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
|..+|+.+++.|+++++ |.++ +..+.....+ .+ .+..+|.|+++ ++++|||+|++|+++.|
T Consensus 342 ~~~iP~~ift~Peia~V--Glte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~El 419 (454)
T COG1249 342 YRLIPSVVFTDPEIASV--GLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASEL 419 (454)
T ss_pred ccCCCEEEECCCcceee--eCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHH
Confidence 89999999999998888 5543 2112221111 11 34678999887 57999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|.++++.+++....-+.+++.+
T Consensus 420 I~~~~~a~~~g~t~~~~~~~i~~HPT~sE 448 (454)
T COG1249 420 INEIALAIEMGATAEDLALTIHAHPTLSE 448 (454)
T ss_pred HHHHHHHHHCCCcHHHHhcCCCCCCChHH
Confidence 58999999999988887777777776654
No 4
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3.3e-49 Score=397.83 Aligned_cols=398 Identities=18% Similarity=0.230 Sum_probs=299.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCC-CHhHHHHc
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERL-LPEWYKEK 85 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (461)
+|||||||+||++||..|++++ ++.+|+|||+++.+.|.++.++...- . ...... ..... ...+.++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~-~----~~~~~~-----~~~~~~~~~~~~~~ 71 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG-E----VVEDRK-----YALAYTPEKFYDRK 71 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc-C----ccCCHH-----HcccCCHHHHHHhC
Confidence 8999999999999999999875 45679999999988887654332110 0 000000 00111 23455678
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCC---c--EEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 86 GIELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
+++++.+++|++||++++.|.+.++ + ++.||+||||||++|.+ ++
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~---------------------------~~--- 121 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS---------------------------LG--- 121 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC---------------------------CC---
Confidence 9999998899999999999887543 2 46899999999999932 21
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
.+.+++++++++.++..+.+.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus 122 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~ 197 (438)
T PRK13512 122 ---FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILD 197 (438)
T ss_pred ---CCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHH
Confidence 23456888999999999888876656799999999999999999999999999999999988875 79999999999
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADD 318 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~ 318 (461)
.|++.||++++++++++++. ..+++++|+++++|.|++|+|++||.++++. ++.. ++|+|.||+++||++|+
T Consensus 198 ~l~~~gI~i~~~~~v~~i~~------~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~ 271 (438)
T PRK13512 198 ELDKREIPYRLNEEIDAING------NEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPN 271 (438)
T ss_pred HHHhcCCEEEECCeEEEEeC------CEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCC
Confidence 99999999999999999963 1467788889999999999999999988754 4555 56889999999999999
Q ss_pred EEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCCc------
Q 012545 319 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------ 392 (461)
Q Consensus 319 vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------ 392 (461)
|||+|||+..+....+.....+....|.+||+.+|+||++... .....+..+|...+ ++..+..+|.++.+
T Consensus 272 IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~--~~~~ia~vGlte~~a~~~~~ 348 (438)
T PRK13512 272 IYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT-IEFKGFLGNNIVKF--FDYTFASVGVKPNELKQFDY 348 (438)
T ss_pred EEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCc-cccCCcccceEEEE--cCceEEeecCCHHHHccCCc
Confidence 9999999975433333333345666788999999999986421 11113334555444 44455555766522
Q ss_pred EE-EecC--Ccc--ccCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhh-hccCCCcc
Q 012545 393 TV-LFGD--NDL--ASATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFA 458 (461)
Q Consensus 393 ~~-~~~~--~~~--~~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 458 (461)
.+ .+.. ... ...+.+|.|+++ ++++|||+|++|++ +++ ++.++.+|+.+++++|+..+ ..+.++|.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~ 424 (438)
T PRK13512 349 KMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS 424 (438)
T ss_pred EEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 11 1110 110 123467888877 57999999999986 666 78999999999999987765 55566654
No 5
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.4e-48 Score=395.84 Aligned_cols=405 Identities=21% Similarity=0.280 Sum_probs=304.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+|||||||+||++||..|++.+. ..+|+|||+++.+.|..+.+.. +.... ...+ ........+.+++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~g 70 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGF--FDDP-------NTMIARTPEEFIKSG 70 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eeccc--cCCH-------HHhhcCCHHHHHHCC
Confidence 79999999999999999999763 4569999999887665433221 11100 0000 001234566788899
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCC---CcEEe--cCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC
Q 012545 87 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
++++.+++|++++++.+.+.+.+ +.++. ||+||+|||++|..|. +
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~------------------------------i 120 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP------------------------------I 120 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC------------------------------C
Confidence 99998889999999998887754 55566 9999999999995443 4
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
+|.+.+++++++++.++.++++.+....+++++|+|+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.
T Consensus 121 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~ 200 (444)
T PRK09564 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEE 200 (444)
T ss_pred CCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHH
Confidence 45555678899999999888888876567999999999999999999999999999999999888755799999999999
Q ss_pred HHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCCE
Q 012545 242 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDV 319 (461)
Q Consensus 242 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~v 319 (461)
+++.||+++++++++++.. ++.+..+.+++ .++++|.+++|+|++|+.++++. ++.. ++|+|.||+++||+.|||
T Consensus 201 l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~I 277 (444)
T PRK09564 201 LRENGVELHLNEFVKSLIG--EDKVEGVVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENI 277 (444)
T ss_pred HHHCCCEEEcCCEEEEEec--CCcEEEEEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCE
Confidence 9999999999999999965 44444555554 47999999999999999987754 4655 578999999999999999
Q ss_pred EEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC------cE
Q 012545 320 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT 393 (461)
Q Consensus 320 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~ 393 (461)
||+|||+..+....+.....+.+..|.+||+++|+||++.... .+. ..+.....+++..+..+|.++. ..
T Consensus 278 yA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~---~~~-~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~ 353 (444)
T PRK09564 278 YAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS---FKG-TLGSACIKVLDLEAARTGLTEEEAKKLGID 353 (444)
T ss_pred EEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC---CCC-cccceEEEECCEEEEEecCCHHHHHHCCCC
Confidence 9999999876654454445578889999999999999975311 111 1222223345666677786642 11
Q ss_pred ---EEecCCcc----ccCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhccC-CCccc
Q 012545 394 ---VLFGDNDL----ASATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNEG-LSFAS 459 (461)
Q Consensus 394 ---~~~~~~~~----~~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 459 (461)
..+..... .....+|.|+.+ ++++|||+|++|+. +.+ ++.++.+|+++++++++..+.-+- ++|++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 431 (444)
T PRK09564 354 YKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR 431 (444)
T ss_pred eEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 11111111 123467888877 58999999999985 655 799999999999998865444222 44443
No 6
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.3e-47 Score=406.23 Aligned_cols=389 Identities=20% Similarity=0.336 Sum_probs=306.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+++|||||+|+||+.+|..|++++. +..+|+||++++..+|.++.++..+... .... ......++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~-----------l~~~~~~~~~ 70 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEE-----------LSLVREGFYE 70 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHH-----------ccCCCHHHHH
Confidence 4589999999999999999987642 3457999999999999987776543221 1111 1234578889
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+++++.+++|+.++++.+.|.+.+++++.||+||||||++|++|. +||
T Consensus 71 ~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~------------------------------ipG 120 (847)
T PRK14989 71 KHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP------------------------------IKG 120 (847)
T ss_pred hCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC------------------------------CCC
Confidence 99999999999999999999999988988999999999999995544 455
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+..+++.+++++++.++++.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++..++++..+.+.+.|+
T Consensus 121 ~~~~~v~~~rt~~d~~~l~~~~~--~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~ 198 (847)
T PRK14989 121 SETQDCFVYRTIEDLNAIEACAR--RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIE 198 (847)
T ss_pred CCCCCeEEECCHHHHHHHHHHHh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHH
Confidence 55667899999999999887765 4789999999999999999999999999999999999887689999999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh-ccccc-CCCcEEeCCCCCCCCCCEEE
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYA 321 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vya 321 (461)
+.||++++++.++++..+.++....+.+++|+++++|.||+|+|++||+++++ .++.. ++|+|.||++|||++|+|||
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYA 278 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYA 278 (847)
T ss_pred HCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEE
Confidence 99999999999999976333455678899999999999999999999999874 45665 57899999999999999999
Q ss_pred eCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC-CeEEEecCCcceEEccCCCCc-----EEE
Q 012545 322 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD-----TVL 395 (461)
Q Consensus 322 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~-----~~~ 395 (461)
+|||+......+ ..+..|..||++||.||++.. ..|... .....+.+++.+..+|...+. .+.
T Consensus 279 iGD~a~~~~~~~------gl~~~a~~~a~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~ 347 (847)
T PRK14989 279 IGECASWNNRVF------GLVAPGYKMAQVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYV 347 (847)
T ss_pred eecceeEcCccc------ccHHHHHHHHHHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEE
Confidence 999998765433 467889999999999999764 223221 112344566666666754432 122
Q ss_pred ecCCccccCCCcEEEEEE--eCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCC-hhhhhcc
Q 012545 396 FGDNDLASATHKFGTYWI--KDGKVVGVFLESGTPEENKAIAKVARVQPSVES-LDVLKNE 453 (461)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 453 (461)
+.+. ....|.|+++ ++++|+|++++|+. .+...+..++.+++++.. .+.|..+
T Consensus 348 ~~~~----~~~~y~Klv~~~~~~~LlGa~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~~ 403 (847)
T PRK14989 348 YLDE----SKEIYKRLIVSEDNKTLLGAVLVGDT-SDYGNLLQLVLNAIELPENPDSLILP 403 (847)
T ss_pred EEcC----CCCEEEEEEEECCCCEEEEEEEECCH-HHHHHHHHHHHcCCCCccchhheecC
Confidence 2221 1457888888 46799999999954 455556666667777753 4455443
No 7
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=5e-49 Score=400.11 Aligned_cols=399 Identities=19% Similarity=0.265 Sum_probs=287.0
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC------CCCCCceee--
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT------ARLPGFHVC-- 69 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~-- 69 (461)
|||..|||+||||||||++||..|+++|++ |+|+|+..... +..|.++|.++..... ....++...
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 788899999999999999999999999987 99999975321 2223334433221100 000011000
Q ss_pred cCCC--------------CCCCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccc
Q 012545 70 VGSG--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
...+ .......++++. +++++.++.+. .+.+++.+ +++++.||++|||||++|.+|++||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~ 153 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGL 153 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCC
Confidence 0000 011233455565 99999885442 35667766 45679999999999999976665554
Q ss_pred cccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC
Q 012545 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214 (461)
Q Consensus 135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 214 (461)
+...+++..+..+.. ..+++++|||+|++|+|+|..|++.|.
T Consensus 154 ------------------------------~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~ 195 (463)
T PRK06370 154 ------------------------------DEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGS 195 (463)
T ss_pred ------------------------------CcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 223344333222211 147899999999999999999999999
Q ss_pred cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCcEEecCEEEEccCCCCChh
Q 012545 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+|+++++.+.+++. +++++.+.+.+.|++.||+++++++|.+++.++++....+... ++.++++|.||+|+|++||++
T Consensus 196 ~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 196 EVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred eEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 99999999999887 7999999999999999999999999999987333322233333 345799999999999999998
Q ss_pred hh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 294 LF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 294 ~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
.+ ..++.. .+|+|.||+++||+.|+|||+|||++.+ .....|..||+.||+||++... ....+.
T Consensus 275 ~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~ 342 (463)
T PRK06370 275 DLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGR--RKVSDR 342 (463)
T ss_pred CcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--CCcccc
Confidence 32 344555 5788999999999999999999999765 4567899999999999987532 124556
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|+..+..+++..+ |.++ |..+.. .+.... ...++|.|+++ ++++|||+|++|+++.+ ++
T Consensus 343 ~~p~~~~~~p~ia~v--G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~ 420 (463)
T PRK06370 343 IVPYATYTDPPLARV--GMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIH 420 (463)
T ss_pred cCCeEEEcCCCcEee--eCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 678877666655544 6553 322221 221111 23567888888 48999999999999888 68
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.++.+|+.+++++|+..+.-+.+++.+
T Consensus 421 ~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 421 EILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred HHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 999999999999998888877777764
No 8
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.4e-48 Score=397.29 Aligned_cols=399 Identities=18% Similarity=0.181 Sum_probs=290.0
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCcccccccCCCC----CCCCCCc---eee
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEG----TARLPGF---HVC 69 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~---~~~ 69 (461)
|++..|||+||||||||++||..|++.|++ |+|+|+++... +..|..++.+..... ....+.+ ...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 777889999999999999999999999987 99999964321 112222332211100 0000000 000
Q ss_pred cCCC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcccccccc
Q 012545 70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTS 133 (461)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g 133 (461)
...+ ......+++++.+++++.+ .+..++.....+...+++ ++.||++|||||++|..|++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~-- 154 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD-- 154 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence 0000 0012234556789999998 566565544445555554 68999999999999944322
Q ss_pred ccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCC
Q 012545 134 IRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN 213 (461)
Q Consensus 134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g 213 (461)
++.+..++++..+ +..+. ..+++++|||+|++|+|+|..|++.|
T Consensus 155 ----------------------------~~~~~~~v~~~~~---~~~~~-----~~~~~v~IiGgG~~g~E~A~~l~~~g 198 (461)
T PRK05249 155 ----------------------------VDFDHPRIYDSDS---ILSLD-----HLPRSLIIYGAGVIGCEYASIFAALG 198 (461)
T ss_pred ----------------------------CCCCCCeEEcHHH---hhchh-----hcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 2223344554332 22221 14789999999999999999999999
Q ss_pred CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 214 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 214 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.+|+++++.+++++. +++++.+.+.+.+++.||++++++++++++.++++ ..+++.+|+++++|.|++|+|++||++
T Consensus 199 ~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 199 VKVTLINTRDRLLSF-LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred CeEEEEecCCCcCCc-CCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCcccc
Confidence 999999999999986 89999999999999999999999999999863332 456678888999999999999999998
Q ss_pred hh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 294 LF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 294 ~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
.+ ..++.. ++|+|.||+++||+.|+|||+|||++.+ .....|..||+.||.+|++.. ....+.
T Consensus 276 ~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~ 342 (461)
T PRK05249 276 GLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEA---TAHLIE 342 (461)
T ss_pred CCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCC---cccccC
Confidence 54 344555 5788999999999999999999999754 457789999999999999643 125667
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|+.+++.++++.+ |.++ |..+. +.....+ ....+|.|+++ ++++|||+|++|+++.+ ++
T Consensus 343 ~~p~~i~~~p~ia~v--G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~ 420 (461)
T PRK05249 343 DIPTGIYTIPEISSV--GKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIH 420 (461)
T ss_pred CCCeEEECCCcceEe--cCCHHHHHHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 899998888877655 5543 22111 2222211 23567888887 57999999999999888 68
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.++.+|+.++|++|+..+.-+.+++.+
T Consensus 421 ~~~~ai~~~~t~~~l~~~~~~~Pt~~e 447 (461)
T PRK05249 421 IGQAIMEQKGTIEYFVNTTFNYPTMAE 447 (461)
T ss_pred HHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 999999999999998777766666653
No 9
>PLN02507 glutathione reductase
Probab=100.00 E-value=5.4e-48 Score=393.27 Aligned_cols=394 Identities=19% Similarity=0.217 Sum_probs=288.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC---------C-C---CCCCCCcccccccCCCCC----CCCCCce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---------A-V---APYERPALSKAYLFPEGT----ARLPGFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~---------~-~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (461)
.||++||||||||+.||..++++|.+ |+|||+. . . +.+..|.++|.++..... .....+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999987 9999962 1 1 112223344554322110 0000000
Q ss_pred eecCCC------------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcc
Q 012545 68 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVS 127 (461)
Q Consensus 68 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~ 127 (461)
...... ........+...+++++.+ ++..+++....|.+.+|+ ++.||+||||||++|.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 000000 0011223445579999998 778888776677777775 5889999999999996
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
.|.+||.+ . .. +.+++..+. . .+++++|||+|++|+|+|.
T Consensus 181 ~p~ipG~~------------------------------~--~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~ 220 (499)
T PLN02507 181 RPNIPGKE------------------------------L--AI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFAS 220 (499)
T ss_pred CCCCCCcc------------------------------c--ee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHH
Confidence 55544421 1 11 233333332 1 3689999999999999999
Q ss_pred HHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 208 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 208 ~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.|++.|.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.++++ ..+.+.+|+++++|.|++++|
T Consensus 221 ~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G 297 (499)
T PLN02507 221 IWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATG 297 (499)
T ss_pred HHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeec
Confidence 999999999999999988886 89999999999999999999999999999863333 457778888999999999999
Q ss_pred CCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCC
Q 012545 288 GRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 288 ~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
++||++++ ..++.. ++|+|.||+++||+.|||||+|||++.+ .....|..||++||+||++...
T Consensus 298 ~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~-- 365 (499)
T PLN02507 298 RAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQP-- 365 (499)
T ss_pred CCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCC--
Confidence 99999863 344555 5688999999999999999999999754 3567899999999999986532
Q ss_pred cccCCCCCCeEEEecCCcceEEccCCC-------CcEEEec--CCccc------cCCCcEEEEEE--eCCEEEEEEEecC
Q 012545 364 TVTGYDYLPYFYSRAFDLSWQFYGDNV-------GDTVLFG--DNDLA------SATHKFGTYWI--KDGKVVGVFLESG 426 (461)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~~~~~~--~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~ 426 (461)
....|..+|+.+++.++++.+ |.++ +..+... ...+. ...++|.|+++ ++++|||+|++|+
T Consensus 366 ~~~~~~~~p~~if~~p~ia~v--Glte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~ 443 (499)
T PLN02507 366 TKPDYENVACAVFCIPPLSVV--GLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGP 443 (499)
T ss_pred CcCCCCCCCeEEECCCccEEE--eCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECC
Confidence 224566789888887777666 5443 1112111 11111 12457888887 5899999999999
Q ss_pred CHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 427 TPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 427 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+ ++.++.+|+.++|++|+..+.-+.+++.+
T Consensus 444 ~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E 477 (499)
T PLN02507 444 DAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477 (499)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHH
Confidence 9877 69999999999999998877777777764
No 10
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.9e-48 Score=393.32 Aligned_cols=396 Identities=21% Similarity=0.244 Sum_probs=288.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C-CCCCcccccccCCCCC----CC-CCCceeecCC-
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P-YERPALSKAYLFPEGT----AR-LPGFHVCVGS- 72 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~-~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~- 72 (461)
|+..|||+||||||||++||..|+++|++ |+|+|++... + ...|.++|.++..... .. .+.+......
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 34579999999999999999999999987 9999997431 1 1223334433322100 00 0000000000
Q ss_pred ----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccc
Q 012545 73 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRS 136 (461)
Q Consensus 73 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~ 136 (461)
.........+++.+++++.+ ++..++ .++|.+ +++++.||+||||||++|.+|.+||.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~- 152 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPDIPGAE- 152 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcc-
Confidence 00011223355679999998 566554 467777 667899999999999999766655532
Q ss_pred cCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 012545 137 KHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV 216 (461)
Q Consensus 137 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~V 216 (461)
.+++. .+...+. ..+++++|||+|++|+|+|..|.+.|.+|
T Consensus 153 -------------------------------~~~~~---~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~V 193 (450)
T PRK06116 153 -------------------------------YGITS---DGFFALE-----ELPKRVAVVGAGYIAVEFAGVLNGLGSET 193 (450)
T ss_pred -------------------------------eeEch---hHhhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 11111 1111110 13689999999999999999999999999
Q ss_pred EEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh-
Q 012545 217 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 217 tli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~- 295 (461)
+++++.+.+++. +++++.+.+.+.|++.||+++++++|++++.++++. ..+.+.+|+++++|.||+|+|++|+++.+
T Consensus 194 tlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~ 271 (450)
T PRK06116 194 HLFVRGDAPLRG-FDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLG 271 (450)
T ss_pred EEEecCCCCccc-cCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCC
Confidence 999999988876 799999999999999999999999999998743442 35778889899999999999999999843
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. ++|+|.||+++||++|+|||+|||++.+ +.+..|..||+.||+||++... .....|..+|
T Consensus 272 l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~p 340 (450)
T PRK06116 272 LENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKP-DEKLDYSNIP 340 (450)
T ss_pred chhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCC-CCcCCcCCCC
Confidence 345555 5788999999999999999999999654 4677899999999999987432 0235677899
Q ss_pred eEEEecCCcceEEccCCC-------Cc-EEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 373 YFYSRAFDLSWQFYGDNV-------GD-TVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~-------~~-~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+.+++.++++.+ |.++ .+ .+.....+ .. ..+++|.|+++ ++++|||+|++|+++.+ ++.
T Consensus 341 ~~if~~p~~a~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~ 418 (450)
T PRK06116 341 TVVFSHPPIGTV--GLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQG 418 (450)
T ss_pred eEEeCCCccEEe--eCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHH
Confidence 988887776666 5443 11 12211111 00 24578899888 47999999999999888 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|+.++|++|+..+.-+.+++.+
T Consensus 419 ~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T PRK06116 419 FAVAIKMGATKADFDNTVAIHPTAAE 444 (450)
T ss_pred HHHHHHCCCCHHHHhcccccCCChHH
Confidence 99999999999998888777777764
No 11
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=4.4e-48 Score=390.87 Aligned_cols=393 Identities=21% Similarity=0.263 Sum_probs=288.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecCC-----
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS----- 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 72 (461)
.|||+||||||||++||..++++|++ |+|+|++.... ...|.++|.++..... .+.+.+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 58999999999999999999999987 99999964321 2223344433322110 111111110000
Q ss_pred ------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCcc
Q 012545 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCL 140 (461)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~ 140 (461)
.........+++.+++++.+ ++..++.....+. .++++++||+||||||++|..|++||..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i~G~~----- 151 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNLPGHE----- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCCCCcc-----
Confidence 00112334456789999987 7777765433332 4567899999999999999666555532
Q ss_pred ccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 141 CCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
. .+ +..++..+. . .+++++|||+|++|+|+|..+++.|.+|++++
T Consensus 152 -------------------------~--~~---~~~~~~~l~----~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~ 196 (446)
T TIGR01424 152 -------------------------L--GI---TSNEAFHLP----T-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIY 196 (446)
T ss_pred -------------------------c--ee---chHHhhccc----c-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEE
Confidence 0 11 112222221 1 37899999999999999999999999999999
Q ss_pred cCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh---hc
Q 012545 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KG 297 (461)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~---~~ 297 (461)
+.+.+++. +++++.+.+.+.|++.||++++++++++++.++++ ..+++.+|+++++|.||+|+|++||++.+ ..
T Consensus 197 ~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~ 273 (446)
T TIGR01424 197 RGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAA 273 (446)
T ss_pred eCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCcccc
Confidence 99998887 79999999999999999999999999999863333 45677788899999999999999999853 34
Q ss_pred cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEE
Q 012545 298 QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYS 376 (461)
Q Consensus 298 ~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~ 376 (461)
++.. ++|+|.||+++||++|+|||+|||++.+ .....|.+||+.||+||++... ....+..+|+.++
T Consensus 274 g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~~i~~~~~--~~~~~~~~p~~if 341 (446)
T TIGR01424 274 GVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRI----------NLTPVAIMEATCFANTEFGNNP--TKFDHDLIATAVF 341 (446)
T ss_pred CeEECCCCcEEeCCCCccCCCCEEEeeccCCCc----------cchhHHHHHHHHHHHHHhcCCC--CccCcCCCCeEEe
Confidence 4555 5688999999999999999999999754 4577899999999999987431 1245667899888
Q ss_pred ecCCcceEEccCCC------C-cEEEec-----CCcc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHH
Q 012545 377 RAFDLSWQFYGDNV------G-DTVLFG-----DNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVA 438 (461)
Q Consensus 377 ~~~~~~~~~~g~~~------~-~~~~~~-----~~~~---~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~ 438 (461)
+.++++.+ |.++ + ..+... .... ....++|.|+++ ++++|||+|++|+++.+ ++.++.+|
T Consensus 342 ~~p~ia~v--G~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai 419 (446)
T TIGR01424 342 SQPPLGTV--GLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIAL 419 (446)
T ss_pred CCchhEEE--ECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 87776666 5443 1 211111 1110 123467888888 58999999999999888 68999999
Q ss_pred HcCCCCCChhhhhccCCCccc
Q 012545 439 RVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++++|++|+..+.-+.+++.+
T Consensus 420 ~~~~t~~~l~~~~~~hPt~~e 440 (446)
T TIGR01424 420 KMGATKADFDSTVGIHPSSAE 440 (446)
T ss_pred HcCCCHHHHhhccccCCChHH
Confidence 999999998888777777765
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=5.9e-48 Score=389.46 Aligned_cols=395 Identities=17% Similarity=0.223 Sum_probs=286.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecC----C
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG----S 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~ 72 (461)
+.|||+||||||||++||..|++.|.+ |+|+|++.... ...|.++|.++..... ...+.+..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF 77 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence 469999999999999999999999987 99999975321 1223334433322110 00011100000 0
Q ss_pred --------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccc-cccccccc
Q 012545 73 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSIT-SLTSIRSK 137 (461)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~-~~~g~~~~ 137 (461)
.........+++.+++++.++... .+.++|.+ +++.+.||++|||||++|.+| .+||.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~-- 151 (450)
T TIGR01421 78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE-- 151 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc--
Confidence 000112334556799999985432 24566666 456799999999999999665 555431
Q ss_pred CccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 012545 138 HCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 217 (461)
Q Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vt 217 (461)
. .+ +.++...+. . .+++++|||+|++|+|+|..|++.|.+|+
T Consensus 152 ----------------------------~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vt 193 (450)
T TIGR01421 152 ----------------------------L--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETH 193 (450)
T ss_pred ----------------------------e--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEE
Confidence 0 01 112221111 1 37899999999999999999999999999
Q ss_pred EEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCCCChhhh-
Q 012545 218 MVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 218 li~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~p~~~~~- 295 (461)
++++.+++++. +++++.+.+.+.|++.||++++++.+++++.+.++ ...+++++| +++++|.|++|+|++||++++
T Consensus 194 li~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~ 271 (450)
T TIGR01421 194 LVIRHERVLRS-FDSMISETITEEYEKEGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLG 271 (450)
T ss_pred EEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCC
Confidence 99999999876 89999999999999999999999999999863333 245777788 579999999999999999853
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. .+|+|.||+++||++|+|||+|||++.+ ..+..|..||+.||+||++... .....|..+|
T Consensus 272 l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~p 340 (450)
T TIGR01421 272 LENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKT-DDKLDYNNVP 340 (450)
T ss_pred ccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCC-CCccCcccCC
Confidence 345555 5788999999999999999999999765 3567899999999999986431 1235677899
Q ss_pred eEEEecCCcceEEccCCC-------Cc-EEEe--cCCccc------cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 373 YFYSRAFDLSWQFYGDNV-------GD-TVLF--GDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~-------~~-~~~~--~~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+..++.++++.+ |.++ |. .+.. ...... ...++|.|+++ ++|+|||+|++|+++.+ ++.
T Consensus 341 ~~~f~~p~ia~v--Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~ 418 (450)
T TIGR01421 341 TVVFSHPPIGTI--GLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQG 418 (450)
T ss_pred eEEeCCCceEEE--eCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHH
Confidence 988887777666 5443 21 1111 111111 23567888877 48999999999999988 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
++.+|++++|++|+..+.-+.+++++.
T Consensus 419 ~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T TIGR01421 419 FAVAIKMGATKADFDNTVAIHPTSSEE 445 (450)
T ss_pred HHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 999999999999988888788877653
No 13
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.5e-46 Score=399.18 Aligned_cols=382 Identities=24% Similarity=0.368 Sum_probs=308.5
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcCc
Q 012545 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (461)
Q Consensus 8 vvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (461)
|||||+|+||++||.+|++.+....+|+||++++..+|.++.++..+........+ .....+++++.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l-----------~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDI-----------TLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHc-----------cCCCHHHHHHCCC
Confidence 69999999999999999987644567999999999999988776532211111111 2345788999999
Q ss_pred EEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCC
Q 012545 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAK 167 (461)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 167 (461)
+++++++|+.++++.+.|.+.+++++.||+||+|||+.|+.|+ +||.+.+
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~------------------------------ipG~~~~ 119 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP------------------------------IPGADKK 119 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC------------------------------CCCCCCC
Confidence 9999999999999999999999988999999999999995443 4555667
Q ss_pred CEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCc
Q 012545 168 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247 (461)
Q Consensus 168 ~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV 247 (461)
+++.+++++++.++++.+. ..++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++...+.+.+.+++.||
T Consensus 120 ~v~~~rt~~d~~~i~~~~~--~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV 197 (785)
T TIGR02374 120 GVYVFRTIEDLDAIMAMAQ--RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGL 197 (785)
T ss_pred CEEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCC
Confidence 7999999999999888765 47899999999999999999999999999999999998877899999999999999999
Q ss_pred EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEeCccc
Q 012545 248 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVA 326 (461)
Q Consensus 248 ~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~ 326 (461)
++++++.++++.. ++....|+++||+++++|.||+++|.+|+.++++. ++..+ |+|.||++|||++|+|||+|||+
T Consensus 198 ~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a 274 (785)
T TIGR02374 198 TFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECA 274 (785)
T ss_pred EEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecc
Confidence 9999999999975 45567889999999999999999999999998753 45544 78999999999999999999999
Q ss_pred ccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC-eEEEecCCcceEEccCCCCc----EEEecCCcc
Q 012545 327 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP-YFYSRAFDLSWQFYGDNVGD----TVLFGDNDL 401 (461)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~ 401 (461)
..+...+ ..+..|..||+++|.||++... ..|...+ ....+.+++.+...|..... .+.+.+..
T Consensus 275 ~~~~~~~------gl~~~a~~qa~vaA~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~- 343 (785)
T TIGR02374 275 EHNGRVY------GLVAPLYEQAKVLADHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ- 343 (785)
T ss_pred eeCCccc------ccHHHHHHHHHHHHHHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC-
Confidence 8765433 4678899999999999997531 2333322 33456678877777854321 22232221
Q ss_pred ccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 012545 402 ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 450 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 450 (461)
...|.++++++++|+|++++| .+.+...+..++.++.++.+...|
T Consensus 344 ---~~~y~kl~~~~~rLlGavlvg-d~~~~~~L~~li~~~~~l~~~~~l 388 (785)
T TIGR02374 344 ---KGIYKKLVLSDDKLLGAVLFG-DTSDYGRLLDMVLKQADISEDPAI 388 (785)
T ss_pred ---CCEEEEEEEECCEEEEEEEEC-CHHHHHHHHHHHHcCCCCCcChhh
Confidence 446888999999999999998 456788899999988877653333
No 14
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9.2e-48 Score=390.25 Aligned_cols=395 Identities=19% Similarity=0.230 Sum_probs=280.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCC-CcccccccCCCCC----CCCCCceeecCC-
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYER-PALSKAYLFPEGT----ARLPGFHVCVGS- 72 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~- 72 (461)
|+.+|||+||||||||++||..|++.|.+ |+|||+.+.. +..+ |.++|.++..... .....+......
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 45679999999999999999999999987 9999987432 2222 3334433321100 000000000000
Q ss_pred ----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEecCEEEEccCCCccccccc
Q 012545 73 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 73 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~liiAtG~~~~~~~~~ 132 (461)
........+++..||+++.+ .+..++ .+++ ...+| .++.||+||||||++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~----- 149 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPI----- 149 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCC-----
Confidence 00011223456679999997 444444 4444 44455 46899999999999993
Q ss_pred cccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC
Q 012545 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 212 (461)
Q Consensus 133 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~ 212 (461)
.+|. +++ +.+++++. .++..+. ..+++++|||+|++|+|+|..|++.
T Consensus 150 ----------------------~~p~--~~~-~~~~v~~~---~~~~~~~-----~~~~~vvIiGgG~iG~E~A~~l~~~ 196 (471)
T PRK06467 150 ----------------------QLPF--IPH-DDPRIWDS---TDALELK-----EVPKRLLVMGGGIIGLEMGTVYHRL 196 (471)
T ss_pred ----------------------CCCC--CCC-CCCcEECh---HHhhccc-----cCCCeEEEECCCHHHHHHHHHHHHc
Confidence 2221 222 22334432 3333321 1468999999999999999999999
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC--C--cEEecCEEEEccCC
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGG 288 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G--~~i~aD~vi~a~G~ 288 (461)
|.+||++++.+++++. +++++.+.+.+.|++. |++++++++++++..+++ ..+++.+ | +++++|.||+|+|+
T Consensus 197 G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 197 GSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred CCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecc
Confidence 9999999999999987 8999999999999998 999999999999863333 3455443 2 46999999999999
Q ss_pred CCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCc
Q 012545 289 RPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 364 (461)
Q Consensus 289 ~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 364 (461)
+||++++ ..++.. ++|+|.||+++||++|+|||+|||++.+ ..+..|..||+.||.+|++.. .
T Consensus 273 ~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~---~ 339 (471)
T PRK06467 273 VPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKK---H 339 (471)
T ss_pred cccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCC---C
Confidence 9999854 334555 5788999999999999999999999754 457789999999999999753 2
Q ss_pred ccCCCCCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCH
Q 012545 365 VTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTP 428 (461)
Q Consensus 365 ~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~ 428 (461)
...+..+|+.++..++++.+ |.++ |..+. +.+...+ ...++|.|+++ ++++|||+|++|+++
T Consensus 340 ~~~~~~~p~~~~~~p~ia~v--Glte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a 417 (471)
T PRK06467 340 YFDPKVIPSIAYTEPEVAWV--GLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNA 417 (471)
T ss_pred CCCCCCCCeEEECCCceeEE--ECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 25566788877655555444 6554 22121 1111111 23567888888 479999999999999
Q ss_pred HH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 429 EE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 429 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+ ++.++.+|+.++|++|+..+.-+.++|.+
T Consensus 418 ~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e 449 (471)
T PRK06467 418 GELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 449 (471)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 88 68999999999999998888777777653
No 15
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=7.1e-46 Score=367.52 Aligned_cols=363 Identities=21% Similarity=0.329 Sum_probs=283.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
+|+||||||+||+++|..|++.+ ++.+|+||++++..+|.+|.++..+........+. .....++++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~ 71 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDLT----------RQSAGEFAEQF 71 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhh----------cCCHHHHHHhC
Confidence 58999999999999999999875 46789999999988898887654333211111110 11345677889
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCC
Q 012545 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD 165 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 165 (461)
+++++.+++|+.++++.+.+.+ ++.++.||+||+|||+.|..|+ ++|.+
T Consensus 72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~------------------------------i~G~~ 120 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP------------------------------IPGRE 120 (377)
T ss_pred CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC------------------------------CCCCc
Confidence 9999999899999998888876 5567999999999999995443 34433
Q ss_pred CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhc
Q 012545 166 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 245 (461)
Q Consensus 166 ~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (461)
. +++++++.++..+.+.+. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.
T Consensus 121 ~--v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~ 196 (377)
T PRK04965 121 L--MLTLNSQQEYRAAETQLR--DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEM 196 (377)
T ss_pred e--EEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhC
Confidence 2 788888888888877665 478999999999999999999999999999999999888767899999999999999
Q ss_pred CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-ccccCCCcEEeCCCCCCCCCCEEEeCc
Q 012545 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGD 324 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD 324 (461)
||+++++++++++..+ +....+.+.+|+++++|.||+|+|.+|+.++++. ++..++ +|.||++|||+.|+|||+||
T Consensus 197 gV~i~~~~~v~~i~~~--~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD 273 (377)
T PRK04965 197 GVHLLLKSQLQGLEKT--DSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGD 273 (377)
T ss_pred CCEEEECCeEEEEEcc--CCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeee
Confidence 9999999999999863 2234678899999999999999999999988754 455554 59999999999999999999
Q ss_pred ccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe-EEEecCCcceEEccCCCCcEEEecCCcccc
Q 012545 325 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDTVLFGDNDLAS 403 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 403 (461)
|+..... ..+.+..|..||+.+|+||.+.. ..|...+. ...+.+++.+..+|...++...+...+ .
T Consensus 274 ~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~ 340 (377)
T PRK04965 274 CAEINGQ------VLPFLQPIQLSAMALAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINA--E 340 (377)
T ss_pred cEeECCc------eeehHHHHHHHHHHHHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEe--C
Confidence 9986532 12567789999999999999864 23443332 334567888888887654221111001 1
Q ss_pred CCCcEEEEEEeCCEEEEEEEecCCHHH
Q 012545 404 ATHKFGTYWIKDGKVVGVFLESGTPEE 430 (461)
Q Consensus 404 ~~~~~~~~~~~~~~i~G~~~~g~~~~~ 430 (461)
....|.++++++|+|+|+.++|+....
T Consensus 341 ~~~~~~~~~~~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 341 SQGMVAKGVDEAGQLRAFVVSEDRMKE 367 (377)
T ss_pred CCCeEEEEEccCCcEEEEEEEChhHHH
Confidence 134577888899999999999976544
No 16
>PLN02546 glutathione reductase
Probab=100.00 E-value=4.8e-47 Score=387.80 Aligned_cols=392 Identities=21% Similarity=0.237 Sum_probs=285.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC----------CC---CCCCCCcccccccCCCCC----CCCCCce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----------AV---APYERPALSKAYLFPEGT----ARLPGFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~----------~~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (461)
.|||+|||+|+||+.||..++++|.+ |+|+|+. .. +.+..|.++|.++..... .....+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 58999999999999999999999987 9999961 11 122234445554432211 0111111
Q ss_pred eecCC------------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccc
Q 012545 68 VCVGS------------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 68 ~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 129 (461)
..... .....+...+++.+++++.+ ++..++. +++.+ +|+++.||+||||||++|.+|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 10000 00112334456679999997 6666654 45665 567799999999999999766
Q ss_pred ccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHH
Q 012545 130 SLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 209 (461)
Q Consensus 130 ~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l 209 (461)
+|||++ .++ +.+++..+. ..+++++|||+|++|+|+|..|
T Consensus 232 ~IpG~~--------------------------------~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L 271 (558)
T PLN02546 232 DIPGIE--------------------------------HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIF 271 (558)
T ss_pred CCCChh--------------------------------hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHH
Confidence 665542 111 222222221 1478999999999999999999
Q ss_pred HHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 210 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 210 ~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
...|.+|+++++.+.+++. +++++.+.+.+.|+++||++++++.+.++..++++. ..+.+.+++...+|.|++++|++
T Consensus 272 ~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~-v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 272 NGLKSDVHVFIRQKKVLRG-FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGS-LSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HhcCCeEEEEEeccccccc-cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCE-EEEEECCeEEEecCEEEEeeccc
Confidence 9999999999999998886 899999999999999999999999999998643443 34666666555689999999999
Q ss_pred CChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcc
Q 012545 290 PLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV 365 (461)
Q Consensus 290 p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 365 (461)
||++++ ..++.. ++|+|.||+++||++|+|||+|||++.+ ..+..|..||+.+|.||++... ..
T Consensus 350 Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~--~~ 417 (558)
T PLN02546 350 PNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEP--TK 417 (558)
T ss_pred cCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCC--Cc
Confidence 999853 345666 5688999999999999999999999764 4577899999999999997532 12
Q ss_pred cCCCCCCeEEEecCCcceEEccCCC------CcEEE--ecCCccc------cCCCcEEEEEE--eCCEEEEEEEecCCHH
Q 012545 366 TGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL--FGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPE 429 (461)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~--~~~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~~~~ 429 (461)
..|..+|+.+++.++++.+ |.++ |..+. .....+. ...++|+|+++ ++++|||+|++|+++.
T Consensus 418 ~~~~~vp~~vft~Peia~V--Glte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~ 495 (558)
T PLN02546 418 PDYRAVPSAVFSQPPIGQV--GLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAP 495 (558)
T ss_pred CCCCCCCEEEeCCchHhhc--cCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHH
Confidence 4677899888877776666 5443 11111 1111110 13467888887 5899999999999998
Q ss_pred H-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 430 E-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 430 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+ ++.++.+|++++|++|+..+.-+.+++++
T Consensus 496 elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E 526 (558)
T PLN02546 496 EIIQGFAVAVKAGLTKADFDATVGIHPTAAE 526 (558)
T ss_pred HHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 8 69999999999999998887777777654
No 17
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-46 Score=382.55 Aligned_cols=397 Identities=18% Similarity=0.211 Sum_probs=285.9
Q ss_pred CCC-CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--CCCC-CcccccccCCCC----CC------CCC--
Q 012545 1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--PYER-PALSKAYLFPEG----TA------RLP-- 64 (461)
Q Consensus 1 Mm~-~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~~~~-~~~~~~~~~~~~----~~------~~~-- 64 (461)
||+ +.|||+|||||+||++||..|++.|.+ |+|||++... +.++ |.+++.++.... .. .++
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 554 579999999999999999999999987 9999997532 1222 223443321110 00 000
Q ss_pred --CceeecCC----C----CCC-CCHhHHHH-cCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCccccc
Q 012545 65 --GFHVCVGS----G----GER-LLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITS 130 (461)
Q Consensus 65 --~~~~~~~~----~----~~~-~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~ 130 (461)
.+.+..-. . ... .....++. .+++++.+ ++..++.....|.+.++ .+++||+||||||++|..|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 00000000 0 000 01222333 38999998 78888888778887776 36999999999999997666
Q ss_pred cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH
Q 012545 131 LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 210 (461)
Q Consensus 131 ~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~ 210 (461)
+||+.+ ..+++. .+...+. . .+++++|||+|++|+|+|..|+
T Consensus 157 i~G~~~------------------------------~~~~~~---~~~~~l~----~-~~~~vvViG~G~~G~E~A~~l~ 198 (468)
T PRK14694 157 VPGLAE------------------------------TPYLTS---TSALELD----H-IPERLLVIGASVVALELAQAFA 198 (468)
T ss_pred CCCCCC------------------------------CceEcc---hhhhchh----c-CCCeEEEECCCHHHHHHHHHHH
Confidence 666431 122222 1222221 1 3789999999999999999999
Q ss_pred HCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 211 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 211 ~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+.|.+|+++++ +++++. +++++.+.+.+.|++.||++++++++++++.+ +....+.+.++ ++++|.|++|+|++|
T Consensus 199 ~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~--~~~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 199 RLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFRREGIEVLKQTQASEVDYN--GREFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred HcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEEECCC-EEEeCEEEEccCCCC
Confidence 99999999987 466665 79999999999999999999999999999862 33334555554 799999999999999
Q ss_pred Chhhh---hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccC
Q 012545 291 LISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 367 (461)
Q Consensus 291 ~~~~~---~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 367 (461)
|++++ ..++..++|+|.||+++||++|+|||+|||++.+ ..+..|..||+.||.||++... ...
T Consensus 274 n~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~ 340 (468)
T PRK14694 274 NTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLD 340 (468)
T ss_pred CcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccc
Confidence 99865 2345556788999999999999999999999865 3567788999999999986532 255
Q ss_pred CCCCCeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-
Q 012545 368 YDYLPYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE- 430 (461)
Q Consensus 368 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~- 430 (461)
+..+|.+.++.++++.+ |.++ |..+ .+...... ..+++|.|+++ ++++|||+|++|+++.+
T Consensus 341 ~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~ 418 (468)
T PRK14694 341 LSAMPEVIFTDPQVATV--GLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGEL 418 (468)
T ss_pred cCCCCeEEECCCCeEEe--eCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHH
Confidence 66788887766655555 6554 2211 12211111 23567899887 58999999999998888
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 431 NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.++.+|+.++|++||..+.-+.+++++
T Consensus 419 i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (468)
T PRK14694 419 IQTAVMALRARMTVNEIADELFPYLTMVE 447 (468)
T ss_pred HHHHHHHHHCCCCHHHHhccccCCCchHH
Confidence 68999999999999998888777777764
No 18
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.1e-47 Score=382.71 Aligned_cols=396 Identities=18% Similarity=0.229 Sum_probs=281.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCC-CcccccccCCCCCCCCCCceeecCC------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YER-PALSKAYLFPEGTARLPGFHVCVGS------ 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (461)
+.|||+|||||+||++||..|+++|.+ |+|||+++... ..+ |..++.++.... ....+......
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~--~~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--QHTDFVRAIQRKNEVVN 76 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhc--cCCCHHHHHHHHHHHHH
Confidence 479999999999999999999999987 99999975311 111 222232222211 00011000000
Q ss_pred CCCC-CCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc-EEecCEEEEccCCCccccccccccccCccccccccCCcc
Q 012545 73 GGER-LLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPL 150 (461)
Q Consensus 73 ~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~ 150 (461)
.... ...++.+..+++++.+ ++..++.....|...++. ++.||+||+|||++|.+|.+||+.+
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~-------------- 141 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITT-------------- 141 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccC--------------
Confidence 0000 0112223348999887 677777655556666664 6999999999999997666666421
Q ss_pred cccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCccc
Q 012545 151 FQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 230 (461)
Q Consensus 151 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~ 230 (461)
.+++++...+. .+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +
T Consensus 142 ---------------~~~v~~~~~~~---~~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~ 197 (441)
T PRK08010 142 ---------------TPGVYDSTGLL---NL----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-E 197 (441)
T ss_pred ---------------CCCEEChhHhh---cc----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-c
Confidence 22344332222 11 1 14789999999999999999999999999999999999887 6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh---hccccc-CCCcE
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGI 306 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~---~~~~~~-~~g~i 306 (461)
++++.+.+.+.|++.||++++++++++++.+ ++. ..+.++++ ++++|.|++|+|++||++++ ..++.. ++|+|
T Consensus 198 ~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i 274 (441)
T PRK08010 198 DRDIADNIATILRDQGVDIILNAHVERISHH-ENQ-VQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAI 274 (441)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcE
Confidence 9999999999999999999999999999863 332 34555555 69999999999999999754 344555 56899
Q ss_pred EeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEc
Q 012545 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY 386 (461)
Q Consensus 307 ~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 386 (461)
.||+++||++|+|||+|||++.+ .....|..+|+.++.||++... .....+..+|+..++.++++.+
T Consensus 275 ~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~a~~~~~~~~~~~~g~~~-~~~~~~~~~p~~~~~~p~ia~v-- 341 (441)
T PRK08010 275 VVDKYLHTTADNIWAMGDVTGGL----------QFTYISLDDYRIVRDELLGEGK-RSTDDRKNVPYSVFMTPPLSRV-- 341 (441)
T ss_pred EECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCC-cccCccCCCCEEEECCCCceee--
Confidence 99999999999999999999876 3456688899999999986421 1124556788877666666555
Q ss_pred cCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhh
Q 012545 387 GDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDV 449 (461)
Q Consensus 387 g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~ 449 (461)
|.++ |..+. +.+.... ..+.+|.|+++ ++|+|||+|++|+++.+ ++.++.+|++++|++++..
T Consensus 342 Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~ 421 (441)
T PRK08010 342 GMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRD 421 (441)
T ss_pred eCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence 6554 22111 1222221 23456888887 58999999999999888 6999999999999999887
Q ss_pred hhccCCCccc
Q 012545 450 LKNEGLSFAS 459 (461)
Q Consensus 450 l~~~~~~~~~ 459 (461)
..-+.+++++
T Consensus 422 ~~~~hPt~~e 431 (441)
T PRK08010 422 QIFTHPSMSE 431 (441)
T ss_pred ccccCCchHH
Confidence 6666666654
No 19
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.3e-46 Score=381.68 Aligned_cols=395 Identities=21% Similarity=0.257 Sum_probs=288.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecC------C
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG------S 72 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~ 72 (461)
+|++|||+|++|+.||..++++|.+ |+|+|++.... ...|.++|.++..... .....+..... .
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 4899999999999999999999987 99999976421 2234445554422100 00000000000 0
Q ss_pred --------------CCCCCCHhHHHHcCcEEEcCCeEEEEe--CCCCE--EEcCCCc--EEecCEEEEccCCCccccccc
Q 012545 73 --------------GGERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~liiAtG~~~~~~~~~ 132 (461)
.......+.+++++++++.+ ++..++ .+.++ |...+|+ ++.||+||+|||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~----- 152 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR----- 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC-----
Confidence 00112335566789999998 555533 33444 4445564 6999999999999993
Q ss_pred cccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC
Q 012545 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 212 (461)
Q Consensus 133 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~ 212 (461)
.+| .++.+...++++.++.+... .+++++|||+|++|+|+|..|++.
T Consensus 153 ----------------------~~p---~~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~ 199 (466)
T PRK07845 153 ----------------------ILP---TAEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTEL 199 (466)
T ss_pred ----------------------CCC---CCCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHc
Confidence 222 22223345666554443322 368999999999999999999999
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
|.+|+++++.+++++. +++++.+.+.+.|+++||++++++++++++.++++ ..+.+.+|+++++|.|++++|++||+
T Consensus 200 g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 200 GVKVTLVSSRDRVLPG-EDADAAEVLEEVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred CCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCC
Confidence 9999999999999987 79999999999999999999999999999763333 35777889999999999999999999
Q ss_pred hhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCC
Q 012545 293 SLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368 (461)
Q Consensus 293 ~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 368 (461)
+.+ +.++.. ++|+|.||+++||+.|+|||+|||++.+ +.+..|..||+.|+.|+++... ....+
T Consensus 277 ~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~ 344 (466)
T PRK07845 277 AGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRL 344 (466)
T ss_pred CCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCC
Confidence 853 445665 5688999999999999999999999764 5688899999999999996431 12456
Q ss_pred CCCCeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-H
Q 012545 369 DYLPYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-N 431 (461)
Q Consensus 369 ~~~p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~ 431 (461)
..+|..+++.++++.+ |.++ |..+ .+.+...+ ..+++|.|+++ ++|+|||+|++|+++.+ +
T Consensus 345 ~~~p~~vf~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i 422 (466)
T PRK07845 345 KTVASNVFTRPEIATV--GVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELI 422 (466)
T ss_pred CCCCEEEeCCCcceee--cCCHHHHHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence 7788877776766655 5443 2111 12221111 23567898887 57999999999999988 6
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 432 KAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.++.+|++++|++||..+.-+.++|.+
T Consensus 423 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e 450 (466)
T PRK07845 423 LPIALAVQNRLTVDDLAQTFTVYPSLSG 450 (466)
T ss_pred HHHHHHHHcCCCHHHHhcCcCCCCCHHH
Confidence 8999999999999998877767777654
No 20
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=4e-46 Score=380.76 Aligned_cols=403 Identities=18% Similarity=0.204 Sum_probs=285.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCCCCC------CCceeecCC--
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTARL------PGFHVCVGS-- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 72 (461)
..||++|||||+||++||..+++.|.+ |+|||++... ....|.++|.++........ .++......
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 368999999999999999999999987 9999997432 12334455655543321110 011100000
Q ss_pred ------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEE----------------------------cCCCcE
Q 012545 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLL----------------------------SATGLI 112 (461)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~----------------------------~~~~~~ 112 (461)
.......+.+++.||+++.+.... . +.++|. ..++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f-~--~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSL-L--SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEE-e--cCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 001122344566899999985321 1 222221 245678
Q ss_pred EecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCc
Q 012545 113 FKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 192 (461)
Q Consensus 113 ~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~ 192 (461)
++||++|||||++|.+|++|| .+ .+++ .++...+ . .+++
T Consensus 201 i~ad~lVIATGS~P~~P~IpG------------------------------~~--~v~t---s~~~~~l----~--~pk~ 239 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPDVKG------------------------------KE--FTIS---SDDFFKI----K--EAKR 239 (561)
T ss_pred EECCEEEEecCCCCCCCCCCC------------------------------ce--eEEE---HHHHhhc----c--CCCE
Confidence 999999999999996554444 21 1222 2232222 1 3789
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC
Q 012545 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~ 272 (461)
++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++.+.+++.++++.+ .+.+.
T Consensus 240 VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~ 317 (561)
T PTZ00058 240 IGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLS 317 (561)
T ss_pred EEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEEC
Confidence 999999999999999999999999999999998876 7999999999999999999999999999986333333 34443
Q ss_pred C-CcEEecCEEEEccCCCCChhhhhc---ccccCCCcEEeCCCCCCCCCCEEEeCcccccCcc-----------------
Q 012545 273 D-GRTLEADIVVVGVGGRPLISLFKG---QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK----------------- 331 (461)
Q Consensus 273 ~-G~~i~aD~vi~a~G~~p~~~~~~~---~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----------------- 331 (461)
+ ++++++|.|++|+|++||++.+.. ++..++|+|.||+++||++|+|||+|||++.+..
T Consensus 318 ~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~ 397 (561)
T PTZ00058 318 DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPY 397 (561)
T ss_pred CCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccc
Confidence 4 457999999999999999987742 2233678999999999999999999999984321
Q ss_pred ------ccCcce-eeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCC-------Cc-EEEe
Q 012545 332 ------LYREMR-RVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD-TVLF 396 (461)
Q Consensus 332 ------~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~-~~~~ 396 (461)
..+... ..+....|.+||++||.||++.... ...|..+|+.+++.++++.+ |.++ |. .+..
T Consensus 398 ~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~ 473 (561)
T PTZ00058 398 LKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKI 473 (561)
T ss_pred cccccccccccccCcCchHHHHHHHHHHHHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEE
Confidence 122222 3577889999999999999975321 24567789887777776666 5443 21 1211
Q ss_pred c--CCc----------cccCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 397 G--DND----------LASATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 397 ~--~~~----------~~~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
. ... +....++|.|+++ ++|+|||+|++|+++.+ ++.++.+|+++++++|+..+.-+.+++++
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e 551 (561)
T PTZ00058 474 YESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAE 551 (561)
T ss_pred EEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHH
Confidence 1 111 1112457888877 58999999999999988 68999999999999998887777777764
No 21
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-46 Score=381.26 Aligned_cols=396 Identities=26% Similarity=0.335 Sum_probs=282.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCCC----CCCCceeecCC----
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTA----RLPGFHVCVGS---- 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---- 72 (461)
..|||+||||||||++||..|+++|++ |+|+|++.... +..|.+++.++...... ....+......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 479999999999999999999999987 99999986321 22233344433221110 00000000000
Q ss_pred -------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC-CcEEecCEEEEccCCCccccccccccccC
Q 012545 73 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 73 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
.........+++.+++++.+ ++..++.....+...+ ++++.||+||+|||++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~----------- 147 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR----------- 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC-----------
Confidence 00011233455689999998 5666655444444322 367999999999999993
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
.+|. ++ .....+++. +++..+. . .+++++|||+|++|+|+|..|++.|.+|++
T Consensus 148 ----------------~~pg--~~-~~~~~v~~~---~~~~~~~----~-~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl 200 (462)
T PRK06416 148 ----------------ELPG--IE-IDGRVIWTS---DEALNLD----E-VPKSLVVIGGGYIGVEFASAYASLGAEVTI 200 (462)
T ss_pred ----------------CCCC--CC-CCCCeEEcc---hHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 2221 11 111224333 3333321 1 468999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEEEccCCCCChhhh
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+++.+++++. +++++.+.+.+.|++.||+++++++|++++.+++ ...+.+.+| +++++|.||+|+|++|+++++
T Consensus 201 i~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 201 VEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD--GVTVTLEDGGKEETLEADYVLVAVGRRPNTENL 277 (462)
T ss_pred EEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCC
Confidence 9999999887 7999999999999999999999999999987332 235666665 679999999999999999865
Q ss_pred ---hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 ---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 ---~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++..++|+|.||+++||+.|+|||+|||+..+ +.+..|..||+.||.||++.. ...++..+|
T Consensus 278 ~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~---~~~~~~~~~ 344 (462)
T PRK06416 278 GLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNP---HPIDYRGIP 344 (462)
T ss_pred CchhcCCeecCCEEeECCCCccCCCCEEEeeecCCCc----------chHHHHHHHHHHHHHHHcCCC---CCCCCCCCC
Confidence 3445556788999999999999999999999754 467889999999999999743 123355677
Q ss_pred eEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIA 435 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~ 435 (461)
.+....++ +..+|.++ |..+. +...... ...++|.|+++ ++++|||+|++|+++.+ ++.++
T Consensus 345 ~~~~~~~~--~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~ 422 (462)
T PRK06416 345 AVTYTHPE--VASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQ 422 (462)
T ss_pred eEEECCCc--eEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Confidence 76554444 45556654 22111 1111111 23567888877 58999999999999888 68999
Q ss_pred HHHHcCCCCCChhhhhccCCCccc
Q 012545 436 KVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+|+.++|++||..+.-+.+++++
T Consensus 423 ~ai~~~~t~~~l~~~~~~hPt~~e 446 (462)
T PRK06416 423 LAINWEATPEDLALTIHPHPTLSE 446 (462)
T ss_pred HHHHCCCCHHHHhhCccCCCCHHH
Confidence 999999999998888777777654
No 22
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=2.6e-46 Score=377.27 Aligned_cols=392 Identities=18% Similarity=0.235 Sum_probs=281.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC----CCCCCceeecC------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVG------ 71 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------ 71 (461)
.||++||||||+|..||.. ..|.+ |+|||++... .+..|.++|.++..... ...+.+.....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 4899999999999988865 35776 9999997542 23334455544422211 00000000000
Q ss_pred -----------CCCCC-CCHhH-HHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccC
Q 012545 72 -----------SGGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 72 -----------~~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
..... ....+ ++..+++++.+. ...+ +.++|.+.+++++.||++|||||++|.+|++||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~---- 148 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GPKTLRTGDGEEITADQVVIAAGSRPVIPPVIAD---- 148 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCc----
Confidence 00011 12233 667899999984 4333 5788888878789999999999999965554442
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
+...++ +.+++..+.. .+++++|||+|++|+|+|..|++.|.+|++
T Consensus 149 --------------------------~~~~~~---~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 194 (451)
T PRK07846 149 --------------------------SGVRYH---TSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTV 194 (451)
T ss_pred --------------------------CCccEE---chHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 222232 3334433321 378999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh---
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF--- 295 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~--- 295 (461)
+++.+++++. +++++.+.+.+.+ +.||++++++++++++.+ ++ ...+.+.+|+++++|.|++|+|++||++++
T Consensus 195 i~~~~~ll~~-~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~ 270 (451)
T PRK07846 195 VNRSGRLLRH-LDDDISERFTELA-SKRWDVRLGRNVVGVSQD-GS-GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAA 270 (451)
T ss_pred EEcCCccccc-cCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc-CC-EEEEEECCCcEeecCEEEEEECCccCccccCch
Confidence 9999999876 7999998887655 568999999999999863 22 245777888899999999999999999875
Q ss_pred hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeE
Q 012545 296 KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYF 374 (461)
Q Consensus 296 ~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~ 374 (461)
..++.. ++|+|.||+++||++|+|||+|||++.+ +....|.+||+++++||++.... ....+..+|+.
T Consensus 271 ~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~ 339 (451)
T PRK07846 271 AAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAA 339 (451)
T ss_pred hcCceECCCCcEeECCCcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeE
Confidence 334665 5788999999999999999999999865 34567889999999999865211 12466778998
Q ss_pred EEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHH
Q 012545 375 YSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKV 437 (461)
Q Consensus 375 ~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~ 437 (461)
+++.++++.+ |.++ |..+. +.+.... ...++|.|+++ ++++|||+|++|+++.+ ++.++.+
T Consensus 340 if~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~a 417 (451)
T PRK07846 340 VFTHPQIASV--GLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQA 417 (451)
T ss_pred EECCCCcEeE--eCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 8876766655 5544 22221 1221111 23567888887 57999999999999888 6899999
Q ss_pred HHcCCCCCChhhhh-ccCCCccc
Q 012545 438 ARVQPSVESLDVLK-NEGLSFAS 459 (461)
Q Consensus 438 ~~~~~~~~~~~~l~-~~~~~~~~ 459 (461)
|++++|++||..+. -+.++|.+
T Consensus 418 i~~~~t~~~l~~~~~~~hPt~~e 440 (451)
T PRK07846 418 MSFGLDAREMARGQYWIHPALPE 440 (451)
T ss_pred HHcCCCHHHHhhCCCccCCcHHH
Confidence 99999999987653 46666654
No 23
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.3e-46 Score=380.67 Aligned_cols=395 Identities=20% Similarity=0.249 Sum_probs=283.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCC---------CC---CCCCCCcccccccCCCCC----CCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE---------AV---APYERPALSKAYLFPEGT----ARLPG 65 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~---------~~---~~~~~~~~~~~~~~~~~~----~~~~~ 65 (461)
++.||++|||||++|..||..++++ |.+ |+|||++ .. +....|.++|.++..... .+...
T Consensus 1 ~~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~ 77 (486)
T TIGR01423 1 SKAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAG 77 (486)
T ss_pred CCccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999997 777 9999973 11 112234455555533311 01111
Q ss_pred ceeecC--C---C--------------CCCCCHhHHHH-cCcEEEcCCeEEEEeCCCCEEEcCC--------CcEEecCE
Q 012545 66 FHVCVG--S---G--------------GERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQI 117 (461)
Q Consensus 66 ~~~~~~--~---~--------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~ 117 (461)
+..... . + ......++++. .+++++.+. ..- .+.++|.+.+ .+++.||+
T Consensus 78 ~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~f--~~~~~v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 78 FGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GAL--EDKNVVLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred cCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EEE--ccCCEEEEeeccCCCCCcceEEECCE
Confidence 110000 0 0 00112233444 489999984 332 3456665531 24799999
Q ss_pred EEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEEC
Q 012545 118 LVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVG 197 (461)
Q Consensus 118 liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG 197 (461)
||||||++|..|++||++ .++ +.+++..+ . ..+++++|||
T Consensus 155 lIIATGs~p~~p~i~G~~--------------------------------~~~---~~~~~~~~----~-~~~~~vvIIG 194 (486)
T TIGR01423 155 ILLATGSWPQMLGIPGIE--------------------------------HCI---SSNEAFYL----D-EPPRRVLTVG 194 (486)
T ss_pred EEEecCCCCCCCCCCChh--------------------------------hee---chhhhhcc----c-cCCCeEEEEC
Confidence 999999999666555532 122 12222221 1 1478999999
Q ss_pred CCHHHHHHHHHHHHC---CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC
Q 012545 198 GGYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 274 (461)
Q Consensus 198 ~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G 274 (461)
+|++|+|+|..+..+ |.+|+++++.+++++. +++++.+.+.+.|++.||++++++.++++..++++ ...+++.+|
T Consensus 195 gG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g 272 (486)
T TIGR01423 195 GGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESG 272 (486)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCC
Confidence 999999999877665 9999999999999986 89999999999999999999999999999863333 346777788
Q ss_pred cEEecCEEEEccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHH
Q 012545 275 RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 350 (461)
Q Consensus 275 ~~i~aD~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 350 (461)
+++++|.|++|+|++||++++ ..++.. ++|+|.||+++||++|||||+|||++.+ .....|..||+
T Consensus 273 ~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~ 342 (486)
T TIGR01423 273 KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGA 342 (486)
T ss_pred CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHH
Confidence 899999999999999999865 245655 5788999999999999999999999765 35677899999
Q ss_pred HHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC------cEEEe-----cCCccc--cC--CCcEEEEEE--
Q 012545 351 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLF-----GDNDLA--SA--THKFGTYWI-- 413 (461)
Q Consensus 351 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~-----~~~~~~--~~--~~~~~~~~~-- 413 (461)
.|++||++... ....+..+|+.+++.++++.+ |.++. ..+.. ...... .. .++|.|+++
T Consensus 343 ~aa~ni~g~~~--~~~~~~~vp~~vft~peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~ 418 (486)
T TIGR01423 343 AFVDTVFGNKP--RKTDHTRVASAVFSIPPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNH 418 (486)
T ss_pred HHHHHHhCCCC--cccCCCCCCEEEeCCCceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEEC
Confidence 99999986431 124566789988888876655 55441 11111 111000 11 246888877
Q ss_pred eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 414 KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 414 ~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++++|||+|++|+++.+ ++.++.+|+.++|++|+..+.-+.+++++
T Consensus 419 ~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE 465 (486)
T TIGR01423 419 ADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAE 465 (486)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHH
Confidence 57999999999999888 68999999999999998888878887765
No 24
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.9e-46 Score=380.52 Aligned_cols=401 Identities=24% Similarity=0.285 Sum_probs=282.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCCC----CCCCCceeecC---
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG--- 71 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 71 (461)
|.+.|||+||||||||++||..|+++|.+ |+|+|++.... ...|.++|.++..... .....+.....
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 55689999999999999999999999987 99999974321 2223334443322100 00000000000
Q ss_pred CC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCC-------CCEEEcCCC--cEEecCEEEEccCCCccc
Q 012545 72 SG--------------GERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 72 ~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~liiAtG~~~~~ 128 (461)
.+ ......+++++.+++++.+ .+..++.. ...|.+.+| +++.||+||||||++|.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~- 155 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV- 155 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC-
Confidence 00 0011224456679999998 77777766 345665666 47999999999999983
Q ss_pred cccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHH
Q 012545 129 TSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAA 208 (461)
Q Consensus 129 ~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~ 208 (461)
.+|. ++ .+...+++. .++..+. . .+++++|||+|++|+|+|..
T Consensus 156 --------------------------~~p~--~~-~~~~~~~~~---~~~~~~~----~-~~~~vvIIGgG~~G~E~A~~ 198 (472)
T PRK05976 156 --------------------------ELPG--LP-FDGEYVISS---DEALSLE----T-LPKSLVIVGGGVIGLEWASM 198 (472)
T ss_pred --------------------------CCCC--CC-CCCceEEcc---hHhhCcc----c-cCCEEEEECCCHHHHHHHHH
Confidence 2221 11 111223322 3333221 1 36899999999999999999
Q ss_pred HHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEcc
Q 012545 209 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGV 286 (461)
Q Consensus 209 l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~ 286 (461)
|++.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++++++++...++.+..+.+.+| +++++|.+++|+
T Consensus 199 l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 199 LADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred HHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 99999999999999999887 799999999999999999999999999997421333444555666 369999999999
Q ss_pred CCCCChhhhh---cccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCC
Q 012545 287 GGRPLISLFK---GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 287 G~~p~~~~~~---~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
|++|+++.+. .++..++|+|.||+++||+.|+|||+|||++.+ +.+..|..+|+.||.||.+...
T Consensus 278 G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-- 345 (472)
T PRK05976 278 GRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKP-- 345 (472)
T ss_pred CCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC--
Confidence 9999987542 233336789999999999999999999999754 4677899999999999986431
Q ss_pred cccCCCCCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCC
Q 012545 364 TVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGT 427 (461)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~ 427 (461)
....+..+|...+..++ +..+|.++ |..+. +.....+ ...++|.|+++ ++++|||+|++|++
T Consensus 346 ~~~~~~~~p~~~~~~p~--~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 423 (472)
T PRK05976 346 RPFDYAAIPACCYTDPE--VASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPH 423 (472)
T ss_pred CCCCCCCCCEEEECcCc--eEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 12344556766654454 44446554 22221 1211111 23567888887 57999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+ ++.++.+|+.++|++||..+..+.+++.+
T Consensus 424 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 456 (472)
T PRK05976 424 VTELISEFALALELGARLWEVAGTIHPHPTLSE 456 (472)
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhCcccCCChHH
Confidence 988 68999999999999998888777777764
No 25
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-46 Score=376.94 Aligned_cols=396 Identities=22% Similarity=0.264 Sum_probs=277.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCcccccccCCCCCC------CCCCceee--cCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEGTA------RLPGFHVC--VGS 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~ 72 (461)
.|||+||||||||++||..++++|.+ |+|||+.... ....|.++|.++...... ....+... ...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 59999999999999999999999987 9999974321 222344455444332110 01111000 000
Q ss_pred CCC--------------CCCHhHHHHcCcEEEcCCeEEEEeCCCC-EEEcCCCc--EEecCEEEEccCCCcccccccccc
Q 012545 73 GGE--------------RLLPEWYKEKGIELILSTEIVRADIASK-TLLSATGL--IFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 73 ~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
+.. .....+++..+++++.+. . .++.+.+ .+...+++ ++.||++|||||++|. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~i---- 151 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PL---- 151 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CC----
Confidence 000 011233455689988873 3 3333222 23344553 6999999999999982 12
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
||....+...++ ..++..+ . ..+++++|||+|++|+|+|..|.+.|.+
T Consensus 152 --------------------------pg~~~~~~~~~~-~~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~ 199 (466)
T PRK06115 152 --------------------------PGVTIDNQRIID-STGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQ 199 (466)
T ss_pred --------------------------CCCCCCCCeEEC-HHHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 222222222222 2222221 1 1479999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-C--CCcEEecCEEEEccCCCCCh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-K--DGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~--~G~~i~aD~vi~a~G~~p~~ 292 (461)
|+++++.+++++. +++++.+.+.+.|++.||++++++++++++.++++....+.. . +++++++|.|++|+|++||+
T Consensus 200 Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 200 VTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred EEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 9999999999987 799999999999999999999999999998633332222322 1 23579999999999999999
Q ss_pred hhhh---cccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 012545 293 SLFK---GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD 369 (461)
Q Consensus 293 ~~~~---~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 369 (461)
+.+. .++..+.+++.||+++||+.|+|||+|||++.+ .....|.+||++||+||++.. ....|.
T Consensus 279 ~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~---~~~~~~ 345 (466)
T PRK06115 279 QGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKA---GEVNYG 345 (466)
T ss_pred ccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCC---CCCCCC
Confidence 8542 234444445889999999999999999999865 467889999999999998753 125677
Q ss_pred CCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 370 YLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 370 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
.+|..+++.+++..+ |.++ |..+.. .....+ ...++|.|+++ ++++|||+|++|+++.+ ++
T Consensus 346 ~~p~~~~t~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~ 423 (466)
T PRK06115 346 LIPGVIYTRPEVATV--GKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIG 423 (466)
T ss_pred CCCeEEECCcccEEe--eCCHHHHHHCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence 899988887776666 5543 222211 222211 23567888887 57999999999999888 68
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 433 AIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.++.+|+.++|++||..+.-+.+++.+
T Consensus 424 ~~~~ai~~~~t~~dl~~~~~~hPt~~e 450 (466)
T PRK06115 424 EFCVAMEFSASAEDIALTCHPHPTRSE 450 (466)
T ss_pred HHHHHHHcCCCHHHHhhCccCCCChHH
Confidence 999999999999998887777777654
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.4e-46 Score=380.66 Aligned_cols=392 Identities=22% Similarity=0.257 Sum_probs=278.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC-CCcccccccCCCCCCCC---CCceeecC---C----
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE-RPALSKAYLFPEGTARL---PGFHVCVG---S---- 72 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~~~~~~---~---- 72 (461)
|||+||||||||++||..|+++|.+ |+|||+++... .+ .|.++|.++......+. ..+..... .
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 7999999999999999999999987 99999975321 11 22233333321100000 00000000 0
Q ss_pred ------C----CC-CCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc-EEecCEEEEccCCCccccccccccccCcc
Q 012545 73 ------G----GE-RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVSITSLTSIRSKHCL 140 (461)
Q Consensus 73 ------~----~~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~liiAtG~~~~~~~~~g~~~~~~~ 140 (461)
+ .. .....++++.+++++.+ ++..+ +.++|.+.+++ .+.||++|||||++|.+|++||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~----- 149 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLK----- 149 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcc-----
Confidence 0 00 11335567789999887 44433 46778776653 679999999999999766666643
Q ss_pred ccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 012545 141 CCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 220 (461)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~ 220 (461)
..++++..++ ..+ . ..+++++|||+|++|+|+|..|++.|.+|++++
T Consensus 150 -------------------------~~~~~~~~~~---~~~----~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~ 196 (463)
T TIGR02053 150 -------------------------EAGYLTSEEA---LAL----D-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQ 196 (463)
T ss_pred -------------------------cCceECchhh---hCc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 2233333222 111 1 136899999999999999999999999999999
Q ss_pred cCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCcEEecCEEEEccCCCCChh-h-h
Q 012545 221 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F 295 (461)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~~i~aD~vi~a~G~~p~~~-~-~ 295 (461)
+.+++++. +++++.+.+.+.|++.||+++++++|++++.++++ ..+++. +++++++|.|++|+|++|+++ + +
T Consensus 197 ~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l 273 (463)
T TIGR02053 197 RSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGL 273 (463)
T ss_pred cCCcCCCc-cCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCc
Confidence 99999987 79999999999999999999999999999873222 334442 236899999999999999998 3 2
Q ss_pred -hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe
Q 012545 296 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373 (461)
Q Consensus 296 -~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~ 373 (461)
..++.. ++|+|.||++|||+.|+|||+|||+..+ ..+..|..||+.||.||++... ...++..+|.
T Consensus 274 ~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~ 341 (463)
T TIGR02053 274 EKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGAN--AKLDLLVIPR 341 (463)
T ss_pred cccCCEECCCCcEeECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCC--CccCcCCCCe
Confidence 334555 5788999999999999999999999864 4678899999999999987521 1244566787
Q ss_pred EEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHH
Q 012545 374 FYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAK 436 (461)
Q Consensus 374 ~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~ 436 (461)
..+..+++..+ |.++ |..+. +...... ...++|.|+++ ++++|||+|++|+++.+ ++.++.
T Consensus 342 ~~~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ 419 (463)
T TIGR02053 342 VVFTDPAVASV--GLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAAL 419 (463)
T ss_pred EEeccCceEEE--eCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence 66655555544 6543 22111 1121111 23567888887 47999999999999888 689999
Q ss_pred HHHcCCCCCChhhhhccCCCcc
Q 012545 437 VARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
+|+.++|++|+..+.-+.+++.
T Consensus 420 ai~~~~t~~~l~~~~~~~pt~~ 441 (463)
T TIGR02053 420 AIRAGMTVDDLIDTLHPFPTMA 441 (463)
T ss_pred HHHCCCCHHHHhhCcccCCChH
Confidence 9999999998887765555543
No 27
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.7e-46 Score=378.38 Aligned_cols=396 Identities=24% Similarity=0.277 Sum_probs=274.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC-CCcccccccCCCCCC-----CCCCceeecCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE-RPALSKAYLFPEGTA-----RLPGFHVCVGS 72 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 72 (461)
|| +.|||+||||||||++||..|++.|.+ |+|||++.... .. .|.++|.++...... ....+......
T Consensus 1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~ 76 (466)
T PRK07818 1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEV 76 (466)
T ss_pred CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCc
Confidence 55 469999999999999999999999987 99999974321 11 233334333221000 00000000000
Q ss_pred C----------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEc--CCC--cEEecCEEEEccCCCccccccc
Q 012545 73 G----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 73 ~----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~liiAtG~~~~~~~~~ 132 (461)
. ........++..+++.+.+ .... .+.+++.+ .++ +++.||+||||||++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~----- 148 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTR----- 148 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCC-----
Confidence 0 0000111223356777665 2222 23454433 344 36899999999999993
Q ss_pred cccccCccccccccCCcccccccccCCCCCCCC-CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHH
Q 012545 133 SIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 211 (461)
Q Consensus 133 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~ 211 (461)
.+ ||.+ ...+++..+ ... ....+++++|||+|++|+|+|..|++
T Consensus 149 ----------------------~~-----pg~~~~~~v~~~~~---~~~-----~~~~~~~vvVIGgG~ig~E~A~~l~~ 193 (466)
T PRK07818 149 ----------------------LL-----PGTSLSENVVTYEE---QIL-----SRELPKSIVIAGAGAIGMEFAYVLKN 193 (466)
T ss_pred ----------------------CC-----CCCCCCCcEEchHH---Hhc-----cccCCCeEEEECCcHHHHHHHHHHHH
Confidence 22 2221 123443321 111 11247899999999999999999999
Q ss_pred CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEEEccC
Q 012545 212 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG 287 (461)
Q Consensus 212 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi~a~G 287 (461)
.|.+|+++++.+++++. +++++.+.+.+.|+++||+++++++|++++.+ ++ ...+.+. +| +++++|.|++|+|
T Consensus 194 ~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~~g~~~~i~~D~vi~a~G 270 (466)
T PRK07818 194 YGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GS-KVTVTVSKKDGKAQELEADKVLQAIG 270 (466)
T ss_pred cCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CC-eEEEEEEecCCCeEEEEeCEEEECcC
Confidence 99999999999999987 79999999999999999999999999999862 22 2334443 66 4799999999999
Q ss_pred CCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCC
Q 012545 288 GRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 363 (461)
Q Consensus 288 ~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 363 (461)
++||++.+ ..++.. ++|+|.||+++||+.|+|||+|||+..+ +.+..|..||+.||.||++... .
T Consensus 271 ~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~-~ 339 (466)
T PRK07818 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAET-L 339 (466)
T ss_pred cccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCC-C
Confidence 99999853 445655 5788999999999999999999999754 5688899999999999986531 1
Q ss_pred cccCCCCCCeEEEecCCcceEEccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCC
Q 012545 364 TVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGT 427 (461)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~ 427 (461)
....|..+|...++.++++.+ |.++ |..+. +.+...+ ....+|.|+.+ ++++|||+|++|++
T Consensus 340 ~~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~ 417 (466)
T PRK07818 340 ELGDYRMMPRATFCQPQVASF--GLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPD 417 (466)
T ss_pred ccCccCCCCeEEECCCCeEEE--eCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCC
Confidence 122677789887776766655 5543 22221 1121111 23567888887 57999999999999
Q ss_pred HHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 428 PEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+++ ++.++.+|+.++|++||....-+.++|++
T Consensus 418 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 450 (466)
T PRK07818 418 VSELLPELTLAQKWDLTAEELARNVHTHPTLSE 450 (466)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCccCCCchHH
Confidence 888 68999999999999998877667776654
No 28
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-45 Score=373.89 Aligned_cols=392 Identities=20% Similarity=0.244 Sum_probs=277.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC----CCCC--CceeecCC---C-
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLP--GFHVCVGS---G- 73 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~---~- 73 (461)
+|+||||||||++||..+++.|.+ |+|||+++.. .+..|.++|.++..... .... ++...... +
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 899999999999999999999987 9999998642 12234445554322100 0000 00000000 0
Q ss_pred -------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCCCccccccccccccCc
Q 012545 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVSITSLTSIRSKHC 139 (461)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~~~~~~~~~g~~~~~~ 139 (461)
.......++++.+++++.+ ++..++.....|..+++ ++++||+||||||++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~----------- 146 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTE----------- 146 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCC-----------
Confidence 0011223445678999887 55555533333444444 369999999999999933
Q ss_pred cccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 012545 140 LCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219 (461)
Q Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli 219 (461)
+| +++.+...+++.. ++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++
T Consensus 147 ----------------~p---~~~~~~~~v~~~~---~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli 199 (458)
T PRK06912 147 ----------------LP---FAPFDGKWIINSK---HAMSLP----S-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIV 199 (458)
T ss_pred ----------------CC---CCCCCCCeEEcch---HHhCcc----c-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 22 2333333344332 222221 1 3689999999999999999999999999999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhh--
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-- 295 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~-- 295 (461)
++.+++++. +++++.+.+.+.|++.||++++++++++++. ++....+.. +| +++++|.|++|+|++|+++.+
T Consensus 200 ~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l 275 (458)
T PRK06912 200 EMAPQLLPG-EDEDIAHILREKLENDGVKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNL 275 (458)
T ss_pred ecCCCcCcc-ccHHHHHHHHHHHHHCCCEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCc
Confidence 999999887 7999999999999999999999999999976 232223333 34 369999999999999998754
Q ss_pred -hcccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeE
Q 012545 296 -KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYF 374 (461)
Q Consensus 296 -~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~ 374 (461)
..++..++++|.||+++||+.|+|||+|||+..+ +.+..|..||+.||.++.+.. ....+..+|..
T Consensus 276 ~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~---~~~~~~~~p~~ 342 (458)
T PRK06912 276 EKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGGI----------QLAHVAFHEGTTAALHASGED---VKVNYHAVPRC 342 (458)
T ss_pred hhcCceecCCCEEeCCCeecCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCC---CCCCcCCCCeE
Confidence 2345554556999999999999999999999754 567789999999999998643 12446778887
Q ss_pred EEecCCcceEEccCCC------CcEEEec-----CCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHH
Q 012545 375 YSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKV 437 (461)
Q Consensus 375 ~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~ 437 (461)
+++.+++..+ |.++ |..+... ..... ..+.+|.|+++ ++++|||+|++|+++.+ ++.++.+
T Consensus 343 v~~~p~~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~a 420 (458)
T PRK06912 343 IYTSPEIASV--GLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVM 420 (458)
T ss_pred EecCchhEEe--eCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 7666666555 5443 2112211 11111 23567888887 57999999999999888 6899999
Q ss_pred HHcCCCCCChhhhhccCCCccc
Q 012545 438 ARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
|+.+++++|+..+.-+.++|.+
T Consensus 421 i~~~~t~~~l~~~~~~hPt~~e 442 (458)
T PRK06912 421 IHTEVTADIMEDFIAAHPTLSE 442 (458)
T ss_pred HHCCCCHHHHhhCcccCCCHHH
Confidence 9999999998888778887765
No 29
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.7e-45 Score=370.41 Aligned_cols=394 Identities=17% Similarity=0.206 Sum_probs=278.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC-C---CCC-CcccccccCCCCCCCCCCceeecC------C
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-P---YER-PALSKAYLFPEGTARLPGFHVCVG------S 72 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~ 72 (461)
+.|||+||||||||++||..|+++|++ |+|+|+++.. . ... |..++.++..... ...+..... .
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--~~~~~~~~~~~~~~~~ 76 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEK--NLSFEQVMATKNTVTS 76 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhc--CCCHHHHHHHHHHHHH
Confidence 379999999999999999999999987 9999998632 1 111 2223333322110 001100000 0
Q ss_pred CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC---CcEEecCEEEEccCCCccccccccccccCccccccccCCc
Q 012545 73 GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLP 149 (461)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p 149 (461)
.......+.+.+.+++++.++ +.. .+.++|.+.+ ..++.||++|||||++|..|++||+.
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~-------------- 139 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLA-------------- 139 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcC--------------
Confidence 001112345667899998874 333 3456665533 24689999999999999666555542
Q ss_pred ccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc
Q 012545 150 LFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL 229 (461)
Q Consensus 150 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~ 229 (461)
+.+++++..++ ..+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++.
T Consensus 140 ---------------~~~~v~~~~~~---~~~~----~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~- 195 (438)
T PRK07251 140 ---------------DSKHVYDSTGI---QSLE----T-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR- 195 (438)
T ss_pred ---------------CCCcEEchHHH---hcch----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-
Confidence 12334443322 2221 1 4789999999999999999999999999999999999887
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhh---ccccc-CCCc
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGG 305 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~---~~~~~-~~g~ 305 (461)
.++++.+.+.+.+++.||+++++++|++++.+ ++. ..+. .+|+++++|.+|+|+|++|+.+.+. .++.. .+|+
T Consensus 196 ~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~ 272 (438)
T PRK07251 196 EEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGA 272 (438)
T ss_pred CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCc
Confidence 68999999999999999999999999999862 232 2333 4567899999999999999987642 34444 5688
Q ss_pred EEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEE
Q 012545 306 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 385 (461)
Q Consensus 306 i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 385 (461)
|.||+++||+.|+|||+|||++.+ .....|..+|+.++.++++... .....+..+|+..+..+++ ..
T Consensus 273 i~vd~~~~t~~~~IyaiGD~~~~~----------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~p~i--a~ 339 (438)
T PRK07251 273 IKVDDYCQTSVPGVFAVGDVNGGP----------QFTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFITPPL--SQ 339 (438)
T ss_pred EEECCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEECCCce--Ee
Confidence 999999999999999999999765 3456678899999999886532 1223556688775544444 44
Q ss_pred ccCCC------CcEEE-----ecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChh
Q 012545 386 YGDNV------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLD 448 (461)
Q Consensus 386 ~g~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 448 (461)
+|.++ |..+. +.....+ ...++|.|+++ ++++|||+|++|+++.+ ++.++.+|++++|++++.
T Consensus 340 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 419 (438)
T PRK07251 340 VGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFK 419 (438)
T ss_pred eeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 46543 22111 2211111 23456888887 57999999999999888 699999999999999887
Q ss_pred hhhccCCCccc
Q 012545 449 VLKNEGLSFAS 459 (461)
Q Consensus 449 ~l~~~~~~~~~ 459 (461)
...-+.+++++
T Consensus 420 ~~~~~hPt~~e 430 (438)
T PRK07251 420 KQIFTHPTMAE 430 (438)
T ss_pred cccccCCChHH
Confidence 76667777654
No 30
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.2e-45 Score=378.29 Aligned_cols=394 Identities=18% Similarity=0.213 Sum_probs=277.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C-CCCCcccccccCCCCC------CCC-CCceeecCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P-YERPALSKAYLFPEGT------ARL-PGFHVCVGSG 73 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~-~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~ 73 (461)
..|||+||||||||++||..|++.|.+ |+|||++... + +..|.++|.++..... ..+ .++.......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 469999999999999999999999987 9999998431 1 1223334433221100 000 0110000000
Q ss_pred CC----------------CCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCccccccccc
Q 012545 74 GE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 74 ~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
.. ......++.. +++++.+ ++..++.....|.+.+++ +++||+||||||++|.+|.+||+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCC
Confidence 00 0112233444 7899887 677666554455555553 69999999999999977766664
Q ss_pred cccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC
Q 012545 135 RSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 214 (461)
Q Consensus 135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 214 (461)
.+ ..+++ +.+.+ .. ...+++++|||+|++|+|+|..|.+.|.
T Consensus 253 ~~------------------------------~~~~~--~~~~~-~~-----~~~~~~vvViGgG~ig~E~A~~l~~~g~ 294 (561)
T PRK13748 253 KE------------------------------TPYWT--STEAL-VS-----DTIPERLAVIGSSVVALELAQAFARLGS 294 (561)
T ss_pred Cc------------------------------cceEc--cHHHh-hc-----ccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 31 11221 11111 10 1147899999999999999999999999
Q ss_pred cEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 215 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+|+++++. .+++. +++++.+.+.+.|++.||++++++++++++.+ ++ ...+.+.++ ++++|.|++|+|++||+.+
T Consensus 295 ~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~-~~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 295 KVTILARS-TLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DG-EFVLTTGHG-ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred EEEEEecC-ccccc-cCHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CC-EEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence 99999985 45665 79999999999999999999999999999863 33 234555555 7999999999999999985
Q ss_pred h---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCC
Q 012545 295 F---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 370 (461)
Q Consensus 295 ~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 370 (461)
+ ..++.. ++|+|.||+++||++|||||+|||++.+ .....|..||+.||.||++.. ...++..
T Consensus 370 l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~ 436 (561)
T PRK13748 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD---AALDLTA 436 (561)
T ss_pred cCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCC---cccCCCC
Confidence 4 345655 5788999999999999999999999875 346678899999999998653 2245566
Q ss_pred CCeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 371 LPYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 371 ~p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+|...+..++++ .+|.++ |..+ .+.+.... ...++|.|+++ ++++|||+|++|+.+.+ ++.
T Consensus 437 ~p~~~~~~p~~a--~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~ 514 (561)
T PRK13748 437 MPAVVFTDPQVA--TVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQT 514 (561)
T ss_pred CCeEEEccCCce--eeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHH
Confidence 787665555554 446554 3211 12221111 23567899888 48999999999999888 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|+.++|++|+..+.-+.+++++
T Consensus 515 ~~~ai~~~~t~~~l~~~~~~~Pt~~e 540 (561)
T PRK13748 515 AALAIRNRMTVQELADQLFPYLTMVE 540 (561)
T ss_pred HHHHHHcCCCHHHHhcccccCCchHH
Confidence 99999999999987777767766654
No 31
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=5.6e-45 Score=369.79 Aligned_cols=393 Identities=18% Similarity=0.191 Sum_probs=276.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC---------C---CCCCCCcccccccCCCCC----CCCCCcee
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA---------V---APYERPALSKAYLFPEGT----ARLPGFHV 68 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~---------~---~~~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (461)
.||+||||+|+||+.||..+++.|.+ |++||+.. . ..+..|.++|.++..... .....+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 58999999999999999999999987 99999731 1 112234444544432110 00011100
Q ss_pred ecCC----C--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcC--CC--cEEecCEEEEccCCCc
Q 012545 69 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV 126 (461)
Q Consensus 69 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~liiAtG~~~ 126 (461)
.... + .......+++..+|+++.+ ....++ .++|.+. ++ ++++||+||||||++|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVD--KHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 0000 0 0112234566789999998 444444 4455442 33 3699999999999999
Q ss_pred cccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHH
Q 012545 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 206 (461)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a 206 (461)
.+|++||..+ ..+ +.+++..+. ..+++++|||+|++|+|+|
T Consensus 156 ~~p~ipG~~~-------------------------------~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A 196 (484)
T TIGR01438 156 RYPGIPGAKE-------------------------------LCI---TSDDLFSLP-----YCPGKTLVVGASYVALECA 196 (484)
T ss_pred CCCCCCCccc-------------------------------eee---cHHHhhccc-----ccCCCEEEECCCHHHHHHH
Confidence 7666555421 111 222222221 1367999999999999999
Q ss_pred HHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEE
Q 012545 207 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVV 283 (461)
Q Consensus 207 ~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi 283 (461)
..|++.|.+|+++.+ +.+++. +++++.+.+.+.|++.||++++++.++++...+ +. ..+++.++ +++++|.|+
T Consensus 197 ~~l~~~G~~Vtli~~-~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl 272 (484)
T TIGR01438 197 GFLAGIGLDVTVMVR-SILLRG-FDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVL 272 (484)
T ss_pred HHHHHhCCcEEEEEe-cccccc-cCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEE
Confidence 999999999999997 567765 799999999999999999999999999998632 22 35666655 379999999
Q ss_pred EccCCCCChhhh---hcccccC--CCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 284 VGVGGRPLISLF---KGQVAEN--KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 284 ~a~G~~p~~~~~---~~~~~~~--~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
+|+|++||++++ ..++..+ +|+|.||+++||+.|+|||+|||+.... .....|.+||+.+|+||++
T Consensus 273 ~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 273 LAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred EEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhc
Confidence 999999999864 3345543 4889999999999999999999996422 3567799999999999986
Q ss_pred ccCCCcccCCCCCCeEEEecCCcceEEccCCC-------Cc-EEEe--cCCccc------cC--CCcEEEEEE---eCCE
Q 012545 359 TEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD-TVLF--GDNDLA------SA--THKFGTYWI---KDGK 417 (461)
Q Consensus 359 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~-~~~~--~~~~~~------~~--~~~~~~~~~---~~~~ 417 (461)
... ....|..+|+..++.++++.+ |.++ +. .+.. ....+. .. ..+|.|+++ ++++
T Consensus 344 ~~~--~~~~~~~~p~~i~~~p~ia~v--Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ 419 (484)
T TIGR01438 344 GST--VICDYENVPTTVFTPLEYGAC--GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENER 419 (484)
T ss_pred CCC--cccccccCCeEEeCCCceeee--cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCe
Confidence 431 124567789887777766555 5443 11 1111 111110 11 457888776 3799
Q ss_pred EEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 418 VVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 418 i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
|||+|++|+++.+ ++.++.+|++++|++||..+.-+.+++.+
T Consensus 420 ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE 462 (484)
T TIGR01438 420 VVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAE 462 (484)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHH
Confidence 9999999999888 68999999999999998887767777654
No 32
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.7e-45 Score=369.56 Aligned_cols=393 Identities=18% Similarity=0.174 Sum_probs=274.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCcccccccCCCCC----CCCC--Cceeec-CCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGT----ARLP--GFHVCV-GSG 73 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~~ 73 (461)
.+|++|||+|+||+++|..|++.|.+ |+++|+++... +..|.+++.++..... ...+ ++.... ..+
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 69999999999999999999999987 99999974321 1223334443321100 0001 111000 000
Q ss_pred --------------CC-CCCHhHHHHc-CcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcccccccccc
Q 012545 74 --------------GE-RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 74 --------------~~-~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.. ......++.. +++++.+ ...-++...-.|...+++ ++.||+||||||++|.+|++||+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~ 171 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM 171 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcC
Confidence 00 0122333333 7888887 444444332334445553 689999999999999777666642
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
+ ..+++ + .+. +.. ...+++++|||+|++|+|+|..|.+.|.+
T Consensus 172 ~------------------------------~~~~~--~-~~~--l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~ 213 (479)
T PRK14727 172 D------------------------------TPYWT--S-TEA--LFS---DELPASLTVIGSSVVAAEIAQAYARLGSR 213 (479)
T ss_pred c------------------------------cceec--c-hHH--hcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCE
Confidence 1 11121 1 111 111 11478999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
|+++.+. .+++. +++++.+.+.+.|++.||++++++++++++.+++ ...+.+.++ ++++|.|++|+|++||++++
T Consensus 214 Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l 288 (479)
T PRK14727 214 VTILARS-TLLFR-EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDN--GFVLTTGHG-ELRAEKLLISTGRHANTHDL 288 (479)
T ss_pred EEEEEcC-CCCCc-chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC--EEEEEEcCC-eEEeCEEEEccCCCCCccCC
Confidence 9999874 56665 7999999999999999999999999999986332 234566665 69999999999999999854
Q ss_pred ---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC
Q 012545 296 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 371 (461)
Q Consensus 296 ---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 371 (461)
..++.. .+|+|.||+++||++|+|||+|||+..+ .....|..||+.||.||++... ..++...
T Consensus 289 ~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~ 355 (479)
T PRK14727 289 NLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLP----------QFVYVAAAAGSRAGINMTGGNA---TLDLSAM 355 (479)
T ss_pred CchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcc----------hhhhHHHHHHHHHHHHHcCCCc---ccccccC
Confidence 235555 5788999999999999999999999875 3456788999999999987532 2455667
Q ss_pred CeEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 372 PYFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 372 p~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
|+..+..+++..+ |.++ |..+ .+.+.... ...++|.|+++ ++++|||+|++|+.+.+ ++.+
T Consensus 356 p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~ 433 (479)
T PRK14727 356 PAVIFTDPQVATV--GLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSA 433 (479)
T ss_pred CcEEEecCceeee--eCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHH
Confidence 8776655555444 6554 2211 22221111 23567898887 57999999999999888 6899
Q ss_pred HHHHHcCCCCCChhhhhccCCCccc
Q 012545 435 AKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+.+|+.++|++||..+.-+.+++.+
T Consensus 434 ~~ai~~~~t~~~l~~~~~~hPt~~E 458 (479)
T PRK14727 434 ALAIHNRMTVEELADQLFPYLTMVE 458 (479)
T ss_pred HHHHHcCCCHHHHhcCCccCCChHH
Confidence 9999999999998877777776654
No 33
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.7e-45 Score=369.43 Aligned_cols=398 Identities=22% Similarity=0.283 Sum_probs=278.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeC-------CCCC--CCCCCc-ccccccCCCCC----CCC-CCc
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------EAVA--PYERPA-LSKAYLFPEGT----ARL-PGF 66 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~-------~~~~--~~~~~~-~~~~~~~~~~~----~~~-~~~ 66 (461)
|++.||++||||||||++||..+++.|.+ |+|||+ .... +..+.| +++.++..... .+. ..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 34579999999999999999999999987 999998 2111 111222 22322211100 000 000
Q ss_pred eeecCC---C--------------CCCCCHhHHHHcCcEEEcCCeEEEEeC--CCCEEEcC--CCcEEecCEEEEccCCC
Q 012545 67 HVCVGS---G--------------GERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGST 125 (461)
Q Consensus 67 ~~~~~~---~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~liiAtG~~ 125 (461)
...... + ......++++..+++++.+ ++..++. +.++|.+. ++++++||++|||||++
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 000000 0 0011223455678999987 5555552 24566653 34579999999999999
Q ss_pred ccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHH
Q 012545 126 VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 205 (461)
Q Consensus 126 ~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~ 205 (461)
|. .+|. ++ .+...+++. +++..+ . ..+++++|+|+|++|+|+
T Consensus 157 p~---------------------------~~p~--~~-~~~~~~~~~---~~~~~~----~-~~~~~vvVvGgG~~g~E~ 198 (475)
T PRK06327 157 PR---------------------------HLPG--VP-FDNKIILDN---TGALNF----T-EVPKKLAVIGAGVIGLEL 198 (475)
T ss_pred CC---------------------------CCCC--CC-CCCceEECc---HHHhcc----c-ccCCeEEEECCCHHHHHH
Confidence 93 2221 11 112233322 222222 1 147899999999999999
Q ss_pred HHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC--C--cEEecCE
Q 012545 206 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADI 281 (461)
Q Consensus 206 a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G--~~i~aD~ 281 (461)
|..|++.|.+|+++++.+++++. +++++.+.+.+.|++.||+++++++|++++.++++ ..+.+.+ | +++++|.
T Consensus 199 A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~ 275 (475)
T PRK06327 199 GSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDK 275 (475)
T ss_pred HHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCE
Confidence 99999999999999999998886 79999999999999999999999999999873322 3455444 3 4799999
Q ss_pred EEEccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 282 VVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 282 vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
+++|+|++|+++.+ ..++.. ++|+|.||+++||+.|+|||+|||+..+ .....|..||+.||.||.
T Consensus 276 vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 276 LIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIA 345 (475)
T ss_pred EEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHc
Confidence 99999999999854 234555 5788999999999999999999999754 457789999999999998
Q ss_pred cccCCCcccCCCCCCeEEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEE
Q 012545 358 ATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGV 421 (461)
Q Consensus 358 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~ 421 (461)
+... ...|..+|+.+++.++++.+ |.++ |..+.. .+...+ ....+|+|+++ ++++|||+
T Consensus 346 g~~~---~~~~~~~p~~~~~~pe~a~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~ 420 (475)
T PRK06327 346 GQKG---HIDYNTIPWVIYTSPEIAWV--GKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGV 420 (475)
T ss_pred CCCC---CCCCCCCCeEEeCCcceEEE--eCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEE
Confidence 6531 24677789887665665554 6544 221211 111111 23567888887 58999999
Q ss_pred EEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 422 FLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 422 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
|++|+++.+ ++.++.+|++++|++||..+.-+.+++.+
T Consensus 421 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 459 (475)
T PRK06327 421 HVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459 (475)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHH
Confidence 999999888 68999999999999998888777777653
No 34
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.6e-44 Score=364.78 Aligned_cols=393 Identities=18% Similarity=0.236 Sum_probs=279.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC----CCCCCceee-------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVC------- 69 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~------- 69 (461)
+.||++|||+|++|..||.. ..|.+ |+|||++... .+..|.++|.++..... .+...+...
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence 36999999999999998654 45876 9999997542 23345556655532211 000111000
Q ss_pred ----cCCC---CCC---C-CHhHH---HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccccc
Q 012545 70 ----VGSG---GER---L-LPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 70 ----~~~~---~~~---~-~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.... ... . ..... ++.+++++.++.+.. +.++|.+.+++++.||+||||||++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p------ 146 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIP------ 146 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCC------
Confidence 0000 000 0 01111 237899999865443 57788887888899999999999999433
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
+. .+. .++ .+.+.+++..+.+ .+++++|||+|++|+|+|..|.+.|.+
T Consensus 147 ---------------------~~---~~~--~~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~ 194 (452)
T TIGR03452 147 ---------------------PA---IAD--SGV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTR 194 (452)
T ss_pred ---------------------CC---CCC--CCC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCc
Confidence 21 111 122 2235555555432 378999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
|+++++.+.+++. +++++.+.+.+.++ .||+++++++|++++.++++ ..+++.+|+++++|.|++|+|++|+++++
T Consensus 195 Vtli~~~~~ll~~-~d~~~~~~l~~~~~-~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 195 VTIVNRSTKLLRH-LDEDISDRFTEIAK-KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred EEEEEccCccccc-cCHHHHHHHHHHHh-cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 9999999998876 79999988877554 68999999999999863333 45677788899999999999999999875
Q ss_pred h---ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC
Q 012545 296 K---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 371 (461)
Q Consensus 296 ~---~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 371 (461)
. .++.. ++|+|.||+++||+.|+|||+|||++.+ +....|.+||+++|+||++.... ....+..+
T Consensus 271 ~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~ 339 (452)
T TIGR03452 271 DAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFV 339 (452)
T ss_pred CchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCC
Confidence 3 35665 5788999999999999999999999865 34567889999999999875310 12556778
Q ss_pred CeEEEecCCcceEEccCCC------CcEEEec-----CCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHH
Q 012545 372 PYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAI 434 (461)
Q Consensus 372 p~~~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~ 434 (461)
|+.+++.+++..+ |.++ |..+... ....+ ..+.+|.|+++ ++++|||+|++|+++.+ ++.+
T Consensus 340 p~~i~t~p~ia~v--Glte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~ 417 (452)
T TIGR03452 340 PSAVFTHPQIATV--GLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPL 417 (452)
T ss_pred CeEEECCCCeeee--eCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHH
Confidence 9887766666555 5544 2222111 11111 23567888888 58999999999999987 6899
Q ss_pred HHHHHcCCCCCChhhh-hccCCCccc
Q 012545 435 AKVARVQPSVESLDVL-KNEGLSFAS 459 (461)
Q Consensus 435 ~~~~~~~~~~~~~~~l-~~~~~~~~~ 459 (461)
+.+|+.++|++||..+ .-+.++|++
T Consensus 418 ~~ai~~~~t~~~l~~~~~~~hPt~~e 443 (452)
T TIGR03452 418 ITAMAFGLDAREMARKQYWIHPALPE 443 (452)
T ss_pred HHHHHcCCCHHHHhhCCcccCCchHH
Confidence 9999999999998765 346666654
No 35
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-44 Score=373.46 Aligned_cols=398 Identities=20% Similarity=0.261 Sum_probs=279.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC--CC---CCCCCCcccccccCCCCC----CC---CCCceee---
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--AV---APYERPALSKAYLFPEGT----AR---LPGFHVC--- 69 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~--~~---~~~~~~~~~~~~~~~~~~----~~---~~~~~~~--- 69 (461)
.|||+|||+|++|..||..++++|.+ |+|||++ .. +....|.++|.++..... .+ ...+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999988 9999975 22 123335555655443311 00 0111100
Q ss_pred --------------c-CC-C-C---------------CCCCHhHHHHcC-------cEEEcCCeEEEEeCCCCEEEc-CC
Q 012545 70 --------------V-GS-G-G---------------ERLLPEWYKEKG-------IELILSTEIVRADIASKTLLS-AT 109 (461)
Q Consensus 70 --------------~-~~-~-~---------------~~~~~~~~~~~~-------v~~~~~~~v~~i~~~~~~v~~-~~ 109 (461)
. .. . . .......++..+ ++++.+.. .-+ +.++|.+ .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a-~f~--~~~~v~v~~~ 269 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERG-HIV--DKNTIKSEKS 269 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEE-EEe--cCCeEEEccC
Confidence 0 00 0 0 011122233333 67777632 222 3455544 35
Q ss_pred CcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcC
Q 012545 110 GLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 189 (461)
Q Consensus 110 ~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 189 (461)
++++.||++|||||++|.+|. +++.+..++++.. ++..+.. .
T Consensus 270 g~~i~ad~lIIATGS~P~~P~------------------------------~~~~~~~~V~ts~---d~~~l~~-----l 311 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNIPD------------------------------NIEVDQKSVFTSD---TAVKLEG-----L 311 (659)
T ss_pred CEEEECCEEEEcCCCCCCCCC------------------------------CCCCCCCcEEehH---Hhhhhhh-----c
Confidence 678999999999999995432 2223334566543 3333321 3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH-HhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++.+.+.+.+ ++.||++++++.|++++.++++....
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~ 390 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVI 390 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE
Confidence 789999999999999999999999999999999999986 8999999998875 67999999999999998643333234
Q ss_pred EEeCC-------C--------cEEecCEEEEccCCCCChhhh---hcccccCCCcEEeCCCCCCC------CCCEEEeCc
Q 012545 269 VKLKD-------G--------RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGD 324 (461)
Q Consensus 269 v~~~~-------G--------~~i~aD~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~vya~GD 324 (461)
+.+.+ + +++++|.|++|+|++||++.+ ..++..++|+|.||++|||+ +|+|||+||
T Consensus 391 v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGD 470 (659)
T PTZ00153 391 IGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGD 470 (659)
T ss_pred EEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEe
Confidence 44321 1 379999999999999999865 33455566889999999997 699999999
Q ss_pred ccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC----------CcccCCCCCCeEEEecCCcceEEccCCC----
Q 012545 325 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 390 (461)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 390 (461)
|++.+ .....|..||+.|++||.+.... .....|..+|...++.++++.+ |.++
T Consensus 471 v~g~~----------~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~ 538 (659)
T PTZ00153 471 ANGKQ----------MLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAK 538 (659)
T ss_pred cCCCc----------cCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHH
Confidence 99754 45778999999999999875210 1225577889887877777666 5443
Q ss_pred --C--cE-----EEecCCccc-------------------------cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHH
Q 012545 391 --G--DT-----VLFGDNDLA-------------------------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKA 433 (461)
Q Consensus 391 --~--~~-----~~~~~~~~~-------------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~ 433 (461)
+ .. ..+...... ...++|.|+++ ++++|||+|++|+++.+ ++.
T Consensus 539 ~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~ 618 (659)
T PTZ00153 539 ELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHE 618 (659)
T ss_pred hcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHH
Confidence 2 01 112221111 01567888887 58999999999999988 689
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccc
Q 012545 434 IAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
++.+|+.+++++|+..+.-+.+++.+
T Consensus 619 ~a~aI~~~~tv~dl~~~~~~hPT~sE 644 (659)
T PTZ00153 619 GVLAINLKLSVKDLAHMVHSHPTISE 644 (659)
T ss_pred HHHHHHCCCCHHHHhhCcCCCCChHH
Confidence 99999999999998888777777654
No 36
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-44 Score=368.56 Aligned_cols=395 Identities=23% Similarity=0.250 Sum_probs=276.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcccccccCCCC----CCCCCCceeecC-C--C
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVG-S--G 73 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~--~ 73 (461)
+.|||||||||+||++||..|++.|.+ |+|||++.... +..|.+++.++.... ..+.+.+..... . .
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 469999999999999999999999987 99999954311 222333443332110 000111100000 0 0
Q ss_pred --------------CCCCC-HhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccC
Q 012545 74 --------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKH 138 (461)
Q Consensus 74 --------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~ 138 (461)
..... ...++..+++++.+ .+..+ +.+.+.+ +++++.||++|+|||+. +|.+||+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~--~~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~-- 150 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFV--DPNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWL-- 150 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEc--cCCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcc--
Confidence 00111 23344567887765 44433 3345555 66789999999999998 455555421
Q ss_pred ccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 012545 139 CLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSM 218 (461)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtl 218 (461)
.....++++ ++...+. ..+++++|||+|++|+|+|..|.+.|.+|++
T Consensus 151 -------------------------~~~~~~~~~---~~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtl 197 (460)
T PRK06292 151 -------------------------ILGDRLLTS---DDAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTV 197 (460)
T ss_pred -------------------------cCCCcEECc---hHHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 012234332 2222221 1478999999999999999999999999999
Q ss_pred EccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhh-
Q 012545 219 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF- 295 (461)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~- 295 (461)
+++.+++++. +++++.+.+.+.|++. |++++++++++++.+++ ....+++.++ +++++|.|++|+|++||++.+
T Consensus 198 i~~~~~~l~~-~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~ 274 (460)
T PRK06292 198 FERGDRILPL-EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATGRRPNTDGLG 274 (460)
T ss_pred EecCCCcCcc-hhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCC
Confidence 9999999886 7999999999999999 99999999999986322 1223333333 579999999999999999853
Q ss_pred --hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCC
Q 012545 296 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 372 (461)
Q Consensus 296 --~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 372 (461)
..++.. ++|+|.||+++||+.|+|||+|||++.+ +.+..|..||+.||.||.+.. .....+..+|
T Consensus 275 l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~--~~~~~~~~~p 342 (460)
T PRK06292 275 LENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLLHEAADEGRIAAENAAGDV--AGGVRYHPIP 342 (460)
T ss_pred cHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHhcCCC--CCCcCCCCCC
Confidence 345555 5788999999999999999999999764 456789999999999998742 1124566788
Q ss_pred eEEEecCCcceEEccCCC------CcEE-----EecCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHH
Q 012545 373 YFYSRAFDLSWQFYGDNV------GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIA 435 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~------~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~ 435 (461)
+.+++.++++.+ |.++ |..+ .+.....+ ...++|.|+++ ++++|||+|++|+++.+ ++.++
T Consensus 343 ~~~~~~~~~a~v--G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~ 420 (460)
T PRK06292 343 SVVFTDPQIASV--GLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLA 420 (460)
T ss_pred eEEECCCccEEe--ECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Confidence 877766666555 5544 2222 11211111 23567888888 46999999999999888 69999
Q ss_pred HHHHcCCCCCChhhhhccCCCccc
Q 012545 436 KVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
.+|+++++++||..+.-+.+++.+
T Consensus 421 ~ai~~~~t~~~l~~~~~~hPt~~e 444 (460)
T PRK06292 421 WAMQQGLTVEDLLRMPFYHPTLSE 444 (460)
T ss_pred HHHHCCCCHHHHhhCccCCCCHHH
Confidence 999999999998877667776654
No 37
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=5.6e-44 Score=354.98 Aligned_cols=384 Identities=26% Similarity=0.413 Sum_probs=319.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.+.++||||.|+||..+..++.+...+..+|+++-.+++..|.|..++..+-.......+ .....+|++
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~ 70 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYE 70 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHH
Confidence 367899999999999999999996544567999999999999998887655432222222 235679999
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+++|+++.+..++.||++++.|.++.|+++.||+||+||||.|++|. +||
T Consensus 71 ~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P------------------------------iPG 120 (793)
T COG1251 71 ENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP------------------------------IPG 120 (793)
T ss_pred HcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC------------------------------CCC
Confidence 99999999999999999999999999999999999999999996543 567
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 243 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 243 (461)
.+.++++.+++++|..++.+.-+ ..++.+|||+|..|+|+|..|.+.|.++++++-.+.++.+.+|+.....+.+.++
T Consensus 121 ~~~~~v~~~R~i~D~~am~~~ar--~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le 198 (793)
T COG1251 121 SDLPGVFVYRTIDDVEAMLDCAR--NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLE 198 (793)
T ss_pred CCCCCeeEEecHHHHHHHHHHHh--ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHH
Confidence 77888999999999999988743 4566899999999999999999999999999999999998899999999999999
Q ss_pred hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhcc-cccCCCcEEeCCCCCCCCCCEEEe
Q 012545 244 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDFFKTSADDVYAV 322 (461)
Q Consensus 244 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~-~~~~~g~i~vd~~~~t~~~~vya~ 322 (461)
+.|++++++....++.. ++++..+.++||+.+++|.||+|+|++||..+.... +..++ +|+||++||||+|+|||+
T Consensus 199 ~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAv 275 (793)
T COG1251 199 DLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAV 275 (793)
T ss_pred hhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeeh
Confidence 99999999999888876 778889999999999999999999999999998654 55444 899999999999999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC-CCCeEEEecCCcceEEccCCC----CcEEEec
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNV----GDTVLFG 397 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~----~~~~~~~ 397 (461)
|+|+.+....+ ..+..+..|++++|+++.+...+ .|. .++...-+..++.+.+.|+.. .+.+.+.
T Consensus 276 GEcae~~g~~y------GLVaP~yeq~~v~a~hl~~~~~~----~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~ 345 (793)
T COG1251 276 GECAEHRGKVY------GLVAPLYEQAKVLADHLCGGEAE----AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFR 345 (793)
T ss_pred hhHHHhcCccc------eehhHHHHHHHHHHHHhccCccc----ccccccchhhhcccccceeeccchhhcCCCceEEEe
Confidence 99999876655 57888899999999999987643 122 222222334555566666543 2345555
Q ss_pred CCccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChh
Q 012545 398 DNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 448 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 448 (461)
|.. ...|.|+.++|++|+|+.++| ++.+-..+..+|.++.+++++.
T Consensus 346 D~~----~~iYKrlvL~dd~IvgavL~G-Dt~d~~~l~~li~~~~~~se~r 391 (793)
T COG1251 346 DEQ----RGIYKKLVLKDDKIVGAVLYG-DTSDGGWLLDLILKGADISEIR 391 (793)
T ss_pred ccc----ccceeEEEEeCCeEEEEEEEe-ecccchHHHHHHhcCCCccccc
Confidence 544 467899999999999999999 5567778888999898887644
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.1e-43 Score=361.58 Aligned_cols=397 Identities=22% Similarity=0.277 Sum_probs=276.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCC-CcccccccCCCCC-CC---CCCceeecCC---C-
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YER-PALSKAYLFPEGT-AR---LPGFHVCVGS---G- 73 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~---~- 73 (461)
.|||+|||||+||++||..|++.|.+ |+|||++.... ..+ |.+++.++..... .. ...+...... +
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 38999999999999999999999987 99999943211 112 2223333221110 00 0000000000 0
Q ss_pred -------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCCCccccccccccccCc
Q 012545 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVSITSLTSIRSKHC 139 (461)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~~~~~~~~~g~~~~~~ 139 (461)
.......++++.+++++.+ ++..++.....+...++ .++.||++|+|||++|..|++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~------- 149 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP------- 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC-------
Confidence 0001123455678999887 45555433333444343 4799999999999999433221
Q ss_pred cccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 012545 140 LCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 219 (461)
Q Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli 219 (461)
+ +.+...+++ .++...+. ..+++++|||+|++|+|+|..|.+.|.+|+++
T Consensus 150 -------------------~---~~~~~~~~~---~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli 199 (461)
T TIGR01350 150 -------------------F---DFDGEVVIT---STGALNLK-----EVPESLVIIGGGVIGIEFASIFASLGSKVTVI 199 (461)
T ss_pred -------------------C---CCCCceEEc---chHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 0 111122333 33333221 14689999999999999999999999999999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChh--hh
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LF 295 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~--~~ 295 (461)
++.+++++. +++++.+.+.+.+++.||+++++++|++++.+ ++. ..+.+.+| +++++|.+|+|+|++|+++ ++
T Consensus 200 ~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~ 276 (461)
T TIGR01350 200 EMLDRILPG-EDAEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGL 276 (461)
T ss_pred EcCCCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCc
Confidence 999998886 79999999999999999999999999999863 333 34666667 5799999999999999998 33
Q ss_pred -hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCe
Q 012545 296 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPY 373 (461)
Q Consensus 296 -~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~ 373 (461)
..++.. .+|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.+|.+|.+.... ...+...|.
T Consensus 277 ~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~ 344 (461)
T TIGR01350 277 ENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPS 344 (461)
T ss_pred HhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCe
Confidence 334555 5688999999999999999999999754 46788999999999999875421 244566777
Q ss_pred EEEecCCcceEEccCCC------CcEEEe-----cCCccc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHH
Q 012545 374 FYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAK 436 (461)
Q Consensus 374 ~~~~~~~~~~~~~g~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~ 436 (461)
..+..+++... |.++ |..+.. .+...+ ....+|.|+++ ++++|||+|++|+++.+ ++.++.
T Consensus 345 ~~~~~~~~a~v--G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ 422 (461)
T TIGR01350 345 CIYTDPEVASV--GLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVL 422 (461)
T ss_pred EEecCCceEEE--eCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence 66555555444 5443 221111 111111 23567888877 47999999999999888 689999
Q ss_pred HHHcCCCCCChhhhhccCCCccc
Q 012545 437 VARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
+|+.++|++||..+.-+.++|++
T Consensus 423 ai~~~~t~~~l~~~~~~~P~~~e 445 (461)
T TIGR01350 423 AMELELTVEELAKTIHPHPTLSE 445 (461)
T ss_pred HHHCCCCHHHHhcCcccCCCHHH
Confidence 99999999998888777777754
No 39
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.7e-43 Score=360.55 Aligned_cols=396 Identities=20% Similarity=0.203 Sum_probs=273.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC----C----C---CCCC-CcccccccCCCCC-----CCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA----V----A---PYER-PALSKAYLFPEGT-----ARLP 64 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~----~----~---~~~~-~~~~~~~~~~~~~-----~~~~ 64 (461)
|+..|||+||||||||++||..|+++|.+ |+|||++. . . +.++ |.++|.++..... ....
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 33469999999999999999999999987 99999732 1 0 1111 2223322211000 0000
Q ss_pred CceeecCC----------------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCC---CcEEecCEEEEccCCC
Q 012545 65 GFHVCVGS----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGST 125 (461)
Q Consensus 65 ~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~liiAtG~~ 125 (461)
.+...... .........++..+|+++.+ ++.. .+.++|.+.+ ++.++||+||||||++
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~ 155 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGR 155 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCC
Confidence 00000000 00001112223357887776 3333 3455665532 3479999999999999
Q ss_pred ccccc-cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHH
Q 012545 126 VSITS-LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 204 (461)
Q Consensus 126 ~~~~~-~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e 204 (461)
|.+|. +||. +. ..+ +.+++..+. ..+++++|||+|++|+|
T Consensus 156 p~~p~~i~G~------------------------------~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E 196 (499)
T PTZ00052 156 PSIPEDVPGA------------------------------KE-YSI---TSDDIFSLS-----KDPGKTLIVGASYIGLE 196 (499)
T ss_pred CCCCCCCCCc------------------------------cc-eee---cHHHHhhhh-----cCCCeEEEECCCHHHHH
Confidence 95542 4442 11 111 223332221 14689999999999999
Q ss_pred HHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 205 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 205 ~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
+|..|++.|.+||++.+. .+++. +++++.+.+.+.|++.||++++++.++++...+ +. ..+.+.+|+++++|.|++
T Consensus 197 ~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~ 272 (499)
T PTZ00052 197 TAGFLNELGFDVTVAVRS-IPLRG-FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLY 272 (499)
T ss_pred HHHHHHHcCCcEEEEEcC-ccccc-CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEE
Confidence 999999999999999874 56665 899999999999999999999999999998633 22 457778898999999999
Q ss_pred ccCCCCChhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 285 GVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 285 a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++|++||++++ ..++.. .+|++.+++. ||+.|+|||+|||+.... ..+..|.+||+.+|.||++..
T Consensus 273 a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~ 342 (499)
T PTZ00052 273 ATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQS 342 (499)
T ss_pred eeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCC
Confidence 99999999876 334555 5677777777 999999999999996321 467889999999999998753
Q ss_pred CCCcccCCCCCCeEEEecCCcceEEccCCC-------C-cEEEecC--C---ccc------------------cCCCcEE
Q 012545 361 GGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-DTVLFGD--N---DLA------------------SATHKFG 409 (461)
Q Consensus 361 ~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~~~~~--~---~~~------------------~~~~~~~ 409 (461)
.....+..+|+.+++.++++.+ |.++ + ..+.... . ... ..+++|.
T Consensus 343 --~~~~~~~~~p~~ift~p~ia~v--Glte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 418 (499)
T PTZ00052 343 --NEFIDYTFIPTTIFTPIEYGAC--GYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLA 418 (499)
T ss_pred --CCcCccccCCeEEecCCcceee--cCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceE
Confidence 2235677789988877777655 5443 1 1111110 0 000 0146788
Q ss_pred EEEE-e--CCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcccC
Q 012545 410 TYWI-K--DGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFASK 460 (461)
Q Consensus 410 ~~~~-~--~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 460 (461)
|+++ + +++|||+|++|++++| ++.++.+|+++++++||..+.-+.+++++.
T Consensus 419 Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~ 473 (499)
T PTZ00052 419 KLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEV 473 (499)
T ss_pred EEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchh
Confidence 8876 3 6999999999999988 689999999999999998888888887753
No 40
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=2.9e-42 Score=347.47 Aligned_cols=390 Identities=18% Similarity=0.272 Sum_probs=290.3
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCC-HhHHHHcCcEEEcCCeEEE
Q 012545 19 YAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR 97 (461)
Q Consensus 19 ~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~ 97 (461)
+||.+|++.+ +..+|+|||+++.+.|..+.+.. +..... ..+. ...... .+++.+.+++++.+++|+.
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~--~~~~-------~~~~~~~~~~~~~~gv~~~~~~~V~~ 69 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVI--DDRN-------KLLAYTPEVFIKKRGIDVKTNHEVIE 69 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-Eecccc--CCHH-------HcccCCHHHHHHhcCCeEEecCEEEE
Confidence 4788898864 45679999999876654322211 111000 0000 001122 3455889999988889999
Q ss_pred EeCCCCEEEcCC---CcEEe--cCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEe
Q 012545 98 ADIASKTLLSAT---GLIFK--YQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYL 172 (461)
Q Consensus 98 i~~~~~~v~~~~---~~~~~--~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~ 172 (461)
++++.+.+.+.+ ++++. ||+||||||++|..|. +||.+..++++.
T Consensus 70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~------------------------------i~G~~~~~v~~~ 119 (427)
T TIGR03385 70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN------------------------------IEGINLDIVFTL 119 (427)
T ss_pred EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC------------------------------CCCcCCCCEEEE
Confidence 999888877643 34677 9999999999995443 445445678889
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcC
Q 012545 173 REIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252 (461)
Q Consensus 173 ~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~ 252 (461)
+++.++..+++.+....+++++|+|+|++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.|++.||+++++
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 199 (427)
T TIGR03385 120 RNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLN 199 (427)
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 99999998888886556899999999999999999999999999999999887544478999999999999999999999
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCc
Q 012545 253 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPM 330 (461)
Q Consensus 253 ~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~ 330 (461)
++++++.. ++.+ +.+.+|+++++|.+|+|+|++|+.++++. ++.. .+|+|.||+++||+.|+|||+|||+..+.
T Consensus 200 ~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~ 275 (427)
T TIGR03385 200 EEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHN 275 (427)
T ss_pred CEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeee
Confidence 99999975 4433 56678889999999999999999988754 5655 57899999999999999999999998766
Q ss_pred cccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCC-CCCeEEEecCCcceEEccCCC------CcEE---Ee--cC
Q 012545 331 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNV------GDTV---LF--GD 398 (461)
Q Consensus 331 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~------~~~~---~~--~~ 398 (461)
...+.....+.+..|.+||++||+||.+.. ..|. ..+.....+++..+..+|.++ |..+ .+ .+
T Consensus 276 ~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~ 350 (427)
T TIGR03385 276 IITKKPAWVPLAWGANKMGRIAGENIAGND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKT 350 (427)
T ss_pred ccCCCceeeechHHHHHHHHHHHHHhcCCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCC
Confidence 544444445688899999999999998753 2333 223334555666777778654 2211 11 11
Q ss_pred Ccc--ccCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhh-ccCCCcc
Q 012545 399 NDL--ASATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLK-NEGLSFA 458 (461)
Q Consensus 399 ~~~--~~~~~~~~~~~~--~~~~i~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 458 (461)
... .....+|.|+++ ++++|||+|++|+. +.+ ++.++.+|++++|++|+..+. -..++|+
T Consensus 351 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~ 417 (427)
T TIGR03385 351 HANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYS 417 (427)
T ss_pred CCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCC
Confidence 111 123456888887 47999999999998 777 689999999999998876443 3334444
No 41
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-42 Score=314.39 Aligned_cols=391 Identities=19% Similarity=0.257 Sum_probs=292.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCcccccccCCCCC-----CCCCCceeecCCCC-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT-----ARLPGFHVCVGSGG- 74 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~- 74 (461)
+.||+.|||||.+|+++|+..++.|.+ +.|+|-.-.. +-.+.|.+|..++.... .+..++.+......
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 469999999999999999999999988 9999987221 22334555554443311 11111111110000
Q ss_pred -------------CCC----CHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCCc--EEecCEEEEccCCCcccccccccc
Q 012545 75 -------------ERL----LPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 75 -------------~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
..+ +...+.+.+++++.+ +..-+++.+-.|...++. .+.+++++||+|++|.+|+|||.+
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E 174 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAE 174 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchh
Confidence 001 122233467888887 555555555567776774 368899999999999999999964
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
-|.+.++.|.+.+ .|++++|+|+|++++|+|..++.+|.+
T Consensus 175 --------------------------~gidSDgff~Lee--------------~Pkr~vvvGaGYIavE~Agi~~gLgse 214 (478)
T KOG0405|consen 175 --------------------------LGIDSDGFFDLEE--------------QPKRVVVVGAGYIAVEFAGIFAGLGSE 214 (478)
T ss_pred --------------------------hccccccccchhh--------------cCceEEEEccceEEEEhhhHHhhcCCe
Confidence 2334455554322 489999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
++++-|.+.++.. ||+.+++.+.+.++..||++|.++.++++....++.. .+.+..|....+|.++||+|+.||+.-+
T Consensus 215 thlfiR~~kvLR~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 215 THLFIRQEKVLRG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred eEEEEecchhhcc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccc
Confidence 9999999999988 8999999999999999999999999999998666644 4455566556699999999999999755
Q ss_pred ---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCC
Q 012545 296 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 371 (461)
Q Consensus 296 ---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 371 (461)
+.++.. .+|.|.||++.+||+|+||++||+++-- .....|..+|+..++.+++... ....+|..+
T Consensus 293 ~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~-~~kldY~nV 361 (478)
T KOG0405|consen 293 NLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGK-DTKLDYENV 361 (478)
T ss_pred cchhcceeeCCCCCEEEeccccCCCCceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCC-CCccccccC
Confidence 456666 6899999999999999999999999864 4567788999999999998532 235899999
Q ss_pred CeEEEecCCcceEEccCCC-------C--c-EEEecCCccc------cCCCcEEEEEE--eCCEEEEEEEecCCHHH-HH
Q 012545 372 PYFYSRAFDLSWQFYGDNV-------G--D-TVLFGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NK 432 (461)
Q Consensus 372 p~~~~~~~~~~~~~~g~~~-------~--~-~~~~~~~~~~------~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~ 432 (461)
|..++.++....+ |+++ | + .++...+.+- .....++|+.+ ++.+++|+|++|..+.| ++
T Consensus 362 p~vVFshP~igtV--GLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQ 439 (478)
T KOG0405|consen 362 PCVVFSHPPIGTV--GLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQ 439 (478)
T ss_pred ceEEEecCCcccc--cCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHh
Confidence 9999888887666 5544 1 1 2333333322 22345677776 89999999999999888 59
Q ss_pred HHHHHHHcCCCCCChhhhhcc
Q 012545 433 AIAKVARVQPSVESLDVLKNE 453 (461)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~ 453 (461)
.++.++.++.|..|+++-..-
T Consensus 440 Gf~VAvKmGaTKadFD~tVaI 460 (478)
T KOG0405|consen 440 GFAVAVKMGATKADFDSTVAI 460 (478)
T ss_pred hhhhheecCcchhhhccceee
Confidence 999999999999998864433
No 42
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.2e-42 Score=319.68 Aligned_cols=397 Identities=23% Similarity=0.288 Sum_probs=294.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CC-CCcccccccCCCCCCCCC------CceeecC---
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YE-RPALSKAYLFPEGTARLP------GFHVCVG--- 71 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~-~~~~~~~~~~~~~~~~~~------~~~~~~~--- 71 (461)
.||++|||+||+|..||...++.|++ -+.+|++.... .. .|-+||.++..++..+.. ......+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 59999999999999999999999998 68899976532 11 344567776655321110 0000000
Q ss_pred CC--------------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEEEcCCC--cEEecCEEEEccCCCcccccccccc
Q 012545 72 SG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVSITSLTSIR 135 (461)
Q Consensus 72 ~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~~~g~~ 135 (461)
.+ ....+...+++++++++.+ .-.-+++..-.+...+| ..+.++++|+|||+.- ++.||++
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV--~~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCcc--CCCCCeE
Confidence 00 0112344566788888887 33334443333444454 4689999999999965 2223321
Q ss_pred ccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 012545 136 SKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 215 (461)
Q Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 215 (461)
.+.+.+.++.....+.. -|++++|+|+|++|+|++....++|.+
T Consensus 193 ----------------------------IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGse 236 (506)
T KOG1335|consen 193 ----------------------------IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSE 236 (506)
T ss_pred ----------------------------ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCe
Confidence 23445555555444444 489999999999999999999999999
Q ss_pred EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCC
Q 012545 216 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 216 Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p 290 (461)
||+++..+.+.+. +|.++++.+++.|++.|++|+++++|...+.+.+|. ..+.+.+ + ++++||.+++++|++|
T Consensus 237 VT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~-v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 237 VTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGP-VEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred EEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCc-eEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 9999999999988 899999999999999999999999999999877764 3455433 3 4799999999999999
Q ss_pred Chhhh---hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCccc
Q 012545 291 LISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 366 (461)
Q Consensus 291 ~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 366 (461)
-+.-+ +.++.. ..+.+.||+.++|.+|+||++||++..|+. ...|..||..+.+.|.+.. ...
T Consensus 315 ~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~---~hv 381 (506)
T KOG1335|consen 315 FTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGH---GHV 381 (506)
T ss_pred cccCCChhhcccccccccceeccccccccCCceEEecccCCcchh----------hhhhhhhchhheeeecccC---ccc
Confidence 88755 345555 578999999999999999999999999854 5667789999988888754 248
Q ss_pred CCCCCCeEEEecCCcceEEccCCC----CcEEEecCCc-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHH-H
Q 012545 367 GYDYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEE-N 431 (461)
Q Consensus 367 ~~~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~ 431 (461)
.|+.+|.+.++.++++|++..+.. |..+..+.++ .+ ...++|.|+.. +++||||+||+|+++.| +
T Consensus 382 ~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli 461 (506)
T KOG1335|consen 382 DYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELI 461 (506)
T ss_pred ccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHH
Confidence 899999999999999999443221 3334333332 11 34678888777 78999999999999999 5
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 432 KAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
+....+|..+.+.+|....--+.+++-
T Consensus 462 ~EA~lAieyGasaeDvarvchaHPTlS 488 (506)
T KOG1335|consen 462 HEASLAIEYGASAEDVARVCHAHPTLS 488 (506)
T ss_pred HHHHHHHHhCccHHHHhhccCCCCcHH
Confidence 888889999999999887766665543
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6.3e-42 Score=329.90 Aligned_cols=310 Identities=25% Similarity=0.365 Sum_probs=248.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
++++||||||++|+.+|..|.+.. ++.+|+|||+..++.|. |.+..... ..++. ......+...++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~-----g~l~~------~~i~~p~~~~~~~ 69 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVAT-----GTLSE------SEIAIPLRALLRK 69 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhc-----CCCCh------hheeccHHHHhcc
Confidence 679999999999999999999975 35669999999988775 22211111 11100 0112345666664
Q ss_pred cC-cEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.+ ++++++ +|++||+++++|.+.++..+.||+||+|+|+.+..+.+||+++
T Consensus 70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E--------------------------- 121 (405)
T COG1252 70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAE--------------------------- 121 (405)
T ss_pred cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHH---------------------------
Confidence 54 999998 9999999999999999778999999999999997666666543
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHh-------cCC----CcEEEECCCHHHHHHHHHHHHC-------------CCcEEEE
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKA-------KKN----GKAVVVGGGYIGLELSAALKIN-------------NIDVSMV 219 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~-------~~~----~~v~VvG~G~~g~e~a~~l~~~-------------g~~Vtli 219 (461)
..+.+++++++.+++.++.. .+. .+++|+|+|++|+|+|.+|.++ ..+|+++
T Consensus 122 ----~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LV 197 (405)
T COG1252 122 ----YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILV 197 (405)
T ss_pred ----hCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEE
Confidence 34567789999988887751 112 2699999999999999998764 1389999
Q ss_pred ccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-EEecCEEEEccCCCCChhhhh-c
Q 012545 220 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLFK-G 297 (461)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-~i~aD~vi~a~G~~p~~~~~~-~ 297 (461)
++.+++++. +++++++..++.|++.||++++++.|++++. + .|++++|. ++++|.+|||+|.+++...-+ .
T Consensus 198 ea~p~ILp~-~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~ 270 (405)
T COG1252 198 EAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLS 270 (405)
T ss_pred ccCchhccC-CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcC
Confidence 999999997 8999999999999999999999999999986 3 58888887 499999999999999886655 3
Q ss_pred cccc-CCCcEEeCCCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCC
Q 012545 298 QVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 370 (461)
Q Consensus 298 ~~~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 370 (461)
+.+. ..|++.||++||+ ++|+|||+|||+..... ...++..+.|.+||..+|+||.....|++..+|.+
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred hhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 5554 4699999999998 99999999999987753 12237788999999999999999888877666655
No 44
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=325.72 Aligned_cols=301 Identities=21% Similarity=0.276 Sum_probs=232.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.+++|||||||+||+.+|..|.+.+. +|+|||+++++.|. |++... .... ..... ....+...+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~~-~~g~--~~~~~--------~~~~~~~~~~ 73 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQT-TTGT--LEFRS--------ICEPVRPALA 73 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHHh-cccC--CChHH--------hHHHHHHHhc
Confidence 46799999999999999998865444 49999999887664 433221 1110 00000 0012334455
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEc----------CCCcEEecCEEEEccCCCccccccccccccCccccccccCCccccc
Q 012545 84 EKGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~ 153 (461)
..+++++.+ +|+.||++++.|.+ .++.++.||+||||||+.+..|.+||..
T Consensus 74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~------------------ 134 (424)
T PTZ00318 74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVE------------------ 134 (424)
T ss_pred cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHH------------------
Confidence 678888886 99999999999887 4566899999999999999655555532
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHH-------
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI------- 211 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~---------------~~~~v~VvG~G~~g~e~a~~l~~------- 211 (461)
..++.+++++++.++++.+... ..++++|||+|++|+|+|..|..
T Consensus 135 -------------e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~ 201 (424)
T PTZ00318 135 -------------ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVR 201 (424)
T ss_pred -------------HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 2355667788887777665321 12489999999999999999876
Q ss_pred -------CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 212 -------NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 212 -------~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
.+.+|+++++.+.+++. +++++.+.+++.|++.||+++++++|+++.. + .+.+++|+++++|.+|+
T Consensus 202 ~~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~ 274 (424)
T PTZ00318 202 NLNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVW 274 (424)
T ss_pred hhhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEE
Confidence 37899999999999986 8999999999999999999999999999974 2 47788999999999999
Q ss_pred ccCCCCChhhhhccccc-CCCcEEeCCCCC-CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 285 GVGGRPLISLFKGQVAE-NKGGIETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 285 a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~-t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
++|.+|+..+...++.. ++|+|.||++|| |++|||||+|||+..+... ..+.+..|..||+++|+||.+...+
T Consensus 275 ~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~-----~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 275 STGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERP-----LPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred ccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCC-----CCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999985333445555 579999999999 5999999999999864321 1257888999999999999987655
Q ss_pred C
Q 012545 363 K 363 (461)
Q Consensus 363 ~ 363 (461)
+
T Consensus 350 ~ 350 (424)
T PTZ00318 350 K 350 (424)
T ss_pred C
Confidence 4
No 45
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=4.8e-38 Score=310.59 Aligned_cols=305 Identities=22% Similarity=0.307 Sum_probs=234.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+|||||||+||+.+|..|+++..+..+|+|||+++.+.|... ++. +..... .. .+......+++++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~-~~~g~~--~~--------~~~~~~~~~~~~~~g 68 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPG-MIAGHY--SL--------DEIRIDLRRLARQAG 68 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhH-HHheeC--CH--------HHhcccHHHHHHhcC
Confidence 589999999999999999765334567999999988777632 211 111100 00 001123456777889
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCC
Q 012545 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADA 166 (461)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 166 (461)
++++.+ +|..+|++++.|.+.++++++||+||||||+.+..|.+||. .
T Consensus 69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~-------------------------------~ 116 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGA-------------------------------A 116 (364)
T ss_pred CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCcc-------------------------------c
Confidence 999887 89999999999999999889999999999999965544442 3
Q ss_pred CCEEEeCCHHHHHHHHHHHHh-----cCCCcEEEECCCHHHHHHHHHHHH----CC--CcEEEEccCCccCCcccCHHHH
Q 012545 167 KNIFYLREIDDADKLVEAIKA-----KKNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIA 235 (461)
Q Consensus 167 ~~v~~~~~~~~~~~l~~~l~~-----~~~~~v~VvG~G~~g~e~a~~l~~----~g--~~Vtli~~~~~~~~~~~~~~~~ 235 (461)
++++.+++++++.+..+.+.. ...++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~ 194 (364)
T TIGR03169 117 DLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVR 194 (364)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHH
Confidence 456677787777764433321 135799999999999999999975 34 589999 56677765 789999
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCC
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t 314 (461)
+.+.+.|++.||++++++++++++. + .+.+.+|+++++|.+|+|+|.+|+..+...++.. ++|+|.||+++||
T Consensus 195 ~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~ 268 (364)
T TIGR03169 195 RLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQS 268 (364)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCcccc
Confidence 9999999999999999999999853 2 5778889999999999999999997666666665 5799999999998
Q ss_pred -CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCC
Q 012545 315 -SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGY 368 (461)
Q Consensus 315 -~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 368 (461)
++|+|||+|||+..+.... .+....|..||+++|+||.....+.+...|
T Consensus 269 ~~~~~Iya~GD~~~~~~~~~-----~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~ 318 (364)
T TIGR03169 269 LSHPHVFAAGDCAVITDAPR-----PKAGVYAVRQAPILAANLRASLRGQPLRPF 318 (364)
T ss_pred CCCCCEEEeeeeeecCCCCC-----CCchHHHHHhHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999997643211 145778999999999999987766544444
No 46
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.3e-35 Score=285.48 Aligned_cols=288 Identities=22% Similarity=0.269 Sum_probs=209.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceee-cCCCCCCCCHhHHHH
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKE 84 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (461)
|||+|||||+||++||..|++.|++ |+|+|+++... .+........+|.+... .+......+.+.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGG--------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK 69 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCc--------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence 6999999999999999999999987 99999886211 11111111222322210 011112345566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
++++++. ++|..++.+.+ .+.+.++.++.||++|+|||+.|..|.+||...+
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~------------------------- 123 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEF------------------------- 123 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhc-------------------------
Confidence 8999998 69999988765 4566677789999999999999976666664210
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
....++....... . . .++++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+.. . ..+.+.+
T Consensus 124 --~~~~~~~~~~~~~-~-----~--~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l 186 (300)
T TIGR01292 124 --LGRGVSYCATCDG-P-----F--FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRL 186 (300)
T ss_pred --CCccEEEeeecCh-h-----h--cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHH
Confidence 0122332222211 0 1 1478999999999999999999999999999999876532 2 3445666
Q ss_pred Hhc-CcEEEcCCcEEEEEecCCCCEEEEEeC---C--CcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCCC
Q 012545 243 ANK-GIKIIKGTVAVGFTTNADGEVKEVKLK---D--GRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTS 315 (461)
Q Consensus 243 ~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~---~--G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~ 315 (461)
++. ||++++++.++++.. ++.+..+++. + ++++++|.+|+|+|++|+.++++..+.. .+|++.||++++|+
T Consensus 187 ~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~ 264 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTS 264 (300)
T ss_pred HhCCCeEEEeccEEEEEEc--cCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccC
Confidence 777 999999999999986 3344455542 2 3579999999999999999887655444 57899999999999
Q ss_pred CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 316 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 316 ~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
+|+|||+|||+.... +.+..|..||+.||.+|..
T Consensus 265 ~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 265 VPGVFAAGDVRDKGY---------RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCCEEEeecccCcch---------hhhhhhhhhHHHHHHHHHh
Confidence 999999999998421 5688999999999999874
No 47
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.4e-36 Score=290.60 Aligned_cols=298 Identities=20% Similarity=0.189 Sum_probs=213.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeec-CCCCCCCCHhH
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW 81 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (461)
++.+||+||||||||++||..|+++|++ ++++|+....+. +.......++|+..... +......+.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQ--------LTTTTEVENWPGDPNDLTGPLLMERMHEH 72 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCc--------eecCceECCCCCCCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999999986 899986532211 11111112222211100 00011233445
Q ss_pred HHHcCcEEEcCCeEEEEeCCCCEEEcC-CCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 82 YKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
...+++++..+ .+..++...+.+.+. +...+.||+||+|||+.|..|++||..++
T Consensus 73 ~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~----------------------- 128 (321)
T PRK10262 73 ATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAF----------------------- 128 (321)
T ss_pred HHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHc-----------------------
Confidence 55677777776 677788766664432 23368999999999999977766664320
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
....++....+.... ..+++++|+|+|++|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+
T Consensus 129 ----~~~~v~~~~~~~~~~--------~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~ 193 (321)
T PRK10262 129 ----KGRGVSACATCDGFF--------YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMD 193 (321)
T ss_pred ----CCCcEEEeecCCHHH--------cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHh
Confidence 112233332222211 158899999999999999999999999999999987653 35677888899
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC------cEEecCEEEEccCCCCChhhhhcccccCCCcEEeCC----
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD---- 310 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G------~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~---- 310 (461)
.|++.||++++++.++++..+ ++.+..+++.++ +++++|.|++++|++||..+++.++..++|+|.||+
T Consensus 194 ~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~ 272 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHG 272 (321)
T ss_pred hccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcc
Confidence 999999999999999999862 334445665432 479999999999999999988766666778999997
Q ss_pred -CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 311 -FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 311 -~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++||++|+|||+|||++.+. +++..|..+|..||..|...+
T Consensus 273 ~~~~t~~~~VyA~GD~~~~~~---------~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 273 NATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred cccccCCCCEEECeeccCCCc---------ceEEEEehhHHHHHHHHHHHH
Confidence 78999999999999997543 344457788999888887654
No 48
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-36 Score=271.24 Aligned_cols=396 Identities=21% Similarity=0.268 Sum_probs=268.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CC-------CCcccccccCCCCC-----CCCCCce
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YE-------RPALSKAYLFPEGT-----ARLPGFH 67 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~-------~~~~~~~~~~~~~~-----~~~~~~~ 67 (461)
..||++|||||.+||+||.+++..|.+ |.++|--...| |. -.|++|.+++.... +....+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~k---V~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAK---VACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCc---EEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 469999999999999999999999987 88877533211 21 12444544443211 1111111
Q ss_pred eecCCCCCCCCHhHH-H-------H----cCcEEEcCCeEEEEe-----CCCCEEEc--CCC--cEEecCEEEEccCCCc
Q 012545 68 VCVGSGGERLLPEWY-K-------E----KGIELILSTEIVRAD-----IASKTLLS--ATG--LIFKYQILVIATGSTV 126 (461)
Q Consensus 68 ~~~~~~~~~~~~~~~-~-------~----~~v~~~~~~~v~~i~-----~~~~~v~~--~~~--~~~~~d~liiAtG~~~ 126 (461)
+...........+.+ + . +++.+... .|.-++ .+.+++.. .++ +.+.+++++||||.+|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreK-kV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREK-KVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccc-eeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 211111111111111 1 1 11222111 222221 12222222 223 3578999999999999
Q ss_pred cccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHH
Q 012545 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 206 (461)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a 206 (461)
.-|+|||..++ +..++.+|++.. .|.+-+|||+|++++|+|
T Consensus 174 rYp~IpG~~Ey-------------------------~ITSDDlFsl~~--------------~PGkTLvVGa~YVaLECA 214 (503)
T KOG4716|consen 174 RYPDIPGAKEY-------------------------GITSDDLFSLPY--------------EPGKTLVVGAGYVALECA 214 (503)
T ss_pred CCCCCCCceee-------------------------eecccccccccC--------------CCCceEEEccceeeeehh
Confidence 88888886541 111222333221 467788999999999999
Q ss_pred HHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CC--cEEecCE
Q 012545 207 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADI 281 (461)
Q Consensus 207 ~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G--~~i~aD~ 281 (461)
.+|+..|.+||++.|+- ++.. ||.++++.+.+.|+++||+|.....+.+++.-++++. .|..+ .+ -+-++|.
T Consensus 215 gFL~gfg~~vtVmVRSI-~LrG-FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydT 291 (503)
T KOG4716|consen 215 GFLKGFGYDVTVMVRSI-LLRG-FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDT 291 (503)
T ss_pred hhHhhcCCCcEEEEEEe-eccc-ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhh
Confidence 99999999999998853 4444 9999999999999999999999888888887666652 33222 12 2457899
Q ss_pred EEEccCCCCChhhh---hccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHH
Q 012545 282 VVVGVGGRPLISLF---KGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356 (461)
Q Consensus 282 vi~a~G~~p~~~~~---~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 356 (461)
|+||+|+.+.++-+ ..++.. ..|.|.||+.-+||+|+|||+||+..... +....|.++|+..|+.+
T Consensus 292 Vl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rl 362 (503)
T KOG4716|consen 292 VLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRL 362 (503)
T ss_pred hhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHH
Confidence 99999999998754 345555 56889999999999999999999997643 56778999999999999
Q ss_pred hcccCCCcccCCCCCCeEEEecCCcceEEccCCC-------Cc---EEEecCCccc-------cCCCcEEEEEE---eCC
Q 012545 357 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD---TVLFGDNDLA-------SATHKFGTYWI---KDG 416 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~---~~~~~~~~~~-------~~~~~~~~~~~---~~~ 416 (461)
.+... ....|..+|..+++.+++... |+++ |+ .+..+-+.|. +....|.|... .+.
T Consensus 363 f~gs~--q~~dy~~V~TTVFTPLEy~c~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~q 438 (503)
T KOG4716|consen 363 FAGST--QLMDYDDVATTVFTPLEYGCV--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQ 438 (503)
T ss_pred hcCcc--eeeeccCCceeeecchhcccc--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCc
Confidence 97653 358899999988888877655 4443 22 2222222222 22334555554 578
Q ss_pred EEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCcc
Q 012545 417 KVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFA 458 (461)
Q Consensus 417 ~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 458 (461)
||+|.|++|++++| ++.++.+++.+++..+|+....-.+..+
T Consensus 439 kv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~a 481 (503)
T KOG4716|consen 439 KVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTA 481 (503)
T ss_pred eEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccch
Confidence 99999999999999 6999999999999999887665554443
No 49
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-36 Score=277.09 Aligned_cols=405 Identities=23% Similarity=0.366 Sum_probs=306.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCC--CceeecCCCCCC-------
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP--GFHVCVGSGGER------- 76 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 76 (461)
.-.+|||+|.+..+++...+.. ..++.|.+|..++..||.||++++-+|+...+.... .|..|.+.+...
T Consensus 179 vp~liigggtaAfaa~rai~s~-da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F 257 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSN-DATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF 257 (659)
T ss_pred CceeEEcCCchhhhcccccccC-CCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence 4579999999887776665553 346679999999999999999999999887554321 233333332211
Q ss_pred --CCHh--HHHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccc
Q 012545 77 --LLPE--WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQ 152 (461)
Q Consensus 77 --~~~~--~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~ 152 (461)
...+ ...+-||-+..+..|..++...+.|.+.||.++.||+++||||.+|
T Consensus 258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~P-------------------------- 311 (659)
T KOG1346|consen 258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRP-------------------------- 311 (659)
T ss_pred eeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCc--------------------------
Confidence 1111 1234589999999999999999999999999999999999999999
Q ss_pred cccccCCCCCC-CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccCCccCC
Q 012545 153 VLRLTDFGVEG-ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMP 227 (461)
Q Consensus 153 ~~~~~~~~~~g-~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~~ 227 (461)
+.++-+.-.+ .....+..++.+.|+.++.+.+.. .++|.|||+|++|.|+|..|.+. |.+|+-+......+.
T Consensus 312 -k~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~ 388 (659)
T KOG1346|consen 312 -KKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME 388 (659)
T ss_pred -ccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh
Confidence 3433321111 224568888999999999888875 48999999999999999999874 678988888888788
Q ss_pred cccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc--CCC
Q 012545 228 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKG 304 (461)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~--~~g 304 (461)
..+++.++++-.+.+++.||.++.+..|.++...... ..+.++||.++..|+||+|+|-.||++++.. +++. .-|
T Consensus 389 kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lG 466 (659)
T KOG1346|consen 389 KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLG 466 (659)
T ss_pred hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccC
Confidence 8889999999999999999999999999998763333 4688999999999999999999999999965 4555 568
Q ss_pred cEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEec-CCcce
Q 012545 305 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSW 383 (461)
Q Consensus 305 ~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~ 383 (461)
++.||..|+. ..|||++||++.+.+...|. +|..++.+|.-.|+.|..||.+.. .+|....+||+.. +++.+
T Consensus 467 GfrvnaeL~a-r~NvwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igy 539 (659)
T KOG1346|consen 467 GFRVNAELKA-RENVWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGY 539 (659)
T ss_pred cEEeeheeec-ccceeeecchhhhhcccccc-eeccccccceeeceeccccccccc-----CCccccceeeeccCccccc
Confidence 9999999987 67999999999998876664 566899999999999999999865 6777788888754 34444
Q ss_pred EEccCCCC--cEE-E---------------ecCC-----------------cc--------ccCCCcE---EEEEEeCCE
Q 012545 384 QFYGDNVG--DTV-L---------------FGDN-----------------DL--------ASATHKF---GTYWIKDGK 417 (461)
Q Consensus 384 ~~~g~~~~--~~~-~---------------~~~~-----------------~~--------~~~~~~~---~~~~~~~~~ 417 (461)
..+|.-.. ..+ . ..+. .+ ..+...| +.||++|++
T Consensus 540 eaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~ 619 (659)
T KOG1346|consen 540 EAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDK 619 (659)
T ss_pred ceeeecccCCCcceeeeccccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCc
Confidence 44442210 000 0 0000 00 0111223 347789999
Q ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 012545 418 VVGVFLESGTPEENKAIAKVARVQPSVESLDVL 450 (461)
Q Consensus 418 i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 450 (461)
|+|+.++.-- .++.....+|..+...+|+..+
T Consensus 620 iVGilLwN~F-nr~~~AR~II~d~kk~ddlnEv 651 (659)
T KOG1346|consen 620 IVGILLWNLF-NRIGLARTIINDNKKYDDLNEV 651 (659)
T ss_pred EEEEEehhhh-ccchhhHHHhccccchhhHHHH
Confidence 9999998633 4678888888888877776644
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.5e-35 Score=304.03 Aligned_cols=293 Identities=20% Similarity=0.267 Sum_probs=211.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+||||||||++||..|++.|++ |+|+++..-.. +.......++.......+......+.+.++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGGQ---------VKDTVGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCc---------cccCcCcccccccCCCCHHHHHHHHHHHHH
Confidence 359999999999999999999999987 99997531100 000001111111111111112234456667
Q ss_pred HcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCC
Q 012545 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
+++++++.+++|..++.+.+ .+.+.+++.+.||++|+|||+.+..|.+||..+
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~------------------------- 333 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKE------------------------- 333 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHH-------------------------
Confidence 78999999989999986653 466677778999999999999986666665321
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 241 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
.....++.....+.. + ..+++++|+|+|++|+|+|..|+..+.+|+++++.+.+.. .+.+.+.
T Consensus 334 --~~~~~v~~~~~~~~~------~--~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~ 396 (515)
T TIGR03140 334 --YIGKGVAYCPHCDGP------F--FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDK 396 (515)
T ss_pred --cCCCeEEEeeccChh------h--cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHH
Confidence 011234433222211 1 1578999999999999999999999999999998776532 2345666
Q ss_pred HHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCC
Q 012545 242 YAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 242 l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t 314 (461)
+++ .||++++++.++++.. +++.+..|++.+ | +++++|.|++++|++|++++++..+.. .+|+|.||+++||
T Consensus 397 l~~~~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~T 475 (515)
T TIGR03140 397 LKSLPNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRT 475 (515)
T ss_pred HhcCCCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCC
Confidence 766 6999999999999986 335555676653 2 469999999999999999988655554 5689999999999
Q ss_pred CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 315 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 315 ~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++|+|||+|||+..+. +++..|..+|..||.++...+
T Consensus 476 s~p~IyAaGDv~~~~~---------~~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPY---------KQIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred CCCCEEEcccccCCcc---------ceEEEEEccHHHHHHHHHHHH
Confidence 9999999999998654 244567889999999887643
No 51
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.5e-34 Score=298.79 Aligned_cols=293 Identities=23% Similarity=0.273 Sum_probs=205.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhH
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
|.+.|||+||||||||++||..|++.|++ |+|+|++..... +........++++....+......+...
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG~--------~~~~~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGGQ--------ITITSEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCce--------EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence 45679999999999999999999999887 999999753211 1111111122222111111111233445
Q ss_pred HHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
+++.+++++. ++|+.++.+.+ .+.+.++ .+.|+++|+|||++|..|.+||...
T Consensus 70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~----------------------- 124 (555)
T TIGR03143 70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEE----------------------- 124 (555)
T ss_pred HHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHH-----------------------
Confidence 5678999864 58888887654 3555555 5899999999999997666666421
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
.....++++...+.. + ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ..... .
T Consensus 125 ----~~~~~v~~~~~~~~~------~--~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~ 186 (555)
T TIGR03143 125 ----FTGRGVAYCATCDGE------F--FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---E 186 (555)
T ss_pred ----hCCceEEEEeecChh------h--cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---H
Confidence 012334443332211 0 1578999999999999999999999999999999886532 33222 3
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCcEE----ecCE----EEEccCCCCChhhhhccccc-CCCcEE
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGRTL----EADI----VVVGVGGRPLISLFKGQVAE-NKGGIE 307 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~~i----~aD~----vi~a~G~~p~~~~~~~~~~~-~~g~i~ 307 (461)
+.++..||++++++.|+++.. ++.+..+. ..+|++. ++|. |++++|++|++.+++.++.. .+|+|.
T Consensus 187 ~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~ 264 (555)
T TIGR03143 187 KVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIP 264 (555)
T ss_pred HHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEE
Confidence 334557999999999999985 44433333 3456543 3676 99999999999998876665 478999
Q ss_pred eCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 308 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 308 vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
||+++||+.|+|||+|||+.... ..+..|..||+.||.+|...
T Consensus 265 vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~~~ 307 (555)
T TIGR03143 265 TNEDMETNVPGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAERY 307 (555)
T ss_pred eCCccccCCCCEEEceeccCCCc---------chheeHHhhHHHHHHHHHHH
Confidence 99999999999999999985321 35678999999999998543
No 52
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=272.21 Aligned_cols=290 Identities=22% Similarity=0.280 Sum_probs=220.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCcee-ecCCCCCCCCHhHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWY 82 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (461)
+.+||+|||||||||+||.++.+.+++. ++|+|+.....+ +.......++|++.. ..+........+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a 71 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA 71 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence 4799999999999999999999998773 566666543211 111114466676665 33333444555666
Q ss_pred HHcCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCC
Q 012545 83 KEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFG 160 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (461)
...++++.. ..+..++... ..|.++++. ++++++|||||..+..|.+||..
T Consensus 72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~------------------------- 124 (305)
T COG0492 72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEE------------------------- 124 (305)
T ss_pred hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcch-------------------------
Confidence 678899888 4888888764 567777777 99999999999999655554321
Q ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHH
Q 012545 161 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 240 (461)
Q Consensus 161 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 240 (461)
.....+|+++..++. .+ ++++|+|+|+|.+++|.|..|.+.+.+|+++.|.+.+.. .+.+.+
T Consensus 125 --e~~g~gv~yc~~cdg--~~-------~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~ 186 (305)
T COG0492 125 --EFEGKGVSYCATCDG--FF-------KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVE 186 (305)
T ss_pred --hhcCCceEEeeecCc--cc-------cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHH
Confidence 122356777766554 22 578999999999999999999999999999999987654 234445
Q ss_pred HHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCC----cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCC
Q 012545 241 YYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT 314 (461)
Q Consensus 241 ~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G----~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t 314 (461)
.++++ +|++++++.+.++.. ++ +..|++++. +.+.+|-+++++|..|++.+++..... ++|+|.||+.++|
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G--~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~T 263 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILG--DD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMET 263 (305)
T ss_pred HHHhcCCeEEEeCCceeEEec--Cc-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCccc
Confidence 55555 899999999999987 33 567777763 278999999999999999988765444 7899999999999
Q ss_pred CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 315 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 315 ~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|+|+||||||++..+. +++..|..+|..||.++....
T Consensus 264 svpGifAaGDv~~~~~---------rqi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 264 SVPGIFAAGDVADKNG---------RQIATAAGDGAIAALSAERYL 300 (305)
T ss_pred CCCCEEEeEeeccCcc---------cEEeehhhhHHHHHHHHHHHh
Confidence 9999999999998864 356778889999988877543
No 53
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.1e-34 Score=295.92 Aligned_cols=292 Identities=22% Similarity=0.267 Sum_probs=214.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+||||||||++||.+|++.|++ |+|+++..-.. +........++.+....+......+.+.+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 278 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQ---------VLDTMGIENFISVPETEGPKLAAALEEHVKE 278 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCe---------eeccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999988 99998641110 1101111122222221222223345666778
Q ss_pred cCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
++++++.++++..++.+. ..+.+.+++++.||++|+|||+++..|.+||.+++
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~------------------------- 333 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEY------------------------- 333 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHh-------------------------
Confidence 899999998999998764 35666778789999999999999966666664320
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
....++.....+... .++++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. + +.+.+.+
T Consensus 334 --~~~~v~~~~~~~~~~--------~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l 396 (517)
T PRK15317 334 --RNKGVAYCPHCDGPL--------FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKL 396 (517)
T ss_pred --cCceEEEeeccCchh--------cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHH
Confidence 112333332221110 1578999999999999999999999999999998876532 2 3445556
Q ss_pred Hh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCCCCCC
Q 012545 243 AN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTS 315 (461)
Q Consensus 243 ~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~ 315 (461)
.+ .||++++++.++++.. +++.+..+++.+ | +++++|.+++++|++||+++++..+.. .+|+|.||+++||+
T Consensus 397 ~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts 475 (517)
T PRK15317 397 RSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATS 475 (517)
T ss_pred hcCCCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCC
Confidence 55 6999999999999986 346666666643 3 369999999999999999988655555 56899999999999
Q ss_pred CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 316 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 316 ~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+|+|||+|||+..+. +++..|..+|..||.++...+
T Consensus 476 ~p~IyAaGDv~~~~~---------k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 476 VPGVFAAGDCTTVPY---------KQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CCCEEECccccCCCC---------CEEEEhhhhHHHHHHHHHHHH
Confidence 999999999998754 456778899999999987654
No 54
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=3.6e-34 Score=288.93 Aligned_cols=286 Identities=20% Similarity=0.240 Sum_probs=205.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+|||||+||++||..|++.|++ |+|+|+++.... .+.. .++.+.. ..+......+.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~--~~~~~~~~~~~l~ 194 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGG--------VVTY----GIPEFRL--PKEIVVTEIKTLK 194 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------Eeee----cCCCccC--CHHHHHHHHHHHH
Confidence 468999999999999999999999987 999999864211 1100 0111000 0001122345677
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCC-CccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
+.|++++.++.+ .+.+.+.+.. ..||+||+|||+ .|.. ++ +|
T Consensus 195 ~~gv~~~~~~~v------~~~v~~~~~~-~~yd~viiAtGa~~p~~---------------------------~~---ip 237 (449)
T TIGR01316 195 KLGVTFRMNFLV------GKTATLEELF-SQYDAVFIGTGAGLPKL---------------------------MN---IP 237 (449)
T ss_pred hCCcEEEeCCcc------CCcCCHHHHH-hhCCEEEEeCCCCCCCc---------------------------CC---CC
Confidence 889999998643 2344444332 579999999998 5732 22 56
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHH-------hcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIK-------AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 235 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~-------~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~ 235 (461)
|.+.+++++..++.+...+..... ...+++|+|||+|++|+|+|..+.+.|.+|+++.+.++.-.. ..
T Consensus 238 G~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~---- 312 (449)
T TIGR01316 238 GEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR---- 312 (449)
T ss_pred CCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----
Confidence 666677777665544333221110 124689999999999999999999999999999987652111 11
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCChhhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~~~~ 295 (461)
....+.+++.||++++++.++++..+++|++..|++. +| +++++|.||+|+|+.|+..++
T Consensus 313 ~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l 392 (449)
T TIGR01316 313 VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMA 392 (449)
T ss_pred HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhh
Confidence 2233567889999999999999986556666666553 33 269999999999999999877
Q ss_pred hc-cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 296 KG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 296 ~~-~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
+. ++.. .+|+|.||+++||+.|+|||+|||+..+ ..+..|..+|+.||.+|..
T Consensus 393 ~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred hccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 54 4655 5789999999999999999999999754 4678999999999999864
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=285.70 Aligned_cols=290 Identities=22% Similarity=0.237 Sum_probs=207.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+||||||||++||..|+++|++ |+|+|+++... +++. ..+|.+... .........++++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~l~-~~~~~~~~~~~~~ 202 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPG--------GVLV----YGIPEFRLP-KETVVKKEIENIK 202 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC-ccHHHHHHHHHHH
Confidence 368999999999999999999999987 99999876421 1110 011111100 0001123346778
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCC-cEEecCEEEEccCC-CccccccccccccCccccccccCCcccccccccCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGV 161 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~liiAtG~-~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (461)
+.|++++.++.+ .+.+.+.+. +.+.||+||||||+ .| +.++ +
T Consensus 203 ~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~---------------------------~~l~---i 246 (464)
T PRK12831 203 KLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLP---------------------------KFMG---I 246 (464)
T ss_pred HcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCC---------------------------CCCC---C
Confidence 899999998754 223333332 23579999999998 56 3333 6
Q ss_pred CCCCCCCEEEeCCHHHHHHHHHHH------HhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-cCCcccCHHH
Q 012545 162 EGADAKNIFYLREIDDADKLVEAI------KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADI 234 (461)
Q Consensus 162 ~g~~~~~v~~~~~~~~~~~l~~~l------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~~~~~~~~~ 234 (461)
||.+.++|++..++.+...+.... ....+++|+|||+|++|+|+|..+.+.|.+|+++.+.+. .++. ..
T Consensus 247 pG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a----~~ 322 (464)
T PRK12831 247 PGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----RV 322 (464)
T ss_pred CCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC----CH
Confidence 777777888776665443322110 012578999999999999999999999999999988653 2222 11
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC------------------CCc--EEecCEEEEccCCCCChhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------------------DGR--TLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------------------~G~--~i~aD~vi~a~G~~p~~~~ 294 (461)
..+ +.+++.||++++++.++++..+++|++..+++. +|+ ++++|.||+|+|..|+..+
T Consensus 323 -~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~ 400 (464)
T PRK12831 323 -EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI 400 (464)
T ss_pred -HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhh
Confidence 111 345678999999999999986556766555542 222 6999999999999999987
Q ss_pred hhc--cccc-CCCcEEeCCC-CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccC
Q 012545 295 FKG--QVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 361 (461)
Q Consensus 295 ~~~--~~~~-~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 361 (461)
+.. ++.. .+|+|.||++ ++||.|+|||+|||+..+ ..+..|..+|+.||.+|...+.
T Consensus 401 ~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 401 SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 753 4555 5689999987 999999999999999765 4678999999999999987653
No 56
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=1e-30 Score=262.93 Aligned_cols=387 Identities=25% Similarity=0.258 Sum_probs=291.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcCc
Q 012545 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (461)
Q Consensus 8 vvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (461)
++|||+|++|+++|..|++.. +..+|+++..++...|.++.++..+........... .... +....++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~i 68 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLR----------YPPR-FNRATGI 68 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhc----------ccch-hHHhhCC
Confidence 589999999999999988865 467799999998888887776554443321111100 0111 3357789
Q ss_pred EEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCCCCC
Q 012545 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAK 167 (461)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 167 (461)
++..++++..++++.+.+.+.++ .+.||+|++|||+++. .++ +....
T Consensus 69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~---------------------------~~~-----~~~~~ 115 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPR---------------------------PPP-----ISDWE 115 (415)
T ss_pred EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCccc---------------------------CCC-----ccccC
Confidence 99999999999999999999998 7999999999999993 222 34456
Q ss_pred CEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCc
Q 012545 168 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 247 (461)
Q Consensus 168 ~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV 247 (461)
.+++.+...+...+...... .++++|+|+|++|+|+|..+++.|.+|++++..+++++..+.+++.+.+.+.+++.||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~--~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi 193 (415)
T COG0446 116 GVVTLRLREDAEALKGGAEP--PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGV 193 (415)
T ss_pred ceEEECCHHHHHHHHHHHhc--cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCc
Confidence 78999999999998877753 5899999999999999999999999999999999999873228999999999999999
Q ss_pred EEEcCCcEEEEEecCCCCEEE-EEeCCCcEEecCEEEEccCCCCChhhhhccc--cc-CCCcEEeCCCCCCC-CCCEEEe
Q 012545 248 KIIKGTVAVGFTTNADGEVKE-VKLKDGRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAV 322 (461)
Q Consensus 248 ~v~~~~~v~~i~~~~~g~~~~-v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~vya~ 322 (461)
+++++..+.+++...+..... +...++..+++|.+++++|.+||..+.+... .. .+|+|.||++++|+ .++|||+
T Consensus 194 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~ 273 (415)
T COG0446 194 ELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAA 273 (415)
T ss_pred EEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEec
Confidence 999999999998733222211 6778888999999999999999988887664 33 67889999999997 9999999
Q ss_pred CcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCcccCCCCCCeEEEecCCcceEEccCCCC-c-------EE
Q 012545 323 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-D-------TV 394 (461)
Q Consensus 323 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-~-------~~ 394 (461)
|||+..+....+.....+++..|..+++.++.++.+. . .....+++.+...++......|...+ + .+
T Consensus 274 GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 348 (415)
T COG0446 274 GDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVV 348 (415)
T ss_pred cceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEE
Confidence 9999987665444556789999999999999999865 1 23345677788888888877776653 1 11
Q ss_pred EecCCccc--cCCCc--EEEEE--EeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCCh
Q 012545 395 LFGDNDLA--SATHK--FGTYW--IKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 447 (461)
Q Consensus 395 ~~~~~~~~--~~~~~--~~~~~--~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~ 447 (461)
..+..... .+... ..+.. .+.++++|++. ......+..+...++.+..+.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 406 (415)
T COG0446 349 SGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LEVLKRIGALALAIGLGDTVAEL 406 (415)
T ss_pred eccCcccccccCCCCeEEEEEEEcCcccceehhhh-HHHHhhhhhhhhhhhhcCchhhh
Confidence 11111111 01111 22222 26788888887 22223456677777777766553
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=3.8e-32 Score=290.60 Aligned_cols=288 Identities=22% Similarity=0.260 Sum_probs=207.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..+||+||||||||++||..|++.|++ |+|+|+.+... +++.. .+|.+.. .........++++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~~----gip~~rl--p~~~~~~~~~~l~ 492 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLKY----GIPEFRL--PKKIVDVEIENLK 492 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceeee----cCCCCCC--CHHHHHHHHHHHH
Confidence 357999999999999999999999987 99999975321 11110 1111110 0001123345677
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
+.|++++.++.+ .+.+.+++.....||+||||||+. | +.++ +|
T Consensus 493 ~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~---------------------------~~l~---ip 536 (752)
T PRK12778 493 KLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLP---------------------------NFMN---IP 536 (752)
T ss_pred HCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCC---------------------------CCCC---CC
Confidence 889999998654 334555444456799999999984 6 3333 67
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHH------HhcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCc-cCCcccCHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAI------KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW-CMPRLFTADI 234 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~-~~~~~~~~~~ 234 (461)
|.+.+++++..++.....+.... ....+++|+|||+|++|+|+|..+.+.|.+ |+++++.+. .++. ..
T Consensus 537 G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~ 612 (752)
T PRK12778 537 GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA----RL 612 (752)
T ss_pred CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----CH
Confidence 77777888776655443322111 012468999999999999999999999987 999998754 2332 11
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCChhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~~~ 294 (461)
.+ .+.+++.||++++++.+.++..++++++..+++. +| .++++|.||+|+|++|+..+
T Consensus 613 ~e--~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l 690 (752)
T PRK12778 613 EE--VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLV 690 (752)
T ss_pred HH--HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccc
Confidence 11 1346788999999999999987556766666542 22 25999999999999999876
Q ss_pred hhc--cccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 295 FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 295 ~~~--~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+.. ++.. .+|+|.||++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 691 ~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L 749 (752)
T PRK12778 691 PSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYL 749 (752)
T ss_pred cccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHh
Confidence 643 4555 5688999999999999999999999764 457889999999999998665
No 58
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.4e-31 Score=283.49 Aligned_cols=283 Identities=24% Similarity=0.303 Sum_probs=194.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+||||||||++||..|+++|++ |+|+|+.+.... .+. ..+|.+.. ..+......+++.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG--------~lr----~~IP~~Rl--p~evL~~die~l~~ 601 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGG--------VVK----NIIPQFRI--PAELIQHDIEFVKA 601 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCc--------cee----eecccccc--cHHHHHHHHHHHHH
Confidence 57999999999999999999999987 999999865221 110 01122110 00111233467778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+ .+ .+.+.+...||+||||||+++. +.++ ++|.
T Consensus 602 ~GVe~~~gt~V-di-------~le~L~~~gYDaVILATGA~~~--------------------------~~l~---IpG~ 644 (1019)
T PRK09853 602 HGVKFEFGCSP-DL-------TVEQLKNEGYDYVVVAIGADKN--------------------------GGLK---LEGG 644 (1019)
T ss_pred cCCEEEeCcee-EE-------EhhhheeccCCEEEECcCCCCC--------------------------CCCC---CCCc
Confidence 89999998765 22 2223344679999999999861 1112 4554
Q ss_pred CCCCEEEeCC-HHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEccCCc-cCCcccCHHHHHHHHH
Q 012545 165 DAKNIFYLRE-IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEG 240 (461)
Q Consensus 165 ~~~~v~~~~~-~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~-g-~~Vtli~~~~~-~~~~~~~~~~~~~~~~ 240 (461)
+ .++++..+ +.+.....+.+ ..+++|+|||+|++|+|+|..+.+. | .+|+++.|.+. .++. .+++ +.+
T Consensus 645 ~-~gV~saldfL~~~k~~~~~~--~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~ 716 (1019)
T PRK09853 645 N-QNVIKALPFLEEYKNKGTAL--KLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEE 716 (1019)
T ss_pred c-CCceehHHHHHHHhhhcccc--cCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHH
Confidence 3 34543221 22221111112 1478999999999999999998887 4 48999998763 4443 3333 333
Q ss_pred HHHhcCcEEEcCCcEEEEEec--------------CCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCC
Q 012545 241 YYANKGIKIIKGTVAVGFTTN--------------ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKG 304 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~--------------~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g 304 (461)
.+ +.||+++..+.+.++..+ .+|+...+.+.++.++++|.||+|+|.+|+.+++.. ++.. .+|
T Consensus 717 Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G 795 (1019)
T PRK09853 717 AL-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKG 795 (1019)
T ss_pred HH-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCC
Confidence 33 469999999988888631 112222233344568999999999999999998853 4555 568
Q ss_pred cEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 305 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 305 ~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++.||+++||+.|+|||+|||+..+ ..+..|..+|+.||.+|++..
T Consensus 796 ~I~VDetlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 796 WPVVDANGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CEEeCCCcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999765 467899999999999998765
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=3.7e-31 Score=268.40 Aligned_cols=287 Identities=22% Similarity=0.244 Sum_probs=199.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||+||+++|..|++.|++ |+|+|+++... +++.. .+|.+.. .........+++++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~g--------G~l~~----gip~~~~--~~~~~~~~~~~l~~ 202 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAG--------GLLRY----GIPEFRL--PKDIVDREVERLLK 202 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCC--------cEeec----cCCCccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999986 99999986421 01100 0111100 00111234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.+++++.++.+. +.+.+.+.. +.||+||+|||+. +. .++ ++|
T Consensus 203 ~gv~~~~~~~v~------~~v~~~~~~-~~~d~vvlAtGa~~~~---------------------------~~~---i~G 245 (457)
T PRK11749 203 LGVEIRTNTEVG------RDITLDELR-AGYDAVFIGTGAGLPR---------------------------FLG---IPG 245 (457)
T ss_pred cCCEEEeCCEEC------CccCHHHHH-hhCCEEEEccCCCCCC---------------------------CCC---CCC
Confidence 899999986541 223333333 7899999999986 42 222 566
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHh-cCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCc-cCCcccCHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKA-KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEG 240 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~-~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~ 240 (461)
.+.+++++..++............ ..+++|+|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .. ...+
T Consensus 246 ~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~ 319 (457)
T PRK11749 246 ENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVE 319 (457)
T ss_pred ccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHH
Confidence 555666654333222211000011 147899999999999999999999997 8999998654 3332 22 2346
Q ss_pred HHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-------------------CCcEEecCEEEEccCCCCChhhhhc--cc
Q 012545 241 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG--QV 299 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-------------------~G~~i~aD~vi~a~G~~p~~~~~~~--~~ 299 (461)
.+++.||++++++.++++..+ ++.+.+|++. +++++++|.||+|+|.+|+..++.. ++
T Consensus 320 ~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl 398 (457)
T PRK11749 320 HAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGL 398 (457)
T ss_pred HHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCc
Confidence 678899999999999999863 3332333321 3347999999999999999877642 35
Q ss_pred cc-CCCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 300 AE-NKGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 300 ~~-~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
.. .+|+|.||+ +++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 399 ~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 399 ELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred cCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 578999998 8999999999999999643 46788999999999999876644
No 60
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.98 E-value=5.9e-31 Score=283.25 Aligned_cols=287 Identities=19% Similarity=0.190 Sum_probs=205.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||||||+||..|++.|++ |+|+|+.+... +++.. .+|.+.. ..+......+.++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~G--------G~l~y----GIP~~rl--p~~vi~~~i~~l~~ 368 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLG--------GVLRY----GIPEFRL--PNQLIDDVVEKIKL 368 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCC--------ceEEc----cCCCCcC--hHHHHHHHHHHHHh
Confidence 58999999999999999999999997 99999986422 12111 1222211 00111233456778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.|++++.++.+ ++.+.+++.....||+|+||||+. | +.++ +||
T Consensus 369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~p---------------------------r~l~---IpG 412 (944)
T PRK12779 369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLP---------------------------TFMN---VPG 412 (944)
T ss_pred hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCC---------------------------CcCC---CCC
Confidence 89999988543 345666665556899999999995 5 3333 778
Q ss_pred CCCCCEEEeCCHHHHHHHHHHH--------HhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc-cCCcccCHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAI--------KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADI 234 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l--------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~~~~~~~~~ 234 (461)
.+.++|++..++.....+.... ....+++|+|||+|.+|+++|..+.+.|.+|+++.+.+. .++. .
T Consensus 413 ~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa-----~ 487 (944)
T PRK12779 413 EHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA-----R 487 (944)
T ss_pred CcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc-----c
Confidence 7888888876665543332211 112468999999999999999999999999999988753 2222 1
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCC-CCEEEEEe---------C--------CC--cEEecCEEEEccCCCCChhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKL---------K--------DG--RTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~---------~--------~G--~~i~aD~vi~a~G~~p~~~~ 294 (461)
...+.. ..+.||+++++..++++..+++ +.+..+++ . +| .+++||.||+|+|+.|+..+
T Consensus 488 ~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l 566 (944)
T PRK12779 488 VEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM 566 (944)
T ss_pred HHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh
Confidence 122323 3467999999999999976433 34444432 1 22 36999999999999999765
Q ss_pred hhc--cccc-CCCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 295 FKG--QVAE-NKGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 295 ~~~--~~~~-~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
... ++.. .+|.|.||+ +++||.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 567 ~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 567 KDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred hhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHh
Confidence 433 4554 578899996 5899999999999999765 457889999999999997665
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=1.3e-30 Score=255.69 Aligned_cols=290 Identities=23% Similarity=0.269 Sum_probs=196.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++|+|||+|++|+++|..|++.|++ |+++|+.+.... .+.........+. .......+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg-------~~~~~~~~~~~~~-------~~~~~~~~~l~ 79 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGG-------LMLFGIPEFRIPI-------ERVREGVKELE 79 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCc-------eeeecCcccccCH-------HHHHHHHHHHH
Confidence 357999999999999999999999886 999999865321 0100000000000 00112234455
Q ss_pred HcCcEEEcCCeEEEEeC----CCCE-----EEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCccccc
Q 012545 84 EKGIELILSTEIVRADI----ASKT-----LLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~----~~~~-----v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~ 153 (461)
+.+++++.++.+..++. .... +... +..+.||+||||||+. +.+|++
T Consensus 80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~i---------------------- 136 (352)
T PRK12770 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGI---------------------- 136 (352)
T ss_pred hCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCC----------------------
Confidence 67999999877755432 1111 1111 2237899999999994 644443
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHH---------HHhcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCC
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEP 223 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~---------l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~ 223 (461)
||.+.+++++.. +....+... +....+++++|+|+|++|+|+|..|...|.+ |+++++.+
T Consensus 137 --------pg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 137 --------PGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred --------CCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 444444555432 122221110 0011258999999999999999999999987 99998865
Q ss_pred ccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--------------------CCCcEEecCEEE
Q 012545 224 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--------------------KDGRTLEADIVV 283 (461)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--------------------~~G~~i~aD~vi 283 (461)
..... . .....+.|+++||++++++.+++++. ++.+..+++ .+++++++|.||
T Consensus 207 ~~~~~-~----~~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi 279 (352)
T PRK12770 207 INEAP-A----GKYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV 279 (352)
T ss_pred hhhCC-C----CHHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence 43221 1 13345668899999999999999875 344434432 123579999999
Q ss_pred EccCCCCChhhhh--ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 284 VGVGGRPLISLFK--GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 284 ~a~G~~p~~~~~~--~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+++|++|+..+.. .++.. .+|+|.||++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 280 ~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 280 FAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred ECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 9999999998775 34554 5688999999999999999999999864 457889999999999997654
No 62
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=1.7e-30 Score=243.57 Aligned_cols=295 Identities=21% Similarity=0.338 Sum_probs=213.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
++++|||+|+|.+|.+.+..|-..-++ |+||++..++-|. |.++..-...-....+ .+......+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLpS~~vGTve~rSI-----------vEPIr~i~r 118 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLPSTTVGTVELRSI-----------VEPIRAIAR 118 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccCCccccceeehhh-----------hhhHHHHhh
Confidence 468999999999999998888765554 9999999876554 2221111100000000 112223333
Q ss_pred Hc--CcEEEcCCeEEEEeCCCCEEEc----CCC----cEEecCEEEEccCCCccccccccccccCccccccccCCccccc
Q 012545 84 EK--GIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 84 ~~--~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~ 153 (461)
.. ++.++.. +.+.+|++.+.|++ .++ ..+.||+||+|+|+.++.+.|||+.+
T Consensus 119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e----------------- 180 (491)
T KOG2495|consen 119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEE----------------- 180 (491)
T ss_pred ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhh-----------------
Confidence 32 5666665 88999999998765 333 36899999999999997666666543
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHh---------------cCCCcEEEECCCHHHHHHHHHHHHC------
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA---------------KKNGKAVVVGGGYIGLELSAALKIN------ 212 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~---------------~~~~~v~VvG~G~~g~e~a~~l~~~------ 212 (461)
+.+.++..+++++++..+-. .+--+++|||||++|+|+|.+|+..
T Consensus 181 --------------~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~ 246 (491)
T KOG2495|consen 181 --------------NAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLR 246 (491)
T ss_pred --------------chhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHH
Confidence 33455667777777554421 1233789999999999999999763
Q ss_pred --------CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEE
Q 012545 213 --------NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIV 282 (461)
Q Consensus 213 --------g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~v 282 (461)
..+||+++..|++++. |+..+.+..++.+.+.||.+..++.|+.++. +. ..+...|| +++++.++
T Consensus 247 k~yp~l~~~i~vtLiEA~d~iL~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~--I~~~~~~g~~~~iPYG~l 321 (491)
T KOG2495|consen 247 KIYPELKKDIKVTLIEAADHILNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KT--IHAKTKDGEIEEIPYGLL 321 (491)
T ss_pred HhhhcchhheEEEeeccchhHHHH-HHHHHHHHHHHHhhhccceeecccEEEeecC--cE--EEEEcCCCceeeecceEE
Confidence 4689999999999986 8999999999999999999999999999864 22 34555566 57999999
Q ss_pred EEccCCCCChh--hhhccccc-CCCcEEeCCCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 283 VVGVGGRPLIS--LFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 283 i~a~G~~p~~~--~~~~~~~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
+|++|..|..- -+...+.. .+.++.||++||. +.+||||+|||+..+.. .++.+.|.+||.++|+++-
T Consensus 322 VWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 322 VWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred EecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 99999776543 22222222 3458999999998 89999999999944322 1578899999999999874
No 63
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=5.8e-30 Score=260.06 Aligned_cols=294 Identities=21% Similarity=0.268 Sum_probs=197.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||+||++||..|++.|++ |+|+|+.+... +++.. .+|.+.. .........+++.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~~~~ 205 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIG--------GLLRY----GIPDFKL--EKEVIDRRIELMEA 205 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCC--------ceeee----cCCcccC--CHHHHHHHHHHHHh
Confidence 57999999999999999999999987 99999986432 11110 1111100 00011223456788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+. .+. .. +.....||++++|||+... +.++ ++|.
T Consensus 206 ~gv~~~~~~~v~-~~~-----~~-~~~~~~~d~vvlAtGa~~~--------------------------~~l~---ipG~ 249 (471)
T PRK12810 206 EGIEFRTNVEVG-KDI-----TA-EELLAEYDAVFLGTGAYKP--------------------------RDLG---IPGR 249 (471)
T ss_pred CCcEEEeCCEEC-CcC-----CH-HHHHhhCCEEEEecCCCCC--------------------------CcCC---CCCc
Confidence 899999986542 111 11 1113579999999999731 2233 6676
Q ss_pred CCCCEEEeCCHHHHH--HHHHH--H--HhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccCCcccCH----H
Q 012545 165 DAKNIFYLREIDDAD--KLVEA--I--KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----D 233 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~--~l~~~--l--~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~~~~----~ 233 (461)
+..++++..++.... .+... . ....+++|+|||+|++|+|+|..+.+.|. +|++++..+......++. .
T Consensus 250 ~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~ 329 (471)
T PRK12810 250 DLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPY 329 (471)
T ss_pred cCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcc
Confidence 667777643322110 00000 0 01257899999999999999998888886 788776554332211010 0
Q ss_pred H-HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----CC---------cEEecCEEEEccCCCCChh-hhhc
Q 012545 234 I-AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----DG---------RTLEADIVVVGVGGRPLIS-LFKG 297 (461)
Q Consensus 234 ~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~G---------~~i~aD~vi~a~G~~p~~~-~~~~ 297 (461)
+ .....+.+++.||++++++.++++.. +++++..|++. +| +++++|.||+|+|.+|+.. +++.
T Consensus 330 ~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~ 408 (471)
T PRK12810 330 WPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ 408 (471)
T ss_pred cchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccc
Confidence 0 11134667788999999999999975 46666555432 22 4799999999999999853 5543
Q ss_pred -cccc-CCCcEEeC-CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 298 -QVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 298 -~~~~-~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
++.. .+|.+.+| ++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 409 ~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 409 FGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred cCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4555 47889998 79999999999999999854 45778999999999999877644
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=4.5e-30 Score=278.85 Aligned_cols=290 Identities=21% Similarity=0.214 Sum_probs=203.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||||||+||..|+++|++ |+|+|+.+... +++. ..+|.+.. ..+......+++++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~ 492 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD 492 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986422 1111 01222110 01112235567788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCc-EEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
.|++++.++.+ ++.+.+.+-. ...||+||||||+. | +.++ +|
T Consensus 493 ~Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~p---------------------------r~l~---Ip 536 (1006)
T PRK12775 493 IGVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAP---------------------------TFLG---IP 536 (1006)
T ss_pred CCCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCC---------------------------CCCC---CC
Confidence 99999998543 2223322211 24699999999995 5 3333 67
Q ss_pred CCCCCCEEEeCCHHHHHHHHHH-----H--HhcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCCcccCHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEA-----I--KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADI 234 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~-----l--~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~~~~~~~ 234 (461)
|.+.++|++..++.....+... . ....+++|+|||+|++|+++|..+.++|.+ |+++.+....- .+...
T Consensus 537 G~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~ 613 (1006)
T PRK12775 537 GEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI 613 (1006)
T ss_pred CcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH
Confidence 7777788876655544332110 0 012578999999999999999999999975 78887654321 11111
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------C--------C--cEEecCEEEEccCCCCChhhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------D--------G--RTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~--------G--~~i~aD~vi~a~G~~p~~~~~ 295 (461)
.-.+.+++.||++++++.++++..+++|++.++++. + | .++++|.||+|+|+.|+..++
T Consensus 614 --~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~ 691 (1006)
T PRK12775 614 --EEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT 691 (1006)
T ss_pred --HHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh
Confidence 112456788999999999999986556777666542 1 2 269999999999999998766
Q ss_pred hc--cccc-CCCcEEeCC-----CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 296 KG--QVAE-NKGGIETDD-----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 296 ~~--~~~~-~~g~i~vd~-----~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
.. ++.. .+|.|.+|+ +++||.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 692 ~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 692 QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 43 4555 568899996 7899999999999999765 46788999999999999766543
No 65
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=2.8e-29 Score=267.51 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=187.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+||||||||++||..|++.|++ |+|+|+++.... .+.. .+|.+.. .........+++..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG--------~l~~----~IP~~rl--p~e~l~~~ie~l~~ 599 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGG--------VVKN----IIPEFRI--SAESIQKDIELVKF 599 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCc--------eeee----cccccCC--CHHHHHHHHHHHHh
Confidence 47999999999999999999999987 999999864221 1100 0111110 00111233456677
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.+.. ..+.+.+.+...||+||||||+.+. +.++ ++|.
T Consensus 600 ~GVe~~~g~~--------~d~~ve~l~~~gYDaVIIATGA~~~--------------------------~~l~---I~G~ 642 (1012)
T TIGR03315 600 HGVEFKYGCS--------PDLTVAELKNQGYKYVILAIGAWKH--------------------------GPLR---LEGG 642 (1012)
T ss_pred cCcEEEEecc--------cceEhhhhhcccccEEEECCCCCCC--------------------------CCCC---cCCC
Confidence 8999988732 1122333344679999999999861 1111 4443
Q ss_pred CCCCEEEeCCHHHHHHHHHHH-HhcCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEccCCc-cCCcccCHHHHHHHHH
Q 012545 165 DAKNIFYLREIDDADKLVEAI-KAKKNGKAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEG 240 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l-~~~~~~~v~VvG~G~~g~e~a~~l~~~-g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~ 240 (461)
. .+++. ..+.+..+.+.- ....+++|+|||+|++|+|+|..+.+. |. +|+++.+... .++. ...+ +.+
T Consensus 643 ~-~~v~~--avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eE----l~~ 714 (1012)
T TIGR03315 643 G-ERVLK--SLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREE----LEE 714 (1012)
T ss_pred C-cceee--HHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHH----HHH
Confidence 2 23332 222222221110 012589999999999999999998876 74 7999998763 3443 2333 333
Q ss_pred HHHhcCcEEEcCCcEEEEEe-------------cCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhhhc-cccc-CCCc
Q 012545 241 YYANKGIKIIKGTVAVGFTT-------------NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGG 305 (461)
Q Consensus 241 ~l~~~GV~v~~~~~v~~i~~-------------~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~-~~g~ 305 (461)
.+ +.||+++.+..+.++.. +.+|+...+...+..++++|.||+|+|.+|+..+++. ++.. .+|+
T Consensus 715 al-eeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~ 793 (1012)
T TIGR03315 715 AL-EDGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGW 793 (1012)
T ss_pred HH-HcCCEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCC
Confidence 33 47999999888888762 0111111111112236899999999999999988854 4554 5789
Q ss_pred EEeCCC-CCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 306 IETDDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 306 i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+.||++ ++|+.|+|||+|||+..+ ..+..|..+|+.||.+|++..
T Consensus 794 I~VD~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 794 PVVNQATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred EEeCCCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhccc
Confidence 999986 899999999999999765 467889999999999998654
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=9.1e-29 Score=250.46 Aligned_cols=286 Identities=22% Similarity=0.295 Sum_probs=198.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+|++|++||..|++.|++ |+++|+.+... +++.. .+|.+.. .........+++++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~g--------G~l~~----gip~~~~--~~~~~~~~~~~~~~ 203 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIG--------GLLTF----GIPSFKL--DKAVLSRRREIFTA 203 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceeee----cCccccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986421 11110 1111110 00111234567788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+.. .+.+.+ ....||.+|+|||+.+. +.++ ++|.
T Consensus 204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~--------------------------~~~~---i~g~ 247 (467)
T TIGR01318 204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRS--------------------------MRGG---LPGE 247 (467)
T ss_pred CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCC--------------------------CcCC---CCCc
Confidence 9999999876521 122222 22579999999999872 1222 6777
Q ss_pred CCCCEEEeCCHHHH--HHHHH-----H--HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCHH
Q 012545 165 DAKNIFYLREIDDA--DKLVE-----A--IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTAD 233 (461)
Q Consensus 165 ~~~~v~~~~~~~~~--~~l~~-----~--l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~ 233 (461)
+.+++++..++... ..+.. . +....+++++|+|+|++|+++|..+.+.|. +||++++.+.. ++. .+.+
T Consensus 248 ~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e 326 (467)
T TIGR01318 248 DAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE 326 (467)
T ss_pred CCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH
Confidence 77788765332211 11100 0 001246899999999999999999999995 79999987653 443 2222
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCCh-
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI- 292 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~- 292 (461)
.+.+++.||++++++.++++..++++++..+++. +| .++++|.||+|+|++|+.
T Consensus 327 -----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 401 (467)
T TIGR01318 327 -----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAM 401 (467)
T ss_pred -----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcc
Confidence 2446788999999999999976455666555441 12 369999999999999985
Q ss_pred hhhh-ccccc-CCCcEEeC----CCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 293 SLFK-GQVAE-NKGGIETD----DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 293 ~~~~-~~~~~-~~g~i~vd----~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.++. .++.. .+|+|.|| .+++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...
T Consensus 402 ~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 402 PWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred ccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 3333 34555 56889999 68999999999999999765 35678999999999998754
No 67
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=4.9e-29 Score=261.62 Aligned_cols=289 Identities=19% Similarity=0.258 Sum_probs=194.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||+||++||..|++.|++ |+|+|+++... +.+.. .+|.+.. .........+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~l~~ 255 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAG--------GMMRY----GIPRFRL--PESVIDADIAPLRA 255 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCC--------ceeee----cCCCCCC--CHHHHHHHHHHHHH
Confidence 47999999999999999999999987 99999986532 11110 0111110 00001123456677
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|+++..++.+ .+ .+.+.+.. ..||++++|||+.+. +.++ +||.
T Consensus 256 ~Gv~i~~~~~v-~~-----dv~~~~~~-~~~DaVilAtGa~~~--------------------------~~~~---ipG~ 299 (652)
T PRK12814 256 MGAEFRFNTVF-GR-----DITLEELQ-KEFDAVLLAVGAQKA--------------------------SKMG---IPGE 299 (652)
T ss_pred cCCEEEeCCcc-cC-----ccCHHHHH-hhcCEEEEEcCCCCC--------------------------CCCC---CCCc
Confidence 89999888543 21 12222222 359999999999861 1222 5666
Q ss_pred CCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCc-cCCcccCHHHHHHHHHHH
Q 012545 165 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~~l 242 (461)
+..+++...++........ ....+++|+|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.+ +.+.
T Consensus 300 ~~~gv~~~~~~l~~~~~~~--~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e----i~~a- 371 (652)
T PRK12814 300 ELPGVISGIDFLRNVALGT--ALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE----IEEA- 371 (652)
T ss_pred CcCCcEeHHHHHHHhhcCC--cccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----HHHH-
Confidence 6666664322211111000 11257899999999999999999999986 6999998764 3443 2332 2233
Q ss_pred HhcCcEEEcCCcEEEEEecCCCC-EEEEEeC---------------CCc--EEecCEEEEccCCCCChhhhhc-cccc-C
Q 012545 243 ANKGIKIIKGTVAVGFTTNADGE-VKEVKLK---------------DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-N 302 (461)
Q Consensus 243 ~~~GV~v~~~~~v~~i~~~~~g~-~~~v~~~---------------~G~--~i~aD~vi~a~G~~p~~~~~~~-~~~~-~ 302 (461)
.+.||++++++.++++..++++. +..+.+. +|+ ++++|.||+|+|..|+..++.. ++.. .
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~ 451 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSR 451 (652)
T ss_pred HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccC
Confidence 35699999999999987632221 1122221 122 5899999999999999987753 4555 4
Q ss_pred CCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCCCc
Q 012545 303 KGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 364 (461)
Q Consensus 303 ~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 364 (461)
+|+|.||+ +++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+..
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68999996 6899999999999999765 4578899999999999987776543
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=2.1e-28 Score=258.05 Aligned_cols=287 Identities=20% Similarity=0.251 Sum_probs=196.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||||||||+||..|++.|++ |+|+|+.+... +++.. .+|.+.. .........+++++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~G--------G~l~~----gip~~~l--~~~~~~~~~~~~~~ 389 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIG--------GLLTF----GIPAFKL--DKSLLARRREIFSA 389 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceeee----cCCCccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986422 11111 1111110 00011223466778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++++.++.+. ..+.+.+. ...||++++|||+... +.++ +++.
T Consensus 390 ~Gv~~~~~~~v~------~~i~~~~~-~~~~DavilAtGa~~~--------------------------~~l~---i~g~ 433 (654)
T PRK12769 390 MGIEFELNCEVG------KDISLESL-LEDYDAVFVGVGTYRS--------------------------MKAG---LPNE 433 (654)
T ss_pred CCeEEECCCEeC------CcCCHHHH-HhcCCEEEEeCCCCCC--------------------------CCCC---CCCC
Confidence 899999987552 11222111 2479999999998651 1222 5666
Q ss_pred CCCCEEEeCCHH--HHHHH---HHH----HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCHH
Q 012545 165 DAKNIFYLREID--DADKL---VEA----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTAD 233 (461)
Q Consensus 165 ~~~~v~~~~~~~--~~~~l---~~~----l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~ 233 (461)
+..+++...++. ....+ ... .....+++|+|||+|++|+++|..+.+.|. +|+++.+.+.. ++. .+.
T Consensus 434 ~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~- 511 (654)
T PRK12769 434 DAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKK- 511 (654)
T ss_pred CCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHH-
Confidence 667776532211 00000 000 001246899999999999999999999986 69999887653 332 222
Q ss_pred HHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---------CC-----------cEEecCEEEEccCCCCCh-
Q 012545 234 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI- 292 (461)
Q Consensus 234 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~G-----------~~i~aD~vi~a~G~~p~~- 292 (461)
..+.+++.||++++++.++++..++++++..|++. +| .++++|.||+|+|+.|+.
T Consensus 512 ----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 587 (654)
T PRK12769 512 ----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGM 587 (654)
T ss_pred ----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcc
Confidence 23557889999999999999976456776666541 23 269999999999999985
Q ss_pred hhhh-ccccc-CCCcEEeCC----CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 293 SLFK-GQVAE-NKGGIETDD----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 293 ~~~~-~~~~~-~~g~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+++ .++.. .+|.|.||+ ++||+.|+|||+||++..+ ..+..|..+|+.||.+|...+
T Consensus 588 ~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 588 PWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred ccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 3443 34555 578899985 5899999999999999765 457889999999999998654
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=3e-28 Score=255.39 Aligned_cols=284 Identities=21% Similarity=0.265 Sum_probs=193.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|+|||+|+||+++|..|+++|++ |+|+|+++.... .+.. .++.+.. .........++++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG--------~~~~----~i~~~~~--~~~~~~~~~~~~~ 344 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGG--------VMRY----GIPSYRL--PDEALDKDIAFIE 344 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCc--------eEee----cCCcccC--CHHHHHHHHHHHH
Confidence 357899999999999999999999987 999999875321 1100 0111100 0000122346778
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.|++++.++.+.. + +...+ ....||+||+|||+.+. +.++ ++|
T Consensus 345 ~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~--------------------------r~l~---i~G 388 (604)
T PRK13984 345 ALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLG--------------------------RSTR---IPG 388 (604)
T ss_pred HCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCC--------------------------ccCC---CCC
Confidence 89999999876632 1 11111 23589999999998740 2222 666
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHh-----cCCCcEEEECCCHHHHHHHHHHHHCCC------cEEEEccC--CccCCccc
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKA-----KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPE--PWCMPRLF 230 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~-----~~~~~v~VvG~G~~g~e~a~~l~~~g~------~Vtli~~~--~~~~~~~~ 230 (461)
.+..+++.. .+.+..+.+.+.. ..+++|+|||||++|+|+|..+.+++. +|+++... ...++.
T Consensus 389 ~~~~gv~~a--~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~-- 464 (604)
T PRK13984 389 TDHPDVIQA--LPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA-- 464 (604)
T ss_pred cCCcCeEeH--HHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC--
Confidence 666666653 3333333333211 136899999999999999999998753 67876432 222322
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--------C-----------CcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--------D-----------GRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--------~-----------G~~i~aD~vi~a~G~~p~ 291 (461)
... .+.+ +.+.||++++++.++++.. +++++..+++. + ++++++|.||+|+|++|+
T Consensus 465 --~~~-e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 465 --DME-EIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred --CHH-HHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 111 1222 3457999999998888865 45655555442 1 247999999999999999
Q ss_pred hhhhhc----ccccCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 292 ISLFKG----QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 292 ~~~~~~----~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
++++.. .+..++|+|.||+++||++|+|||+|||+..+ ....|..+|+.||.+|...+
T Consensus 540 ~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 540 YSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred hhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 987753 23346788999999999999999999999764 34679999999999997654
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=3.8e-28 Score=246.87 Aligned_cols=294 Identities=23% Similarity=0.281 Sum_probs=195.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+|++|++||..|++.|++ |+|+|+.+.... ++.. .+|.+.. .........+++++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG--------~l~~----gip~~~~--~~~~~~~~~~~~~~ 205 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGG--------LLMY----GIPNMKL--DKAIVDRRIDLLSA 205 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCc--------eeec----cCCCccC--CHHHHHHHHHHHHh
Confidence 37999999999999999999999986 999999864221 0100 0111100 00011233467788
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCC-ccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.|++++.++.+. .+. .. +.....||.|++|||+. + +.++ ++|
T Consensus 206 ~Gv~~~~~~~v~-~~~-----~~-~~~~~~~d~VilAtGa~~~---------------------------~~l~---i~G 248 (485)
T TIGR01317 206 EGIDFVTNTEIG-VDI-----SA-DELKEQFDAVVLAGGATKP---------------------------RDLP---IPG 248 (485)
T ss_pred CCCEEECCCEeC-Ccc-----CH-HHHHhhCCEEEEccCCCCC---------------------------CcCC---CCC
Confidence 999999987653 111 11 11235799999999998 5 3333 667
Q ss_pred CCCCCEEEeCCH-HHHHHHHH--HH-----HhcCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccCCccc-C--
Q 012545 164 ADAKNIFYLREI-DDADKLVE--AI-----KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF-T-- 231 (461)
Q Consensus 164 ~~~~~v~~~~~~-~~~~~l~~--~l-----~~~~~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~~~-~-- 231 (461)
.+.++|++..++ .+...... .+ ....+++|+|||+|++|+|+|..+.+.| .+|+++++.+..+.... +
T Consensus 249 ~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~ 328 (485)
T TIGR01317 249 RELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNP 328 (485)
T ss_pred cCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccC
Confidence 666777765332 22111100 00 0125789999999999999988777776 57999988776543211 0
Q ss_pred -----H--HHHHHHHHHHHhcCcEE-EcCCcEEEEEecCCCCEEEEEe--------CCC-----------cEEecCEEEE
Q 012545 232 -----A--DIAAFYEGYYANKGIKI-IKGTVAVGFTTNADGEVKEVKL--------KDG-----------RTLEADIVVV 284 (461)
Q Consensus 232 -----~--~~~~~~~~~l~~~GV~v-~~~~~v~~i~~~~~g~~~~v~~--------~~G-----------~~i~aD~vi~ 284 (461)
. +.....++..+..|+.+ ++++.+.++..++++++..+++ ++| .++++|.||+
T Consensus 329 ~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~ 408 (485)
T TIGR01317 329 WPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLL 408 (485)
T ss_pred CCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEE
Confidence 0 12223444445567654 4677888887644466666553 134 2799999999
Q ss_pred ccCCC-CChhhhhc-cccc-CCCcEEe-CCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 285 GVGGR-PLISLFKG-QVAE-NKGGIET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 285 a~G~~-p~~~~~~~-~~~~-~~g~i~v-d~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
|+|.. |+..+++. ++.. .+|.+.+ |++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 409 AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L 478 (485)
T TIGR01317 409 AMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYL 478 (485)
T ss_pred ccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHH
Confidence 99986 88877653 4554 4677854 588999999999999999754 457789999999999998766
Q ss_pred CC
Q 012545 361 GG 362 (461)
Q Consensus 361 ~~ 362 (461)
.+
T Consensus 479 ~g 480 (485)
T TIGR01317 479 MG 480 (485)
T ss_pred hc
Confidence 44
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=1.9e-27 Score=249.65 Aligned_cols=288 Identities=21% Similarity=0.266 Sum_probs=196.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
..++|+|||+|++||++|..|++.|++ |+|+|+++... +++.. .+|.+.. .........++++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~l--~~~~~~~~~~~~~ 371 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIG--------GMLTF----GIPPFKL--DKTVLSQRREIFT 371 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCC--------Ceeec----cCCcccC--CHHHHHHHHHHHH
Confidence 358999999999999999999999987 99999997522 11110 1111110 0000122356778
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
..|++++.++.+. +.+.+.+ ....||.+++|||+.+. +.++ +++
T Consensus 372 ~~Gv~~~~~~~v~------~~~~~~~-l~~~~DaV~latGa~~~--------------------------~~~~---i~g 415 (639)
T PRK12809 372 AMGIDFHLNCEIG------RDITFSD-LTSEYDAVFIGVGTYGM--------------------------MRAD---LPH 415 (639)
T ss_pred HCCeEEEcCCccC------CcCCHHH-HHhcCCEEEEeCCCCCC--------------------------CCCC---CCC
Confidence 8999999987552 1222222 23579999999998761 2222 566
Q ss_pred CCCCCEEEeCCHHH-----HHHHHHH----HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCH
Q 012545 164 ADAKNIFYLREIDD-----ADKLVEA----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTA 232 (461)
Q Consensus 164 ~~~~~v~~~~~~~~-----~~~l~~~----l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~ 232 (461)
.+.+++++..++.. ...+.+. +....+++++|+|+|.++++.|..+.++|. +|+++.+.+.. ++. ...
T Consensus 416 ~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~ 494 (639)
T PRK12809 416 EDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK 494 (639)
T ss_pred CccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH
Confidence 66667765322211 1001000 011246899999999999999999888885 79999887654 433 222
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---C------CC-----------cEEecCEEEEccCCCCCh
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---K------DG-----------RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~------~G-----------~~i~aD~vi~a~G~~p~~ 292 (461)
++ ..+++.||++++++.++++..+++|++..+++ . +| .++++|.||+|+|++|+.
T Consensus 495 e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~ 569 (639)
T PRK12809 495 EV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA 569 (639)
T ss_pred HH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc
Confidence 22 23567899999999999998655666655533 1 22 368999999999999975
Q ss_pred -hhhh-ccccc-CCCcEEeCC----CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 293 -SLFK-GQVAE-NKGGIETDD----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 293 -~~~~-~~~~~-~~g~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+++ .++.. .+|.|.||+ ++||+.|+|||+|||+..+ .++..|..+|+.||.+|...+
T Consensus 570 ~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l 634 (639)
T PRK12809 570 MPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLF 634 (639)
T ss_pred cccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHH
Confidence 3443 34555 468899985 4899999999999999765 457889999999999998765
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=1.6e-26 Score=252.69 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=194.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.+||+|||||||||+||.+|++.|++ |+|+|+++... ..+.... ..+++.. .........+.++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~G-------G~~~~~~--~~~~g~~---~~~~~~~~~~~l~~ 227 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAG-------GSLLSEA--ETIDGKP---AADWAAATVAELTA 227 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCC-------Ceeeccc--cccCCcc---HHHHHHHHHHHHhc
Confidence 57999999999999999999999987 99999986532 1111110 0111100 00000122233333
Q ss_pred c-CcEEEcCCeEEEEeCCCCEEEc-----------C---CC--cEEecCEEEEccCCCccccccccccccCccccccccC
Q 012545 85 K-GIELILSTEIVRADIASKTLLS-----------A---TG--LIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRT 147 (461)
Q Consensus 85 ~-~v~~~~~~~v~~i~~~~~~v~~-----------~---~~--~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~ 147 (461)
. +++++.++.|+.++........ . .+ .++.||+||||||+.+
T Consensus 228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~--------------------- 286 (985)
T TIGR01372 228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE--------------------- 286 (985)
T ss_pred CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC---------------------
Confidence 4 5999999899887653321110 0 01 1589999999999999
Q ss_pred CcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCccC
Q 012545 148 LPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCM 226 (461)
Q Consensus 148 ~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~ 226 (461)
+.+| ++|.+.++|++........+ .....++++++|+|+|++++|+|..|.+.|. .|+++++.+.+
T Consensus 287 ------r~~p---ipG~~~pgV~~~~~~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~- 353 (985)
T TIGR01372 287 ------RPLV---FANNDRPGVMLAGAARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV- 353 (985)
T ss_pred ------cCCC---CCCCCCCCcEEchHHHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-
Confidence 4444 67777788887654443321 1111257899999999999999999999995 57888765432
Q ss_pred CcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC----CCcEEecCEEEEccCCCCChhhhhc-cccc
Q 012545 227 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAE 301 (461)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~----~G~~i~aD~vi~a~G~~p~~~~~~~-~~~~ 301 (461)
...+.+.|++.||++++++.++++.. ++.+..|++. ++++++||.|+++.|++||++++.. +..
T Consensus 354 --------~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~- 422 (985)
T TIGR01372 354 --------SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK- 422 (985)
T ss_pred --------hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-
Confidence 23456778999999999999999976 4445555554 4568999999999999999998753 222
Q ss_pred CCCcEEeCCCC-----CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 302 NKGGIETDDFF-----KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 302 ~~g~i~vd~~~-----~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+..|+.. .|+.|+||+||||++.. .+..|..+|+.||..++...
T Consensus 423 ----~~~~~~~~~~~~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 423 ----LAWDAAIAAFLPGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAARAA 471 (985)
T ss_pred ----eeeccccCceecCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHHHHc
Confidence 2222211 37899999999999763 56779999999999986544
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=8.6e-27 Score=233.42 Aligned_cols=293 Identities=19% Similarity=0.268 Sum_probs=193.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHH--cCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
.++|+||||||||++||..|++ .|++ |+|+|+.+. +|. ++...-....+... .....+..++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~-pgG-------lvr~gvaP~~~~~k-----~v~~~~~~~~ 89 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPT-PFG-------LVRSGVAPDHPETK-----NVTNQFSRVA 89 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCC-Ccc-------eEeeccCCCcchhH-----HHHHHHHHHH
Confidence 5799999999999999999987 4665 999999974 221 11111001111100 0011234556
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
...+++++.+..+ ++.+.+++-+ ..||+||+|||+.+. +.++ +|
T Consensus 90 ~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~--------------------------~~l~---Ip 133 (491)
T PLN02852 90 TDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESD--------------------------RRLG---IP 133 (491)
T ss_pred HHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCC--------------------------CCCC---CC
Confidence 6778998887544 2334444333 479999999999861 2233 67
Q ss_pred CCCCCCEEEeCCHHH-------HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC--------------------CC-
Q 012545 163 GADAKNIFYLREIDD-------ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------NI- 214 (461)
Q Consensus 163 g~~~~~v~~~~~~~~-------~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~--------------------g~- 214 (461)
|.+.++|+...++.. ...+...+ ..+++|+|||+|++|+|+|..|.+. +.
T Consensus 134 G~d~~gV~~a~~fl~~~ng~~d~~~~~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 134 GEDLPGVLSAREFVWWYNGHPDCVHLPPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred CCCCCCeEEHHHHHHHhhcchhhhhhhhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 877888887655421 11111111 1478999999999999999998765 54
Q ss_pred cEEEEccCCccCCcccCHHH-------------------------------------HHHHHHHHHh---------cCcE
Q 012545 215 DVSMVYPEPWCMPRLFTADI-------------------------------------AAFYEGYYAN---------KGIK 248 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~~~~~-------------------------------------~~~~~~~l~~---------~GV~ 248 (461)
+|+++.|....-..+...++ .+.+.+...+ .+|.
T Consensus 212 ~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~ 291 (491)
T PLN02852 212 KVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELH 291 (491)
T ss_pred EEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEE
Confidence 59999887642211111111 1122222222 5799
Q ss_pred EEcCCcEEEEEec--CCCCEEEEEeC-----------------CC--cEEecCEEEEccCCC--CChhh-hhc--cccc-
Q 012545 249 IIKGTVAVGFTTN--ADGEVKEVKLK-----------------DG--RTLEADIVVVGVGGR--PLISL-FKG--QVAE- 301 (461)
Q Consensus 249 v~~~~~v~~i~~~--~~g~~~~v~~~-----------------~G--~~i~aD~vi~a~G~~--p~~~~-~~~--~~~~- 301 (461)
+++....++|..+ +++++..+++. +| ++++||.||.++|++ |...+ ++. ++..
T Consensus 292 ~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n 371 (491)
T PLN02852 292 FVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPN 371 (491)
T ss_pred EEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeEC
Confidence 9999999999742 23567666663 12 258999999999997 55543 322 2333
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
.+|+|.+|+.++|+.|+|||+|||..++. ..+..+..+|+.++.+|+...
T Consensus 372 ~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~---------gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 372 VHGRVLSSASGADTEPGLYVVGWLKRGPT---------GIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCceEEeCCCCccCCCCEEEeeeEecCCC---------CeeeecHhhHHHHHHHHHHHH
Confidence 57999999888999999999999998765 367778889999999998654
No 74
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-28 Score=222.07 Aligned_cols=284 Identities=20% Similarity=0.249 Sum_probs=201.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.|||+||||||||-+||.+.+|.|.++ =++-|+-.- ..+..-...++...+...+......+.+..++
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRT--Gl~aerfGG----------QvldT~~IENfIsv~~teGpkl~~ale~Hv~~ 278 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRT--GLVAERFGG----------QVLDTMGIENFISVPETEGPKLAAALEAHVKQ 278 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchh--hhhhhhhCC----------eeccccchhheeccccccchHHHHHHHHHHhh
Confidence 699999999999999999999999874 123333211 11111112222222222222333445666778
Q ss_pred cCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEecCEEEEccCCCccccccccccc------cCccccccccCCccccc
Q 012545 85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVSITSLTSIRS------KHCLCCFFLRTLPLFQV 153 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~------~~~~~~~~~~~~p~~~~ 153 (461)
+.++++...+++.+.+. -..|.+.+|-.+.++.+|++||+++.--.+||-.+ .-||-|+++
T Consensus 279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP-------- 350 (520)
T COG3634 279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP-------- 350 (520)
T ss_pred cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc--------
Confidence 88887776677777653 23688999999999999999999996556666544 335555553
Q ss_pred ccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHH
Q 012545 154 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 233 (461)
Q Consensus 154 ~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~ 233 (461)
. +++|+|+|||||++|+|.|-.|+-.-.+||+++-.+.+-.
T Consensus 351 -------------------------L--------F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA------ 391 (520)
T COG3634 351 -------------------------L--------FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA------ 391 (520)
T ss_pred -------------------------c--------cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh------
Confidence 0 0589999999999999999999988889999875443321
Q ss_pred HHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccCCCCChhhhhccccc-CCCcE
Q 012545 234 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGI 306 (461)
Q Consensus 234 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i 306 (461)
-+.+++.|.. .+|+++.+...+++.. +..++.++...+ | ..++-+-|++-+|..||+++++..++. ..|.|
T Consensus 392 -D~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEI 469 (520)
T COG3634 392 -DAVLQDKLRSLPNVTIITNAQTTEVKG-DGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEI 469 (520)
T ss_pred -HHHHHHHHhcCCCcEEEecceeeEEec-CCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccE
Confidence 1234444443 5799999999999987 334555555432 3 346778899999999999999988888 78999
Q ss_pred EeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 307 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 307 ~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.||.+..||+|+|||+|||+..+. +++..|+-+|..|+...+.
T Consensus 470 ivD~~g~TsvpGvFAAGD~T~~~y---------KQIIIamG~GA~AaL~AFD 512 (520)
T COG3634 470 IVDARGETNVPGVFAAGDCTTVPY---------KQIIIAMGEGAKASLSAFD 512 (520)
T ss_pred EEecCCCcCCCceeecCcccCCcc---------ceEEEEecCcchhhhhhhh
Confidence 999999999999999999998875 3455555666666555443
No 75
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.7e-27 Score=201.32 Aligned_cols=301 Identities=21% Similarity=0.186 Sum_probs=207.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecC-CCCCCCCHh
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPE 80 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (461)
|..+.+|+|||+|||+.+||.++++..++ -+|+|-.-... ......+.......++|+|+..+. ......+.+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence 33456899999999999999999999887 48888652211 122345555566788888876442 223334555
Q ss_pred HHHHcCcEEEcCCeEEEEeCCCCEEEc-CCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCC
Q 012545 81 WYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDF 159 (461)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (461)
...+.|.+++.. .|.+++...+-+.+ .+.+.+.+|.+|+|||+...--.+||-.+.
T Consensus 79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~---------------------- 135 (322)
T KOG0404|consen 79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEG---------------------- 135 (322)
T ss_pred HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcc----------------------
Confidence 566789998886 78888877764332 345569999999999988843333333110
Q ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHH
Q 012545 160 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 239 (461)
Q Consensus 160 ~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~ 239 (461)
..-..++..+.-++.+.-+ .+.|-.+|||||.+++|-|.+|.+.+.+|+++.|.+++-. +.. +.+
T Consensus 136 ---~fWqrGiSaCAVCDGaapi------frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~---Mq~ 200 (322)
T KOG0404|consen 136 ---EFWQRGISACAVCDGAAPI------FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKI---MQQ 200 (322)
T ss_pred ---hHHhcccchhhcccCcchh------hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHH---HHH
Confidence 0001122222112211111 1477889999999999999999999999999999987643 222 223
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCC-----EEEEEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeC-CCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGE-----VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFF 312 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~-----~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~ 312 (461)
+..+.-+|++++++.+.+...+ .+. +..+.+.+.+.++.+-+++++|..|++.+++..++. .+|+|++- ..-
T Consensus 201 ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts 279 (322)
T KOG0404|consen 201 RAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTS 279 (322)
T ss_pred HHhcCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcc
Confidence 4556678999999988887762 222 233444444679999999999999999999998888 68999988 667
Q ss_pred CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHH
Q 012545 313 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 356 (461)
Q Consensus 313 ~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 356 (461)
.||+|++||+||+..... .+...|...|.+||...
T Consensus 280 ~TsvpG~FAAGDVqD~ky---------RQAvTaAgsGciaaldA 314 (322)
T KOG0404|consen 280 LTSVPGVFAAGDVQDKKY---------RQAVTAAGSGCIAALDA 314 (322)
T ss_pred cccccceeeccccchHHH---------HHHHhhhccchhhhhhH
Confidence 899999999999987542 23444445555555443
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=1.3e-25 Score=233.19 Aligned_cols=286 Identities=22% Similarity=0.309 Sum_probs=191.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+||+||++|..|++.|++ |+|+|+.+.... ++.. .+|.+... .+......+++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~~----gip~~~~~--~~~~~~~l~~~~~ 199 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGG--------MMRY----GIPAYRLP--REVLDAEIQRILD 199 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC--------eeee----cCCCccCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999986 999999865321 1110 11111100 0001123355677
Q ss_pred cCcEEEcCCeE-EEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 85 KGIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 85 ~~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
.|+++..++.+ ..+..+ .....||.+++|+|+... ..++ +++
T Consensus 200 ~Gv~~~~~~~~~~~~~~~--------~~~~~~D~Vi~AtG~~~~--------------------------~~~~---i~g 242 (564)
T PRK12771 200 LGVEVRLGVRVGEDITLE--------QLEGEFDAVFVAIGAQLG--------------------------KRLP---IPG 242 (564)
T ss_pred CCCEEEeCCEECCcCCHH--------HHHhhCCEEEEeeCCCCC--------------------------CcCC---CCC
Confidence 89998887654 221111 011358999999998751 1111 455
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCcc-CCcccCHHHHHHHHHH
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGY 241 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~-~~~~~~~~~~~~~~~~ 241 (461)
.+..+++..-.+.. ..........+++++|+|+|..+++.+..+.+++ .+|+++.+.+.. ++. ....+ +.
T Consensus 243 ~~~~gv~~~~~~l~--~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~~-----~~ 314 (564)
T PRK12771 243 EDAAGVLDAVDFLR--AVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEEI-----EE 314 (564)
T ss_pred CccCCcEEHHHHHH--HhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHHH-----HH
Confidence 54455544322211 1110001124789999999999999999999888 679998887642 222 22222 23
Q ss_pred HHhcCcEEEcCCcEEEEEecCCCCE----EEEEe----CCC---------cEEecCEEEEccCCCCChhhhhc--ccccC
Q 012545 242 YANKGIKIIKGTVAVGFTTNADGEV----KEVKL----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAEN 302 (461)
Q Consensus 242 l~~~GV~v~~~~~v~~i~~~~~g~~----~~v~~----~~G---------~~i~aD~vi~a~G~~p~~~~~~~--~~~~~ 302 (461)
+.+.||++++++.+.++..++++.+ ..+.. ++| .++++|.||+|+|..|+..+++. ++...
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~ 394 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVG 394 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccC
Confidence 4567999999999999986444432 12221 222 37999999999999999888763 44446
Q ss_pred CCcEEeCC-CCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 303 KGGIETDD-FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 303 ~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
+|+|.||+ +++|+.|+|||+|||+..+ .++..|..+|+.||.+|...+.+
T Consensus 395 ~G~i~vd~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 395 RGVVQVDPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred CCCEEeCCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcC
Confidence 78999997 7889999999999999754 56889999999999999776654
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=7.8e-25 Score=220.18 Aligned_cols=287 Identities=17% Similarity=0.223 Sum_probs=185.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCC-Cccc---------c----cccC-------CCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YER-PALS---------K----AYLF-------PEGT 60 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~~~---------~----~~~~-------~~~~ 60 (461)
..++|+|||||+|||+||.+|++.|++ |+|+|+++... |.. +... . ...+ +...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 468999999999999999999999987 99999987532 211 0000 0 0000 0000
Q ss_pred CCCCCceeec--------------CCCCCCCCHhHHHHcCcE--EEcCCeEEEEeCCCCE--EEcCC--Cc--EEecCEE
Q 012545 61 ARLPGFHVCV--------------GSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSAT--GL--IFKYQIL 118 (461)
Q Consensus 61 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~--~~--~~~~d~l 118 (461)
..+++++... ..+...++.++.++++++ +.++++|+.++...+. |.+.+ +. +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 1111111110 001122344555667887 7889999999876554 44332 22 4579999
Q ss_pred EEccC--CCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Q 012545 119 VIATG--STVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV 196 (461)
Q Consensus 119 iiAtG--~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~Vv 196 (461)
|+||| +.|.+|+|||+.+ ++| .+++..++.+...+ ++++|+||
T Consensus 166 IvAtG~~~~P~~P~ipG~~~------------------------f~G----~~iHs~~yr~~~~~-------~gk~VvVV 210 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKS------------------------WPG----KQIHSHNYRVPDPF-------KNEVVVVI 210 (461)
T ss_pred EEeccCCCCCcCCCCCCccc------------------------CCc----eEEEecccCCcccc-------CCCEEEEE
Confidence 99999 7898888888753 222 12333333322222 68999999
Q ss_pred CCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE
Q 012545 197 GGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT 276 (461)
Q Consensus 197 G~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~ 276 (461)
|+|.+|+|+|..|...+.+|+++.|.+.... . ..+.....++..+..|..+.. ++ .|+++||++
T Consensus 211 G~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~ 274 (461)
T PLN02172 211 GNFASGADISRDIAKVAKEVHIASRASESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKV 274 (461)
T ss_pred CCCcCHHHHHHHHHHhCCeEEEEEeeccccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCC
Confidence 9999999999999999999999998654311 0 011112234555667776653 44 488999999
Q ss_pred EecCEEEEccCCCCChhhhhcccccCCCcEEeCCCC------C---CC-CCCEEEeCcccccCccccCcceeeccHHHHH
Q 012545 277 LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF------K---TS-ADDVYAVGDVATFPMKLYREMRRVEHVDHAR 346 (461)
Q Consensus 277 i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~------~---t~-~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~ 346 (461)
+++|.||+|||++++.++++. .+.+.+|++. . .. .|+++.+|=.... .....+.
T Consensus 275 ~~~D~Ii~~TGy~~~~pfL~~-----~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E 338 (461)
T PLN02172 275 VYADTIVHCTGYKYHFPFLET-----NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFE 338 (461)
T ss_pred ccCCEEEECCcCCccccccCc-----ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHH
Confidence 999999999999999998763 2345454321 1 13 4899999965322 2344566
Q ss_pred HHHHHHHHHHhccc
Q 012545 347 KSAEQAVKTIMATE 360 (461)
Q Consensus 347 ~~g~~aa~~i~~~~ 360 (461)
.|++.+|+-+.|..
T Consensus 339 ~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 339 IQSKWVAAVLSGRV 352 (461)
T ss_pred HHHHHHHHHHcCCC
Confidence 78998888877653
No 78
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.88 E-value=1.2e-21 Score=177.33 Aligned_cols=307 Identities=18% Similarity=0.245 Sum_probs=208.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
+.++|+|||||.+|+++|..+.+. +...+|.++|+.+.+.|. |.. -+.......+...+. .-.+.......|++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQ-Pgf---TLvGgGl~~l~~srr-~~a~liP~~a~wi~ 111 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQ-PGF---TLVGGGLKSLDSSRR-KQASLIPKGATWIK 111 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccC-cce---EEeccchhhhhhccC-cccccccCCcHHHH
Confidence 468999999999999999988875 345679999999988776 211 111111111100000 00001112233333
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
..|.+.++++++|.+.+|+++.||++|||+|-.-...-|+|+. ++
T Consensus 112 ---------ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~--------------------------Ea 156 (446)
T KOG3851|consen 112 ---------EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLV--------------------------EA 156 (446)
T ss_pred ---------HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChH--------------------------hh
Confidence 2677888999999999999999999999999887666777763 34
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE---------CCCHHHHHHHH-HHHHCCC--cEEEE--ccCCccCCcc
Q 012545 164 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV---------GGGYIGLELSA-ALKINNI--DVSMV--YPEPWCMPRL 229 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~Vv---------G~G~~g~e~a~-~l~~~g~--~Vtli--~~~~~~~~~~ 229 (461)
.+.++|-+..+..-+++..+.+.+.+..+.+.- |+-.-.+-++. .++++|. ++.++ ..-+.++.
T Consensus 157 l~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg-- 234 (446)
T KOG3851|consen 157 LDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG-- 234 (446)
T ss_pred ccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--
Confidence 456678888888888888888887665555432 33333333433 4555663 34444 33333322
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC--cEEecCEEEEccCCCCChhhhhcccccCCCcEE
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIE 307 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G--~~i~aD~vi~a~G~~p~~~~~~~~~~~~~g~i~ 307 (461)
=...++.+++..++++|++.......++..++...+....-+-| ++++++++-+....++...+..+.+.+..|++.
T Consensus 235 -Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvd 313 (446)
T KOG3851|consen 235 -VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVD 313 (446)
T ss_pred -HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCccccee
Confidence 24567888889999999999888888888733221211111225 368899999998888877777777777889999
Q ss_pred eC-CCCCC-CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcccCC
Q 012545 308 TD-DFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 362 (461)
Q Consensus 308 vd-~~~~t-~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 362 (461)
|| ..+|. ..||||++|||.+.|.. +..+.+..|..+.-+|+..--.|
T Consensus 314 VD~~TlQs~kypNVFgiGDc~n~Pns--------KTaAAvaaq~~vv~~nl~~~m~g 362 (446)
T KOG3851|consen 314 VDQSTLQSKKYPNVFGIGDCMNLPNS--------KTAAAVAAQSPVVDKNLTQVMQG 362 (446)
T ss_pred cChhhhccccCCCceeeccccCCCch--------hhHHHHHhcCchhhhhHHHHhcC
Confidence 99 67886 89999999999999875 66666677888888887654444
No 79
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.87 E-value=1.4e-21 Score=199.13 Aligned_cols=300 Identities=17% Similarity=0.268 Sum_probs=161.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--C-Cc-----cccccc--CCCCCCCCCCceeecCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--R-PA-----LSKAYL--FPEGTARLPGFHVCVGS 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~--~-~~-----~~~~~~--~~~~~~~~~~~~~~~~~ 72 (461)
.++|+|||||++||++|..|.+.|++ ++++|+++..+ |. . +. .-..+. .+.....+++++.....
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~ 77 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY 77 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence 36899999999999999999999987 99999998743 21 0 00 000000 01111222222221111
Q ss_pred -------CCCCCCHhHHHHcCcE--EEcCCeEEEEeCCC-------CEEEcC-CCc--EEecCEEEEccC--CCccccc-
Q 012545 73 -------GGERLLPEWYKEKGIE--LILSTEIVRADIAS-------KTLLSA-TGL--IFKYQILVIATG--STVSITS- 130 (461)
Q Consensus 73 -------~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-------~~v~~~-~~~--~~~~d~liiAtG--~~~~~~~- 130 (461)
+...++....+++++. +.++++|.+++... -.|.+. +++ +..||+|++||| ..|.+|.
T Consensus 78 p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 78 PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB---
T ss_pred CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChh
Confidence 1122344455566764 78899999987532 124443 332 457999999999 5677774
Q ss_pred -cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHH
Q 012545 131 -LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 209 (461)
Q Consensus 131 -~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l 209 (461)
+||+++ ++ ..+++++++.+...+ ++|+|+|||+|.+|+++|..+
T Consensus 158 ~~~G~e~------------------------F~----G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el 202 (531)
T PF00743_consen 158 SFPGLEK------------------------FK----GEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVEL 202 (531)
T ss_dssp --CTGGG------------------------HC----SEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHH
T ss_pred hhhhhhc------------------------CC----eeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHH
Confidence 777643 22 347777777665544 789999999999999999999
Q ss_pred HHCCCcEEEEccCCcc-CCccc----------------------CHHHHHHH-HHHHHh------cC-------------
Q 012545 210 KINNIDVSMVYPEPWC-MPRLF----------------------TADIAAFY-EGYYAN------KG------------- 246 (461)
Q Consensus 210 ~~~g~~Vtli~~~~~~-~~~~~----------------------~~~~~~~~-~~~l~~------~G------------- 246 (461)
+....+|++..|.+.+ +++.. +..+.+.+ .+.+.+ .|
T Consensus 203 ~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ 282 (531)
T PF00743_consen 203 SRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPT 282 (531)
T ss_dssp TTTSCCEEEECC--------------------------------------------------------------------
T ss_pred HHhcCCeEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998887543 22211 01111111 111110 01
Q ss_pred -------------cEEEcCCcEEEEEecCCCCEEEEEeCCCcEE-ecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC
Q 012545 247 -------------IKIIKGTVAVGFTTNADGEVKEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF 311 (461)
Q Consensus 247 -------------V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i-~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~ 311 (461)
|++. ..|+++.. .+|.+.||+++ ++|.||+|||++...++++..+.. .++.+..-.+
T Consensus 283 ind~l~~~i~~G~i~vk--~~I~~~~~------~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~ 354 (531)
T PF00743_consen 283 INDELPNRIRSGRIKVK--PDIKRFTE------NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKH 354 (531)
T ss_dssp ----------------E--E-EEEE-S------SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETT
T ss_pred ccccccccccccccccc--cccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111 12333321 25789999875 699999999999999888765433 3333333333
Q ss_pred CC---CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 312 FK---TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 312 ~~---t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+- ...|++..+|=+-... .....+..|++.+|+-+.|..
T Consensus 355 vfp~~~~~ptLafIG~~~~~g----------~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 355 VFPPNLDHPTLAFIGLVQPFG----------SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp TEETETTSTTEEESS-SBSSS-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccccccc----------ccccccccccccccccccccc
Confidence 32 2458899999764321 235567889999988877653
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=3.9e-21 Score=190.90 Aligned_cols=290 Identities=21% Similarity=0.249 Sum_probs=200.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|.|||||||||+||..|.+.|+. |+++|+.+... ..+.+. +|.+.. ..+......+.+++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~G-------Gll~yG-----IP~~kl--~k~i~d~~i~~l~~ 185 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDG-------GLLLYG-----IPDFKL--PKDILDRRLELLER 185 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCc-------eeEEec-----Cchhhc--cchHHHHHHHHHHH
Confidence 47999999999999999999999998 99999986522 112211 222211 11122345677888
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.|++|+.++++- +.++.+.= .-.||.+++|+|+.-. +.++ ++|.
T Consensus 186 ~Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~--------------------------~~l~---i~g~ 229 (457)
T COG0493 186 SGVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKP--------------------------RPLD---IPGE 229 (457)
T ss_pred cCeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCC--------------------------CCCC---CCCc
Confidence 999999987652 22222211 2467999999997541 2233 7888
Q ss_pred CCCCEEEeCCHHHHHHHHHHHH-----h--cCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccCCcc-CCcccCHHHH
Q 012545 165 DAKNIFYLREIDDADKLVEAIK-----A--KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIA 235 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~-----~--~~~~~v~VvG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~ 235 (461)
+.++++...++.........-. . ..+++++|||+|.++++++....+.|. +|+.+.+...- -...++....
T Consensus 230 d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~ 309 (457)
T COG0493 230 DAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAA 309 (457)
T ss_pred CCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccch
Confidence 8888876544433222211110 0 123899999999999999999999997 67777532221 1111233345
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-------------------C--cEEecCEEEEccCCCCChhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------------------G--RTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-------------------G--~~i~aD~vi~a~G~~p~~~~ 294 (461)
+...+...+.|+...+.....++..+++|++..+.+.. | .++++|.|+.|+|+.++...
T Consensus 310 ~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~ 389 (457)
T COG0493 310 QLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATD 389 (457)
T ss_pred hhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccc
Confidence 56677888899999999888999887788776654421 2 25789999999998887543
Q ss_pred h---hccccc-CCCcEEeCCCC-CCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 295 F---KGQVAE-NKGGIETDDFF-KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 295 ~---~~~~~~-~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
. ...+.. ..|.+.+++.+ +|+.|++||.||+..+. ..+..|..+|+.+|+.|-
T Consensus 390 ~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 390 GLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 2 223444 67999999998 99999999999999874 567889999999999876
No 81
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.85 E-value=3.1e-21 Score=170.05 Aligned_cols=267 Identities=25% Similarity=0.358 Sum_probs=177.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
+.+|||||+||.+||..|+..- +.++|+++...+..- |. .+ ..++. .|.. . .....++.
T Consensus 1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~--~i-~~yle--------kfdv--~---eq~~~elg 63 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQ--KI-GQYLE--------KFDV--K---EQNCHELG 63 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHH--HH-HHHHH--------hcCc--c---ccchhhhc
Confidence 4689999999999999999975 567899999886411 10 00 00100 0000 0 00000111
Q ss_pred HHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC
Q 012545 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE 162 (461)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (461)
.+.. + +.+ .|..++..++.+++.+|+.+.|++|++|+|.+|. .. .+
T Consensus 64 ~~f~-~-~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk---------------------------lq----~E 109 (334)
T KOG2755|consen 64 PDFR-R-FLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK---------------------------LQ----VE 109 (334)
T ss_pred ccHH-H-HHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcc---------------------------ee----ec
Confidence 1111 1 122 2555666788999999999999999999999992 11 22
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHH
Q 012545 163 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 242 (461)
Q Consensus 163 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l 242 (461)
+ -.+.+...++.+.++.++..+. +.|+|.|+|.|-+++|++.++. +.+|++....+.+...+|++.+.+.+...|
T Consensus 110 ~-~n~~Iv~irDtDsaQllq~kl~--kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l 184 (334)
T KOG2755|consen 110 G-INPKIVGIRDTDSAQLLQCKLV--KAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINL 184 (334)
T ss_pred C-CCceEEEEecCcHHHHHHHHHh--hcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhh
Confidence 3 2356778889999999999887 5789999999999999999985 678999988888888888888887776666
Q ss_pred HhcC------------cEEEcCCc-----------------------------------EEEEE-ecCCCCEEEEEeCCC
Q 012545 243 ANKG------------IKIIKGTV-----------------------------------AVGFT-TNADGEVKEVKLKDG 274 (461)
Q Consensus 243 ~~~G------------V~v~~~~~-----------------------------------v~~i~-~~~~g~~~~v~~~~G 274 (461)
...+ ++.+.+++ +..+. ..+...+.......|
T Consensus 185 ~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~ 264 (334)
T KOG2755|consen 185 RADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKM 264 (334)
T ss_pred hcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccccccccccc
Confidence 2211 11111100 00000 000010111111111
Q ss_pred --cEEecCEEEEccCCCCChhhhh-ccccc-CCCcEEeCCCCCCCCCCEEEeCcccccC
Q 012545 275 --RTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 329 (461)
Q Consensus 275 --~~i~aD~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~ 329 (461)
..+.+|.+++|+|..||.+++- ..+.. ++|++.||+.|+|+.|++||+||++...
T Consensus 265 ~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 265 ADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT 323 (334)
T ss_pred ccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccC
Confidence 2678999999999999999553 33444 7899999999999999999999998743
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.83 E-value=3.4e-19 Score=187.26 Aligned_cols=284 Identities=13% Similarity=0.127 Sum_probs=161.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--CCcccccccCCCCCCCCCC-ce--eecCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--RPALSKAYLFPEGTARLPG-FH--VCVGSGGER 76 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~--~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ 76 (461)
..++|+||||||||++||..|++.|++ |+++|+.+..+ +. .|--....+.+.-..+.+. +. ...+.. ..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R 457 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VR 457 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-cc
Confidence 357999999999999999999999998 99999864311 11 0000000000000000000 00 000000 00
Q ss_pred CCH------hHHHHc--CcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCC-CccccccccccccCccccccccC
Q 012545 77 LLP------EWYKEK--GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVSITSLTSIRSKHCLCCFFLRT 147 (461)
Q Consensus 77 ~~~------~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~~~g~~~~~~~~~~~~~~ 147 (461)
... ....+. ++.++.+..+ +..++.++-....||+|+||||+ .|
T Consensus 458 ~~k~~l~~i~~il~~g~~v~~~~gv~l------G~dit~edl~~~gyDAV~IATGA~kp--------------------- 510 (1028)
T PRK06567 458 WDKNNLDILRLILERNNNFKYYDGVAL------DFNITKEQAFDLGFDHIAFCIGAGQP--------------------- 510 (1028)
T ss_pred chHHHHHHHHHHHhcCCceEEECCeEE------CccCCHHHHhhcCCCEEEEeCCCCCC---------------------
Confidence 111 111222 3555556431 22222222123679999999999 57
Q ss_pred CcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHH-----h-cCCCcEEEECCCHHHHHHHHHHHH----------
Q 012545 148 LPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK-----A-KKNGKAVVVGGGYIGLELSAALKI---------- 211 (461)
Q Consensus 148 ~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~-----~-~~~~~v~VvG~G~~g~e~a~~l~~---------- 211 (461)
+.++ +||.+..+|++..++........... . ..+++|+|||||++|+|+|.....
T Consensus 511 ------r~L~---IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l 581 (1028)
T PRK06567 511 ------KVLD---IENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFA 581 (1028)
T ss_pred ------CCCC---CCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHH
Confidence 3333 67777777886555332221111110 0 025799999999999999983322
Q ss_pred ----------------------------------------CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEc
Q 012545 212 ----------------------------------------NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 251 (461)
Q Consensus 212 ----------------------------------------~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~ 251 (461)
....|+++.|...--..... .-.+.+ +...+.||+++.
T Consensus 582 ~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~-~~~eEv-~~A~eEGV~f~~ 659 (1028)
T PRK06567 582 KDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYK-LNHEEL-IYALALGVDFKE 659 (1028)
T ss_pred HhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCC-CCHHHH-HHHHHcCcEEEe
Confidence 11128888776532111110 001222 234556999999
Q ss_pred CCcEEEEEecCCCCEEEEEeC--------------C-C---------------cEEecCEEEEccCCCCChhhhhccccc
Q 012545 252 GTVAVGFTTNADGEVKEVKLK--------------D-G---------------RTLEADIVVVGVGGRPLISLFKGQVAE 301 (461)
Q Consensus 252 ~~~v~~i~~~~~g~~~~v~~~--------------~-G---------------~~i~aD~vi~a~G~~p~~~~~~~~~~~ 301 (461)
+..+.++..+++|++.++++. + + .+++||.||+|+|..||+.+..
T Consensus 660 ~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~----- 734 (1028)
T PRK06567 660 NMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE----- 734 (1028)
T ss_pred cCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-----
Confidence 999999987666777766553 1 1 4689999999999999997631
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.++-..||+-.... +++..|+.+|+.++.+|..
T Consensus 735 ---------------~~~s~~~d~~~~f~---------Gtvv~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 735 ---------------DKYSYFGDCNPKYS---------GSVVKALASSKEGYDAINK 767 (1028)
T ss_pred ---------------cccccccCCCCccc---------cHHHHHHHHHHhHHHHHHH
Confidence 11233444443322 4678899999999999853
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.80 E-value=9.1e-21 Score=171.25 Aligned_cols=119 Identities=32% Similarity=0.441 Sum_probs=78.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCC-CCCHhHHHHc
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGE-RLLPEWYKEK 85 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 85 (461)
||||||||+||++||.+|++.+.+ |+++|+.+..++...++....+........ .+. ... ....+.+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~ 71 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHRH-EFL-----PARLFKLVDQLKNR 71 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHHH-HHH-----HHHHGHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEeccccccccccccccccccccccccc-ccc-----cccccccccccccc
Confidence 799999999999999999988876 999998875444333332222211100000 000 000 0122233678
Q ss_pred CcEEEcCCeEEEEeCCCCEE----------EcCCCcEEecCEEEEccCCCccccccccc
Q 012545 86 GIELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVSITSLTSI 134 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~liiAtG~~~~~~~~~g~ 134 (461)
++++..++.+.+++...+.+ ...++.++.||+||+|||+.|..|.|||+
T Consensus 72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~ 130 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGE 130 (201)
T ss_dssp THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTT
T ss_pred eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCC
Confidence 99998888999999888742 23455689999999999999966555553
No 84
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=4e-17 Score=153.84 Aligned_cols=317 Identities=13% Similarity=0.169 Sum_probs=194.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc-cccccCCCCCCCCCCceeec---------
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL-SKAYLFPEGTARLPGFHVCV--------- 70 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------- 70 (461)
||++.+|++.||-||+-|+.|..|...+. .+...+|+.+.+.|+-.++ ...-+.-....++.......
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL 78 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL 78 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence 88899999999999999999999998763 3389999999888874332 11111111111110000000
Q ss_pred -----------------CCCCCCCCHhHHHHcCcEEEcCCeEE---EEeCCCCE---EEcCCCcEEecCEEEEccCCCcc
Q 012545 71 -----------------GSGGERLLPEWYKEKGIELILSTEIV---RADIASKT---LLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 71 -----------------~~~~~~~~~~~~~~~~v~~~~~~~v~---~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.......+..|....--.+..+++|. +++.+... +.+.++..+.++.||+++|.+|+
T Consensus 79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY 158 (436)
T ss_pred HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence 00112234455555555677788888 44444432 55667778999999999999997
Q ss_pred ccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHH
Q 012545 128 ITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 207 (461)
Q Consensus 128 ~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~ 207 (461)
||+ . +.....+.+|+..++..- +..+. ..++|.|||+|.+|.|+-.
T Consensus 159 IP~--~---------------------------f~~l~~~~vfHss~~~~~---~~~~~--~~~~V~ViG~GQSAAEi~~ 204 (436)
T COG3486 159 IPP--C---------------------------FRSLIGERVFHSSEYLER---HPELL--QKRSVTVIGSGQSAAEIFL 204 (436)
T ss_pred CCh--H---------------------------HhCcCccceeehHHHHHh---hHHhh--cCceEEEEcCCccHHHHHH
Confidence 762 1 122223567765543311 11111 2345999999999999988
Q ss_pred HHHHC----CCcEEEEccCCccCCcc--------cCHHHHHH-----------------------------------HHH
Q 012545 208 ALKIN----NIDVSMVYPEPWCMPRL--------FTADIAAF-----------------------------------YEG 240 (461)
Q Consensus 208 ~l~~~----g~~Vtli~~~~~~~~~~--------~~~~~~~~-----------------------------------~~~ 240 (461)
.|... ..++.|+.|+..+++.. |.++..++ +++
T Consensus 205 ~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~ 284 (436)
T COG3486 205 DLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQ 284 (436)
T ss_pred HHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHH
Confidence 88653 34688999998776531 22222111 111
Q ss_pred HHH--hcCcEEEcCCcEEEEEecCCCCEEEEEeC-----CCcEEecCEEEEccCCCCChh-hhh---ccccc-CCCcEEe
Q 012545 241 YYA--NKGIKIIKGTVAVGFTTNADGEVKEVKLK-----DGRTLEADIVVVGVGGRPLIS-LFK---GQVAE-NKGGIET 308 (461)
Q Consensus 241 ~l~--~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~G~~i~aD~vi~a~G~~p~~~-~~~---~~~~~-~~g~i~v 308 (461)
.+. +..+.++.+++|+.++...+|+ ..+.+. ..+++++|.||+|||++...+ ++. ..+.. ++|...|
T Consensus 285 ~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 285 SLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 111 3468899999999999866664 344442 235789999999999885554 442 23344 6889999
Q ss_pred CCCCCCC-----CCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhccc
Q 012545 309 DDFFKTS-----ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 309 d~~~~t~-----~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
+..++.. .-.||+.|-+...... +. +....+...+...++.+++..
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~htHGi--g~----pdLsl~a~Raa~I~~~L~g~~ 414 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELHTHGI--GA----PDLSLGAWRAAVILNSLLGRE 414 (436)
T ss_pred cCceeeecCCCCcceEEEeccccccccc--CC----ccchHHHHHHHHHHHHHhCcC
Confidence 9877652 2369999988765432 11 223333344444556666543
No 85
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.76 E-value=3e-18 Score=176.00 Aligned_cols=287 Identities=22% Similarity=0.281 Sum_probs=170.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|.|||+|||||+||-.|-+.|+. |+|+|+.+... +++... +|..... .-...+-.+++..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~g--------gll~yg----ipnmkld--k~vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVG--------GLLMYG----IPNMKLD--KFVVQRRVDLLEQ 1847 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcC--------ceeeec----CCccchh--HHHHHHHHHHHHh
Confidence 47999999999999999999999997 99999997632 122111 1111100 0001234567778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCCC
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGA 164 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 164 (461)
.||+|+.++++ ++.+.+ |+..-.+|.+|+|+|+.- | +.+| +||.
T Consensus 1848 egi~f~tn~ei------gk~vs~-d~l~~~~daiv~a~gst~----------------------p----rdlp---v~gr 1891 (2142)
T KOG0399|consen 1848 EGIRFVTNTEI------GKHVSL-DELKKENDAIVLATGSTT----------------------P----RDLP---VPGR 1891 (2142)
T ss_pred hCceEEeeccc------cccccH-HHHhhccCeEEEEeCCCC----------------------C----cCCC---CCCc
Confidence 89999998764 333433 333457999999999864 1 5566 8998
Q ss_pred CCCCEEEeCCHHHHHHHHHHHH--------hcCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCc---------cC
Q 012545 165 DAKNIFYLREIDDADKLVEAIK--------AKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW---------CM 226 (461)
Q Consensus 165 ~~~~v~~~~~~~~~~~l~~~l~--------~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~---------~~ 226 (461)
+.+++...-.+.+.. -+..+. ..++|+|+|||||.+|-++...-.++|.+ |.-++--|. ++
T Consensus 1892 d~kgv~fame~l~~n-tk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npw 1970 (2142)
T KOG0399|consen 1892 DLKGVHFAMEFLEKN-TKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPW 1970 (2142)
T ss_pred cccccHHHHHHHHHh-HHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCC
Confidence 888886532222211 011111 12689999999999999988887788865 322222111 12
Q ss_pred Cc---ccCHHHH-HHHHHHHHhcCcEEE-----------------cCCcEE--EEEecCCCCEEEEEeC-CCcEEecCEE
Q 012545 227 PR---LFTADIA-AFYEGYYANKGIKII-----------------KGTVAV--GFTTNADGEVKEVKLK-DGRTLEADIV 282 (461)
Q Consensus 227 ~~---~~~~~~~-~~~~~~l~~~GV~v~-----------------~~~~v~--~i~~~~~g~~~~v~~~-~G~~i~aD~v 282 (461)
|. .|--+.. +...+. .|-..+ .+-+.+ +++.++.|+-.-++.. +.+.++||+|
T Consensus 1971 pqwprvfrvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv 2047 (2142)
T KOG0399|consen 1971 PQWPRVFRVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLV 2047 (2142)
T ss_pred ccCceEEEeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeeccee
Confidence 21 1110111 111111 111111 011111 2222233332222222 2257999999
Q ss_pred EEccCCCCChhhh--hccccc-CCCcEEe-CCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 283 VVGVGGRPLISLF--KGQVAE-NKGGIET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 283 i~a~G~~p~~~~~--~~~~~~-~~g~i~v-d~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
|+|.|+....... +..+.. .++-|.. ++.+.|+++.|||+|||-.+.+ .+..|.++|+.+|+.+=.
T Consensus 2048 ~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2048 ILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred eeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHH
Confidence 9999987655433 233444 3455554 4678899999999999998764 344577899999998754
No 86
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.75 E-value=7e-17 Score=159.83 Aligned_cols=174 Identities=20% Similarity=0.183 Sum_probs=122.6
Q ss_pred HHHHHHHHHhcCCCcEEEECCCHHHHHHH-HHHH----HCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcC
Q 012545 178 ADKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 252 (461)
Q Consensus 178 ~~~l~~~l~~~~~~~v~VvG~G~~g~e~a-~~l~----~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~ 252 (461)
...|.+.++......=.|++.+.+|+|.+ ..++ +.|.+|+++...+..++. .++.+.+.+.+++.|++++.+
T Consensus 203 ~~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g 279 (422)
T PRK05329 203 REALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPG 279 (422)
T ss_pred HHHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeC
Confidence 44555555544334447789999999998 6665 469999999999888874 478899999999999999999
Q ss_pred CcEEEEEecCCCCEEEEEeCCCc--EEecCEEEEccCCCCChhhh-----------hccc------------------cc
Q 012545 253 TVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF-----------KGQV------------------AE 301 (461)
Q Consensus 253 ~~v~~i~~~~~g~~~~v~~~~G~--~i~aD~vi~a~G~~p~~~~~-----------~~~~------------------~~ 301 (461)
++|.+++.. ++.+..+...+|+ .+++|.||+|+|+.++..+. ...+ ..
T Consensus 280 ~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~ 358 (422)
T PRK05329 280 DEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPF 358 (422)
T ss_pred CEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCch
Confidence 999999873 4455555555553 58999999999986554331 0000 00
Q ss_pred CCCcEEeCCCCC-------CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFK-------TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~-------t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..-+|.+|+.+| +..+||||+|++.+++++..... -...|...|-.|+++|.+.
T Consensus 359 ~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 359 LQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAEE 419 (422)
T ss_pred hhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHHh
Confidence 123466666665 45899999999999987632211 1235677888888888754
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2e-17 Score=166.04 Aligned_cols=188 Identities=17% Similarity=0.234 Sum_probs=124.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCc-ccccccCCCCCCCCCCceee--cCC---
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPA-LSKAYLFPEGTARLPGFHVC--VGS--- 72 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~--- 72 (461)
|+++.+||+|||||++|+++|..|+++|.++ ++++||+.... |.+.+ .+-.+..+.....++.++.. ...
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 4567899999999999999999999999865 99999996532 11110 01111111112233333331 000
Q ss_pred -CCCCCCHhHHHHcCcE--EEcCCeEEEEeCCCC----EEEcCCCcE--EecCEEEEccC--CCccccccccccccCccc
Q 012545 73 -GGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATG--STVSITSLTSIRSKHCLC 141 (461)
Q Consensus 73 -~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~liiAtG--~~~~~~~~~g~~~~~~~~ 141 (461)
....+..+.++++++. +..++.|..++.+.+ +|+++++.+ +.+|+||+||| +.|.+|+++|+.+
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~----- 156 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDE----- 156 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccC-----
Confidence 1122345566666654 333445555554442 466666654 45999999999 7788888877642
Q ss_pred cccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 012545 142 CFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 221 (461)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~ 221 (461)
+. ..+++..++.+.+.+ .+|+|+|||+|.+|++++..|.+.|.+|+++.|
T Consensus 157 -------------------f~----g~~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qR 206 (443)
T COG2072 157 -------------------FK----GRILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQR 206 (443)
T ss_pred -------------------CC----ceEEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEec
Confidence 22 225555555555554 799999999999999999999999999999999
Q ss_pred CCcc
Q 012545 222 EPWC 225 (461)
Q Consensus 222 ~~~~ 225 (461)
++..
T Consensus 207 s~~~ 210 (443)
T COG2072 207 SPPH 210 (443)
T ss_pred CCCc
Confidence 8764
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.73 E-value=1.1e-17 Score=151.22 Aligned_cols=178 Identities=23% Similarity=0.341 Sum_probs=101.1
Q ss_pred EEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCcccccccCCC---CCCCCCCc---ee------------
Q 012545 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPE---GTARLPGF---HV------------ 68 (461)
Q Consensus 9 vIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~---~~------------ 68 (461)
+|||||++||++|..|.+.|.++ |+|+|+++... |.+......+..+. ....++.+ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 79999999999999999998754 99999996532 11100000000100 00111110 00
Q ss_pred ecCCCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCC--CccccccccccccCcccccc
Q 012545 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVSITSLTSIRSKHCLCCFF 144 (461)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~--~~~~~~~~g~~~~~~~~~~~ 144 (461)
....+...++..+.+++++++.++++|.++..++. .|++.+++++.+|+||+|||. .|.+|++||.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~---------- 148 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGS---------- 148 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTG----------
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccc----------
Confidence 00001122345566678999999999999987654 577788878999999999995 6655554440
Q ss_pred ccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 145 LRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 145 ~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
.+ ...++..++.+... .++++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 149 -------------------~~-~~~~h~~~~~~~~~-------~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 149 -------------------AF-RPIIHSADWRDPED-------FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -------------------GC-SEEEEGGG-STTGG-------CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred -------------------cc-cceEehhhcCChhh-------cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 11 13444433333222 2689999999999999999999999999999999875
Q ss_pred c
Q 012545 225 C 225 (461)
Q Consensus 225 ~ 225 (461)
+
T Consensus 202 ~ 202 (203)
T PF13738_consen 202 W 202 (203)
T ss_dssp -
T ss_pred C
Confidence 4
No 89
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.73 E-value=4e-17 Score=158.07 Aligned_cols=248 Identities=17% Similarity=0.204 Sum_probs=135.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc-cccccCCCCCCCCCCceeecCC-----------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL-SKAYLFPEGTARLPGFHVCVGS----------- 72 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------- 72 (461)
.+|+|+||.||++|+.|..|.+.+ ..++..+|+.+.+.|+..++ ...-+......++.-.....+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 589999999999999999999986 23499999998877774332 2212221111111110000000
Q ss_pred ---------------CCCCCCHhHHHH-cCcEEEcCCeEEEEeCCCC------EEEcC----CCcEEecCEEEEccCCCc
Q 012545 73 ---------------GGERLLPEWYKE-KGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV 126 (461)
Q Consensus 73 ---------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~liiAtG~~~ 126 (461)
.....+..|+.+ ..-.+..+.+|++|++... .|.+. +++.+.++.||+|+|..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 001112233322 3433777889999976552 35552 346899999999999999
Q ss_pred cccccccccccCccccccccCCcccccccccCCCCCCCC-CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHH
Q 012545 127 SITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 205 (461)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~ 205 (461)
.+|++ +.... .+.+++..++.....- ....++|+|||+|.+|.|+
T Consensus 160 ~iP~~-----------------------------~~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi 205 (341)
T PF13434_consen 160 RIPEW-----------------------------FQDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEI 205 (341)
T ss_dssp ---GG-----------------------------GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHH
T ss_pred CCCcc-----------------------------hhhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHH
Confidence 66532 11111 3678887766544311 1257899999999999999
Q ss_pred HHHHHHCCC--cEEEEccCCccCCc--------ccCHHH-------------------------------HHHH-----H
Q 012545 206 SAALKINNI--DVSMVYPEPWCMPR--------LFTADI-------------------------------AAFY-----E 239 (461)
Q Consensus 206 a~~l~~~g~--~Vtli~~~~~~~~~--------~~~~~~-------------------------------~~~~-----~ 239 (461)
+..|.+.+. +|+++.|++.+.+. .|+++. .+.+ +
T Consensus 206 ~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~ 285 (341)
T PF13434_consen 206 FLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYE 285 (341)
T ss_dssp HHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHH
Confidence 999988764 89999998765432 233322 1111 1
Q ss_pred HHH-HhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-----CcEEecCEEEEccCCC
Q 012545 240 GYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGR 289 (461)
Q Consensus 240 ~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-----G~~i~aD~vi~a~G~~ 289 (461)
+.+ .+..++++.+++|++++..+++. ..+.+.+ ..++++|.||+|||++
T Consensus 286 ~~v~g~~~~~l~~~~~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 286 QRVSGRGRLRLLPNTEVTSAEQDGDGG-VRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHHT---SEEETTEEEEEEEEES-SS-EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred HHhcCCCCeEEeCCCEEEEEEECCCCE-EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 111 23357899999999999866433 3455543 2478999999999974
No 90
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=4.2e-16 Score=154.29 Aligned_cols=241 Identities=18% Similarity=0.252 Sum_probs=148.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC--------cccc--cccCCCCCCCCCCceee
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP--------ALSK--AYLFPEGTARLPGFHVC 69 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~--~~~~~~~~~~~~~~~~~ 69 (461)
|+..++|+|||||+|||++|+.|.+.|++ ++++|+.+... |..+ .+-+ ....+.....++.++..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence 34578999999999999999999999988 99999997632 1111 0000 00111122223333222
Q ss_pred cCC--------CCCCCCHhHHHHcCc--EEEcCCeEEEEeCCCC---EEEcCCC----cEEecCEEEEccCCC--ccccc
Q 012545 70 VGS--------GGERLLPEWYKEKGI--ELILSTEIVRADIASK---TLLSATG----LIFKYQILVIATGST--VSITS 130 (461)
Q Consensus 70 ~~~--------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~---~v~~~~~----~~~~~d~liiAtG~~--~~~~~ 130 (461)
... +...++.+++++.++ .+.+++++..++...+ .|.+.++ ++.-||.|++|||-. |.+|.
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 110 112234455566665 3777888888876652 3444333 367899999999966 88887
Q ss_pred cccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH
Q 012545 131 LTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 210 (461)
Q Consensus 131 ~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g~e~a~~l~ 210 (461)
+||.. +.. ++| .++++.+......+ ..++|+|||.|.+|.|++..++
T Consensus 160 ~~g~~--------------------~~~--f~G----~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~ 206 (448)
T KOG1399|consen 160 IPGPG--------------------IES--FKG----KIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLL 206 (448)
T ss_pred CCCCc--------------------hhh--cCC----cceehhhccCcccc-------cCceEEEECCCccHHHHHHHHH
Confidence 77731 011 343 35555555544333 5799999999999999999999
Q ss_pred HCCCcEEEEccC--CccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 211 INNIDVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 211 ~~g~~Vtli~~~--~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
....+|++..+. ....+. .. ...++..+. .+..+.. ++ .+.++++....+|.+|+|||+
T Consensus 207 ~~ak~v~~~~~~~~~~~~~~-----------~~-~~~~~~~~~--~i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy 267 (448)
T KOG1399|consen 207 RVAKEVHLSVVSPKVHVEPP-----------EI-LGENLWQVP--SIKSFTE--DG---SVFEKGGPVERVDRIIFCTGY 267 (448)
T ss_pred HhccCcceeeeccccccccc-----------ce-eecceEEcc--ccccccC--cc---eEEEcCceeEEeeeEEEeeee
Confidence 888888876541 000000 00 011222222 2444443 33 355677778899999999998
Q ss_pred CCChhhhhc
Q 012545 289 RPLISLFKG 297 (461)
Q Consensus 289 ~p~~~~~~~ 297 (461)
.-...++..
T Consensus 268 ~y~fPfl~~ 276 (448)
T KOG1399|consen 268 KYKFPFLET 276 (448)
T ss_pred Eeecceecc
Confidence 877666653
No 91
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.65 E-value=2.7e-15 Score=139.61 Aligned_cols=291 Identities=18% Similarity=0.217 Sum_probs=168.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.+++|.|||+||||+++|..|.++ +++.+|+++|+.+. ||. +....-..+.|..+.. .+.+...++
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKnv-----intFt~~aE 84 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKNV-----INTFTKTAE 84 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhhH-----HHHHHHHhh
Confidence 457999999999999999999996 45677999999985 322 2222222333332221 123455566
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCCC
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEG 163 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 163 (461)
+.+..++-+..+ ++.+.+.+ -+-.||.+|||.|+... +++. +||
T Consensus 85 ~~rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~d--------------------------R~L~---IPG 128 (468)
T KOG1800|consen 85 HERFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGD--------------------------RRLD---IPG 128 (468)
T ss_pred ccceEEEeccee------cccccHHH-HhhcccEEEEEecCCCC--------------------------cccC---CCC
Confidence 667777766443 22233321 13589999999998762 4554 888
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHH-------hcCCCcEEEECCCHHHHHHHHHHHHC----------------------CC
Q 012545 164 ADAKNIFYLREIDDADKLVEAIK-------AKKNGKAVVVGGGYIGLELSAALKIN----------------------NI 214 (461)
Q Consensus 164 ~~~~~v~~~~~~~~~~~l~~~l~-------~~~~~~v~VvG~G~~g~e~a~~l~~~----------------------g~ 214 (461)
.+..+|++.+.+. .+..-+. .....+|+|||.|++++++|..|..- -.
T Consensus 129 e~l~~V~Sarefv---~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~Vk 205 (468)
T KOG1800|consen 129 EELSGVISAREFV---GWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVK 205 (468)
T ss_pred cccccceehhhhh---hhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcc
Confidence 8888888654432 2211110 11467899999999999999988531 13
Q ss_pred cEEEEccCCccCCccc-------------------------------------CHHHHHHHHHHHHhc---------CcE
Q 012545 215 DVSMVYPEPWCMPRLF-------------------------------------TADIAAFYEGYYANK---------GIK 248 (461)
Q Consensus 215 ~Vtli~~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~---------GV~ 248 (461)
+|+++.|.......+. -+++.+.+.+.++++ +.+
T Consensus 206 dV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k 285 (468)
T KOG1800|consen 206 DVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSK 285 (468)
T ss_pred eEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccc
Confidence 5778777643211100 012233333333331 110
Q ss_pred ---EEcCCcEEEEEecCCCCEEE-------------EEeCCCcEEecCEEEEccCCCCChhhhhccccc-CCCcEEeCCC
Q 012545 249 ---IIKGTVAVGFTTNADGEVKE-------------VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF 311 (461)
Q Consensus 249 ---v~~~~~v~~i~~~~~g~~~~-------------v~~~~G~~i~aD~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~ 311 (461)
+.+.....+|..++++ +.. +.+.+-++++|++++.++|++... ++.++.. ++.++.-|.+
T Consensus 286 ~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~ 362 (468)
T KOG1800|consen 286 QWHLRFFRTPGAILPGADG-VSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVN 362 (468)
T ss_pred hhHHHHhcCHHHhccCccc-ccceEEEeeeehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCC
Confidence 1111112223222111 111 111222579999999999986432 2334444 3344554554
Q ss_pred CCC----CCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 312 FKT----SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 312 ~~t----~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.+. -.|++|++|.|..+|. +.++.+++++..+|+.|...
T Consensus 363 GrV~~s~~~pglY~sGW~k~GP~---------GvIattm~dAf~v~d~I~qD 405 (468)
T KOG1800|consen 363 GRVLVSGCSPGLYASGWVKHGPT---------GVIATTMQDAFEVADTIVQD 405 (468)
T ss_pred ceEEeeccCCceEEEeeeccCCc---------ceeeehhhhHHHHHHHHHHH
Confidence 443 3599999999999875 35566667777777777654
No 92
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.63 E-value=1.3e-14 Score=143.59 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=146.0
Q ss_pred CCeEEEEcCChHHHHHHHHHH-HcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
.++|+||||||||++||.+|. +.|++ |+|+|+.+.. | +++...-....+.... ....+...+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~p-g-------GLvR~GVaPdh~~~k~-----v~~~f~~~~~ 102 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNP-Y-------GLIRYGVAPDHIHVKN-----TYKTFDPVFL 102 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCC-c-------cEEEEeCCCCCccHHH-----HHHHHHHHHh
Confidence 578999999999999999765 55766 9999999752 2 1221111111111100 0011222344
Q ss_pred HcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccccccccccccCccccccccCCcccccccccCCCCC-
Q 012545 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVE- 162 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~- 162 (461)
..+++++.+..+ +..+..++= .-.||.||+|+|+.+.-++|++- + ... .+.
T Consensus 103 ~~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~--------~------------~~~-~~~G 154 (506)
T PTZ00188 103 SPNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQ--------D------------EDK-AVSG 154 (506)
T ss_pred hCCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccc--------c------------cee-eecc
Confidence 567777654322 112222221 23899999999998732221000 0 000 000
Q ss_pred CCC----CCCEEEeCCH-------HHH---HHHHHHHHhc-CCCcEEEECCCHHHHHHHHHHH-----------------
Q 012545 163 GAD----AKNIFYLREI-------DDA---DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK----------------- 210 (461)
Q Consensus 163 g~~----~~~v~~~~~~-------~~~---~~l~~~l~~~-~~~~v~VvG~G~~g~e~a~~l~----------------- 210 (461)
|.+ ..++|..+++ .+. ......+... ..++++|||.|++++++|..|.
T Consensus 155 Ge~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~ 234 (506)
T PTZ00188 155 GETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLK 234 (506)
T ss_pred ccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHH
Confidence 111 1233322111 000 0111111111 3578999999999999999753
Q ss_pred ---HCC-CcEEEEccCCccCCcc----------------------c------CH-----H--------HHHHHHHHHH--
Q 012545 211 ---INN-IDVSMVYPEPWCMPRL----------------------F------TA-----D--------IAAFYEGYYA-- 243 (461)
Q Consensus 211 ---~~g-~~Vtli~~~~~~~~~~----------------------~------~~-----~--------~~~~~~~~l~-- 243 (461)
+.+ .+|+++.|....-..+ + +. . ..+.+.+...
T Consensus 235 ~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~ 314 (506)
T PTZ00188 235 VIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVE 314 (506)
T ss_pred HHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhc
Confidence 223 3578877764321100 0 00 0 1112222221
Q ss_pred --------hcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CC--cEEecCEEEEccCCCCChhhhhcccccC
Q 012545 244 --------NKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAEN 302 (461)
Q Consensus 244 --------~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G--~~i~aD~vi~a~G~~p~~~~~~~~~~~~ 302 (461)
.+-+.+++....++|.. +++++..+++. .| ++++||+|+-++|++...- + ++..+
T Consensus 315 ~~~~~~~~~r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd 390 (506)
T PTZ00188 315 KNKEFYKTYKIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYN 390 (506)
T ss_pred cCccCCCCceEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcc
Confidence 13366777888888875 34677777765 23 3689999999999876421 1 22222
Q ss_pred CCcEEeCCCCCC--CCCCEEEeCcccccCccc
Q 012545 303 KGGIETDDFFKT--SADDVYAVGDVATFPMKL 332 (461)
Q Consensus 303 ~g~i~vd~~~~t--~~~~vya~GD~~~~~~~~ 332 (461)
+. +.. ...++ ..|++|++|.+..+|...
T Consensus 391 ~~-~~n-~~grv~~~~~g~Y~~GWiKrGP~Gv 420 (506)
T PTZ00188 391 QS-VQM-FKEDIGQHKFAIFKAGWFDKGPKGN 420 (506)
T ss_pred cc-CCC-CCCcccCCCCCcEEeeecCcCCCce
Confidence 11 221 11222 379999999999988653
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.63 E-value=2.3e-14 Score=137.26 Aligned_cols=128 Identities=20% Similarity=0.356 Sum_probs=83.6
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---C--cEEecCEEEEccC
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVG 287 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G--~~i~aD~vi~a~G 287 (461)
..+|++....-+- ++...-+.+.+.-++.||+++.+ ++.+|...+++. ..|...| | .++++|+||+++|
T Consensus 400 d~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~G 473 (622)
T COG1148 400 DTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATG 473 (622)
T ss_pred CcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCe-eEEEEEeccCccceecccceEEEeec
Confidence 3567766543332 34445556666666889999977 567777655665 2344433 3 4789999999999
Q ss_pred CCCChhhh---h-ccccc-CCCcEEeC-CCCC---CCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 288 GRPLISLF---K-GQVAE-NKGGIETD-DFFK---TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 288 ~~p~~~~~---~-~~~~~-~~g~i~vd-~~~~---t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
..|....- + .++.. +.|++... ..++ |+.++||.+|-|.++ +.+..+..||..||....
T Consensus 474 mep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP-----------kdI~~siaqa~aAA~kA~ 541 (622)
T COG1148 474 MEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP-----------KDIADSIAQAKAAAAKAA 541 (622)
T ss_pred cccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC-----------ccHHHHHHHhHHHHHHHH
Confidence 99855422 1 24444 57887766 4454 689999999977765 456666777776666544
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.50 E-value=2.8e-13 Score=102.67 Aligned_cols=80 Identities=34% Similarity=0.634 Sum_probs=74.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 271 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~ 271 (461)
+++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.|++.||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 5899999999999999999999999999999999954 89999999999999999999999999999986666 55 998
Q ss_pred CCC
Q 012545 272 KDG 274 (461)
Q Consensus 272 ~~G 274 (461)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
No 95
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.37 E-value=5.6e-11 Score=116.56 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=102.6
Q ss_pred EECCCHHHHHHHHHHH-HCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC
Q 012545 195 VVGGGYIGLELSAALK-INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 273 (461)
Q Consensus 195 VvG~G~~g~e~a~~l~-~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~ 273 (461)
|.|-+.. .++-..|. ..|..|..+--.|. ...+..+.+.+.+.+++.|++++.+.+|.++.. +++++..+.+.+
T Consensus 229 vlG~~~~-~~~~~~L~~~~g~~v~E~ptlPP---Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~ 303 (419)
T TIGR03378 229 CFGLGDG-LELLRELEQATGLTLCELPTMPP---SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRN 303 (419)
T ss_pred eeCCCCh-HHHHHHHHHHHCCCEEeCCCCCC---CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecC
Confidence 3454432 23333333 35888876644333 335788899999999999999999999999886 356666777777
Q ss_pred C--cEEecCEEEEccCCCCChhhh-----------hcccc--------------c----CCCcEEeCCCCCC-----CCC
Q 012545 274 G--RTLEADIVVVGVGGRPLISLF-----------KGQVA--------------E----NKGGIETDDFFKT-----SAD 317 (461)
Q Consensus 274 G--~~i~aD~vi~a~G~~p~~~~~-----------~~~~~--------------~----~~g~i~vd~~~~t-----~~~ 317 (461)
+ .++.+|.+|+|+|..-...++ ...+. . ..-+|.+|+++|. ..+
T Consensus 304 g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~ 383 (419)
T TIGR03378 304 HRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIE 383 (419)
T ss_pred CccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccc
Confidence 6 489999999999976112111 11110 0 1236889999994 389
Q ss_pred CEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHh
Q 012545 318 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 318 ~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 357 (461)
|+||+|-+.+++++..... -...|...|-.||++|+
T Consensus 384 Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 384 NLYAIGAVLGGYDPIFEGC----GSGVAVSTALHAAEQII 419 (419)
T ss_pred cceEechhhcCCChHhcCC----CchhHHHHHHHHHHhhC
Confidence 9999999999887643211 11256677788887763
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.37 E-value=1.4e-11 Score=117.10 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHCCCcEEEEccCCccCCc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 205 LSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 205 ~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
+...+.++|.+.. .....+.++. .-..++.+.+.+.+++.||+++++++|.+++. ++....+.+++|+++.||.+|
T Consensus 84 ~i~~~e~~Gi~~~-e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 84 FIDWVEGLGIALK-EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHhcCCeeE-EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEEEccEEE
Confidence 3344455565533 3334455554 34568889999999999999999999999998 334578999999999999999
Q ss_pred EccCC
Q 012545 284 VGVGG 288 (461)
Q Consensus 284 ~a~G~ 288 (461)
+|+|-
T Consensus 161 lAtGG 165 (408)
T COG2081 161 LATGG 165 (408)
T ss_pred EecCC
Confidence 99993
No 97
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.28 E-value=1.9e-09 Score=105.28 Aligned_cols=313 Identities=17% Similarity=0.236 Sum_probs=163.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCcccccccCCCC--CCCCCC----ceeecCCC--
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEG--TARLPG----FHVCVGSG-- 73 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~-- 73 (461)
++|+|||+|+.|+++|.+|.+.--....|.|+|+.+.. +|+.......+..+.. ....|. |..|.-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999974434459999998763 3442111000000000 000011 11111100
Q ss_pred -----------CC-------------CCCHhHHHHcC---cEEEcCCeEEEEeCC---C-CEEEcCCCcEEecCEEEEcc
Q 012545 74 -----------GE-------------RLLPEWYKEKG---IELILSTEIVRADIA---S-KTLLSATGLIFKYQILVIAT 122 (461)
Q Consensus 74 -----------~~-------------~~~~~~~~~~~---v~~~~~~~v~~i~~~---~-~~v~~~~~~~~~~d~liiAt 122 (461)
.. ..+..++++.. +.++.. +++.+... . ..+...+|....+|-+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00 01111222222 555554 55555544 1 24666788888999999999
Q ss_pred CCCccccccccccccCccccccccCCcccccccccCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEECCCHHH
Q 012545 123 GSTVSITSLTSIRSKHCLCCFFLRTLPLFQVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 202 (461)
Q Consensus 123 G~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v~VvG~G~~g 202 (461)
|..+-.++. .. .. +++.. .-+-..........+ . ...+|+|+|+|.+.
T Consensus 161 gh~~~~~~~--~~------------------~~-----~~~~~-~~ia~~~~~~~ld~v----~--~~drVli~GsgLt~ 208 (474)
T COG4529 161 GHSAPPADP--AA------------------RD-----LKGSP-RLIADPYPANALDGV----D--ADDRVLIVGSGLTS 208 (474)
T ss_pred cCCCCCcch--hh------------------hc-----cCCCc-ceeccccCCcccccc----c--CCCceEEecCCchh
Confidence 976621110 00 00 11110 001111111111111 1 24569999999999
Q ss_pred HHHHHHHHHCCC--cEEEEccCCccC---------C--cccCHHH------HHHHHHHH---------------------
Q 012545 203 LELSAALKINNI--DVSMVYPEPWCM---------P--RLFTADI------AAFYEGYY--------------------- 242 (461)
Q Consensus 203 ~e~a~~l~~~g~--~Vtli~~~~~~~---------~--~~~~~~~------~~~~~~~l--------------------- 242 (461)
++....|.++|. ++|++.|....- + ...+..+ ...+...|
T Consensus 209 ~D~v~~l~~~gh~g~It~iSRrGl~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~ 288 (474)
T COG4529 209 IDQVLVLRRRGHKGPITAISRRGLVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQG 288 (474)
T ss_pred HHHHHHHhccCCccceEEEeccccccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhh
Confidence 999999999875 689988874210 0 0000000 00110111
Q ss_pred -----------------------------------------HhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC-cEEe
Q 012545 243 -----------------------------------------ANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG-RTLE 278 (461)
Q Consensus 243 -----------------------------------------~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G-~~i~ 278 (461)
...|.--+.-.++..|.....|..+.+... +. +++.
T Consensus 289 ~~~wq~l~~~er~rf~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~ 368 (474)
T COG4529 289 QWIWQNLPAVERRRFERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELD 368 (474)
T ss_pred hHHHHhCCHHHHHHHHHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceee
Confidence 111222222335566665455533333322 21 4689
Q ss_pred cCEEEEccCCCCChh-----hh----hccccc---CCCcEEeCCCCCC------CCCCEEEeCcccccCccccCcceeec
Q 012545 279 ADIVVVGVGGRPLIS-----LF----KGQVAE---NKGGIETDDFFKT------SADDVYAVGDVATFPMKLYREMRRVE 340 (461)
Q Consensus 279 aD~vi~a~G~~p~~~-----~~----~~~~~~---~~g~i~vd~~~~t------~~~~vya~GD~~~~~~~~~~~~~~~~ 340 (461)
+|.||-|+|..+... ++ +.++.. ...+|.|++..+. ..+++||+|-.+.+... +. .
T Consensus 369 ~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~---ei---~ 442 (474)
T COG4529 369 VDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFW---EI---D 442 (474)
T ss_pred eeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchh---hh---c
Confidence 999999999654322 22 445544 3678999988774 47899999999876521 11 1
Q ss_pred cHHHHHHHHHHHHHHHh
Q 012545 341 HVDHARKSAEQAVKTIM 357 (461)
Q Consensus 341 ~~~~A~~~g~~aa~~i~ 357 (461)
.+..-..|+..+|..++
T Consensus 443 ~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 443 GVPDVRVQAARLAAQLA 459 (474)
T ss_pred cChHHHHHHHHHHHHHh
Confidence 22233456666777766
No 98
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.21 E-value=1.5e-10 Score=112.68 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=48.9
Q ss_pred EccCCCCChhhhhccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCcce-eeccHHHHHHHHHHHHHHHhccc
Q 012545 284 VGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 284 ~a~G~~p~~~~~~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~ 360 (461)
...|..|..+.++.-... ..|+|.||.+.||+.|++||+|.|+.... .|..+ ...+.-.+.--|..+|++|.+..
T Consensus 320 ~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGl--HGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 320 LKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGL--HGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred HHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeeccccc--ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 345666555444332222 57999999999999999999999996421 11110 11344566667788888888764
No 99
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=105.93 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE-EecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~-i~aD~vi~a~G~~p~ 291 (461)
..++...+.+.+.++|++++++++|+.|+..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 3456777788888889999999999999986565 56788888876 999999999997653
No 100
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.13 E-value=1.9e-10 Score=113.84 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=55.4
Q ss_pred HHHHHHHHCCCcEEEEccCCccCCcc-cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 204 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 204 e~a~~l~~~g~~Vtli~~~~~~~~~~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
++...+.+.|.... ++...++.|.. -..++.+.+.+.+++.||+++++++|.++.. +++....|+++++.++.||.|
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence 55567777777644 44555555542 2457778889999999999999999999987 345557888877889999999
Q ss_pred EEccCCCC
Q 012545 283 VVGVGGRP 290 (461)
Q Consensus 283 i~a~G~~p 290 (461)
|+|+|-..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999654
No 101
>PLN02463 lycopene beta cyclase
Probab=99.09 E-value=1.6e-08 Score=101.77 Aligned_cols=119 Identities=14% Similarity=0.253 Sum_probs=72.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cc-ccc--c--CCCCCCCCCCceeecC-------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LS-KAY--L--FPEGTARLPGFHVCVG------- 71 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-~~-~~~--~--~~~~~~~~~~~~~~~~------- 71 (461)
.+||+||||||||+++|..|++.|++ |+|+|+.+...+.+.. .. ..+ + ...-...++.......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 58999999999999999999999987 9999998654332210 00 000 0 0000000111000000
Q ss_pred -CC----CC----CCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 72 -SG----GE----RLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 72 -~~----~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.. .. ..+.+.+.+.|++++. .+|.+++.... .|.+.+|.++++|.||.|+|..+.
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 00 00 1122223457899875 48888876554 467788888999999999998774
No 102
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.06 E-value=1.9e-09 Score=111.76 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=32.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||+|.||++||.++++.|.+ |+|+||...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 368999999999999999999998876 999999864
No 103
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.06 E-value=4.1e-09 Score=97.11 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=98.5
Q ss_pred HHHHHHHHHHH-CCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcE--E
Q 012545 201 IGLELSAALKI-NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT--L 277 (461)
Q Consensus 201 ~g~e~a~~l~~-~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~--i 277 (461)
-..++-..|+. .+..+..+-..| |..+.-.+.+.+.+.+++.|.-++.+-+|...+. .++++..|.+.+... +
T Consensus 229 d~~~~~~aL~~~~~~~l~elPtlP---PSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~ 304 (421)
T COG3075 229 DNDELWDALNDVLGLALFELPTLP---PSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPL 304 (421)
T ss_pred CcHHHHHHHHHHhCCceeecCCCC---cchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCC
Confidence 33444455554 366666553322 3335667888999999999999999999999887 578888899888754 6
Q ss_pred ecCEEEEccCCCCChh-----------hhh--------------ccccc----CCCcEEeCCCCCCC-----CCCEEEeC
Q 012545 278 EADIVVVGVGGRPLIS-----------LFK--------------GQVAE----NKGGIETDDFFKTS-----ADDVYAVG 323 (461)
Q Consensus 278 ~aD~vi~a~G~~p~~~-----------~~~--------------~~~~~----~~g~i~vd~~~~t~-----~~~vya~G 323 (461)
.+|..|+|+|.--..- .+. ..... ..-++.+|+++|.+ ..|+||+|
T Consensus 305 ~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiG 384 (421)
T COG3075 305 RADFYVLASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIG 384 (421)
T ss_pred ChhHeeeeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHH
Confidence 7899999999411110 111 11000 12357888888863 67999999
Q ss_pred cccccCccccCcceeeccHHHHHHHHHHHHHHHhcc
Q 012545 324 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 324 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.+.++.++...... ...|...|..||+.|++.
T Consensus 385 avlgGfdpi~egcG----sGVaivta~~aa~qi~~~ 416 (421)
T COG3075 385 AVLGGFDPIAEGCG----SGVAIVTALHAAEQIAER 416 (421)
T ss_pred HHhcCCcHHHhcCC----cchHHHHHHHHHHHHHHH
Confidence 99998876432111 123445666677777654
No 104
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.03 E-value=1.4e-09 Score=111.45 Aligned_cols=55 Identities=25% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCcce-eeccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+ .-.....|...|+.|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGLH---GANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccccC---cccccchhHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999973 221 1111 0135667888899999998753
No 105
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.02 E-value=1e-09 Score=111.80 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 358 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.....+...|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~h---G~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGFH---GANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCCC---CCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999974 221 11111 13455677788999998865
No 106
>PRK09897 hypothetical protein; Provisional
Probab=98.98 E-value=9e-09 Score=105.20 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
++|+|||||++|+++|.+|.+.+ ...+|+|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCC
Confidence 58999999999999999999865 3456999999754
No 107
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.97 E-value=6.7e-09 Score=106.83 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=40.4
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.+...+...|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTGVH---GANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccccC---CCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999974 221 11111 135667788899999998654
No 108
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.96 E-value=3.4e-09 Score=110.76 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCCcEEEECCCH--HHHHHHHHHHHCCCcEEEEccCCccCCcc-------------cCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 189 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 189 ~~~~v~VvG~G~--~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
.++++.|+|+++ ++.+++..+...+.+++++.+..+++... -...+.+.+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999998 89999999999998888766554444320 124577778888899999999999
Q ss_pred cEEEEEecCCCCEEEEEeCC--Cc-EEecC-EEEEccCCCCCh
Q 012545 254 VAVGFTTNADGEVKEVKLKD--GR-TLEAD-IVVVGVGGRPLI 292 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~~~--G~-~i~aD-~vi~a~G~~p~~ 292 (461)
.|+++.. +++++.+|...+ ++ .+.++ .||+|+|..++.
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 9999987 367777776643 33 47785 799999976644
No 109
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=5.4e-08 Score=101.38 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|-+..+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~ 39 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP 39 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 434578999999999999999999998887 999999854
No 110
>PRK08275 putative oxidoreductase; Provisional
Probab=98.96 E-value=1.4e-08 Score=105.80 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=36.5
Q ss_pred CCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 303 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 303 ~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.|+|.||..++|++|++||+|||+.... .....|...|+.|+.++..
T Consensus 356 ~Ggi~~d~~~~t~i~gl~a~Ge~~~~~~---------~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 356 ASGVWVNEKAETTVPGLYAAGDMASVPH---------NYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred cCcEEECCCCccCCCCEEECcccCCchh---------HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999975332 3455677778887777654
No 111
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.95 E-value=7e-09 Score=108.76 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~ 42 (461)
.+||||||+|.||++||.++++. |.+ |+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence 47999999999999999999998 776 999999864
No 112
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=2.6e-08 Score=99.56 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+..+.+.+.+.+++.|++++.+++|.++... ++. ..|.+.+| ++.+|.||+|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence 5677888889999999999999999999863 333 36777777 7999999999998653
No 113
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=7.3e-09 Score=108.35 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcC---CCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g---~~~~~V~vie~~~~ 42 (461)
|+...+||+|||||.||++||.++++.| .+ |+|+||...
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~ 42 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP 42 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence 6667899999999999999999999987 55 999999864
No 114
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.94 E-value=2e-07 Score=92.37 Aligned_cols=115 Identities=18% Similarity=0.327 Sum_probs=68.7
Q ss_pred eEEEEcCChHHHHHHHHH--HHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-------CCCCCCceeecCCC----
Q 012545 7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG---- 73 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---- 73 (461)
||||||||+||+++|.+| ++.|.+ |+|||+++..+|.... ...++.... ...++.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 555555 9999998765333221 111111110 01111111111000
Q ss_pred -C-------CCCCH----hHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 74 -G-------ERLLP----EWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 74 -~-------~~~~~----~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
. ...+. +.+...++ .+.++.|.+++.... .+.+.+|.+++++.||-|+|..+
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 0 00111 22222344 455569999987765 57788898999999999999655
No 115
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.94 E-value=1.1e-08 Score=112.22 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=46.0
Q ss_pred cCCCCChhhhhc-----ccc--cCCCcEEeCCCCCCCCCCEEEeCcccccCccccCcceeeccHHHHHHHHHHHHHHHhc
Q 012545 286 VGGRPLISLFKG-----QVA--ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 286 ~G~~p~~~~~~~-----~~~--~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 358 (461)
.|..|+.+.++. ... ...|+|.||.+++|++|++||+|||+.... .+...|...|+.|+.++..
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfAaGE~a~~~~---------nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLACVPH---------NYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEechhccCcch---------hhhhhHHHhHHHHHHHHHH
Confidence 467776665542 111 145899999999999999999999986543 3455677778888777754
No 116
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.93 E-value=2.6e-08 Score=104.08 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=46.8
Q ss_pred cCCCCChhhhhccccc--CCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 286 VGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 286 ~G~~p~~~~~~~~~~~--~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
.|..|....++..... ..|+|.||.+.||++|++||+|+|+... ..|..+. -.....|...|+.|++++...
T Consensus 339 ~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 339 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred cCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 3555554443322222 5799999999999999999999997421 0111111 134567778889998888754
No 117
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92 E-value=9e-09 Score=107.06 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=79.0
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec
Q 012545 189 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 261 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~-------l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 261 (461)
.++.++++|+++++++++.. +.+.+.+|+++...+..... ++..+...+.+.+++.|++++++++++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 35678899999999998865 56667777776554444333 5777888899999999999999999999987
Q ss_pred CCCCEEEEEeC-CCc--EEecC-EEEEccC-CCCChhhhh
Q 012545 262 ADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 296 (461)
Q Consensus 262 ~~g~~~~v~~~-~G~--~i~aD-~vi~a~G-~~p~~~~~~ 296 (461)
+++++.+|... +|+ .+.++ .||+|+| +.+|.++++
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 35677776653 443 47785 6888776 667666554
No 118
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.92 E-value=2.9e-08 Score=102.92 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=40.9
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.....|...|+.|++++...
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLH---GANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccccC---CCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999973 221 11111 135667888899999998754
No 119
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.92 E-value=4.4e-09 Score=103.35 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+.+|.+.+|+ +.+|.||+|+|...+.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence 678888999999999999999999999997 45556669999996 9999999999975433
No 120
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.91 E-value=1.2e-08 Score=106.34 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=40.3
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.+|.+.||++|++||+|+|+... ..|..+. -.....|...|+.|++++...
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999997421 0111110 135667788889998888754
No 121
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.89 E-value=1e-08 Score=105.50 Aligned_cols=55 Identities=27% Similarity=0.241 Sum_probs=39.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|+. ... |..+. -.....|...|+.|++++...
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~h---Ganrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTGLH---GANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccCCC---cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999973 221 11110 124556777889998888654
No 122
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.89 E-value=3.1e-08 Score=103.67 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCCcEEeCCCCC----CCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~----t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||...| |++|++||+|+|+.... .|..+. -.....|...|+.|++++...
T Consensus 341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~--hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 341 SMGGIPTDYTGRVICETIVKGLFAAGECACVSV--HGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred cCCCeEECcCcccccCcccCCeeecccccccCc--CcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 579999999999 99999999999985210 111110 135667888899998888653
No 123
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.88 E-value=8.6e-09 Score=103.90 Aligned_cols=124 Identities=22% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cc----ccccC----CCCCCCCC---Cc
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LS----KAYLF----PEGTARLP---GF 66 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~----~~~~~----~~~~~~~~---~~ 66 (461)
|.+.++||+||||||||++||..|++.|++ |+|+|+.+......++ +. ..++. .....+.. .+
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 555679999999999999999999999987 9999998753322110 00 00000 00000000 00
Q ss_pred ee---------ec--C---CC---CC--------CCCHhHHHHcCcEEEcCCeEEEEeCCCCEE--EcCCCcEEecCEEE
Q 012545 67 HV---------CV--G---SG---GE--------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQILV 119 (461)
Q Consensus 67 ~~---------~~--~---~~---~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~li 119 (461)
.. .. . .. .. ..+.+..++.|++++.+++|+++..+...+ ...++.++.+|.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence 00 00 0 00 00 012223345799999999999986544432 33456679999999
Q ss_pred EccCCCcc
Q 012545 120 IATGSTVS 127 (461)
Q Consensus 120 iAtG~~~~ 127 (461)
.|+|....
T Consensus 158 ~A~G~~s~ 165 (428)
T PRK10157 158 LADGVNSI 165 (428)
T ss_pred EEeCCCHH
Confidence 99998763
No 124
>PRK06847 hypothetical protein; Provisional
Probab=98.87 E-value=1e-08 Score=101.79 Aligned_cols=123 Identities=19% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cc-------------cccc-----------
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS-------------KAYL----------- 55 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~-------------~~~~----------- 55 (461)
|.+.+||+|||||++|+++|..|++.|++ |+|+|+.+...-.... +. ..+.
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 55688999999999999999999999987 9999998642110000 00 0000
Q ss_pred CCCCCCCCCCcee-ecC-C-----------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEE
Q 012545 56 FPEGTARLPGFHV-CVG-S-----------GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI 120 (461)
Q Consensus 56 ~~~~~~~~~~~~~-~~~-~-----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lii 120 (461)
+......+..+.. ... . .....+.+.+.+.+++++.++++..++.+.. .+.+.+++++.+|.+|.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 0000000000000 000 0 0001122333457899999999999876554 35667888899999999
Q ss_pred ccCCCcc
Q 012545 121 ATGSTVS 127 (461)
Q Consensus 121 AtG~~~~ 127 (461)
|+|..+.
T Consensus 158 AdG~~s~ 164 (375)
T PRK06847 158 ADGLYSK 164 (375)
T ss_pred CcCCCcc
Confidence 9998773
No 125
>PRK10015 oxidoreductase; Provisional
Probab=98.86 E-value=1.3e-08 Score=102.65 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cc----ccccCCCC-----CCC-CCC--
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LS----KAYLFPEG-----TAR-LPG-- 65 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~----~~~~~~~~-----~~~-~~~-- 65 (461)
|++.++||+||||||||++||+.|++.|++ |+|+|+.+......++ ++ ..+ .+.. ..+ ...
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l-~~~~~~~~~i~~~~~~~~ 76 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAI-IPGFAASAPVERKVTREK 76 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHH-cccccccCCcccccccee
Confidence 555679999999999999999999999987 9999998753322111 00 001 0000 000 000
Q ss_pred c---------eeecCC-----------CC-CCC----CHhHHHHcCcEEEcCCeEEEEeCCCCEEE--cCCCcEEecCEE
Q 012545 66 F---------HVCVGS-----------GG-ERL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQIL 118 (461)
Q Consensus 66 ~---------~~~~~~-----------~~-~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~l 118 (461)
+ ...... .. ... +.+..++.|++++.++.|+.+..++..+. ..++.++.+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~V 156 (429)
T PRK10015 77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVV 156 (429)
T ss_pred EEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEE
Confidence 0 000000 00 001 22334567999999999998876544332 234457999999
Q ss_pred EEccCCCc
Q 012545 119 VIATGSTV 126 (461)
Q Consensus 119 iiAtG~~~ 126 (461)
|+|+|...
T Consensus 157 I~AdG~~s 164 (429)
T PRK10015 157 ILADGVNS 164 (429)
T ss_pred EEccCcch
Confidence 99999866
No 126
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.85 E-value=5.1e-08 Score=97.44 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
..+.+.+.+.+++.|++++.+++|++++.++++ ..+++++|+++.+|.||.|.|..+..
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEEecCCCchH
Confidence 456667777888889999999999999873333 45788888899999999999998754
No 127
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.82 E-value=1.6e-08 Score=100.96 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cccc----ccCCCCC---CCCCCcee------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKA----YLFPEGT---ARLPGFHV------ 68 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~~~----~~~~~~~---~~~~~~~~------ 68 (461)
.|||+||||||||++||+.|++.|++ |+|+|+.+...+..++ ++.. +...... ..+.+...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 79999999999999999999999976 9999998775554333 1110 1000000 00000000
Q ss_pred -ecCCC---C----CCC----CHhHHHHcCcEEEcCCeEEEEeCCCCE--E-EcCCCcEEecCEEEEccCCCc
Q 012545 69 -CVGSG---G----ERL----LPEWYKEKGIELILSTEIVRADIASKT--L-LSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 69 -~~~~~---~----~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+... . ... +.+...+.|.+++.++.+..+..++.. + ...++.+++++.+|.|+|...
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 00000 0 111 233445689999999999988765533 2 223335799999999999876
No 128
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.82 E-value=5.1e-09 Score=110.49 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|....+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~ 39 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA 39 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence 555679999999999999999999999987 999999754
No 129
>PLN02815 L-aspartate oxidase
Probab=98.81 E-value=2.8e-08 Score=103.52 Aligned_cols=54 Identities=26% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHhc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 358 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 358 (461)
..|+|.+|.+.||++|++||+|+|+. ... |..+. -.+...+...|+.|+.++..
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G~h---Ganrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTGLH---GANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccCCC---CCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999974 221 11110 13566777888888888764
No 130
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.81 E-value=6e-08 Score=93.06 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=81.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc---c--------CCc----ccCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
+++|||+|+.|+++|..|++.|.+|+++++.+. + .+. ..+.++.+.+.+.+++.|+++++ .+|+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997651 1 121 12367888889999999999998 8899
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
+++. ++....+++.+++++.+|.+|+|+|.+|+...+
T Consensus 81 ~v~~--~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 81 KVDL--SDRPFKVKTGDGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEe--cCCeeEEEeCCCCEEEeCEEEECCCCCcccCCC
Confidence 9987 333356777888899999999999998865433
No 131
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.80 E-value=2.6e-07 Score=92.71 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=55.1
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
-..++.+.+.+.++..|.+++++++|++|..++++++..|++++|+++.|+.||......|..
T Consensus 230 G~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 230 GLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred CHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence 356788999999999999999999999998755677788999999999999999988887763
No 132
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.80 E-value=2.1e-08 Score=103.93 Aligned_cols=53 Identities=26% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccc-cCccccCccee-eccHHHHHHHHHHHHHHHh
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~ 357 (461)
..|+|.||.+.||++|++||+|+|+. ..+ |..+- -.....+..-|+.|+..+.
T Consensus 346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G~h---GanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 346 WMGGVVTDLNNQTSIPGLYAVGETASTGVH---GANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred cCCCeeECCCCcccCCCEEECccccccCCC---cccchHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999974 221 11110 0234566677888888775
No 133
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.79 E-value=4.3e-08 Score=102.16 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=29.5
Q ss_pred eEEEEcCChHHHHHHHHHH----HcCCCCCcEEEEeCCCC
Q 012545 7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKEAV 42 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~----~~g~~~~~V~vie~~~~ 42 (461)
||||||||.|||+||++++ +.|.+ |+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence 7999999999999999998 56776 999999864
No 134
>PRK07190 hypothetical protein; Provisional
Probab=98.78 E-value=2.8e-08 Score=101.57 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCCc-cc---------cccc--------------
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERPA-LS---------KAYL-------------- 55 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~~-~~---------~~~~-------------- 55 (461)
|.+..+||+||||||+|+++|..|++.|.+ |+|+|+.+... ..+.. +. .+++
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 656679999999999999999999999987 99999987421 11110 00 0000
Q ss_pred --CCCCC-C-------CCCCc----eeecCCCC-CCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEE
Q 012545 56 --FPEGT-A-------RLPGF----HVCVGSGG-ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (461)
Q Consensus 56 --~~~~~-~-------~~~~~----~~~~~~~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (461)
..... . ..+.. ...++... ...+.+.+++.|+++..+++++.+..+.. .+.+.+++++.+++|
T Consensus 78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v 157 (487)
T PRK07190 78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV 157 (487)
T ss_pred EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence 00000 0 00000 00000000 00122344567999999999999976554 345567778999999
Q ss_pred EEccCCCcc
Q 012545 119 VIATGSTVS 127 (461)
Q Consensus 119 iiAtG~~~~ 127 (461)
|.|.|++..
T Consensus 158 VgADG~~S~ 166 (487)
T PRK07190 158 IGADGSRSF 166 (487)
T ss_pred EECCCCCHH
Confidence 999998874
No 135
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.76 E-value=4.1e-08 Score=93.91 Aligned_cols=119 Identities=24% Similarity=0.416 Sum_probs=70.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cccc----c----------------ccCCCC-CCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALSK----A----------------YLFPEG-TAR 62 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~~~----~----------------~~~~~~-~~~ 62 (461)
+||+|||||++|+++|..|++.|.+ |+|+|+.+......+ .+.. . +..... ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 6999999999999999999999987 999999975322100 0000 0 000000 000
Q ss_pred CC---CceeecC-CCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcC-CCcEEecCEEEEccCCCcc
Q 012545 63 LP---GFHVCVG-SGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSA-TGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 63 ~~---~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~-~~~~~~~d~liiAtG~~~~ 127 (461)
.+ .....+. ......+.+.+.+.|++++.++++..+..+... +.+. ++.++++|++|.|+|....
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 00 0000000 000112333445678999999999987655543 3333 3457999999999998763
No 136
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.75 E-value=5.5e-07 Score=84.02 Aligned_cols=174 Identities=18% Similarity=0.155 Sum_probs=112.1
Q ss_pred HHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc---------------------------------
Q 012545 182 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------- 228 (461)
Q Consensus 182 ~~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------------------- 228 (461)
.+.|.......|+|||+|+.|+-+|..+++.|.+|.++++.+.+...
T Consensus 17 ~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~ 96 (257)
T PRK04176 17 FEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED 96 (257)
T ss_pred HHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence 33444444568999999999999999999999999999987653211
Q ss_pred ----ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CCcEEecCEEEEccCCCCChh
Q 012545 229 ----LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 229 ----~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.-..++...+.+..++.|++++.++++.++..++++++.++... +..++.|+.||.|+|......
T Consensus 97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 00124455667777889999999999999986444466666543 224799999999999655432
Q ss_pred -hhhc-----cccc-CCCcE--------EeCCCCCCCCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHHHHHHh
Q 012545 294 -LFKG-----QVAE-NKGGI--------ETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIM 357 (461)
Q Consensus 294 -~~~~-----~~~~-~~g~i--------~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~ 357 (461)
.+.. .... ..... .|+.+-+ -.|++|++|=++..-... +|+ +....=..+|+.||+.++
T Consensus 177 ~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~----~rmg~~fg~m~~sg~~~a~~~~ 251 (257)
T PRK04176 177 SVLARKGPELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGL----PRMGPIFGGMLLSGKKVAELIL 251 (257)
T ss_pred HHHHHHcCCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCC----CccCchhHhHHHhHHHHHHHHH
Confidence 2211 1111 11111 2222222 289999999888643211 111 223333458999999888
Q ss_pred ccc
Q 012545 358 ATE 360 (461)
Q Consensus 358 ~~~ 360 (461)
..+
T Consensus 252 ~~~ 254 (257)
T PRK04176 252 EKL 254 (257)
T ss_pred HHh
Confidence 654
No 137
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.73 E-value=5.7e-08 Score=101.62 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=66.9
Q ss_pred CCcEEEECCCHHH-HHHHHHHHHCCCcEEEEccCCccCCc-------------ccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMPR-------------LFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g-~e~a~~l~~~g~~Vtli~~~~~~~~~-------------~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
..++.++|+++++ .+++..+...+..+.+..+..+++.. ..+..+.+.+.+.+++.|++++.++++
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4566678877665 66776666555544433222211110 124567788889999999999999999
Q ss_pred EEEEecCCCCEEEEEeC--CCc-EEec-CEEEEccCCCCC
Q 012545 256 VGFTTNADGEVKEVKLK--DGR-TLEA-DIVVVGVGGRPL 291 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~--~G~-~i~a-D~vi~a~G~~p~ 291 (461)
+++.. +++++.+|... ++. ++.+ +.||+|+|.-.+
T Consensus 241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 99886 36777666553 343 5788 999999995543
No 138
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.72 E-value=9.9e-07 Score=88.63 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
..+...+.+.+++.|++++.+++|+++...+++.+..|++.+| ++.++.||+|+|..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 4455667788899999999999999997644566667888888 69999998887754
No 139
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.71 E-value=5.6e-07 Score=90.73 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|++++.+ ++.+..+++.++ ++.+|.||+|+|...
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 3466777888889999999999999999863 444556777655 799999999999754
No 140
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.70 E-value=6e-08 Score=90.50 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-----------CCCCC------Cce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-----------TARLP------GFH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-----------~~~~~------~~~ 67 (461)
.+||+||||||||++||.+|++.|++ |+|+|+....... ......+.... ...++ +..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg--~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG--MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc--cccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 68999999999999999999999987 9999998653211 00011111000 00000 000
Q ss_pred eecCCCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC-EE---EcC-----------CCcEEecCEEEEccCCCc
Q 012545 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TL---LSA-----------TGLIFKYQILVIATGSTV 126 (461)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~~~~~~~d~liiAtG~~~ 126 (461)
..........+.+...+.|++++.++.+.++..++. .+ ... +..++.++.+|.|||...
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 000000011123344568999999999888764332 22 111 224689999999999766
No 141
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.70 E-value=2.5e-07 Score=89.45 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=67.0
Q ss_pred HHHHCCCcEEEEc-cCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 208 ALKINNIDVSMVY-PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 208 ~l~~~g~~Vtli~-~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
.+...+....++. +.+++... ..+.+.+.+.+.+++.|++++++++|.+++. +++.+..|.+++|.++++|.||+|+
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD-~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTD-ILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred HHHHhCCCceeeeccccccCcc-chHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEcc
Confidence 3344455544443 33454443 5788899999999999999999999999997 4555678999999999999999999
Q ss_pred CCCCChhhh
Q 012545 287 GGRPLISLF 295 (461)
Q Consensus 287 G~~p~~~~~ 295 (461)
|+....++-
T Consensus 227 Grsg~dw~~ 235 (486)
T COG2509 227 GRSGRDWFE 235 (486)
T ss_pred CcchHHHHH
Confidence 998877643
No 142
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.69 E-value=4.2e-07 Score=93.01 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEEEccC-CCCChhhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG-GRPLISLFK 296 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi~a~G-~~p~~~~~~ 296 (461)
...+.+.+.+.+++.|++++.+++++++.. +++++..+... ++ ..+.++.||+|+| +..|.+++.
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 356777888888999999999999999987 46777777663 33 3689999999998 445544443
No 143
>PRK06184 hypothetical protein; Provisional
Probab=98.69 E-value=9.3e-08 Score=98.70 Aligned_cols=121 Identities=22% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-cc-------------ccc------------ccC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-AL-------------SKA------------YLF 56 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~-------------~~~------------~~~ 56 (461)
+.+||+||||||+|+++|..|++.|++ |+|+|+.+... ..+. .+ ... ++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 468999999999999999999999998 99999986421 0000 00 000 000
Q ss_pred CCC-CCC--CC-------C--ce--eecCCC-CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEecC
Q 012545 57 PEG-TAR--LP-------G--FH--VCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ 116 (461)
Q Consensus 57 ~~~-~~~--~~-------~--~~--~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d 116 (461)
... ... +. . +. ..+... ....+.+.+.+.++++..++++++++.+... +.+ .+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 000 000 00 0 00 000000 0001223344568999999999998765543 333 456689999
Q ss_pred EEEEccCCCcc
Q 012545 117 ILVIATGSTVS 127 (461)
Q Consensus 117 ~liiAtG~~~~ 127 (461)
+||.|+|.+..
T Consensus 159 ~vVgADG~~S~ 169 (502)
T PRK06184 159 YLVGADGGRSF 169 (502)
T ss_pred EEEECCCCchH
Confidence 99999998873
No 144
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.68 E-value=8.3e-08 Score=95.79 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=36.1
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
||++.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 777889999999999999999999999987 999999864
No 145
>PRK06834 hypothetical protein; Provisional
Probab=98.68 E-value=1e-07 Score=97.67 Aligned_cols=123 Identities=25% Similarity=0.368 Sum_probs=76.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--CCC-cccc-------------cccCCCCCCCCCCce
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERP-ALSK-------------AYLFPEGTARLPGFH 67 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~-~~~~-------------~~~~~~~~~~~~~~~ 67 (461)
..+||+||||||+|+++|..|++.|++ |+|+|+.+...+ .|. .++. .+...........+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 368999999999999999999999988 999999864221 111 1100 000000000000000
Q ss_pred ee-c-----CCC--C---------CCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 68 VC-V-----GSG--G---------ERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 68 ~~-~-----~~~--~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.. . ... . ...+.+.+++.+++++.+++++++..+... +.+.+++++.+|+||.|.|.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 00 0 000 0 001223345679999999999999766543 455667789999999999998854
Q ss_pred c
Q 012545 129 T 129 (461)
Q Consensus 129 ~ 129 (461)
.
T Consensus 159 R 159 (488)
T PRK06834 159 R 159 (488)
T ss_pred H
Confidence 3
No 146
>PRK07045 putative monooxygenase; Reviewed
Probab=98.68 E-value=6.1e-08 Score=96.73 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-cc---cccccC------C---CCCCCCCCc
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-AL---SKAYLF------P---EGTARLPGF 66 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~-~~---~~~~~~------~---~~~~~~~~~ 66 (461)
|++..+||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .+ ....+. . ........+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM 77 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence 677889999999999999999999999997 9999998753210 00 00 000000 0 000000000
Q ss_pred e--------e--ecCC---CCC------CCCHhHH----H-HcCcEEEcCCeEEEEeCCC-C---EEEcCCCcEEecCEE
Q 012545 67 H--------V--CVGS---GGE------RLLPEWY----K-EKGIELILSTEIVRADIAS-K---TLLSATGLIFKYQIL 118 (461)
Q Consensus 67 ~--------~--~~~~---~~~------~~~~~~~----~-~~~v~~~~~~~v~~i~~~~-~---~v~~~~~~~~~~d~l 118 (461)
. . .... ... ..+.+.+ . ..+++++.+++++.+..+. . .+++.+|+++.+|.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v 157 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence 0 0 0000 000 0011111 1 2478999999999987543 2 366778888999999
Q ss_pred EEccCCCcc
Q 012545 119 VIATGSTVS 127 (461)
Q Consensus 119 iiAtG~~~~ 127 (461)
|.|.|....
T Consensus 158 IgADG~~S~ 166 (388)
T PRK07045 158 VGADGARSM 166 (388)
T ss_pred EECCCCChH
Confidence 999998774
No 147
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.67 E-value=2.9e-06 Score=79.00 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=108.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-------------------------------------cC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------------------------FT 231 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------------------------------~~ 231 (461)
..-.|+|||+|+.|+-+|..+++.|.+|.++++.+.+.... ..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 45689999999999999999999999999999976532100 01
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC-CEEEEEeC-----------CCcEEecCEEEEccCCCCCh-hhhhc-
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLK-----------DGRTLEADIVVVGVGGRPLI-SLFKG- 297 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~-~~~~~- 297 (461)
.++.+.+.+...+.|++++.++.+.++..++++ ++.+|.+. +..++.++.||.|+|..... .++..
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 234556667778899999999999998874332 56677654 23478999999999966543 33321
Q ss_pred -cccc-C-----CCcEEeCCCC-----CC--CCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHHHHHHhcc
Q 012545 298 -QVAE-N-----KGGIETDDFF-----KT--SADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 298 -~~~~-~-----~g~i~vd~~~-----~t--~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 359 (461)
.+.. . .+...++.-- .| -.|++|++|=.+..... . +|+ +....=..+|+.||+.++..
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~---~-~rmgp~fg~m~~sg~~~a~~~~~~ 252 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHG---L-PRMGPIFGGMLLSGKHVAEQILEK 252 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcC---C-CCcCchHHHHHHhhHHHHHHHHHH
Confidence 1111 0 1112222110 12 38999999988764321 1 111 22333345789999888754
No 148
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.67 E-value=1.1e-07 Score=97.67 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=35.3
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|+..++||||||||.|||.||.++++.|.+ |+|+||...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~ 40 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP 40 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence 556689999999999999999999999977 999999764
No 149
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.66 E-value=1.6e-07 Score=87.31 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=69.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCC-----------CCCCCC------ce
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-----------TARLPG------FH 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~ 67 (461)
.+||+||||||||++||..|++.|++ |+|+||+....... .....+++.. ...++. +.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence 68999999999999999999999987 99999997532110 0000001000 000110 00
Q ss_pred eecCCCCCCCCHhHHHHcCcEEEcCCeEEEEeCCCC--E---EEcC-----------CCcEEecCEEEEccCCCc
Q 012545 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGSTV 126 (461)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~liiAtG~~~ 126 (461)
..........+.+...+.|++++.++.+.++..++. . +.+. +...++++.+|.|||...
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 000000011222334567999999999988765433 2 2221 124689999999999654
No 150
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.65 E-value=8.2e-07 Score=88.32 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|+++..+ ++. ..|.++++ ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcch
Confidence 4566777888889999999999999999873 333 45777766 799999999999643
No 151
>PRK09126 hypothetical protein; Provisional
Probab=98.65 E-value=9.4e-08 Score=95.53 Aligned_cols=123 Identities=22% Similarity=0.318 Sum_probs=73.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-------ccc---c------ccc---CCCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-------ALS---K------AYL---FPEGTA 61 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-------~~~---~------~~~---~~~~~~ 61 (461)
|| .+||+||||||+|+++|..|++.|++ |+|+|+.+......+ .++ . +++ ......
T Consensus 1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~ 75 (392)
T PRK09126 1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS 75 (392)
T ss_pred CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence 55 68999999999999999999999997 999999864210000 000 0 000 000000
Q ss_pred CCCCce---------eecCC-----CCC------CCCH----hH-HHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEe
Q 012545 62 RLPGFH---------VCVGS-----GGE------RLLP----EW-YKEKGIELILSTEIVRADIASK--TLLSATGLIFK 114 (461)
Q Consensus 62 ~~~~~~---------~~~~~-----~~~------~~~~----~~-~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (461)
...... ..+.. ... ..+. +. .+..|++++.++++.+++.+.. .|.+.+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 000000 00000 000 0011 11 1235899999999999876544 35667888899
Q ss_pred cCEEEEccCCCccc
Q 012545 115 YQILVIATGSTVSI 128 (461)
Q Consensus 115 ~d~liiAtG~~~~~ 128 (461)
+|.+|.|.|....+
T Consensus 156 a~~vI~AdG~~S~v 169 (392)
T PRK09126 156 ARLLVAADSRFSAT 169 (392)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987744
No 152
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.65 E-value=8.5e-07 Score=90.35 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHh----cC--cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 232 ADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 232 ~~~~~~~~~~l~~----~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
..+.+.+.+.+++ .| ++++++++|+++... ++....|++++| ++.||.||+|+|...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 4567778888888 77 889999999999873 344567888888 799999999999654
No 153
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.64 E-value=1.7e-07 Score=93.66 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=74.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--------ccc---------ccccCCC-----
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--------ALS---------KAYLFPE----- 58 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--------~~~---------~~~~~~~----- 58 (461)
|-.+.+||+|||||++|+++|..|++.|++ |+|+|+.+...+... .++ -+++...
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS 77 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence 555679999999999999999999999987 999999853222100 000 0000000
Q ss_pred CC-CC-----CCCceeecCC-----CC------CC----CCHhHHHHc-CcEEEcCCeEEEEeCCCC--EEEcCCCcEEe
Q 012545 59 GT-AR-----LPGFHVCVGS-----GG------ER----LLPEWYKEK-GIELILSTEIVRADIASK--TLLSATGLIFK 114 (461)
Q Consensus 59 ~~-~~-----~~~~~~~~~~-----~~------~~----~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (461)
.. .. .......... .. .. .+.+.++.. +++++.++++..+..+.. .+.+.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (391)
T PRK08020 78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ 157 (391)
T ss_pred cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence 00 00 0000000000 00 00 011122334 899999999998875544 35566777899
Q ss_pred cCEEEEccCCCccc
Q 012545 115 YQILVIATGSTVSI 128 (461)
Q Consensus 115 ~d~liiAtG~~~~~ 128 (461)
+|.||.|.|....+
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987743
No 154
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.64 E-value=1.5e-06 Score=87.41 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-----cEEecCEEEEccCCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGRP 290 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-----~~i~aD~vi~a~G~~p 290 (461)
..+...+.+.+++.|++++.+++|++++.+ ++.+ .+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 456677788889999999999999999863 3332 3433332 3799999999999654
No 155
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.63 E-value=1.7e-07 Score=96.86 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
..+.+.+.+.+++.|+++++++.|++|.. +++++..|++.+|+++.+|.||++++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 57788899999999999999999999987 35666789999998999999999988543
No 156
>PRK06185 hypothetical protein; Provisional
Probab=98.63 E-value=1.3e-07 Score=95.07 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=34.7
Q ss_pred CC-CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm-~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
|| .+.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 44 4579999999999999999999999987 999999853
No 157
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.63 E-value=1.9e-06 Score=87.74 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCCCc------EEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec-CC--CCEEEEE
Q 012545 200 YIGLELSAALKINNID------VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVKEVK 270 (461)
Q Consensus 200 ~~g~e~a~~l~~~g~~------Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~--g~~~~v~ 270 (461)
.++.|+...+.+.=.+ ..-+.+... . -.+.+...+.+.|+++||+|+++++|+++..+ ++ +++.++.
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~y---n-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~ 267 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKY---N-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIH 267 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCC---C-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEE
Confidence 4788888888765111 111111111 1 24778899999999999999999999999874 22 5677777
Q ss_pred eC-CCc-----EEecCEEEEccCCCC
Q 012545 271 LK-DGR-----TLEADIVVVGVGGRP 290 (461)
Q Consensus 271 ~~-~G~-----~i~aD~vi~a~G~~p 290 (461)
.. +|. ..+.|.||+++|.-.
T Consensus 268 ~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 268 LTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred EEeCCceeEEEecCCCEEEEeCCcCc
Confidence 75 332 356899999999543
No 158
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.63 E-value=1.2e-07 Score=96.09 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=73.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... .+ . ...+ .....+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-~~----------~-~~~~-----------~~~~~~~l~~ 210 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTIL-PR----------E-EPSV-----------AALAKQYMEE 210 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccC-CC----------C-CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999998876 99999986421 00 0 0000 1234566788
Q ss_pred cCcEEEcCCeEEEEeCCCCEE-EcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTL-LSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v-~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++.++..+ ...+++++.+|.+++|+|.+|.
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 999999999999998765443 3345668999999999999995
No 159
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.62 E-value=8.5e-07 Score=90.46 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+..+...+.+.+++.|++++.++.|++++. ++. ..|++.+| ++.||.||+|+|..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQP-AVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCc-eEEEeCCc-EEECCEEEEccccc
Confidence 556778888899999999999999999975 222 45777777 79999999999943
No 160
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.62 E-value=1.9e-07 Score=93.65 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CCCCcEEEEeCCCCCCCC---CC-ccc-------c--ccc--------------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVAPYE---RP-ALS-------K--AYL-------------- 55 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g--~~~~~V~vie~~~~~~~~---~~-~~~-------~--~~~-------------- 55 (461)
++||+||||||+|+++|..|++.| ++ |+|+|+.+..... +. .++ + +++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 77 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMV 77 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence 379999999999999999999986 65 9999998642111 10 000 0 000
Q ss_pred -CCCCC-C--CCCCceee--c--CCC---------CCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecC
Q 012545 56 -FPEGT-A--RLPGFHVC--V--GSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (461)
Q Consensus 56 -~~~~~-~--~~~~~~~~--~--~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (461)
..... . ........ . +.. ....+.+.+.+.|++++.+++++.++.+... +.+.+++++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 00000 0 00000000 0 000 0011223344579999999999998766554 556678889999
Q ss_pred EEEEccCCCcccc
Q 012545 117 ILVIATGSTVSIT 129 (461)
Q Consensus 117 ~liiAtG~~~~~~ 129 (461)
.||.|+|....+.
T Consensus 158 ~vI~AdG~~S~vr 170 (403)
T PRK07333 158 LLVAADGARSKLR 170 (403)
T ss_pred EEEEcCCCChHHH
Confidence 9999999887443
No 161
>PRK08244 hypothetical protein; Provisional
Probab=98.60 E-value=1.9e-07 Score=96.22 Aligned_cols=120 Identities=20% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-cc-------------cccccC----------CCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-AL-------------SKAYLF----------PEG 59 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~-------------~~~~~~----------~~~ 59 (461)
.+||+||||||+|+++|..|++.|++ |+|||+.+... ..+. .+ ...+.. ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 48999999999999999999999997 99999986421 1110 00 000000 000
Q ss_pred C--CCCCCc------eeecCC-CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCEE--EcC--CC-cEEecCEEEEccCCC
Q 012545 60 T--ARLPGF------HVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSA--TG-LIFKYQILVIATGST 125 (461)
Q Consensus 60 ~--~~~~~~------~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~--~~-~~~~~d~liiAtG~~ 125 (461)
. ..+... ...+.. .....+.+.+++.+++++.+++++++..+...+ .+. ++ +++++|++|.|.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 0 000000 000000 000112233455799999999999987655443 332 45 479999999999988
Q ss_pred cc
Q 012545 126 VS 127 (461)
Q Consensus 126 ~~ 127 (461)
..
T Consensus 159 S~ 160 (493)
T PRK08244 159 SI 160 (493)
T ss_pred hH
Confidence 74
No 162
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.59 E-value=1.6e-07 Score=96.14 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
-..+.+.+.+.++++|++|+++++|++|.. ++|+...+++.+|+.+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 457888999999999999999999999998 455566788888878999999998776
No 163
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.58 E-value=2.1e-06 Score=85.27 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+.+.|++++.+++|+++..+ ++ ...|++++| ++.+|.||+|+|...
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence 4566667777788899999999999999873 33 346788887 799999999999753
No 164
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.58 E-value=8.5e-07 Score=88.64 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHHHHHCCCcEEEEccCCccCCc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 204 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 204 e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
++...+.+.|.+++.... .+..+. ....++.+.+.+.+++.|++++++++|+++..+ ++ ...+++ +++++.+|.|
T Consensus 77 d~~~~~~~~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 77 DLIDFFESLGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHHcCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEE
Confidence 445566677777766543 233322 135788889999999999999999999999763 23 345666 4568999999
Q ss_pred EEccCCCC
Q 012545 283 VVGVGGRP 290 (461)
Q Consensus 283 i~a~G~~p 290 (461)
|+|+|...
T Consensus 153 IlAtG~~s 160 (400)
T TIGR00275 153 ILATGGLS 160 (400)
T ss_pred EECCCCcc
Confidence 99999643
No 165
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.58 E-value=1.6e-06 Score=89.45 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCC--cEEecCEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG--RTLEADIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G--~~i~aD~vi~a~G-~~p~~~~~ 295 (461)
...+.+.+.+.+++.|++++++++++++.. +++++..+.. .++ .++.++.||+|+| +..|.+.+
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 456778888888999999999999999986 4566666655 343 3689999999998 66665544
No 166
>PRK07236 hypothetical protein; Provisional
Probab=98.58 E-value=4.6e-07 Score=90.33 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-c--ccc---cccCCCCCC-----CCC--Cceee-
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---AYLFPEGTA-----RLP--GFHVC- 69 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---~~~~~~~~~-----~~~--~~~~~- 69 (461)
+.+||+|||||++|+++|..|++.|++ |+|+|+.+...-.+. . +.. ..+...... ..+ .....
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 81 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLD 81 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEe
Confidence 468999999999999999999999987 999999864211111 0 000 000000000 000 00000
Q ss_pred -cCC-----CC---C---CCCHhHHH-H-cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCc
Q 012545 70 -VGS-----GG---E---RLLPEWYK-E-KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 70 -~~~-----~~---~---~~~~~~~~-~-~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+. .. . ..+...+. . .+++++.+++++++..+... +.+.+|+++.+|.||.|-|...
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 82 RDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 000 00 0 00111111 1 24678999999999765544 5677888999999999999876
No 167
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.58 E-value=1.6e-07 Score=94.03 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=72.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--ccc-------c--cccCC--CCCCCCCCce
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALS-------K--AYLFP--EGTARLPGFH 67 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~~-------~--~~~~~--~~~~~~~~~~ 67 (461)
|+ +.+||+|||||++|+++|..|++.|++ |+|+|+.+...-... .+. + ++... ........+.
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 76 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLT 76 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence 44 578999999999999999999999987 999999864211000 000 0 00000 0000000000
Q ss_pred ee--------------------cCCCC--------CCCCHhHHHHc-CcEEEcCCeEEEEeCCCCE--EEcCCCcEEecC
Q 012545 68 VC--------------------VGSGG--------ERLLPEWYKEK-GIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (461)
Q Consensus 68 ~~--------------------~~~~~--------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (461)
.. .+... ...+.+.+.+. +++++.++.+.+++.++.. +.+.+++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 156 (396)
T PRK08163 77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGD 156 (396)
T ss_pred EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecC
Confidence 00 00000 00011122233 4899999999998765543 556677789999
Q ss_pred EEEEccCCCc
Q 012545 117 ILVIATGSTV 126 (461)
Q Consensus 117 ~liiAtG~~~ 126 (461)
.+|.|.|...
T Consensus 157 ~vV~AdG~~S 166 (396)
T PRK08163 157 ALIGCDGVKS 166 (396)
T ss_pred EEEECCCcCh
Confidence 9999999876
No 168
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.57 E-value=2.1e-07 Score=93.41 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=72.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC-CC-----CCCCC-ccc-------c--cccCCC---CCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VA-----PYERP-ALS-------K--AYLFPE---GTA 61 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~-~~-----~~~~~-~~~-------~--~~~~~~---~~~ 61 (461)
|| ..+||+|||||++|+++|..|++.|++ |+|+|+.. .. +..|. .++ + +++..- ...
T Consensus 1 ~m-~~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 1 MM-QSVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA 76 (405)
T ss_pred CC-CcCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence 55 479999999999999999999999987 99999962 11 00110 010 0 000000 000
Q ss_pred CCCCceeecC---------CC-C-C-------------CCCHhHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEe
Q 012545 62 RLPGFHVCVG---------SG-G-E-------------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFK 114 (461)
Q Consensus 62 ~~~~~~~~~~---------~~-~-~-------------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (461)
.+..+..+.. .. . . ..+.+.+.+ .+++++.++++++++.++. .+.+.+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 0000000000 00 0 0 001111122 3799999999999865543 46677888899
Q ss_pred cCEEEEccCCCcc
Q 012545 115 YQILVIATGSTVS 127 (461)
Q Consensus 115 ~d~liiAtG~~~~ 127 (461)
+|.||.|.|....
T Consensus 157 a~lvIgADG~~S~ 169 (405)
T PRK08850 157 AKLVVGADGANSW 169 (405)
T ss_pred eCEEEEeCCCCCh
Confidence 9999999998764
No 169
>PRK08013 oxidoreductase; Provisional
Probab=98.57 E-value=2.2e-07 Score=93.11 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-cccc---------cccCCCC---CCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPEG---TARLP 64 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~~---~~~~~ 64 (461)
.+||+||||||+|+++|..|++.|++ |+|+|+.+..... |. .+.. +++..-. ...+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 68999999999999999999999987 9999998642110 00 0000 0000000 00000
Q ss_pred Ccee---------ec-----CCCCC------CC----CHhHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCE
Q 012545 65 GFHV---------CV-----GSGGE------RL----LPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI 117 (461)
Q Consensus 65 ~~~~---------~~-----~~~~~------~~----~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~ 117 (461)
.+.. .+ +.... .. +.+.+.+ .+++++.++++..++.+.. .+.+.+|+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL 159 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence 0000 00 00000 00 1111223 3799999999999865543 35667888899999
Q ss_pred EEEccCCCccc
Q 012545 118 LVIATGSTVSI 128 (461)
Q Consensus 118 liiAtG~~~~~ 128 (461)
||-|.|....+
T Consensus 160 vVgADG~~S~v 170 (400)
T PRK08013 160 VVGADGANSWL 170 (400)
T ss_pred EEEeCCCCcHH
Confidence 99999987743
No 170
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.56 E-value=2.5e-06 Score=84.37 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+.+. |++++.+++|++++. + .|.+++| ++.||.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 445667777777665 999999999999964 2 5777777 578999999999754
No 171
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.55 E-value=9.7e-07 Score=79.54 Aligned_cols=100 Identities=28% Similarity=0.385 Sum_probs=68.6
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCC--------------cc----------------------------c
Q 012545 194 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCMP--------------RL----------------------------F 230 (461)
Q Consensus 194 ~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~--------------~~----------------------------~ 230 (461)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. .. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998744211 00 0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC--CCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~--~p~~~~~ 295 (461)
.+++.+++.+..++.+++++++++|+++..++++ ..|++++++++.||.||+|+|. .|+..-+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence 1244577888889999999999999999985445 7899999989999999999996 5554433
No 172
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.55 E-value=7.5e-07 Score=91.02 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +... .. ......+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~~~---------~~-----------~~~~~~~~l~~ 223 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL---PGED---------AE-----------VSKVVAKALKK 223 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC---CCCC---------HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999986421 0000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.++..+ .+.++ +++.+|.+++|+|..|+.
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 899999999999987655543 33455 479999999999999843
No 173
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.54 E-value=2.7e-07 Score=92.66 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=72.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--------CCC-CC-cc---cccc------cCC---CCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--------PYE-RP-AL---SKAY------LFP---EGTAR 62 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--------~~~-~~-~~---~~~~------~~~---~~~~~ 62 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.. .+. +. .+ +..+ +.. .....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 58999999999999999999999987 9999998621 000 00 00 0000 000 00000
Q ss_pred CCCcee---------ecCC-----CC----------CCCCHhHHHHcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecC
Q 012545 63 LPGFHV---------CVGS-----GG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQ 116 (461)
Q Consensus 63 ~~~~~~---------~~~~-----~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d 116 (461)
...+.. .+.. .. ...+.+.+++.+++++.++++.+++.+.. .+.+.+|+++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 000000 0000 00 00111223456899999999999875554 3566788889999
Q ss_pred EEEEccCCCccc
Q 012545 117 ILVIATGSTVSI 128 (461)
Q Consensus 117 ~liiAtG~~~~~ 128 (461)
.||.|.|....+
T Consensus 159 ~vVgAdG~~S~v 170 (405)
T PRK05714 159 LVVAADGANSAV 170 (405)
T ss_pred EEEEecCCCchh
Confidence 999999987743
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.54 E-value=2.4e-06 Score=88.48 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=81.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC--Ccc-----------CCcccCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
...++|||+|+.|+.+|..+++.|.+|+++... ..+ .+.....++.+.+.+.+++.|++++.+++|.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999999653 111 0111356788889999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
++...+ ....+.+.+|+++.+|.||+|+|.+|..
T Consensus 291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998732 3356778888899999999999987754
No 175
>PLN02612 phytoene desaturase
Probab=98.54 E-value=1.6e-06 Score=90.36 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
+..+.+.+.+.+++.|++++++++|++|+.++++.+..+++.+|+++.+|.||+|+.
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 356778888889899999999999999997666767778888999999999999986
No 176
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.53 E-value=4.8e-07 Score=92.88 Aligned_cols=119 Identities=20% Similarity=0.342 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC-CCCCCCc--c---cccccCCCCCCCCC----------C-
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-APYERPA--L---SKAYLFPEGTARLP----------G- 65 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~~~~--~---~~~~~~~~~~~~~~----------~- 65 (461)
+..|||||||||+||+.||..+++.|.+ |+|+|++.. .....|. . .++.+..+ ...+. .
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrE-idalGg~~g~~~d~~gi 77 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVRE-IDALGGEMGKAIDKTGI 77 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHH-HHhcCCHHHHHHhhccC
Confidence 4579999999999999999999999998 999999842 1111111 1 01110000 00000 0
Q ss_pred -ceeec---CC-------C-CC----CCCHhHHHH-cCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCC
Q 012545 66 -FHVCV---GS-------G-GE----RLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST 125 (461)
Q Consensus 66 -~~~~~---~~-------~-~~----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~ 125 (461)
+.... +. . .. ..+.+.+.+ .+++++.. .|..+..++.. |.+.+|..+.++.+|+|||..
T Consensus 78 q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 78 QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00000 00 0 00 011122233 37888765 78877655543 567788889999999999964
Q ss_pred c
Q 012545 126 V 126 (461)
Q Consensus 126 ~ 126 (461)
.
T Consensus 157 L 157 (618)
T PRK05192 157 L 157 (618)
T ss_pred h
Confidence 3
No 177
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.53 E-value=5.8e-07 Score=89.58 Aligned_cols=121 Identities=17% Similarity=0.319 Sum_probs=72.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-cccc---------cccCCC---CCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPE---GTARLP 64 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~---~~~~~~ 64 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+.+...+. ++ .++. +++..- ....+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 58999999999999999999999987 9999987522111 10 1100 000000 000000
Q ss_pred Cce--------eecCCCC---C-------C-CCH----hHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEE
Q 012545 65 GFH--------VCVGSGG---E-------R-LLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (461)
Q Consensus 65 ~~~--------~~~~~~~---~-------~-~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (461)
.+. ..+.... . . .+. +.+.. .+++++.++++.+++.+.. .+++.+|.++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 000 0000000 0 0 001 11112 4799999999999876544 567788889999999
Q ss_pred EEccCCCccc
Q 012545 119 VIATGSTVSI 128 (461)
Q Consensus 119 iiAtG~~~~~ 128 (461)
|.|.|..+.+
T Consensus 160 IgADG~~S~v 169 (384)
T PRK08849 160 IGADGANSQV 169 (384)
T ss_pred EEecCCCchh
Confidence 9999988744
No 178
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.53 E-value=3.7e-07 Score=91.10 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=68.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-cccc-cc----cCCCCCCCCCCce-ee-------cCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSK-AY----LFPEGTARLPGFH-VC-------VGS 72 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~-~~-------~~~ 72 (461)
||+|||||+||+++|..|++.|++ |+|+|+++..+..+. +... .+ +.......+.... .. ...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 799999999999999999998887 999999865332211 0000 00 0000000111100 00 000
Q ss_pred C--------CCCCCHhHHHHcCcEEEcCCeEEEEeCC-CC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 73 G--------GERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 73 ~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
. ....+.+.+.+.+++++.+ .+..+... .. .+.+.++++++++.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 0011223334568888654 78877655 22 35666777899999999999876
No 179
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.52 E-value=3.6e-07 Score=92.07 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=33.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||||+||+++|..|++.|++ |+|+|+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 468999999999999999999999987 999999865
No 180
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.52 E-value=1.4e-06 Score=88.77 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-----EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-----~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++|++|...+++.+.++++.+|+ ++.+|.||+|+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 355778888888899999999999999986556767778887765 7999999999874
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.52 E-value=2.6e-06 Score=88.07 Aligned_cols=102 Identities=24% Similarity=0.242 Sum_probs=81.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC--CccC-----------CcccCHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
...+|+|||+|+.|+.+|..+++.|.+|++++.. ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999998632 1111 11135677888889999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++..+ +....+.+++|+++.+|.+|+|+|.+|..
T Consensus 291 ~~I~~~--~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETE--DGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEec--CCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 999863 22356778888899999999999988754
No 182
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.52 E-value=3.5e-07 Score=91.13 Aligned_cols=120 Identities=20% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC--CCCCC-cc---cccccCCCCC-CCCC--------Cce--
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--PYERP-AL---SKAYLFPEGT-ARLP--------GFH-- 67 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~--~~~~~-~~---~~~~~~~~~~-~~~~--------~~~-- 67 (461)
.+||+||||||+|+++|..|++.|++ |+|+|+.+.. ...+. .+ +-..+..-.. .++. ...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~---V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLD---VTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 57999999999999999999999988 9999998211 00000 00 0000000000 0000 000
Q ss_pred ------eecCC---C------------CCCCCHhHHHHc-CcEEEcCCeEEEEeCCCC--EEEcC-CCcEEecCEEEEcc
Q 012545 68 ------VCVGS---G------------GERLLPEWYKEK-GIELILSTEIVRADIASK--TLLSA-TGLIFKYQILVIAT 122 (461)
Q Consensus 68 ------~~~~~---~------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~-~~~~~~~d~liiAt 122 (461)
..+.. . ....+.+...+. +++++.+++|+.++.+.. ++++. +|+++++|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 00000 0 001122333334 499999999999987664 36666 88899999999999
Q ss_pred CCCcc
Q 012545 123 GSTVS 127 (461)
Q Consensus 123 G~~~~ 127 (461)
|....
T Consensus 159 G~~S~ 163 (387)
T COG0654 159 GANSA 163 (387)
T ss_pred CCchH
Confidence 97763
No 183
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.51 E-value=3.9e-06 Score=83.67 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+....+.+.+.+++.| ..+..++.+..+..+ . ....|.+.+|+ +.+|.||+|+|...
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 4577788888999999 455668888888763 2 56788999986 99999999999553
No 184
>PRK06126 hypothetical protein; Provisional
Probab=98.50 E-value=6.4e-07 Score=93.50 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+..+||+|||||++|+++|..|+++|++ |+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 3468999999999999999999999998 999999864
No 185
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.49 E-value=2.5e-06 Score=86.16 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEE-eCCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~-~~~G~--~i~aD~vi~a~G~~ 289 (461)
...+.+.+.+.+++ .||+++.++.++++.. +++++.++. ..++. .+.|+.||+|+|--
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 45667777777764 5999999999999876 356666654 33454 58999999999953
No 186
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.49 E-value=1.5e-06 Score=92.61 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++ |++++.+++|+++... ++. ..|.+.+|..+.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence 45777888888888 9999999999999863 333 347888887789999999999754
No 187
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.49 E-value=1.5e-06 Score=80.78 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEe-cCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
.....+.++..+++.|+.++.+..++.+.. ++++..+.|.+.+|..+.++.+|+++|-.-
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 556778889999999999999999998873 345677899999999999999999999543
No 188
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.48 E-value=7.6e-07 Score=88.86 Aligned_cols=121 Identities=24% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-------ccc---ccccCCCCC------CC---CC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-------ALS---KAYLFPEGT------AR---LP 64 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-------~~~---~~~~~~~~~------~~---~~ 64 (461)
+.+||+|||||+||+++|..|++.|++ |+|+|+.+....... .++ ...+..... .. ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~ 80 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVY 80 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcce
Confidence 368999999999999999999999987 999999865321000 000 000000000 00 00
Q ss_pred Cceee--------c-----CCC----------CCCCCHhHHHHcC-cEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEE
Q 012545 65 GFHVC--------V-----GSG----------GERLLPEWYKEKG-IELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (461)
Q Consensus 65 ~~~~~--------~-----~~~----------~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (461)
.+... . ... ....+.+.+++.+ ++++ ++.+.++..++. .+.+.++.++.+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 81 DMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLV 159 (388)
T ss_pred EEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEE
Confidence 00000 0 000 0001222344555 8888 778888865444 356667778999999
Q ss_pred EEccCCCccc
Q 012545 119 VIATGSTVSI 128 (461)
Q Consensus 119 iiAtG~~~~~ 128 (461)
|.|.|....+
T Consensus 160 I~adG~~S~v 169 (388)
T PRK07608 160 VGADGAHSWV 169 (388)
T ss_pred EEeCCCCchH
Confidence 9999987643
No 189
>PRK07121 hypothetical protein; Validated
Probab=98.48 E-value=3e-06 Score=87.22 Aligned_cols=65 Identities=25% Similarity=0.268 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-Cc--EEec-CEEEEccCC-CCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVGG-RPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G~--~i~a-D~vi~a~G~-~p~~~~~ 295 (461)
...+.+.+.+.+++.|++++++++++++..++++++.+|...+ ++ .+.+ +.||+|+|- ..|.+++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 4567788888899999999999999999875557787776643 32 5788 999999994 4444444
No 190
>PLN02697 lycopene epsilon cyclase
Probab=98.48 E-value=6.4e-07 Score=91.75 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-ccccccCCCC-----CCCCCCceeec--------
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVCV-------- 70 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~-------- 70 (461)
.+||+||||||||+++|..|++.|++ |+|+|+... +..+. .....+.... ...++......
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 58999999999999999999999987 999998632 21110 0000000000 00011000000
Q ss_pred CCCC--C------CCCHhHHHHcCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCCCc
Q 012545 71 GSGG--E------RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 71 ~~~~--~------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~~~ 126 (461)
+... . ..+.+.+.+.|+++ .++.|+.+..+... +.+.++.++.++.||.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0000 0 11122234568998 45588888754332 3456777899999999999766
No 191
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.48 E-value=4.1e-06 Score=84.96 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=91.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc---------------------------------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------------------------------------- 229 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~--------------------------------------- 229 (461)
..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999999865321100
Q ss_pred --------------------cCHHHHHHHHHHHHhcCcE--EEcCCcEEEEEecCCCCEEEEEeCCC--c--EEecCEEE
Q 012545 230 --------------------FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDG--R--TLEADIVV 283 (461)
Q Consensus 230 --------------------~~~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~G--~--~i~aD~vi 283 (461)
-..++.+++++..+..|+. ++++++|++++.. +....|++.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV--DGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec--CCeEEEEEEcCCCceEEEEcCEEE
Confidence 0135677788888889988 8899999999873 23345665432 2 46799999
Q ss_pred EccC--CCCChhhhhccccc-CCCcEEeCCCCCC----CCCCEEEeCcccc
Q 012545 284 VGVG--GRPLISLFKGQVAE-NKGGIETDDFFKT----SADDVYAVGDVAT 327 (461)
Q Consensus 284 ~a~G--~~p~~~~~~~~~~~-~~g~i~vd~~~~t----~~~~vya~GD~~~ 327 (461)
+|+| ..|+.+-++ ++.. .+..+... .+++ ..+.|-++|--.+
T Consensus 167 vAtG~~~~P~~P~ip-G~~~f~G~~iHs~-~yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 167 VCNGHYTEPNVAHIP-GIKSWPGKQIHSH-NYRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred EeccCCCCCcCCCCC-CcccCCceEEEec-ccCCccccCCCEEEEECCCcC
Confidence 9999 566654332 2221 22223332 2332 4567888885443
No 192
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.47 E-value=1.5e-06 Score=74.78 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.6
Q ss_pred EEEcCChHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 012545 9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV 42 (461)
Q Consensus 9 vIIG~G~aGl~aA~~L~~~g--~~~~~V~vie~~~~ 42 (461)
+|||+|++|++++.+|.++. .+..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 45668999999765
No 193
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.47 E-value=8e-07 Score=89.91 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=32.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+||+||||||||++||..|++.|++ |+|+|+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 469999999999999999999999997 99999985
No 194
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.47 E-value=8.3e-07 Score=92.40 Aligned_cols=122 Identities=13% Similarity=0.141 Sum_probs=71.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-ccc-------------ccc-----------cCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALS-------------KAY-----------LFP 57 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~-------------~~~-----------~~~ 57 (461)
..+||+||||||+|+++|..|++.|++ |+|+|+.+... +.+. .+. ..+ +..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 85 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLD 85 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEc
Confidence 368999999999999999999999987 99999986421 1110 000 000 000
Q ss_pred CCCCCCCCcee----ecCCCC---CC--CCH----hHHHH-cCcEEEcCCeEEEEeCCCCEE--EcC--CC--cEEecCE
Q 012545 58 EGTARLPGFHV----CVGSGG---ER--LLP----EWYKE-KGIELILSTEIVRADIASKTL--LSA--TG--LIFKYQI 117 (461)
Q Consensus 58 ~~~~~~~~~~~----~~~~~~---~~--~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~v--~~~--~~--~~~~~d~ 117 (461)
.....+..+.. ..+... .. .+. +.+.+ .+++++.++++++++.+...+ .+. +| +++++|+
T Consensus 86 ~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~ 165 (538)
T PRK06183 86 AKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARY 165 (538)
T ss_pred CCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEE
Confidence 00000000000 000000 00 011 22223 389999999999998665543 333 45 4789999
Q ss_pred EEEccCCCccc
Q 012545 118 LVIATGSTVSI 128 (461)
Q Consensus 118 liiAtG~~~~~ 128 (461)
||.|.|.+..+
T Consensus 166 vVgADG~~S~v 176 (538)
T PRK06183 166 VVGCDGANSFV 176 (538)
T ss_pred EEecCCCchhH
Confidence 99999987743
No 195
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.46 E-value=5.7e-07 Score=78.73 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..||+|+||||+||+||++|++.|++ |+++|++-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCce---EEEEEeecc
Confidence 36999999999999999999999998 999999855
No 196
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.46 E-value=7.4e-07 Score=93.01 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+||||||+|+++|..|++.|++ |+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 468999999999999999999999987 999999864
No 197
>PRK11445 putative oxidoreductase; Provisional
Probab=98.46 E-value=9.5e-07 Score=86.85 Aligned_cols=117 Identities=18% Similarity=0.266 Sum_probs=67.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCc---ccc---------cccCCCCC-C-----CCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPA---LSK---------AYLFPEGT-A-----RLP 64 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~---~~~---------~~~~~~~~-~-----~~~ 64 (461)
+||+||||||||+++|..|++. ++ |+|+|+.+.. ++..++ ++. ++..+... . ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence 6999999999999999999997 76 9999998642 222211 100 00000000 0 000
Q ss_pred Cceee------cCCCC----CCCCHhHH---HHcCcEEEcCCeEEEEeCCCCE--EEc-CCCc--EEecCEEEEccCCCc
Q 012545 65 GFHVC------VGSGG----ERLLPEWY---KEKGIELILSTEIVRADIASKT--LLS-ATGL--IFKYQILVIATGSTV 126 (461)
Q Consensus 65 ~~~~~------~~~~~----~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~-~~~~--~~~~d~liiAtG~~~ 126 (461)
..... .+... ...+.+++ .+.+++++.++.+..+...... +.+ .+++ ++++|.+|.|+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00000 00000 00111222 2468999999999888755443 343 4553 689999999999876
No 198
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=2.9e-06 Score=88.94 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCC---CCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~---g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
...+.+.+.+.+++.||+++.++.++++..+++ +++.++.. .+|+ .+.++.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 456777888888899999999999999986432 77777754 4554 578999999999644
No 199
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.45 E-value=5.6e-07 Score=90.00 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
.+++++.+++++++...+. .+.+.++.++.+|.+|.|.|...
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4799999999999875544 35666777899999999999876
No 200
>PRK07588 hypothetical protein; Provisional
Probab=98.45 E-value=7.3e-07 Score=89.08 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=70.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cc-cc--------cccCC--CCCCCCCCceee---
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL-SK--------AYLFP--EGTARLPGFHVC--- 69 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~-~~--------~~~~~--~~~~~~~~~~~~--- 69 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-... .+ .. +++.. .....+..+...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 4899999999999999999999987 999999864210000 00 00 00000 000000000000
Q ss_pred ---------------cCCCCCC----CCHhHH---HHcCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCC
Q 012545 70 ---------------VGSGGER----LLPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGST 125 (461)
Q Consensus 70 ---------------~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~ 125 (461)
.+..... .+...+ ...+++++.+++|.+++.+... +.+.+|+++.+|.||.|.|.+
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0000000 011111 1346899999999999876654 566788889999999999987
Q ss_pred cc
Q 012545 126 VS 127 (461)
Q Consensus 126 ~~ 127 (461)
..
T Consensus 158 S~ 159 (391)
T PRK07588 158 SH 159 (391)
T ss_pred cc
Confidence 74
No 201
>PRK06753 hypothetical protein; Provisional
Probab=98.44 E-value=1.6e-06 Score=85.98 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=69.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cc---------ccccCC--CCCCCCCCceeec--
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KAYLFP--EGTARLPGFHVCV-- 70 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~~~~--~~~~~~~~~~~~~-- 70 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+........ +. -+++.. ........+....
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK 77 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC
Confidence 3899999999999999999999987 9999998752111000 00 000000 0000000000000
Q ss_pred C-------CC----CC----CCCHhHHHH--cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCc
Q 012545 71 G-------SG----GE----RLLPEWYKE--KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 71 ~-------~~----~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~ 126 (461)
+ .. .. ..+...+.+ .+.+++.++++++++.++.. +++.+++++.+|.||-|.|.+.
T Consensus 78 g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 78 GTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 0 00 00 011222222 24578889999999765543 5667888899999999999776
No 202
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.44 E-value=1.6e-06 Score=86.70 Aligned_cols=99 Identities=14% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccCCccCC--cccCHHHH---------HHHHHHHHhcCcEEEcCCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP--RLFTADIA---------AFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~--~~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~ 256 (461)
.++++|||+|+.|+.+|..|++.+. +|+++++.+...- ..+...+. -.-.+.+++.||+++.++.|+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5689999999999999999999875 7999987754311 01222111 011345677899999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
.+.. +. ..+.+++|+++.+|.+|+|||.+|..
T Consensus 83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9976 33 25777889899999999999998854
No 203
>PRK07233 hypothetical protein; Provisional
Probab=98.44 E-value=1.1e-06 Score=89.01 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++|++|+.+ ++.+..+ ..+++++.+|.||+|++.
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCH
Confidence 4567888888999999999999999999873 3444333 356778999999999984
No 204
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.43 E-value=9.6e-06 Score=82.94 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
...+.+.+.+.+++.| ++++++++|++++.++++.+ .+.+ .+|+ ++.|+.||+|.|...
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 3466778888888887 89999999999987445533 3333 3453 699999999999764
No 205
>PRK05868 hypothetical protein; Validated
Probab=98.43 E-value=1.3e-06 Score=86.64 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=70.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--c---------ccccCC--CCCCCCCCcee----
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S---------KAYLFP--EGTARLPGFHV---- 68 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~--~---------~~~~~~--~~~~~~~~~~~---- 68 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-....+ . -+++.. ...........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 4899999999999999999999987 99999986521100000 0 000000 00000000000
Q ss_pred ------e-----cCCCC----C----CCCHhHHH---HcCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCC
Q 012545 69 ------C-----VGSGG----E----RLLPEWYK---EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 69 ------~-----~~~~~----~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~ 124 (461)
. .+... . ..+.+.+. ..+++++++++++.++.+.. ++.+.+++++.+|.||-|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 0 00000 0 01112222 35789999999999875544 356778888999999999998
Q ss_pred Ccc
Q 012545 125 TVS 127 (461)
Q Consensus 125 ~~~ 127 (461)
+..
T Consensus 159 ~S~ 161 (372)
T PRK05868 159 HSN 161 (372)
T ss_pred Cch
Confidence 774
No 206
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.43 E-value=5.1e-06 Score=84.33 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CCc--EEecCEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G~--~i~aD~vi~a~G-~~p~~~~~ 295 (461)
...+.+.+.+.+++.|++++++++++++..++++++.++... +++ .+.++.||+|+| +..|.+++
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence 467788888999999999999999999987556777666553 443 478999999999 55555544
No 207
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.41 E-value=1.8e-06 Score=85.74 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=32.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
++++|||||++||+||++|++.+ ++.+|+|+|+++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCCC
Confidence 37999999999999999999998 35669999998663
No 208
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.40 E-value=5.9e-06 Score=87.00 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~ 288 (461)
...+...+.+.+++.||+++.++.++++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 56777788888888999999999999987645778877764 3564 5789999999984
No 209
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.40 E-value=7.4e-07 Score=67.27 Aligned_cols=78 Identities=19% Similarity=0.417 Sum_probs=57.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHcC
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (461)
+++|||||+.|+.+|..|++.|.+ |+|+++.+... +... .. ......+.+++.|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~---~~~~---------~~-----------~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL---PGFD---------PD-----------AAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS---TTSS---------HH-----------HHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh---hhcC---------HH-----------HHHHHHHHHHHCC
Confidence 589999999999999999998876 99999997522 0000 00 0124567788899
Q ss_pred cEEEcCCeEEEEeCCCCE--EEcCCC
Q 012545 87 IELILSTEIVRADIASKT--LLSATG 110 (461)
Q Consensus 87 v~~~~~~~v~~i~~~~~~--v~~~~~ 110 (461)
|++++++.+.+++.++.. |.+.||
T Consensus 55 V~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 55 VEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 999999999999876543 555443
No 210
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=5.6e-06 Score=86.95 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 55677788888888999999999999998744577888764 3564 67899999999953
No 211
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.39 E-value=1e-06 Score=87.87 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
|||+||||||||++||..|++.|++ |+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 7999999999999999999999987 9999998
No 212
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.39 E-value=4.6e-06 Score=85.99 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-----cEEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-----~~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.++++|++++++++|++|..+ ++++..+.+.++ +++.+|.||+++..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 5668889999999999999999999999873 455556666554 57899999999874
No 213
>PRK06847 hypothetical protein; Provisional
Probab=98.39 E-value=5.7e-06 Score=82.15 Aligned_cols=102 Identities=26% Similarity=0.342 Sum_probs=80.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC------------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------ 227 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------ 227 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987653100
Q ss_pred ---c----------------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 228 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 228 ---~----------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
. ....++.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCC
Confidence 0 001244566777778889999999999999873332 5678889999999999999998
Q ss_pred CCChh
Q 012545 289 RPLIS 293 (461)
Q Consensus 289 ~p~~~ 293 (461)
.+...
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 77653
No 214
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.39 E-value=1.2e-06 Score=87.34 Aligned_cols=117 Identities=26% Similarity=0.310 Sum_probs=70.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CC-ccc---------ccccCCC---CCCCCCCce
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RP-ALS---------KAYLFPE---GTARLPGFH 67 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~~-~~~---------~~~~~~~---~~~~~~~~~ 67 (461)
||+|||||+||+++|..|++.|++ |+|+|+.+..... +. .++ -+++... .......+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 799999999999999999999987 9999999742111 10 000 0000000 000000000
Q ss_pred eecC---------C-----CC----------CCCCHhHHHHcC-cEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEE
Q 012545 68 VCVG---------S-----GG----------ERLLPEWYKEKG-IELILSTEIVRADIASKT--LLSATGLIFKYQILVI 120 (461)
Q Consensus 68 ~~~~---------~-----~~----------~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lii 120 (461)
.... . .. ...+.+.+.+.+ ++++.+++|+.++..... +.+.+++++.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 0000 0 00 001122233455 999999999999766554 4567888899999999
Q ss_pred ccCCCc
Q 012545 121 ATGSTV 126 (461)
Q Consensus 121 AtG~~~ 126 (461)
|.|...
T Consensus 158 adG~~S 163 (385)
T TIGR01988 158 ADGANS 163 (385)
T ss_pred eCCCCC
Confidence 999876
No 215
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.39 E-value=1e-06 Score=87.75 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=69.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCCCCCC-----CC-cccc---------cccCCC--CCCCCCCcee
Q 012545 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAPYE-----RP-ALSK---------AYLFPE--GTARLPGFHV 68 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~~~~~-----~~-~~~~---------~~~~~~--~~~~~~~~~~ 68 (461)
||+||||||+|+++|..|++.| ++ |+|+|+.+..... +. .+.. +++..- .......+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 87 9999998643211 00 0000 000000 0000000000
Q ss_pred e---------cC-----CCC------CCCCH----hHHHH-cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEc
Q 012545 69 C---------VG-----SGG------ERLLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA 121 (461)
Q Consensus 69 ~---------~~-----~~~------~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiA 121 (461)
. .. ... ...+. +.+.+ .|++++.+++++++..+.. ++.+.+++++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 00 000 00011 22233 4899999999999875544 356677778999999999
Q ss_pred cCCCc
Q 012545 122 TGSTV 126 (461)
Q Consensus 122 tG~~~ 126 (461)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99776
No 216
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.38 E-value=2.5e-06 Score=84.30 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=66.0
Q ss_pred eEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCcccccccCCC------------CCCCCCCceeecCC
Q 012545 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPE------------GTARLPGFHVCVGS 72 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 72 (461)
||+|||||+||+++|..|++. |++ |+|+|+.+...-.++ ..++... ...+++.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~t---w~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHT---WSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCccc---ceecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 666 999999864221111 0111100 00111111111100
Q ss_pred C------C-----CCCCHhH-HHHcCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCc
Q 012545 73 G------G-----ERLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 73 ~------~-----~~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~ 126 (461)
. . ...+.+. ++..+..++.++.|..++.+ .|.+.+|+++.+|.||-|.|..+
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0 0 0011121 22223346667788888543 46668888999999999999765
No 217
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.38 E-value=3.5e-07 Score=92.24 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=29.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-----cccccc--------cCC---CCCCCCCC-----
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-----ALSKAY--------LFP---EGTARLPG----- 65 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-----~~~~~~--------~~~---~~~~~~~~----- 65 (461)
||||||||+||++||..+++.|.+ |+|||+.+....... ...... +.. ........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999997 999999986321100 000000 000 00000000
Q ss_pred -ce----eecCC-CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE---EEcCC---CcEEecCEEEEccCC
Q 012545 66 -FH----VCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS 124 (461)
Q Consensus 66 -~~----~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~liiAtG~ 124 (461)
.. ..+.. .....+.+++.+.|+++++++.+.++..++.. |.+.+ ..++.++.+|-|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 00111 11223556667889999999999998877643 44433 457899999999994
No 218
>PRK06996 hypothetical protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=87.97 Aligned_cols=124 Identities=21% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCC-CCCcEEEEeCCCCCC-C--CCC-cc-------ccccc-CCCCCCCCCCce
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAP-Y--ERP-AL-------SKAYL-FPEGTARLPGFH 67 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~-~--~~~-~~-------~~~~~-~~~~~~~~~~~~ 67 (461)
|..+.+||+||||||+|+++|..|++.|. +..+|+|+|+.+... . .|. .+ .+.+- +......+....
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 44567899999999999999999999873 213499999975311 1 010 00 00000 000000000000
Q ss_pred ee---------c-----CC----------CCCCCCHhHHHHcCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEecCEE
Q 012545 68 VC---------V-----GS----------GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATG---LIFKYQIL 118 (461)
Q Consensus 68 ~~---------~-----~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~l 118 (461)
.. + .. .....+.+.+.+.++++..++++..++..... +.+.++ +++++|.|
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIA 166 (398)
T ss_pred EecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEE
Confidence 00 0 00 00111233345578999999999888655544 444433 57999999
Q ss_pred EEccCC
Q 012545 119 VIATGS 124 (461)
Q Consensus 119 iiAtG~ 124 (461)
|-|.|.
T Consensus 167 IgADG~ 172 (398)
T PRK06996 167 VQAEGG 172 (398)
T ss_pred EECCCC
Confidence 999995
No 219
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.37 E-value=5.2e-07 Score=88.50 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 6999999999999999999999998 999999876
No 220
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=1.6e-06 Score=90.82 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||||||||.||++||.++++.|. ..+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 46899999999999999999998752 223999999864
No 221
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.36 E-value=1.1e-06 Score=85.54 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=62.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC-CCCCCCCC--cc---cccccCCC------------CCCCC-----
Q 012545 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVAPYERP--AL---SKAYLFPE------------GTARL----- 63 (461)
Q Consensus 7 dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~-~~~~~~~~--~~---~~~~~~~~------------~~~~~----- 63 (461)
||+|||||+||..||+.+++.|.+ |+|+... +....-.| .+ .++.+..+ ....+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 899999999999999999999998 9999433 22111111 10 01111000 00000
Q ss_pred -----CCceeecCCCCCCC----CHhHHHH-cCcEEEcCCeEEEEeCCCCE---EEcCCCcEEecCEEEEccCC
Q 012545 64 -----PGFHVCVGSGGERL----LPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 64 -----~~~~~~~~~~~~~~----~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~liiAtG~ 124 (461)
|........-+... ..+.++. .+++++.. +|.++..++.. |.+.+|+.+.+|.+|+|||.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00000000000011 1222233 68999875 89999877654 67789999999999999998
No 222
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.35 E-value=3.3e-06 Score=85.87 Aligned_cols=101 Identities=22% Similarity=0.375 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCcc------CCcc----cC--HHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWC------MPRL----FT--ADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~------~~~~----~~--~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ ++.. .+ .++.....+.+++.||+++.+++|+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 1111 11 1223334567888999999999999
Q ss_pred EEEecCCCCEEEEEe-CCCcEEe--cCEEEEccCCCCChh
Q 012545 257 GFTTNADGEVKEVKL-KDGRTLE--ADIVVVGVGGRPLIS 293 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~-~~G~~i~--aD~vi~a~G~~p~~~ 293 (461)
+++. +++...+.. .+|+++. +|.+|+|+|.+|+..
T Consensus 81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 9986 333333432 2356666 999999999998754
No 223
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.35 E-value=6.6e-06 Score=82.95 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.+++.|++++++++++++.. +++++.++... +|+ ++.++.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 567788899999999999999999999998 47788888876 454 5789999999996654
No 224
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.35 E-value=1.6e-05 Score=75.94 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---------------CcEEecCEEEEccCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---------------GRTLEADIVVVGVGG 288 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---------------G~~i~aD~vi~a~G~ 288 (461)
..+.+++-+..++.||+++.+..+.++.-+++|.+.++.++| |-++.+..-|+|-|-
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 345667777778888888888888888877788888887754 235777778887774
No 225
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.35 E-value=2e-06 Score=86.98 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=74.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+|+|||+|++|+.+|..|++.|.+ |+++++.+... . +. +. .. ......+.+++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~-~-~~-----~~----~~-----------~~~~~~~~l~~ 191 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERIL-N-KL-----FD----EE-----------MNQIVEEELKK 191 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccC-c-cc-----cC----HH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999885320 0 00 00 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++.+...+.+.+++++++|.+++|+|.+|.
T Consensus 192 ~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 192 HEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred cCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 8999999999999987665445667888999999999999984
No 226
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.34 E-value=1.2e-05 Score=82.20 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=33.2
Q ss_pred cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 247 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 247 V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+++++++|++|+.++++ ..|++++|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCH
Confidence 689999999999874433 4577888888999999999884
No 227
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.34 E-value=4.1e-06 Score=86.33 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
||+..+||+|||||+.|+++|++|+++|++ |+|+|+++.
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~d~ 40 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLK---VLLCEKDDL 40 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCc---EEEEECCCC
Confidence 455679999999999999999999999987 999999864
No 228
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.34 E-value=2.2e-05 Score=80.04 Aligned_cols=54 Identities=30% Similarity=0.410 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCc-EEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 233 DIAAFYEGYYANKGI-KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV-~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+...+.+.++..+. +++++++|++|+..+++ ..|.+.+|+++.+|.||+|+..
T Consensus 219 G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 219 GLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred HHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence 333444444444333 79999999999874333 4677889999999999999873
No 229
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.33 E-value=2.4e-06 Score=85.38 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+||||||||++||..|++.|++ |+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 5899999999999999999999998 999999753
No 230
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.33 E-value=3.6e-06 Score=85.36 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=34.8
Q ss_pred CcEEEcCCeEEEEeCC---------CCEEEcCCCcEEecCEEEEccCCCccc
Q 012545 86 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
+++++.++++.+++.. .-++.+.+|+++++|.||.|.|....+
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence 4999999999998642 235677888899999999999988744
No 231
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=7.4e-06 Score=85.80 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+..++.||+++.++.++++..+++|++.++.. .+|+ .+.++.||+|||--
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 56677777777778899999999999998755788888765 3564 57899999999953
No 232
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.32 E-value=7.4e-07 Score=91.77 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
...+.+.+.+.++++|++++.+++|++|.. +++++..|++.+|+++++|.||+++|..
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 356788899999999999999999999987 4577789999999999999999998853
No 233
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.31 E-value=1.1e-05 Score=82.53 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE---eCCC--cEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDG--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G--~~i~aD~vi~a~G~~p 290 (461)
+..+.+.+.+.+++.|++++.+++|++++.++++.+ .+. +.+| .++.+|.||+|+|...
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 466788888888999999999999999987434332 233 2334 3689999999999754
No 234
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.31 E-value=8.7e-06 Score=82.79 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHH-hcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCc--EEecCEEEEccCCCCC
Q 012545 232 ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 232 ~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~--~i~aD~vi~a~G~~p~ 291 (461)
..+.+.+.+.+. ..|++++++++|+++...+++.. .++ +.+|+ ++.+|.||+|.|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 455667767775 45999999999999987424332 333 34453 6899999999997753
No 235
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.30 E-value=1e-05 Score=84.77 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcC----cEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKG----IKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~G----V~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+.+++.+ |+++.++.++++..+++|++.+|... +++ .+.++.||+|||--
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 199 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGP 199 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCC
Confidence 4556666666665443 88999999999887556888888764 343 47899999999953
No 236
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.29 E-value=1.2e-05 Score=84.65 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
...+...+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 55677777777778899999999999987644677877765 3564 57899999999953
No 237
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.27 E-value=3.3e-06 Score=85.59 Aligned_cols=59 Identities=34% Similarity=0.635 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
..+-+.+.+..++.||+++.+ +|+++..+++|.+..|++++|+++++|.+|=|+|++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 356667788888999999987 57777776788888999999999999999999998653
No 238
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.27 E-value=3.3e-05 Score=72.34 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=44.9
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
........+++.-...+-++.+++.|..+..-++| +.+...+|++-.+|.||+|+=-..
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dq 273 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQ 273 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHH
Confidence 45555667777666666679999999999987788 356667899889999999876433
No 239
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.27 E-value=3.1e-06 Score=88.01 Aligned_cols=36 Identities=22% Similarity=0.538 Sum_probs=33.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||||+.|+++|+.|+++|++ |+|||++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~---V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLR---CILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCC
Confidence 369999999999999999999999987 999999764
No 240
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.27 E-value=3.8e-06 Score=83.48 Aligned_cols=98 Identities=15% Similarity=0.297 Sum_probs=74.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... . .. ++. .......+.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l-~------~~--------~~~-------~~~~~l~~~l~~ 195 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLL-A------SL--------MPP-------EVSSRLQHRLTE 195 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCccc-c------hh--------CCH-------HHHHHHHHHHHh
Confidence 46899999999999999999998876 99999886421 0 00 000 001234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++.+.. .+.+.+++++.+|.+|+|+|..|.
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 9999999999999986554 366778888999999999999884
No 241
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.26 E-value=9.8e-06 Score=79.07 Aligned_cols=95 Identities=25% Similarity=0.300 Sum_probs=69.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEc-cCCccCCc------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVY-PEPWCMPR------------------------------------------ 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~-~~~~~~~~------------------------------------------ 228 (461)
.|+|||+|..|+|+|..+++.|.+|.++. ..+.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 38999999999999999999999999993 33222110
Q ss_pred ----------ccCH-HHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 229 ----------LFTA-DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 229 ----------~~~~-~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..|. ...+.+.+.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0111 234556677766 678886 578999987 578999999999999999999999998
No 242
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.25 E-value=3.1e-05 Score=79.22 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC--CC--CEEEEEeCCC---cEEecCEEEEccCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKLKDG---RTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~~~G---~~i~aD~vi~a~G~~ 289 (461)
..-+.+.+.+.|+++|++++++++|++|+.++ ++ ++..+.+.+| +++.+|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 44456778888999999999999999998633 23 2566667554 569999999999953
No 243
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=5.2e-06 Score=87.62 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||+|.||++||..+++.|.+ |+|+||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence 58999999999999999999999887 999999864
No 244
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.25 E-value=2.7e-06 Score=84.41 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 6999999999999999999999987 99999863
No 245
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.25 E-value=2.9e-05 Score=68.23 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=107.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------cC-------------------------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------------- 231 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------~~------------------------------- 231 (461)
....|+|+|+|++|+-+|..|++.|.+|.+++++-.+.... |+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence 45689999999999999999999999999999886543221 11
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CCcEEecCEEEEccCCCCChh-hh-hcc
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LF-KGQ 298 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~~-~~-~~~ 298 (461)
.++...+....-+.|.+++....|..+...++.++.+|... |.-.++++.||-|||.....- ++ +..
T Consensus 109 ~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 109 AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 13334444555567899999999998876444366666553 334789999999999877653 22 111
Q ss_pred ----ccc-CCCcEEeC--CCC---CC--CCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHHHHHHhccc
Q 012545 299 ----VAE-NKGGIETD--DFF---KT--SADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMATE 360 (461)
Q Consensus 299 ----~~~-~~g~i~vd--~~~---~t--~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~~ 360 (461)
... ..+....+ +.+ .| -.|++|++|=.+.--... + |+ +...-=..+|+.||+.++..+
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~---p-RMGPiFGgMllSGkkaAe~i~e~L 259 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGL---P-RMGPIFGGMLLSGKKAAEEILEKL 259 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCC---c-ccCchhhhhhhchHHHHHHHHHHh
Confidence 111 11222222 111 12 489999999877532211 1 11 222223467888888877654
No 246
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=1.1e-05 Score=85.11 Aligned_cols=34 Identities=18% Similarity=0.452 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
.+||+|||+|.||++||.++++.|.+ |+|+||..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCC
Confidence 57999999999999999999999887 99999854
No 247
>PLN02661 Putative thiazole synthesis
Probab=98.22 E-value=8.9e-05 Score=71.36 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=104.2
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccCCccCCcc--------------------------cC----
Q 012545 183 EAIKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL--------------------------FT---- 231 (461)
Q Consensus 183 ~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~~~--------------------------~~---- 231 (461)
+.+.....-.|+|||+|..|+-+|..|++. |.+|+++++...+.... ++
T Consensus 85 ~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dg 164 (357)
T PLN02661 85 TDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQEN 164 (357)
T ss_pred hhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCC
Confidence 333333456899999999999999999976 89999999875432100 00
Q ss_pred -------HHHHHHH-HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC------C--------CcEEecCEEEEccCCC
Q 012545 232 -------ADIAAFY-EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D--------GRTLEADIVVVGVGGR 289 (461)
Q Consensus 232 -------~~~~~~~-~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~--------G~~i~aD~vi~a~G~~ 289 (461)
..+.+.+ .+.+++.|++++.++.+.++.. +++++.++.+. + ...+.++.||+|||..
T Consensus 165 y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 165 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 1111223 3344557899999999999887 45677777641 1 1268999999999966
Q ss_pred CChh-h-hh----ccccc---CCCcEEeCCC--C---CC--CCCCEEEeCcccccCccccCcceee-ccHHHHHHHHHHH
Q 012545 290 PLIS-L-FK----GQVAE---NKGGIETDDF--F---KT--SADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQA 352 (461)
Q Consensus 290 p~~~-~-~~----~~~~~---~~g~i~vd~~--~---~t--~~~~vya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~a 352 (461)
+... . +. .+... ......++.- + .| -+|++|++|=.+.--.. . .|+ +....=..+|+.|
T Consensus 244 g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g---~-~rmgp~fg~m~~sg~k~ 319 (357)
T PLN02661 244 GPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDG---S-PRMGPTFGAMMISGQKA 319 (357)
T ss_pred CcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcC---C-CccCchhHhHHhhhHHH
Confidence 5321 1 11 11100 0111222211 0 12 38999999987754221 1 111 2223334678999
Q ss_pred HHHHhccc
Q 012545 353 VKTIMATE 360 (461)
Q Consensus 353 a~~i~~~~ 360 (461)
|+.++..+
T Consensus 320 a~~~~~~l 327 (357)
T PLN02661 320 AHLALKAL 327 (357)
T ss_pred HHHHHHHH
Confidence 99988765
No 248
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.22 E-value=6.7e-06 Score=82.48 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=75.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+..|..+++.|.+ |+|+|+.+..- .. ....+ ...+...+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iL-----------p~-~D~ei-----------~~~~~~~l~~ 226 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRIL-----------PG-EDPEI-----------SKELTKQLEK 226 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-----------Cc-CCHHH-----------HHHHHHHHHh
Confidence 56899999999999999999999987 99999997521 00 00000 1345566677
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCc--EEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~liiAtG~~~~~~ 129 (461)
.+++++.++.+..++.... .+.+.+++ .+.+|++++|+|.+|+.+
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 7899999999999876654 45666665 689999999999999643
No 249
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.22 E-value=5.1e-06 Score=84.76 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+.... . .... ......+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~-----------~-~d~e-----------~~~~l~~~L~~ 223 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP-----------G-EDED-----------IAHILREKLEN 223 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc-----------c-ccHH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 999998854210 0 0000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcC-CC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+...+.+. ++ .++.+|.+++|+|.+|+.
T Consensus 224 ~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 224 DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 899999999999998766554432 33 368999999999999853
No 250
>PRK10262 thioredoxin reductase; Provisional
Probab=98.22 E-value=4e-05 Score=74.39 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=72.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC---cc--------CCc----ccCHHHHHHHHHHHHhcCcEEEcCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MPR----LFTADIAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~---~~--------~~~----~~~~~~~~~~~~~l~~~GV~v~~~~ 253 (461)
+.++|+|||+|+.|+.+|..+.++|.++++++... .+ ++. ...+.+.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46789999999999999999999999998886321 10 011 123455777788888888888765
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 254 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 254 ~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+++.++. .+....+..+++ .+.+|.||+|+|..|+..
T Consensus 84 ~v~~v~~--~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 84 HINKVDL--QNRPFRLTGDSG-EYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEEe--cCCeEEEEecCC-EEEECEEEECCCCCCCCC
Confidence 5667765 222334544444 789999999999988643
No 251
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.21 E-value=6.5e-06 Score=81.41 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=73.8
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEEccCCccCC-ccc---------CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 192 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMP-RLF---------TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~-~~~---------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
+|+|||+|+.|+.+|..+.+. +.+|+++++.+...- ..+ ..++...+.+.+++.||+++.+ +|+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 688999998875321 111 1233334567778889999875 78999
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+. +++ .|.+.+|+++.+|.+|+|+|.+|+...
T Consensus 80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ec--ccC--EEEECCCCcccccEEEEccCCCCCCCC
Confidence 76 332 578889989999999999998887543
No 252
>PLN02661 Putative thiazole synthesis
Probab=98.21 E-value=6.3e-06 Score=79.17 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|++||++|++. |++ |+|+|+...
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~ 127 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVS 127 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCcc
Confidence 58999999999999999999986 666 999999865
No 253
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.21 E-value=2.3e-06 Score=76.91 Aligned_cols=137 Identities=25% Similarity=0.358 Sum_probs=97.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--cccCH-----------HHH--H--HHHHHHHhcCcEEEcCCc
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~~~~~-----------~~~--~--~~~~~l~~~GV~v~~~~~ 254 (461)
+|+|||+|+.|+.+|..|++.+.+++++++.+.... ..+.. ... + .+.+.++..+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653110 00011 001 1 334455778999999999
Q ss_pred EEEEEecCCCC-------EEEEEeCCCcEEecCEEEEccCCCCChhhh--------------------------------
Q 012545 255 AVGFTTNADGE-------VKEVKLKDGRTLEADIVVVGVGGRPLISLF-------------------------------- 295 (461)
Q Consensus 255 v~~i~~~~~g~-------~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~-------------------------------- 295 (461)
+.++... ++. .......++.++.+|.+|+|+|.+|+...+
T Consensus 81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred ccccccc-ccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence 9999873 331 112244566789999999999977552210
Q ss_pred ------hccccc-CCCcEEeCCCCCCCCCCEEEeCcccccC
Q 012545 296 ------KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 329 (461)
Q Consensus 296 ------~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~ 329 (461)
..++.. ++|++.||+++||+.|+|||+|||++.+
T Consensus 160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccC
Confidence 012333 5788999999999999999999999865
No 254
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.21 E-value=4.7e-06 Score=90.27 Aligned_cols=98 Identities=27% Similarity=0.433 Sum_probs=74.9
Q ss_pred EEEECCCHHHHHHHHHHHHCC---CcEEEEccCCccC------CcccC-----HHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 193 AVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~------~~~~~-----~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
|+|||+|+.|+.+|..+.+.+ .+|+++++.+++. +.++. +++.....+.+++.||+++++++|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999987754 6899999887642 11111 112222356778899999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+. +. ..|++.+|+++.+|.+|+|||.+|+...
T Consensus 81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 86 33 3578889999999999999999887543
No 255
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.20 E-value=2.6e-05 Score=81.70 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEecC-EEEEccC-CCCChhhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 296 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~aD-~vi~a~G-~~p~~~~~~ 296 (461)
...+...+.+.+++.|++++++++++++..+++|++.+|... +|+ .+.++ .||+|+| +.-|.++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 345566677788899999999999999998667888887653 343 46787 5999888 555565553
No 256
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.20 E-value=5.2e-06 Score=82.82 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 57999999999999999999999998 999999874
No 257
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=7.8e-06 Score=81.71 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+||||||+|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 57999999999999999999999997 999999874
No 258
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=5.9e-06 Score=86.63 Aligned_cols=35 Identities=34% Similarity=0.533 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+||||||+|.||++||.++++.|.+ |+||||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccC
Confidence 357999999999999999999998876 99999974
No 259
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.20 E-value=5.3e-06 Score=75.00 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+|+|||+|+||++||..|+..|.. |+|+||+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence 3699999999999999999999987 999999864
No 260
>PRK07236 hypothetical protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=80.01 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=74.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----ccCHHHHHHHH------------------------
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAAFYE------------------------ 239 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~~~~~~~~~~------------------------ 239 (461)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999988753321 02222222221
Q ss_pred -------------------HHHHh--cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 240 -------------------GYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 240 -------------------~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+.|.+ .+++++.++++++++.++++ ..+++++|+++.+|.||.|-|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 13568899999999874333 46888999999999999999976654
No 261
>PRK07538 hypothetical protein; Provisional
Probab=98.19 E-value=6.2e-06 Score=83.03 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 3899999999999999999999987 999999864
No 262
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.18 E-value=7.3e-06 Score=82.13 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+|+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 36899999999999999999999987 999999864
No 263
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.17 E-value=1.3e-06 Score=70.46 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCCcEEEEEE--eCCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 012545 404 ATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 459 (461)
Q Consensus 404 ~~~~~~~~~~--~~~~i~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 459 (461)
..++|.|+++ ++|+|+|+|++|+++++ ++.++.+|+++++++++....-+.++|++
T Consensus 46 ~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se 104 (110)
T PF02852_consen 46 ETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSE 104 (110)
T ss_dssp TTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGH
T ss_pred CcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhH
Confidence 3677888887 47999999999999988 69999999999999887777777777765
No 264
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.17 E-value=0.00011 Score=73.48 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----------------cC----------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FT---------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----------------~~---------------------- 231 (461)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+..+. +.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 368999999999999999999999999999875431110 00
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 232 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 232 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..+-+++.+..++.|++++.+++++.+..++++.+.. +..++.++.++.||.|.|.
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVG-VRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEE-EEcCCEEEEcCEEEECCCc
Confidence 1234567778889999999999999999855554433 3344478999999999985
No 265
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.17 E-value=1.5e-05 Score=80.46 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-c---------CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-~---------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
..++|+|||+|+.|+.+|..|...+.+|++|++.++..-.. + ..++...+.+.++..|++++. .+|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence 45789999999999999999977678999999887643211 1 122333455667778888875 588999
Q ss_pred EecCCCCEEEEEe--------CCCcEEecCEEEEccCCCCChh
Q 012545 259 TTNADGEVKEVKL--------KDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 259 ~~~~~g~~~~v~~--------~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+. +.+...+.. .+|.++++|.+|+|+|.+|+..
T Consensus 88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 76 333323311 4677899999999999987643
No 266
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=9.5e-06 Score=83.12 Aligned_cols=98 Identities=17% Similarity=0.300 Sum_probs=71.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||++|+.+|..|++.|.+ |+|+++.+... +.. ...+ .....+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il---~~~---------~~~~-----------~~~l~~~l~~ 233 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL---PTE---------DAEL-----------SKEVARLLKK 233 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC---CcC---------CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999998876 99999886411 000 0000 1234566788
Q ss_pred cCcEEEcCCeEEEEeC--CCCE--EEcCCC--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADI--ASKT--LLSATG--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~--~~~~--v~~~~~--~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++. +.+. +.+.++ +++++|.+++|+|.+|+.
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 8999999999999874 3332 223455 368999999999999953
No 267
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.16 E-value=5.5e-05 Score=73.92 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=35.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
+..||||||+|.+||+||.+|.+.|++ |+|+|..++..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~G 43 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVG 43 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcC
Confidence 578999999999999999999999998 99999998754
No 268
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=9e-06 Score=83.13 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=73.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.. ... ......+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------~~~-----------~~~~l~~~l~~ 225 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL---PGE---------DKE-----------ISKLAERALKK 225 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC---CcC---------CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999986421 000 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++++.+++.+... +.+.++ +++++|.+|+|+|.+|..
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 99999999999999865544 334444 579999999999999853
No 269
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.15 E-value=2.8e-05 Score=74.21 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=74.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------- 228 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 4899999999999999999999999999988542110
Q ss_pred ------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCcEEecCEEEEccCCCCC
Q 012545 229 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 229 ------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~~i~aD~vi~a~G~~p~ 291 (461)
....++.+.+.+.+++.|++++.+++++++..++++ ..+.+. ++.++.+|.||.|.|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR--VVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE--EEEEEcCccEEEEeCEEEECCCcchH
Confidence 011245567778888899999999999998763333 234444 3458999999999997653
No 270
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.15 E-value=2.5e-05 Score=78.67 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g-~~~~~V~vie~~~~ 42 (461)
++|+|||||++||++|..|++.| .+ |+|+|+.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence 37999999999999999999987 46 999999865
No 271
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.15 E-value=1.2e-05 Score=87.38 Aligned_cols=100 Identities=25% Similarity=0.504 Sum_probs=76.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccCCccC------Cccc----CHHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~------~~~~----~~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
.++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. +..+ ..++.....+.+++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 46899998887642 1111 1122223356778899999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.++.. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99976 33 357788898999999999999988654
No 272
>PRK14694 putative mercuric reductase; Provisional
Probab=98.14 E-value=1.2e-05 Score=82.18 Aligned_cols=96 Identities=20% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++....+.. ...+ .....+.+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~~-------------~~~~-----------~~~l~~~l~~ 230 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQE-------------DPAV-----------GEAIEAAFRR 230 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCCC-------------CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999999876 9999875321100 0000 1245667778
Q ss_pred cCcEEEcCCeEEEEeCCCCEE--EcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.++..+ .+.+ .++.+|.+++|+|.+|+.
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 999999999999998665543 3333 469999999999999953
No 273
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.14 E-value=1.4e-05 Score=84.41 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~ 42 (461)
.+.+||+||||||+||++|..|++. |++ |+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence 4578999999999999999999995 887 999999864
No 274
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=3.2e-06 Score=83.75 Aligned_cols=119 Identities=22% Similarity=0.314 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCC--C---cccccccCCCCCCCC----------C--
Q 012545 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YER--P---ALSKAYLFPEGTARL----------P-- 64 (461)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~--~---~~~~~~~~~~~~~~~----------~-- 64 (461)
+..|||+|||||.||+.||...+|.|.+ ++|+.-+.... +.. | .+.|+.+..+- +.+ .
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrEI-DALGG~Mg~~~D~~~I 77 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVREI-DALGGLMGKAADKAGI 77 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEee-hhccchHHHhhhhcCC
Confidence 3569999999999999999999999998 78887764421 111 1 11222222110 000 0
Q ss_pred Ccee---ecCCC--------CCCCCHhHHH-----HcCcEEEcCCeEEEEeCCCC----EEEcCCCcEEecCEEEEccCC
Q 012545 65 GFHV---CVGSG--------GERLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGS 124 (461)
Q Consensus 65 ~~~~---~~~~~--------~~~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~liiAtG~ 124 (461)
.+.. ..|.. +...+..+++ ..++.++++ .|.++..++. -|.+.+|..+.++.||++||.
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0000 00000 0011122222 257888887 7777765333 367889999999999999996
Q ss_pred Cc
Q 012545 125 TV 126 (461)
Q Consensus 125 ~~ 126 (461)
--
T Consensus 157 FL 158 (621)
T COG0445 157 FL 158 (621)
T ss_pred cc
Confidence 43
No 275
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.13 E-value=9e-06 Score=82.42 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=73.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... +. +. .. ......+.+++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~-----~d----~~-----------~~~~l~~~l~~ 201 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL-----MD----AD-----------MNQPILDELDK 201 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh-----cC----HH-----------HHHHHHHHHHh
Confidence 36899999999999999999998876 99999885311 00 00 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++. ..+.+.+++++++|.+++|+|.+|+.
T Consensus 202 ~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 202 REIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred cCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence 9999999999999863 46777778889999999999999853
No 276
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=8.1e-06 Score=80.28 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc--------cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~--------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.... ++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 46799999999999999999999999999999987654211 2334444455667777999999988765532
Q ss_pred --cCCCCEEEEEe--CCCcEEecCEEEEccCCC-CC
Q 012545 261 --NADGEVKEVKL--KDGRTLEADIVVVGVGGR-PL 291 (461)
Q Consensus 261 --~~~g~~~~v~~--~~G~~i~aD~vi~a~G~~-p~ 291 (461)
..++....... .++..+.+|.||+|+|.. |.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 00111111111 112247899999999973 43
No 277
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.12 E-value=1.3e-05 Score=81.51 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+.... . + ... ......+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~-------~-~----d~~-----------~~~~l~~~l~~ 219 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILR-------G-F----DDD-----------MRALLARNMEG 219 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCc-------c-c----CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 999998754210 0 0 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++... ..+.+.+++++++|.+++|+|..|+
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 899999999999987533 3455667778999999999999884
No 278
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.11 E-value=1.4e-05 Score=78.30 Aligned_cols=100 Identities=21% Similarity=0.353 Sum_probs=78.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcc----------cCHHHHHHHHHHHHhcC-cEEEcCCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV 256 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~----------~~~~~~~~~~~~l~~~G-V~v~~~~~v~ 256 (461)
.+++||+|+|+-|+.++..|.+.- .+|++|++.+..+-.. -..++.-.+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 578999999999999999999874 8899999988653211 12344456677887566 888854 788
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 294 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~ 294 (461)
+|+. +. ..|.++++..+++|.+|+|+|..++..-
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcCC
Confidence 9976 44 3688888789999999999999887753
No 279
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.11 E-value=1e-05 Score=88.69 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+||++++.+.+.. . -++.++.+...+.+++.||++++++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 478999999999999999999999999999998765422 1 1466777777888999999999886542
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC-CC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR-PL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~-p~ 291 (461)
..+++++.....+|.|++|+|.. |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 13555565556799999999974 54
No 280
>PRK06116 glutathione reductase; Validated
Probab=98.10 E-value=1.5e-05 Score=81.18 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=74.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. + . .. ......+.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~-----~-~---~~-----------~~~~l~~~L~~ 220 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPL---RG-----F-D---PD-----------IRETLVEEMEK 220 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCc---cc-----c-C---HH-----------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999875311 00 0 0 00 01234566788
Q ss_pred cCcEEEcCCeEEEEeCCC-C--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIAS-K--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+. . .+.+.+++++.+|.+++|+|.+|+.
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 999999999999997543 2 3566678889999999999999853
No 281
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.10 E-value=2.9e-06 Score=74.81 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||+||||||+||+||+.|++.|++ |+++|++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCC
Confidence 58999999999999999999999998 999999854
No 282
>PLN02487 zeta-carotene desaturase
Probab=98.10 E-value=6e-05 Score=78.14 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=48.3
Q ss_pred cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC--CC--CEEEEEe---CCCcEEecCEEEEccCCC
Q 012545 230 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKL---KDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 230 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~---~~G~~i~aD~vi~a~G~~ 289 (461)
+...+.+.+.+.++++|++++++++|.+|+.+. ++ ++.++++ .+++.+.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688999999999999999999999998742 23 3677887 344579999999999954
No 283
>PRK07846 mycothione reductase; Reviewed
Probab=98.10 E-value=1.8e-05 Score=80.44 Aligned_cols=97 Identities=23% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.. ...+ .....+ +.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll---~~~---------d~~~-----------~~~l~~-l~~ 218 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL---RHL---------DDDI-----------SERFTE-LAS 218 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---ccc---------CHHH-----------HHHHHH-HHh
Confidence 47899999999999999999998876 99999985321 000 0000 011222 235
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.+++++.++.+.+++.++. .+.+.+++++++|.+++|+|.+|+.
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 6899999999999976544 3556678889999999999999954
No 284
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.09 E-value=2e-05 Score=85.55 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-------c-cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------L-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... . ++.+....-.+.+++.||++++++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 4679999999999999999999999999999987654221 1 24455556667888899999999876 2221
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+.+...+|.||+|||.++.
T Consensus 617 -----------e~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhheeccCCEEEECcCCCCC
Confidence 22234568999999998754
No 285
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.09 E-value=1.7e-05 Score=81.13 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++++|||+|+.|+.+|..|++.|.+ |+|+++.+... + .+. .. ....+.+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~-----~~d----~~-----------~~~~l~~~l~~ 228 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLL---S-----FLD----DE-----------ISDALSYHLRD 228 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC---C-----cCC----HH-----------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999885311 0 000 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+..++..+. .+.+.+++++++|.+++|+|.+|+.
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 8999999999999875443 3455677789999999999999853
No 286
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.09 E-value=4.7e-05 Score=79.47 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=76.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc--------C---Cc---ccCHHHHHHHHHHHHhcCcEEEcCCcEE
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC--------M---PR---LFTADIAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~--------~---~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
-.|+|||+|+.|+.+|..+++.|.+|+++++.+.- . +. ....++.+.+.+.+++.|++++ +++|+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 47999999999999999999999999999975420 0 11 0124667778888888999986 67888
Q ss_pred EEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 257 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 257 ~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
++.. ++....+.+.+| ++.+|.+|+|+|.+|...
T Consensus 84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 8876 334446777666 689999999999988654
No 287
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.08 E-value=4.2e-06 Score=60.79 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=27.6
Q ss_pred EEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 10 IIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
|||||++||++|..|++.|++ |+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCccc
Confidence 899999999999999999876 9999999764
No 288
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.08 E-value=7.3e-06 Score=82.63 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCc-----EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-----~i~aD~vi~a~G~~p 290 (461)
+..+.-.......++|-+++..++|+++.. +++ +.+|...|.. ++.++.||.|+|-..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 566777778888999999999999999998 334 7788876542 589999999999543
No 289
>PLN02463 lycopene beta cyclase
Probab=98.08 E-value=4.8e-05 Score=76.79 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=74.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-Ccc----------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL---------------------------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-~~~---------------------------------------- 229 (461)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... +..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999999865311 100
Q ss_pred ---cCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 230 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 230 ---~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
-..++.+.+.+.+.+.|++++ ..+|++++..+++ ..|++++|+++.||.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 011233455666677899997 5689999873333 5788899999999999999998754
No 290
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.08 E-value=3.7e-05 Score=58.55 Aligned_cols=80 Identities=21% Similarity=0.449 Sum_probs=62.9
Q ss_pred eEEEecCCcceEEccCCCC--cEEEecCCccccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 012545 373 YFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 450 (461)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 450 (461)
||||..++..++.+|...+ +.+..++.. ..+|..+|+++|+++|+..++ .+.++..+..+|+.+..+ +.+.|
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l 74 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL 74 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence 6899999999999997653 355666533 568888999999999999997 678899999999999977 78899
Q ss_pred hccCCCcc
Q 012545 451 KNEGLSFA 458 (461)
Q Consensus 451 ~~~~~~~~ 458 (461)
.++++++-
T Consensus 75 ~d~~~~L~ 82 (85)
T PF14759_consen 75 ADPSVDLR 82 (85)
T ss_dssp HSTTSHHH
T ss_pred cCCCCChH
Confidence 99998764
No 291
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.06 E-value=1.2e-05 Score=81.96 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.. . ..+.++.....+.+++.||+++.++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 468999999999999999999999999999998876521 1 13567777888889999999998877521
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+.+++. .+.+|.||+|+|..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222333 37799999999975
No 292
>PRK06370 mercuric reductase; Validated
Probab=98.06 E-value=2.3e-05 Score=80.15 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... . . . ... ......+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l-~--~----~-----~~~-----------~~~~l~~~l~~ 224 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLL-P--R----E-----DED-----------VAAAVREILER 224 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCC-c--c----c-----CHH-----------HHHHHHHHHHh
Confidence 47899999999999999999999876 99999986421 0 0 0 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.++.. +.+ .++.++++|.+|+|+|.+|+.
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 99999999999999765432 333 234579999999999999853
No 293
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.06 E-value=4.5e-05 Score=77.21 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC-CCCEEEEEeCC-CcEEecCEEEEccC-CCCChhhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKD-GRTLEADIVVVGVG-GRPLISLFK 296 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~~~-G~~i~aD~vi~a~G-~~p~~~~~~ 296 (461)
...+.+.+.+.+++.|++++++++++++..++ ++.+..+...+ +.++.++.||+|+| +..|.+++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence 45677888888999999999999999998743 56676766543 35899999999999 555555543
No 294
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=2.2e-05 Score=80.37 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +. + ... ......+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~~----~-----d~~-----------~~~~l~~~l~~ 225 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRAL---PN----E-----DAE-----------VSKEIAKQYKK 225 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcC---Cc----c-----CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 99999875311 00 0 000 01234567788
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcC--CC--cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++.+... +.+. ++ +++++|.+++|+|.+|+
T Consensus 226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 99999999999999765543 3332 45 36999999999999984
No 295
>PRK06834 hypothetical protein; Provisional
Probab=98.05 E-value=6.6e-05 Score=77.03 Aligned_cols=101 Identities=33% Similarity=0.544 Sum_probs=77.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC---Cc--ccC----------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PR--LFT---------------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~~--~~~---------------------------------- 231 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++ .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999999875321 00 000
Q ss_pred ----------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 232 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 232 ----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
..+.+.+.+.+++.|++++.++++++++.++++ ..+++.+|+++.+|.||.|.|.++...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 122334556677889999999999999874443 457778888999999999999877543
No 296
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.05 E-value=6.9e-05 Score=84.61 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 358999999999999999999999987 999999865
No 297
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.04 E-value=2.6e-05 Score=79.80 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... .+ . ...+ .....+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-~~-------~----d~~~-----------~~~l~~~l~~ 219 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLL-PR-------E----EPEI-----------SAAVEEALAE 219 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCC-Cc-------c----CHHH-----------HHHHHHHHHH
Confidence 47899999999999999999999876 99999985421 00 0 0000 1234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcC---CCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.++. .+.+. +++++++|.+++|+|.+|+.
T Consensus 220 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 8999999999999876543 23332 23579999999999999854
No 298
>PRK12839 hypothetical protein; Provisional
Probab=98.04 E-value=0.00014 Score=75.87 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCCc-EE-ecCEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR-TL-EADIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G~-~i-~aD~vi~a~G-~~p~~~~~ 295 (461)
+..+...+.+.+++.|++++.++.++++..++++++.+|.. .+|+ .+ .++.||+|+| +.-|.+++
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence 55667777888889999999999999997655678888765 3443 23 4589999998 44444443
No 299
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=1.4e-05 Score=83.22 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=40.7
Q ss_pred CCCcEEeCCCCCCCCCCEEEeCcccccCccccCccee-eccHHHHHHHHHHHHHHHhcc
Q 012545 302 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 359 (461)
Q Consensus 302 ~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 359 (461)
..|+|.||.+.||++|++||+|+|++... |..+. -.....|...|+.|+++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999975432 11110 134567788899999988754
No 300
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.03 E-value=2.5e-05 Score=79.37 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... . . + + ..+ .....+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-~------~-~-d---~~~-----------~~~~~~~l~~ 219 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-R------S-F-D---SMI-----------SETITEEYEK 219 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-c------c-c-C---HHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 99999885311 0 0 0 0 000 1234566778
Q ss_pred cCcEEEcCCeEEEEeCCC---CEEEcCCC-cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIAS---KTLLSATG-LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~-~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.+++.+. ..+.+.++ +.+.+|.+++|+|.+|+
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 899999999999987532 23556666 57999999999999984
No 301
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.02 E-value=8e-05 Score=78.30 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHH----hcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYA----NKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~----~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~ 288 (461)
...+...+.+.++ +.||+++.++.++++..++++++.+|... +|+ .+.|+.||+|||-
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 3444444444443 34899999999999987556688888764 453 5789999999995
No 302
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00016 Score=68.96 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=75.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCc---------------cCCcccCHHHHHHHHHHHHhcCcEEEcCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~---------------~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~ 254 (461)
-.|+|||+|+.|+-+|-.+.+.+.+ +.+++.... +-.....+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4689999999999999999999988 555544311 111124568888888888999999987 67
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 255 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 255 v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
|.+++..++ ...|++.+|+ ++|+.||+|+|..+...
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 777775222 6789999996 99999999999776554
No 303
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.02 E-value=0.00017 Score=75.12 Aligned_cols=64 Identities=27% Similarity=0.211 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEec-CEEEEccC-CCCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~a-D~vi~a~G-~~p~~~~~ 295 (461)
...+...+.+.+++.||+++++++++++.. +++++.+|... +|. .+.+ +.||+|+| +.-|.+++
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence 566777888888999999999999999986 46788887543 443 3555 58999998 44454444
No 304
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.01 E-value=2.7e-05 Score=79.83 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +.. ... ......+.+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------d~~-----------~~~~~~~~l~~ 236 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFL---AAA---------DEQ-----------VAKEAAKAFTK 236 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccC---CcC---------CHH-----------HHHHHHHHHHH
Confidence 46999999999999999999998876 99999886321 000 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+.+++.+... +.+.+ + +++++|.+++|+|.+|..
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 89999999999999865443 33333 3 468999999999999853
No 305
>PRK08244 hypothetical protein; Provisional
Probab=97.99 E-value=8.4e-05 Score=76.65 Aligned_cols=102 Identities=25% Similarity=0.414 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 228 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999987532110
Q ss_pred cc--------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCCCCh
Q 012545 229 LF--------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 229 ~~--------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~p~~ 292 (461)
.+ -..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|.+...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 00 01334556667778899999999999998744442223333356 479999999999987754
No 306
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.99 E-value=2.7e-05 Score=78.16 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=76.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHHc
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (461)
.+++|||+|+.|+.+|..|+++|++ |+++|+.+...-. +.. +. ....+.+.++++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~~--------~~~~~~~~l~~~ 191 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------PE--------VAEELAELLEKY 191 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------HH--------HHHHHHHHHHHC
Confidence 6999999999999999999999987 9999999753210 000 00 123567788889
Q ss_pred CcEEEcCCeEEEEeCCCCE-----EEcCCCcEEecCEEEEccCCCc
Q 012545 86 GIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTV 126 (461)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~liiAtG~~~ 126 (461)
||+++.+..+..++...+. +...++..+++|.+++++|.+|
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 9999999999999876643 4666778899999999999998
No 307
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.99 E-value=8.8e-05 Score=74.21 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------cc-----
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------LF----- 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------~~----- 230 (461)
+.+|+|||+|..|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 568999999999999999999999999999987542110 00
Q ss_pred --------C----------------HHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 231 --------T----------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 231 --------~----------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
+ .++.+.+.+.+.+. +++++.+++++++..++++ ..+++.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence 0 01123344444454 4999999999999863333 4578889989999999999
Q ss_pred cCCCCCh
Q 012545 286 VGGRPLI 292 (461)
Q Consensus 286 ~G~~p~~ 292 (461)
.|.....
T Consensus 162 dG~~S~~ 168 (396)
T PRK08163 162 DGVKSVV 168 (396)
T ss_pred CCcChHH
Confidence 9987655
No 308
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.98 E-value=4.2e-05 Score=78.17 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|..|+.+|..|++.|.+ |+++++.+...-. . ... ......+.+++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~-------~-----d~~-----------~~~~l~~~L~~ 230 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG-------E-----DAD-----------AAEVLEEVFAR 230 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC-------C-----CHH-----------HHHHHHHHHHH
Confidence 36899999999999999999998876 9999987531100 0 000 01234567788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+.+++++++|.+++|+|.+|+.
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 9999999999999864433 3555678889999999999999853
No 309
>PRK07045 putative monooxygenase; Reviewed
Probab=97.98 E-value=0.00012 Score=73.16 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=78.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--c---------------------------c-----------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--R---------------------------L----------- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~---------------------------~----------- 229 (461)
.-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 34799999999999999999999999999997764310 0 0
Q ss_pred ------------cC-------HHHHHHHHHHHH-hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 230 ------------FT-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 230 ------------~~-------~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+ .++.+.+.+.+. ..|+++++++++++++.++++.+..|++++|+++.+|+||-|-|.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 00 012233344443 3579999999999999866665567889999999999999999987
Q ss_pred CChh
Q 012545 290 PLIS 293 (461)
Q Consensus 290 p~~~ 293 (461)
....
T Consensus 165 S~vR 168 (388)
T PRK07045 165 SMIR 168 (388)
T ss_pred hHHH
Confidence 6543
No 310
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.98 E-value=1.7e-05 Score=80.66 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=70.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 46789999999999999999999999999999876542 11 14667777777888999999999875411
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCC-CCCh
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 292 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~-~p~~ 292 (461)
.+.+.+. ...+|.||+|+|. .|..
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 2333333 3468999999997 5643
No 311
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.98 E-value=0.0002 Score=75.17 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC-Cc--EEec-CEEEEccCC-CCChhhh
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVGG-RPLISLF 295 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G~--~i~a-D~vi~a~G~-~p~~~~~ 295 (461)
...+...+.+.+++.||+++.++.++++.. +++++.+|...+ |+ ++.+ +.||+|+|. ..|.+++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 556778888899999999999999999886 367787877644 33 4676 789999994 4444444
No 312
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.98 E-value=3.9e-05 Score=78.96 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|||+|||||+||+.+|..+++.|.+ |+|+|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 6999999999999999999999987 99999874
No 313
>PLN02507 glutathione reductase
Probab=97.97 E-value=3.8e-05 Score=79.03 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+|+++.+... . . + . .. ......+.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l-~------~-~-d---~~-----------~~~~l~~~l~~ 256 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPL-R------G-F-D---DE-----------MRAVVARNLEG 256 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcC-c------c-c-C---HH-----------HHHHHHHHHHh
Confidence 46899999999999999999998876 99999875310 0 0 0 0 00 01234556788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.+++.+.. .+.+.+++++++|.+++|+|.+|+.
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 9999999999999875433 3556677789999999999999853
No 314
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.96 E-value=3.9e-05 Score=78.45 Aligned_cols=97 Identities=12% Similarity=0.209 Sum_probs=70.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+++|+.+... . .+ ... ......+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il------~-~~-----d~~-----------~~~~l~~~l~~ 227 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC------P-GT-----DTE-----------TAKTLQKALTK 227 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC------C-CC-----CHH-----------HHHHHHHHHHh
Confidence 57899999999999999999999876 99999875321 0 00 000 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcC-----CCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSA-----TGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~-----~~~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+.++..+... +.+. +++++++|.+++|+|.+|+
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 89999999999999754333 2221 2357999999999999984
No 315
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.96 E-value=0.00012 Score=75.37 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=89.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------c----------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F---------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------~---------- 230 (461)
|+|+|||+|.+|+-.+..|.+.|.+++++++++.+..-+ +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999986542210 0
Q ss_pred -CHHHHHHHHHHHHhcCc--EEEcCCcEEEEEecCCC---CEEEEEeCC-Cc--EEecCEEEEccCC--CCChhhh-hcc
Q 012545 231 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVKEVKLKD-GR--TLEADIVVVGVGG--RPLISLF-KGQ 298 (461)
Q Consensus 231 -~~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g---~~~~v~~~~-G~--~i~aD~vi~a~G~--~p~~~~~-~~~ 298 (461)
..++.+++++..+..++ .++++++|++++..++. ....|++.+ |+ +..+|.||+|+|. .|+.+.. -.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 14678888888888877 58899999999874432 234566644 42 4568999999995 4655431 123
Q ss_pred cccCCCcEEeCCCCCC----CCCCEEEeCcccc
Q 012545 299 VAENKGGIETDDFFKT----SADDVYAVGDVAT 327 (461)
Q Consensus 299 ~~~~~g~i~vd~~~~t----~~~~vya~GD~~~ 327 (461)
++.=+|.+.-...++. ..+.|-++|-..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 3332455555544443 4678888887554
No 316
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.96 E-value=0.00011 Score=73.81 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=75.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc----------cCCc--ccC---------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPR--LFT--------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~----------~~~~--~~~--------------------------- 231 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. ..++ .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999998651 0000 000
Q ss_pred -----------------------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 232 -----------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 232 -----------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
..+.+.+.+.+++.|++++.++++++++.++++ ..|++.+|+++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 012234455666779999999999999874443 4678889989999999
Q ss_pred EEccCCCCCh
Q 012545 283 VVGVGGRPLI 292 (461)
Q Consensus 283 i~a~G~~p~~ 292 (461)
|.|.|.....
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999987654
No 317
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.95 E-value=0.00013 Score=73.11 Aligned_cols=99 Identities=30% Similarity=0.440 Sum_probs=75.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCc-----------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 899999986431000
Q ss_pred ----------cc---------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 229 ----------LF---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 229 ----------~~---------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
.+ ...+.+.+.+.+++.|++++.+++|++++.+++ ...+++++|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE--GVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--EEEEEECCCCEEEeCEEE
Confidence 00 012345566777788999999999999986333 346788899899999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
.|.|.....
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999987654
No 318
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.95 E-value=5.1e-05 Score=77.23 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=69.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. +. ..+ .....+ +.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll---~~-----~d----~~~-----------~~~l~~-~~~ 221 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLL---RH-----LD----EDI-----------SDRFTE-IAK 221 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCccc---cc-----cC----HHH-----------HHHHHH-HHh
Confidence 46899999999999999999998876 99999875411 00 00 000 011222 234
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.+++++.++.+.+++.++. .+.+.+++++++|.+++|+|.+|+
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 6899999999999976544 345567778999999999999984
No 319
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.93 E-value=4.6e-05 Score=78.46 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++... .. ... .. ......+.+++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~--l~--~~d---------~~-----------~~~~l~~~l~~ 234 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIP--LR--GFD---------RQ-----------CSEKVVEYMKE 234 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCcc--cc--cCC---------HH-----------HHHHHHHHHHH
Confidence 35899999999999999999999876 999986421 10 000 00 01245667788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+..+..... .+.+.+++++.+|.+++|+|.+|+.
T Consensus 235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 9999999988887764332 3556678889999999999999853
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.92 E-value=5.1e-05 Score=79.57 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++....+. . ...+ .....+.+++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~---------~----d~~~-----------~~~l~~~l~~ 322 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFFR---------E----DPAI-----------GEAVTAAFRA 322 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCccccc---------c----CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 999997532110 0 0000 1234567788
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+..++.++.. +.+.++ ++.+|.+++|+|..|+.
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 99999999999998755443 333344 59999999999999853
No 321
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.91 E-value=0.00014 Score=72.27 Aligned_cols=98 Identities=22% Similarity=0.348 Sum_probs=73.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccCCc--------ccC-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LFT------------------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~--------~~~------------------------------- 231 (461)
.|+|||+|+.|+-+|..|++.| .+|+++++.+..-.. .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3799999999999999999999 999999986432110 000
Q ss_pred ------------------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 232 ------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 232 ------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
.++.+.+.+.+.+ .|++++.+++++++..++++ ..+++++|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 1223444555566 49999999999999874443 46778889899999999999
Q ss_pred CCCCC
Q 012545 287 GGRPL 291 (461)
Q Consensus 287 G~~p~ 291 (461)
|....
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97653
No 322
>PRK07208 hypothetical protein; Provisional
Probab=97.91 E-value=1.4e-05 Score=82.17 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe--CCCc--EEecCEEEEccCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G~--~i~aD~vi~a~G~ 288 (461)
...+.+.+.+.+++.|++++++++|++|..++++.+..+.. .+|+ ++.+|.||+++..
T Consensus 217 ~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 217 PGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred cchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 34677888888999999999999999999854554434443 2453 6899999999874
No 323
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.91 E-value=5.2e-05 Score=77.58 Aligned_cols=97 Identities=14% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
..+++|||||+.|+.+|..+... |.+ |+|+++.+... +. + ... ......+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il---~~-----~----d~~-----------~~~~l~~~ 240 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMIL---RG-----F----DST-----------LRKELTKQ 240 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCccc---cc-----c----CHH-----------HHHHHHHH
Confidence 46899999999999999776654 554 99999886421 00 0 000 01244566
Q ss_pred HHHcCcEEEcCCeEEEEeCCC---CEEEcCCCcEEecCEEEEccCCCcc
Q 012545 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~liiAtG~~~~ 127 (461)
+++.|++++.++.+.++.... ..+.+.+++++++|.+++|+|.+|.
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 788999999999999987432 2466667778999999999999984
No 324
>PRK09126 hypothetical protein; Provisional
Probab=97.91 E-value=0.00018 Score=71.82 Aligned_cols=101 Identities=27% Similarity=0.394 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-----------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR----------------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~----------------------------------- 228 (461)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+. ..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999865310 00
Q ss_pred --------ccC---------------HHHHHHHHHHH-HhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 229 --------LFT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 229 --------~~~---------------~~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
.++ ..+.+.+.+.+ +..|++++.++++++++.++++ ..|++++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 000 00112222333 3468999999999999873333 467888999999999999
Q ss_pred ccCCCCChh
Q 012545 285 GVGGRPLIS 293 (461)
Q Consensus 285 a~G~~p~~~ 293 (461)
|.|..+...
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999877653
No 325
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.90 E-value=5.9e-05 Score=76.61 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=71.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +. + ...+ .....+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~----~-----~~~~-----------~~~l~~~l~~ 211 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFL---PR----E-----DRDI-----------ADNIATILRD 211 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC---CC----c-----CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999998876 99999875311 00 0 0000 1234566788
Q ss_pred cCcEEEcCCeEEEEeCCCCEE--EcCCCcEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~liiAtG~~~~ 127 (461)
.|++++.++.+.+++.++..+ ...++ ++.+|.+++|+|.+|+
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPA 255 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcC
Confidence 999999999999997655443 33344 5899999999999985
No 326
>PRK12831 putative oxidoreductase; Provisional
Probab=97.90 E-value=3.1e-05 Score=78.96 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Ccc-cCH-HHHHHHHHHHHhcCcEEEcCCcEEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTA-DIAAFYEGYYANKGIKIIKGTVAVGFT 259 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~~-~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~ 259 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46789999999999999999999999999999866431 110 222 3666667888899999999985521
Q ss_pred ecCCCCEEEEEeCCC-cEEecCEEEEccCC-CCCh
Q 012545 260 TNADGEVKEVKLKDG-RTLEADIVVVGVGG-RPLI 292 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~-~p~~ 292 (461)
.+.+++. +.+.+|.||+|+|. .|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222332 24569999999997 4643
No 327
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.90 E-value=5.4e-05 Score=77.59 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=69.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+.+|..|++.|.+ |+++++....+. .. ..+ .....+.+++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~----~d---------~~~-----------~~~l~~~L~~ 232 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG----FD---------QDC-----------ANKVGEHMEE 232 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCc---EEEEEecccccc----cC---------HHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 999987421110 00 000 1234567788
Q ss_pred cCcEEEcCCeEEEEeCCCC--EEEcCCC---cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~liiAtG~~~~ 127 (461)
.||+++.++.+..+..... .+.+.++ +++++|.+++|+|..|+
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 9999999988877764333 3444444 37999999999999985
No 328
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.90 E-value=3.5e-05 Score=78.65 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46789999999999999999999999999999887542 11 146677777778899999999999876321
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+.+++ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12468999999998764
No 329
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.89 E-value=0.00032 Score=70.96 Aligned_cols=138 Identities=26% Similarity=0.287 Sum_probs=94.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccCCccCCc-----------------------------cc--CHHHHHH
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR-----------------------------LF--TADIAAF 237 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~-----------------------------~~--~~~~~~~ 237 (461)
..+|+|||+|.+|+-+|..|.+.|.. +.++++.+.+... .+ -..+.++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 45799999999999999999999998 9999988542210 00 0126778
Q ss_pred HHHHHHhcCcE--EEcCCcEEEEEecCCCCEEEEEeCCCcEE--ecCEEEEccCC--CCChhhhhcccccCCCcEEeC-C
Q 012545 238 YEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDGRTL--EADIVVVGVGG--RPLISLFKGQVAENKGGIETD-D 310 (461)
Q Consensus 238 ~~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~G~~i--~aD~vi~a~G~--~p~~~~~~~~~~~~~g~i~vd-~ 310 (461)
+...+++.++. +..++.|..+..++++....|++++|.+. .+|.||+|+|. .|+.+-+. +...-.|.+.-- +
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhc
Confidence 88888888765 44667777777766777788999888664 59999999995 44443322 222222333322 2
Q ss_pred ---CCCCCCCCEEEeCccccc
Q 012545 311 ---FFKTSADDVYAVGDVATF 328 (461)
Q Consensus 311 ---~~~t~~~~vya~GD~~~~ 328 (461)
..+-.-++|-++|--++.
T Consensus 167 ~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CCCccccCCCeEEEECCCccH
Confidence 223356889999876653
No 330
>PRK06184 hypothetical protein; Provisional
Probab=97.89 E-value=0.00017 Score=74.60 Aligned_cols=99 Identities=24% Similarity=0.405 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------cc------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------LF------ 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------~~------ 230 (461)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 46999999999999999999999999999987432110 00
Q ss_pred -----------------------C-HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCcEEecCEEE
Q 012545 231 -----------------------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 283 (461)
Q Consensus 231 -----------------------~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~~i~aD~vi 283 (461)
+ ..+.+.+.+.+++.|+++++++++++++.++++ ..+++ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--VTARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EEEEEEeCCCeEEEEeCEEE
Confidence 0 112345566777889999999999999874444 24444 556789999999
Q ss_pred EccCCCCC
Q 012545 284 VGVGGRPL 291 (461)
Q Consensus 284 ~a~G~~p~ 291 (461)
.|.|.+..
T Consensus 162 gADG~~S~ 169 (502)
T PRK06184 162 GADGGRSF 169 (502)
T ss_pred ECCCCchH
Confidence 99997653
No 331
>PRK14727 putative mercuric reductase; Provisional
Probab=97.89 E-value=6.3e-05 Score=77.17 Aligned_cols=96 Identities=19% Similarity=0.304 Sum_probs=70.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+..|..|++.|.+ |+++++....+. .. .. ......+.+++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~~---------~d----~~-----------~~~~l~~~L~~ 240 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLFR---------ED----PL-----------LGETLTACFEK 240 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCCc---------ch----HH-----------HHHHHHHHHHh
Confidence 36899999999999999999998876 999987532110 00 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.|++++.++.+..++.+... +...++ ++.+|.+++|+|..|+.
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 99999999999988754443 333444 58999999999999853
No 332
>PLN02568 polyamine oxidase
Probab=97.87 E-value=1.8e-05 Score=81.84 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=36.6
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCC--CCCcEEEEeCCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKEAVA 43 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~--~~~~V~vie~~~~~ 43 (461)
||++.+||+|||||++||+||..|++.|. +..+|+|+|+....
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 88888999999999999999999999871 11249999999764
No 333
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.87 E-value=0.00022 Score=71.15 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=77.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC-ccCCcc-----------------c---------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCMPRL-----------------F--------------------- 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~-~~~~~~-----------------~--------------------- 230 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.+.. +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 3579999999999999999999999999999972 221110 0
Q ss_pred ---------------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeC-CCcEEecCEEEEccC
Q 012545 231 ---------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVG 287 (461)
Q Consensus 231 ---------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~-~G~~i~aD~vi~a~G 287 (461)
-.++.+.+.+.+.+.+ |+++.+++|+.++.++ +.+ .++++ +|+++.||+||-|=|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v-~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGV-TVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-Cce-EEEEcCCCcEEecCEEEECCC
Confidence 0133556667777666 9999999999999844 333 37777 999999999999999
Q ss_pred CCCCh
Q 012545 288 GRPLI 292 (461)
Q Consensus 288 ~~p~~ 292 (461)
.....
T Consensus 160 ~~S~v 164 (387)
T COG0654 160 ANSAV 164 (387)
T ss_pred CchHH
Confidence 76544
No 334
>PRK07588 hypothetical protein; Provisional
Probab=97.85 E-value=0.00025 Score=70.90 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=72.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------------------ 229 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 68999999999999999999999999998775431100
Q ss_pred --cC-----------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 --~~-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
++ .++.+.+.+.+ ..|++++++++|++++.++++ ..+++++|+++++|.||-|-|.+.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 00 01112222223 347999999999999874333 468889999999999999999766
Q ss_pred Chh
Q 012545 291 LIS 293 (461)
Q Consensus 291 ~~~ 293 (461)
...
T Consensus 159 ~vR 161 (391)
T PRK07588 159 HVR 161 (391)
T ss_pred cch
Confidence 553
No 335
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.85 E-value=4e-05 Score=75.02 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=80.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHH
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
....||++|+|..|+.+|..|.....+ |++|++++. +.. .++.+ .......+.++
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~-~~~------~lf~~---------------~i~~~~~~y~e 266 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPW-LLP------RLFGP---------------SIGQFYEDYYE 266 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhcCce---EEEEccCcc-chh------hhhhH---------------HHHHHHHHHHH
Confidence 356799999999999999999997665 999999964 111 11111 11245678899
Q ss_pred HcCcEEEcCCeEEEEeCCC--C--EEEcCCCcEEecCEEEEccCCCccccccc
Q 012545 84 EKGIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVSITSLT 132 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~liiAtG~~~~~~~~~ 132 (461)
+.+++++.++.+.+++... + .|.+.+++++.+|.|++.+|++|..+...
T Consensus 267 ~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 267 NKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred hcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 9999999999998886544 2 37788999999999999999999665443
No 336
>PRK05868 hypothetical protein; Validated
Probab=97.85 E-value=0.00016 Score=71.74 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--c--cC-------------HH--------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--FT-------------AD-------------------- 233 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--~--~~-------------~~-------------------- 233 (461)
++|+|+|+|+.|+.+|..|++.|.+|+++++.+.+... . +. +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999987543210 0 00 00
Q ss_pred ---------------------HHHHHHHHHH---hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 234 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 234 ---------------------~~~~~~~~l~---~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
....+.+.|. ..|+++++++++++++.+++ ...+++++|+++++|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~--~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGD--SVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCC--eEEEEECCCCeEEeCEEEECCCCC
Confidence 0112223332 35899999999999986322 356889999999999999999977
Q ss_pred CChh
Q 012545 290 PLIS 293 (461)
Q Consensus 290 p~~~ 293 (461)
....
T Consensus 160 S~vR 163 (372)
T PRK05868 160 SNVR 163 (372)
T ss_pred chHH
Confidence 6553
No 337
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.84 E-value=0.00025 Score=71.70 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------cc--------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------LF-------------------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------~~-------------------------- 230 (461)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999986432100 00
Q ss_pred ---------------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 ---------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
-.++-+++.+.+++.|++++.+++|+++..+ ++.+..+. .+|.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0011234566677789999999999998763 45444444 567789999999999975
Q ss_pred C
Q 012545 290 P 290 (461)
Q Consensus 290 p 290 (461)
.
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 4
No 338
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.84 E-value=0.00025 Score=70.72 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc---------cc-------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------LF------------------------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------~~------------------------------- 230 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 47999999999999999999999999999987553110 00
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 231 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 231 ------------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
...+.+.+.+.+++.| ++++ +++++++..++++ ..+++.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 1123344556667777 9998 8899999763333 4688888888999999999
Q ss_pred cCCCCCh
Q 012545 286 VGGRPLI 292 (461)
Q Consensus 286 ~G~~p~~ 292 (461)
.|.....
T Consensus 163 dG~~S~v 169 (388)
T PRK07608 163 DGAHSWV 169 (388)
T ss_pred CCCCchH
Confidence 9987643
No 339
>PTZ00058 glutathione reductase; Provisional
Probab=97.83 E-value=0.00011 Score=76.41 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+... +. + . ..+ .....+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il---~~-----~-d---~~i-----------~~~l~~~L~~ 290 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL---RK-----F-D---ETI-----------INELENDMKK 290 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc---cc-----C-C---HHH-----------HHHHHHHHHH
Confidence 57899999999999999999999876 99999875311 00 0 0 000 1234566778
Q ss_pred cCcEEEcCCeEEEEeCCCC---EEEc-CCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASK---TLLS-ATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~-~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.+..+.+++.+.. .+.. .+++++++|.+++|+|.+|+.
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 8999999999999875432 2333 334579999999999998853
No 340
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.83 E-value=8.9e-05 Score=75.79 Aligned_cols=98 Identities=12% Similarity=0.221 Sum_probs=70.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. +. .. ......+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~d----~~-----------~~~~~~~~l~~ 222 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL---PL-----ED----PE-----------VSKQAQKILSK 222 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---cc-----hh----HH-----------HHHHHHHHHhh
Confidence 47899999999999999999999876 99999886421 00 00 00 01234556677
Q ss_pred cCcEEEcCCeEEEEeCCCC-EEEc----CCCcEEecCEEEEccCCCcccc
Q 012545 85 KGIELILSTEIVRADIASK-TLLS----ATGLIFKYQILVIATGSTVSIT 129 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~v~~----~~~~~~~~d~liiAtG~~~~~~ 129 (461)
. ++++.++.+.+++.... .+.+ .+++++++|.+++|+|.+|+.+
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 7 99999999999975543 3432 2335699999999999998543
No 341
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.83 E-value=0.00027 Score=70.32 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=74.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c--ccC-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R--LFT------------------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~--~~~------------------------------- 231 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. . .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 389999999999999999999999999998853200 0 000
Q ss_pred -------------------------HHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEc
Q 012545 232 -------------------------ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 285 (461)
Q Consensus 232 -------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a 285 (461)
.++.+.+.+.+++.| ++++.+++|++++.++ +. ..+++++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DH-VELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Ce-eEEEECCCCEEEeeEEEEe
Confidence 112334555566667 9999999999998733 33 4678889999999999999
Q ss_pred cCCCCCh
Q 012545 286 VGGRPLI 292 (461)
Q Consensus 286 ~G~~p~~ 292 (461)
.|.....
T Consensus 159 dG~~S~v 165 (385)
T TIGR01988 159 DGANSKV 165 (385)
T ss_pred CCCCCHH
Confidence 9976543
No 342
>PLN02697 lycopene epsilon cyclase
Probab=97.82 E-value=0.00027 Score=72.64 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~----------------------------------------- 229 (461)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998653221110
Q ss_pred c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 ~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+ ...+.+.+.+.+.+.|+++ .+++|+++..+++ ....+.+.+|.++.|+.||.|.|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 0122345566667789998 5779999986333 33335667888999999999999876
No 343
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.82 E-value=0.00016 Score=66.94 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCC---CEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g---~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
...+-+.++..|-.+.++-++..+..+.++ ....|.-..+++..+..+|-|+|.+...--.
T Consensus 199 ~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa 262 (453)
T KOG2665|consen 199 TLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAA 262 (453)
T ss_pred HHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHH
Confidence 344445588889999999999998864443 2233443446789999999999987654433
No 344
>PRK07190 hypothetical protein; Provisional
Probab=97.80 E-value=0.0003 Score=72.19 Aligned_cols=99 Identities=16% Similarity=0.286 Sum_probs=74.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------------c-
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------L- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------~- 229 (461)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+..... .
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 46999999999999999999999999999887532100 0
Q ss_pred ---------cC------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 230 ---------FT------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 230 ---------~~------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
+. ..+.+.+.+.+++.|++++.+++|++++.++++ ..+.+.+|+++.|+.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 012234456677889999999999999874444 3456678889999999999997
Q ss_pred CCC
Q 012545 289 RPL 291 (461)
Q Consensus 289 ~p~ 291 (461)
+..
T Consensus 164 ~S~ 166 (487)
T PRK07190 164 RSF 166 (487)
T ss_pred CHH
Confidence 653
No 345
>PRK06753 hypothetical protein; Provisional
Probab=97.80 E-value=0.00017 Score=71.44 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc----cCHHH---------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTADI--------------------------------- 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~----~~~~~--------------------------------- 234 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 68999999999999999999999999999886532110 00000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChh
Q 012545 235 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 235 ---------------~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
+..+.+.|.+ .+.++++++++++++.+ ++. ..+++++|+++.+|+||-|-|.+..+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHHH
Confidence 1112233322 14578899999999863 333 467889999999999999999776553
No 346
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.80 E-value=6.9e-05 Score=76.83 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=68.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+++. +. .++.++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 34799999999999999999999999999999887642 11 135567777778889999999999876411
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+. .++....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 00 011235789999999987
No 347
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.80 E-value=0.00045 Score=61.25 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=74.0
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------cC-------------------------
Q 012545 183 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------- 231 (461)
Q Consensus 183 ~~l~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------~~------------------------- 231 (461)
+.+.+.....|+|||+|++|+-+|..|++.|.+|.++++...+.... |+
T Consensus 10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g 89 (230)
T PF01946_consen 10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG 89 (230)
T ss_dssp HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE
T ss_pred HHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe
Confidence 33333356789999999999999999999999999999875542211 11
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-----------CCcEEecCEEEEccCCCCChh
Q 012545 232 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 232 ------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.++...+....-+.|++++....|+.+...+++++.+|... |.-.+.+..||-|||...+.-
T Consensus 90 ~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 90 YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 13334444444558999999999999876444777777663 234799999999999877653
No 348
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=2.6e-05 Score=79.35 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
++++|||||||+|||+||++|...|++ |+|+|..+..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCCcC
Confidence 468999999999999999999999998 99999998743
No 349
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.79 E-value=7e-05 Score=76.05 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEccCCccCCcc---------cCHHHHHHHHHHHHhcCcEEEcCCcEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRL---------FTADIAAFYEGYYANKGIKIIKGTVAVG 257 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~--~g~~Vtli~~~~~~~~~~---------~~~~~~~~~~~~l~~~GV~v~~~~~v~~ 257 (461)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+..-. ....+...+.+.++..||+++.+..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46799999999999999999986 799999999998754210 1123344566777888999988755421
Q ss_pred EEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 258 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 258 i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
.+.+++- ...+|.||+|+|..+
T Consensus 105 ----------dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 105 ----------DVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred ----------cccHHHH-hhhCCEEEEecCCCC
Confidence 2333333 246899999999875
No 350
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.79 E-value=0.0001 Score=75.70 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=64.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++++|+|+|.+|+++|..|.++|.+|+++++.+. +....+.+.|++.||+++.+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 467999999999999999999999999999986542 234455677888999998775432
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
....+|.||+++|..|+.+++
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHH
Confidence 024589999999999999865
No 351
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=5.9e-05 Score=81.68 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=70.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. -++.++.+...+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46789999999999999999999999999999865431 11 13556666767888999999999875411
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCC-CCCh
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 292 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~-~p~~ 292 (461)
.+++++.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 233444445679999999997 4653
No 352
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.77 E-value=0.00038 Score=69.43 Aligned_cols=97 Identities=19% Similarity=0.278 Sum_probs=72.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------c--------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------L-------------- 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------~-------------- 229 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3799999999999999999999999999976532100 0
Q ss_pred -c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 230 -F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 -~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+ ...+.+.+.+.+.+.|++++ ..+++.+..+ ++....|++++|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 01333555666677899886 5578888763 2334567888888999999999999876
No 353
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.77 E-value=0.00017 Score=70.00 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 232 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 232 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
..++..+.+.+++.|-++.+++.|.+|.-+ +|++.+|.++||+++.+..|+...+.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCch
Confidence 467888899999999999999999999984 59999999999999999888886663
No 354
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.76 E-value=0.00025 Score=73.23 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC-ccCC-----c--------------cc--------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCMP-----R--------------LF-------------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~-~~~~-----~--------------~~-------------------- 230 (461)
-.|+|||+|..|+++|..+++.|.+|.++++.. .+.. . .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999998863 1100 0 00
Q ss_pred -------------CH-HHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 231 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 231 -------------~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
|. ...+.+.+.+++. |++++ ...|+++.. +++.+.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0123344445544 78875 557888775 466778899999999999999999994
No 355
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.76 E-value=0.00028 Score=69.07 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=73.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------------------------------------------ 229 (461)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 58999999999999999999999999999875532110
Q ss_pred -------------------------c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEecC
Q 012545 230 -------------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD 280 (461)
Q Consensus 230 -------------------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~aD 280 (461)
+ -..+.+.+.+.+++.|++++++++++.+..+.++....+... +|+ ++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0 024566777888888999999999999987555433333333 343 68999
Q ss_pred EEEEccCCCCChh
Q 012545 281 IVVVGVGGRPLIS 293 (461)
Q Consensus 281 ~vi~a~G~~p~~~ 293 (461)
+||-|-|.+..+.
T Consensus 163 lvVgADG~~S~vR 175 (356)
T PF01494_consen 163 LVVGADGAHSKVR 175 (356)
T ss_dssp EEEE-SGTT-HHH
T ss_pred eeecccCcccchh
Confidence 9999999877553
No 356
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.76 E-value=3.1e-05 Score=79.92 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---Cc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~--~i~aD~vi~a~G~~p 290 (461)
+..+...+.+..+++|++++.+++|+++..+ ++ ...+++.+ |+ ++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4566666777788999999999999999863 33 24555543 53 689999999999654
No 357
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.76 E-value=0.00012 Score=80.14 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 261 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 261 (461)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... ..+.+..+...+.+++.||+++++... .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 468999999999999999999999999999987653221 124455556667788899999887421 1
Q ss_pred CCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 262 ADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 262 ~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+.+.+.+...+|.||+|+|.++.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11222334568999999998753
No 358
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.75 E-value=0.00036 Score=70.26 Aligned_cols=101 Identities=25% Similarity=0.386 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC----Cc--ccC--------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----PR--LFT-------------------------------- 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~----~~--~~~-------------------------------- 231 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+- +. .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4579999999999999999999999999999875421 00 000
Q ss_pred -----------------------HHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCC-C--cEEecCEEEE
Q 012545 232 -----------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVV 284 (461)
Q Consensus 232 -----------------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G--~~i~aD~vi~ 284 (461)
..+.+.+.+.+.+. |+++++++++++++.++++ ..|++.+ + .++.||+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 11122333444443 7999999999999874443 3466653 2 3699999999
Q ss_pred ccCCCCCh
Q 012545 285 GVGGRPLI 292 (461)
Q Consensus 285 a~G~~p~~ 292 (461)
|.|.....
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99987655
No 359
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=0.00017 Score=73.84 Aligned_cols=97 Identities=12% Similarity=0.280 Sum_probs=68.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... +... ..+ .....+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il---~~~d---------~~~-----------~~~~~~~l~~ 227 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVI---PAAD---------KDI-----------VKVFTKRIKK 227 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCC---CcCC---------HHH-----------HHHHHHHHhh
Confidence 46899999999999999999999876 99999886411 0000 000 1123445556
Q ss_pred cCcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~liiAtG~~~~~ 128 (461)
. ++++.++.+..++..+.. +.+.+ + +++++|.+++|+|.+|+.
T Consensus 228 ~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred c-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 6 999999999988754433 33332 2 469999999999999954
No 360
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.73 E-value=0.00052 Score=68.38 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=72.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc--cC---C---c--ccCH----------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P---R--LFTA---------------------------- 232 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~--~~---~---~--~~~~---------------------------- 232 (461)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+. +. . + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 3699999999999999999999999999997641 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEE
Q 012545 233 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 284 (461)
Q Consensus 233 ---------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~ 284 (461)
.+...+.+.+++ .|++++.++++++++.++++ ..+++++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 001112222233 37999999999999874444 468889999999999999
Q ss_pred ccCCCCChh
Q 012545 285 GVGGRPLIS 293 (461)
Q Consensus 285 a~G~~p~~~ 293 (461)
|.|......
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999877654
No 361
>PRK08013 oxidoreductase; Provisional
Probab=97.72 E-value=0.0005 Score=68.90 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------ccC-----------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFT----------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------~~~----------------------------- 231 (461)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999999999999999987541100 000
Q ss_pred ---------------------------HHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 232 ---------------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 232 ---------------------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
..+.+.+.+.+.+. |+++++++++++++.++++ ..+++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 01122333444443 7999999999999874443 46778899999999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
-|-|.+...
T Consensus 162 gADG~~S~v 170 (400)
T PRK08013 162 GADGANSWL 170 (400)
T ss_pred EeCCCCcHH
Confidence 999977654
No 362
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.71 E-value=0.00018 Score=67.06 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+..+||+|||+|.|||.||.+|+..|.+ |+++|++..
T Consensus 2 d~~~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge 39 (552)
T COG3573 2 DGLTADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE 39 (552)
T ss_pred CcccccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence 34578999999999999999999999987 999999765
No 363
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.69 E-value=0.00048 Score=68.77 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC----------------------------Ccc------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----------------------------PRL------------ 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~----------------------------~~~------------ 229 (461)
.-.|+|||+|+.|+-+|..|++.|.+|+++++.+... ...
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3479999999999999999999999999999764100 000
Q ss_pred ----------c---------------CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 230 ----------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 230 ----------~---------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
+ ...+.+.+.+.+++. |++++.+++++++..++++ ..|.+++|+++.+|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 0 011223444555555 9999999999999863333 46778888899999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
.|.|.....
T Consensus 163 ~AdG~~S~v 171 (391)
T PRK08020 163 GADGANSQV 171 (391)
T ss_pred EeCCCCchh
Confidence 999987754
No 364
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.68 E-value=0.002 Score=63.04 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=40.4
Q ss_pred CHhHHHHcCcEEEcCCeEEEEeCCCC---EEEcCCCcEEecCEEEEccCCC
Q 012545 78 LPEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGST 125 (461)
Q Consensus 78 ~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~liiAtG~~ 125 (461)
+.+.+.+.|++++++++|.+++.+.. .+.+.+|.++.+|+||+|.|-.
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 44556678999999999999998775 5778899899999999999943
No 365
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.68 E-value=0.0008 Score=67.45 Aligned_cols=137 Identities=20% Similarity=0.197 Sum_probs=93.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------------c
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------L 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------~ 229 (461)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+..- .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 689999999999999999999999999999998653210 0
Q ss_pred -cC-HHHHHHHHHHHHhcCc--EEEcCCcEEEEEecCCCCEEEEEeCCC----cEEecCEEEEccCCC--CChhhhhcc-
Q 012545 230 -FT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ- 298 (461)
Q Consensus 230 -~~-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~G----~~i~aD~vi~a~G~~--p~~~~~~~~- 298 (461)
-+ .++.+++....+..++ .+.+++++.++....+|. ..|.+.++ ++..+|.|++|+|.. |+.+..+..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 01 1556777788888776 577888888888733233 45665443 467899999999966 666555432
Q ss_pred ccc-CCCcEEeCCCCCC---CCCCEEEeCcccc
Q 012545 299 VAE-NKGGIETDDFFKT---SADDVYAVGDVAT 327 (461)
Q Consensus 299 ~~~-~~g~i~vd~~~~t---~~~~vya~GD~~~ 327 (461)
+.. ....+..-++-.. ..+.|.++|--.+
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 222 3333433333322 4578888885443
No 366
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.68 E-value=0.00011 Score=75.22 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.+...+.+++.||++++++.+.. ..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~ 220 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI 220 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence 3578999999999999999999999999999988765211 13556666667788999999999876532 10
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.. +.....+|.||+|+|..
T Consensus 221 ---------~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 221 ---------TA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred ---------CH-HHHHhhCCEEEEecCCC
Confidence 00 11134789999999987
No 367
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.68 E-value=0.00011 Score=81.34 Aligned_cols=93 Identities=24% Similarity=0.230 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEec
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 261 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 261 (461)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+.++.+...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence 57899999999999999999999999999998765421 1 13567788888889999999999865411
Q ss_pred CCCCEEEEEeCCCc-EEecCEEEEccCCC-CCh
Q 012545 262 ADGEVKEVKLKDGR-TLEADIVVVGVGGR-PLI 292 (461)
Q Consensus 262 ~~g~~~~v~~~~G~-~i~aD~vi~a~G~~-p~~ 292 (461)
.+++.+-. ...+|.||+|+|.. |..
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 11111111 24589999999974 543
No 368
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.67 E-value=0.00061 Score=67.60 Aligned_cols=99 Identities=14% Similarity=0.276 Sum_probs=72.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCC----ccCC--c--cc---------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--R--LF--------------------------------- 230 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~----~~~~--~--~~--------------------------------- 230 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.. + .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999752 1000 0 00
Q ss_pred --------------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 231 --------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 231 --------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
-.++.+.+.+.+.+.+ ++++.+++++++..++++ ..+.++++ ++.+|+||-|-|.+
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 0122344455555554 889999999999874443 45778776 89999999999987
Q ss_pred CChh
Q 012545 290 PLIS 293 (461)
Q Consensus 290 p~~~ 293 (461)
....
T Consensus 160 S~vR 163 (374)
T PRK06617 160 SKVR 163 (374)
T ss_pred chhH
Confidence 6553
No 369
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.67 E-value=0.00013 Score=77.55 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--------cccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 368999999999999999999999999999998876421 114667777777888999999999987632
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+ +.+.+ ....+|.|++|+|..+.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 0 11111 13468999999997643
No 370
>PRK10015 oxidoreductase; Provisional
Probab=97.67 E-value=0.00066 Score=68.59 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=72.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC------------------Ccc-----------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL----------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~------------------~~~----------------------- 229 (461)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 479999999999999999999999999998764321 000
Q ss_pred ----c----------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 230 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 230 ----~----------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+ ...+-+++.+.+++.|++++.+++|+++.. +++.+..+.. ++.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 001123456667788999999999999876 3455545554 44589999999999975
Q ss_pred C
Q 012545 290 P 290 (461)
Q Consensus 290 p 290 (461)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 371
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.66 E-value=0.0007 Score=67.98 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC-CccC------Cc--ccCH----------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM------PR--LFTA---------------------------- 232 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~------~~--~~~~---------------------------- 232 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++. +... .+ .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999985 1100 00 0000
Q ss_pred ----------------------------HHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEE
Q 012545 233 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 283 (461)
Q Consensus 233 ----------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi 283 (461)
.+.+.+.+.+.+ .|++++.++++++++.++++ ..|++++|+++.||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 112233333444 47999999999999863333 46888999999999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
.|-|.....
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999976544
No 372
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.65 E-value=0.00071 Score=70.59 Aligned_cols=101 Identities=25% Similarity=0.323 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 457999999999999999999999999999987532110
Q ss_pred ---ccC-----------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEEE
Q 012545 229 ---LFT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVV 283 (461)
Q Consensus 229 ---~~~-----------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~vi 283 (461)
.++ +.+.+.+.+.+.+ .|+++++++++++++.++++ ..++++ +| +++.+|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence 000 0122334444544 48999999999999985555 345554 56 479999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
-|-|.+...
T Consensus 168 gADG~~S~v 176 (538)
T PRK06183 168 GCDGANSFV 176 (538)
T ss_pred ecCCCchhH
Confidence 999976544
No 373
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.64 E-value=0.00069 Score=70.83 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----------------------------------c------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------~------ 229 (461)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 457999999999999999999999999999887532110 0
Q ss_pred -------------------c-CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCc-EEecCEEEEccC
Q 012545 230 -------------------F-TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVG 287 (461)
Q Consensus 230 -------------------~-~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~-~i~aD~vi~a~G 287 (461)
+ ...+.+.+.+.+++. ++++++++++++++.++++....++..+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 001223344555554 799999999999987544433334444564 699999999999
Q ss_pred CCCCh
Q 012545 288 GRPLI 292 (461)
Q Consensus 288 ~~p~~ 292 (461)
.+...
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 87654
No 374
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.64 E-value=0.00012 Score=73.54 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|+.||++++.+..... .++.++.+...+.|++.|++|+.+.++-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 3689999999999999999999999999999988765321 14668888999999999999999877531
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.+++++= .-+.|.|++++|.
T Consensus 199 -------~it~~~L-~~e~Dav~l~~G~ 218 (457)
T COG0493 199 -------DITLEEL-LKEYDAVFLATGA 218 (457)
T ss_pred -------cCCHHHH-HHhhCEEEEeccc
Confidence 1111111 2234999999994
No 375
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00026 Score=71.87 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=57.3
Q ss_pred CcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 214 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 214 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
..-.+..+.+-.+. +..+.+.++...++.|..++.++.|+++... ++...+|.+.-| .+++..||-|+|+...
T Consensus 172 v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred heeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHHH
Confidence 33455566555443 4567889999999999999999999999874 444458999998 7999999999998653
No 376
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.63 E-value=0.00029 Score=65.47 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCcEEEEccCCccCCcccCHHHHHHHHHHHHhc------CcEEEcCCcEEEEEecCCCCEEEEEeC--CC--cEEecCEE
Q 012545 213 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIV 282 (461)
Q Consensus 213 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~------GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G--~~i~aD~v 282 (461)
|+.|---+|+.+.+|. .-++.+.+...+++. -+++.++++|+.|.. .+|++.+|+.- +| ..+.+|.|
T Consensus 122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V 198 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV 198 (477)
T ss_pred CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence 4555445577777776 456667776666653 378899999999995 67888777764 34 35788999
Q ss_pred EEccCC
Q 012545 283 VVGVGG 288 (461)
Q Consensus 283 i~a~G~ 288 (461)
|+|+|-
T Consensus 199 VlatGG 204 (477)
T KOG2404|consen 199 VLATGG 204 (477)
T ss_pred EEecCC
Confidence 999984
No 377
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=6.8e-05 Score=74.57 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=33.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 44 (461)
++|+|+|||.|||+||.+|+++|+. |+|+|.++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCccC
Confidence 4899999999999999999999997 99999998744
No 378
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.62 E-value=0.00089 Score=67.09 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc------------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------ 228 (461)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999987542100
Q ss_pred -cc-----C---------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEe---CCCcEEecCEEE
Q 012545 229 -LF-----T---------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 283 (461)
Q Consensus 229 -~~-----~---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~~i~aD~vi 283 (461)
.+ + .++.+.+.+.+.+ .|+++++++++++++.++++ ..+++ .+++++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 00 0 1122334444444 47999999999999874333 34444 344679999999
Q ss_pred EccCCCCCh
Q 012545 284 VGVGGRPLI 292 (461)
Q Consensus 284 ~a~G~~p~~ 292 (461)
-|-|.+...
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999976544
No 379
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.61 E-value=0.00085 Score=69.32 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC------------------Cc--cc---------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PR--LF--------------------- 230 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~------------------~~--~~--------------------- 230 (461)
.|+|||+|..|+++|..+++.|.+|.++++..... .. .+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998753110 00 00
Q ss_pred ------------CH-HHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 ------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ------------~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
|. .+.+.+.+.+++. |++++.+ .++++..++++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 00 1123455556665 7888754 6777765346778899999999999999999999763
No 380
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.60 E-value=0.00017 Score=76.66 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. ..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 35789999999999999999999999999999887641 11 1356666777788889999999887541 11
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
+.+++. ...+|.||+|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 112221 2358999999998753
No 381
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.57 E-value=0.00029 Score=74.28 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHh-HHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE-WYK 83 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (461)
..+++|||||+.|+..|..|++.|.+ |+++|+.+... + .+. ..+ ...... +++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll---~-----~~d----~ei-----------s~~l~~~ll~ 365 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLL---P-----LLD----ADV-----------AKYFERVFLK 365 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccc---c-----cCC----HHH-----------HHHHHHHHhh
Confidence 36899999999999999999998875 99999986421 0 000 000 012223 235
Q ss_pred HcCcEEEcCCeEEEEeCCC--CEEE--cC-------CC--------cEEecCEEEEccCCCccc
Q 012545 84 EKGIELILSTEIVRADIAS--KTLL--SA-------TG--------LIFKYQILVIATGSTVSI 128 (461)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~--~~v~--~~-------~~--------~~~~~d~liiAtG~~~~~ 128 (461)
+.||+++.++.|.+++... +.+. +. ++ +++++|.+++|+|.+|+.
T Consensus 366 ~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 366 SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 6899999999999987543 2232 21 11 269999999999999954
No 382
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.56 E-value=0.0012 Score=65.87 Aligned_cols=100 Identities=30% Similarity=0.314 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------------------------------c--
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------------L-- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------------------------~-- 229 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 347999999999999999999999999999987432100 0
Q ss_pred -------c---------------CHHHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 230 -------F---------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 230 -------~---------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
+ ...+.+.+.+.+.+.+ +. +.+++|++++.++++ ..+++++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 0 0122334445555554 55 778999999863333 45788889899999999999
Q ss_pred CCCCCh
Q 012545 287 GGRPLI 292 (461)
Q Consensus 287 G~~p~~ 292 (461)
|.....
T Consensus 164 G~~S~v 169 (388)
T PRK07494 164 GRNSPV 169 (388)
T ss_pred CCCchh
Confidence 987643
No 383
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.55 E-value=0.00023 Score=75.85 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=67.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC-------Cc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46799999999999999999999999999999876532 11 13566666667888899999999886521
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+ +.+.+ ....+|.|++|+|..+
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1236899999999654
No 384
>PRK06185 hypothetical protein; Provisional
Probab=97.55 E-value=0.0012 Score=66.38 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc----cc-----------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF----------------------------------- 230 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----~~----------------------------------- 230 (461)
...|+|||+|++|+-+|..|++.|.+|+++++.+..... .+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 457999999999999999999999999999986431000 00
Q ss_pred ---------------------CHHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEE--eCCCc-EEecCEEEEc
Q 012545 231 ---------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR-TLEADIVVVG 285 (461)
Q Consensus 231 ---------------------~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~--~~~G~-~i~aD~vi~a 285 (461)
...+.+.+.+.+++ .|++++.+++++++..+ ++.+..+. +.+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 01223344444444 48999999999999873 44443343 45664 7999999999
Q ss_pred cCCCCC
Q 012545 286 VGGRPL 291 (461)
Q Consensus 286 ~G~~p~ 291 (461)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 997654
No 385
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.55 E-value=0.00059 Score=68.75 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=69.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCccCCcc----cCH-------------HH-------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------DI------------------- 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~~----~~~-------------~~------------------- 234 (461)
+|+|||+|..|+-+|..|++.| .+|+++++.+.+.... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 5999999876532100 000 00
Q ss_pred ----------------------HHHHHHHHHhc--CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 235 ----------------------AAFYEGYYANK--GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 235 ----------------------~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+.+.|.+. .+.++++++|++++.++++ ..+.+++|+++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 01112222211 4567889999999874443 578889999999999999999765
Q ss_pred Ch
Q 012545 291 LI 292 (461)
Q Consensus 291 ~~ 292 (461)
..
T Consensus 160 ~v 161 (414)
T TIGR03219 160 AL 161 (414)
T ss_pred HH
Confidence 43
No 386
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.54 E-value=0.00094 Score=74.44 Aligned_cols=102 Identities=24% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc----------cCHHHHHHHHHHHHhc-CcEEEcCCcEEEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANK-GIKIIKGTVAVGF 258 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~----------~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i 258 (461)
...|+|||+|+.|+.+|..+++.|.+|++++..+.+.... -..++...+.+.+++. +++++.+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 4689999999999999999999999999999876543211 1123334455556655 5999999999887
Q ss_pred EecCCCCEEEEEe-C-------CC------cEEecCEEEEccCCCCChh
Q 012545 259 TTNADGEVKEVKL-K-------DG------RTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 259 ~~~~~g~~~~v~~-~-------~G------~~i~aD~vi~a~G~~p~~~ 293 (461)
.. ++.+..+.. . ++ .++.+|.||+|||.+|...
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 53 222211210 0 11 2689999999999877543
No 387
>PLN02546 glutathione reductase
Probab=97.53 E-value=0.00045 Score=71.76 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
..+++|||||+.|+..|..|++.|.+ |+|+++.+... +. + . .. ......+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il---~~-----~-d---~~-----------~~~~l~~~L~~ 305 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVL---RG-----F-D---EE-----------VRDFVAEQMSL 305 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeccccc---cc-----c-C---HH-----------HHHHHHHHHHH
Confidence 47899999999999999999998865 99999875311 00 0 0 00 01234566778
Q ss_pred cCcEEEcCCeEEEEeCC-CCE--EEcCCCcEEecCEEEEccCCCccc
Q 012545 85 KGIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVSI 128 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~liiAtG~~~~~ 128 (461)
.||+++.++.+.++... ... +.+.+++...+|.+++|+|.+|+.
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 99999999999888642 222 333444444589999999999853
No 388
>PLN02985 squalene monooxygenase
Probab=97.51 E-value=0.00011 Score=75.60 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..+||+|||||++|+++|..|++.|++ |+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence 468999999999999999999999987 999999753
No 389
>PRK09897 hypothetical protein; Provisional
Probab=97.51 E-value=0.0016 Score=67.07 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccCCccCCcc---------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL--------------------------------------- 229 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~--------------------------------------- 229 (461)
++|+|||+|+.|+-+|..|.+.+ .+|+++++++.+..+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998764 4799998864332110
Q ss_pred --------------------cCHHHHHH---HHHHHHhcC--cEEEcCCcEEEEEecCCCCEEEEEeCC-CcEEecCEEE
Q 012545 230 --------------------FTADIAAF---YEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVV 283 (461)
Q Consensus 230 --------------------~~~~~~~~---~~~~l~~~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~-G~~i~aD~vi 283 (461)
++..+.+. +.+.+.+.| +.++.+++|+++...+++ ..+++.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 00011111 223334455 788888899999874333 4577655 4689999999
Q ss_pred EccCCCCC
Q 012545 284 VGVGGRPL 291 (461)
Q Consensus 284 ~a~G~~p~ 291 (461)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99997543
No 390
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.51 E-value=0.00012 Score=72.32 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+|||||++|+.||..|++.|++ |+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence 5999999999999999999999988 999997653
No 391
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.50 E-value=0.00037 Score=70.04 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=61.7
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HHCCCcEEEEccCCccCCcc---c------CHHHHHHHHHHHHhcCcEEEcCCcEEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMPRL---F------TADIAAFYEGYYANKGIKIIKGTVAVGF 258 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l-~~~g~~Vtli~~~~~~~~~~---~------~~~~~~~~~~~l~~~GV~v~~~~~v~~i 258 (461)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+..-. . -..+.+.+.+.+...+++++.+..+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 468999999999999999965 56799999999998764310 0 124445555556667888875433211
Q ss_pred EecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 259 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 259 ~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+..++ -.-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 111111 12368999999997753
No 392
>PRK02106 choline dehydrogenase; Validated
Probab=97.48 E-value=0.00012 Score=76.53 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=35.8
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV 42 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~-~g~~~~~V~vie~~~~ 42 (461)
||...+|+||||||+||+.+|.+|++ .|++ |+|||+++.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCCCc
Confidence 78889999999999999999999999 6776 999999964
No 393
>PLN02268 probable polyamine oxidase
Probab=97.47 E-value=0.00013 Score=73.96 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.3
Q ss_pred CcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 246 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 246 GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
+++++++++|++|...+++ ..|++.+|+++.+|.||+|+..
T Consensus 210 ~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG--VKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCc--EEEEECCCcEEEcCEEEEecCH
Confidence 6789999999999985444 4688889988999999999863
No 394
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.47 E-value=0.00013 Score=76.23 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|...+||||||+|.|||+||.++++.|.+ |+|+||.+
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 44689999999999999999999999987 99999987
No 395
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.47 E-value=6.2e-05 Score=73.86 Aligned_cols=91 Identities=27% Similarity=0.503 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEe---C--CCcEEecCEEEEccCCCCChhhh-hccccc--CC
Q 012545 233 DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL---K--DGRTLEADIVVVGVGGRPLISLF-KGQVAE--NK 303 (461)
Q Consensus 233 ~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~---~--~G~~i~aD~vi~a~G~~p~~~~~-~~~~~~--~~ 303 (461)
.+.+.+.+.+++. |++++++++|++|+..+++. ..|.. . +..++.++.|++..|-.. ..++ +.++.. .-
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gy 259 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGY 259 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhccc
Confidence 3444555556665 99999999999999866663 23433 2 235799999999999764 3455 445543 44
Q ss_pred CcEEeC-CCCCCCCC--------CEEEeCcc
Q 012545 304 GGIETD-DFFKTSAD--------DVYAVGDV 325 (461)
Q Consensus 304 g~i~vd-~~~~t~~~--------~vya~GD~ 325 (461)
|+..|. .+++++.| -||..-.+
T Consensus 260 ggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 260 GGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred CCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 556665 66777544 35665554
No 396
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.47 E-value=0.00098 Score=65.92 Aligned_cols=94 Identities=22% Similarity=0.285 Sum_probs=64.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCc--------ccCHHHHH-------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR--------LFTADIAA------------------------- 236 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~--------~~~~~~~~------------------------- 236 (461)
.|+|||+|..|+.+|..|.+. |.+|.++++.+.+.+. .+++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 378999999999999999987 9999999987643221 01111100
Q ss_pred ---------HHHHH-HHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 237 ---------FYEGY-YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 237 ---------~~~~~-l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
.+.+. +++.+..++.+.+|+++.. ++ |++.+|+++.||.||.|.|.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence 11111 2333444777888888843 32 55688999999999999998764
No 397
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.46 E-value=0.00013 Score=73.72 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------------------------------------
Q 012545 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------- 228 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------------------------------------------- 228 (461)
|+|||||+.|+-+|..+++.|.+|.|+++.+.+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 799999999999999999999999999998654210
Q ss_pred ----ccCHHH-HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC---CcEEecCEEEEccCC
Q 012545 229 ----LFTADI-AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GRTLEADIVVVGVGG 288 (461)
Q Consensus 229 ----~~~~~~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---G~~i~aD~vi~a~G~ 288 (461)
.++++. ...+.+.+++.|+++++++.+.++.. +++++.+|++.+ ..++.|+.+|=|+|.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 011111 22345666778999999999999987 466788888865 467999999999994
No 398
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.45 E-value=0.00016 Score=71.10 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+||+|||||++|+++|..|++.|.+ |+|+|+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 5999999999999999999998876 999999764
No 399
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.45 E-value=0.002 Score=64.34 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC---CCcEEEEccCC-c--cCCc--------------------cc--------------
Q 012545 191 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEP-W--CMPR--------------------LF-------------- 230 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~---g~~Vtli~~~~-~--~~~~--------------------~~-------------- 230 (461)
-+|+|||+|+.|+-+|..|++. |.+|+++++.. . ..+. ..
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 99999999841 1 0000 00
Q ss_pred ------------C---------------HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEE
Q 012545 231 ------------T---------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 282 (461)
Q Consensus 231 ------------~---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~v 282 (461)
. .++.+.+.+.+.+ .|++++.+++++++..++++ ..+++++|.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0 0112234444444 47999999999999763333 4578888888999999
Q ss_pred EEccCCCCCh
Q 012545 283 VVGVGGRPLI 292 (461)
Q Consensus 283 i~a~G~~p~~ 292 (461)
|.|.|.....
T Consensus 162 I~AdG~~S~v 171 (395)
T PRK05732 162 VAADGSHSAL 171 (395)
T ss_pred EEecCCChhh
Confidence 9999987643
No 400
>PLN02576 protoporphyrinogen oxidase
Probab=97.44 E-value=0.00016 Score=74.60 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc-CCCCCcEEEEeCCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAP 44 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~ 44 (461)
..+||+|||||++||+||..|.+. |++ |+|+|+++...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCCCC
Confidence 357999999999999999999998 886 99999997643
No 401
>PTZ00367 squalene epoxidase; Provisional
Probab=97.43 E-value=0.00014 Score=75.49 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..+||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence 468999999999999999999999987 99999975
No 402
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.42 E-value=0.00016 Score=75.87 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
+.++|+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 458999999999999999999999987 99999975
No 403
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.41 E-value=0.002 Score=63.83 Aligned_cols=96 Identities=28% Similarity=0.336 Sum_probs=71.2
Q ss_pred EEEECCCHHHHHHHHHH--HHCCCcEEEEccCCcc--CCcc----c----------------------------------
Q 012545 193 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPRL----F---------------------------------- 230 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l--~~~g~~Vtli~~~~~~--~~~~----~---------------------------------- 230 (461)
|+|||+|+.|+-+|..| .+.|.+|.++++.+.. -... .
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7789999999876543 1100 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 231 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 231 ----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
...+.+.+.+.+.+.| .++.+++|++++.+++ ...+++++|+++.|+.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 0133445566666444 5667889999987433 45788999999999999999996554
No 404
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.41 E-value=0.002 Score=65.29 Aligned_cols=102 Identities=23% Similarity=0.339 Sum_probs=74.0
Q ss_pred cEEEECCCHHHHHHHHHHHH----CCCcEEEEccCC--ccC------------Cc-------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PR------------------------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~----~g~~Vtli~~~~--~~~------------~~------------------------- 228 (461)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... .+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 799999999832 210 00
Q ss_pred ------------------ccC--------------HHHHHHHHHHHHhcC---cEEEcCCcEEEEEec-----CCCCEEE
Q 012545 229 ------------------LFT--------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVKE 268 (461)
Q Consensus 229 ------------------~~~--------------~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~-----~~g~~~~ 268 (461)
.++ ..+.+.+.+.+++.+ +++++++++++++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 000 112334455566654 999999999999742 1233357
Q ss_pred EEeCCCcEEecCEEEEccCCCCChh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~ 293 (461)
|++.+|+++.+|+||-|-|......
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 8889999999999999999876553
No 405
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.39 E-value=0.00093 Score=68.66 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=59.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++|+|||+|.+|+++|..|+++|++ |+++|+.+... .....+.+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~ 62 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA 62 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence 46899999999999999999999986 99999764200 0122455677
Q ss_pred cCcEEEcCCeEEEEeCCCCEEEcCCCcEEecCEEEEccCCCcccccccc
Q 012545 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVSITSLTS 133 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~~~g 133 (461)
.|++++.+..+. ....+|.+|+++|..|..|.+..
T Consensus 63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHHHHH
Confidence 899988875332 12468999999999986554333
No 406
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00034 Score=68.33 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..|||||||||.||..||...+|.|.+ -+|+..+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence 368999999999999999999999987 57777753
No 407
>PRK06996 hypothetical protein; Provisional
Probab=97.37 E-value=0.0023 Score=64.08 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEccCCccCCc-------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMPR------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g----~~Vtli~~~~~~~~~------------------------------------- 228 (461)
...|+|||+|+.|+-+|..|++.| .+|+++++.+..-..
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 457999999999999999999986 469999986321000
Q ss_pred -c-------------------c-CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC---cEEecCEEEE
Q 012545 229 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVV 284 (461)
Q Consensus 229 -~-------------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G---~~i~aD~vi~ 284 (461)
. . -..+.+.+.+.+++.|++++.++++++++.++++ ..+++.+| +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 0 0 0244566777788889999999999999774444 45667654 6899999999
Q ss_pred ccCCC
Q 012545 285 GVGGR 289 (461)
Q Consensus 285 a~G~~ 289 (461)
|-|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99964
No 408
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.36 E-value=0.0028 Score=54.42 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=32.2
Q ss_pred CcEEE-cCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 246 GIKII-KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 246 GV~v~-~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
|+++. ...+|+++...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 54443 35688999885555 5788899999999999999995
No 409
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.36 E-value=0.00015 Score=69.44 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEec-CCCCEEEEEeCC--Cc----EEecCEEEEccCCCCChhhh-hccc
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKD--GR----TLEADIVVVGVGGRPLISLF-KGQV 299 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~~~--G~----~i~aD~vi~a~G~~p~~~~~-~~~~ 299 (461)
....++...++..+++++++++|++|..+ +++++..|+..+ +. .+.++.||+|.|.--...++ .+++
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 34556666666669999999999999652 466677776643 33 46789999999954444433 4443
No 410
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.36 E-value=0.00099 Score=64.45 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-c---------CHHHHHHHHHHHHhc--CcEEEcCCcEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANK--GIKIIKGTVAV 256 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-~---------~~~~~~~~~~~l~~~--GV~v~~~~~v~ 256 (461)
+.++|+|+|+|+.|+.++..|-..-.+|+++.+.++++-.. + -..+.+-+....++. +++++ .++..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence 46899999999999999999988889999999988764321 1 345667776666655 45544 55666
Q ss_pred EEEecCCCCEEE--EEeCCC----cEEecCEEEEccCCCCChh
Q 012545 257 GFTTNADGEVKE--VKLKDG----RTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 257 ~i~~~~~g~~~~--v~~~~G----~~i~aD~vi~a~G~~p~~~ 293 (461)
.++. +.+.+. ..++++ ..+.+|.+|+|+|..||+.
T Consensus 133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 7765 333223 233445 4689999999999998875
No 411
>PRK13984 putative oxidoreductase; Provisional
Probab=97.35 E-value=0.00053 Score=72.56 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=67.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
+.++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .++.++.....+.+++.|++++.++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 467899999999999999999999999999988775421 1 134555566667889999999999776320
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+.+++ ....+|.||+|+|..+
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999753
No 412
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0016 Score=57.44 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=73.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEc--------------------cCCccCCcccCHHHHHHHHHHHHhcCcEE
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVY--------------------PEPWCMPRLFTADIAAFYEGYYANKGIKI 249 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~GV~v 249 (461)
..+|+|||+|+.+.-.|-.+++...+-.+++ .-|.+-.....+++.+.+++...+.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4589999999999999988888655544433 22333334467899999999999999999
Q ss_pred EcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCCh
Q 012545 250 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 250 ~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~ 292 (461)
+++ .|.++.. ..+...+.+ |.+.+.||.||+|+|.....
T Consensus 88 ~tE-tVskv~~--sskpF~l~t-d~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITE-TVSKVDL--SSKPFKLWT-DARPVTADAVILATGASAKR 126 (322)
T ss_pred eee-ehhhccc--cCCCeEEEe-cCCceeeeeEEEecccceee
Confidence 865 5677765 444455655 44589999999999976543
No 413
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.32 E-value=0.0036 Score=62.55 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--Cc----------------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR---------------------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~~---------------------------------------- 228 (461)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... ..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 469999999999999999999999999999876310 00
Q ss_pred ----cc-------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEe-cCCCCEEEEEe-CCCc--EEecCEEEEccC
Q 012545 229 ----LF-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKL-KDGR--TLEADIVVVGVG 287 (461)
Q Consensus 229 ----~~-------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~~~~v~~-~~G~--~i~aD~vi~a~G 287 (461)
.+ -..+.+.+.+...+.|+++++++++++++. ++++ ..|++ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 00 012223344445668999999999999875 2232 34555 4664 689999999999
Q ss_pred CCCCh
Q 012545 288 GRPLI 292 (461)
Q Consensus 288 ~~p~~ 292 (461)
.+..+
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 77654
No 414
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.31 E-value=0.0003 Score=68.97 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=33.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
...+|||||||.|||+||..|.++|+.+ |+|+|.....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dRI 57 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDRI 57 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEecccc
Confidence 4578999999999999999999888775 9999999764
No 415
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.31 E-value=0.00027 Score=72.33 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 233 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 233 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.+.+.+.+.+++ ++++++++|++|+.++++ ..|++.+|+++.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence 455555555544 579999999999974433 467788888899999999986
No 416
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.30 E-value=0.00074 Score=67.18 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=62.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCccc-CHH-----------------HHHHHHHHHHhcCcEEEcCC
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF-TAD-----------------IAAFYEGYYANKGIKIIKGT 253 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~-~~~-----------------~~~~~~~~l~~~GV~v~~~~ 253 (461)
+|+|||+|..|+|+|..|++.|.+|+++++.+....... ... ....+.+.++..|..+...+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a 81 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA 81 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence 689999999999999999999999999997766433210 000 11234566666665555444
Q ss_pred cEEEEEecCCCCEE------------------EEEeCCC--cEE-ecCEEEEccCCCCChhhhh
Q 012545 254 VAVGFTTNADGEVK------------------EVKLKDG--RTL-EADIVVVGVGGRPLISLFK 296 (461)
Q Consensus 254 ~v~~i~~~~~g~~~------------------~v~~~~G--~~i-~aD~vi~a~G~~p~~~~~~ 296 (461)
..+.+.. .+... .+...++ ..+ ..|.||+|||..++..+.+
T Consensus 82 d~~~Ipa--gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~ 143 (433)
T TIGR00137 82 DRHAVPA--GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSE 143 (433)
T ss_pred hhhCCCC--CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHH
Confidence 4444321 11100 0111111 123 3579999999988877653
No 417
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00057 Score=72.96 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC-------c-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEe
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 260 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 260 (461)
.+++|+|||+|+.|+-+|..|.+.|+.|++.+|++++.. . -+|..+.++-.+.|.+.||+|++|+++-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 578999999999999999999999999999999998632 1 157778888889999999999998765321
Q ss_pred cCCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 261 NADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 261 ~~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
+. -|+-.-+.|.||+|+|..
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCC
Confidence 11 133334668899999953
No 418
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.29 E-value=0.0036 Score=62.49 Aligned_cols=98 Identities=18% Similarity=0.336 Sum_probs=68.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccC-CccC-----------C---------------------c----------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM-----------P---------------------R---------- 228 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~-----------~---------------------~---------- 228 (461)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... . .
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 4899999999999999999999999999886 2110 0 0
Q ss_pred ---c---cCH-HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC------C--cEEecCEEEEccCCCCCh
Q 012545 229 ---L---FTA-DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G--RTLEADIVVVGVGGRPLI 292 (461)
Q Consensus 229 ---~---~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~------G--~~i~aD~vi~a~G~~p~~ 292 (461)
+ ++. .+-+.+.+.+.+.|++++.+ .++++..++++ ..+++.+ | .++.+|.||.|.|.+...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 010 12234556667789999765 68888764333 3455442 2 479999999999976543
No 419
>PRK07538 hypothetical protein; Provisional
Probab=97.28 E-value=0.0035 Score=63.09 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=68.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-----------------cC-----------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FT----------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-----------------~~----------------------- 231 (461)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.. +.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 58999999999999999999999999999875421100 00
Q ss_pred --------------------HHHHHHHHHHHHh-cC-cEEEcCCcEEEEEecCCCCEEEEEeCCC-----cEEecCEEEE
Q 012545 232 --------------------ADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVV 284 (461)
Q Consensus 232 --------------------~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~G-----~~i~aD~vi~ 284 (461)
..+.+.+.+.+.+ .| +++++++++++++.++++.+ +.+.++ +++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 0112223333333 36 46999999999987555533 334332 4899999999
Q ss_pred ccCCCCCh
Q 012545 285 GVGGRPLI 292 (461)
Q Consensus 285 a~G~~p~~ 292 (461)
|-|.+...
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99976544
No 420
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.27 E-value=0.00076 Score=70.71 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------ccCHHHHHHHHHHHHhcCcEEEcCCcE-EEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVA-VGFT 259 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v-~~i~ 259 (461)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+... .++.+..+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 5789999999999999999999999999999987654211 134455555566778899999988765 3321
Q ss_pred ecCCCCEEEEEeCCCcEEecCEEEEccCCCCC
Q 012545 260 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 291 (461)
Q Consensus 260 ~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~ 291 (461)
. +. + ...+|.||+|+|..+.
T Consensus 216 ~--~~------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L--EQ------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred H--HH------H----HhhCCEEEEeeCCCCC
Confidence 1 00 0 1247999999997653
No 421
>PRK11445 putative oxidoreductase; Provisional
Probab=97.25 E-value=0.0049 Score=60.60 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=67.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--------CcccCH-------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA------------------------------- 232 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~~~~~~------------------------------- 232 (461)
.|+|||+|+.|+-+|..|++. .+|+++++.+... ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999876321 000000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe-CCCc--EEecCEEEEccCCCCC
Q 012545 233 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 233 ------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~G~--~i~aD~vi~a~G~~p~ 291 (461)
++.+.+.+ ..+.|++++.++.+++++.++++ ..+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 00111222 23468999999999999874444 34554 5664 6899999999998654
Q ss_pred h
Q 012545 292 I 292 (461)
Q Consensus 292 ~ 292 (461)
.
T Consensus 159 v 159 (351)
T PRK11445 159 V 159 (351)
T ss_pred H
Confidence 4
No 422
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.22 E-value=0.00061 Score=64.89 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcccccccCCCCCCCCCCceeecCCCCCCCCHhHHHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
.++.+|||+|..||..+.-..++|-. ||++|-.+...-. +.. +....+...+.+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~--------mD~---------------Eisk~~qr~L~k 264 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGV--------MDG---------------EISKAFQRVLQK 264 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccc--------cCH---------------HHHHHHHHHHHh
Confidence 57899999999999999999999876 9999987642210 000 012345677888
Q ss_pred cCcEEEcCCeEEEEeCCCC-E--EEcC---CC--cEEecCEEEEccCCCcc
Q 012545 85 KGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVS 127 (461)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~liiAtG~~~~ 127 (461)
++++|.++++|...++... . +.+. ++ +++++|.+++++|.+|+
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 9999999999999987664 3 3332 22 47899999999999994
No 423
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.22 E-value=0.00035 Score=73.81 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecC-CCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
+..+...+.+..++.|++++.+++|+++..++ ++.+..|+. .+++ ++.+|.||+|+|...
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56778888899999999999999999998743 466666654 2343 689999999999653
No 424
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.21 E-value=0.00037 Score=72.12 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||+| ||++||.++++.|.+ |+||||.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLS---VALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCc---EEEEecCCC
Confidence 6899999999 999999999999987 999999865
No 425
>PRK06126 hypothetical protein; Provisional
Probab=97.19 E-value=0.0056 Score=64.01 Aligned_cols=100 Identities=24% Similarity=0.322 Sum_probs=69.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc--------------------------c--------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------L-------------- 229 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------------~-------------- 229 (461)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 457999999999999999999999999999877431100 0
Q ss_pred ----------c--------------------------C-HHHHHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEe
Q 012545 230 ----------F--------------------------T-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL 271 (461)
Q Consensus 230 ----------~--------------------------~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~ 271 (461)
+ + ..+.+.+.+.+++ .|+++++++++++++.++++. .+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v--~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGV--TATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeE--EEEE
Confidence 0 0 0012233344444 489999999999998744442 2333
Q ss_pred ---CCCc--EEecCEEEEccCCCCC
Q 012545 272 ---KDGR--TLEADIVVVGVGGRPL 291 (461)
Q Consensus 272 ---~~G~--~i~aD~vi~a~G~~p~ 291 (461)
.+|+ ++.+|.||.|.|.+..
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchH
Confidence 3464 6899999999997543
No 426
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.12 E-value=0.00055 Score=68.05 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.||+|||||++|+.||..|+++|++ |+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence 3899999999999999999999987 999998754
No 427
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.12 E-value=0.0057 Score=61.06 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccC--Cc----ccC---------------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----LFT--------------------------------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~~----~~~--------------------------------- 231 (461)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999876311 00 000
Q ss_pred --------------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC-CCc--EEecCEEEEccCC
Q 012545 232 --------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 232 --------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~G~--~i~aD~vi~a~G~ 288 (461)
..+.+.+.+.+.+.|+.++++.+++++...++.. ..|++. +|+ ++++|+||-|=|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 1112334455566788888888877775422222 356664 775 6899999999997
Q ss_pred CCCh
Q 012545 289 RPLI 292 (461)
Q Consensus 289 ~p~~ 292 (461)
+...
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 6644
No 428
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.08 E-value=0.0098 Score=59.51 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=66.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---cc---------------------------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL--------------------------------------- 229 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~~--------------------------------------- 229 (461)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.... ..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 589999999999999999999999999987643110 00
Q ss_pred --------cC-HHHHHHHHHHHHhcCcEEEcCCcEEEEEec-CCCCEEEEEe--CC-----C--cEEecCEEEEccCCCC
Q 012545 230 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKL--KD-----G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 230 --------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~--~~-----G--~~i~aD~vi~a~G~~p 290 (461)
++ ..+-+.+.+.+.+.|++++.++ ++++... ..+....|++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 0112235556677899998774 6666431 1222233442 22 3 4799999999999876
Q ss_pred Ch
Q 012545 291 LI 292 (461)
Q Consensus 291 ~~ 292 (461)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 44
No 429
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.07 E-value=0.00065 Score=65.62 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
+.+|||||||++|+++|..|.++|++ |+|+|+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 46899999999999999999999998 999999764
No 430
>PLN02676 polyamine oxidase
Probab=97.07 E-value=0.00076 Score=69.18 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=33.9
Q ss_pred cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccC
Q 012545 247 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 287 (461)
Q Consensus 247 V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G 287 (461)
.+++++++|++|..++++ +.|++.+|+++.||.||++++
T Consensus 245 ~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvP 283 (487)
T PLN02676 245 PRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVS 283 (487)
T ss_pred CceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccC
Confidence 679999999999985454 578889999999999999987
No 431
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.07 E-value=0.0026 Score=58.05 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=69.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc-------------------cCHHH------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------FTADI------------------ 234 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------------~~~~~------------------ 234 (461)
+|+|||+|..|+.+|..|+..|.+|++++++..+..++ -++.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 58999999999999999999999999999874432210 01111
Q ss_pred ------------------------HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecCEEEEccCCC
Q 012545 235 ------------------------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGR 289 (461)
Q Consensus 235 ------------------------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD~vi~a~G~~ 289 (461)
...+.+.|.. ..+++++++|+++... +....+++++| +...+|.|++++..-
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt-dL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAP 159 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT-DLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAP 159 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHhc-cchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCC
Confidence 1122233322 4678888999999874 34467888666 467899999998753
Q ss_pred CChhhh
Q 012545 290 PLISLF 295 (461)
Q Consensus 290 p~~~~~ 295 (461)
....++
T Consensus 160 Q~~~LL 165 (331)
T COG3380 160 QTATLL 165 (331)
T ss_pred cchhhc
Confidence 333333
No 432
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.05 E-value=0.012 Score=57.12 Aligned_cols=120 Identities=22% Similarity=0.240 Sum_probs=79.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCcccccccCCCCCCCCCC-----------
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPALSKAYLFPEGTARLPG----------- 65 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------- 65 (461)
+.+||+|||||||||+||..+++.|.+ |+|+|+.+... -.||.............++|+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence 478999999999999999999999987 99999987621 112222111111111111110
Q ss_pred --------------ceeecCC--CC----------CCCCHhHHHHcCcEEEcCCeEEEEeCCC--CEEEcCCCcEEecCE
Q 012545 66 --------------FHVCVGS--GG----------ERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQI 117 (461)
Q Consensus 66 --------------~~~~~~~--~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~ 117 (461)
....... .. ...+...+++.||+++++++|.+++.+. ..+.+.+++++.+|.
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 0000000 00 1112334567899999999999998875 567888888899999
Q ss_pred EEEccCCCc
Q 012545 118 LVIATGSTV 126 (461)
Q Consensus 118 liiAtG~~~ 126 (461)
+|+|||...
T Consensus 159 lilAtGG~S 167 (408)
T COG2081 159 LILATGGKS 167 (408)
T ss_pred EEEecCCcC
Confidence 999999665
No 433
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.03 E-value=0.0015 Score=70.76 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 57899999999999999999999999999999753
No 434
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.02 E-value=0.0087 Score=62.46 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999864
No 435
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.02 E-value=0.00068 Score=73.50 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 012545 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (461)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~L~~~--g~~~~~V~vie~~~~ 42 (461)
++|+|||||+||+++|..|++. |++ |+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence 3899999999999999999998 666 999999875
No 436
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.99 E-value=0.00086 Score=70.03 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
.+||||||+|.+|++||.++++.|.+ |+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~---v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLE---PLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 68999999999999999999999987 999999864
No 437
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.0016 Score=65.07 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC------------------------------------------c
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------R 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------~ 228 (461)
-.|+|||+|-.|+|+|.+.+++|.++.++.....-+. .
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 4699999999999999999999999888765422100 0
Q ss_pred cc-----------CHH-HHHHHHHHHH-hcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCC
Q 012545 229 LF-----------TAD-IAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 288 (461)
Q Consensus 229 ~~-----------~~~-~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~ 288 (461)
.- |.. ..+.+++.++ ..++.++- ..|+++...++.++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 001 1223333333 24566653 356666653333689999999999999999999995
No 438
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.97 E-value=0.0014 Score=63.40 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=51.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-cccccccCCCCCCCCCCceeecCCCCCCCCHhHH
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
.++|+|+|||++||++|+.|++++. +..|+|+|..+... |-+. .....+++...+..+.... ..-....+++
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag-----~~g~~~l~lv 84 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAG-----PGGAETLDLV 84 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcccceeeeccCCCceeeccCCCccCcCC-----cchhHHHHHH
Confidence 5799999999999999999999875 56688899998753 3332 3345555555444432111 0011345666
Q ss_pred HHcCcE
Q 012545 83 KEKGIE 88 (461)
Q Consensus 83 ~~~~v~ 88 (461)
.+.|++
T Consensus 85 ~dLGl~ 90 (491)
T KOG1276|consen 85 SDLGLE 90 (491)
T ss_pred HHcCcc
Confidence 677764
No 439
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.96 E-value=0.0047 Score=64.01 Aligned_cols=102 Identities=24% Similarity=0.412 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEccCCcc------CCcccC-----HHHHHHHHHHHHhcCcEEEcCCcE
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC------MPRLFT-----ADIAAFYEGYYANKGIKIIKGTVA 255 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~------~~~~~~-----~~~~~~~~~~l~~~GV~v~~~~~v 255 (461)
..+++|||.|..|.-+...+.+. -..+|++...+++ ++..+. +++.-.-.++.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46799999999999888888773 4678888766553 111121 233333457889999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 256 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 256 ~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
..|.. +. ..|++++|.++.+|.+|+|||..|.....
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence 99976 33 46889999999999999999999876544
No 440
>PLN02529 lysine-specific histone demethylase 1
Probab=96.94 E-value=0.001 Score=70.79 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+||+|||||++|++||..|++.|++ |+|+|+.+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCccC
Confidence 358999999999999999999999987 9999998753
No 441
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.89 E-value=0.0012 Score=70.60 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=33.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
.++|+|||||++|++||..|.+.|++ |+|+|+....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r~ 273 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRARP 273 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeccccC
Confidence 57999999999999999999999987 9999999764
No 442
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.89 E-value=0.0024 Score=62.79 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=55.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcc------cCHH------HHHHHHHHHHhcCcEEEcCCcEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTAD------IAAFYEGYYANKGIKIIKGTVAV 256 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~------~~~~------~~~~~~~~l~~~GV~v~~~~~v~ 256 (461)
-.++++|||||..|+++|..|+..|.+|+++++.+.+..++ |+.. +.-.+.+....-+|++++.++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 46789999999999999999999999999999998865431 2221 12233444455689999999999
Q ss_pred EEEe
Q 012545 257 GFTT 260 (461)
Q Consensus 257 ~i~~ 260 (461)
++..
T Consensus 203 ev~G 206 (622)
T COG1148 203 EVSG 206 (622)
T ss_pred eecc
Confidence 9865
No 443
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0087 Score=56.48 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=79.1
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc-cCC-cc-----------CCcccCHHHHHHHHHHHHhcCcEEEcCCc
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVY-PEP-WC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTV 254 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~-~~~-~~-----------~~~~~~~~~~~~~~~~l~~~GV~v~~~~~ 254 (461)
+.+-.|+|||+|+.|...|-..++.|.+.-++. |-. .. .+..-.+++...+++..++..|.++...+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhh
Confidence 356689999999999999999888887654431 110 11 11224678899999999999999998888
Q ss_pred EEEEEec-CCCCEEEEEeCCCcEEecCEEEEccCCC
Q 012545 255 AVGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGR 289 (461)
Q Consensus 255 v~~i~~~-~~g~~~~v~~~~G~~i~aD~vi~a~G~~ 289 (461)
.+++++. ..+....|++.+|-.+++..+|++||.+
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 8888863 2355678999999999999999999954
No 444
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.82 E-value=0.014 Score=59.81 Aligned_cols=97 Identities=27% Similarity=0.372 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC--------------c----------------ccC---------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------LFT--------- 231 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------------~----------------~~~--------- 231 (461)
..|+|||+|..|+-+|..+++.|.+|.++++.+.... . ..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3689999999999999999999999999887532100 0 000
Q ss_pred --------------------------------------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCC
Q 012545 232 --------------------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 273 (461)
Q Consensus 232 --------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~ 273 (461)
..+.+.+.+.+++.||+++.+ .++.+.. +++++..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 123334455556677887765 6777765 3566666665 5
Q ss_pred CcEEecCEEEEccCCCC
Q 012545 274 GRTLEADIVVVGVGGRP 290 (461)
Q Consensus 274 G~~i~aD~vi~a~G~~p 290 (461)
+..+.++.||+|+|...
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 66899999999999644
No 445
>PRK08275 putative oxidoreductase; Provisional
Probab=96.82 E-value=0.019 Score=60.13 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCCC
Q 012545 235 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 235 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~p 290 (461)
.+.+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|+|...
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3455555677899999999999998743677777653 3564 478999999999653
No 446
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.77 E-value=0.0015 Score=67.33 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=41.7
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCC--CCEEEEEeC---CCc--EEecCEEEEccCCCCChhhh
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNAD--GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~--g~~~~v~~~---~G~--~i~aD~vi~a~G~~p~~~~~ 295 (461)
.+.+.++..+++++.++.|++|..+++ +++..|... +|+ ++.|+.||+|.|..-+..++
T Consensus 219 ~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 219 QPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 333344455699999999999987544 356666443 343 58999999999977666655
No 447
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.75 E-value=0.0017 Score=62.04 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
...||+|||||.+|-+.|..|+|.|.+ |.|||++-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcE---EEEEeccc
Confidence 358999999999999999999999987 99999984
No 448
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.72 E-value=0.027 Score=57.16 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=67.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---cc----------cC-------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL----------FT------------------------- 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~~----------~~------------------------- 231 (461)
.-.|+|||+|+.|.-+|..|++.|.+|.++++.+.... .. ++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 34799999999999999999999999999987642100 00 00
Q ss_pred ------------H-HHHHHHHHHHHhcCcEEEcCCcEEEEEecCC-CCEEEEEeCC-------C--cEEecCEEEEccCC
Q 012545 232 ------------A-DIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKD-------G--RTLEADIVVVGVGG 288 (461)
Q Consensus 232 ------------~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~-------G--~~i~aD~vi~a~G~ 288 (461)
. .+-+.+.+...+.|++++.+ .++++....+ +....|++.+ | .++.+|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 0 11234555567789999765 5777764211 1222344422 3 47999999999997
Q ss_pred CCCh
Q 012545 289 RPLI 292 (461)
Q Consensus 289 ~p~~ 292 (461)
....
T Consensus 198 ~S~v 201 (450)
T PLN00093 198 NSRV 201 (450)
T ss_pred chHH
Confidence 6543
No 449
>PLN02985 squalene monooxygenase
Probab=96.71 E-value=0.021 Score=59.00 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=67.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCc-----------------------------------------
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 228 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 228 (461)
..+|+|||+|..|+-+|..|++.|.+|+++++.+..-..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 457999999999999999999999999999986321000
Q ss_pred ----cc-----------------CHHHHHHHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEe--CCCcE--EecCEE
Q 012545 229 ----LF-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL--KDGRT--LEADIV 282 (461)
Q Consensus 229 ----~~-----------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~--~~G~~--i~aD~v 282 (461)
.+ ..++.+.+.+.+++. ||+++.+ +++++.. +++.+.+|++ .+|++ +.+|.|
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 00 012233444444444 6888755 5666654 3444445554 46654 569999
Q ss_pred EEccCCCCChh
Q 012545 283 VVGVGGRPLIS 293 (461)
Q Consensus 283 i~a~G~~p~~~ 293 (461)
|.|-|......
T Consensus 201 VgADG~~S~vR 211 (514)
T PLN02985 201 VVCDGCYSNLR 211 (514)
T ss_pred EECCCCchHHH
Confidence 99999876553
No 450
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.70 E-value=0.025 Score=59.47 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=37.6
Q ss_pred HHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 239 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 239 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
.+.+++.||+++.++.++++.. +++++.++.. .+|+ .+.++.||+|+|..
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 3445567899999999999986 3677766654 4564 58999999999954
No 451
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.69 E-value=0.026 Score=58.37 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
-.|+|||||.+|+-+|..++++|.+|.++++.+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4699999999999999999999999999998743
No 452
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.69 E-value=0.0022 Score=59.85 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
++|++|||+|.+|+..|..|+++|.+ |.|+||.+..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccC
Confidence 47999999999999999999999987 9999999764
No 453
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.68 E-value=0.03 Score=59.15 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
+..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56789999999999999999999999999999865
No 454
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.68 E-value=0.025 Score=58.95 Aligned_cols=98 Identities=27% Similarity=0.351 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCC---------------c---------------------------
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R--------------------------- 228 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------------~--------------------------- 228 (461)
-.|+|||+|..|+-+|..+++.|.+|+++++.+.... .
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4699999999999999999999999999887543210 0
Q ss_pred ---------------cc-----------------------------CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC
Q 012545 229 ---------------LF-----------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 264 (461)
Q Consensus 229 ---------------~~-----------------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g 264 (461)
.| ...+.+.+.+.+++.||+++.++.++++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 00 0123334455566778889889999998764456
Q ss_pred CEEEEEeC-------CC-cEEecCEEEEccCC
Q 012545 265 EVKEVKLK-------DG-RTLEADIVVVGVGG 288 (461)
Q Consensus 265 ~~~~v~~~-------~G-~~i~aD~vi~a~G~ 288 (461)
++.++... ++ ..+.++.||+|+|.
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 77776553 23 36899999999995
No 455
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0016 Score=67.56 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC--CC---c-EEecCEEEEccCCCCChhhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG---R-TLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~G---~-~i~aD~vi~a~G~~p~~~~~ 295 (461)
..+...++..++++.+++.++.+.. +.++...++.. ++ + ...++.||++.|...+..++
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 3444567777899999999999998 45555555553 33 1 25789999999987776665
No 456
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.018 Score=57.14 Aligned_cols=102 Identities=23% Similarity=0.306 Sum_probs=64.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC---CcEEEEccCCccCCc--------------------cc----CHHHHHH------
Q 012545 191 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPR--------------------LF----TADIAAF------ 237 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~~~--------------------~~----~~~~~~~------ 237 (461)
.+|+|||+|++|+.+|..|.+.- ..++++++.+.+..+ .+ +.+..++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 238888776553211 00 1122222
Q ss_pred ----------------------------HHHHHHhcC---cEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEcc
Q 012545 238 ----------------------------YEGYYANKG---IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 286 (461)
Q Consensus 238 ----------------------------~~~~l~~~G---V~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~ 286 (461)
+...+++.- +.++ .++.+++...+++....+...+|.+..||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 222222222 3333 34455555544566677888999999999999999
Q ss_pred CCCCChh
Q 012545 287 GGRPLIS 293 (461)
Q Consensus 287 G~~p~~~ 293 (461)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9766543
No 457
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.65 E-value=0.031 Score=59.25 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
.-.|+|||||.+|+-+|..|+.+|.+|.++++.+
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 3579999999999999999999999999999874
No 458
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.57 E-value=0.034 Score=58.83 Aligned_cols=97 Identities=13% Similarity=0.214 Sum_probs=67.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCccCCcc-----------c---------------------CH----
Q 012545 191 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-----------F---------------------TA---- 232 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~-----------~---------------------~~---- 232 (461)
-.|+|||+|..|+-+|..+++. |.+|.++++.+...... + ++
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 3699999999999999999998 99999998764210000 0 00
Q ss_pred -----------------------------------------HHHHHHHHHHHhcC-cEEEcCCcEEEEEecCCCCEEEEE
Q 012545 233 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVK 270 (461)
Q Consensus 233 -----------------------------------------~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~ 270 (461)
.+...+.+.+++.| |+++.++.+.++.. +++++.++.
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~ 170 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV 170 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence 11122334455555 99999999999875 356666653
Q ss_pred ---eCCCc--EEecCEEEEccCC
Q 012545 271 ---LKDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 271 ---~~~G~--~i~aD~vi~a~G~ 288 (461)
..+|+ .+.++.||+|+|-
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCc
Confidence 24554 6899999999994
No 459
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.50 E-value=0.04 Score=56.99 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 469999999999999999999999999999873
No 460
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.48 E-value=0.035 Score=58.98 Aligned_cols=101 Identities=25% Similarity=0.353 Sum_probs=69.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccCCccCCc----------------------------------ccC---
Q 012545 190 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR----------------------------------LFT--- 231 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~~----------------------------------~~~--- 231 (461)
.-.|+|||+|+.|+-+|..|+++ |.+|+++++.+..... .+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35799999999999999999995 9999999877432110 000
Q ss_pred -----------------------------HHHHHHHHHHHHhcC--cEEEcCCcEEEEEecCCC-CEEEEEeC------C
Q 012545 232 -----------------------------ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVKEVKLK------D 273 (461)
Q Consensus 232 -----------------------------~~~~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~g-~~~~v~~~------~ 273 (461)
..+.+.+.+.+++.| +++..++++++++.++++ ..+.+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 012334555566665 577889999999864322 22345553 3
Q ss_pred C--cEEecCEEEEccCCCC
Q 012545 274 G--RTLEADIVVVGVGGRP 290 (461)
Q Consensus 274 G--~~i~aD~vi~a~G~~p 290 (461)
| +++.||+||-|=|.+.
T Consensus 192 g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARS 210 (634)
T ss_pred CceEEEEeCEEEECCCCch
Confidence 5 5799999999988643
No 461
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.36 E-value=0.046 Score=58.12 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=37.5
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~ 288 (461)
+.+++.||+++.++.++++.. +++++.+|... +|+ .+.|+.||+|||-
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 345677899999999999886 35777777764 453 5899999999996
No 462
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.35 E-value=0.017 Score=58.86 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
|..+.++++|||+|..|+.+|..|++.|++ |+++|++.
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 434568999999999999999999999987 99999874
No 463
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.33 E-value=0.044 Score=56.44 Aligned_cols=56 Identities=29% Similarity=0.305 Sum_probs=40.1
Q ss_pred HHHHHHHHHh-cCcEEEcCCcEEEEEecCCCCEEEEEeCC-C--cEEecCEEEEccCCCCC
Q 012545 235 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGRPL 291 (461)
Q Consensus 235 ~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G--~~i~aD~vi~a~G~~p~ 291 (461)
.+.+.+.+++ .||+++.++.++++.. +++.+.++...+ + ..+.++.||+|+|....
T Consensus 131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 131 ITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 3445555565 6899999999999986 356666665543 3 36899999999996543
No 464
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.31 E-value=0.05 Score=57.06 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=38.2
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC---CCc--EEecCEEEEccCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 288 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~G~--~i~aD~vi~a~G~ 288 (461)
.+.+.+++.||+++.++.++++.. ++|++.++... +|+ .+.++.||+|||-
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 344445567899999999999887 46888887653 332 5789999999994
No 465
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.019 Score=58.59 Aligned_cols=82 Identities=24% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
..++++|+|+|.+|..+|..|.+.|.+|+++++... ..+ +...+.+.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 468999999999999999999999999999877431 222 2233456777887665433210
Q ss_pred EEeCCCcEEecCEEEEccCCCCChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~p~~~~~ 295 (461)
..-.+|.||.++|..|+.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012579999999998887755
No 466
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.28 E-value=0.0035 Score=65.34 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-c---EEecCEEEEccCCCCChhhh
Q 012545 236 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R---TLEADIVVVGVGGRPLISLF 295 (461)
Q Consensus 236 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~---~i~aD~vi~a~G~~p~~~~~ 295 (461)
.++...+++.|++++.++.|++|.. +++++.+|++.++ . .+.++.||+|.|.--...++
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 3444444567899999999999997 3667788877543 2 35899999999964444433
No 467
>PLN03000 amine oxidase
Probab=96.27 E-value=0.0054 Score=65.98 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=33.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..+|+|||||++|+.||..|.+.|++ |+|+|+.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~ri 219 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKRP 219 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCcC
Confidence 58999999999999999999999987 9999998763
No 468
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.24 E-value=0.056 Score=56.47 Aligned_cols=53 Identities=21% Similarity=0.388 Sum_probs=38.3
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
.+.+.+++.||++++++.++++..++++++.++.. .+|+ .+.|+.||+|||--
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 34445566789999999999987644444666653 4564 58899999999964
No 469
>PLN02785 Protein HOTHEAD
Probab=96.17 E-value=0.0058 Score=64.05 Aligned_cols=35 Identities=17% Similarity=0.542 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~ 42 (461)
..||+||||||.||+.+|.+|.+ +.+ |+|||+++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 36999999999999999999999 455 999999963
No 470
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.13 E-value=0.0096 Score=43.07 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEccCCccCC
Q 012545 195 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 227 (461)
Q Consensus 195 VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~ 227 (461)
|||+|.+|+-+|..|++.|.+|+++++.+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999987644
No 471
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=96.12 E-value=0.043 Score=43.84 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHHHHhcccCCCcccCCCCCCeEEEecC-CcceEEccCC
Q 012545 352 AVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDN 389 (461)
Q Consensus 352 aa~~i~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~g~~ 389 (461)
|++||.+.. .+|.++|+||+... ++.+..+|..
T Consensus 1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~ 34 (133)
T PF14721_consen 1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIV 34 (133)
T ss_dssp HHHHHTTT--------S-S--EEEEESSTTEEEEEEES-
T ss_pred CCccccCCC-----CcccccchhHhhcCCCcCeEEeeec
Confidence 567888764 78999999999984 7777777743
No 472
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.022 Score=56.04 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
.-.|+|||||-.|+|.|.+.++.|.+.+++..+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 347999999999999999999999998887654
No 473
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.09 E-value=0.025 Score=54.95 Aligned_cols=35 Identities=37% Similarity=0.540 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCc
Q 012545 190 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 224 (461)
Q Consensus 190 ~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 224 (461)
..+|+|+|||..|+-.|..|.+.|.+|.+++....
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 35799999999999999999999999999987644
No 474
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.04 E-value=0.092 Score=55.25 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=38.8
Q ss_pred HHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEE---eCCCc--EEecCEEEEccCCC
Q 012545 237 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 237 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~--~i~aD~vi~a~G~~ 289 (461)
.+.+.+++.||+++.++.++++.. +++++.++. ..+|+ .+.|+.||+|+|..
T Consensus 140 ~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 140 ELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 345556677899999999999876 366666654 24564 58999999999964
No 475
>PLN02976 amine oxidase
Probab=95.99 E-value=0.0088 Score=67.03 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
.+||+|||||++|+++|..|.+.|++ |+|+|+.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccCC
Confidence 58999999999999999999999986 9999998653
No 476
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.91 E-value=0.13 Score=54.29 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 222 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~ 222 (461)
-.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 46999999999999999999999999998875
No 477
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.83 E-value=0.13 Score=54.69 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 369999999999999999999999999987753
No 478
>PTZ00367 squalene epoxidase; Provisional
Probab=95.78 E-value=0.086 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999865
No 479
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.76 E-value=0.14 Score=53.92 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEEccCC
Q 012545 192 KAVVVGGGYIGLELSAALKINN---IDVSMVYPEP 223 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g---~~Vtli~~~~ 223 (461)
.|+|||+|..|+-+|..+++.| .+|+++++.+
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 5999999999999999999988 7999988653
No 480
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.72 E-value=0.039 Score=60.02 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEccCCc
Q 012545 192 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW 224 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~--g~~Vtli~~~~~ 224 (461)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998875
No 481
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.66 E-value=0.11 Score=51.07 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCcEEEEccCCccCCc-ccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCC-cEEecC
Q 012545 203 LELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEAD 280 (461)
Q Consensus 203 ~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G-~~i~aD 280 (461)
-++...+.+.|.... .++..++.|. .-..++.+.+.+.+++.||+++++++|++|.. ++ ..+.+.++ ..+.||
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a~ 131 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEAD 131 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEecC
Confidence 466778888887633 4556666663 24668889999999999999999999999932 32 45666543 469999
Q ss_pred EEEEccCCCC
Q 012545 281 IVVVGVGGRP 290 (461)
Q Consensus 281 ~vi~a~G~~p 290 (461)
.||+|+|-.+
T Consensus 132 ~vIlAtGG~s 141 (376)
T TIGR03862 132 AVVLALGGAS 141 (376)
T ss_pred EEEEcCCCcc
Confidence 9999999754
No 482
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.58 E-value=0.099 Score=54.61 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=34.5
Q ss_pred HHHHHh-cCcEEEcCCcEEEEEecC-CCCEEEEEe-CCCc--EEecCEEEEccCC
Q 012545 239 EGYYAN-KGIKIIKGTVAVGFTTNA-DGEVKEVKL-KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 239 ~~~l~~-~GV~v~~~~~v~~i~~~~-~g~~~~v~~-~~G~--~i~aD~vi~a~G~ 288 (461)
.+.+++ .||+++.++.++++..++ ++++.++.. .+|. .+.++.||+|||-
T Consensus 141 ~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 141 TEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 333433 378888888888887643 367777654 3454 3789999999996
No 483
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.56 E-value=0.24 Score=51.85 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 368999999999999999999999999988765
No 484
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=95.49 E-value=0.014 Score=54.93 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCC-CcEEEEeCCCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKP-GELAIISKEAVA 43 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~-~~V~vie~~~~~ 43 (461)
..||+|||||-.|.+.|..|.++-.+. .+|+|+|++...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 579999999999999999998762221 459999999653
No 485
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.41 E-value=0.0041 Score=54.49 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 012545 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (461)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~ 41 (461)
..||||+|+|.+||+||+.+.++. ++.+|++||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccC-CCceEEEEEeee
Confidence 359999999999999999999764 567799999874
No 486
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.39 E-value=0.13 Score=53.25 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=32.0
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEeCC--Cc--EEecCEEEEccCCCC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKLKD--GR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--G~--~i~aD~vi~a~G~~p 290 (461)
.||+++.++.++++.. +++++.++...+ |+ .+.++.||+|+|...
T Consensus 142 ~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 142 PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 4677777777777765 356666666543 33 688999999999644
No 487
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.34 E-value=0.093 Score=44.51 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeC
Q 012545 193 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 272 (461)
Q Consensus 193 v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~ 272 (461)
|+|+|+|.+|.-+|..|++.|.+|+++.|.+ ..+.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~--------------~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP--------------RLEAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH--------------HHHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc--------------cHHhhhheeEEEEecccceeccc-------ccccC
Confidence 6899999999999999999999999987632 12347788998876652111111 11222
Q ss_pred CC--cEEecCEEEEccCCCCChhhhh
Q 012545 273 DG--RTLEADIVVVGVGGRPLISLFK 296 (461)
Q Consensus 273 ~G--~~i~aD~vi~a~G~~p~~~~~~ 296 (461)
+. ..-++|.||+|+=.....+.++
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~ 85 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQ 85 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHH
Confidence 21 2346899999986655555443
No 488
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.31 E-value=0.23 Score=53.00 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHhcCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCC
Q 012545 240 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 288 (461)
Q Consensus 240 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~ 288 (461)
+.+++.||+++.++.++++.. +++++.++.. .+|+ .+.|+.||+|||-
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 445667899999999999986 4677766654 3564 4679999999993
No 489
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.26 E-value=0.044 Score=53.43 Aligned_cols=102 Identities=22% Similarity=0.360 Sum_probs=59.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccCCcc--CCccc------------------C-------------------
Q 012545 192 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC--MPRLF------------------T------------------- 231 (461)
Q Consensus 192 ~v~VvG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~--~~~~~------------------~------------------- 231 (461)
.++.||.|+.++-+|..|...+ .++.++++.+.+ -+.++ +
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998876 788888877642 11110 0
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCC--CEEEEEeC----CCcEEecCEEEEccCCCCChh
Q 012545 232 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EVKEVKLK----DGRTLEADIVVVGVGGRPLIS 293 (461)
Q Consensus 232 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g--~~~~v~~~----~G~~i~aD~vi~a~G~~p~~~ 293 (461)
.+..+++.-..++..-.+..+++|++|+...++ ....|.+. +++++.|+.||+++|..|..+
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 022233333333444448889999999874433 34567762 346899999999999888765
No 490
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.19 E-value=0.022 Score=58.50 Aligned_cols=38 Identities=16% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 43 (461)
..||.||||||.||...|..|.+. +..+|+|+|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn--~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSEN--PNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccC--CCceEEEEecCCCC
Confidence 469999999999999999999985 34569999999865
No 491
>PLN02815 L-aspartate oxidase
Probab=95.19 E-value=0.2 Score=52.74 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=27.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCC
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 223 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~ 223 (461)
-.|+|||+|..|+-+|..+++.| +|.++++.+
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~ 61 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDE 61 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence 46999999999999999999988 888887654
No 492
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.12 E-value=0.08 Score=51.41 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEEEEeCCCcEEecCEEEEccCCCC
Q 012545 231 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 290 (461)
Q Consensus 231 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~G~~i~aD~vi~a~G~~p 290 (461)
+..+...+.+.+++.|++++.+++|+++.. .++.+..|.+.+| ++.||.||+|+|...
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 677888888999999999999999999987 3555667787777 899999999999543
No 493
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.09 E-value=0.032 Score=55.41 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCcc
Q 012545 191 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 225 (461)
Q Consensus 191 ~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 225 (461)
++|+|||+|..|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976654
No 494
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.06 E-value=0.067 Score=48.07 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccCCccCCcccCHHHHHHHHHHHHhcCcEEEcCCcEEEEEecCCCCEEE
Q 012545 189 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 268 (461)
Q Consensus 189 ~~~~v~VvG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 268 (461)
.+++|+|||||.+|..-+..|.+.|.+|+++.+... ..+.+..++..++++...--.+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~-----------~~l~~l~~~~~i~~~~~~~~~~dl~-------- 68 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE-----------SELTLLAEQGGITWLARCFDADILE-------- 68 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC-----------HHHHHHHHcCCEEEEeCCCCHHHhC--------
Q ss_pred EEeCCCcEEecCEEEEccCCC-CChhhh
Q 012545 269 VKLKDGRTLEADIVVVGVGGR-PLISLF 295 (461)
Q Consensus 269 v~~~~G~~i~aD~vi~a~G~~-p~~~~~ 295 (461)
.+++||.|||-. .|..+.
T Consensus 69 ---------~~~lVi~at~d~~ln~~i~ 87 (205)
T TIGR01470 69 ---------GAFLVIAATDDEELNRRVA 87 (205)
T ss_pred ---------CcEEEEECCCCHHHHHHHH
No 495
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.04 E-value=0.039 Score=51.18 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc----CCCCCcEEEEeCCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEA 41 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~----g~~~~~V~vie~~~ 41 (461)
+.++++|||+|..|++.|..+.+. ..+.++|++++...
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 367999999999999999888874 44567899998775
No 496
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.01 E-value=0.045 Score=46.91 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=30.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCCCcEEEEeCC
Q 012545 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (461)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~L~~~g~~~~~V~vie~~ 40 (461)
+.++|+|||||..|..-+..|.+.|.+ |+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~---V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAF---VTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcCc
Confidence 468999999999999999999998876 9999755
No 497
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.00 E-value=0.039 Score=45.99 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccC
Q 012545 188 KKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPE 222 (461)
Q Consensus 188 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~-Vtli~~~ 222 (461)
..+++++|+|+|-.|-.++..|...|.+ |+++.|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3689999999999999999999999977 9998873
No 498
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.92 E-value=0.37 Score=50.74 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=32.7
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEE---eCCCc--EEecCEEEEccCCCC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRP 290 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~G~--~i~aD~vi~a~G~~p 290 (461)
.+|+++.++.++++.. +++++.++. +.+|+ .+.++.||+|+|...
T Consensus 147 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 147 PQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred CCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 3688888888888876 356666654 34663 688999999999533
No 499
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=94.91 E-value=0.4 Score=50.48 Aligned_cols=44 Identities=30% Similarity=0.375 Sum_probs=32.6
Q ss_pred cCcEEEcCCcEEEEEecCCCCEEEEEe---CCCc--EEecCEEEEccCCC
Q 012545 245 KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 289 (461)
Q Consensus 245 ~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~G~--~i~aD~vi~a~G~~ 289 (461)
.||+++.++.++++.. +++++.++.. .+|+ .+.++.||+|+|..
T Consensus 146 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred CCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 4688888888888876 3677766543 4663 68899999999953
No 500
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.83 E-value=0.24 Score=51.30 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHHHHHhc-CcEEEcCCcEEEEEecCCCCEEEEEeCC-Cc--EEecCEEEEccCCC
Q 012545 237 FYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEADIVVVGVGGR 289 (461)
Q Consensus 237 ~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~-G~--~i~aD~vi~a~G~~ 289 (461)
.+.+.+++. ||+++.++.++++.. +++++.++...+ +. .+.++.||+|+|--
T Consensus 141 ~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 141 ALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 334444443 788888888888765 356777766543 32 58999999999963
Done!